Citrus Sinensis ID: 039173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSErieaipdgntnatkanggwatsasnknikfdsdgnigddffqqseESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEeldrqvplideidTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Flexible Loop (DISEMBL)
mtvidilfrldDICKKYDKYDIEkqrdlnahgdDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKarlleevpklqklarkkvkglskeeqetrhdlvLGLSERIeaipdgntnatkanggwatsasnKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKvdkatsdlknnnvrLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Low Complexity Region (SEG)
MTVIDILFRLddickkydkydiekQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFDSDGNIGDDffqqseessqfrqeYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Disordered region (IsUnstruct)
**VIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALL**********************************************************************************************************************************I**GLDTLKNLALDMN**LDRQVPLIDEIDTKV********NNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQA***
Disordered Region (DISOPRED)
*TVIDILFRLDDICKKYDK******************RFYATVESEID***********************EVRRTKARLLEEV************************LVLGLS******************************************************************DVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Disordered Region (DISEMBL)
MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKL***************RHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Disordered Region (DISPRO)
*TVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPD*************************DGNIGDDFFQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQALKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q9SF29	266	Syntaxin-71 OS=Arabidopsi	yes	no	0.996	0.992	0.695	1e-105
Q94KK6	267	Syntaxin-72 OS=Arabidopsi	no	no	0.992	0.985	0.695	1e-103
Q94KK5	263	Syntaxin-73 OS=Arabidopsi	no	no	0.981	0.988	0.614	2e-82
Q94KK7	233	Syntaxin-52 OS=Arabidopsi	no	no	0.652	0.742	0.28	0.0003
Q9S7P9	300	SNAP25 homologous protein	no	no	0.283	0.25	0.373	0.0006

>sp|Q9SF29|SYP71_ARATH Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/266 (69%), Positives = 217/266 (81%), Gaps = 2/266 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           MTVIDIL R+D ICKKYDKYD++KQR+ N  GDDAFAR Y   E++I+ AL KAE  + E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRAAAVAM AE+RRTKARL EEVPKLQ+LA K+VKGL+ EE   R+DLVL L  RIEAI
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query: 121 PDGNTNATKANGGWATSA--SNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQ 178
           PDG     K+   W  S+  S  +IKFDSDG   DD+FQ+S ESSQFRQEYEMRK+KQ+Q
Sbjct: 121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180

Query: 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS 238
           GLD+ISEGLD LKN+A DMNEELDRQVPL+DEIDTKVD+ATSDLKN NVRLK+T+ ++RS
Sbjct: 181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRS 240

Query: 239 SRNFCIDIILLCVILGIASYLYQALK 264
           SRNFCIDI+LLC++LGIA+YLY  LK
Sbjct: 241 SRNFCIDIVLLCIVLGIAAYLYNVLK 266

Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK6|SYP72_ARATH Syntaxin-72 OS=Arabidopsis thaliana GN=SYP72 PE=2 SV=1

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/266 (69%), Positives = 226/266 (84%), Gaps = 3/266 (1%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M VIDI+FR+D+ICKKYDKYDI+K R++ A GDDAF+R + +++S+I+  L KAE AS E
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRAAAVAM AEVRRTKARL E+V KLQKLA KK+KGL++EE+E+R DLV+ L++R++AI
Sbjct: 61  KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120

Query: 121 PDGNTNATK-ANGGWA-TSASNKNIKFD-SDGNIGDDFFQQSEESSQFRQEYEMRKMKQD 177
           PDGN +  K AN  W   SA NKNIKFD S+ ++ D FFQQSEESSQFRQEYEMR+ KQD
Sbjct: 121 PDGNEHGAKQANSDWGGASAPNKNIKFDMSEEDMDDGFFQQSEESSQFRQEYEMRRKKQD 180

Query: 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237
           +GLD+ISEGLD LKNLA DMNEELD+QVPL++E++TKVD ATSDLKN NVRLK+ L+++R
Sbjct: 181 EGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQMR 240

Query: 238 SSRNFCIDIILLCVILGIASYLYQAL 263
           SSRNFCIDIILLCVILGI SY+Y AL
Sbjct: 241 SSRNFCIDIILLCVILGIVSYIYNAL 266

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK5|SYP73_ARATH Syntaxin-73 OS=Arabidopsis thaliana GN=SYP73 PE=2 SV=1

 Score =  305 bits (782), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/267 (61%), Positives = 210/267 (78%), Gaps = 7/267 (2%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M VID++ R+D ICKKY+KYDI +QRD N  GDDAF+R Y+ VE  ++  L K E  S E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
           TN+A AVAM AE+RRTKARLLE +PKLQ+L+ KKVKGLSKEE + R+DLVL L ++IEAI
Sbjct: 61  TNKAKAVAMNAEIRRTKARLLEGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFD---SDGNIGDDFFQQSEESSQFRQEYEMRKMKQD 177
           P+ +       GGW  S S  NI+FD   SD  IG ++FQ + ES QF+QEYEM+++KQ 
Sbjct: 121 PESSAPVV---GGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQFKQEYEMKRIKQA 177

Query: 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237
           + LD I+EGLDTLKN+A D+NEELDRQ PL+DEIDTK+DKA +DLK+ NVRLK+T+ K+R
Sbjct: 178 R-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAATDLKSTNVRLKDTVTKLR 236

Query: 238 SSRNFCIDIILLCVILGIASYLYQALK 264
           SSRNFCIDIILLC++LGIA+++Y ++K
Sbjct: 237 SSRNFCIDIILLCILLGIAAFIYNSVK 263

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK7|SYP52_ARATH Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 99/200 (49%), Gaps = 27/200 (13%)

Query: 63  RAAAVAMKAEVRRTK----ARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIE 118
           RA+A+  K  +  T+      LL +VP  Q ++ K        E   R D+V  L  +  
Sbjct: 42  RASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEK--------EMNRRKDMVGNLRSKT- 92

Query: 119 AIPDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMK-QD 177
                N  A+  N    ++ +N++  F +D    D   + S   +Q    ++ + M+ QD
Sbjct: 93  -----NQVASALN---MSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQD 144

Query: 178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL-LKV 236
           +GL+ + E + + K++AL +NEEL  Q  LID++D  VD   S L+    R++++L L  
Sbjct: 145 EGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLR----RVQKSLALMN 200

Query: 237 RSSRNFCIDIILLCVILGIA 256
           +S ++ C  + +L  +LGI 
Sbjct: 201 KSMKSGCSCMSMLLSVLGIV 220

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 43/75 (57%)

Query: 161 ESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATS 220
           ES+   Q  EM K KQD GL  +S+ L  LKN+A+DM  E+++Q   +D +   VD+   
Sbjct: 226 ESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNF 285

Query: 221 DLKNNNVRLKETLLK 235
            ++ +N R +  L K
Sbjct: 286 RVQQSNQRGRRLLGK 300

t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation. May function in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
359478331	262	PREDICTED: syntaxin-71-like [Vitis vinif	0.984	0.996	0.770	1e-112
255570847	262	Syntaxin-72, putative [Ricinus communis]	0.984	0.996	0.767	1e-112
297746235	264	unnamed protein product [Vitis vinifera]	0.992	0.996	0.758	1e-110
255557036	266	syntaxin, putative [Ricinus communis] gi	0.996	0.992	0.716	1e-107
449463641	261	PREDICTED: syntaxin-71-like [Cucumis sat	0.984	1.0	0.762	1e-107
297829508	266	hypothetical protein ARALYDRAFT_897138 [	0.996	0.992	0.699	1e-104
18398623	266	syntaxin-71 [Arabidopsis thaliana] gi|28	0.996	0.992	0.695	1e-104
356541896	291	PREDICTED: syntaxin-71-like [Glycine max	0.992	0.903	0.678	1e-102
356547190	262	PREDICTED: syntaxin-71-like [Glycine max	0.984	0.996	0.675	1e-102
225439930	265	PREDICTED: syntaxin-71 [Vitis vinifera]	0.996	0.996	0.753	1e-101

>gi|359478331|ref|XP_002282237.2| PREDICTED: syntaxin-71-like [Vitis vinifera]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/262 (77%), Positives = 228/262 (87%), Gaps = 1/262 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M+VIDI+FR+D ICKK+DKYD++KQRDLNA+GDDAFAR YA+VE+ I+ AL K+E + +E
Sbjct: 1   MSVIDIIFRVDQICKKFDKYDVDKQRDLNAYGDDAFARLYASVEANIESALHKSEISLIE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
           TNRAAAVA+ AE+RRTKARLLEEV KLQKL  KKVKGL+KEE   R+DLVL L ERI AI
Sbjct: 61  TNRAAAVALNAEIRRTKARLLEEVVKLQKLVLKKVKGLTKEELSIRNDLVLALPERIRAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFD-SDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQG 179
           PDG+    K    WA SAS+KNI FD SDGN   +FFQQSEESSQFRQEYEMR+MKQDQG
Sbjct: 121 PDGSMAGAKQTANWAASASHKNIMFDSSDGNFDSEFFQQSEESSQFRQEYEMRRMKQDQG 180

Query: 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239
           LDVISEGLDTLKNLA DMNEELDRQVPLIDEIDTKVDKATSD+KN NVRLKET+ K+RSS
Sbjct: 181 LDVISEGLDTLKNLANDMNEELDRQVPLIDEIDTKVDKATSDIKNTNVRLKETVTKMRSS 240

Query: 240 RNFCIDIILLCVILGIASYLYQ 261
           +NFCIDIILLCVILGIASYLY+
Sbjct: 241 QNFCIDIILLCVILGIASYLYK 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570847|ref|XP_002526376.1| Syntaxin-72, putative [Ricinus communis] gi|223534335|gb|EEF36047.1| Syntaxin-72, putative [Ricinus communis]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/262 (76%), Positives = 230/262 (87%), Gaps = 1/262 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M+VIDILFR+DDIC+KY+KYDI+KQRDLN +GDDAFAR YA++ES++D AL K+E A+ME
Sbjct: 1   MSVIDILFRVDDICRKYEKYDIDKQRDLNCYGDDAFARLYASIESDVDAALHKSEVAAME 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRA+AVA+ AEVRRTKARL EEV KL+KLA KKVKGLS EEQ  R DLVLGL ERI+AI
Sbjct: 61  NNRASAVAINAEVRRTKARLAEEVVKLKKLANKKVKGLSTEEQAIRPDLVLGLIERIQAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFD-SDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQG 179
           PDG     K  GG A S +N+ IKFD SD ++  DFFQQSEESSQFRQEYEMRK+KQDQG
Sbjct: 121 PDGTAGGAKQAGGRAGSLTNQTIKFDSSDEHLHGDFFQQSEESSQFRQEYEMRKLKQDQG 180

Query: 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239
           LD+ISEGLDTLKNLA DMNEELDRQVPLIDEIDTKVDKATSDLKN NVRLK+TL+++RSS
Sbjct: 181 LDIISEGLDTLKNLAQDMNEELDRQVPLIDEIDTKVDKATSDLKNTNVRLKQTLVQIRSS 240

Query: 240 RNFCIDIILLCVILGIASYLYQ 261
           RNFCIDIILLCVILG+ASY+Y+
Sbjct: 241 RNFCIDIILLCVILGVASYIYK 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746235|emb|CBI16291.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/265 (75%), Positives = 226/265 (85%), Gaps = 2/265 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M+VIDI+FR+D ICKK+DKYD++KQRDLNA+GDDAFAR YA+VE+ I+ AL K+E + +E
Sbjct: 1   MSVIDIIFRVDQICKKFDKYDVDKQRDLNAYGDDAFARLYASVEANIESALHKSEISLIE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
           TNRAAAVA+ AE+RRTKARLLEEV KLQKL  KKVKGL+KEE   R+DLVL L ERI AI
Sbjct: 61  TNRAAAVALNAEIRRTKARLLEEVVKLQKLVLKKVKGLTKEELSIRNDLVLALPERIRAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFDS-DGNIGDDFFQQSEESSQFRQEYEMRKMKQDQG 179
           PDG+    K    WA SAS+KNI FDS DGN   +FFQQSEESSQFRQEYEMR+MKQ   
Sbjct: 121 PDGSMAGAKQTANWAASASHKNIMFDSSDGNFDSEFFQQSEESSQFRQEYEMRRMKQ-AS 179

