Citrus Sinensis ID: 039186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MTVLTPNPSRSIFNPMICDHGVVNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSGSGGFVLGRNHNHHLYE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccEEEEEcHHHcccccccccccEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccEEEEcHcccccccccccEEEEEEccccccccEEEcccccccccHHHHHHHHHccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEEccccccccccEcccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mtvltpnpsrsifnpmicdhgVVNFLFLFLYLHalpyvtaqtpppppdafsvtgpkfngtMAIVTVILVSVFFILGFFSVYIRQCtergrnspdAFATIIGginqrsrrgarglddsvintFPTFLYSAVRELKIGKGSLECAVCLnefgdeetlrlipkcshvfHMDCIDAWLSahntcpvcranlvpqpgetpssfipvlnpdvgssrleqgsdniqeisstdvqrrdeeapdviltnqnrpprsrsigwrrpsgwfprshstghsvvqpgqdcerftlrLPAEVRSQLMNsslsrskscvafpsvrssrrgfrsgsggfvlgrnhnhhlye
Flexible Loop (DISEMBL)
mtvltpnpsrsifnpmICDHGVVNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAfatiigginqrsrrgarglddsvINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNiqeisstdvqrrdeeapdviltnqnrpprsrsigwRRPSGWFPRShstghsvvqpgqdCERFTLRLPAEVRSQLmnsslsrskscvafpsvrssrrgfrsgsggfvlgrnhnhhlye
Low Complexity Region (SEG)
MTVLTPNPSRSIFNPMICDHGVVNFLFLFLYLHALPYVTAQTpppppDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPsvrssrrgfrsgsggfvlgrNHNHHLYE
Disordered region (IsUnstruct)
***********IFNPMICDHGVVNFLFLFLYLHALPYVT****************KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV**************************************************************************************************************************************************
Disordered Region (DISOPRED)
**********SIFNPMICDHGVVNFLFLFLYL**************************GTMAIVTVILVSVFFILGFFSVYIRQCTE******************************VINTFPTFLYSAV*******GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP*******************************************************************************VVQPGQDCERFTLRLPAEVRSQL*******************************************
Disordered Region (DISEMBL)
MTVLTPNPSRSIFNPMICDHGVVNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQL***********************FRSGSGGFVLGRNHNHHLYE
Disordered Region (DISPRO)
****TPNPSRSIFNPMICDHGVVNFLFLFLYLHALPYVTAQTP***********PKFNGTMAIVTVILVSVFFILGFFSVYIRQCTER************************GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV*************************************************************************************QDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSV*****************RNHNH****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVLTPNPSRSIFNPMICDHGVVNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSGSGGFVLGRNHNHHLYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q84W40	404	RING-H2 finger protein AT	yes	no	0.787	0.650	0.492	3e-61
Q8RXX9	398	E3 ubiquitin-protein liga	no	no	0.832	0.698	0.447	9e-58
Q9SK92	381	E3 ubiquitin-protein liga	no	no	0.775	0.679	0.470	9e-57
Q9C7I1	327	RING-H2 finger protein AT	no	no	0.841	0.859	0.407	8e-54
Q9M0R5	345	Putative RING-H2 finger p	no	no	0.757	0.733	0.421	2e-51
Q8LGA5	368	E3 ubiquitin-protein liga	no	no	0.691	0.627	0.434	3e-49
O64763	378	E3 ubiquitin-protein liga	no	no	0.700	0.619	0.448	8e-48
Q9M0R4	357	Putative RING-H2 finger p	no	no	0.625	0.585	0.480	6e-46
O64762	302	RING-H2 finger protein AT	no	no	0.643	0.711	0.435	1e-43
Q8W571	323	RING-H2 finger protein AT	no	no	0.781	0.808	0.373	2e-41

>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2

 Score =  235 bits (600), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 138/280 (49%), Positives = 177/280 (63%), Gaps = 17/280 (6%)

Query: 56  KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLD 115
           +F+ TMAI+ ++LVSVFF LGFFSVYIR+C ER            G     +R+ ARGLD
Sbjct: 58  RFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLD 117

Query: 116 DSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS 175
            S+I TFPTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH  CIDAWL 
Sbjct: 118 ASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLR 177

Query: 176 AHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAP 234
           +H TCP+CRA+L+P PGE+  S  IP L  D   S  +   D I+ + S D +  +  A 
Sbjct: 178 SHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGS--DPNGDRIRSLGSPDARLIESVA- 234

Query: 235 DVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNS 294
             +  NQ+ P RS S GW   +G F  S  TG    Q  ++ +RFTLRLP ++ ++L+N 
Sbjct: 235 --LTCNQSMPRRSMSTGWNL-AGMFTNSDRTG----QHSENLDRFTLRLPQDIHNKLVNP 287

Query: 295 SLSRSKSCVAFPSVRSSRRGFRSGSGGFVLGRNHNHHLYE 334
           +L  SK  VA P V SS RG+R+GS    LG   N+  YE
Sbjct: 288 NL--SKVHVALPQVMSSTRGYRTGS----LGSERNYFYYE 321

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2

 Score =  224 bits (570), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 133/297 (44%), Positives = 175/297 (58%), Gaps = 19/297 (6%)

Query: 21  GVVNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSV 80
           GV+  +FL L L +     +Q+ P P +     G + +  MA++ VIL++  F +GFFS+
Sbjct: 11  GVLPIVFL-LILSSADLAASQSQPGPTNQPYNYG-RLSPAMAVIVVILIAALFFMGFFSI 68

Query: 81  YIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKG 138
           Y R C+      PDA  +  GG   R+     ARGLD SV+ TFPTFLYS V+  K+GKG
Sbjct: 69  YFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKG 124

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF 198
            LECA+CLNEF D+ETLRL+PKC HVFH  CIDAWL AH TCPVCRANL  Q  E  S  
Sbjct: 125 ELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGESVE 184

Query: 199 IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGW 258
                PD+    L+Q   N + + +  V       P+ ++T++    R   +        
Sbjct: 185 PGGTEPDL---ELQQVVVNPEPVVTAPV-------PEQLVTSEVDSRRLPGVPVDLKRVK 234

Query: 259 FPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNS-SLSRSKSCVAFPSVRSSRRG 314
           F RSH+TGHSVVQPG+  ERFTLRLP +VR ++M    L+R+ S +  P   SSRRG
Sbjct: 235 FSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGSSRRG 291

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the plant C/N response and the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1

 Score =  221 bits (562), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 135/287 (47%), Positives = 175/287 (60%), Gaps = 28/287 (9%)

Query: 57  FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGG-----INQRSRRGA 111
           F+ T AI+ ++LVSVFF LG  SVY+R+C +       A     GG     +N R +   
Sbjct: 35  FSPTTAIIMIVLVSVFFALGCISVYMRRCLQH------ALGMDSGGGPGNWLNVR-QTTE 87

Query: 112 RGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCID 171
            GLD SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH  CID
Sbjct: 88  PGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCID 147

Query: 172 AWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRR 229
           AWL +  TCP+CRANLVP PGE+ SS IP L  + G + L    D+ ++  ++S D +  
Sbjct: 148 AWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDDNRKRVLTSPDERLI 207

Query: 230 DEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRS 289
           D  A      NQ+ P +S S GW+    + P S     S  QP ++ +R+TLRLP E+  
Sbjct: 208 DSVA---WTGNQSMPRKSMSTGWKLAELYSPAS-----SPGQPEENLDRYTLRLPQEIHD 259

Query: 290 QLMNSSLSR--SKSCVAFPSVRSSRRGFRSGSGGFVLGRNHNHHLYE 334
           QL+NSSL +  SK  +A P  RSS RGFR+GS    LG   N+  +E
Sbjct: 260 QLVNSSLGKQGSKGQLALPQERSSVRGFRTGS----LGTEKNYFYFE 302

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2 SV=1

 Score =  211 bits (536), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 172/324 (53%), Gaps = 43/324 (13%)

Query: 14  NPMICDHGVVNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFF 73
           +P++  H V+  L L L +          PP     +    P       +  VI+  + F
Sbjct: 6   SPILLHHHVIFLLLLVLQVSGQHQPRTTAPP-----YIAQRPN-----QVPAVIIAMLMF 55

Query: 74  ILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQR--SRRGARGLDDSVINTFPTFLYSA 129
            L F  +    C +    SP   +  T  GG  +   +RR +RGL   VIN+FP+FLYS 
Sbjct: 56  TLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQ 115

Query: 130 VRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189
           V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH  CID WLS+ +TCPVCRA+L P
Sbjct: 116 VKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPP 175

Query: 190 QPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVIL---------TN 240
           +PG   +S  P + P           +   ++ +   +R   E+PDV L         T 
Sbjct: 176 KPGSDQNSLYPFIRPH---------DNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTG 226

Query: 241 QNRPPRSRSIG---WRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLS 297
            N PPRSRS G   WR     FPRSHSTGHS+V   ++ +RFTL+LP EVR QL +    
Sbjct: 227 ANTPPRSRSTGLSNWRITELLFPRSHSTGHSLVPRVENLDRFTLQLPEEVRRQLSHMK-- 284

Query: 298 RSKSCVAFPSVRSSRRGFRSGSGG 321
                   P  RSSR G+RSGS G
Sbjct: 285 ------TLPQARSSREGYRSGSVG 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana GN=ATL36 PE=3 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/306 (42%), Positives = 173/306 (56%), Gaps = 53/306 (17%)

Query: 37  YVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFS-----VYIRQCTERGRN 91
           YVT Q    P ++   T    +   +I+ ++++++F  LG  S     ++ R+  E G  
Sbjct: 28  YVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSCCLHCIFYRE--EIGAA 82

Query: 92  SPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGD 151
             D   +          R  RGL+  VI +FPTFLYS V+ LKIGKG +ECA+CL+EF D
Sbjct: 83  GQDVLHS----------RARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFED 132

Query: 152 EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRL 211
           +ETLR +P CSH FH +CID WLS+ +TCPVCRANL  +PGE+     P LN DV     
Sbjct: 133 QETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YPYLNMDV----- 183

Query: 212 EQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIG----WRRPSGWFPRSHSTGH 267
           E G           VQ+   E     LT  +   RSRS G    WR    + PRSHSTGH
Sbjct: 184 ETGG----------VQKLPNERS---LTGNSVTTRSRSTGLLSSWRMAEIFVPRSHSTGH 230

Query: 268 SVVQP-GQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSGS-----GG 321
           S+VQ  G++ +RFTL+LP EV+ QL++ +L R +S +  P   SSR+G+RSGS     GG
Sbjct: 231 SLVQQLGENLDRFTLQLPEEVQRQLVSLNLIR-RSHIVLPQAVSSRQGYRSGSVGSERGG 289

Query: 322 FVLGRN 327
           F  GR 
Sbjct: 290 FSQGRQ 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/276 (43%), Positives = 155/276 (56%), Gaps = 45/276 (16%)

Query: 42  TPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIG 101
           TP    D ++ +G   +  MA+V V++++  F +GFF+VYIR CT     + D   T  G
Sbjct: 27  TPDQRHDPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHCT----GAVDGSVTPAG 81

Query: 102 GINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIP 159
           G  +R      ARGLD   I TFPTF+YS V+  KIGKG+LECA+CLNEF D+ETLRL+P
Sbjct: 82  GARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLP 141

Query: 160 KCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQ 219
           KC HVFH  CI AWL  H TCPVCR NL  Q  E          P+V             
Sbjct: 142 KCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE----------PEV------------- 178

Query: 220 EISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERF 279
            +  TD++ + + A  V +      PR +          FPRSH+TGHSVV PG+  +RF
Sbjct: 179 -VVETDLEAQQQSAVPVPVVEL---PRVK----------FPRSHTTGHSVVLPGESTDRF 224

Query: 280 TLRLPAEVRSQLM-NSSLSRSKSCVAFPSVRSSRRG 314
           TLR+P E+R ++M N  L+RS S    P   SSR G
Sbjct: 225 TLRVPEELRKKIMANWKLNRSNSVFVLPRGGSSRSG 260

E3 ubiquitin-protein ligase that is required for the plant C/N response during seedling growth transition. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1

 Score =  191 bits (484), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 144/245 (58%), Gaps = 11/245 (4%)

Query: 58  NGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGL 114
           N  + +V  +L  V F + F S++ R+   +   S    +T     +Q  R RR  ARGL
Sbjct: 48  NDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGL 107

Query: 115 DDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL 174
           D   I TFPTFLYS V+ ++IGKG +ECAVCL EF D+ETLRL+P C HVFH DC+D WL
Sbjct: 108 DAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWL 167

Query: 175 SAHNTCPVCRANLV-PQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEA 233
           S H+TCP+CRA+LV  Q G+   S       D G+       +    + S+D    D   
Sbjct: 168 SEHSTCPLCRADLVLNQQGDDDDSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDA-- 225

Query: 234 PDVILTNQNRPPRSRSIG---WRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQ 290
             V  +N N  PRS+S G   W+     FPRSHSTGHS++QP  + +RFTLRLP +VR Q
Sbjct: 226 --VTWSNSNITPRSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQ 283

Query: 291 LMNSS 295
           LM +S
Sbjct: 284 LMKTS 288

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana GN=ATL37 PE=3 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 109/227 (48%), Positives = 140/227 (61%), Gaps = 18/227 (7%)

Query: 101 GGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPK 160
           GG      R  RG+D  VI +FP FLYS V+  KIG G +ECA+CL EF DEE LR +P 
Sbjct: 79  GGHEVLHSRVRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPP 138

Query: 161 CSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQE 220
           CSH FH +CID WLS+ +TCPVCRANL  + G++     P  + DV +   ++G   +QE
Sbjct: 139 CSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDS----FPHPSMDVETGNAQRG---VQE 191

Query: 221 ISSTDVQRRDEEAPDVILTNQNR--PPRSRSIG----WRRPSGWFPRSHSTGHSVVQPGQ 274
             S D   R      V   N      PRSRS G    W  P  + PRSHSTGHS+VQP Q
Sbjct: 192 --SPD--ERSLTGSSVTCNNNANYTTPRSRSTGLLSSWHVPELFLPRSHSTGHSLVQPCQ 247

Query: 275 DCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSGSGG 321
           + +RFTL+LP EV+ QL++ +L + +S +A P  RSSR+G+RSGS G
Sbjct: 248 NIDRFTLQLPEEVQRQLVSLNLIK-RSHIALPRARSSRQGYRSGSVG 293

Arabidopsis thaliana (taxid: 3702)

>sp|O64762|ATL38_ARATH RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2 SV=1

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 139/241 (57%), Gaps = 26/241 (10%)

Query: 60  TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGA-RGLDDSV 118
           T+ ++T+IL ++F I+G  SV  R  + +  +           +  R+   A RGLD+++
Sbjct: 14  TLLVITIILFAIF-IVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAI 72

Query: 119 INTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN 178
           IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+  WLS H+
Sbjct: 73  INSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHS 132

Query: 179 TCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVIL 238
           TCP+CR +L  QPGE        LNP+               + ST+    D     V  
Sbjct: 133 TCPLCRVDLCLQPGER-----SYLNPEPDL------------VESTNSHLFD----GVTW 171

Query: 239 TNQNRPPRSRSI---GWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSS 295
           TN+NRP RS S      R       RSHSTGHSVVQP  + +RFTLRLP EVR QL   +
Sbjct: 172 TNRNRPSRSWSTRLSQCRVSQILISRSHSTGHSVVQPLDNLDRFTLRLPEEVRRQLTKKT 231

Query: 296 L 296
           +
Sbjct: 232 V 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 157/297 (52%), Gaps = 36/297 (12%)

Query: 25  FLFLFLYLHALPYVTAQT-PPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIR 83
           ++ L + +       AQ+  P PPD  +   P    +   V  +LV++FF+ G  SVYIR
Sbjct: 13  WIILHVAIIIQSKANAQSFSPSPPDLQTGHTP----SKTTVFAVLVTLFFLTGLLSVYIR 68

Query: 84  QCTERGRNSPDAFATIIG--GINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLE 141
            C    R++PD+          +  SRRG  GLD++V+ +FP F YS+V+E KIG   LE
Sbjct: 69  HC---ARSNPDSSTRYFRNRANDGSSRRG--GLDNAVVESFPVFAYSSVKESKIGSKDLE 123

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPV 201
           CA+CLNE  D ET+RL+P C+H+FH+DCID WL +H TCPVCR+NL  +           
Sbjct: 124 CAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAK----------- 172

Query: 202 LNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPR 261
                 S++     D +   +  D    D E  +V  ++  R   S  I     SG FPR
Sbjct: 173 ------SNKPGDEDDGVPLAAMRDHVVVDIETVEVAKSHHRRL--SSEI-----SGKFPR 219

Query: 262 SHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSG 318
           S+STGHS+ +     ERFTLRLP +V+ +LM     R K   +F    ++    RSG
Sbjct: 220 SNSTGHSMDRFSDGTERFTLRLPDDVKMRLMAVKGRRLKRTRSFDVDLTAEHYCRSG 276

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
255545852	436	zinc finger protein, putative [Ricinus c	0.928	0.711	0.505	2e-79
225459193	409	PREDICTED: RING-H2 finger protein ATL11	0.838	0.684	0.55	2e-78
449470088	369	PREDICTED: RING-H2 finger protein ATL11-	0.880	0.796	0.522	1e-74
224084608	436	predicted protein [Populus trichocarpa]	0.874	0.669	0.513	4e-72
225451024	420	PREDICTED: E3 ubiquitin-protein ligase A	0.871	0.692	0.490	5e-68
357441591	373	RING finger family protein [Medicago tru	0.757	0.678	0.533	1e-67
356510149	340	PREDICTED: RING-H2 finger protein ATL11-	0.784	0.770	0.516	4e-67
356518453	334	PREDICTED: RING-H2 finger protein ATL11-	0.769	0.769	0.522	4e-67
28558782	379	RING/c3HC4/PHD zinc finger-like protein	0.835	0.736	0.487	1e-66
449442843	379	PREDICTED: E3 ubiquitin-protein ligase A	0.835	0.736	0.484	2e-66

>gi|255545852|ref|XP_002513986.1| zinc finger protein, putative [Ricinus communis] gi|223547072|gb|EEF48569.1| zinc finger protein, putative [Ricinus communis]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 173/342 (50%), Positives = 227/342 (66%), Gaps = 32/342 (9%)

Query: 19  DHGVVNFLFLFLYLHALPYVTAQ---TPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFIL 75
           +HG++    LF+ L+  P+ +AQ   T PP  +  +   P FN ++AI+ VI+VS FF++
Sbjct: 12  NHGLLVVKLLFI-LYTSPFTSAQQESTTPPTLEPLA-PAPSFNPSLAILMVIIVSAFFVM 69

Query: 76  GFFSVYIRQCTERGRNSPDAF---ATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRE 132
           GFFSVYIRQC +R       F   A+ IGG  + SRR  +GLD  VINTFPTFLYS V+ 
Sbjct: 70  GFFSVYIRQCADRRYRRGSNFNPSASPIGGGGRWSRRRQQGLDPEVINTFPTFLYSTVKG 129

Query: 133 LKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG 192
            KIGK SLECAVCLNEF D++TLRL PKCSHVFH DCIDAWL+++ TCPVCRANLVP+PG
Sbjct: 130 HKIGKESLECAVCLNEFEDDQTLRLTPKCSHVFHPDCIDAWLASNTTCPVCRANLVPKPG 189

Query: 193 ETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQR-----------------RDEEAPD 235
           +     +    P+  ++      D +QE  + + Q                  +++++PD
Sbjct: 190 DLAFDSVSFFEPN-NTNNTSVEPDQLQERPNDETQNGVLIRVSDDHDRSRPEVQNQQSPD 248

Query: 236 VI---LTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLM 292
           VI     +QNRPPRS S GWR  +  FPRSHSTGHS+VQPG++ +RFTLRLP +VRSQL+
Sbjct: 249 VISLSTASQNRPPRSWSTGWRF-ARLFPRSHSTGHSLVQPGENLDRFTLRLPEDVRSQLL 307

Query: 293 NSSLSRSKSCVAFPSVRSSRRGFRSGSGGFVLGRNHNHHLYE 334
           N+ L+R+KSCVAFP   SS++G+RS SGG   GR  N + YE
Sbjct: 308 NTHLNRAKSCVAFPRASSSKKGYRSRSGGGWRGR--NFYFYE 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459193|ref|XP_002284024.1| PREDICTED: RING-H2 finger protein ATL11 [Vitis vinifera]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 165/300 (55%), Positives = 204/300 (68%), Gaps = 20/300 (6%)

Query: 39  TAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTER---GRNSPDA 95
           TA    PPP        KFN +MAIV + +VS FF +GFFSVY+RQC ER   GR     
Sbjct: 41  TAAEQSPPPSELMSLAQKFNPSMAIVMIAIVSAFFFMGFFSVYLRQCIERRVRGR----- 95

Query: 96  FATIIGGIN-QRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEET 154
           F T I GI   RS   ARGL+ S I  FPTF+YSAV+  KIGK  LECAVCLNEF D+ET
Sbjct: 96  FNTEIVGIGGHRSWMAARGLNSSDIERFPTFVYSAVKAHKIGKEGLECAVCLNEFEDDET 155

Query: 155 LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQG 214
           LRL+PKC+HVFH DCID WL++H TCPVCRANL P+PGE   + +P+  P+  S      
Sbjct: 156 LRLLPKCNHVFHSDCIDLWLASHVTCPVCRANLTPKPGEKFCAPVPIFGPETESDE---- 211