Query: 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239
           LDVISEGLDTLKNLA DMNEELDRQVPLIDEIDTKVDKATSD+KN NVRLKET+ K+RSS
Sbjct: 180 LDVISEGLDTLKNLANDMNEELDRQVPLIDEIDTKVDKATSDIKNTNVRLKETVTKMRSS 239

Query: 240 RNFCIDIILLCVILGIASYLYQALK 264
           +NFCIDIILLCVILGIASYLY  LK
Sbjct: 240 QNFCIDIILLCVILGIASYLYNVLK 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557036|ref|XP_002519551.1| syntaxin, putative [Ricinus communis] gi|223541414|gb|EEF42965.1| syntaxin, putative [Ricinus communis]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/265 (71%), Positives = 227/265 (85%), Gaps = 1/265 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M+VIDIL R+D IC+KYD+YD+EKQ+DLN  GDDAFAR YA VE++I+ AL KAE AS E
Sbjct: 1   MSVIDILTRVDAICQKYDRYDVEKQKDLNVSGDDAFARLYAVVEADIESALQKAEVASKE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            N+A+AVA+ AE+RRTKA+LLEEVPKLQ+LA KKVKGLS EE   R+DLVL L +RI+AI
Sbjct: 61  KNKASAVALNAEIRRTKAKLLEEVPKLQRLAVKKVKGLSTEELTARNDLVLALPDRIQAI 120

Query: 121 PDGNTNATKANGGW-ATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQG 179
           PDGN  A K  GGW A SAS   IKFDSDG   +++FQ++E SSQFRQEYEMR+MKQDQG
Sbjct: 121 PDGNAAAPKQTGGWGAPSASRTEIKFDSDGRFDNEYFQENETSSQFRQEYEMRRMKQDQG 180

Query: 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239
           LD+IS+GLDTLK++A DMNEELDRQVPL+DEIDTKVDKAT+DLKN NVRLK+T+ ++RSS
Sbjct: 181 LDMISKGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKATADLKNTNVRLKDTVNQLRSS 240

Query: 240 RNFCIDIILLCVILGIASYLYQALK 264
           RNFCIDI+LLC+ILGIA+YLY  LK
Sbjct: 241 RNFCIDIVLLCIILGIAAYLYNVLK 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463641|ref|XP_004149540.1| PREDICTED: syntaxin-71-like [Cucumis sativus] gi|449526057|ref|XP_004170031.1| PREDICTED: syntaxin-71-like [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/261 (76%), Positives = 225/261 (86%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           MTVIDI+FR+D ICKKYDKYD+EKQR+LNA+GDDAFAR +A VE EI  AL K+E AS E
Sbjct: 1   MTVIDIIFRVDSICKKYDKYDVEKQRELNAYGDDAFARLFAAVELEIHAALQKSEVASTE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
           TNRAAAVAM AEVRR KARL++EVPKL+KLA KKVKG+ KEE E R DLVL L E+I+AI
Sbjct: 61  TNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELEVRDDLVLALEEKIKAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQGL 180
           PDGNT+  K +GGW +S+S+ NIKFDS      ++FQQSEESSQFR EYEMRKMKQDQGL
Sbjct: 121 PDGNTSGAKHSGGWGSSSSSNNIKFDSSSGFHSEYFQQSEESSQFRNEYEMRKMKQDQGL 180

Query: 181 DVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSR 240
           DVISEGLD LKNLA DMNEELDRQVPLIDEID+KVDK T ++KN NVRLKETL +VRSS+
Sbjct: 181 DVISEGLDMLKNLAHDMNEELDRQVPLIDEIDSKVDKVTDEIKNTNVRLKETLYEVRSSQ 240

Query: 241 NFCIDIILLCVILGIASYLYQ 261
           NFCIDIILLCVILGIASYLY+
Sbjct: 241 NFCIDIILLCVILGIASYLYK 261

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829508|ref|XP_002882636.1| hypothetical protein ARALYDRAFT_897138 [Arabidopsis lyrata subsp. lyrata] gi|297328476|gb|EFH58895.1| hypothetical protein ARALYDRAFT_897138 [Arabidopsis lyrata subsp. lyrata]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/266 (69%), Positives = 217/266 (81%), Gaps = 2/266 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           MTVIDIL R+D ICKKYDKYD++KQR+ N  GDDAFAR Y   E++I+ AL KAE  + E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRAAAVAM AE+RRTKARL EEVPKLQ+LA K+VKGL+ EE   R+DLVL L  RIEAI
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query: 121 PDGNTNATKANGGWATSA--SNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQ 178
           PDG     K   GW  S+  S  +IKFDSDG   DD+FQ+S ESSQFRQEYEMRK+KQ+Q
Sbjct: 121 PDGTAGGPKNTSGWTPSSTTSRPDIKFDSDGRFDDDYFQESHESSQFRQEYEMRKIKQEQ 180

Query: 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS 238
           GLD+ISEGLD LKN+A DMNEELDRQVPL+DEIDTKVD+ATSDLKN NVRLK+T+ ++RS
Sbjct: 181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRS 240

Query: 239 SRNFCIDIILLCVILGIASYLYQALK 264
           SRNFCIDI+LLC++LGIA+YLY  LK
Sbjct: 241 SRNFCIDIVLLCIVLGIAAYLYNVLK 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398623|ref|NP_566354.1| syntaxin-71 [Arabidopsis thaliana] gi|28380165|sp|Q9SF29.1|SYP71_ARATH RecName: Full=Syntaxin-71; Short=AtSYP71 gi|6682251|gb|AAF23303.1|AC016661_28 unknown protein [Arabidopsis thaliana] gi|13811648|gb|AAK40225.1|AF355757_1 syntaxin of plants 71 [Arabidopsis thaliana] gi|19699303|gb|AAL91262.1| AT3g09740/F11F8_33 [Arabidopsis thaliana] gi|87116600|gb|ABD19664.1| At3g09740 [Arabidopsis thaliana] gi|332641286|gb|AEE74807.1| syntaxin-71 [Arabidopsis thaliana]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/266 (69%), Positives = 217/266 (81%), Gaps = 2/266 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           MTVIDIL R+D ICKKYDKYD++KQR+ N  GDDAFAR Y   E++I+ AL KAE  + E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRAAAVAM AE+RRTKARL EEVPKLQ+LA K+VKGL+ EE   R+DLVL L  RIEAI
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query: 121 PDGNTNATKANGGWATSA--SNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQ 178
           PDG     K+   W  S+  S  +IKFDSDG   DD+FQ+S ESSQFRQEYEMRK+KQ+Q
Sbjct: 121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180

Query: 179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS 238
           GLD+ISEGLD LKN+A DMNEELDRQVPL+DEIDTKVD+ATSDLKN NVRLK+T+ ++RS
Sbjct: 181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRS 240

Query: 239 SRNFCIDIILLCVILGIASYLYQALK 264
           SRNFCIDI+LLC++LGIA+YLY  LK
Sbjct: 241 SRNFCIDIVLLCIVLGIAAYLYNVLK 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541896|ref|XP_003539408.1| PREDICTED: syntaxin-71-like [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/264 (67%), Positives = 219/264 (82%), Gaps = 1/264 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M+VIDILFR+DDIC+KYDKYDI+KQR+LNA+GDD FAR YA VES I  AL K+E AS E
Sbjct: 1   MSVIDILFRVDDICQKYDKYDIDKQRELNAYGDDLFARLYAAVESSIQSALNKSEVASTE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRA+A A+ AEVRRTK RL++E+PKL+KL  KKVKGL+KE+   R DLVL L ERI+AI
Sbjct: 61  KNRASAAALNAEVRRTKGRLMDELPKLRKLVHKKVKGLTKEDMAIRQDLVLALPERIQAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFD-SDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQG 179
           PDG + A     GW  ++S  +IKFD S+G++  D+FQQSEESSQFRQEYEMR+ KQD+G
Sbjct: 121 PDGISGAAVQTAGWTATSSQPHIKFDSSEGHLDSDYFQQSEESSQFRQEYEMRRTKQDEG 180

Query: 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239
           LD+ISEGL+TLK+LA DMNEE+DRQVPL+DEID KVD+A +D++N NVRLK+TL ++RSS
Sbjct: 181 LDIISEGLETLKDLAQDMNEEIDRQVPLMDEIDRKVDRAAADVRNTNVRLKKTLTEIRSS 240

Query: 240 RNFCIDIILLCVILGIASYLYQAL 263
           RNFCIDI+LLCV+LGI  YLY  L
Sbjct: 241 RNFCIDIVLLCVLLGIVLYLYNCL 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547190|ref|XP_003541999.1| PREDICTED: syntaxin-71-like [Glycine max]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/262 (67%), Positives = 219/262 (83%), Gaps = 1/262 (0%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           M+VIDILFR+DDIC KY+KYDI+KQR+LNA+GDD FAR YA V+S I  AL K+E AS E
Sbjct: 1   MSVIDILFRVDDICHKYEKYDIDKQRELNAYGDDLFARLYAAVDSSIQSALNKSEVASTE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRA+A A+ AEVRRTK RL++E+PKL+KL  KKVKGL+KE+   R DLVL L ERI+AI
Sbjct: 61  KNRASAAALNAEVRRTKGRLMDELPKLRKLMHKKVKGLTKEDMAVRQDLVLALPERIQAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFD-SDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQG 179
           PDG + A     GW  ++S  +IKFD S+G++  D+FQQSEESSQFRQEYEMR+ KQD+G
Sbjct: 121 PDGISGAAVQTAGWTATSSQPHIKFDSSEGHLSSDYFQQSEESSQFRQEYEMRRTKQDEG 180

Query: 180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS 239
           LD+ISEGLDTLK+LA +MNEE+DRQVPL+DEIDTKVD+A +D++N NVRLK+TL ++RSS
Sbjct: 181 LDIISEGLDTLKDLAHEMNEEIDRQVPLMDEIDTKVDRAAADVRNTNVRLKKTLTEIRSS 240

Query: 240 RNFCIDIILLCVILGIASYLYQ 261
           RNFCIDI+LLCV+LGI  YLY+
Sbjct: 241 RNFCIDIVLLCVLLGIFLYLYK 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439930|ref|XP_002280272.1| PREDICTED: syntaxin-71 [Vitis vinifera] gi|297741579|emb|CBI32711.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/264 (75%), Positives = 226/264 (85%)

Query: 1   MTVIDILFRLDDICKKYDKYDIEKQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
           MTVIDIL R+D ICKKYDKYDI+KQ+DLN  GDDAFAR YA VE++I+ AL KA+TAS E
Sbjct: 1   MTVIDILTRVDAICKKYDKYDIDKQKDLNVSGDDAFARLYAVVEADIEAALQKADTASNE 60

Query: 61  TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
            NRA+AVA+ AE+RRTKARLLEEVPKLQ+LA KKVKGLS EE   R+DLVL L +RI+AI
Sbjct: 61  KNRASAVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELAARNDLVLALPDRIQAI 120

Query: 121 PDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQGL 180
           PDG   A K  GGWA SAS   IKFDSDG    ++FQQ+EESSQFRQEYEMRKM QDQGL
Sbjct: 121 PDGAATAPKQTGGWAASASRTEIKFDSDGRFDSEYFQQTEESSQFRQEYEMRKMNQDQGL 180

Query: 181 DVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSR 240
           DVI+EGLDTLKN+A DMNEELDRQVPL+DEIDTKVDKAT+DLKN NVRLK+T+ ++RSSR
Sbjct: 181 DVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKATADLKNTNVRLKDTVNQLRSSR 240

Query: 241 NFCIDIILLCVILGIASYLYQALK 264
           NFCIDIILLC+ILGIA+YLY  LK
Sbjct: 241 NFCIDIILLCIILGIAAYLYNVLK 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2075054	266	SYP71 "syntaxin of plants 71"	0.996	0.992	0.612	8.7e-79
TAIR|locus:2078282	267	SYP72 "syntaxin of plants 72"	0.992	0.985	0.597	1.5e-76
DICTYBASE|DDB_G0289063	271	DDB_G0289063 [Dictyostelium di	0.852	0.833	0.279	7.1e-10
TAIR|locus:2032835	232	SYP51 "syntaxin of plants 51"	0.845	0.965	0.258	3.8e-07
TAIR|locus:2019858	233	SYP52 "syntaxin of plants 52"	0.664	0.755	0.266	5.2e-07
TAIR|locus:2079449	306	SYP131 "syntaxin of plants 131	0.294	0.254	0.3	1.3e-05
ASPGD|ASPL0000095103	923	AN12172 [Emericella nidulans (	0.532	0.152	0.300	1.7e-05
POMBASE|SPBC36B7.07	225	tlg1 "SNARE Tgl1 (predicted)"	0.788	0.928	0.221	3.5e-05
DICTYBASE|DDB_G0275429	152	syn8A "t-SNARE family protein"	0.350	0.611	0.273	3.6e-05
UNIPROTKB|O95721	258	SNAP29 "Synaptosomal-associate	0.215	0.220	0.368	4.8e-05

TAIR|locus:2075054 SYP71 "syntaxin of plants 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 163/266 (61%), Positives = 191/266 (71%)

Query:     1 MTVIDILFRLXXXXXXXXXXXXXXQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
             MTVIDIL R+              QR+ N  GDDAFAR Y   E++I+ AL KAE  + E
Sbjct:     1 MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query:    61 TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
              NRAAAVAM AE+RRTKARL EEVPKLQ+LA K+VKGL+ EE   R+DLVL L  RIEAI
Sbjct:    61 KNRAAAVAMNAEIRRTKARLSEEVPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEAI 120

Query:   121 PDGNTNATKANGGWATSA--SNKNIKFDSDGNIGDDXXXXXXXXXXXXXXYEMRKMKQDQ 178
             PDG     K+   W  S+  S  +IKFDSDG   DD              YEMRK+KQ+Q
Sbjct:   121 PDGTAGGPKSTSAWTPSSTTSRPDIKFDSDGRFDDDYFQESNESSQFRQEYEMRKIKQEQ 180

Query:   179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS 238
             GLD+ISEGLD LKN+A DMNEELDRQVPL+DEIDTKVD+ATSDLKN NVRLK+T+ ++RS
Sbjct:   181 GLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVNQLRS 240

Query:   239 SRNFCIDIILLCVILGIASYLYQALK 264
             SRNFCIDI+LLC++LGIA+YLY  LK
Sbjct:   241 SRNFCIDIVLLCIVLGIAAYLYNVLK 266

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0008565 "protein transporter activity" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006605 "protein targeting" evidence=RCA

TAIR|locus:2078282 SYP72 "syntaxin of plants 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 159/266 (59%), Positives = 198/266 (74%)

Query:     1 MTVIDILFRLXXXXXXXXXXXXXXQRDLNAHGDDAFARFYATVESEIDKALLKAETASME 60
             M VIDI+FR+               R++ A GDDAF+R + +++S+I+  L KAE AS E
Sbjct:     1 MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query:    61 TNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAI 120
              NRAAAVAM AEVRRTKARL E+V KLQKLA KK+KGL++EE+E+R DLV+ L++R++AI
Sbjct:    61 KNRAAAVAMNAEVRRTKARLAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQAI 120

Query:   121 PDGNTNATK-ANGGWA-TSASNKNIKFD-SDGNIGDDXXXXXXXXXXXXXXYEMRKMKQD 177
             PDGN +  K AN  W   SA NKNIKFD S+ ++ D               YEMR+ KQD
Sbjct:   121 PDGNEHGAKQANSDWGGASAPNKNIKFDMSEEDMDDGFFQQSEESSQFRQEYEMRRKKQD 180

Query:   178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR 237
             +GLD+ISEGLD LKNLA DMNEELD+QVPL++E++TKVD ATSDLKN NVRLK+ L+++R
Sbjct:   181 EGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRLKKQLVQMR 240

Query:   238 SSRNFCIDIILLCVILGIASYLYQAL 263
             SSRNFCIDIILLCVILGI SY+Y AL
Sbjct:   241 SSRNFCIDIILLCVILGIVSYIYNAL 266

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0289063 DDB_G0289063 [Dictyostelium discoideum (taxid:44689)]

 Score = 157 (60.3 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 68/243 (27%), Positives = 107/243 (44%)

Query:    26 RDLNAHGD-DAFARFYATVESEID--KALLKAET---ASMETNRAAAVAMKAEVRRTKAR 79
             + LNA G  DAF      +  +I   + L+K      AS+       V +  +VR     
Sbjct:    23 KQLNADGTTDAFTLLRRKIGLDIKGIRELIKERDEAEASLGPGTVRTVQLSHQVRTAIID 82

Query:    80 LLEEVPKLQKL---ARKKVKGLSKE--EQETRHDLVLGLSERIEAIPDGNTNATKANGGW 134
             +  E  KLQ++   + ++ K  +KE  E++ + DL     E   A         K  GG 
Sbjct:    83 VKGECNKLQRMHDKSEERYKRKNKENPEKQKKLDLTRETCELAWAHVKELELQNKQRGG- 141

Query:   135 ATSASNKNIKFDSDGNIGDDXXXXXXXXXXXXXXYEM-RKMKQDQG-LDVISEGLDTLKN 192
                  +K I  D + +  +                E+ R  KQ  G LD ISE L   +N
Sbjct:   142 ---DGSKFIPRDHNQSSSNASGTKQLPDLDNDDFKELLRNDKQIDGVLDQISEQLKITEN 198

Query:   193 LALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVI 252
             +A +M +   RQ  L+D ++ K D     L+N N+RL + +  +R +  F ID+IL+ V+
Sbjct:   199 IANEMGKAATRQGVLLDTLNDKADVLDEKLENINIRLGKMIKDIRKADRFIIDVILIVVL 258

Query:   253 LGI 255
             LGI
Sbjct:   259 LGI 261

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2032835 SYP51 "syntaxin of plants 51" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 62/240 (25%), Positives = 106/240 (44%)

Query:    30 AHGDDAFARFY--ATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKL 87
             A   D++ R Y  A   SE    ++   ++S  T   A     A +RR       ++  L
Sbjct:     2 ASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASA-IRRKITIFGNKLDSL 60

Query:    88 QKL-ARKKVKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFD 146
             Q L A    K +S++E   R D+V  L  +   + +    +  AN     S    +IK D
Sbjct:    61 QSLLAEIHGKPISEKEMNRRKDMVGNLRSKANQMANALNMSNFAN---RDSLLGPDIKPD 117

Query:   147 SDGNIGDDXXXXXXXXXXXXXXYEMRKMK-QDQGLDVISEGLDTLKNLALDMNEELDRQV 205
                   D               Y+ + M+ QD+GL+ +   + + K++AL ++EELD Q 
Sbjct:   118 ------DSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQT 171

Query:   206 PLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCV-ILGIASYLYQALK 264
              LID++D  VD   S L+     L      +RS  + C+ ++L  + I+G+A  ++  +K
Sbjct:   172 RLIDDLDYHVDVTDSRLRRVQKSLAVMNKNMRSGCS-CMSMLLSVLGIVGLAVVIWMLVK 230

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA;TAS

GO:0010008 "endosome membrane" evidence=NAS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2019858 SYP52 "syntaxin of plants 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 52/195 (26%), Positives = 98/195 (50%)

Query:    63 RAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPD 122
             RA+A+  K  +  T+   L+ +  L K+  K+   +S++E   R D+V  L  +   +  
Sbjct:    42 RASAIRRKITILGTRLDSLQSL--LVKVPGKQ--HVSEKEMNRRKDMVGNLRSKTNQV-- 95

Query:   123 GNTNATKANGGWATSASNKNIKFDSDGNIGDDXXXXXXXXXXXXXXYEMRKMK-QDQGLD 181
                 A+  N    ++ +N++  F +D    D               ++ + M+ QD+GL+
Sbjct:    96 ----ASALN---MSNFANRDSLFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLE 148

Query:   182 VISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL-LKVRSSR 240
              + E + + K++AL +NEEL  Q  LID++D  VD   S L+    R++++L L  +S +
Sbjct:   149 KLEETVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLR----RVQKSLALMNKSMK 204

Query:   241 NFCIDIILLCVILGI 255
             + C  + +L  +LGI
Sbjct:   205 SGCSCMSMLLSVLGI 219

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0010008 "endosome membrane" evidence=NAS;TAS

GO:0016192 "vesicle-mediated transport" evidence=RCA;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 24/80 (30%), Positives = 45/80 (56%)

Query:   175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234
             + D   D+  + LD L+ + LDM   +D Q  ++D I+  V  A   +++ N +L + + 
Sbjct:   211 RHDAVRDLEKKLLD-LQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKAVK 269

Query:   235 KVRSSRNF-CIDIILLCVIL 253
               +SSR + CI I++L +I+
Sbjct:   270 SQKSSRKWMCIAILILLIII 289

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

ASPGD|ASPL0000095103 AN12172 [Emericella nidulans (taxid:162425)]

 Score = 130 (50.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 46/153 (30%), Positives = 68/153 (44%)

Query:    83 EVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKN 142
             E+ ++Q+  RK V  + KE +E R +L+       + I D +    KA    +T   N  
Sbjct:   779 EIEEVQR-RRKLVDDVGKEIEEMRGELM-------KVITDSDHAEAKATR--STGLPNP- 827

Query:   143 IKFDSDGNIGDDXXXXXXXXXXXXXXYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELD 202
               FD  G  GDD               E+   +QD+ LD +   +  L+  A DM  EL+
Sbjct:   828 ADFDDHGLDGDDQGEDYYAAMEQQRQMELMH-EQDEQLDGVFRTVGNLRQQADDMGRELE 886

Query:   203 RQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK 235
              Q  +I EIDT  D+    L+N   RLK  + K
Sbjct:   887 EQAIMIGEIDTLADRVGGKLQNGMSRLKHIIRK 919

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPBC36B7.07 tlg1 "SNARE Tgl1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 118 (46.6 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 50/226 (22%), Positives = 94/226 (41%)

Query:    33 DDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQ---K 89
             +D F    A   +++++ + K   + M    +  ++   E+      L E +  L+   +
Sbjct:     2 EDPFYEVKADASNQMEQ-VRKLYNSFMAARNSGVLSPNTELTYAIDELSETLKDLKAAVE 60

Query:    90 LARKKVK--GLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFDS 147
             +A K  +  GL +EE ++R   V  L   IE     N    K     +T  S +    D+
Sbjct:    61 IAMKNSEHFGLDEEELKSRRRFVSELD--IEL----NNIQLKMGAAPSTPVSTEPYTVDN 114

Query:   148 DGNIGDDXXXXXXXXXXXXXXYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPL 207
               + G                Y+    +QD  LD + + +  ++  A  M EEL +Q  L
Sbjct:   115 GASAGLSEEDHAVNRQYQEQLYQ----QQDVMLDGVYDTIGNIRGQAALMGEELGQQADL 170