Query: 215 SDNIQEISSTDVQ---RRDEEAPDVILTNQ---NRPPRSRSIGWRRPSGWFPRSHSTGHS 268
           SD   EI  T  Q     D ++PDV+   +   NRPPRSRSI   R +G FPRSHSTGHS
Sbjct: 212 SDTRVEIVETPNQVPIAVDAQSPDVMNHGRDTPNRPPRSRSI-RARITGMFPRSHSTGHS 270

Query: 269 VVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSGSGGFVLGRNH 328
           ++QPG++ ERFTLRLP E+R+Q+MN+SLSR+KS VA P V+SS+RG+R+ S G + G+ +
Sbjct: 271 LIQPGENRERFTLRLPEEIRNQIMNTSLSRTKSWVALPGVQSSKRGYRANSVGSLRGKTY 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470088|ref|XP_004152750.1| PREDICTED: RING-H2 finger protein ATL11-like [Cucumis sativus] gi|449513102|ref|XP_004164231.1| PREDICTED: RING-H2 finger protein ATL11-like [Cucumis sativus]

 Score =  286 bits (731), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 161/308 (52%), Positives = 208/308 (67%), Gaps = 14/308 (4%)

Query: 23  VNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYI 82
           VN +F++  L +   +TA     PPD +       +  MA+V ++LV  F ++   SVY 
Sbjct: 9   VNHVFIYFILLSHVSLTAAQSGAPPDMYPFK-QTISKRMAVVLIVLVCFFIVVAVLSVYT 67

Query: 83  RQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLEC 142
           RQCTE+           + G N RSRR ARGLD +VI TFPTF+YS V++LKIGKGSLEC
Sbjct: 68  RQCTEQRFGGRLLLPAPLDGTNARSRRAARGLDAAVIATFPTFVYSNVKDLKIGKGSLEC 127

Query: 143 AVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVL 202
           A+CL+EFGD++TLRL+PKCSHVFH DCIDAWL +H+TCPVCRA+LVP+PG+   SF  +L
Sbjct: 128 AICLSEFGDDDTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDI--SFAALL 185

Query: 203 NPDV---GSSRLEQGSDNIQEISSTDVQRRDE-EAPDVILT------NQNRPPRSRSIGW 252
           N D    G+ R E       E +   VQ  +E +  DV L       NQ+R  RSRS GW
Sbjct: 186 NSDSGIDGNGRDEGNRGTGSENNQVVVQIPEENQGQDVNLITPNQGLNQSRSIRSRSSGW 245

Query: 253 RRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSR 312
           R  SG FPRSHSTGHS+VQ G D ER+TLRLP EVRS+L+NS+L+R++SCVAF  ++SSR
Sbjct: 246 RL-SGLFPRSHSTGHSLVQRGMDYERYTLRLPEEVRSELLNSNLNRARSCVAFQRMQSSR 304

Query: 313 RGFRSGSG 320
           +G+R+  G
Sbjct: 305 QGYRNELG 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084608|ref|XP_002307356.1| predicted protein [Populus trichocarpa] gi|222856805|gb|EEE94352.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 166/323 (51%), Positives = 212/323 (65%), Gaps = 31/323 (9%)

Query: 34  ALPYVTAQTPPPP-PDAFSVT-GPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTER--- 88
           A P   +  PPPP PD  + T  PK N  MAI+ V+LVSVFF+LGFFSVY+RQC +R   
Sbjct: 33  AQPARNSSMPPPPTPDNQNSTPQPKVNPLMAILMVVLVSVFFLLGFFSVYVRQCADRRFR 92

Query: 89  -GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLN 147
             R  P AFA    G  + S RG  GL+  VI+TFPTFLYS V+ LKIG+GSLECAVCL 
Sbjct: 93  GTRFDPAAFA----GAGRGSWRGNHGLEQEVIDTFPTFLYSTVKGLKIGEGSLECAVCLI 148

Query: 148 EFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVG 207
           EF D++TLRLIPKCSHVFH DCIDAWL++H TCPVCRANLVP+PG+ P  F PV   D  
Sbjct: 149 EFEDDQTLRLIPKCSHVFHPDCIDAWLTSHVTCPVCRANLVPKPGDLP--FNPVHVDDPK 206

Query: 208 SSRLEQGS-DNIQEISSTDVQ------------RRDEEAPDVILT---NQNRPPRSRSIG 251
           +  +E  S DN+ + +  +VQ            ++   +P++ L+   NQNRP +S S G
Sbjct: 207 NDLVEPDSHDNVPDETQNEVQIHIRNEITREGRQQITRSPNMNLSSPVNQNRPLQSWSTG 266

Query: 252 WRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSS 311
           WR  +    RS+S  +S++Q  ++ ERFTLRLP EV +QL+NS L+R+KSC +F    S 
Sbjct: 267 WRL-NALISRSNSINNSLIQSEENRERFTLRLPQEVHNQLINSRLNRTKSCGSFSRAMSP 325

Query: 312 RRGFRSGSGGFVLGRNHNHHLYE 334
           RRG+RS SGG   GR+ N   +E
Sbjct: 326 RRGYRSRSGG--AGRSKNLFYHE 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451024|ref|XP_002284899.1| PREDICTED: E3 ubiquitin-protein ligase ATL6 isoform 1 [Vitis vinifera] gi|147843962|emb|CAN83712.1| hypothetical protein VITISV_011102 [Vitis vinifera]

 Score =  264 bits (674), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 159/324 (49%), Positives = 201/324 (62%), Gaps = 33/324 (10%)

Query: 20  HGVVNFLFLFLYLHALPYVTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFS 79
           HG V+   L++ L  LP+  AQ+     D +     +F+ +MAI+ VILV+  F++GFFS
Sbjct: 29  HGTVS---LWILLLLLPFAGAQSDTSN-DPYQQQ--RFSSSMAIIIVILVAALFLMGFFS 82

Query: 80  VYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGS 139
           VYIR C++  RN     A     +  RSRRG RGLD +V+ TFPTF YS V+ LKIGKG 
Sbjct: 83  VYIRHCSD-SRNGGSIRAAAGAALG-RSRRGTRGLDQAVLETFPTFEYSVVKGLKIGKGV 140

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFI 199
           LECAVCLNEF D ETLRLIPKC HVFH +CIDAWL++H TCPVCRANL      T  S  
Sbjct: 141 LECAVCLNEFEDNETLRLIPKCDHVFHPECIDAWLASHVTCPVCRANLTEPAVPTDYSAA 200

Query: 200 PVLNPDVGSSRLEQGSDNIQEISS------------TDVQRRDEEAPDVILTN----QNR 243
                  G S    G D   EI++            TDVQ    +APDVI  N    QNR
Sbjct: 201 VEAAESAGESD-HDGEDRRSEINAVREVSIRVADDETDVQ----QAPDVINPNQSLHQNR 255

Query: 244 PPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCV 303
           PPRS+S   R+    FPRSHSTGHS++QPG++CERFTL+LP +VR Q+M  +L+R+ S +
Sbjct: 256 PPRSKSTRPRK----FPRSHSTGHSLIQPGENCERFTLKLPEDVRKQIMKRALNRTTSLL 311

Query: 304 AFPSVRSSRRGFRSGSGGFVLGRN 327
             P   SSR+G+R+   G   G+N
Sbjct: 312 VLPRDGSSRQGYRTAGEGSSRGKN 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441591|ref|XP_003591073.1| RING finger family protein [Medicago truncatula] gi|355480121|gb|AES61324.1| RING finger family protein [Medicago truncatula] gi|388512099|gb|AFK44111.1| unknown [Medicago truncatula]

 Score =  263 bits (671), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/268 (53%), Positives = 182/268 (67%), Gaps = 15/268 (5%)

Query: 60  TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVI 119
           +MAI+ VILV+  F++GFFS+YIR+C   G +  ++   + GG+  RSRR ARGLD SVI
Sbjct: 48  SMAIIIVILVAALFLMGFFSIYIRRC---GDSPSNSIRNMAGGLAGRSRRAARGLDASVI 104

Query: 120 NTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNT 179
            TFP F YS V+  KIGKG+LECAVCLNEF + ETLRLIPKC HVFH +CID WL +H T
Sbjct: 105 ATFPIFEYSTVKIHKIGKGALECAVCLNEFEESETLRLIPKCDHVFHPECIDEWLGSHTT 164

Query: 180 CPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEI----SSTDVQRRDEEAPD 235
           CPVCRANLVPQPGE+    IP +N +     +E  +D ++ +    ++    + D   P+
Sbjct: 165 CPVCRANLVPQPGESVHG-IPSINTE--PQDIEAQNDAVESVHEHQNADGSVKVDPTEPE 221

Query: 236 VILTNQ--NRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQ-LM 292
           V+  +Q  NR  R+R     RP  WF RSHSTGHS+VQPG++ ERFTLRLP EVR Q L 
Sbjct: 222 VLTVSQTLNR-NRTRGSQSGRPR-WFQRSHSTGHSLVQPGENTERFTLRLPVEVRKQILQ 279

Query: 293 NSSLSRSKSCVAFPSVRSSRRGFRSGSG 320
           N  L R++S V  P   SSRRG+R+G G
Sbjct: 280 NPELHRARSLVVLPRETSSRRGYRTGGG 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510149|ref|XP_003523802.1| PREDICTED: RING-H2 finger protein ATL11-like [Glycine max]

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 154/298 (51%), Positives = 182/298 (61%), Gaps = 36/298 (12%)

Query: 36  PYVTAQ-----TPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGR 90
           P  TAQ     TPPP  D F  T  KF+ +MAIV +ILV VFFILGF SVY RQC ER  
Sbjct: 27  PQATAQPPNTLTPPPQQDRF--TRLKFDKSMAIVLLILVVVFFILGFLSVYTRQCAERRM 84

Query: 91  NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFG 150
                 + +I        R  RGL   VI TFPTF+YS V+ LKIG+ +LECAVCLNEF 
Sbjct: 85  GGRFDLSILIS-------RRQRGLGREVIETFPTFVYSTVKSLKIGRATLECAVCLNEFE 137

Query: 151 DEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSR 210
           ++ETLR IP CSHVFH DCIDAWL+ H+TCPVCRANL  +P +  S+  P+ NPD     
Sbjct: 138 EDETLRFIPNCSHVFHSDCIDAWLANHSTCPVCRANLTSKPDDRCSA--PIQNPDPEQPV 195

Query: 211 LEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRSHSTGHSVV 270
           L   +             R E     +L+    PPR  S G    S WFPRSHSTGHS+V
Sbjct: 196 LTSST-------------RPETVGADLLSQNRTPPRPWSTGLSIAS-WFPRSHSTGHSLV 241

Query: 271 QPGQDCERFTLRLPAEVRSQLMNSSLSRSKSC---VAFPSVRSSRRGFRSGSGGFVLG 325
           QPG++CERFTLRLP EVR++LM   LSR+KSC   V F    S RRG+R+ S G  L 
Sbjct: 242 QPGENCERFTLRLPEEVRNELM---LSRTKSCGVSVTFTRENSGRRGYRARSLGSSLS 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518453|ref|XP_003527893.1| PREDICTED: RING-H2 finger protein ATL11-like [Glycine max]

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 160/306 (52%), Positives = 195/306 (63%), Gaps = 49/306 (16%)

Query: 38  VTAQTP----PPPP----DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERG 89
           +TAQ P    PP P    D F+    KF+ +MAIV VILV+VFF+LGF SVY RQC ER 
Sbjct: 29  LTAQLPDTLTPPSPQQQEDRFARL--KFDKSMAIVLVILVAVFFVLGFLSVYTRQCAERR 86

Query: 90  -RNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNE 148
            R   D   +I       SRR  RGLD  +I TFPTF+YS V+ LK+G+ +LECAVCLNE
Sbjct: 87  MRGRFDISISI-------SRR-QRGLDREIIETFPTFVYSTVKSLKLGRATLECAVCLNE 138

Query: 149 FGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPD--- 205
           F + ETLR IP CSHVFH +CIDAWL+ H+TCPVCRANL P+P +   SF P+  PD   
Sbjct: 139 FEEVETLRFIPNCSHVFHSECIDAWLANHSTCPVCRANLFPKPDD--PSFDPIQIPDPEQ 196

Query: 206 ---VGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGWFPRS 262
                 +R E G  N +             +P++I  +QN   RSRS G+ R +GWFPRS
Sbjct: 197 PVISSPTRAETGGSNPR-------------SPNLI--DQNPTSRSRSTGF-RIAGWFPRS 240

Query: 263 HSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSC---VAFPSVRSSRRGFRSGS 319
           HSTGHS+VQPG++CERFTL LP EVR+QLM   LSR+KSC   V F    S RRG+R+ S
Sbjct: 241 HSTGHSLVQPGENCERFTLHLPEEVRNQLM---LSRTKSCGVGVTFTRENSERRGYRARS 297

Query: 320 GGFVLG 325
            G  L 
Sbjct: 298 VGSSLS 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28558782|gb|AAO45753.1| RING/c3HC4/PHD zinc finger-like protein [Cucumis melo subsp. melo]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/289 (48%), Positives = 180/289 (62%), Gaps = 10/289 (3%)

Query: 38  VTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA 97
           V+AQ  P P         + +G+MA++ VIL++  F + FFSVYIR C +    SP    
Sbjct: 24  VSAQFQPAPDPRSDPYQYRLSGSMAVIIVILIAALFFMAFFSVYIRHCND----SPSNTV 79

Query: 98  TIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRL 157
             I     RSRR  RGLD +VI TFPT +YS V+E KIGK +LECAVCLNEF D+ETLRL
Sbjct: 80  RPITAAAGRSRRATRGLDPAVIETFPTLIYSDVKEHKIGKSALECAVCLNEFEDDETLRL 139

Query: 158 IPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGET---PSSFIPVLNPDVGSSRLE-Q 213
           IPKC HVFH +CIDAWL++H+TCPVCRANL PQP ++         V+N D     +E Q
Sbjct: 140 IPKCDHVFHPECIDAWLASHSTCPVCRANLSPQPTDSVHRADDSNAVVNSDTDGGDIEAQ 199

Query: 214 GSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWR--RPSGWFPRSHSTGHSVVQ 271
            +D + E ++    +   E+     T+     R+R+ G R  R    FPRSHSTGHS+VQ
Sbjct: 200 SNDVVSETTAPPTVQIQTESELSTTTSNKALNRTRTRGSRSNRLRWLFPRSHSTGHSLVQ 259

Query: 272 PGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSGSG 320
           PG+D ERFTLRLP E+R Q++N  L R+ S V      SS RG+R GSG
Sbjct: 260 PGEDTERFTLRLPVEIRKQVVNRKLHRATSMVVLARQSSSMRGYRFGSG 308

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442843|ref|XP_004139190.1| PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Cucumis sativus] gi|449518671|ref|XP_004166360.1| PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Cucumis sativus]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/289 (48%), Positives = 180/289 (62%), Gaps = 10/289 (3%)

Query: 38  VTAQTPPPPPDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA 97
           V+AQ+ P P         + +G+MA++ VIL++  F + FFSVYIR C +   N+     
Sbjct: 24  VSAQSQPSPDPRSDPYQYRLSGSMAVIIVILIAALFFMAFFSVYIRHCNDSQSNTIRPIT 83

Query: 98  TIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRL 157
              G    RSRR  RGLD +VI TFPT +YS V+E KIGK +LECAVCLNEF D+ETLRL
Sbjct: 84  VAAG----RSRRATRGLDPAVIETFPTLIYSDVKEHKIGKSALECAVCLNEFEDDETLRL 139

Query: 158 IPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFI---PVLNPDVGSSRLE-Q 213
           IPKC HVFH +CIDAWL++H+TCPVCRANL PQ  E+         V+N D     +E Q
Sbjct: 140 IPKCDHVFHPECIDAWLASHSTCPVCRANLSPQLTESVHRVDDSNAVVNSDTDGGDIEAQ 199

Query: 214 GSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWR--RPSGWFPRSHSTGHSVVQ 271
            +D + E ++    +   E+     T      R+R+ G R  R    FPRSHSTGHS+VQ
Sbjct: 200 STDVVLETTAPPTVQIQTESELTTTTGNKALNRTRTRGSRSNRLRWLFPRSHSTGHSLVQ 259

Query: 272 PGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFPSVRSSRRGFRSGSG 320
           PG+D ERFTLRLP E+R Q++N  L+R+ S V      SS RG+R GSG
Sbjct: 260 PGEDTERFTLRLPVEIRKQVVNRKLNRAMSMVVLARQSSSMRGYRFGSG 308

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2207026	404	AT1G72200 [Arabidopsis thalian	0.850	0.702	0.464	2.5e-58
TAIR|locus:2096309	398	ATL6 "Arabidopsis toxicos en l	0.808	0.678	0.435	1.3e-52
TAIR|locus:2146330	368	CNI1 "carbon/nitrogen insensit	0.619	0.562	0.415	2e-51
TAIR|locus:2009527	381	ATL15 "Arabidopsis toxicos en	0.715	0.627	0.482	8.3e-51
TAIR|locus:2044757	378	ATL9 "Arabidopsis toxicos en l	0.802	0.708	0.427	5.8e-50
TAIR|locus:2206722	327	AT1G35330 [Arabidopsis thalian	0.712	0.727	0.463	1.8e-48
TAIR|locus:2044742	302	AT2G34990 [Arabidopsis thalian	0.416	0.460	0.486	1.4e-44
TAIR|locus:2122378	357	AT4G09130 [Arabidopsis thalian	0.784	0.733	0.411	1.7e-43
TAIR|locus:2140069	323	AT4G40070 [Arabidopsis thalian	0.374	0.386	0.511	9.5e-42
TAIR|locus:2122363	345	AT4G09120 [Arabidopsis thalian	0.631	0.611	0.395	1.7e-34

TAIR|locus:2207026 AT1G72200 [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 142/306 (46%), Positives = 183/306 (59%)

Query:     7 NPSRSIFNPMICDHGVVNFLFLFLYL---HA-LPYVTAQTXXXXXDAFSVTGPKFNGTMA 62
             N +RSI      DHG +  L LFL L   H    +V  Q      D  S    +F+ TMA
Sbjct:     8 NLNRSIIGGH--DHGSILQLLLFLLLLSSHGGFKFVAGQATHGGSDV-SGDSSRFDPTMA 64

Query:    63 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTF 122
             I+ ++LVSVFF LGFFSVYIR+C ER            G     +R+ ARGLD S+I TF
Sbjct:    65 ILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETF 124

Query:   123 PTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPV 182
             PTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH  CIDAWL +H TCP+
Sbjct:   125 PTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPL 184

Query:   183 CRANLVPQPGETPSSF-IP-VLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTN 240
             CRA+L+P PGE+  S  IP ++N   GS   +   D I+ + S D +  +  A   +  N
Sbjct:   185 CRADLIPVPGESIVSIQIPGLVNDPPGS---DPNGDRIRSLGSPDARLIESVA---LTCN 238

Query:   241 QNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSK 300
             Q+ P RS S GW   +G F  S  TG    Q  ++ +RFTLRLP ++ ++L+N +LS  K
Sbjct:   239 QSMPRRSMSTGWNL-AGMFTNSDRTG----QHSENLDRFTLRLPQDIHNKLVNPNLS--K 291

Query:   301 SCVAFP 306
               VA P
Sbjct:   292 VHVALP 297

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2096309 ATL6 "Arabidopsis toxicos en levadura 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 126/289 (43%), Positives = 168/289 (58%)

Query:    21 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSV 80
             GV+  +FL L L +     +Q+     +     G + +  MA++ VIL++  F +GFFS+
Sbjct:    11 GVLPIVFL-LILSSADLAASQSQPGPTNQPYNYG-RLSPAMAVIVVILIAALFFMGFFSI 68

Query:    81 YIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKG 138
             Y R C+      PDA  +  GG   R+     ARGLD SV+ TFPTFLYS V+  K+GKG
Sbjct:    69 YFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKG 124

Query:   139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF 198
              LECA+CLNEF D+ETLRL+PKC HVFH  CIDAWL AH TCPVCRANL  Q  E  S  
Sbjct:   125 ELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGESVE 184

Query:   199 IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIGWRRPSGW 258
                  PD+    L+Q   N + + +  V       P+ ++T++    R   +        
Sbjct:   185 PGGTEPDL---ELQQVVVNPEPVVTAPV-------PEQLVTSEVDSRRLPGVPVDLKRVK 234

Query:   259 FPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNS-SLSRSKSCVAFP 306
             F RSH+TGHSVVQPG+  ERFTLRLP +VR ++M    L+R+ S +  P
Sbjct:   235 FSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLP 283

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2146330 CNI1 "carbon/nitrogen insensitive 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 91/219 (41%), Positives = 122/219 (55%)

Query:    26 LFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQC 85
             L LFL L ++      T     D ++ +G   +  MA+V V++++  F +GFF+VYIR C
Sbjct:    12 LVLFLLL-SVSAGQPGTPDQRHDPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHC 69

Query:    86 TERGRNSPDAFATIIGGINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECA 143
             T     + D   T  GG  +R      ARGLD   I TFPTF+YS V+  KIGKG+LECA
Sbjct:    70 T----GAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECA 125

Query:   144 VCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLN 203
             +CLNEF D+ETLRL+PKC HVFH  CI AWL  H TCPVCR NL  Q   TP   + V+ 
Sbjct:   126 ICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQ---TPEPEV-VVE 181