Query:   208 IDEIDTKVDKATSDLKNNNVRLKE-TLLKVRSSRNFCIDIILLCVI 252
             +D +D  ++   S L+    RLK+ T+    S    CI ++++ +I
Sbjct:   171 LDTLDNSIETTNSKLRRGMKRLKDFTIASADSKSGCCITVLIIILI 216

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0010008 "endosome membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0048193 "Golgi vesicle transport" evidence=IEA

DICTYBASE|DDB_G0275429 syn8A "t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 108 (43.1 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 26/95 (27%), Positives = 49/95 (51%)

Query:   170 EMRKMK-QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVR 228
             + R M+ QD+ LD +S  +  +K+ A+ +N+    Q  ++DE+D  VD  ++ ++N    
Sbjct:    59 QKRDMEEQDKMLDALSGSISRVKDTAITINKTAQEQTDMLDELDVHVDSTSARMRNTTKN 118

Query:   229 LKETLLKVRSSRNFCIDIILLCVILGIASYLYQAL 263
             L  TL +   +  +C  I  L ++L +   L   L
Sbjct:   119 LI-TLTQQSKTTGYCSAICFLLLVLLVIIILASVL 152

GO:0031201 "SNARE complex" evidence=IDA

GO:0010008 "endosome membrane" evidence=IEA;IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0006810 "transport" evidence=IEA;ISS

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|O95721 SNAP29 "Synaptosomal-associated protein 29" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query:   175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231
             K D  LD +S GL  LK++AL M  E++ Q  ++D + TKVDK   ++K+   ++++
Sbjct:   201 KIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKVRQ 257

GO:0015031 "protein transport" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006887 "exocytosis" evidence=TAS

GO:0006903 "vesicle targeting" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SF29	SYP71_ARATH	No assigned EC number	0.6954	0.9962	0.9924	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam05739	62	pfam05739, SNARE, SNARE domain	2e-10
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	4e-06
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	2e-05

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLK 230
           +D+ L+ +   +  LK L LDM EE++ Q  L+D ID  VD   S ++  N RLK
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLK 55

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 176 QDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231
           +D+ L+ +   +  LK + LD+  E++ Q  L+D I+  VD A  ++K  N RLK+
Sbjct: 4   RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59

Length = 60

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 23/65 (35%), Positives = 38/65 (58%)

Query: 167 QEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNN 226
           Q+   R+ ++D+ L+ + + +  LK + LDM  EL+ Q   +D I+  VD A  +LK  N
Sbjct: 1   QQALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60

Query: 227 VRLKE 231
            RLK+
Sbjct: 61  KRLKK 65

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.97
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	99.48
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.36
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.02
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	98.97
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	98.92
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	98.87
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	98.86
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	98.84
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.84
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	98.83
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	98.79
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	98.57
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	98.48
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	98.26
KOG2678	244	consensus Predicted membrane protein [Function unk	97.54
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	97.35
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.06
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	96.96
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.71
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	96.65
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	96.4
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	96.09
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	95.4
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	94.81
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	94.29
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	92.9
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	92.21
PF11166	98	DUF2951: Protein of unknown function (DUF2951); In	90.39
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	89.5
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	88.74
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	88.63
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	86.94
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	86.04
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	85.03
PRK00846	77	hypothetical protein; Provisional	83.13
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	81.78
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	81.47
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	80.35

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-28  Score=212.85  Aligned_cols=219  Identities=21%  Similarity=0.278  Sum_probs=151.5

Q ss_pred             cCCCCChHHHHHHHHH---HHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHH--hcCCCCHHHH
Q 039173           29 NAHGDDAFARFYATVE---SEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARK--KVKGLSKEEQ  103 (265)
Q Consensus        29 ~~~~~Dpw~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~k--k~~~lt~~El  103 (265)
                      |.+..|||+.++.++.   +.++..++++++..+. ....+...+..+|..+....++|+.+...+.+  ..+++++.|+
T Consensus         1 ~~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~-~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El   79 (235)
T KOG3202|consen    1 MLSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKD-TGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFEL   79 (235)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHH
Confidence            4567899999999987   5566777777765443 12234455667774454444444444444222  3468999999


Q ss_pred             HHHHHHHHHHHHHHHhcccccccc---Cc--CCCCCCCCCCCCCcccCCCCCCCCccccCchhHHHHHHHHHHHHhhhhh
Q 039173          104 ETRHDLVLGLSERIEAIPDGNTNA---TK--ANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRKMKQDQ  178 (265)
Q Consensus       104 ~~R~~~v~~l~~~~~~l~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~te~t~~~qQq~~~~~~eqD~  178 (265)
                      .+|+.++.+++.++.+++..+...   +.  +..+.++...+.  ..+...+..+..  ......++||+ .+  ++||+
T Consensus        80 ~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~--~~~~~~~~~~~D--~v~~~~~~qqq-m~--~eQDe  152 (235)
T KOG3202|consen   80 SRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPN--LDEAMSRASGLD--NVQEIVQLQQQ-ML--QEQDE  152 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCc--hhhhHHHhhccC--cHHHHHHHHHH-HH--HHHHH
Confidence            999999999999999999887652   11  222222111110  001100111110  01333344444 44  89999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Q 039173          179 GLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGI  255 (265)
Q Consensus       179 ~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l  255 (265)
                      +||.|+++|+++|++|..||+|+++|+.|||+++..||.|..+|.++++++.++.+...+|++||++++++++++++
T Consensus       153 ~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lv  229 (235)
T KOG3202|consen  153 GLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLV  229 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999877889899555444444433

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.1e-13  Score=106.03  Aligned_cols=83  Identities=22%  Similarity=0.320  Sum_probs=72.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL  253 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil  253 (265)
                      .|.|+.++.|.+-|..||.++.+||.|++.||++||.+++++|+|...|..++.|++.+.+. +..+.||+.+++++|.+
T Consensus        32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-sg~~l~~~m~~f~lV~~  110 (118)
T KOG3385|consen   32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-SGISLLCWMAVFSLVAF  110 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999998 44677886555555444


Q ss_pred             HHHH
Q 039173          254 GIAS  257 (265)
Q Consensus       254 ~l~~  257 (265)
                      +|+.
T Consensus       111 fi~~  114 (118)
T KOG3385|consen  111 FILW  114 (118)
T ss_pred             HHhh
Confidence            4443

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.36  E-value=5.9e-12  Score=88.01  Aligned_cols=62  Identities=32%  Similarity=0.566  Sum_probs=59.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173          175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV  236 (265)
Q Consensus       175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~  236 (265)
                      ++|+.|+.|+..|.+|++++.+|+.||++|+++||.|+.+|+.|..+|..++++|+++.++.
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999999999999998864

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.02  E-value=1.7e-09  Score=74.22  Aligned_cols=58  Identities=33%  Similarity=0.566  Sum_probs=56.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE  231 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~  231 (265)
                      +++|+.|+.|+..|..+++++.+|+.||..|+++||.++..++.+...++.+++++.+
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999999876

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.4e-07  Score=84.03  Aligned_cols=91  Identities=14%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC--CchHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS--RNFCIDIILLCV  251 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~--~~~ci~i~lliv  251 (265)
                      ++..+++.+|...|..+.+|..+++.-|.+|++++|.|+..|+++...+..++..|.+..+..++.  ..||+.++++++
T Consensus       176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~v  255 (269)
T KOG0811|consen  176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGPV  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999887654  233344466666


Q ss_pred             HHHHHHHHHHHhc
Q 039173          252 ILGIASYLYQALK  264 (265)
Q Consensus       252 il~l~~~~~~~~k  264 (265)
                      +|++++++|..++
T Consensus       256 ~lii~l~i~~~~~  268 (269)
T KOG0811|consen  256 GLIIGLIIAGIAA  268 (269)
T ss_pred             HHHHHHHHHHhhc
Confidence            6666667776554

>smart00397 t_SNARE Helical region found in SNAREs

Probab=98.92  E-value=9.2e-09  Score=71.74  Aligned_cols=58  Identities=36%  Similarity=0.570  Sum_probs=56.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE  231 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~  231 (265)
                      +++|+.|+.|+..+..+++++..|+.+|..|+++||.++..++.+...+..+++++++
T Consensus         8 ~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        8 EERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            7999999999999999999999999999999999999999999999999999999875

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.87  E-value=3.1e-08  Score=87.06  Aligned_cols=69  Identities=22%  Similarity=0.414  Sum_probs=64.9

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCch
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNF  242 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~  242 (265)
                      .+-|+++..|+.+|..+.++..++|.=|.+|++++|.||..++.|...++.|++.|.+.....+..++|
T Consensus       191 ~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~  259 (283)
T COG5325         191 TERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC  259 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc
Confidence            678999999999999999999999999999999999999999999999999999999999988765554

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=4.2e-07  Score=80.63  Aligned_cols=152  Identities=13%  Similarity=0.207  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcccccccc--------CcCCC-C--CCCCCCCCCcccCCCCCCCCccccCchhHHHH
Q 039173           97 GLSKEEQETRHDLVLGLSERIEAIPDGNTNA--------TKANG-G--WATSASNKNIKFDSDGNIGDDFFQQSEESSQF  165 (265)
Q Consensus        97 ~lt~~El~~R~~~v~~l~~~~~~l~~~~~~~--------~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~te~t~~~  165 (265)
                      ..++.|.--|.++...+-.++..+...|...        ..+.. .  +. ....+...    .+...++...     .+
T Consensus       129 ~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e-~~~~~~~~----~~dd~d~~~~-----~~  198 (305)
T KOG0809|consen  129 QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYE-DSLDNTVD----LPDDEDFSDR-----TF  198 (305)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchh-hhcccccc----Ccchhhhhhh-----hH
Confidence            5789999999999988888888876665421        00100 0  00 00001100    0101112111     12


Q ss_pred             HHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Q 039173          166 RQEYEMRK-------MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS  238 (265)
Q Consensus       166 qQq~~~~~-------~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~  238 (265)
                      ++++.|..       .+-++++-+|..+|..|.++..+++.-|-+|+-++|.||-.++.|..+++.|.+.+.+.-...+.
T Consensus       199 qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~  278 (305)
T KOG0809|consen  199 QEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKR  278 (305)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhc
Confidence            11111111       45678899999999999999999999999999999999999999999999999999999888887


Q ss_pred             CCchHHHHHHHHHHHHHHHH
Q 039173          239 SRNFCIDIILLCVILGIASY  258 (265)
Q Consensus       239 ~~~~ci~i~llivil~l~~~  258 (265)
                      .+++|++.+|++++++++++
T Consensus       279 ~~k~~~i~~L~l~ii~llvl  298 (305)
T KOG0809|consen  279 NKKMKVILMLTLLIIALLVL  298 (305)
T ss_pred             CCceEehHHHHHHHHHHHHH
Confidence            77776555555554444443

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=7.6e-09  Score=92.12  Aligned_cols=60  Identities=38%  Similarity=0.510  Sum_probs=58.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL  233 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~  233 (265)
                      .++|..|++|+.++++||.||.+||.||+.||+.||.|++++|+.+.++..+|+|+++++
T Consensus       214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            589999999999999999999999999999999999999999999999999999999874

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=1.1e-05  Score=71.47  Aligned_cols=84  Identities=17%  Similarity=0.284  Sum_probs=72.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH
Q 039173          177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIA  256 (265)
Q Consensus       177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~  256 (265)
                      -..+..|+.+|..|..+...+..-|.+|.|++..||+.||.+.-.+..+...|-+.....++.+|.++-|+.++++|+|+
T Consensus       226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflv  305 (311)
T KOG0812|consen  226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLV  305 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999887766666666666666665


Q ss_pred             HHHH
Q 039173          257 SYLY  260 (265)
Q Consensus       257 ~~~~  260 (265)
                      +|+|
T Consensus       306 fvlf  309 (311)
T KOG0812|consen  306 FVLF  309 (311)
T ss_pred             HHHh
Confidence            5554

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=2.4e-08  Score=90.21  Aligned_cols=68  Identities=18%  Similarity=0.305  Sum_probs=62.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Q 039173          172 RKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS  239 (265)
Q Consensus       172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~  239 (265)
                      ..++-...+-.|..++..|+++..+|...|+.|++|+|.|+.+|.++...+..++..+++.....+..
T Consensus       200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka  267 (297)
T KOG0810|consen  200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA  267 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44667788999999999999999999999999999999999999999999999999999888776654

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=98.79  E-value=4.6e-08  Score=74.39  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhh---hhh-hhHHhhhhhHHHHHHHHHHHhhHHHHHHHHH--H---hcCCCCHHHHH
Q 039173           34 DAFARFYATVESEIDKALLKAETAS---MET-NRAAAVAMKAEVRRTKARLLEEVPKLQKLAR--K---KVKGLSKEEQE  104 (265)
Q Consensus        34 Dpw~~~~~~~~~~l~~~l~~~~~~~---~~~-~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~--k---k~~~lt~~El~  104 (265)
                      |||+.+.+++...|..+-.......   ... +......+..+++..|..++++|.+|++++.  .   .+|+|++.|+.
T Consensus         1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~   80 (97)
T PF09177_consen    1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS   80 (97)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence            8999999998877776533322111   111 1122345668999999999999999999972  1   34699999999


Q ss_pred             HHHHHHHHHHHHHHhcc
Q 039173          105 TRHDLVLGLSERIEAIP  121 (265)
Q Consensus       105 ~R~~~v~~l~~~~~~l~  121 (265)
                      +|+.+|..++.++..|+
T Consensus        81 ~Rr~fv~~~~~~i~~~k   97 (97)
T PF09177_consen   81 RRRQFVSAIRNQIKQMK   97 (97)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999998764

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=98.57  E-value=2e-06  Score=76.37  Aligned_cols=80  Identities=23%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL  253 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil  253 (265)
                      ..|++-.++|..-...||+.+..+++-|..-+..|+.....+|+....|+.+..|++...++.  ++||.|.++++++++
T Consensus       163 ~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~--~~~~~~~~i~~v~~~  240 (251)
T PF09753_consen  163 NLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS--WGCWTWLMIFVVIIV  240 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999987764  333433333333333


Q ss_pred             HH
Q 039173          254 GI  255 (265)
Q Consensus       254 ~l  255 (265)
                      ||
T Consensus       241 Fi  242 (251)
T PF09753_consen  241 FI  242 (251)
T ss_pred             HH
Confidence            33

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.48  E-value=7.9e-07  Score=76.44  Aligned_cols=85  Identities=21%  Similarity=0.334  Sum_probs=68.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc---CCCchHHHHHHHHH
Q 039173          175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR---SSRNFCIDIILLCV  251 (265)
Q Consensus       175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~---~~~~~ci~i~lliv  251 (265)
                      .-.+.|-.|..++..|-++..+|.++|.+|.++.|.++.++..+...+..++..+.+.++..|   ...++|++|+++ +
T Consensus       182 ~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~i-i  260 (280)
T COG5074         182 ARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFI-I  260 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHH-H
Confidence            445778999999999999999999999999999999999999999999999988888877654   346667555444 4


Q ss_pred             HHHHHHHHH
Q 039173          252 ILGIASYLY  260 (265)
Q Consensus       252 il~l~~~~~  260 (265)
                      |.||++|+|
T Consensus       261 i~viv~vv~  269 (280)
T COG5074         261 IIVIVVVVF  269 (280)
T ss_pred             HHHHHHHHh
Confidence            444444443

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.00029  Score=60.17  Aligned_cols=211  Identities=12%  Similarity=0.149  Sum_probs=115.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 039173           34 DAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGL  113 (265)
Q Consensus        34 Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l  113 (265)
                      ..|..-|..+..+|.+-+...-+...+ .+   ...=.+|...+..+.+.|..++--+    ..+++..-.--...+.++
T Consensus         6 e~yEqqy~~l~a~it~k~~~~~~~~~~-ek---k~~l~~i~~~leEa~ell~qMdlEv----r~lp~~~Rs~~~~KlR~y   77 (220)
T KOG1666|consen    6 EGYEQQYRELSAEITKKIGRALSLPGS-EK---KQLLSEIDSKLEEANELLDQMDLEV----RELPPNFRSSYLSKLREY   77 (220)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhcCCch-HH---HHHHHHHHHhHHHHHHHHHHHHHHH----HhCCchhhhHHHHHHHHH
Confidence            346667777777777666544322111 11   1122356666666666665554432    245555433344455566


Q ss_pred             HHHHHhccccccccCcCCCCCCCCCCCCCcccCCCCCCCCccccCchhHHHHHHHHHHHH---hhhhhhHHHHHHHHHHH
Q 039173          114 SERIEAIPDGNTNATKANGGWATSASNKNIKFDSDGNIGDDFFQQSEESSQFRQEYEMRK---MKQDQGLDVISEGLDTL  190 (265)
Q Consensus       114 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~te~t~~~qQq~~~~~---~eqD~~Ld~l~~~v~~l  190 (265)
                      ++.+++++..+...+.++...|...     ....... .++. ..+.   ..+++..+.-   ..=-+.|..=+.++...
T Consensus        78 ksdl~~l~~e~k~~~~~~~~~~~rd-----e~~~~~~-add~-~~~~---dQR~rLl~nTerLeRst~rl~ds~Ria~ET  147 (220)
T KOG1666|consen   78 KSDLKKLKRELKRTTSRNLNAGDRD-----ELLEALE-ADDQ-NISA---DQRARLLQNTERLERSTDRLKDSQRIALET  147 (220)
T ss_pred             HHHHHHHHHHHHHhhccccccchHH-----HHHhhhh-cccc-ccch---hHHHHHHhhhHHHHHhHHHHHHHHHHHHHH
Confidence            6666666655543332221111100     0000000 0000 0000   1111222111   11224455556777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHHh
Q 039173          191 KNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIASYLYQAL  263 (265)
Q Consensus       191 k~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~~~~~  263 (265)
                      -++|..|-++|..|.+-|..--+-.-.|++.|.++.+-++.+..+.- .++|.+.+++++.++++++++|+-+
T Consensus       148 EqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~-~nk~~~~aii~~l~~~il~ilY~kf  219 (220)
T KOG1666|consen  148 EQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI-RNKFTLTAIIALLVLAILLILYSKF  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999888888887653 3556556666666666666666644

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=97.54  E-value=0.0019  Score=55.48  Aligned_cols=89  Identities=15%  Similarity=0.174  Sum_probs=68.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH-HHH-HHHHHH
Q 039173          175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC-IDI-ILLCVI  252 (265)
Q Consensus       175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c-i~i-~llivi  252 (265)
                      -|.+-.+.+..-++.+|..+.+.++-+.+-|+-+......+|.....|..++.++.+--++.+  .+|. |.+ +++|+.
T Consensus       152 lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~--s~wf~~~miI~v~~s  229 (244)
T KOG2678|consen  152 LQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL--SYWFYITMIIFVILS  229 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh--hHHHHHHHHHHHHHH
Confidence            456777889999999999999999999999999999999999999999999999999877733  3332 322 333333


Q ss_pred             HHHHHHHHHHhcC
Q 039173          253 LGIASYLYQALKN  265 (265)
Q Consensus       253 l~l~~~~~~~~k~  265 (265)
                      ||..+++..++|+
T Consensus       230 FVsMiliiqifkk  242 (244)
T KOG2678|consen  230 FVSMILIIQIFKK  242 (244)
T ss_pred             HHHHHHHHHHhhc
Confidence            3444455566664

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=97.35  E-value=0.0064  Score=45.57  Aligned_cols=82  Identities=15%  Similarity=0.123  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Q 039173          178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIAS  257 (265)
Q Consensus       178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~  257 (265)
                      +.|......+..--+.+..--++|++|+.-|..+++..+...+.|..+.+-++.+.+... ..+|.++..++++++++++
T Consensus         8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~-~D~~li~~~~~~f~~~v~y   86 (92)
T PF03908_consen    8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDK-TDRILIFFAFLFFLLVVLY   86 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence            445555555555556666777889999999999999999999999999999999988753 4555555555555555555


Q ss_pred             HHH
Q 039173          258 YLY  260 (265)
Q Consensus       258 ~~~  260 (265)
                      |+|
T Consensus        87 I~~   89 (92)
T PF03908_consen   87 ILW   89 (92)
T ss_pred             Hhh
Confidence            554

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.06  E-value=0.016  Score=43.02  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=33.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173          177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK  235 (265)
Q Consensus       177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~  235 (265)
                      ++.+..+...|...+.+-..=-+.+-+-++-|+.|++..+.-...=..=.+..+++-++
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~   60 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK   60 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34555666666666655444445566666777777776665554444444444444444

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.035  Score=50.50  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=58.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL  253 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil  253 (265)
                      ++....|.+|++.-..+..+...=|+-|+.=..-...-.+.|+.+.+.++.|..    .-++++.+.++||+++++++++
T Consensus       209 k~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~----~qkkaRK~k~i~ii~~iii~~v  284 (297)
T KOG0810|consen  209 KKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK----YQKKARKWKIIIIIILIIIIVV  284 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhceeeeehHHHHHHHH
Confidence            567888999999988888888888888888888888888889999999888844    4455566766664444443333


Q ss_pred             HHHH
Q 039173          254 GIAS  257 (265)
Q Consensus       254 ~l~~  257 (265)
                      ++++
T Consensus       285 ~v~~  288 (297)
T KOG0810|consen  285 LVVV  288 (297)
T ss_pred             Hhhh
Confidence            3333

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.035  Score=43.23  Aligned_cols=35  Identities=14%  Similarity=0.122  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173          202 DRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV  236 (265)
Q Consensus       202 ~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~  236 (265)
                      =+=.+-|++|++..|..+..=..=.+...++-+++
T Consensus        53 lER~ekL~~L~drad~L~~~as~F~~~A~klkrk~   87 (116)
T KOG0860|consen   53 LERGEKLDELDDRADQLQAGASQFEKTAVKLKRKM   87 (116)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455677888777776665555555555555553

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.086  Score=45.35  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=89.6

Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhccccccccCcCCCCCCCCCCCCCcccCCCC
Q 039173           70 KAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSASNKNIKFDSDG  149 (265)
Q Consensus        70 ~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (265)
                      -.++...+.++.+.+..|+..+ .+ ...+...-.+++  +.+++.++..++..+.....++.-..-........++..-
T Consensus        35 ~~~i~~sI~~~~s~~~rl~~~~-~~-epp~~rq~~rlr--~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~  110 (213)
T KOG3251|consen   35 ENSIQRSIDQYASRCQRLDVLV-SK-EPPKSRQAARLR--VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDRRF  110 (213)
T ss_pred             HHHHHHhHHHHHHHHHHHHhHh-hc-CCCCcHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC
Confidence            3467777778887777777763 22 234455555555  7788888777766554321111000000000000000000


Q ss_pred             CCCCccccCchhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 039173          150 NIGDDFFQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL  229 (265)
Q Consensus       150 ~~~~~~~~~te~t~~~qQq~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l  229 (265)
                      +.+ +    +.-+.++  +-.   ..-+..|..=+..+..+=..|.+|=+-+.+|+.-|......|-.....|.-.+.-|
T Consensus       111 ~~~-~----~~~~~~~--D~e---l~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti  180 (213)
T KOG3251|consen  111 TNG-A----TGTSIPF--DEE---LQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTI  180 (213)
T ss_pred             CCC-C----ccCCCcc--hHH---HHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            000 0    0000000  001   12234566667777777888999999999999999999999999999999888888