Query:   204 PDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQN 242
              D+ + +       + E+      R       V+L  ++
Sbjct:   182 TDLEAQQQSAVPVPVVELPRVKFPRSHTTGHSVVLPGES 220

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0043562 "cellular response to nitrogen levels" evidence=IMP

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2009527 ATL15 "Arabidopsis toxicos en levadura 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 123/255 (48%), Positives = 158/255 (61%)

Query:    57 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDD 116
             F+ T AI+ ++LVSVFF LG  SVY+R+C +      D+       +N R      GLD 
Sbjct:    35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGM-DSGGGPGNWLNVRQTTEP-GLDA 92

Query:   117 SVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA 176
             SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH  CIDAWL +
Sbjct:    93 SVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRS 152

Query:   177 HNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQG-SDNIQEISSTDVQRRDEEAPD 235
               TCP+CRANLVP PGE+ SS IP L  + G + L     DN + + ++     DE   D
Sbjct:   153 QTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDDNRKRVLTSP----DERLID 208

Query:   236 -VILT-NQNRPPRSRSIGWRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMN 293
              V  T NQ+ P +S S GW+    + P S S G    QP ++ +R+TLRLP E+  QL+N
Sbjct:   209 SVAWTGNQSMPRKSMSTGWKLAELYSPAS-SPG----QPEENLDRYTLRLPQEIHDQLVN 263

Query:   294 SSLSR--SKSCVAFP 306
             SSL +  SK  +A P
Sbjct:   264 SSLGKQGSKGQLALP 278

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0033591 "response to L-ascorbic acid" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2044757 ATL9 "Arabidopsis toxicos en levadura 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 121/283 (42%), Positives = 165/283 (58%)

Query:    20 HGVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFS 79
             H ++ FL L L L ++PY   QT        + T P  +  + ++TV+ + +FF++ F S
Sbjct:    14 HNLL-FLLLLLLLQSVPYGFGQTQTTPPGT-TKTKPN-DPVVVVITVLFLVIFFMV-FGS 69

Query:    80 VYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGLDDSVINTFPTFLYSAVRELKIG 136
             ++ R+   +   S    +T     +Q  R RR  ARGLD   I TFPTFLYS V+ ++IG
Sbjct:    70 IFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIG 129

Query:   137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETP 195
             KG +ECAVCL EF D+ETLRL+P C HVFH DC+D WLS H+TCP+CRA+LV  Q G+  
Sbjct:   130 KGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDD 189

Query:   196 SSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRPPRSRSIG---W 252
              S       D G+       +    + S+D    D     V  +N N  PRS+S G   W
Sbjct:   190 DSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDA----VTWSNSNITPRSKSTGLSSW 245

Query:   253 RRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSS 295
             +     FPRSHSTGHS++QP  + +RFTLRLP +VR QLM +S
Sbjct:   246 QITGILFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQLMKTS 288

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2206722 AT1G35330 [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 115/248 (46%), Positives = 150/248 (60%)

Query:    63 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQRS--RRGARGLDDSV 118
             +  VI+  + F L F  +    C +    SP   +  T  GG  + +  RR +RGL   V
Sbjct:    45 VPAVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDV 104

Query:   119 INTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN 178
             IN+FP+FLYS V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH  CID WLS+ +
Sbjct:   105 INSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRS 164

Query:   179 TCPVCRANLVPQPGETPSSFIPVLNP-DVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVI 237
             TCPVCRA+L P+PG   +S  P + P D     LE  +     + S DV+  D  +    
Sbjct:   165 TCPVCRASLPPKPGSDQNSLYPFIRPHDNQDMDLENVTARRSVLESPDVRLLDRLSWSNN 224

Query:   238 LTNQNRPPRSRSIG---WRRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMN- 293
              T  N PPRSRS G   WR     FPRSHSTGHS+V   ++ +RFTL+LP EVR QL + 
Sbjct:   225 -TGANTPPRSRSTGLSNWRITELLFPRSHSTGHSLVPRVENLDRFTLQLPEEVRRQLSHM 283

Query:   294 SSLSRSKS 301
              +L +++S
Sbjct:   284 KTLPQARS 291

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2044742 AT2G34990 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 72/148 (48%), Positives = 98/148 (66%)

Query:    60 TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGG-INQR-SRRGARGLDDS 117
             T+ ++T+IL ++F I+G  SV  R  T R   S ++        +  R S    RGLD++
Sbjct:    14 TLLVITIILFAIF-IVGLASVCFRW-TSRQFYSQESINPFTDSDVESRTSITAVRGLDEA 71

Query:   118 VINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH 177
             +IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+  WLS H
Sbjct:    72 IINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDH 131

Query:   178 NTCPVCRANLVPQPGETPSSFIPVLNPD 205
             +TCP+CR +L  QPGE   S+   LNP+
Sbjct:   132 STCPLCRVDLCLQPGER--SY---LNPE 154

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2122378 AT4G09130 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 121/294 (41%), Positives = 163/294 (55%)

Query:    20 HGVVNFLFLFLYL-HALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFF 78
             H ++  + L L+L   LPYVT Q      ++    G     +  I+ ++L+S+F +L   
Sbjct:    10 HRILACVLLPLFLFQCLPYVTCQQGS---ESAGRNGKSKESS--IIGIVLLSLFLLL--L 62

Query:    79 SVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKG 138
              VY   C   G    +      GG      R  RG+D  VI +FP FLYS V+  KIG G
Sbjct:    63 VVY---CLNYGCCIEE---NETGGHEVLHSRVRRGIDKDVIESFPAFLYSEVKAFKIGNG 116

Query:   139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF 198
              +ECA+CL EF DEE LR +P CSH FH +CID WLS+ +TCPVCRANL  + G+   SF
Sbjct:   117 GVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGD---SF 173

Query:   199 IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNR--PPRSRSIG----W 252
              P  + DV +   ++G   +QE  S D   R      V   N      PRSRS G    W
Sbjct:   174 -PHPSMDVETGNAQRG---VQE--SPD--ERSLTGSSVTCNNNANYTTPRSRSTGLLSSW 225

Query:   253 RRPSGWFPRSHSTGHSVVQPGQDCERFTLRLPAEVRSQLMNSSLSRSKSCVAFP 306
               P  + PRSHSTGHS+VQP Q+ +RFTL+LP EV+ QL++ +L + +S +A P
Sbjct:   226 HVPELFLPRSHSTGHSLVQPCQNIDRFTLQLPEEVQRQLVSLNLIK-RSHIALP 278

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2140069 AT4G40070 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 69/135 (51%), Positives = 92/135 (68%)

Query:    64 VTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGG-INQ-RSRRGARGLDDSVINT 121
             V  +LV++FF+ G  SVYIR C    R++PD+         N   SRRG  GLD++V+ +
Sbjct:    49 VFAVLVTLFFLTGLLSVYIRHCA---RSNPDSSTRYFRNRANDGSSRRG--GLDNAVVES 103

Query:   122 FPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCP 181
             FP F YS+V+E KIG   LECA+CLNE  D ET+RL+P C+H+FH+DCID WL +H TCP
Sbjct:   104 FPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCP 163

Query:   182 VCRANLVPQ---PGE 193
             VCR+NL  +   PG+
Sbjct:   164 VCRSNLTAKSNKPGD 178

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2122363 AT4G09120 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 93/235 (39%), Positives = 133/235 (56%)

Query:    21 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSV 80
             GV+  LFLF   H LPYVT Q      ++   T    +   +I+ ++++++F  LG  S 
Sbjct:    15 GVILPLFLF---HLLPYVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSC 68

Query:    81 YIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSL 140
              +  C    R    A    +  ++ R+RRG   L+  VI +FPTFLYS V+ LKIGKG +
Sbjct:    69 CLH-CIFY-REEIGAAGQDV--LHSRARRG---LEKEVIESFPTFLYSEVKGLKIGKGGV 121

Query:   141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIP 200
             ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCPVCRANL  +PGE+     P
Sbjct:   122 ECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YP 177

Query:   201 VLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQNRP----PRSRSIG 251
              LN DV +  +++   N + ++   V  R       +L++        PRS S G
Sbjct:   178 YLNMDVETGGVQK-LPNERSLTGNSVTTRSRSTG--LLSSWRMAEIFVPRSHSTG 229

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	3e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	8e-13
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-11
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	3e-11
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	6e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-08
smart00184	40	smart00184, RING, Ring finger	2e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	5e-07
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	4e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	7e-06
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	1e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	6e-04
pfam12906	47	pfam12906, RINGv, RING-variant domain	0.001
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	0.003

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 71.3 bits (175), Expect = 3e-16
 Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185
           EC +CL+EF   E + ++P C HVFH +C+D WL + NTCP+CRA
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 61.7 bits (150), Expect = 8e-13
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANL 187
           EC +CL EF +     ++  C HVF   CID WL S  NTCP+CR  +
Sbjct: 1   ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 11/53 (20%)

Query: 142 CAVCLNEF----------GDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 184
           CA+C N F          GD+  +    +C H FH+ CI  WL   NTCP+CR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVW-GECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 9/71 (12%)

Query: 120 NTFPTFL--YSAVRELKIGKGSLECAVCLNEFGDEET----LRLIPKCSHVFHMDCIDAW 173
            T P+ L  Y  +      K   ECA+C+ +  D+E       ++  C+HVF ++CID W
Sbjct: 156 KTIPSVLSEYEKLYNRSKDK---ECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIW 212

Query: 174 LSAHNTCPVCR 184
               NTCPVCR
Sbjct: 213 KKEKNTCPVCR 223

Length = 238

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 56.5 bits (136), Expect = 6e-09
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 3/63 (4%)

Query: 128 SAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRAN 186
           S  R ++  KG +ECA+C++ F   + LR++P C H FH+ C+D WL  + N CPVCR  
Sbjct: 313 SIERAVEADKG-VECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTA 370

Query: 187 LVP 189
           + P
Sbjct: 371 IPP 373

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185
            LEC +CL+   D   L     C HVF  +CI  +L   + CP+CR 
Sbjct: 2   ELECPICLDLLRDPVVL---TPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVC 183
           C +CL E+   +   ++P C H F   CI  WL + N TCP+C
Sbjct: 1   CPICLEEY--LKDPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 106 RSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEF---GDEETLR---LIP 159
           R RR  + L+          +Y    E ++      C +C++E      E   R   + P
Sbjct: 263 RFRRATKDLNA---------MYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTP 313

Query: 160 K---CSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSSFI 199
           K   C H+ H+ C+  WL    TCP+CR  ++  Q   TP+S  
Sbjct: 314 KRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQSSPTPASPN 357

Length = 491

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 14/65 (21%)

Query: 142 CAVCLNEF-------------GDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188
           CA+C N               GDE  + +   C+H FH  CI  WL     CP+ R   V
Sbjct: 23  CAICRNHIMGTCPECQFGMTPGDECPV-VWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81

Query: 189 PQPGE 193
              G 
Sbjct: 82  LADGG 86

Length = 88

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVC 183
           C +CL E   ++ + ++P C H+F   CI +WL S + TCP+C
Sbjct: 1   CPICLEEP--KDPVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 150 GDEETLRLIPKCSHVFHMDCIDAWLSAHNT---CPVCR 184
           GD+  L +  KC H FHM CI  WL+   +   CP+CR
Sbjct: 42  GDDCPL-VWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 102  GINQRSRRGARGLDDSVINTFPTFLYSAVRELKIG-----KGSLECAVCLNEFGD-EETL 155
            G ++   +    L  + +          +   K        G  ECA+C +     + +L
Sbjct: 1427 GTSEIGWKSWINLRQNEMIKKNGSFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSL 1486

Query: 156  --RLIPKCSHVFHMDCIDAWL--SAHNTCPVCRANL 187
              +    C + FH  C+  W   SA + CP+CR+ +
Sbjct: 1487 PSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|221845 pfam12906, RINGv, RING-variant domain

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 142 CAVCLNEFGDEETLRLIPKCS---HVFHMDCIDAWL--SAHNTCPVC 183
           C +CL    ++E L    +C       H  C++ WL  S + TC +C
Sbjct: 1   CRICLEGEEEDEPLIRPCRCRGSLKYVHQSCLERWLKTSGNTTCEIC 47

Length = 47

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 119 INTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN 178
                 +  + +  LK     L C +C        ++     C H F   CI   L    
Sbjct: 5   ATDPSDWNQTKIPSLKGLDSMLRCRICDCRI----SIPCETTCGHTFCSLCIRRHLGTQP 60

Query: 179 TCPVCRANLVPQPGETPSSFI 199
            CPVCR +  P       S  
Sbjct: 61  FCPVCRED--PCESRLRGSSG 79

Length = 391

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.74
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.44
PHA02929	238	N1R/p28-like protein; Provisional	99.31
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.23
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.22
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.11
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.89
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.86
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.85
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.84
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.83
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.83
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.83
PHA02926	242	zinc finger-like protein; Provisional	98.77
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.76
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.64
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.63
PF14634	44	zf-RING_5: zinc-RING finger domain	98.62
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.62
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.55
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.55
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.54
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.44
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.37
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.31
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.26
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.25
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.25
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.2
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.03
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.01
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.0
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.95
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.95
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.93
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.9
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.82
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.78
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.78
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.76
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.75
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.74
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.67
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.63
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.54
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.5
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.47
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.47
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.44
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.31
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.3
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.03
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.94
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.92
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.91
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.72
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.62
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.39
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.2
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.14
KOG2660	331	consensus Locus-specific chromosome binding protei	96.0
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.99
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.92
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.71
COG5152	259	Uncharacterized conserved protein, contains RING a	95.69
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.6
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.4
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.37
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.31
PHA03096	284	p28-like protein; Provisional	95.3
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.21
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.11
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.94
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.79
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	94.73
PHA02862	156	5L protein; Provisional	94.71
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.68
PF04641	260	Rtf2: Rtf2 RING-finger	94.45
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.13
KOG4739	233	consensus Uncharacterized protein involved in syna	94.11
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	93.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.17
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	93.11
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.72
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	91.88
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.67
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.44
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	90.93
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.57
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	90.45
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	90.16
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	89.86
KOG0298	1394	consensus DEAD box-containing helicase-like transc	89.4
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	89.13
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	89.13
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.69
KOG1940	276	consensus Zn-finger protein [General function pred	88.29
COG5236	493	Uncharacterized conserved protein, contains RING Z	87.93
PF03869	50	Arc: Arc-like DNA binding domain; InterPro: IPR005	87.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	86.93
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	86.7
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	85.98
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	85.89
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	85.71
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	85.06
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	84.75
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	83.55
KOG3002	299	consensus Zn finger protein [General function pred	83.02
KOG3899	381	consensus Uncharacterized conserved protein [Funct	82.47
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	82.25
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	82.1
KOG3053	293	consensus Uncharacterized conserved protein [Funct	81.91

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=6.3e-18  Score=163.35  Aligned_cols=80  Identities=30%  Similarity=0.804  Sum_probs=67.4

Q ss_pred             cCCCCCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-Cccccccccc
Q 039186          110 GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLV  188 (334)
Q Consensus       110 ~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~  188 (334)
                      ....+.+..+.++|...|....+...   .+.|+||||+|..++.+|+|| |+|.||..||++||..+. .||+|++++.
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~---~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~  278 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDA---TDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR  278 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCC---CceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence            34578899999999999988765432   269999999999999999999 999999999999997775 5999999886


Q ss_pred             CCCCC
Q 039186          189 PQPGE  193 (334)
Q Consensus       189 ~~~~~  193 (334)
                      ...+.
T Consensus       279 ~~~~~  283 (348)
T KOG4628|consen  279 TDSGS  283 (348)
T ss_pred             CCCCC
Confidence            54443

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.44  E-value=3.4e-14  Score=98.40  Aligned_cols=44  Identities=55%  Similarity=1.274  Sum_probs=40.0

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR  184 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR  184 (334)
                      ++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            37999999999888888998 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.31  E-value=2e-12  Score=120.17  Aligned_cols=77  Identities=31%  Similarity=0.729  Sum_probs=59.9

Q ss_pred             CCCCCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCcc----eEEcCCCCCccchhHHHHHHhcCCCccccccc
Q 039186          111 ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEET----LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN  186 (334)
Q Consensus       111 ~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~  186 (334)
                      ..+..+..++++|.+......... ...+.+|+||++.+.+++.    +.+++.|+|.||..||.+|+..+.+||+||..
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~~-~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~  225 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLYN-RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP  225 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhhc-CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCE
Confidence            456789999999998765433222 2346799999999876541    23455699999999999999999999999998


Q ss_pred             cc
Q 039186          187 LV  188 (334)
Q Consensus       187 l~  188 (334)
                      +.
T Consensus       226 ~~  227 (238)
T PHA02929        226 FI  227 (238)
T ss_pred             ee
Confidence            75

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.23  E-value=2.4e-12  Score=98.95  Aligned_cols=48  Identities=40%  Similarity=0.991  Sum_probs=36.9

Q ss_pred             CCCCCcCccccccccCC----------cceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186          136 GKGSLECAVCLNEFGDE----------ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR  184 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR  184 (334)
                      ...++.|+||++.|.+.          -.+.+.+ |+|.||..||.+||+.+.+||+||
T Consensus        16 ~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   16 DIADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             SSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCcCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            33456799999999332          2344444 999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=6.5e-12  Score=118.39  Aligned_cols=52  Identities=44%  Similarity=1.155  Sum_probs=46.9

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVP  189 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~  189 (334)
                      ..+.+|+|||+.|-..+.++.+| |.|.||..|+++|+. -+..||+||.++++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            34589999999999999999999 999999999999997 55679999999875

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.2e-10  Score=110.69  Aligned_cols=51  Identities=33%  Similarity=1.031  Sum_probs=42.6

Q ss_pred             CCCCCcCcccccc-ccCC---------cceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186          136 GKGSLECAVCLNE-FGDE---------ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL  187 (334)
Q Consensus       136 ~~~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l  187 (334)
                      ..++..|+||+++ |..+         .+...+| |||+||..|+..|++++++||+||.++
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCcc
Confidence            5567899999999 4433         2335667 999999999999999999999999995

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=8.5e-10  Score=103.79  Aligned_cols=51  Identities=31%  Similarity=0.908  Sum_probs=43.5

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP  191 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~  191 (334)
                      .....|.+||+...++..   +| |||+||+.||..|...+..||+||..+.+.+
T Consensus       237 ~a~~kC~LCLe~~~~pSa---Tp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSA---TP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCceEEEecCCCCCCc---Cc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            456789999999877654   45 9999999999999999999999999987543

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.86  E-value=1.3e-09  Score=98.07  Aligned_cols=49  Identities=33%  Similarity=0.922  Sum_probs=39.6

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc----------------CCCcccccccccC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA----------------HNTCPVCRANLVP  189 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~----------------~~tCP~CR~~l~~  189 (334)
                      .+..+|+||++.+.++   .+++ |||.||..||..|+..                ...||+||.++..
T Consensus        16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            3568999999998765   3355 9999999999999842                2479999999864

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.85  E-value=2.1e-09  Score=72.62  Aligned_cols=44  Identities=55%  Similarity=1.326  Sum_probs=36.2

Q ss_pred             cCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccc
Q 039186          141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANL  187 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l  187 (334)
                      +|+||++.+  .+.+.+.+ |+|.||..|+..|+.. +..||+|+..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  33454554 9999999999999987 67899998764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.84  E-value=2.4e-09  Score=76.05  Aligned_cols=46  Identities=33%  Similarity=0.920  Sum_probs=38.2

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +..|.||++...+   +.++| |||. ||..|+..|+.....||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4689999998543   56677 9999 999999999999999999999875

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.83  E-value=2.4e-09  Score=72.24  Aligned_cols=39  Identities=41%  Similarity=1.149  Sum_probs=32.3

Q ss_pred             CccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186          142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC  183 (334)
Q Consensus       142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C  183 (334)
                      |+||++.+.+  .+..++ |||.||.+||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999866  345665 99999999999999988899998

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.4e-09  Score=95.92  Aligned_cols=52  Identities=33%  Similarity=0.859  Sum_probs=43.5

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ++...|+|||+.+.+...+  ..+|||+||..||..-++....||+|++.|..+
T Consensus       129 ~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            4557899999999776543  237999999999999999999999999877644

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.5e-09  Score=99.44  Aligned_cols=52  Identities=31%  Similarity=0.812  Sum_probs=41.1

Q ss_pred             cCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC---CCcccccccccCC
Q 039186          135 IGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH---NTCPVCRANLVPQ  190 (334)
Q Consensus       135 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~  190 (334)
                      ...+.++|.|||+.-+++.   ++ .|||.||+.||.+||..+   +.||+|+..+...
T Consensus        43 ~~~~~FdCNICLd~akdPV---vT-lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDPV---VT-LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCCCceeeeeeccccCCCE---Ee-ecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            3457889999999976653   33 399999999999999643   4699999988643

>PHA02926 zinc finger-like protein; Provisional

Probab=98.77  E-value=5.2e-09  Score=95.49  Aligned_cols=52  Identities=27%  Similarity=0.844  Sum_probs=40.0

Q ss_pred             CCCCcCccccccccCC-----cceEEcCCCCCccchhHHHHHHhcC------CCccccccccc
Q 039186          137 KGSLECAVCLNEFGDE-----ETLRLIPKCSHVFHMDCIDAWLSAH------NTCPVCRANLV  188 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCP~CR~~l~  188 (334)
                      ..+.+|+|||+..-++     ....+++.|+|.||..||..|...+      .+||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            3467999999986332     1234666799999999999999653      35999999875

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.76  E-value=5.6e-09  Score=82.11  Aligned_cols=51  Identities=37%  Similarity=0.814  Sum_probs=38.7

Q ss_pred             CCCcCccccccccC--------Ccc-eEEcCCCCCccchhHHHHHHhc---CCCccccccccc
Q 039186          138 GSLECAVCLNEFGD--------EET-LRLIPKCSHVFHMDCIDAWLSA---HNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~--------~~~-~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~  188 (334)
                      .++.|.||...|+.        ++. ..+...|+|.||..||.+||.+   +..||+||+++.
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            36789999999852        111 1233469999999999999975   457999999875

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.64  E-value=7.3e-09  Score=79.88  Aligned_cols=52  Identities=31%  Similarity=0.626  Sum_probs=38.9

Q ss_pred             CCcCcccccccc-----------CCc-ceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          139 SLECAVCLNEFG-----------DEE-TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       139 ~~~C~ICl~~~~-----------~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      -+.|+||...|.           .++ .......|+|.||..||.+||..+..||+||+.+...
T Consensus        20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            356777777662           222 2223335999999999999999999999999987644

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.63  E-value=2.2e-08  Score=67.88  Aligned_cols=39  Identities=44%  Similarity=1.191  Sum_probs=33.2

Q ss_pred             CccccccccCCcceEEcCCCCCccchhHHHHHHh--cCCCcccc
Q 039186          142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS--AHNTCPVC  183 (334)
Q Consensus       142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~--~~~tCP~C  183 (334)
                      |+||++.+.++.  .+++ |+|.||..||.+|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999987665  4566 999999999999998  45579998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.62  E-value=2.8e-08  Score=68.81  Aligned_cols=44  Identities=30%  Similarity=0.916  Sum_probs=37.7

Q ss_pred             cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186          141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA  185 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~  185 (334)
                      .|.||++.|.+....++++ |||+||..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996666677776 9999999999999866678999984

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.62  E-value=1.8e-08  Score=69.33  Aligned_cols=38  Identities=34%  Similarity=0.924  Sum_probs=29.2

Q ss_pred             CccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCcccc
Q 039186          142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVC  183 (334)
Q Consensus       142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~C  183 (334)
                      |+||++.|.++..+    .|||.|+..||..|++..    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l----~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSL----PCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-----SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCcccc----CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999888665    599999999999999644    369988

>smart00504 Ubox Modified RING finger domain

Probab=98.55  E-value=5.1e-08  Score=71.77  Aligned_cols=45  Identities=27%  Similarity=0.596  Sum_probs=39.5

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +.|+||.+.+.++   .+++ |||+|+..||..|+..+.+||+|+.++.
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            5799999999886   3455 9999999999999988889999998874

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.3e-08  Score=103.58  Aligned_cols=51  Identities=33%  Similarity=0.916  Sum_probs=43.3

Q ss_pred             CCCCcCccccccccCCcc--eEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          137 KGSLECAVCLNEFGDEET--LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ..+..|+||++++..+..  ...+| |+|+||..|+..|++..++||+||..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            346789999999987543  55666 9999999999999999999999999554

>smart00184 RING Ring finger

Probab=98.54  E-value=6.3e-08  Score=63.04  Aligned_cols=38  Identities=45%  Similarity=1.254  Sum_probs=31.6

Q ss_pred             CccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccc
Q 039186          142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVC  183 (334)
Q Consensus       142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~C  183 (334)
                      |+||++..   .....++ |+|.||..|++.|+. .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999983   3455666 999999999999998 66679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=3.7e-08  Score=79.55  Aligned_cols=68  Identities=31%  Similarity=0.552  Sum_probs=48.1

Q ss_pred             CCccchhhhHhhhcCCCCCcCccccccc-------------cCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          122 FPTFLYSAVRELKIGKGSLECAVCLNEF-------------GDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       122 lp~~~~~~~~~~~~~~~~~~C~ICl~~~-------------~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      |...+++.+.-...+-.-+.|+||..-+             ..++.+..-..|+|.||..||.+||+.+..||+|.++..
T Consensus        29 F~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~  108 (114)
T KOG2930|consen   29 FELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV  108 (114)
T ss_pred             eEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence            4444555555444444567899988765             123333344469999999999999999999999988765


Q ss_pred             C
Q 039186          189 P  189 (334)
Q Consensus       189 ~  189 (334)
                      .
T Consensus       109 ~  109 (114)
T KOG2930|consen  109 F  109 (114)
T ss_pred             E
Confidence            4

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.37  E-value=2e-07  Score=92.68  Aligned_cols=48  Identities=40%  Similarity=0.742  Sum_probs=41.5

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ....|+||++.|..+.   +++ |+|.||..||..|+.....||+|+..+..
T Consensus        25 ~~l~C~IC~d~~~~Pv---itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        25 TSLRCHICKDFFDVPV---LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccCCCcCchhhhCcc---CCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            4679999999997764   455 99999999999999888889999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=5.9e-07  Score=89.90  Aligned_cols=51  Identities=33%  Similarity=0.938  Sum_probs=39.2

Q ss_pred             CCCcCccccccccCCc--------------ceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186          138 GSLECAVCLNEFGDEE--------------TLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~  189 (334)
                      ...+|+|||.++.--.              ....+| |.|+||..|+.+|....+ .||+||.++++
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3568999999974211              122446 999999999999998555 89999999863

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.1e-07  Score=86.95  Aligned_cols=54  Identities=30%  Similarity=0.663  Sum_probs=43.2

Q ss_pred             CCCCcCccccccccCCc-------ceEEcCCCCCccchhHHHHHH--hcCCCcccccccccCCC
Q 039186          137 KGSLECAVCLNEFGDEE-------TLRLIPKCSHVFHMDCIDAWL--SAHNTCPVCRANLVPQP  191 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~CI~~Wl--~~~~tCP~CR~~l~~~~  191 (334)
                      .++..|+||-..+....       .+..+. |+|+||..||..|-  ..+++||.|+..++.+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r  284 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR  284 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence            35678999999886554       455664 99999999999996  56779999998886543

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=7.6e-08  Score=73.72  Aligned_cols=54  Identities=28%  Similarity=0.689  Sum_probs=38.6

Q ss_pred             cCCCCCcCccccccccC--------Cc-ceEEcCCCCCccchhHHHHHHhc---CCCccccccccc
Q 039186          135 IGKGSLECAVCLNEFGD--------EE-TLRLIPKCSHVFHMDCIDAWLSA---HNTCPVCRANLV  188 (334)
Q Consensus       135 ~~~~~~~C~ICl~~~~~--------~~-~~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l~  188 (334)
                      ....+..|.||.-.|..        ++ ...++..|.|.||..||.+|+..   +..||+||+.+.
T Consensus        16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            33455689999999842        22 11133359999999999999964   346999999864

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=4.4e-07  Score=84.77  Aligned_cols=50  Identities=32%  Similarity=0.865  Sum_probs=40.4

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHH-HHhcCCC-cccccccccCCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDA-WLSAHNT-CPVCRANLVPQP  191 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~-Wl~~~~t-CP~CR~~l~~~~  191 (334)
                      .+..|+||++....+   ..+| |||+||..||.. |-..+.- ||+||+...+++
T Consensus       214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            467899999996554   3455 999999999999 8766665 999999887653

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.1e-06  Score=88.62  Aligned_cols=48  Identities=25%  Similarity=0.712  Sum_probs=37.9

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-----CCcccccccccCC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-----NTCPVCRANLVPQ  190 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~tCP~CR~~l~~~  190 (334)
                      +..|+|||+...-+.   .+ .|||+||..||.++|...     ..||+||..+..+
T Consensus       186 ~~~CPICL~~~~~p~---~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPV---RT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCccc---cc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            678999999864432   23 599999999999998543     3699999988753

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.03  E-value=3.8e-06  Score=59.72  Aligned_cols=42  Identities=31%  Similarity=0.934  Sum_probs=31.9

Q ss_pred             cCccccccccCCcceEEcCCCC-----CccchhHHHHHHhc--CCCccccc
Q 039186          141 ECAVCLNEFGDEETLRLIPKCS-----HVFHMDCIDAWLSA--HNTCPVCR  184 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR  184 (334)
                      .|-||++.. .++...+.| |.     |.+|..|+.+|+..  +.+||+|+
T Consensus         1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            389999943 344445777 86     88999999999954  44899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=2.2e-06  Score=78.73  Aligned_cols=44  Identities=36%  Similarity=0.908  Sum_probs=38.3

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR  184 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR  184 (334)
                      .+...|+||++.|.++   .++| |+|.||..||..++.....||.||
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence            3567999999999988   5666 999999999999998545799999

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.00  E-value=3.4e-06  Score=64.70  Aligned_cols=47  Identities=26%  Similarity=0.487  Sum_probs=36.2

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      .+.|+||.+.|.++..+   | |||.|...||..|+.. +.+||+|+.++..
T Consensus         4 ~f~CpIt~~lM~dPVi~---~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    4 EFLCPITGELMRDPVIL---P-SGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGB-TTTSSB-SSEEEE---T-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             ccCCcCcCcHhhCceeC---C-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            57899999999887544   4 9999999999999988 7899999988864

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.95  E-value=6e-06  Score=79.45  Aligned_cols=51  Identities=22%  Similarity=0.548  Sum_probs=37.2

Q ss_pred             CCcCccccccc-cCCc-ceEEcCCCCCccchhHHHHHH-hcCCCcccccccccCC
Q 039186          139 SLECAVCLNEF-GDEE-TLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVPQ  190 (334)
Q Consensus       139 ~~~C~ICl~~~-~~~~-~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~~  190 (334)
                      +..|+||...- ..+. .+.+. .|||.||..||+..+ .....||.|+.++...
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence            45799999963 3333 33344 499999999999966 4445799999888643

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.95  E-value=2.5e-06  Score=90.75  Aligned_cols=52  Identities=27%  Similarity=0.842  Sum_probs=38.3

Q ss_pred             CCCCcCccccccccC-Cc--ceEEcCCCCCccchhHHHHHHhc--CCCccccccccc
Q 039186          137 KGSLECAVCLNEFGD-EE--TLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRANLV  188 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~-~~--~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~  188 (334)
                      .+-.+||||+..+.. +.  .-...|.|.|.||..|+.+|+++  +.+||+||..++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            356799999998751 11  11123459999999999999965  447999998764

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.93  E-value=7.5e-06  Score=56.67  Aligned_cols=38  Identities=37%  Similarity=0.929  Sum_probs=22.0

Q ss_pred             CccccccccCCc-ceEEcCCCCCccchhHHHHHHhcC----CCcc
Q 039186          142 CAVCLNEFGDEE-TLRLIPKCSHVFHMDCIDAWLSAH----NTCP  181 (334)
Q Consensus       142 C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP  181 (334)
                      |+||.+ |..++ .-.+|+ |||+|+.+||.+|+...    -.||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 86544 456787 99999999999999743    2576

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.90  E-value=2.9e-06  Score=64.70  Aligned_cols=50  Identities=30%  Similarity=0.794  Sum_probs=23.7

Q ss_pred             CCcCcccccccc-CCcc-eEEc--CCCCCccchhHHHHHHhc----C-------CCccccccccc
Q 039186          139 SLECAVCLNEFG-DEET-LRLI--PKCSHVFHMDCIDAWLSA----H-------NTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~-~~~~-~~~l--p~C~H~FH~~CI~~Wl~~----~-------~tCP~CR~~l~  188 (334)
                      +.+|.||++.+. .+.. ..+-  +.|+..||..|+..||..    +       .+||.|+++|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999999876 3322 1222  369999999999999952    1       15999999875

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.82  E-value=1.1e-05  Score=79.34  Aligned_cols=47  Identities=28%  Similarity=0.892  Sum_probs=39.4

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--CCCcccccccccCC
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRANLVPQ  190 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~l~~~  190 (334)
                      ..|.||-+.   ++.+++-| |||..|..|+..|-.+  .++||.||..+...
T Consensus       370 eLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            459999987   66788888 9999999999999843  56899999998643

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=1.3e-05  Score=77.81  Aligned_cols=49  Identities=29%  Similarity=0.784  Sum_probs=40.9

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      +...+|.|||++   ...+.++| |-|. .|..|-+..--.++.||+||+++.+
T Consensus       288 ~~gkeCVIClse---~rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSE---SRDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecC---CcceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            446799999999   44466888 9997 9999999876677889999999864

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.78  E-value=8.4e-06  Score=81.10  Aligned_cols=48  Identities=35%  Similarity=0.846  Sum_probs=38.4

Q ss_pred             CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +.-.|+|||+.+.+... ++... |.|.||..|+..|..  .+||+||....
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~~--~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWWD--SSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeee-cccccchHHHhhccc--CcChhhhhhcC
Confidence            34579999999977653 34444 999999999999965  48999998765

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.76  E-value=1.1e-05  Score=76.34  Aligned_cols=46  Identities=30%  Similarity=0.635  Sum_probs=39.5

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      -+.|-||-+-|..+-   .+ .|||.||.-||...|..+..||+||.+..
T Consensus        25 ~lrC~IC~~~i~ip~---~T-tCgHtFCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          25 MLRCRICDCRISIPC---ET-TCGHTFCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             HHHhhhhhheeecce---ec-ccccchhHHHHHHHhcCCCCCccccccHH
Confidence            457999999986653   33 49999999999999999999999998764

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.75  E-value=9.2e-06  Score=78.32  Aligned_cols=47  Identities=34%  Similarity=0.797  Sum_probs=40.8

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      -+.|-||.+-|..+.   ++| |+|.||.-||..+|..+..||.|+.++.+
T Consensus        23 lLRC~IC~eyf~ip~---itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPM---ITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHhHHHHHhcCce---ecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence            467999999997653   456 99999999999999999999999988754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=1.2e-05  Score=78.79  Aligned_cols=48  Identities=31%  Similarity=0.968  Sum_probs=36.0

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhc---CCCcccccccc
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA---HNTCPVCRANL  187 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~---~~tCP~CR~~l  187 (334)
                      -.|.||.+-+.....+.-+-.|||+||..|+.+|+..   +.+||.|+-.+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            4799996655555555555459999999999999964   35799998433

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.67  E-value=8.8e-06  Score=85.37  Aligned_cols=50  Identities=26%  Similarity=0.557  Sum_probs=41.2

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ..|++|+..+.+.....-.+ |+|.||..||+.|-....+||+||..+...
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence            46888888887665544444 999999999999999999999999988654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=2.4e-05  Score=76.66  Aligned_cols=51  Identities=27%  Similarity=0.929  Sum_probs=40.5

Q ss_pred             CCCcCccccccccCCc----ceEEcCCCCCccchhHHHHHH--hc-----CCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEE----TLRLIPKCSHVFHMDCIDAWL--SA-----HNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~Wl--~~-----~~tCP~CR~~l~  188 (334)
                      .+.+|.||++...+..    ...++|+|.|.||..||..|-  ..     .+.||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            4678999999986543    245678899999999999997  33     357999998764

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=2.5e-05  Score=56.37  Aligned_cols=46  Identities=33%  Similarity=0.687  Sum_probs=34.3

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHH-hcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWL-SAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl-~~~~tCP~CR~~l~  188 (334)
                      .++|.||++.-.+..   +- .|||. .|.+|-.+-+ ..+..||+||+++.
T Consensus         7 ~dECTICye~pvdsV---lY-tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDSV---LY-TCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchHH---HH-HcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            479999999843332   22 49997 8999966554 47889999999874

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=1.3e-05  Score=77.76  Aligned_cols=51  Identities=33%  Similarity=0.697  Sum_probs=41.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccCCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVPQP  191 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~  191 (334)
                      .++.|+|||+-++..   +.++.|.|-||.+||..-+. .+++||.||+.+....
T Consensus        42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence            467899999998553   34457999999999999885 5668999999887543

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.47  E-value=4.2e-05  Score=72.82  Aligned_cols=50  Identities=28%  Similarity=0.835  Sum_probs=41.8

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----------------------cCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----------------------AHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----------------------~~~tCP~CR~~l~  188 (334)
                      ....|.|||.-|.+++....++ |.|.||..|+.++|.                       ....||+||..|.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            3467999999999999887887 999999999998874                       1225999999885

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.47  E-value=3.4e-05  Score=57.61  Aligned_cols=47  Identities=30%  Similarity=0.761  Sum_probs=24.7

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ...|++|.+.+..+..+   ..|.|+||..||..-+..  .||+|+.+-..+
T Consensus         7 lLrCs~C~~~l~~pv~l---~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q   53 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCL---GGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ   53 (65)
T ss_dssp             TTS-SSS-S--SS-B------SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred             hcCCcHHHHHhcCCcee---ccCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence            46899999999776433   369999999999886654  499998887543

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=7.4e-05  Score=71.20  Aligned_cols=51  Identities=27%  Similarity=0.459  Sum_probs=39.6

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccCCCCC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVPQPGE  193 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~~~~~  193 (334)
                      ..+|+||+....-+   ..++ |+|.||..||..-.. ...+|++||.+++..-..
T Consensus         7 ~~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~   58 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF   58 (324)
T ss_pred             CCcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence            45899999997655   3444 999999999998664 455799999999764433

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=7.2e-05  Score=78.83  Aligned_cols=49  Identities=35%  Similarity=0.805  Sum_probs=38.3

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      .+-..|++|-...++-   . +++|+|+||..||..-+.. ...||.|-+.+.+
T Consensus       641 K~~LkCs~Cn~R~Kd~---v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDA---V-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             HhceeCCCccCchhhH---H-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            4567899999765443   2 3379999999999999965 4579999888764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.00014  Score=71.75  Aligned_cols=48  Identities=27%  Similarity=0.859  Sum_probs=36.2

Q ss_pred             CCcCccccccccCC-cceEEcCCCCCccchhHHHHHHhc--CCCccccccc
Q 039186          139 SLECAVCLNEFGDE-ETLRLIPKCSHVFHMDCIDAWLSA--HNTCPVCRAN  186 (334)
Q Consensus       139 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~CR~~  186 (334)
                      ...|+||++.+.-. +.....+.|+|.|-.+||+.||..  ...||.|...
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            46899999998743 333344569999999999999952  2259999654

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.00054  Score=63.01  Aligned_cols=54  Identities=26%  Similarity=0.686  Sum_probs=45.0

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--------CCCcccccccccCCCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--------HNTCPVCRANLVPQPG  192 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~CR~~l~~~~~  192 (334)
                      +....|..|-..+..++.+|+  .|-|+||++|+.+|-..        ...||.|-.+++++..
T Consensus        48 DY~pNC~LC~t~La~gdt~RL--vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   48 DYNPNCRLCNTPLASGDTTRL--VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             CCCCCCceeCCccccCcceee--hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            456689999999999999988  49999999999999742        2369999999986543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00069  Score=67.78  Aligned_cols=50  Identities=34%  Similarity=0.843  Sum_probs=42.7

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ..+++|.||+..+.++...   | |||.||..||++-+.....||.||..+.+.
T Consensus        82 ~sef~c~vc~~~l~~pv~t---p-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVT---P-CGHSFCLECLDRSLDQETECPLCRDELVEL  131 (398)
T ss_pred             cchhhhhhhHhhcCCCccc---c-ccccccHHHHHHHhccCCCCcccccccccc
Confidence            4678999999998777544   5 999999999999888777899999999863

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.92  E-value=0.00043  Score=68.15  Aligned_cols=48  Identities=38%  Similarity=0.949  Sum_probs=39.7

Q ss_pred             CCcCcccccccc-CCcceEEcCCCCCccchhHHHHHHhcCC--Ccccccccc
Q 039186          139 SLECAVCLNEFG-DEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRANL  187 (334)
Q Consensus       139 ~~~C~ICl~~~~-~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~l  187 (334)
                      +..|..|-+.+. .++.+..+| |.|+||..|+..+|.++.  +||.||+-.
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crklr  415 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLR  415 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            578999999885 455778888 999999999999996654  799999544

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.91  E-value=0.00044  Score=69.22  Aligned_cols=49  Identities=35%  Similarity=0.781  Sum_probs=42.2

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      .+..|++|...+.++...  . .|||.||..|+..|+..+..||.|+..+..
T Consensus        20 ~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQ   68 (391)
T ss_pred             ccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccch
Confidence            467899999999887653  2 599999999999999999999999887754

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.72  E-value=0.001  Score=48.79  Aligned_cols=42  Identities=33%  Similarity=0.698  Sum_probs=27.4

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--CCCccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--HNTCPV  182 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--~~tCP~  182 (334)
                      -...|+|.+..|+++.  +-. .|+|+|-++.|.+|+..  ...||+
T Consensus        10 ~~~~CPiT~~~~~~PV--~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPV--KSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEE--EES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCc--CcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            3578999999998763  333 59999999999999943  336998

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.62  E-value=0.0027  Score=61.38  Aligned_cols=46  Identities=26%  Similarity=0.512  Sum_probs=37.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN  186 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~  186 (334)
                      ....|+||+.....+..+..   -|-+||..||-.++..++.||+=-.+
T Consensus       299 ~~~~CpvClk~r~Nptvl~v---SGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLEV---SGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             ccccChhHHhccCCCceEEe---cceEEeHHHHHHHHHhcCCCCccCCc
Confidence            34689999999877655422   59999999999999999999985433

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.39  E-value=0.0012  Score=56.28  Aligned_cols=39  Identities=18%  Similarity=0.645  Sum_probs=30.6