Q ss_pred             HHHHHHccC
Q 039173          230 KETLLKVRS  238 (265)
Q Consensus       230 ~~~~~~~~~  238 (265)
                      .-|-+..+.
T Consensus       181 ~lIeRR~~~  189 (213)
T KOG3251|consen  181 RLIERRVRE  189 (213)
T ss_pred             HHHHHHHHh
Confidence            888777764

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.21  Score=43.14  Aligned_cols=59  Identities=20%  Similarity=0.226  Sum_probs=52.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173          178 QGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV  236 (265)
Q Consensus       178 ~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~  236 (265)
                      ..|+.=...|..+=.+|.+-.+-+..|+.+|..+..+|-.+..++=..|.=+.++..+-
T Consensus       149 ~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kk  207 (231)
T KOG3208|consen  149 DHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKK  207 (231)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            45667777788888899999999999999999999999999999999999999987773

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.1  Score=47.36  Aligned_cols=71  Identities=20%  Similarity=0.138  Sum_probs=64.1

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173          173 KMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC  243 (265)
Q Consensus       173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c  243 (265)
                      ..+|+++...|...|-.+-.+=..|.+-|-.|.+-+|-|-+.+..++..++.+|..+.++...++..+.|.
T Consensus       227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~  297 (316)
T KOG3894|consen  227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFL  297 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHH
Confidence            36778888899999999999999999999999999999999999999999999999999999877656555

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=95.40  E-value=0.3  Score=33.88  Aligned_cols=59  Identities=20%  Similarity=0.238  Sum_probs=54.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173          177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK  235 (265)
Q Consensus       177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~  235 (265)
                      ...|+.-...+...-++|.++-.+|..|++.|..+..+++.+...|..+++-++.+-++
T Consensus         7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            45788888899999999999999999999999999999999999999999999888654

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=94.81  E-value=0.54  Score=33.42  Aligned_cols=51  Identities=20%  Similarity=0.272  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHH
Q 039173          195 LDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILL  249 (265)
Q Consensus       195 ~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~ll  249 (265)
                      ..+...++.+.+-++.++..-+.....+...+.+++++-..    .+|.+.+++=
T Consensus         9 ~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n----~kW~~r~iiG   59 (71)
T PF10779_consen    9 NRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN----TKWIWRTIIG   59 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            34556666677788888888888888888999999988765    4565554333

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=94.29  E-value=0.98  Score=40.40  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=65.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVIL  253 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil  253 (265)
                      ...-+++-+|..+-..|+.+...=|.-|+.=..=|+.+.+.+..|+..|.+|+..=++.    +.|+.+|+++++++.++
T Consensus       198 ~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt----~k~~~~~Llil~vv~lf  273 (283)
T COG5325         198 KNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRT----KKCRFYLLLILLVVLLF  273 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhh----ccchhhHHHHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999998877654    45889996555444444


Q ss_pred             HHHH
Q 039173          254 GIAS  257 (265)
Q Consensus       254 ~l~~  257 (265)
                      ++++
T Consensus       274 v~l~  277 (283)
T COG5325         274 VSLI  277 (283)
T ss_pred             HHHH
Confidence            4433

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=92.90  E-value=1.8  Score=37.94  Aligned_cols=77  Identities=12%  Similarity=0.118  Sum_probs=45.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Q 039173          175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILG  254 (265)
Q Consensus       175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~  254 (265)
                      +.-+-+..+++-|..+.++       |+.=+.-+.+...+|....+.+.++-+-....-++-=-|-..|++|+++|+.++
T Consensus       196 el~qLfndm~~~V~eq~e~-------Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~vv  268 (280)
T COG5074         196 ELTQLFNDMEELVIEQQEN-------VDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVVVV  268 (280)
T ss_pred             HHHHHHHHHHHHHHhhcch-------HHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHHHH
Confidence            3333444444444444444       444445566677788888888888877765555544447667866666666555


Q ss_pred             HHHH
Q 039173          255 IASY  258 (265)
Q Consensus       255 l~~~  258 (265)
                      +-++
T Consensus       269 ~~v~  272 (280)
T COG5074         269 FKVV  272 (280)
T ss_pred             hccc
Confidence            4333

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.21  E-value=4  Score=36.66  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=65.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHH-HHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDI-ILLCVI  252 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i-~llivi  252 (265)
                      .+...++-++.+....|..|...=|+-|+.=..=++.....|..++..|.+|.+-=++..++.  |-..|+.+ ++|+++
T Consensus       183 ~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~--~~ll~v~~~v~lii~  260 (269)
T KOG0811|consen  183 EQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK--CILLLVGGPVGLIIG  260 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hhhhHHHHHHHHHHH
Confidence            677888889999999999999999999999999999999999999999999987766666664  76677655 444444


Q ss_pred             HHHH
Q 039173          253 LGIA  256 (265)
Q Consensus       253 l~l~  256 (265)
                      ++++
T Consensus       261 l~i~  264 (269)
T KOG0811|consen  261 LIIA  264 (269)
T ss_pred             HHHH
Confidence            4443

>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function

Probab=90.39  E-value=6.1  Score=29.64  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=37.2

Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc-cCCCchHHHH
Q 039173          168 EYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV-RSSRNFCIDI  246 (265)
Q Consensus       168 q~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~-~~~~~~ci~i  246 (265)
                      .+..+++.....|++|..++..+..+              .+.++-.+|.-... +..+++.++-..|+ +....|.+.+
T Consensus        15 rLEendk~i~~~L~~Ik~gq~~qe~v--------------~~kld~tlD~i~re-Re~dee~k~~n~Knir~~KmwilGl   79 (98)
T PF11166_consen   15 RLEENDKTIFNKLDEIKDGQHDQELV--------------NQKLDRTLDEINRE-REEDEENKKKNDKNIRDIKMWILGL   79 (98)
T ss_pred             HHHHhhHHHHHHHHHHHHhHhhHHHH--------------HHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44444555666666666665554444              44444444442221 33445555555552 2245566555


Q ss_pred             HHHHHHHHHHHHH
Q 039173          247 ILLCVILGIASYL  259 (265)
Q Consensus       247 ~llivil~l~~~~  259 (265)
                      +--++-.+|++++
T Consensus        80 vgTi~gsliia~l   92 (98)
T PF11166_consen   80 VGTIFGSLIIALL   92 (98)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

It has a highly conserved sequence.

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=89.50  E-value=4.4  Score=28.65  Aligned_cols=20  Identities=10%  Similarity=0.038  Sum_probs=10.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHH
Q 039173          215 VDKATSDLKNNNVRLKETLL  234 (265)
Q Consensus       215 vd~~~~~l~~~~~~l~~~~~  234 (265)
                      .......|..-....+++..
T Consensus        36 i~~~~~~l~~I~~n~kW~~r   55 (71)
T PF10779_consen   36 IKNLNKQLEKIKSNTKWIWR   55 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555544

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=88.74  E-value=3.7  Score=31.32  Aligned_cols=50  Identities=14%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 039173          175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKN  224 (265)
Q Consensus       175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~  224 (265)
                      .|-++++.|.+.|..+.+.-.....|++.|++.|+-|...+..-+.+|..
T Consensus        50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~   99 (102)
T PF01519_consen   50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK   99 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667777777777777777777777777777777777777666666654

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.63  E-value=10  Score=34.20  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=51.7

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHccCCCchHHHHHHH
Q 039173          173 KMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL---KETLLKVRSSRNFCIDIILL  249 (265)
Q Consensus       173 ~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l---~~~~~~~~~~~~~ci~i~ll  249 (265)
                      ++...-.+-+|+++...|.++...=++-+..=....|+.+-.++.+.+.|-+--.++   .+++-+     -|.++|++|
T Consensus       229 ~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvk-----iF~i~ivFf  303 (311)
T KOG0812|consen  229 MQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVK-----IFGILIVFF  303 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHH-----HHHHHHHHH
Confidence            356677777777777777777777777777777777888888888888777665555   334433     355455555


Q ss_pred             HHHHHH
Q 039173          250 CVILGI  255 (265)
Q Consensus       250 ivil~l  255 (265)
                      +|++++
T Consensus       304 lvfvlf  309 (311)
T KOG0812|consen  304 LVFVLF  309 (311)
T ss_pred             HHHHHh
Confidence            444443

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=86.94  E-value=8.9  Score=33.88  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC--CCchHHHHHHHHHH
Q 039173          187 LDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS--SRNFCIDIILLCVI  252 (265)
Q Consensus       187 v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~--~~~~ci~i~llivi  252 (265)
                      ...+-.+|..+-+-...=+..|.+=..-++++...+......++....+-+.  ...|+|+.++++++
T Consensus       169 ~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~  236 (251)
T PF09753_consen  169 TEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFV  236 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            3445566666666666667777777777888888888888777777666543  34455444444433

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=86.04  E-value=12  Score=27.74  Aligned_cols=79  Identities=11%  Similarity=0.193  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHH---HHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHH
Q 039173          186 GLDTLKNLALDMNEELDRQVPLIDEIDT---KVDKATSDLKNN---NVRLKETLLKVRSSRNFCIDIILLCVILGIASYL  259 (265)
Q Consensus       186 ~v~~lk~~a~~i~~El~~Q~~lLd~l~~---~vd~~~~~l~~~---~~~l~~~~~~~~~~~~~ci~i~llivil~l~~~~  259 (265)
                      .-..|...-..|.+|++.=..-++.|++   .+..+++.+...   ..+-++++++.....+.==+++.+.+++++++++
T Consensus         6 vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~   85 (92)
T PF03908_consen    6 VTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL   85 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3455666666777777766665555554   334444444433   3333445555432322223445555566666666


Q ss_pred             HHHhc
Q 039173          260 YQALK  264 (265)
Q Consensus       260 ~~~~k  264 (265)
                      |-+.|
T Consensus        86 yI~~r   90 (92)
T PF03908_consen   86 YILWR   90 (92)
T ss_pred             HHhhh
Confidence            66544

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=85.03  E-value=9.6  Score=30.30  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=52.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL  234 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~  234 (265)
                      ++.-+.|+.+...+..+.++...|.+|+.+=.+=++.+..+++.++..+...-.++..+-.
T Consensus        64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5666888999999999999999999999999999999999999999998888888876643

The region featured in this family is approximately 100 amino acids long.