Q ss_pred             CCCCcCccccccccCCcceEEcCCCC------CccchhHHHHHHhc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCS------HVFHMDCIDAWLSA  176 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~CI~~Wl~~  176 (334)
                      ....+|+||++.+...+-+..++ |+      |.||.+|+.+|-..
T Consensus        24 ~~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   24 RCTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             ccCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhh
Confidence            34679999999998845555565 66      89999999999433

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0036  Score=61.12  Aligned_cols=48  Identities=23%  Similarity=0.555  Sum_probs=40.9

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      .++..|+||+..   +......| |+|.-|..||.+-+.+.+.|=.|++.+.
T Consensus       420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence            467789999976   55556677 9999999999999999999999988764

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.14  E-value=0.002  Score=65.65  Aligned_cols=49  Identities=35%  Similarity=0.756  Sum_probs=38.1

Q ss_pred             CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCccccccccc
Q 039186          136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRANLV  188 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~l~  188 (334)
                      +++..+|.+|-++-++....    .|.|.||.-||.++..     .+.+||+|...+.
T Consensus       533 nk~~~~C~lc~d~aed~i~s----~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDYIES----SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             ccCceeecccCChhhhhHhh----hhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            35678999999986554333    6999999999999874     3458999977664

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.00  E-value=0.0017  Score=62.86  Aligned_cols=49  Identities=27%  Similarity=0.635  Sum_probs=41.5

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ....|.+|-.-|-+..++  . .|-|.||+.||...|...++||.|...+-.
T Consensus        14 ~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             cceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence            456899999998776654  3 599999999999999999999999887753

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.99  E-value=0.0045  Score=69.16  Aligned_cols=52  Identities=25%  Similarity=0.666  Sum_probs=38.7

Q ss_pred             CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-----C-----Cccccccccc
Q 039186          136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-----N-----TCPVCRANLV  188 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-----~-----tCP~CR~~l~  188 (334)
                      .+.++.|.||..+--.......+. |+|+||..|...-|..+     -     +||+|+.++.
T Consensus      3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            346778999998865555555664 99999999998766432     1     6999998774

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.92  E-value=0.0041  Score=66.51  Aligned_cols=52  Identities=27%  Similarity=0.778  Sum_probs=41.6

Q ss_pred             CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-------Ccccccccc
Q 039186          136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-------TCPVCRANL  187 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-------tCP~CR~~l  187 (334)
                      ..+..+|.||++.+.....++-...|.|+||..||..|-.+..       .||.|....
T Consensus       188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            4567899999999988777766667999999999999974321       599998544

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.0085  Score=56.77  Aligned_cols=50  Identities=30%  Similarity=0.578  Sum_probs=37.4

Q ss_pred             CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCccccccccc
Q 039186          136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLV  188 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~  188 (334)
                      ...+.+|++|-+.-..+-.  +. +|+|+||.-||..=+...  -+||.|-.+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~--~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHV--IG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCee--ec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3467899999988544432  33 499999999999876533  58999977765

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.69  E-value=0.0044  Score=56.14  Aligned_cols=45  Identities=20%  Similarity=0.536  Sum_probs=38.5

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL  187 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l  187 (334)
                      .+.|.||-.+|+.+...    .|||.||..|...-+....+|-+|.+..
T Consensus       196 PF~C~iCKkdy~spvvt----~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYESPVVT----ECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccchhhh----hcchhHHHHHHHHHhccCCcceecchhh
Confidence            56899999999887654    6999999999998888888999997654

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.0027  Score=60.50  Aligned_cols=42  Identities=29%  Similarity=0.774  Sum_probs=33.2

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ...|+||++.   +..+..|+ |||. -|..|-...    ..||+||+.+.
T Consensus       300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence            4569999998   56677887 9994 888996653    37999998775

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.005  Score=54.10  Aligned_cols=30  Identities=27%  Similarity=0.781  Sum_probs=27.1

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccch
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHM  167 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~  167 (334)
                      +...||.|||++++.++++..+| |-.+||+
T Consensus       175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            34569999999999999999999 9999996

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.37  E-value=0.012  Score=58.54  Aligned_cols=38  Identities=26%  Similarity=0.873  Sum_probs=33.6

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS  175 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~  175 (334)
                      .....|.||+++.........+| |+|+||+.|+..++.
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFT  219 (445)
T ss_pred             hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHH
Confidence            45678999999988778888898 999999999999984

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.015  Score=54.37  Aligned_cols=53  Identities=15%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ....|+||.+.+.....+..|.+|||+|+.+|.++.+..-..||+|-.++.+.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            34679999999998888877877999999999999998889999998877643

>PHA03096 p28-like protein; Provisional

Probab=95.30  E-value=0.0078  Score=57.82  Aligned_cols=36  Identities=22%  Similarity=0.676  Sum_probs=29.0

Q ss_pred             CcCccccccccCCc----ceEEcCCCCCccchhHHHHHHh
Q 039186          140 LECAVCLNEFGDEE----TLRLIPKCSHVFHMDCIDAWLS  175 (334)
Q Consensus       140 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~Wl~  175 (334)
                      ..|.||++......    .--+++.|.|.||..||..|-.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~  218 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT  218 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence            57999999875432    3346778999999999999974

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.21  E-value=0.014  Score=55.93  Aligned_cols=46  Identities=28%  Similarity=0.734  Sum_probs=35.6

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHH-hcCCCccccc-cccc
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCR-ANLV  188 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR-~~l~  188 (334)
                      +.|+.|-.....+..   +|.|+|.||.+||..-| .+...||.|. .++.
T Consensus       275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl  322 (427)
T COG5222         275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL  322 (427)
T ss_pred             ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccch
Confidence            789999888766543   36799999999999877 5667899994 4443

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.11  E-value=0.0095  Score=47.89  Aligned_cols=32  Identities=38%  Similarity=0.935  Sum_probs=25.8

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHH
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCID  171 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~  171 (334)
                      ....|++|-..+..+ .....| |||+||..|+.
T Consensus        77 ~~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence            356799999999774 455666 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.015  Score=56.89  Aligned_cols=44  Identities=34%  Similarity=0.708  Sum_probs=31.9

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ..+.|.||+++..+   ...+| |||+-|  |+.-- +...+||+||..+.
T Consensus       304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            45689999999655   55666 999966  66553 22345999998775

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.79  E-value=0.012  Score=56.22  Aligned_cols=46  Identities=24%  Similarity=0.465  Sum_probs=39.1

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      .+.|-||...|..+...    +|+|.||..|-..=+.....|++|-+..-
T Consensus       241 Pf~c~icr~~f~~pVvt----~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVT----KCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccchhh----cCCceeehhhhccccccCCcceecccccc
Confidence            45699999999888655    79999999998888888889999977653

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=94.73  E-value=0.027  Score=39.57  Aligned_cols=40  Identities=30%  Similarity=1.009  Sum_probs=26.7

Q ss_pred             CccccccccCCcceEEcCCCC--C---ccchhHHHHHHh--cCCCcccc
Q 039186          142 CAVCLNEFGDEETLRLIPKCS--H---VFHMDCIDAWLS--AHNTCPVC  183 (334)
Q Consensus       142 C~ICl~~~~~~~~~~~lp~C~--H---~FH~~CI~~Wl~--~~~tCP~C  183 (334)
                      |-||++.-.++..+ +.| |.  -   ..|..|+.+|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            67999987766633 445 65  2   679999999996  44579987

>PHA02862 5L protein; Provisional

Probab=94.71  E-value=0.024  Score=49.01  Aligned_cols=45  Identities=20%  Similarity=0.628  Sum_probs=33.5

Q ss_pred             CcCccccccccCCcceEEcCCCC-----CccchhHHHHHHhc--CCCcccccccccC
Q 039186          140 LECAVCLNEFGDEETLRLIPKCS-----HVFHMDCIDAWLSA--HNTCPVCRANLVP  189 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~--~~tCP~CR~~l~~  189 (334)
                      ..|=||.++-+++  .  -| |.     -.-|.+|+.+|+..  +.+|++|+.++.-
T Consensus         3 diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            5799999985433  2  34 65     35899999999964  3479999998853

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.68  E-value=0.03  Score=39.69  Aligned_cols=45  Identities=22%  Similarity=0.578  Sum_probs=22.1

Q ss_pred             CccccccccCCc-ceEEcCCCCCccchhHHHHHHh-cCCCcccccccc
Q 039186          142 CAVCLNEFGDEE-TLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANL  187 (334)
Q Consensus       142 C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l  187 (334)
                      |++|.+++...+ .+.=- .|++..|..|...-+. ....||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999994433 33233 4889999999888775 466899999875

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.45  E-value=0.04  Score=52.19  Aligned_cols=53  Identities=23%  Similarity=0.557  Sum_probs=41.7

Q ss_pred             CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ..+.+.|+|+..+|........+.+|||+|...||..- .....||+|-.++..
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE  162 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence            34678999999999665555555559999999999996 335579999888763

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.13  E-value=0.046  Score=48.03  Aligned_cols=47  Identities=19%  Similarity=0.660  Sum_probs=34.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCC-----ccchhHHHHHHhcC--CCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSH-----VFHMDCIDAWLSAH--NTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H-----~FH~~CI~~Wl~~~--~tCP~CR~~l~~  189 (334)
                      .+..|=||.++-.+  .  ..| |..     .-|.+|+.+|+...  ..|++|++++.-
T Consensus         7 ~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          7 MDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            45689999988532  2  234 554     45999999999643  469999988754

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.11  E-value=0.018  Score=53.56  Aligned_cols=45  Identities=27%  Similarity=0.695  Sum_probs=33.3

Q ss_pred             cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      .|-.|.---. ++...++. |.|+||..|...-.  ...||+|+.++-.
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRI   49 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceeee
Confidence            5777765444 77787775 99999999977632  2289999998743

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=93.64  E-value=0.087  Score=52.20  Aligned_cols=28  Identities=29%  Similarity=1.083  Sum_probs=21.9

Q ss_pred             CCCccchhHHHHHHhcC-------------CCccccccccc
Q 039186          161 CSHVFHMDCIDAWLSAH-------------NTCPVCRANLV  188 (334)
Q Consensus       161 C~H~FH~~CI~~Wl~~~-------------~tCP~CR~~l~  188 (334)
                      |.-.+|.+|+.+|+.++             .+||+||+.+.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            44568999999998633             37999999864

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.17  E-value=0.043  Score=59.02  Aligned_cols=42  Identities=24%  Similarity=0.686  Sum_probs=32.9

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL  187 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l  187 (334)
                      ..|..|-..++-|....   .|+|.||..|+.   .....||-|+.++
T Consensus       841 skCs~C~~~LdlP~VhF---~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFVHF---LCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCccccceeee---ecccHHHHHhhc---cCcccCCccchhh
Confidence            48999999987765432   399999999998   4556799998743

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=93.11  E-value=0.054  Score=37.38  Aligned_cols=41  Identities=22%  Similarity=0.655  Sum_probs=23.6

Q ss_pred             CccccccccCCcceEEcCCCCCccchhHHHHHHhcCC--Ccccc
Q 039186          142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVC  183 (334)
Q Consensus       142 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~C  183 (334)
                      |.+|.+....+....- +.|+=.+|..|+..++..+.  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~-~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSN-RDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCC-CccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            6778887776654421 24888999999999997666  79988

; PDB: 3NW0_A 2CT0_A.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.72  E-value=0.0085  Score=59.20  Aligned_cols=49  Identities=22%  Similarity=0.662  Sum_probs=41.7

Q ss_pred             CcCccccccccCC-cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          140 LECAVCLNEFGDE-ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       140 ~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ..|+||...++.. +.+..+- |||.+|.+||.+||.....||.|+..+..
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            4699999998766 5555554 99999999999999998899999998864

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.88  E-value=0.11  Score=49.68  Aligned_cols=48  Identities=29%  Similarity=0.767  Sum_probs=37.8

Q ss_pred             CCcCccccccccCCc---ceEEcCCCCCccchhHHHHHHhcC-CCcccccccc
Q 039186          139 SLECAVCLNEFGDEE---TLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANL  187 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l  187 (334)
                      -.+|-||-++|...+   ..+.+ +|||.||..|+..-+... ..||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            358999999998653   34455 599999999999877544 3699999985

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.67  E-value=0.079  Score=56.67  Aligned_cols=47  Identities=23%  Similarity=0.689  Sum_probs=36.5

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCcccccccccCCC
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLVPQP  191 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~~  191 (334)
                      ..|.||++    .+...+.+ |+|.||.+|+..-+...  ..||+||..+....
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999    34455665 99999999999887533  25999999886543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=0.076  Score=51.28  Aligned_cols=42  Identities=31%  Similarity=0.794  Sum_probs=28.4

Q ss_pred             cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186          141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL  187 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l  187 (334)
                      .|--|--.+  ..--|++| |.|+||.+|-..  ..-+.||.|-..+
T Consensus        92 fCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            465554433  22346788 999999999654  4456899996554

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.93  E-value=0.11  Score=46.50  Aligned_cols=31  Identities=29%  Similarity=0.906  Sum_probs=24.7

Q ss_pred             CCCCccchhHHHHHHhc----CC-------CcccccccccCC
Q 039186          160 KCSHVFHMDCIDAWLSA----HN-------TCPVCRANLVPQ  190 (334)
Q Consensus       160 ~C~H~FH~~CI~~Wl~~----~~-------tCP~CR~~l~~~  190 (334)
                      .||--||.-|+..||..    ++       .||.|-.++..+
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            59999999999999952    22       599998887643

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.57  E-value=0.18  Score=49.25  Aligned_cols=51  Identities=18%  Similarity=0.451  Sum_probs=34.9

Q ss_pred             CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHH-hcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~  189 (334)
                      +++-|+.|++++...+. ..-.| ||-..|.-|....- .-+..||-||..+..
T Consensus        13 eed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             ccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            45669999999976554 33334 89877777744432 234579999998764

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=90.45  E-value=0.36  Score=35.02  Aligned_cols=40  Identities=28%  Similarity=0.732  Sum_probs=32.8

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPV  182 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~  182 (334)
                      ...|.+|-+.|.+++.+.+-|.|+-.+|.+|.+.    ...|-.
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~   44 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN   44 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence            4579999999998888889999999999999544    345644

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=90.16  E-value=0.29  Score=43.08  Aligned_cols=36  Identities=22%  Similarity=0.598  Sum_probs=21.8

Q ss_pred             CCcCccccccccCCcce---------EEcCCCCCc-cchhHHHHHHh
Q 039186          139 SLECAVCLNEFGDEETL---------RLIPKCSHV-FHMDCIDAWLS  175 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~---------~~lp~C~H~-FH~~CI~~Wl~  175 (334)
                      +..|+|||+---....+         |--. |+-. -|..|++++-+
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence            45899999874332221         1111 5543 58999999853

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.86  E-value=0.18  Score=46.30  Aligned_cols=39  Identities=33%  Similarity=0.820  Sum_probs=30.4

Q ss_pred             CccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186          142 CAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       142 C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      |-.|-+.   +..+.++| |.|. +|..|=..    -.+||+|+....
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence            8888776   67788888 9995 99999553    356999987654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=89.40  E-value=0.11  Score=58.37  Aligned_cols=47  Identities=28%  Similarity=0.786  Sum_probs=37.9

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL  187 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l  187 (334)
                      +...|.||++.+.....+.   .|+|.+|..|+..|+..+..||.|....
T Consensus      1152 ~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             cccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence            3457999999987433322   5999999999999999999999998544

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.13  E-value=0.18  Score=54.62  Aligned_cols=35  Identities=26%  Similarity=0.580  Sum_probs=27.6

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL  174 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl  174 (334)
                      .+.+|.+|.-.+.... -.+.| |||.||.+||.+-.
T Consensus       816 p~d~C~~C~~~ll~~p-F~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIKP-FYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcCc-ceeee-ccchHHHHHHHHHH
Confidence            5678999999886553 34556 99999999998764

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=89.13  E-value=0.23  Score=36.11  Aligned_cols=44  Identities=23%  Similarity=0.536  Sum_probs=30.3

Q ss_pred             CcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ..|-.|...   +.+-.++| |+|+.+..|.+.+  .-+-||.|-+++..
T Consensus         8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~   51 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF   51 (55)
T ss_pred             eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence            346666555   33344566 9999999997664  33469999888753

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.69  E-value=0.12  Score=54.11  Aligned_cols=44  Identities=25%  Similarity=0.593  Sum_probs=31.8

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA  185 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~  185 (334)
                      -..|.||+..|....-+-..+.|||..|..|+..-.  +.+|| |..
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~   54 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR   54 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence            357999999986554333333699999999998854  45788 544

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=88.29  E-value=0.27  Score=47.06  Aligned_cols=47  Identities=23%  Similarity=0.661  Sum_probs=37.4

Q ss_pred             CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186          138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA  185 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~  185 (334)
                      ....|+||.+.+-.... +..+ +|||.-|..|+......+.+||+|.+
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~-~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVL-KCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCcc-CcccchHHHHHHHHhccCCCCCcccc
Confidence            34569999998765543 3345 49999999999999877799999977

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.93  E-value=0.38  Score=47.27  Aligned_cols=65  Identities=20%  Similarity=0.478  Sum_probs=42.9

Q ss_pred             HHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHH--HhcCCCccccccccc
Q 039186          118 VINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW--LSAHNTCPVCRANLV  188 (334)
Q Consensus       118 ~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W--l~~~~tCP~CR~~l~  188 (334)
                      .+..-|...-+...  ..+++...|.||-..+.-   ...+| |+|..|--|-.+.  |...+.||+||....
T Consensus        42 nlsaEPnlttsSad--dtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          42 NLSAEPNLTTSSAD--DTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccCCcccccccc--ccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            33444554433322  234456689999987532   34566 9999999997654  567789999998764

>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site

Probab=87.24  E-value=0.33  Score=34.56  Aligned_cols=20  Identities=35%  Similarity=0.682  Sum_probs=16.9

Q ss_pred             CccccccccCcHHHHHHHHh
Q 039186          274 QDCERFTLRLPAEVRSQLMN  293 (334)
Q Consensus       274 ~~~er~tlrlpe~v~~~~~~  293 (334)
                      .+.++|+||||++++.+|-.
T Consensus         2 r~~~~f~lRlP~~l~~~lk~   21 (50)
T PF03869_consen    2 RKDPQFNLRLPEELKEKLKE   21 (50)
T ss_dssp             CCSEEEEEECEHHHHHHHHH
T ss_pred             CCCCceeeECCHHHHHHHHH
Confidence            35789999999999988763

Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.93  E-value=0.33  Score=51.95  Aligned_cols=23  Identities=35%  Similarity=0.993  Sum_probs=21.2

Q ss_pred             CCCCccchhHHHHHHhcCCCccc
Q 039186          160 KCSHVFHMDCIDAWLSAHNTCPV  182 (334)
Q Consensus       160 ~C~H~FH~~CI~~Wl~~~~tCP~  182 (334)
                      .|+|+-|..|...|+.....||.
T Consensus      1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             cccccccHHHHHHHHhcCCcCCC
Confidence            49999999999999999889985

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.70  E-value=0.38  Score=33.97  Aligned_cols=43  Identities=30%  Similarity=0.802  Sum_probs=25.1

Q ss_pred             cCccccccccCCcceEEcCCCC-CccchhHHHHHHhcCCCcccccccccC
Q 039186          141 ECAVCLNEFGDEETLRLIPKCS-HVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      .|.-|.-+  +..-+    +|+ |..|..|+...|.....||+|..+++.
T Consensus         4 nCKsCWf~--~k~Li----~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen    4 NCKSCWFA--NKGLI----KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             ---SS-S----SSEE----E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             cChhhhhc--CCCee----eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            46666654  23233    365 999999999999999999999998863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=85.98  E-value=0.58  Score=40.08  Aligned_cols=51  Identities=22%  Similarity=0.497  Sum_probs=34.8

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHh---cCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS---AHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~  189 (334)
                      -.+|-||.+.-.+..-+.=-.-||-..|.-|-...|+   .+..||+|++++..
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            4689999998543321111112999999998777664   46689999998853

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.89  E-value=0.68  Score=44.45  Aligned_cols=48  Identities=25%  Similarity=0.560  Sum_probs=34.6

Q ss_pred             cCccccccc-cCCcceEEcCCCCCccchhHHHHHHhcC-CCccccccccc
Q 039186          141 ECAVCLNEF-GDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLV  188 (334)
Q Consensus       141 ~C~ICl~~~-~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~  188 (334)
                      .|++|-... ..++...+...|+|-.|..|++..+... ..||.|-..+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR   51 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR   51 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence            599998763 3444333333499999999999988554 47999977664

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=85.71  E-value=0.34  Score=45.36  Aligned_cols=50  Identities=26%  Similarity=0.591  Sum_probs=38.4

Q ss_pred             CCcCccccccc--cCCcceEEcCCCCCccchhHHHHHHhcCC-Ccc--ccccccc
Q 039186          139 SLECAVCLNEF--GDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCP--VCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~--~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP--~CR~~l~  188 (334)
                      +..|+||..+.  .++..+.+-|.|-|-.|..|+++.+.... .||  -|-.-|.
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            45799999874  33445666678999999999999996655 699  7866554

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.06  E-value=0.35  Score=48.46  Aligned_cols=37  Identities=27%  Similarity=0.698  Sum_probs=27.7

Q ss_pred             CCcCccccccccCC-cceEEcCCCCCccchhHHHHHHhc
Q 039186          139 SLECAVCLNEFGDE-ETLRLIPKCSHVFHMDCIDAWLSA  176 (334)
Q Consensus       139 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~Wl~~  176 (334)
                      ..+|.||+.+.... .... ...|+|.||.+|+.+.+..
T Consensus       146 ~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  146 KEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             cccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence            56899999555444 4444 4469999999999998863

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=84.75  E-value=2.1  Score=28.82  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039186           60 TMAIVTVILVSVFFILGFFSVYIRQCT   86 (334)
Q Consensus        60 ~~~iil~ilv~~l~ll~~~~i~~r~c~   86 (334)
                      .++|+.++++.+.++++.+.+|..+++
T Consensus         5 ~IaIIv~V~vg~~iiii~~~~YaCcyk   31 (38)
T PF02439_consen    5 TIAIIVAVVVGMAIIIICMFYYACCYK   31 (38)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            455666666655555555555554333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=83.55  E-value=1.1  Score=48.60  Aligned_cols=54  Identities=22%  Similarity=0.548  Sum_probs=38.7

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCC---ccchhHHHHHHhcCC--CcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSH---VFHMDCIDAWLSAHN--TCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H---~FH~~CI~~Wl~~~~--tCP~CR~~l~~~  190 (334)
                      +++..|-||..+=..++.+..--+|.-   ..|.+|+.+|+....  .|-+|+.++.-+
T Consensus        10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk   68 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK   68 (1175)
T ss_pred             ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence            345689999999777776643223432   389999999997444  599999887543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=83.02  E-value=0.89  Score=44.13  Aligned_cols=45  Identities=27%  Similarity=0.569  Sum_probs=33.6

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +-++|+||.+.+..+.-  +.+ =||.-|..|-.+   ....||.||.++.
T Consensus        47 ~lleCPvC~~~l~~Pi~--QC~-nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIF--QCD-NGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             hhccCchhhccCcccce--ecC-CCcEehhhhhhh---hcccCCccccccc
Confidence            35789999999987742  211 369999999653   4567999999886

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.47  E-value=0.63  Score=44.77  Aligned_cols=28  Identities=25%  Similarity=0.786  Sum_probs=22.6

Q ss_pred             CCCccchhHHHHHHh-------------cCCCccccccccc
Q 039186          161 CSHVFHMDCIDAWLS-------------AHNTCPVCRANLV  188 (334)
Q Consensus       161 C~H~FH~~CI~~Wl~-------------~~~tCP~CR~~l~  188 (334)
                      |.-.+|.+|+.+|+.             .+.+||+||+.+.
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            567899999999984             3347999999875

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=82.25  E-value=0.38  Score=51.19  Aligned_cols=47  Identities=28%  Similarity=0.827  Sum_probs=37.0

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC---CCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH---NTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~  189 (334)
                      ..+|+||+..+..+..+    +|.|.|+..|+..-+...   ..||+|+..+..
T Consensus        21 ~lEc~ic~~~~~~p~~~----kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK   70 (684)
T KOG4362|consen   21 ILECPICLEHVKEPSLL----KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK   70 (684)
T ss_pred             hccCCceeEEeeccchh----hhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence            57999999999887333    799999999988766443   369999977653

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.10  E-value=0.87  Score=47.60  Aligned_cols=47  Identities=32%  Similarity=0.876  Sum_probs=38.9

Q ss_pred             CCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      .+....|.||+.++    ..+..+ |.   |..|+..|+..+..||+|+..+...
T Consensus       476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~  522 (543)
T KOG0802|consen  476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKED  522 (543)
T ss_pred             hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhcc
Confidence            34567899999998    555665 88   8999999999999999999888654

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.91  E-value=0.59  Score=44.18  Aligned_cols=50  Identities=22%  Similarity=0.668  Sum_probs=35.5

Q ss_pred             CCCcCccccccccCCcce-EEcCCCC-----CccchhHHHHHHhcC--------CCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETL-RLIPKCS-----HVFHMDCIDAWLSAH--------NTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~-~~lp~C~-----H~FH~~CI~~Wl~~~--------~tCP~CR~~l~  188 (334)
                      .+..|-||+..=+++..- .+-| |.     |=-|..|+..|...+        .+||-|++...
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi   82 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI   82 (293)
T ss_pred             cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence            456899999886554432 3344 64     668999999998421        26999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		4e-13
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		3e-09
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		6e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		4e-07
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-05
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		1e-04
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		5e-04
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		9e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188
           +ECAVCL E  D E  R +P+C H FH +C+D WL +H+TCP+CR  +V
Sbjct: 6   VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG 192
           C VC+ +F   + LR++P C+H FH  C+D WL A+ TCP+CRA+  P  G
Sbjct: 26  CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSSG 75

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 128 SAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
           S+  E  +G G LEC VC  ++   E++R +P C+H+FH  CI  WL  H++CPVCR +L
Sbjct: 5   SSGTEEHVGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
Query: 188 VPQ 190
             Q
Sbjct: 63  TGQ 65

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ-PGET 194
           +C +CL+   + E +R +P C H+FH  C+D WL  +  CP+CR ++  Q P E+
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC 183
           CAVCL +F   + L + P C H FH  C+  WL     CP+C
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 189
           C +C +E+   +    +P C H FH  C+  WL    TCPVCR    P
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188
           EC +C++   D     LI  C+H F   CID W   H  CP+CR  + 
Sbjct: 17  ECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190
           C  C  E   E+ + +  +C+H FH  C+  W+  +N CP+C+ + V Q
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	5e-32
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-30
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	9e-30
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	4e-25
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-24
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	3e-23
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	1e-20
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-18
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	4e-18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-15
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-15
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-14
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-13
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-13
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-12
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	6e-12
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-10
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-10
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	6e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-10
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-09
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	7e-09
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	8e-09
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	5e-08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	8e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-07
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	5e-07
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	7e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	3e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	4e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  113 bits (285), Expect = 5e-32
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 117 SVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA 176
                 P++ ++             C VC+ +F   + LR++P C+H FH  C+D WL A
Sbjct: 4   GSSGQLPSYRFNPNNH---QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKA 59

Query: 177 HNTCPVCRANLVPQPG 192
           + TCP+CRA+  P  G
Sbjct: 60  NRTCPICRADSGPSSG 75

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  110 bits (276), Expect = 2e-30
 Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 104 NQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSH 163
           +              I+  P  L +   +       + C +C +E+   +    +P C H
Sbjct: 7   HHSHMVANPPASKESIDALPEILVTE--DHGAVGQEMCCPICCSEYVKGDVATELP-CHH 63

Query: 164 VFHMDCIDAWLSAHNTCPVCRANLVP 189
            FH  C+  WL    TCPVCR    P
Sbjct: 64  YFHKPCVSIWLQKSGTCPVCRCMFPP 89

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  107 bits (269), Expect = 9e-30
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query: 136 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188
               +ECAVCL E  D E  R +P+C H FH +C+D WL +H+TCP+CR  +V
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 95.1 bits (237), Expect = 4e-25
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 191
           +C +CL+   + E +R +P C H+FH  C+D WL  +  CP+CR ++  Q 
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 196
              LEC VC  ++   E++R +P C+H+FH  CI  WL  H++CPVCR +L  Q   T  
Sbjct: 13  GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71

Query: 197 S 197
            
Sbjct: 72  P 72

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 90.2 bits (224), Expect = 3e-23
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSS 197
            CAVCL +F   + L + P C H FH  C+  WL     CP+C   ++     +  S
Sbjct: 17  LCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGPS 72

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 83.8 bits (207), Expect = 1e-20
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190
           C  C  E   E+ + +  +C+H FH  C+  W+  +N CP+C+ + V Q
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 77.3 bits (191), Expect = 1e-18
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185
            C +CL +      +  +  C H+ H  C +  L     CP+C  
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 76.7 bits (189), Expect = 4e-18
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 127 YSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 186
             +   +K      EC +C+    D     ++P C+H F   CID W   H  CP+CR  
Sbjct: 3   SGSSGRVKQLTDEEECCICM----DGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQ 57

Query: 187 LVPQPGETPSS 197
           +      +  S
Sbjct: 58  MTGANESSGPS 68

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185
            C +CL +  +         C H F   CI  W+  + TCP+C+ 
Sbjct: 7   RCPICLEDPSNYSMA---LPCLHAFCYVCITRWIRQNPTCPLCKV 48

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 68.8 bits (168), Expect = 3e-15
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 138 GSLECAVCLNEFGDEETLRLIP---KCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190
           G++ C +C++ + +      +    +C HVF   C+   L   NTCP CR  +  +
Sbjct: 14  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 138 GSLECAVCLNEFGDEETLRLIP---KCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGET 194
             + C +C++ + +      +    +C HVF   C+   L   NTCP CR  +       
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI------N 55

Query: 195 PSSFIPV 201
              + P+
Sbjct: 56  HKRYHPI 62

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 138 GSLECAVCLNEFGDEETLRLIP---KCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGET 194
           G++ C +C++ + +      +    +C HVF   C+   L   NTCP CR  +       
Sbjct: 9   GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI------N 62

Query: 195 PSSFIPV 201
              + P+
Sbjct: 63  HKRYHPI 69

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 64.9 bits (158), Expect = 1e-13
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 17/95 (17%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQPGETPSS 197
              C +C+ +  D    RL P CS +    CI  WL+     CP CRA L          
Sbjct: 22  VFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL------QLRE 72

Query: 198 FIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEE 232
            +            E+ +  +  +    + + +E 
Sbjct: 73  LVN-------CRWAEEVTQQLDTLQLCSLTKHEEN 100

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 14/49 (28%), Positives = 16/49 (32%)

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190
           C         EE       C+H FH  CI  WL     CP+       Q
Sbjct: 54  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 13/43 (30%), Positives = 15/43 (34%)

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 184
           C         EE       C+H FH  CI  WL     CP+  
Sbjct: 65  CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSS 197
           + C++C     D  T   I +C H F   CI       N CP C   +   QP   PSS
Sbjct: 16  ILCSICKGYLIDATT---ITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGPSS 71

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
           L C +C   F D  T   I +C H F   CI  +L     CP+C   +
Sbjct: 16  LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPICDVQV 60

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 56.7 bits (136), Expect = 3e-10
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 136 GKGSLECAVCLNEFGDEETLRLIP---KCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 191
           G G++ C +C++ + +      +    +C HVF   C+   L   NTCP CR  +  + 
Sbjct: 4   GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 50.2 bits (119), Expect = 6e-08
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 140 LECAVCLNEFGD---EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
           + C +C++ + +      L +  +C HVF   C+   L   NTCP CR  +
Sbjct: 73  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 9/59 (15%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA-----NLVPQPGE 193
            ECA+CL       +L     C HVF   C+         C +CR       L   P  
Sbjct: 16  PECAICLQTCVHPVSL----PCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPSS 70

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 191
           L+C +C   F +  TL     C+H F   CI+ W+     CP+CR ++  + 
Sbjct: 65  LQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 4/47 (8%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 186
             C +C   F +        KC H F   C      A   C +C   
Sbjct: 16  FRCFICRQAFQNPVVT----KCRHYFCESCALEHFRATPRCYICDQP 58

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 52.2 bits (124), Expect = 7e-09
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 19/74 (25%)

Query: 141 ECAVCLNEFGD--------------EETLRLIPKCSHVFHMDCIDAWLSAHN-----TCP 181
           +C +C+ +                    +  + KCSH FH+ C+ A     N      CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 182 VCRANLVPQPGETP 195
            C+     + G  P
Sbjct: 87  SCKTIYGEKTGTQP 100

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
            L C +C   F       +IP+CSH +   CI  +LS    CP C   +
Sbjct: 22  LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 8/58 (13%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRANLVPQPGETPS 196
            C +C +     ++      C    H+ C+  +  ++    CP C       P E P 
Sbjct: 17  ICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW---PHEIPK 68

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL--SAHNTCPVCRANLVPQP 191
           L C +C +   D     +IP C + +  +CI   L  S  +TCP C  N V   
Sbjct: 16  LLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 52.5 bits (125), Expect = 8e-08
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 119 INTFPTFLYSAVRE-LKIGKGSLECAVCLNEFGDEETLRLI----PKCSHVFHMDCIDAW 173
           +  FP   +S   +  +     L C +C     D   + L+     KC    H  C++ W
Sbjct: 287 LCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEW 346

Query: 174 LSA-----------HNTCPVCRANL 187
                            CP C+A L
Sbjct: 347 FKTLMDGKTFLEVSFGQCPFCKAKL 371

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCID-AWLSAHNTCPVCRANLVPQP 191
            +C  C        T      C H    DC+D ++ +   +CP CR +L    
Sbjct: 53  FQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSY 101

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 131 RELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVP 189
              ++G     C +C     D      I  C H+    C+ +W  S    CP CR  +  
Sbjct: 324 LYCEMGSTFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379

Query: 190 Q 190
            
Sbjct: 380 T 380

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 135 IGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRANLVPQPG 192
                  C +C +     ++      C    H+ C+  +  ++    CP C       P 
Sbjct: 176 YPDAVKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW---PH 229

Query: 193 ETPSSFIP 200
           E P  F P
Sbjct: 230 EIPKVFDP 237

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVCR 184
           LEC +C+  F +E+    +  C H     C++  L++      CP C 
Sbjct: 16  LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL--SAHNTCPVCRANLVPQP 191
           L C +C +   D     +IP C + +  +CI   L  S  +TCP C  N V   
Sbjct: 14  LLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 64

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQ 190
            +C  C       +      +C H F   C+ A LS+ +  C  C+ ++V  
Sbjct: 16  YKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSSSPKCTACQESIVKD 63

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCID-AWLSAHNTCPVCRANLVPQP 191
           L C +CL+   +  T     +C H F  DCI  A  S +  CP CR  LV + 
Sbjct: 55  LMCPICLDMLKNTMT---TKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQP 191
             C  C        T     +C H    DC+     A   +CP CR +L    
Sbjct: 79  FMCVCCQELVYQPVTT----ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNY 127

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 185
            L C+ C N   +      +  C H+F  +C+   +     CPVC  
Sbjct: 22  LLRCSRCTNILREPVC---LGGCEHIFCSNCVSDCIG--TGCPVCYT 63

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCI-DAWLSAHNTCPVCRANLVPQPGETPSSF 198
            +C +C+    +  TL     C+H     C       A   CP CR  +           
Sbjct: 16  CQCGICMEILVEPVTLP----CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRN 71

Query: 199 IPV 201
             V
Sbjct: 72  SLV 74

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 196
           L C  C  E    + L     C H     C++   ++   CP+C+A   P   +TP+
Sbjct: 7   LRCQQCQAEAKCPKLL----PCLHTLCSGCLE---ASGMQCPICQAP-WPLGADTPA 55

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQPGETPS 196
           S+ C +C +   D     +   C H+F   CI   L      CP CR    P   E+P 
Sbjct: 23  SISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPV 77

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNT-CPVCRANLVPQPGET 194
           +EC +C+     ++       C +     C     +  N  CP CR      P   
Sbjct: 12  VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH 177
           GS  C +CL E+  E+   +  +C  +F   C+  ++   
Sbjct: 4   GSSGCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVELL 42

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQP 191
             EC +CL    +     +   C H F   CI   +      CPV    L+   
Sbjct: 18  KYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQP 191
             EC +CL    +     +   C H F   CI   +      CPV    L+   
Sbjct: 18  KYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 142 CAVCLNEFGDEETLRLIPKCS---HVFHMDCIDAWL--SAHNTCPVCRA 185
           C +C  E  DE  L     C+   H  H  C+  W+  S    C +C+ 
Sbjct: 18  CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKY 66

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVCRA 185
           LEC +CL    +  +     KC H+F   C+   L+       CP+C+ 
Sbjct: 22  LECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.65
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.57
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.5
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.46
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.46
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.44
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.44
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.44
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.35
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.35
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.32
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.31
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.3
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.25
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.25
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.24
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.23
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.22
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.21
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.17
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.13
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.12
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.11
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.1
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.1
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.1
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.09
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.06
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.06
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.03
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.03
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.01
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.99
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.98
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.97
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.96
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.95
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.95
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.92
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.87
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.84
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.82
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.82
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.81
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.8
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.8
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.75
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.75
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.72
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.71
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.7
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.68
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.58
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.57
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.57
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.56
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.51
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.46
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.43
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.36
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.34
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.31
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.26
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.24
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.96
3nw0_A	238	Non-structural maintenance of chromosomes element	97.88
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.96
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.67
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.87
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	85.68
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	84.17
1we9_A	64	PHD finger family protein; structural genomics, PH	83.3
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	83.12

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.65  E-value=1.2e-16  Score=126.02  Aligned_cols=81  Identities=26%  Similarity=0.625  Sum_probs=69.0

Q ss_pred             cccccCCCCCHHHHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccc
Q 039186          106 RSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA  185 (334)
Q Consensus       106 ~~~~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~  185 (334)
                      .......|++++.++.+|.+.+.....  .......|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+
T Consensus         9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~   85 (91)
T 2l0b_A            9 SHMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRC   85 (91)
T ss_dssp             CCSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred             CCCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCc
Confidence            345668899999999999998875432  2245678999999999988888898 9999999999999999999999999


Q ss_pred             cccC
Q 039186          186 NLVP  189 (334)
Q Consensus       186 ~l~~  189 (334)
                      .+..
T Consensus        86 ~~~~   89 (91)
T 2l0b_A           86 MFPP   89 (91)
T ss_dssp             BSSC
T ss_pred             cCCC
Confidence            8864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=2.9e-16  Score=119.02  Aligned_cols=69  Identities=35%  Similarity=0.894  Sum_probs=57.3

Q ss_pred             HHhhCCccchhhhHhhhcCCCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          118 VINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       118 ~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      .++.+|.++|....   ...+...|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+++.+.
T Consensus         5 ~i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            45677887776432   2235678999999999998888898 999999999999999999999999998754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.50  E-value=1.3e-14  Score=103.02  Aligned_cols=51  Identities=51%  Similarity=1.228  Sum_probs=46.4

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +..+|+||++.|..++.+..++.|+|.||..||.+|+..+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            467899999999998888888779999999999999999999999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.6e-14  Score=105.81  Aligned_cols=52  Identities=35%  Similarity=0.891  Sum_probs=47.4

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ....|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||+.+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL   65 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred             CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence            4678999999999998888888 999999999999999889999999998753

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.46  E-value=4.5e-14  Score=104.93  Aligned_cols=53  Identities=36%  Similarity=0.993  Sum_probs=47.6

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      .....|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+...
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            35678999999998888888888 999999999999999989999999998754

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.8e-14  Score=110.18  Aligned_cols=52  Identities=31%  Similarity=0.790  Sum_probs=42.9

Q ss_pred             CCCcCccccccccC-----------CcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGD-----------EETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ++..|+||+++|.+           ++.++.++.|+|.||..||.+||..+.+||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45679999988854           34455666699999999999999999999999998864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=8.4e-14  Score=105.85  Aligned_cols=52  Identities=46%  Similarity=1.112  Sum_probs=47.5

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ...+|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||+.+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            4678999999999988888888 999999999999999889999999998754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.44  E-value=1.4e-13  Score=111.97  Aligned_cols=60  Identities=27%  Similarity=0.603  Sum_probs=47.1

Q ss_pred             CCCcCccccccccCCc---------------ceEEcCCCCCccchhHHHHHH-----hcCCCcccccccccCCCCCCCCC
Q 039186          138 GSLECAVCLNEFGDEE---------------TLRLIPKCSHVFHMDCIDAWL-----SAHNTCPVCRANLVPQPGETPSS  197 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl-----~~~~tCP~CR~~l~~~~~~~~~~  197 (334)
                      .+.+|+||++.|..+.               .+++++ |+|.||..||..|+     ..+.+||+||+.+....+..+.+
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g  102 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG  102 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence            3568999999997653               344666 99999999999999     45668999999998766655544


Q ss_pred             C
Q 039186          198 F  198 (334)
Q Consensus       198 ~  198 (334)
                      .
T Consensus       103 ~  103 (114)
T 1v87_A          103 K  103 (114)
T ss_dssp             S
T ss_pred             e
Confidence            3

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.35  E-value=1.4e-13  Score=112.06  Aligned_cols=66  Identities=29%  Similarity=0.529  Sum_probs=50.5

Q ss_pred             CCccchhhhHhhhcCCCCCcCccccccccCCc---------------ceEEcCCCCCccchhHHHHHHhcCCCccccccc
Q 039186          122 FPTFLYSAVRELKIGKGSLECAVCLNEFGDEE---------------TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN  186 (334)
Q Consensus       122 lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~  186 (334)
                      +...+++.+.....+..+..|+||++.|...-               .++.++ |+|.||..||.+||..+.+||+||++
T Consensus        20 ~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~   98 (106)
T 3dpl_R           20 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNRE   98 (106)
T ss_dssp             EEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred             eeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCc
Confidence            33344444444445556789999999997541               255566 99999999999999999999999998


Q ss_pred             cc
Q 039186          187 LV  188 (334)
Q Consensus       187 l~  188 (334)
                      +.
T Consensus        99 ~~  100 (106)
T 3dpl_R           99 WE  100 (106)
T ss_dssp             CC
T ss_pred             ce
Confidence            64

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.35  E-value=5.4e-13  Score=94.43  Aligned_cols=50  Identities=28%  Similarity=0.800  Sum_probs=42.9

Q ss_pred             CCCcCccccccccCCc-ceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEE-TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +..+|+||++.|.+++ .+..++ |+|.||..||..|+..+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4678999999996543 466676 9999999999999998899999998874

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.32  E-value=6.7e-13  Score=98.69  Aligned_cols=53  Identities=28%  Similarity=0.792  Sum_probs=44.7