>PRK00846 hypothetical protein; Provisional

Probab=83.13  E-value=15  Score=26.59  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=44.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 039173          172 RKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNN  226 (265)
Q Consensus       172 ~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~  226 (265)
                      ++...++.|+.|...+.-+-..-...++.|-.|...++.+...+.....+|+.+.
T Consensus         7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~   61 (77)
T PRK00846          7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   61 (77)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4456668888888888888888888888888999999888888888777776653

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=81.78  E-value=18  Score=26.42  Aligned_cols=42  Identities=17%  Similarity=0.327  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 039173          180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDL  222 (265)
Q Consensus       180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l  222 (265)
                      -+.+.+.+..+-+-+..+.+ ++.+.+-|.+-...+.+...+|
T Consensus        16 ~~im~~Ni~~ll~Rge~L~~-L~~kt~~L~~~a~~F~k~a~~l   57 (89)
T PF00957_consen   16 KNIMRENIDKLLERGEKLEE-LEDKTEELSDNAKQFKKNAKKL   57 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhHHHHHHHHHH
Confidence            33344444444444444433 4444444444444444443333

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=81.47  E-value=36  Score=29.76  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHHHHccCC-CchHHHH
Q 039173          200 ELDRQVPLIDEIDTKVDKA----------------TSDLKNNNVRLKETLLKVRSS-RNFCIDI  246 (265)
Q Consensus       200 El~~Q~~lLd~l~~~vd~~----------------~~~l~~~~~~l~~~~~~~~~~-~~~ci~i  246 (265)
                      ....|+..++-|.+..+.+                .+.+...-+.++...+++.+. ..+|-.+
T Consensus        91 ~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi  154 (230)
T PF03904_consen   91 TEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGI  154 (230)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4556666666555554443                223333344455555555544 4455444

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=80.35  E-value=33  Score=28.60  Aligned_cols=56  Identities=27%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Q 039173          196 DMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGIAS  257 (265)
Q Consensus       196 ~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~llivil~l~~  257 (265)
                      .+.+|...++.-+.+++.+++.--+.|+.....+|+=+      -+|++++++-++.+++++
T Consensus       117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~------lr~~~g~i~~~~a~~la~  172 (177)
T PF07798_consen  117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT------LRWLVGVIFGCVALVLAI  172 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            44455555555566666665555555554444444322      347765555444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	2e-17
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	8e-16
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	6e-12
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	9e-10
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	1e-08
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	7e-07
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 74.1 bits (182), Expect = 2e-17
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 157 QQSEESSQFRQEY--EMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTK 214
           +Q   S  F +    + R+ + D+ L+ +S  +  L+++ALDM  E+D Q   ID I  K
Sbjct: 6   EQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEK 65

Query: 215 VDKATSDLKNNNVRLKETL 233
            D   + +   N R  + L
Sbjct: 66  ADSNKTRIDEANQRATKML 84

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 69.4 bits (170), Expect = 8e-16
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 170 EMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL 229
             R+ + D+ L+ +S  +  L+++ALDM  E+D Q   ID I  K D   + +   N R 
Sbjct: 2   SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61

Query: 230 KETL 233
            + L
Sbjct: 62  TKML 65

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 15/66 (22%), Positives = 33/66 (50%)

Query: 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL 234
            QD+ L+++S  +  LKN++  +  EL+ Q  ++++   +++   S L N   +L +   
Sbjct: 16  MQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75

Query: 235 KVRSSR 240
                R
Sbjct: 76  MTSDRR 81

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87

 Score = 53.5 bits (128), Expect = 9e-10
 Identities = 15/64 (23%), Positives = 30/64 (46%)

Query: 170 EMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRL 229
           + R+   +  +  +S  +  L+N+A+DM  E+  Q   +D I  K +   S +   N + 
Sbjct: 22  DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81

Query: 230 KETL 233
            + L
Sbjct: 82  TKLL 85

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLK 230
           +QD GLD +S  +   K +  ++  ELD Q  +ID++   V+     L+    R+ 
Sbjct: 6   EQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Length = 64

 Score = 44.8 bits (106), Expect = 7e-07
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLK 230
           D+ LD I +  + LK +AL   +ELD Q   ++ I+   D    +L  N  RL 
Sbjct: 9   DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 156 FQQSEESSQFRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKV 215
              S  S Q   E E R       +  +   +  L ++ +DM   ++ Q  +ID I+  V
Sbjct: 3   HMDSSISKQALSEIETR----HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV 58

Query: 216 DKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCVILGI 255
           + A   ++      K+ +     +R   I II+ CVILGI
Sbjct: 59  EHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGI 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 59/213 (27%)

Query: 82  EEVPK-LQKLARKK-VKGLSKEEQETRHDLVLGLSERIEAIPDGNTNATKANGGWATSAS 139
            +V   + KL +   V+   KE   +   + L L  ++E                   A 
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY----------------AL 445

Query: 140 NKNI--------KFDSDG---NIGDDFF-----------QQSEESSQFRQEY-EMRKMKQ 176
           +++I         FDSD       D +F           +  E  + FR  + + R ++Q
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 177 -----DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE 231
                    +     L+TL        ++L    P I + D K ++  + + +   +++E
Sbjct: 506 KIRHDSTAWNASGSILNTL--------QQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 232 TLLKVRSSRNFCIDIILLCVILGIASYLYQALK 264
            L+  +       D++ + ++    +   +A K
Sbjct: 558 NLICSK-----YTDLLRIALMAEDEAIFEEAHK 585

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.69
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.61
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.57
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.55
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.52
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.47
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	99.29
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	98.9
2c5k_T	95	Syntaxin TLG1, T-snare affecting A late golgi comp	98.71
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	98.52
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	98.45
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	98.07
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	98.01
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	97.97
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	97.95
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	97.91
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	97.15
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	96.54
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.08
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	95.15
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	94.43
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	94.15
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	92.52
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	92.26
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	91.44
2nps_C	81	Vesicle transport through interaction with T- snar	91.25
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	89.64
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	88.98
2d9d_A	89	BAG family molecular chaperone regulator 5; triple	82.87

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.69  E-value=8.3e-17  Score=117.82  Aligned_cols=66  Identities=21%  Similarity=0.370  Sum_probs=61.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSS  239 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~  239 (265)
                      ++||+.||.|+.+|++||++|.+||+||+.||+|||+|+++||++..+|..+++|+++++++++++
T Consensus        15 ~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~   80 (82)
T 2nps_D           15 RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR   80 (82)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            899999999999999999999999999999999999999999999999999999999999997644

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.61  E-value=1.2e-15  Score=106.68  Aligned_cols=61  Identities=26%  Similarity=0.419  Sum_probs=53.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLL  234 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~  234 (265)
                      ++||+.||.|+.+|++||++|.+||+||+.||++||+++++||++..+|..+++|++++++
T Consensus         5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k   65 (65)
T 1gl2_D            5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR   65 (65)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7999999999999999999999999999999999999999999999999999999998864

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.57  E-value=7e-15  Score=103.15  Aligned_cols=60  Identities=32%  Similarity=0.463  Sum_probs=58.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL  233 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~  233 (265)
                      .+||+.|+.|+.+|++||++|.+||+||+.||++||+|+.+||++..+|..+++|+++++
T Consensus         6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll   65 (66)
T 1n7s_D            6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence            799999999999999999999999999999999999999999999999999999999875

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.55  E-value=1.2e-14  Score=107.46  Aligned_cols=62  Identities=31%  Similarity=0.425  Sum_probs=60.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK  235 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~  235 (265)
                      ++||+.|+.|+.+|++||++|.+||+||+.||++||+|+.+||++..+|..+++|+++++++
T Consensus        25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k   86 (87)
T 1sfc_D           25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS   86 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            79999999999999999999999999999999999999999999999999999999999875

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.52  E-value=1.3e-14  Score=107.06  Aligned_cols=62  Identities=23%  Similarity=0.384  Sum_probs=59.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK  235 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~  235 (265)
                      .+||+.|+.|+.+|++||++|.+||+||+.||++||.|+++||++..+|..+++|+++++++
T Consensus        26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k   87 (87)
T 1l4a_D           26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN   87 (87)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999998764

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.5e-13  Score=95.47  Aligned_cols=59  Identities=31%  Similarity=0.428  Sum_probs=57.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET  232 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~  232 (265)
                      .+||+.|++|+..+++||++|.+||+||+.||++||.|+.++|++..++..+++|++++
T Consensus         6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i   64 (64)
T 3b5n_D            6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            68999999999999999999999999999999999999999999999999999999864

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=99.29  E-value=3.8e-11  Score=92.22  Aligned_cols=73  Identities=18%  Similarity=0.226  Sum_probs=65.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDI  246 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i  246 (265)
                      ++.++++..|..++..|+++..+|+..|.+|++++|.++..++.+...+..++..+++..+..++.++|+|++
T Consensus        17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~   89 (109)
T 3hd7_B           17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMI   89 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceeh
Confidence            6788999999999999999999999999999999999999999999999999999999977766654444333

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=98.90  E-value=7.6e-09  Score=81.58  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             hhhccCCC-CChHHHHHHHHHHHHHHHHHHHhhhhh---hh---hhHHhhhhhHHHHHHHHHHHhhHHHHHHHHH--H--
Q 039173           25 QRDLNAHG-DDAFARFYATVESEIDKALLKAETASM---ET---NRAAAVAMKAEVRRTKARLLEEVPKLQKLAR--K--   93 (265)
Q Consensus        25 ~~~~~~~~-~Dpw~~~~~~~~~~l~~~l~~~~~~~~---~~---~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~--k--   93 (265)
                      |---|+.+ .|||+.+..+++..|..+.........   ..   +......+..||+..|..++++|++|++++.  +  
T Consensus        17 ~~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n   96 (130)
T 4dnd_A           17 NLYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN   96 (130)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ceeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33345544 599999998988777766433332211   10   1112345678999999999999999999972  2  


Q ss_pred             -hcCCCCHHHHHHHHHHHHHHHHHHHhcccccc
Q 039173           94 -KVKGLSKEEQETRHDLVLGLSERIEAIPDGNT  125 (265)
Q Consensus        94 -k~~~lt~~El~~R~~~v~~l~~~~~~l~~~~~  125 (265)
                       .+|+|++.|+.+|+.||..++.++..++..++
T Consensus        97 p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l~  129 (130)
T 4dnd_A           97 PGKFKLPAGDLQERKVFVERMREAVQEMKDHMV  129 (130)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             35699999999999999999999999987653

>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T

Probab=98.71  E-value=2.6e-08  Score=74.33  Aligned_cols=89  Identities=11%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 039173           32 GDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVPKLQKLARKKVKGLSKEEQETRHDLVL  111 (265)
Q Consensus        32 ~~Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~kk~~~lt~~El~~R~~~v~  111 (265)
                      +.|||+++..++++.|..+.+...+...    .....+..++...+..++++|.+|.+++.-.... ++.|+.+|+.+|.
T Consensus         4 s~DPF~~V~~D~~~ql~~l~~~~~~~~~----~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk~~v~   78 (95)
T 2c5k_T            4 SEDPFQQVVKDTKEQLNRINNYITRHNT----AGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGREAQVK   78 (95)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHTCC----C--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHccC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence            5699999999999888877554332111    1123566799999999999999999996211122 9999999999999


Q ss_pred             HHHHHHHhcccccc
Q 039173          112 GLSERIEAIPDGNT  125 (265)
Q Consensus       112 ~l~~~~~~l~~~~~  125 (265)
                      .++.+++.|+..++
T Consensus        79 ~l~~~i~~lk~~~~   92 (95)
T 2c5k_T           79 NIKQQLDALKLRFD   92 (95)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987664

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=98.52  E-value=7.3e-07  Score=63.89  Aligned_cols=70  Identities=16%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC  243 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c  243 (265)
                      ++-++.+..|..++..|+++..+|..-|.+|+++||.|+..|+.+...+..++..+++..+..++.++++
T Consensus         6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~   75 (77)
T 1jth_B            6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK   75 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            5667889999999999999999999999999999999999999999999999999999999877665554

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=98.45  E-value=1.6e-06  Score=61.06  Aligned_cols=69  Identities=14%  Similarity=0.253  Sum_probs=61.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173          175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC  243 (265)
Q Consensus       175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c  243 (265)
                      +-++.+..|...+..|+++..+|..-|.+|+++||.|+..|+.+...+..++..|.+..+..++.++|+
T Consensus         3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~   71 (71)
T 2nps_B            3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM   71 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            446788999999999999999999999999999999999999999999999999999999887766653

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.07  E-value=3.9e-05  Score=53.58  Aligned_cols=63  Identities=22%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV  236 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~  236 (265)
                      ++-++.+..|..++..|+++..++..-|.+|+++||.|+..|+.+...+..++..+++..+..
T Consensus         6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q   68 (69)
T 3b5n_B            6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSA   68 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566788999999999999999999999999999999999999999999999999999987653

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=98.01  E-value=5.4e-05  Score=54.81  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccC
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRS  238 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~  238 (265)
                      ++-++.+..|..++..|+++..+|..-|.+|+++||.|+..|+.+...+..++..|++..+..++
T Consensus        17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~   81 (83)
T 1sfc_B           17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence            56778899999999999999999999999999999999999999999999999999999887553