Q ss_pred             CCCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      .+...|+||++.|.++    .....++ |||.||..||..|+..+.+||+||+.+...
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            3567899999999764    4456676 999999999999999989999999998743

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6.1e-13  Score=98.12  Aligned_cols=51  Identities=29%  Similarity=0.812  Sum_probs=43.2

Q ss_pred             CCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      +...|+||++.|.++    ..+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            467899999999764    3345676 99999999999999988999999998753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.30  E-value=8.4e-13  Score=95.93  Aligned_cols=51  Identities=27%  Similarity=0.754  Sum_probs=43.4

Q ss_pred             CCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      +..+|+||++.+.++    +.+..++ |||.||..||..|+..+.+||+||+.+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            357899999999764    3445666 99999999999999988999999999864

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.25  E-value=2.1e-13  Score=112.84  Aligned_cols=68  Identities=26%  Similarity=0.462  Sum_probs=9.6

Q ss_pred             CCccchhhhHhhhcCCCCCcCccccccccCCc--------------ceEEcCCCCCccchhHHHHHHhcCCCcccccccc
Q 039186          122 FPTFLYSAVRELKIGKGSLECAVCLNEFGDEE--------------TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL  187 (334)
Q Consensus       122 lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l  187 (334)
                      +...+++.+.....+..++.|+||++.|.++.              ....++.|+|.||..||.+||..+.+||+||+++
T Consensus        31 ~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           31 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             EEEEEEEEEEEEEECCCC--------------------------------------------------------------
T ss_pred             eEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence            34444555555555556789999999997531              1222234999999999999999999999999987


Q ss_pred             cC
Q 039186          188 VP  189 (334)
Q Consensus       188 ~~  189 (334)
                      ..
T Consensus       111 ~~  112 (117)
T 4a0k_B          111 EF  112 (117)
T ss_dssp             --
T ss_pred             ee
Confidence            53

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5.7e-12  Score=97.42  Aligned_cols=51  Identities=27%  Similarity=0.795  Sum_probs=43.2

Q ss_pred             CCCcCccccccccCCcceEEcCCCC-----CccchhHHHHHHhcC--CCcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCS-----HVFHMDCIDAWLSAH--NTCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~  190 (334)
                      ++..|.||+++|.+++.+ ++| |+     |.||..||++||..+  .+||+||+.+...
T Consensus        14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            457899999999877776 577 96     999999999999765  4899999998654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.24  E-value=4.2e-12  Score=93.75  Aligned_cols=49  Identities=29%  Similarity=0.800  Sum_probs=42.3

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +....|+||++.+.++  ...+| |||.||..||..|+..+.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            3467899999998654  45676 9999999999999998899999999885

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=2.2e-12  Score=95.99  Aligned_cols=49  Identities=35%  Similarity=0.988  Sum_probs=42.5

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      .+...|+||++.+.+    ..+| |+|.||..||..|+..+.+||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            346789999999876    4566 999999999999999889999999998743

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=95.29  Aligned_cols=52  Identities=27%  Similarity=0.721  Sum_probs=43.8

Q ss_pred             CCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhcC---CCcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSAH---NTCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~~---~tCP~CR~~l~~~  190 (334)
                      +..+|+||++.|.+.+. .+.++ |||.||..||..|+..+   .+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            46789999999987654 56676 99999999999999865   6899999988643

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=9.3e-12  Score=93.30  Aligned_cols=50  Identities=24%  Similarity=0.535  Sum_probs=42.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      ....|+||++.|.++  +.+++ |+|.||..||..|+..+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           14 PYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             GGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             CCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            357899999999764  33345 999999999999998888999999998754

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=9e-12  Score=93.14  Aligned_cols=48  Identities=29%  Similarity=0.643  Sum_probs=41.4

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      +...|+||++.+.++   ..++ |+|.||..||..|+..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            457899999998665   3456 99999999999999988999999999864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.6e-11  Score=91.63  Aligned_cols=50  Identities=16%  Similarity=0.538  Sum_probs=42.2

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~~  190 (334)
                      ...+|+||++.|..++...   .|+|.||..||.+||+.+  .+||+||+++...
T Consensus        14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            4568999999998765442   599999999999999877  7899999988643

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=3.5e-11  Score=88.52  Aligned_cols=48  Identities=25%  Similarity=0.618  Sum_probs=40.8

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH-hcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl-~~~~tCP~CR~~l~~  189 (334)
                      +...|+||++.+.++..   ++ |||.||..||..|+ ....+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            46789999999987654   45 99999999999999 456689999999864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.11  E-value=2.7e-11  Score=99.83  Aligned_cols=53  Identities=28%  Similarity=0.792  Sum_probs=44.8

Q ss_pred             CCCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      .+...|+||++.|.++    .....++ |||.||..||.+|+..+.+||+||+.+...
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            3567999999999765    3446666 999999999999999999999999998643

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.10  E-value=4.1e-11  Score=90.41  Aligned_cols=49  Identities=33%  Similarity=0.706  Sum_probs=40.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~~  189 (334)
                      ....|+||++.|.++..   ++.|||.||..||..|+..+  .+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~p~~---~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           14 DELLCLICKDIMTDAVV---IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             GGGSCSSSCCCCTTCEE---CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCcCCChHHhCCeE---cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            35789999999987643   44499999999999999765  589999997653

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.10  E-value=3e-11  Score=101.90  Aligned_cols=47  Identities=30%  Similarity=0.878  Sum_probs=40.9

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      +..|+||++.|.++   .++| |||.||..||..|+..+.+||+||.++..
T Consensus        53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            46899999999765   3456 99999999999999999999999999853

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=4.4e-11  Score=89.30  Aligned_cols=48  Identities=25%  Similarity=0.671  Sum_probs=39.9

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh---cCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS---AHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~CR~~l~~  189 (334)
                      ....|+||++.|.++   ..++ |||.||..||..|+.   ...+||+||..+..
T Consensus        19 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             cCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            467999999998754   3445 999999999999996   45589999999864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=3.9e-11  Score=91.81  Aligned_cols=47  Identities=21%  Similarity=0.519  Sum_probs=41.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ....|+||++.|.++.   +++ |+|.||..||..|+....+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNPV---VTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSEE---ECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCee---Ecc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4678999999996643   466 9999999999999998889999999985

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.06  E-value=7.6e-11  Score=89.34  Aligned_cols=48  Identities=25%  Similarity=0.605  Sum_probs=41.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      ..+.|+||++.|.++..   ++ |||.||..||..|+.. +.+||+||..+..
T Consensus         7 ~~~~C~IC~~~~~~Pv~---~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVI---VS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEEE---ET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCCCccccccCCEE---cC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            46799999999987643   45 9999999999999986 7789999998864

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.7e-10  Score=88.05  Aligned_cols=48  Identities=29%  Similarity=0.775  Sum_probs=41.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc------CCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA------HNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~  189 (334)
                      +...|+||++.+.++..   ++ |+|.||..||..|+..      ...||+||..+..
T Consensus        18 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           18 EEVTCPICLELLTQPLS---LD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCTTTCSCCSSCBC---CS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             CCCCCCCCCcccCCcee---CC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            46789999999977643   45 9999999999999976      6789999999874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.05  E-value=1e-10  Score=85.69  Aligned_cols=50  Identities=20%  Similarity=0.540  Sum_probs=40.5

Q ss_pred             CCcCccccc-cccCCcce-EEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          139 SLECAVCLN-EFGDEETL-RLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      +..|+||++ .+.++... ..++ |||.||..||..|+.. ..+||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            568999999 78776543 3455 9999999999999754 4579999999864

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.04  E-value=1.4e-10  Score=88.55  Aligned_cols=48  Identities=27%  Similarity=0.654  Sum_probs=40.9

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc------CCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA------HNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~------~~tCP~CR~~l~~  189 (334)
                      +...|+||++.|.++.   .++ |+|.||..||..|+..      ...||+||..+..
T Consensus        18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           18 EEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             TTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             cCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            4578999999997764   466 9999999999999976      5689999999864

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.04  E-value=8.8e-11  Score=93.18  Aligned_cols=48  Identities=29%  Similarity=0.714  Sum_probs=40.7

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++  +.+++ |||.||..||..|+..+.+||+||..+..
T Consensus        22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            46899999999764  32235 99999999999999988899999998864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.03  E-value=6.2e-11  Score=89.71  Aligned_cols=48  Identities=23%  Similarity=0.624  Sum_probs=41.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-------CCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-------HNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-------~~tCP~CR~~l~~  189 (334)
                      +...|+||++.|.++..   ++ |||.||..||..|+..       ..+||+||..+..
T Consensus        11 ~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           11 EEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            46789999999987644   45 9999999999999976       5689999999864

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.03  E-value=6.9e-11  Score=94.42  Aligned_cols=48  Identities=31%  Similarity=0.781  Sum_probs=40.3

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-CCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++  +..++ |||.||..||..|+... .+||+||.++..
T Consensus        22 ~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            57899999999764  32255 99999999999999877 699999999853

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.01  E-value=1.6e-10  Score=93.25  Aligned_cols=48  Identities=31%  Similarity=0.720  Sum_probs=41.4

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++  +.+++ |||.||..||..|+..+.+||+||..+..
T Consensus        15 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           15 HLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             cCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            57899999999764  33346 99999999999999988999999999864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.99  E-value=1.5e-10  Score=95.39  Aligned_cols=53  Identities=30%  Similarity=0.824  Sum_probs=44.1

Q ss_pred             CCCCCcCccccccccCC----cceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          136 GKGSLECAVCLNEFGDE----ETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ..+...|+||++.|.++    .....++ |||.||..||++|+..+.+||+||+++..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~  125 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH  125 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence            34567899999999753    2335565 99999999999999999999999999864

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2.5e-10  Score=83.04  Aligned_cols=42  Identities=29%  Similarity=0.740  Sum_probs=35.3

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh---cCCCcccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS---AHNTCPVC  183 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~---~~~tCP~C  183 (334)
                      +...|+||++.|.++.   .++ |||.||..||..|+.   ...+||+|
T Consensus        19 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQKPV---TID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSSCE---ECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCCeE---EeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4678999999997653   345 999999999999997   45589998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.97  E-value=3.2e-10  Score=93.64  Aligned_cols=47  Identities=28%  Similarity=0.598  Sum_probs=39.9

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++.   .++ |||.||..||..|+..+. +||+||..+..
T Consensus        52 ~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRPI---TTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSEE---ECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCcE---Eee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            468999999998653   345 999999999999997554 89999999865

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.9e-10  Score=80.22  Aligned_cols=42  Identities=36%  Similarity=0.863  Sum_probs=35.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHH---hcCCCcccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL---SAHNTCPVC  183 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl---~~~~tCP~C  183 (334)
                      ....|+||++.+.++..   ++ |+|.||..||..|+   ..+.+||+|
T Consensus        14 ~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEPVI---IE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSCCC---CS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCccEe---CC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            46789999999987643   45 99999999999995   456689998

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.95  E-value=3.1e-10  Score=98.17  Aligned_cols=48  Identities=35%  Similarity=0.809  Sum_probs=40.4

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++  +.+++ |||.||..||..|+.. +.+||+||..+..
T Consensus        54 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           54 ELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            45899999999764  43456 9999999999999986 7789999999854

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.95  E-value=3.1e-10  Score=88.60  Aligned_cols=48  Identities=33%  Similarity=0.730  Sum_probs=39.6

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~CR~~l~  188 (334)
                      ..+.|+||++.|.++.   .++.|||.||..||..|+...  .+||+||..+.
T Consensus        12 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           12 DELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             TTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            4678999999998764   344499999999999999643  58999999874

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.92  E-value=6.5e-10  Score=89.54  Aligned_cols=47  Identities=28%  Similarity=0.779  Sum_probs=39.8

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC---CcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++..   ++ |||.||..||..|+..+.   +||+||..+..
T Consensus        21 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            4689999999977644   45 999999999999997654   89999998864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.87  E-value=1.1e-09  Score=94.02  Aligned_cols=48  Identities=29%  Similarity=0.602  Sum_probs=40.8

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccCC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQ  190 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~~  190 (334)
                      ...|+||++.|.++..   ++ |||.||..||..|+.... +||+||..+...
T Consensus        78 ~~~C~IC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQPVT---TE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSEEE---CT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCCEE---cC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4789999999976543   55 999999999999998665 899999998754

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.84  E-value=1.2e-09  Score=84.83  Aligned_cols=47  Identities=19%  Similarity=0.153  Sum_probs=41.5

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ..+.|+||++.|.++..   ++ |||.|+..||..|+..+.+||+|+..+.
T Consensus        13 ~~~~CpI~~~~m~dPV~---~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~   59 (85)
T 2kr4_A           13 DEFRDPLMDTLMTDPVR---LP-SGTVMDRSIILRHLLNSPTDPFNRQMLT   59 (85)
T ss_dssp             TTTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             hheECcccCchhcCCeE---CC-CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence            46899999999988744   45 9999999999999998889999998875

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.82  E-value=9.1e-10  Score=90.26  Aligned_cols=48  Identities=29%  Similarity=0.635  Sum_probs=40.5

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~  189 (334)
                      +...|+||++.+.++   ..++ |||.||..||..|+.... +||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            357899999999766   3455 999999999999997665 89999998864

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.82  E-value=1.8e-09  Score=86.67  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ..+.|+||++.|.++..+   + |||.|+..||..||..+.+||+|+.++..
T Consensus        28 ~~~~CpI~~~~m~dPV~~---~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           28 DEFRDPLMDTLMTDPVRL---P-SGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             TTTBCTTTCSBCSSEEEE---T-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             HhhCCcCccCcccCCeEC---C-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            467999999999887544   4 99999999999999988899999998863

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.81  E-value=6.2e-10  Score=90.59  Aligned_cols=47  Identities=21%  Similarity=0.697  Sum_probs=39.5

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++.   .++ |||.||..||..|+.. ..+||+||..+..
T Consensus        15 ~~~C~iC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILVEPV---TLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCSSCE---ECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccCcee---EcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            468999999997653   345 9999999999999976 5689999999863

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.80  E-value=2.3e-09  Score=85.71  Aligned_cols=48  Identities=19%  Similarity=0.168  Sum_probs=41.9

Q ss_pred             CCCcCccccccccCCcceEEcCCCC-CccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCS-HVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ..+.|+||++.|.++..   ++ || |.|+..||..||..+.+||+||.++..
T Consensus        21 ~~~~CpI~~~~m~dPV~---~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDPVV---LP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSEEE---CT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HhcCCcCccccccCCeE---CC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            36789999999988754   45 99 999999999999988899999998863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.80  E-value=1.6e-09  Score=88.19  Aligned_cols=47  Identities=32%  Similarity=0.709  Sum_probs=39.9

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      ...|+||++.|.++..   ++ |||.||..||..|+.. ..+||+||..+..
T Consensus        23 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHILADPVE---TS-CKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcHhcCcEE---cC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            4689999999976533   55 9999999999999976 6789999999864

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.78  E-value=4.4e-09  Score=80.68  Aligned_cols=53  Identities=17%  Similarity=0.469  Sum_probs=40.5

Q ss_pred             CCCCcCccccccccCCcc-eEEcCCCCCccchhHHHHHHhc-CCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDEET-LRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~~  190 (334)
                      +++..|+||++.+...+. +.-++ |||.||..|+..|+.. ...||+||+.+...
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            346789999999864432 22233 9999999999999853 45799999998754

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=2.8e-09  Score=78.46  Aligned_cols=48  Identities=19%  Similarity=0.430  Sum_probs=39.0

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +.+|.||++.+.+.. +..+| |||. ||..|+..|+..+..||+||+++.
T Consensus         8 ~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            8 IEPCVICQGRPKNGC-IVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GSCCTTTSSSCSCEE-EEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             cCCCCcCCCCCCCEE-EECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            568999999865431 11347 9999 899999999988889999999874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.75  E-value=2.5e-09  Score=90.82  Aligned_cols=48  Identities=21%  Similarity=0.453  Sum_probs=40.5

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~  189 (334)
                      +.+.|+||++.|.++.   .++ |||.||..||..|+.... +||+||.++..
T Consensus        30 ~~~~C~IC~~~~~~pv---~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           30 AKYLCSACRNVLRRPF---QAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             cCcCCCCCChhhcCcE---ECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            4678999999998773   355 999999999999998665 89999998753

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.75  E-value=2.8e-09  Score=76.22  Aligned_cols=47  Identities=30%  Similarity=0.617  Sum_probs=38.8

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ  190 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~  190 (334)
                      .+...|+||++.|.++.   .+| |+|.||..||..|   ...||+||+.+..+
T Consensus         4 ~~~~~C~IC~~~~~~p~---~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPK---LLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCCS---CST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCeE---EcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            45678999999998763   455 9999999999884   56899999998754

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.72  E-value=5.8e-09  Score=102.19  Aligned_cols=49  Identities=24%  Similarity=0.762  Sum_probs=41.1

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCcccccccccC
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLVP  189 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~~  189 (334)
                      ....+|+||++.+.+   ...+| |||.||..||..|+. .+.+||+||+.+..
T Consensus       330 ~~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          330 STFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG  379 (389)
T ss_dssp             TSSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred             CCCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence            345799999999855   34566 999999999999998 67899999999864

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.71  E-value=2.8e-09  Score=102.40  Aligned_cols=54  Identities=26%  Similarity=0.605  Sum_probs=41.4

Q ss_pred             CCCCCcCccccccccCCc----ceEEcCCCCCccchhHHHHHHhcC-----------CCcccccccccC
Q 039186          136 GKGSLECAVCLNEFGDEE----TLRLIPKCSHVFHMDCIDAWLSAH-----------NTCPVCRANLVP  189 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~Wl~~~-----------~tCP~CR~~l~~  189 (334)
                      .++..+|+||++.+.++.    .....++|+|.||..||.+||.+.           .+||.||+++..
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            346779999999998722    222334699999999999999642           369999998863

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.70  E-value=4.2e-09  Score=77.27  Aligned_cols=48  Identities=19%  Similarity=0.462  Sum_probs=39.1

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ...|.||++.+.+.. +..+| |||. ||..|+..|......||+||+++.
T Consensus         7 ~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            7 LKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             CCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            468999999864432 22347 9998 999999999988889999999884

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.68  E-value=6.8e-09  Score=84.86  Aligned_cols=45  Identities=29%  Similarity=0.702  Sum_probs=38.3

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ...|+||++.|.++..  +.+ |||.||..||..|+.  ..||+||..+.
T Consensus        22 ~~~C~IC~~~~~~pv~--~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNILREPVC--LGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSCCSSCBC--CCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             CCCCCCCChHhhCccE--eCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            5789999999976632  225 999999999999998  78999999985

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.58  E-value=1.6e-08  Score=93.05  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=40.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~  188 (334)
                      ..+.|+||++.|.++..   +| |||.||..||..|+.. ..+||+||.++.
T Consensus       207 ~~~~c~i~~~~~~dPv~---~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          207 DYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             STTBCTTTCSBCSSEEE---CS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             cccCCcCcCCHhcCCeE---CC-CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence            46789999999988744   45 9999999999999975 445999999885

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.57  E-value=2.8e-08  Score=78.04  Aligned_cols=48  Identities=27%  Similarity=0.715  Sum_probs=40.6

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc--------CCCccc--cccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA--------HNTCPV--CRAN  186 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~--------~~tCP~--CR~~  186 (334)
                      +..+|+||++++..++.+.+.+ |+|.||.+||..|+..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4678999999998887777766 9999999999999853        137999  9987

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=1.8e-08  Score=79.47  Aligned_cols=46  Identities=20%  Similarity=0.510  Sum_probs=37.8

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC------CCccc--cccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH------NTCPV--CRAN  186 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~------~tCP~--CR~~  186 (334)
                      ..+.|+||++.|.++..   ++.|||.|+..||..||..+      .+||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dPV~---~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVK---NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSEEE---ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCCEE---cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            46789999999987643   33499999999999999754      48999  9866

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.56  E-value=7.9e-09  Score=78.00  Aligned_cols=43  Identities=23%  Similarity=0.663  Sum_probs=36.0

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ...|+||++.+.+.   ..+| |||. ||..|+..|    ..||+||..+..
T Consensus        24 ~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            46899999997553   4556 9999 999999999    789999998853

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.51  E-value=2.8e-08  Score=86.14  Aligned_cols=48  Identities=29%  Similarity=0.636  Sum_probs=40.2

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC-CcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~-tCP~CR~~l~~  189 (334)
                      +.+.|+||++.|.++.   .++ |||.||..||..|+.... +||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~pv---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           17 SKYECPICLMALREAV---QTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGGBCTTTCSBCSSEE---ECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCChhhcCcE---ECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            3578999999998762   355 999999999999997644 89999998864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.46  E-value=9.7e-08  Score=69.57  Aligned_cols=48  Identities=23%  Similarity=0.678  Sum_probs=37.0

Q ss_pred             CCCCcCccccccccCCcceEEcCCCC--C---ccchhHHHHHHhc--CCCccccccccc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCS--H---VFHMDCIDAWLSA--HNTCPVCRANLV  188 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~CI~~Wl~~--~~tCP~CR~~l~  188 (334)
                      ++...|.||+++..  +.+ ++| |.  |   .||..|+.+|+..  +.+||+|++.+.
T Consensus         4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            35678999999843  334 566 65  4   8999999999964  568999998874

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.43  E-value=6.6e-08  Score=85.38  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=40.3

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-CCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~  189 (334)
                      ..+.|+||++.|.++..   +| |||.|+..||..|+..+ .+||+|+.++..
T Consensus       105 ~~f~CPI~~elm~DPV~---~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMREPCI---TP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSSEEE---CT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCCCeE---CC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            56889999999988644   45 99999999999999763 479999988753

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=2.6e-07  Score=68.76  Aligned_cols=44  Identities=32%  Similarity=0.756  Sum_probs=36.2

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      +...|.||++.+.   .+.++| |+|. ||..|+..    ...||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            4678999999853   356777 9999 99999985    4789999998864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=2.2e-07  Score=70.03  Aligned_cols=43  Identities=23%  Similarity=0.663  Sum_probs=34.9

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ...|+||++.+.+.   ..+| |||. ||..|+..+    ..||+||.++..
T Consensus        25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhCC----CCCccCCceecC
Confidence            45899999997654   3456 9999 999999753    789999999864

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.31  E-value=2.4e-07  Score=67.59  Aligned_cols=48  Identities=17%  Similarity=0.326  Sum_probs=40.3

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      .+.|+||++.|.++  + +++.|||+|...||.+|+..+.+||+++.++..
T Consensus         3 ~~~CpIs~~~m~dP--V-~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            3 HMLCAISGKVPRRP--V-LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             -CCCTTTCSCCSSE--E-EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             eEEecCCCCCCCCC--E-EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            36899999999876  3 443499999999999999888899999998863

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.26  E-value=2.5e-07  Score=70.76  Aligned_cols=43  Identities=30%  Similarity=0.734  Sum_probs=35.5

Q ss_pred             CCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ...|.||++.+.+   ...+| |||. ||..|+..|    ..||+||..+..
T Consensus        18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            4589999998644   45667 9999 999999987    489999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.24  E-value=4.2e-07  Score=84.54  Aligned_cols=48  Identities=27%  Similarity=0.560  Sum_probs=39.5

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--CCccc--cccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--NTCPV--CRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--~tCP~--CR~~l~  188 (334)
                      ....|+||++.|.++..  .. .|||.||..||..|+..+  .+||+  |+..+.
T Consensus       180 ~el~CPIcl~~f~DPVt--s~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAPLI--SR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSEEE--ES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCCee--eC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            45679999999987743  34 499999999999999754  37999  999775

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.04  E-value=8.9e-07  Score=85.61  Aligned_cols=43  Identities=28%  Similarity=0.779  Sum_probs=36.3

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCc-cchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHV-FHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      +...|+||++.+.++   ..+| |||. ||..|+..|    ..||+||..+.
T Consensus       294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            457899999998553   4456 9999 999999998    78999999885

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.96  E-value=4.8e-06  Score=66.36  Aligned_cols=45  Identities=31%  Similarity=0.615  Sum_probs=37.3

Q ss_pred             cCccccccccCCcceEEcCCCCCccchhHHHHHHh-cCCCccccccccc
Q 039186          141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-AHNTCPVCRANLV  188 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-~~~tCP~CR~~l~  188 (334)
                      .|.+|--.+  ..-.|++| |+|+||.+|+..|.+ ..++||.|+.++.
T Consensus         3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            478887776  44578898 999999999999984 5678999999885

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.88  E-value=1.2e-05  Score=73.80  Aligned_cols=50  Identities=16%  Similarity=0.536  Sum_probs=41.3

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC--CcccccccccCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--TCPVCRANLVPQ  190 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~--tCP~CR~~l~~~  190 (334)
                      ...+|+||.+.+..+..+   +.|+|.||..|+..|++.+.  .||.|+..+...
T Consensus       179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            467899999999876443   35999999999999997655  899999987644

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.96  E-value=0.016  Score=42.52  Aligned_cols=48  Identities=23%  Similarity=0.568  Sum_probs=34.8

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----CcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~l~~  189 (334)
                      ....|.||.+.   ++.+ .--.|...||..|++..|....    .||.|.+...+
T Consensus        11 ~~~~C~vC~~~---~~ll-~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p   62 (66)
T 2lri_C           11 PGARCGVCGDG---TDVL-RCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP   62 (66)
T ss_dssp             TTCCCTTTSCC---TTCE-ECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred             CCCCcCCCCCC---CeEE-ECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence            35679999853   4444 4446999999999998886433    69999766543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.87  E-value=0.035  Score=43.22  Aligned_cols=34  Identities=15%  Similarity=0.462  Sum_probs=26.6

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHH
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAW  173 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W  173 (334)
                      +..|.||++.+..+....-+. |+|.||..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            468999998754444554565 9999999999984

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=85.68  E-value=0.57  Score=33.42  Aligned_cols=46  Identities=28%  Similarity=0.661  Sum_probs=32.2

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN  186 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~  186 (334)
                      ..+..|.||...   ++ +..-..|.-.||..|+..-+...    -.||.|...
T Consensus         9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            346789999873   43 43444688999999999865322    269999653

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=84.17  E-value=0.3  Score=42.28  Aligned_cols=45  Identities=38%  Similarity=0.653  Sum_probs=32.6

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN  186 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~  186 (334)
                      ++..|.||...   ++ +.....|.-.||..|+.+-+...    -.||.|+..
T Consensus         3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   51 (184)
T 3o36_A            3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL   51 (184)
T ss_dssp             SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence            45679999854   44 43445699999999998876532    269999754

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=83.30  E-value=0.53  Score=33.60  Aligned_cols=50  Identities=22%  Similarity=0.513  Sum_probs=34.4

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCccccccc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRAN  186 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~  186 (334)
                      .+...|+||...+.++.....--.|..=||..|+..-..     ..-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            356789999998865444444445888899999865432     23469999653

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=83.12  E-value=0.34  Score=42.86  Aligned_cols=46  Identities=35%  Similarity=0.629  Sum_probs=33.4

Q ss_pred             CCCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Cccccccc
Q 039186          137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRAN  186 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~  186 (334)
                      ..+..|.+|...   ++ +.....|...||..|+.+-+....    .||.|+..
T Consensus         5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~   54 (207)
T 3u5n_A            5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI   54 (207)
T ss_dssp             SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred             CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence            346789999854   33 445556999999999988765332    69999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-21
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-14
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-12
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	7e-12
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-10
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-09
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	4e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-08
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	7e-05
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.003
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 83.4 bits (206), Expect = 3e-21
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 188
            +ECAVCL E  D E  R +P+C H FH +C+D WL +H+TCP+CR  +V
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 65.4 bits (159), Expect = 2e-14
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 187
            C +CL +  +         C H F   CI  W+  + TCP+C+  +
Sbjct: 7   RCPICLEDPSNYSM---ALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 1e-12
 Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 14/64 (21%)

Query: 141 ECAVCLNEFGDEETLRLIP--------------KCSHVFHMDCIDAWLSAHNTCPVCRAN 186
            CA+C N   D                       C+H FH  CI  WL     CP+    
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 82

Query: 187 LVPQ 190
              Q
Sbjct: 83  WEFQ 86

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 7e-12
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNT-CPVCRANL 187
           +EC +C+     ++       C +     C     +  N  CP CR   
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG 192
           L C  C  E    + L     C H     C++A       CP+C+A       
Sbjct: 7   LRCQQCQAEAKCPKLL----PCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 3e-11
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 140 LECAVCLNEFGDEETLR-LIPKCSHVFHMDCIDAWLSA-HNTCPVCRANL 187
             C  C        +L+ ++  C H     C+D         CP C   L
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 2e-10
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 132 ELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWL-SAHNTCPVCRANL 187
             ++G     C +C       + +++ P C H+    C+ +W  S    CP CR  +
Sbjct: 16  YCEMGSTFQLCKICAEND---KDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN-TCPVCRANLVPQPGETPS- 196
           S+ C +C +   D         C H+F   CI   L      CP CR    P   E+P  
Sbjct: 23  SISCQICEHILADPVETS----CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVK 78

Query: 197 SFIPVLN 203
           SF+ +LN
Sbjct: 79  SFLNILN 85

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 50.2 bits (119), Expect = 3e-09
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 140 LECAVCLNEFGDEETLRLIPK-CSHVFHMDCIDAWLSAH--NTCPVCRA 185
             C +C  E G+E              H  C+  WL+      C +C  
Sbjct: 7   PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 4e-09
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRANLVPQPGETP 195
              +  ++      +  + KCSH FH+ C+ A            CP C+     + G  P
Sbjct: 41  YSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQP 100

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVCRANLVPQ 190
           LEC +CL    +  +     KC H+F   C+   L+       CP+C+ ++  +
Sbjct: 22  LECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 4e-07
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 190
            L C+ C N   +   L     C H+F  +C+   +     CPVC      Q
Sbjct: 22  LLRCSRCTNILREPVCL---GGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQ 68

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 137 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN--------TCPVCR 184
            GS  C +CL E+  E+   +  +C  +F   C+  ++            +CP   
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTI-AQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (87), Expect = 7e-05
 Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 9/62 (14%)

Query: 140 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFI 199
           + CA+              PK   +F    ++ ++      P+    L      +    +
Sbjct: 1   MLCAISGKVPRRPVL---SPKSRTIFEKSLLEQYVKDTGNDPITNEPL------SIEEIV 51

Query: 200 PV 201
            +
Sbjct: 52  EI 53

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNT----CPVCR 184
           C VC  + G+++ L L  +C+  FH+ C+   L         CP C+
Sbjct: 3   CKVC-RKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.003
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 8/48 (16%)

Query: 142 CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNT----CPVCRA 185
           C VC     D   L     C   +H+ C++  L         CP C  
Sbjct: 12  CRVC----KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.64
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.42
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.41
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.39
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.37
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.28
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.14
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.07
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.03
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.02
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.89
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.88
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.78
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.77
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.54
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.42
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	89.88
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	89.68
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	85.59
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	85.55
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	82.14
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	81.14

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.64  E-value=4.3e-17  Score=115.91  Aligned_cols=51  Identities=51%  Similarity=1.228  Sum_probs=46.7

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ++.+|+||+++|.+++.+..++.|+|.||..||.+|++.+.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            456899999999999888888779999999999999999999999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.1e-13  Score=111.37  Aligned_cols=61  Identities=26%  Similarity=0.584  Sum_probs=46.2

Q ss_pred             CCcCccccccccC---------------CcceEEcCCCCCccchhHHHHHHhc-----CCCcccccccccCCCCCCCCCC
Q 039186          139 SLECAVCLNEFGD---------------EETLRLIPKCSHVFHMDCIDAWLSA-----HNTCPVCRANLVPQPGETPSSF  198 (334)
Q Consensus       139 ~~~C~ICl~~~~~---------------~~~~~~lp~C~H~FH~~CI~~Wl~~-----~~tCP~CR~~l~~~~~~~~~~~  198 (334)
                      +..|+||+++|..               ...+.+++ |+|+||..||..||..     +.+||+||+.+..+.+..+.+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP~~~  103 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK  103 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred             cccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCCCCc
Confidence            5689999999853               22355666 9999999999999964     3479999999977766555444


Q ss_pred             cc
Q 039186          199 IP  200 (334)
Q Consensus       199 ~~  200 (334)
                      +.
T Consensus       104 ~~  105 (114)
T d1v87a_         104 ME  105 (114)
T ss_dssp             CC
T ss_pred             ee
Confidence            33

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.41  E-value=5.3e-14  Score=103.59  Aligned_cols=48  Identities=29%  Similarity=0.816  Sum_probs=41.9

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~  188 (334)
                      ..++|+||++.|.++  ++.+| |+|.||..||.+|+..+.+||+||+++.
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            467899999999653  55677 9999999999999999999999999875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.4e-14  Score=109.79  Aligned_cols=53  Identities=30%  Similarity=0.599  Sum_probs=43.3

Q ss_pred             CCCCCcCccccccccCCc---------------ceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          136 GKGSLECAVCLNEFGDEE---------------TLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       136 ~~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      +....+|+||++.+.+..               .+..++ |+|.||..||.+||..+.+||+||+++..
T Consensus        18 d~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          18 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             cCCCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            345678999999886533               245565 99999999999999999999999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.9e-14  Score=97.81  Aligned_cols=49  Identities=18%  Similarity=0.451  Sum_probs=40.4

Q ss_pred             CcCccccccccCCcce-EEcCCCCCccchhHHHHHHhcC-CCcccccccccC
Q 039186          140 LECAVCLNEFGDEETL-RLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLVP  189 (334)
Q Consensus       140 ~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~  189 (334)
                      .+|+||+++|..++.. ..++ |||.||..||.+|+... .+||+||+++.+
T Consensus         1 leCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            4799999999876654 4445 99999999999999754 479999999863

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.4e-12  Score=95.06  Aligned_cols=50  Identities=22%  Similarity=0.478  Sum_probs=39.5

Q ss_pred             CCcCccccccccCC--cceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          139 SLECAVCLNEFGDE--ETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~--~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      +..|+||++.+..+  ..+.+++ |||.||..||..|+.. +.+||+||+.+..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            56899999986432  2445565 9999999999999954 4579999998853

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.5e-12  Score=95.82  Aligned_cols=48  Identities=25%  Similarity=0.785  Sum_probs=40.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~~  189 (334)
                      ....|+||++.+.+   .+++| |||.||..||..||.. +++||+||..|..
T Consensus        22 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~   70 (79)
T d1fbva4          22 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKG   70 (79)
T ss_dssp             CTTBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCC
T ss_pred             CCCCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccC
Confidence            34579999999754   45677 9999999999999975 5689999999974

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=5.9e-12  Score=89.05  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      .|+||++.|.++.   .++.|||+||.+||.+||..+.+||+||.++..
T Consensus         2 ~C~Ic~~~~~~Pv---~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCccCCchHHhcC---ccCCCCCcccHHHHHHHHhhccCCCccCCcCCH
Confidence            6999999997653   344699999999999999999999999998864

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-11  Score=86.88  Aligned_cols=47  Identities=30%  Similarity=0.643  Sum_probs=38.6

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccCCC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP  191 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~~~  191 (334)
                      ..++|+||++.|.++.   ++| |||.||..||.+|   +.+||+||+++...+
T Consensus         5 ~~l~C~IC~~~~~~p~---~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCPK---LLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCCS---CST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCCE---Eec-CCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            3469999999997764   456 9999999999876   568999999997543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.1e-11  Score=93.49  Aligned_cols=47  Identities=28%  Similarity=0.779  Sum_probs=39.4

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC---CcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN---TCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~---tCP~CR~~l~~  189 (334)
                      .+.|+||++.|.++..   ++ |||.||..||..|+....   .||+||.++..
T Consensus        21 ~l~CpIC~~~~~~pv~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CcCCCccCchhCCeEE---cC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            4689999999987643   45 999999999999996653   79999998853

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=4.2e-11  Score=91.98  Aligned_cols=48  Identities=31%  Similarity=0.676  Sum_probs=39.6

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-CCcccccccccCC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLVPQ  190 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~~  190 (334)
                      ...|+||++.|.++   .+++ |||.||..||..|++.+ .+||+||.++.+.
T Consensus        23 ~l~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CcCCccCCcchhcc---eecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            36899999998765   3565 99999999999999654 5899999988643

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.89  E-value=4.8e-10  Score=79.85  Aligned_cols=52  Identities=21%  Similarity=0.506  Sum_probs=38.1

Q ss_pred             CCCCcCccccccccCCcceE-EcCCCCCccchhHHHHHHh--cCCCccccccccc
Q 039186          137 KGSLECAVCLNEFGDEETLR-LIPKCSHVFHMDCIDAWLS--AHNTCPVCRANLV  188 (334)
Q Consensus       137 ~~~~~C~ICl~~~~~~~~~~-~lp~C~H~FH~~CI~~Wl~--~~~tCP~CR~~l~  188 (334)
                      ++...|.||++++.++.... ....|+|.||..||..|+.  .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45678999999986553321 1112469999999999994  4558999999874

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-10  Score=89.02  Aligned_cols=46  Identities=28%  Similarity=0.668  Sum_probs=38.0

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      .+.|+||++.|.++..  +.+ |||.||..||..|+.  ..||+||.++..
T Consensus        22 ~l~C~IC~~~~~~pv~--~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          22 LLRCSRCTNILREPVC--LGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             TTSCSSSCSCCSSCBC--CCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             cCCCccCCchhhcCce--eCC-CCCchhHHHHHHHHh--ccccccCCcCch
Confidence            5789999999987643  244 999999999999985  459999988753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=1.2e-09  Score=82.14  Aligned_cols=47  Identities=17%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhc-CCCccccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSA-HNTCPVCRANLV  188 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~-~~tCP~CR~~l~  188 (334)
                      +.+.|+||++.|.++.   +++ |||.||..||..|+.. +.+||+||.++.
T Consensus         6 ~~l~CpIc~~l~~dPv---~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~   53 (80)
T d2c2la2           6 DYLCGKISFELMREPC---ITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLT   53 (80)
T ss_dssp             STTBCTTTCSBCSSEE---ECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             ccccCcCcCchhhhhc---ccC-CcCeecHHHHHHHHhcCCccCCCcccccc
Confidence            4688999999998874   355 9999999999999964 557999999875

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.77  E-value=1.9e-09  Score=80.42  Aligned_cols=48  Identities=23%  Similarity=0.578  Sum_probs=40.7

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC-CCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH-NTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~-~tCP~CR~~l~~  189 (334)
                      +.+.|+||++.|.++.   +++ |||.||..||..|+..+ .+||.|+.++..
T Consensus         7 ~~l~CpIc~~~m~dPV---~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKDPV---IVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEE---EET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCcCcCchhhCce---Ecc-CCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            4689999999998874   345 99999999999999764 579999998864

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.9e-08  Score=78.50  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccccccccC
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP  189 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~CR~~l~~  189 (334)
                      ..+.|+||++.|.++.   +++.|+|.|+..||..||..+.+||+|+.++..
T Consensus        21 ~~f~CPI~~~lm~dPV---~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HHhCCcCchhHHHHHH---hcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            3689999999998874   445345689999999999999999999998863

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=5.1e-08  Score=74.74  Aligned_cols=47  Identities=26%  Similarity=0.648  Sum_probs=37.6

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC--------CCcccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH--------NTCPVCRA  185 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~--------~tCP~CR~  185 (334)
                      +..+|+||++++...+.+..++ |+|.||.+||..|+...        -+||.|.-
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4678999999998777776665 99999999999999521        15998643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.071  Score=34.92  Aligned_cols=44  Identities=32%  Similarity=0.762  Sum_probs=31.0

Q ss_pred             cCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Ccccccc
Q 039186          141 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRA  185 (334)
Q Consensus       141 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~  185 (334)
                      .|.||...-..+. +..-..|...||..|+..-+....    .||.|+.
T Consensus         2 ~C~vC~~~~~~~~-~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDK-LILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSC-CEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCC-EEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            4889976654444 444556999999999998764322    5999964

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.68  E-value=0.053  Score=37.28  Aligned_cols=49  Identities=22%  Similarity=0.531  Sum_probs=35.3

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHh-----cCCCccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLS-----AHNTCPVCRAN  186 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~-----~~~tCP~CR~~  186 (334)
                      ....|.||.....+++....-..|+.-||..|+..=..     .+-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            45689999998877665555567999999999864211     23479999753

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.2  Score=34.20  Aligned_cols=44  Identities=27%  Similarity=0.579  Sum_probs=31.9

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCCCcccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVC  183 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~tCP~C  183 (334)
                      ...|--|...+.+. ....-++|++.||.+|=.=--..-.+||-|
T Consensus        15 ~~~C~gC~~~l~~~-~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          15 ERFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CCEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCccCCCCcCCCC-ceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            56899999988644 445677899999999943222444579988

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.55  E-value=0.31  Score=33.98  Aligned_cols=44  Identities=25%  Similarity=0.650  Sum_probs=30.1

Q ss_pred             CCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcCC----Cccccccc
Q 039186          139 SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHN----TCPVCRAN  186 (334)
Q Consensus       139 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~~----tCP~CR~~  186 (334)
                      ...|.||...   ++.+ .--.|...||..|+.+.+....    .||.|+..
T Consensus         7 c~~C~~C~~~---~~ll-~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           7 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSCCSSSCSS---SCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCc---CEEE-ECCCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            4467777643   4444 4446999999999998874332    59999543

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=0.97  Score=31.79  Aligned_cols=37  Identities=27%  Similarity=0.560  Sum_probs=28.3

Q ss_pred             CCCcCccccccccCCcceEEcC-CCCCccchhHHHHHHh
Q 039186          138 GSLECAVCLNEFGDEETLRLIP-KCSHVFHMDCIDAWLS  175 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~Wl~  175 (334)
                      ....|.+|.+.+++..-+ ..| .=+|.||..|-...++
T Consensus         7 ~~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sik   44 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIK   44 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHH
T ss_pred             CceeeeeehhhhcCCceE-eCCCCcCCceeccccHHHHH
Confidence            457899999999876555 322 2359999999999885

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.14  E-value=0.16  Score=34.50  Aligned_cols=45  Identities=27%  Similarity=0.591  Sum_probs=30.9

Q ss_pred             CCCcCccccccccCCcceEEcCCCCCccchhHHHHHHhcC----CCccccccc
Q 039186          138 GSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAH----NTCPVCRAN  186 (334)
Q Consensus       138 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~Wl~~~----~tCP~CR~~  186 (334)
                      ....|.||.+.   ++.+ .--.|.-.||..|+...+...    -.||.|+..
T Consensus         8 ~~~~C~~C~~~---g~lv-~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           8 HMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CcCCCcCCCCC---CeEE-EeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            44579999853   4433 334588999999998766432    269999654