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=97.97  E-value=1.7e-05  Score=69.81  Aligned_cols=206  Identities=13%  Similarity=0.170  Sum_probs=106.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhhhhh------------hhHHhhhhhHHHHHHHHHHHhhHHHHHHHHHH-hcCCCCH
Q 039173           34 DAFARFYATVESEIDKALLKAETASMET------------NRAAAVAMKAEVRRTKARLLEEVPKLQKLARK-KVKGLSK  100 (265)
Q Consensus        34 Dpw~~~~~~~~~~l~~~l~~~~~~~~~~------------~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~k-k~~~lt~  100 (265)
                      +.|+....++...|..+-...+......            .+.....+..++......+...|..|+..+.. ....-++
T Consensus        31 ~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~  110 (267)
T 1dn1_B           31 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSS  110 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Confidence            3477777777766665422222111100            01112223344444455555555555544211 1123456


Q ss_pred             HHHHHHHHHHHHHHHHHHhccccccccC-------c----CC-CCCCCCCCCCCcc--cCC--CCCCCCccccCchhHHH
Q 039173          101 EEQETRHDLVLGLSERIEAIPDGNTNAT-------K----AN-GGWATSASNKNIK--FDS--DGNIGDDFFQQSEESSQ  164 (265)
Q Consensus       101 ~El~~R~~~v~~l~~~~~~l~~~~~~~~-------~----~~-~~~~~~~~~~~~~--~~~--~~~~~~~~~~~te~t~~  164 (265)
                      .+.+-|+..+..|...+.++...|...-       +    +. ...|+..+...+.  ++.  ...+....+..+.   .
T Consensus       111 ~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~---~  187 (267)
T 1dn1_B          111 ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSS---I  187 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSH---H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhH---H
Confidence            7778889999999888887766554310       0    00 0001110000000  000  0011111111222   2


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173          165 FRQEYEMRKMKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC  243 (265)
Q Consensus       165 ~qQq~~~~~~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c  243 (265)
                      .++.. ...++-++.+..|..+|..|+++..+|+.-|.+|+++||.|+..|+.+...+..++..|.+..+..++.++|.
T Consensus       188 ~~~~l-~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~  265 (267)
T 1dn1_B          188 SKQAL-SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK  265 (267)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            22221 1226778899999999999999999999999999999999999999999999999999999988887765553

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=97.95  E-value=4.8e-05  Score=52.50  Aligned_cols=59  Identities=15%  Similarity=0.324  Sum_probs=55.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET  232 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~  232 (265)
                      ++.++.+..|..++..|+++..++..-|.+|+++||.|+..|+.+...+..++..|++.
T Consensus         5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA   63 (65)
T 1gl2_B            5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA   63 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999874

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=97.91  E-value=7.2e-05  Score=52.05  Aligned_cols=60  Identities=17%  Similarity=0.279  Sum_probs=56.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL  233 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~  233 (265)
                      ++-++.+..|..++..|+++..++..-|.+|+++||.|+..|+.+...+..++..+++..
T Consensus         8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~   67 (68)
T 1n7s_B            8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566788999999999999999999999999999999999999999999999999998753

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=97.15  E-value=0.00021  Score=63.02  Aligned_cols=64  Identities=16%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVR  237 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~  237 (265)
                      ++-++.+..|..+|..|+++..+|+.-|.+|+++||.|+..|+.+...+..++..|.+..+..+
T Consensus       213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk  276 (279)
T 2xhe_B          213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQE  276 (279)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            5667899999999999999999999999999999999999999999999999999998877654

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=96.54  E-value=0.081  Score=39.83  Aligned_cols=74  Identities=15%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFCIDIILLCV  251 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ci~i~lliv  251 (265)
                      ++..+.+-+|++....+..+-..=|+-++.=..=++.....++.+...|..|.+-=++--+    +.+||++++++++
T Consensus        24 ~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk----k~~i~l~~~~i~~   97 (109)
T 3hd7_B           24 IKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR----KKIMIIICCVILG   97 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cceehHHHHHHHH
Confidence            5677888899999999999988889989988888999999999999999998766555433    4688877755443

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.08  E-value=0.13  Score=37.52  Aligned_cols=56  Identities=11%  Similarity=0.107  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173          180 LDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK  235 (265)
Q Consensus       180 Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~  235 (265)
                      |..+..-|...+.+-..=-+.+-+-++-||.|.+..+.....=..=.+..+++-++
T Consensus         7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk   62 (91)
T 3hd7_A            7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK   62 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444333334455566667777777766555444444444444444

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=95.15  E-value=0.51  Score=33.34  Aligned_cols=60  Identities=18%  Similarity=0.255  Sum_probs=50.2

Q ss_pred             hhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEG---LDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL  233 (265)
Q Consensus       174 ~eqD~~Ld~l~~~---v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~  233 (265)
                      .-+++.++.+..+   +....++|..+-.+|..|.+.|+.++..++.++..|+.+.+.|+.+-
T Consensus        16 ~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           16 QLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            4566666666554   45677799999999999999999999999999999999999888764

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=94.43  E-value=0.35  Score=31.58  Aligned_cols=47  Identities=17%  Similarity=0.239  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173          185 EGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE  231 (265)
Q Consensus       185 ~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~  231 (265)
                      ..+....++|..+-.+|..|.+.|+.++..+|..+..|+.+.+.|+.
T Consensus         7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~   53 (54)
T 1nhl_A            7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence            34556778899999999999999999999999999999999887753

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=94.15  E-value=0.13  Score=36.81  Aligned_cols=58  Identities=22%  Similarity=0.299  Sum_probs=47.1

Q ss_pred             hhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039173          174 MKQDQGLDVISEGLD---TLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKE  231 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~---~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~  231 (265)
                      .-+++.++.....+.   .-.+.|..--.+|..|++.|+.++..+|..+..|+.+.+.|+.
T Consensus        20 ~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~   80 (83)
T 1l4a_C           20 QVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG   80 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456777877665554   4555888888999999999999999999999999988776654

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=92.52  E-value=0.014  Score=50.08  Aligned_cols=70  Identities=16%  Similarity=0.212  Sum_probs=50.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCchH
Q 039173          174 MKQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKVRSSRNFC  243 (265)
Q Consensus       174 ~eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~c  243 (265)
                      ++-...|..|...|..+.++...|..-+.+|..+++.|+..|+.+...+..++..+.+..+..++.++|-
T Consensus       208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk  277 (279)
T 3c98_B          208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK  277 (279)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            4667889999999999999999999999999999999999999999999999999999888877666664

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=92.26  E-value=1.6  Score=30.05  Aligned_cols=57  Identities=11%  Similarity=0.153  Sum_probs=45.3

Q ss_pred             hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 039173          177 DQGLDVISEGL---DTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETL  233 (265)
Q Consensus       177 D~~Ld~l~~~v---~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~  233 (265)
                      ++.++.-...+   ..-.+.|..--.+|..|.+.|+.++..+|..+..++.+.++++.+-
T Consensus         8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk   67 (70)
T 3b5n_C            8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34455444443   3445577788889999999999999999999999999999998763

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=91.44  E-value=1.4  Score=29.81  Aligned_cols=56  Identities=13%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 039173          177 DQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKET  232 (265)
Q Consensus       177 D~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~  232 (265)
                      .+.|..-...+....++|..|-.+|..|.+-|......++.++..|..+.+-|+.+
T Consensus         8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m   63 (65)
T 1gl2_C            8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSM   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhh
Confidence            35566666778888999999999999999999999999999999999999877654

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=91.25  E-value=2.3  Score=29.95  Aligned_cols=62  Identities=13%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Q 039173          175 KQDQGLDVISEGLDTLKNLALDMNEELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLKV  236 (265)
Q Consensus       175 eqD~~Ld~l~~~v~~lk~~a~~i~~El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~~  236 (265)
                      .-.+.|..-...+..-.++|..|-.+|..|.+-|....+.++.+++.|..+.+-|+.+....
T Consensus        16 rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~   77 (81)
T 2nps_C           16 RSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI   77 (81)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence            44567777778888999999999999999999999999999999999999999999887764

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=89.64  E-value=4.4  Score=29.14  Aligned_cols=7  Identities=14%  Similarity=0.434  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 039173          223 KNNNVRL  229 (265)
Q Consensus       223 ~~~~~~l  229 (265)
                      .+..+++
T Consensus        53 ~~~A~~l   59 (91)
T 3hd7_A           53 ETSAAKL   59 (91)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=88.98  E-value=0.046  Score=41.96  Aligned_cols=36  Identities=11%  Similarity=0.110  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039173          200 ELDRQVPLIDEIDTKVDKATSDLKNNNVRLKETLLK  235 (265)
Q Consensus       200 El~~Q~~lLd~l~~~vd~~~~~l~~~~~~l~~~~~~  235 (265)
                      .+-+-++-||.|.++.+.....=..=.+..+++.++
T Consensus        55 kvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rk   90 (119)
T 2kog_A           55 KVLERDQKLSELDDRADALQAGASQFETSAAKLKRK   90 (119)
T ss_dssp             HHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556777777777666444333334444444444

>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.87  E-value=5.7  Score=28.06  Aligned_cols=70  Identities=17%  Similarity=0.318  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhhccCchH-hhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHhhhhhHHHHHHHHHHHhhHH
Q 039173            7 LFRLDDICKKYDKYDIE-KQRDLNAHGDDAFARFYATVESEIDKALLKAETASMETNRAAAVAMKAEVRRTKARLLEEVP   85 (265)
Q Consensus         7 ~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dpw~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~eiR~~l~~l~~~l~   85 (265)
                      |.+++.|++|....-++ ....   ..+|+|+-.    +.+|..++...++....+|        +.||..-+...-++.
T Consensus         9 i~~Ie~v~~r~r~l~~ell~~~---~~s~~yl~~----k~eLq~Li~~LDev~~~~N--------pcIReaRRrAV~EvQ   73 (89)
T 2d9d_A            9 ILKIEKVLKRMREIKNELLQAQ---NPSELYLSS----KTELQGLIGQLDEVSLEKN--------PCIREARRRAVIEVQ   73 (89)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCS---CTTTHHHHH----HHHHHHHHHHHGGGCSCSS--------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc---CchHHHhhh----HHHHHHHHHHHhhcccCCC--------hHHHHHHHHHHHHHH
Confidence            45666666666555444 2222   225777666    7777777777776544444        478888888888888


Q ss_pred             HHHHHH
Q 039173           86 KLQKLA   91 (265)
Q Consensus        86 ~L~~~l   91 (265)
                      .|-..+
T Consensus        74 ~lit~l   79 (89)
T 2d9d_A           74 TLITYI   79 (89)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1lvfa_	106	Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu	98.73

>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=4.1e-08  Score=72.96  Aligned_cols=93  Identities=13%  Similarity=0.140  Sum_probs=69.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhhhhh------hhhhHHhhhhhHHHHHHHHHHHhhHHHHHHHHH--H---hcCCCCHH
Q 039173           33 DDAFARFYATVESEIDKALLKAETASM------ETNRAAAVAMKAEVRRTKARLLEEVPKLQKLAR--K---KVKGLSKE  101 (265)
Q Consensus        33 ~Dpw~~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~~~~~eiR~~l~~l~~~l~~L~~~l~--k---k~~~lt~~  101 (265)
                      .|||+.+..+++..+..+.........      ..+......+..+++..|..++++|++|++++.  .   .+|+|++.
T Consensus         1 eDPF~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~   80 (106)
T d1lvfa_           1 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDAT   80 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHH
Confidence            499999988888666654322221110      011112345678999999999999999999972  1   45799999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccc
Q 039173          102 EQETRHDLVLGLSERIEAIPDGNT  125 (265)
Q Consensus       102 El~~R~~~v~~l~~~~~~l~~~~~  125 (265)
                      |+.+|+.||...+.++.++++.++
T Consensus        81 ei~~Rr~fi~~~~~~I~~~~~~l~  104 (106)
T d1lvfa_          81 ELSIRKAFITSTRQIVRDMKDQMS  104 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999987654