Citrus Sinensis ID: 039187

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLLHPSGADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRKK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccEEccccccHHEEEEEEHcHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLlgrhschlTRYFKLllhpsgadfsdiykrsdLYRRNKMLIEHLskqapgskdlyFLTQYSYFTQFMACLWKQWWsywqnpaytAVKFFFTTFTAVLLGSLswdlggrhdqksqDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFrlipgfmipgpripirwrwyywanPIAWTlygliaprlgmrrkk
Flexible Loop (DISEMBL)
ldaraasivirtvrntvdtgrtvvCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLllhpsgadfsdiYKRSDLYRRNKMLIEhlskqapgskdLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLygliaprlgmrrkk
Low Complexity Region (SEG)
LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLLHPSGADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKfffttftAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRKK
Disordered region (IsUnstruct)
******SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLLHPSGADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRL******
Disordered Region (DISOPRED)
LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLLHPSGADFSDIYKRSDLYRRNKM********************YSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMR***
Disordered Region (DISEMBL)
LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLLHPSGADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRKK
Disordered Region (DISPRO)
LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLLHPSGADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLLHPSGADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q76CU2	1434	Pleiotropic drug resistan	N/A	no	0.977	0.180	0.486	9e-87
Q949G3	1436	Pleiotropic drug resistan	N/A	no	0.977	0.180	0.461	6e-82
A2WSH0	1457	Pleiotropic drug resistan	N/A	no	0.977	0.177	0.466	4e-81
Q0JLC5	1457	Pleiotropic drug resistan	yes	no	0.977	0.177	0.466	4e-81
Q9M9E1	1423	ABC transporter G family	yes	no	0.977	0.182	0.452	4e-79
O24367	1441	Pleiotropic drug resistan	N/A	no	0.977	0.179	0.436	7e-77
Q8GU88	1444	Putative pleiotropic drug	no	no	0.977	0.179	0.436	1e-75
Q8GU89	1450	Pleiotropic drug resistan	no	no	0.977	0.178	0.433	1e-75
Q8GU92	1464	Probable pleiotropic drug	no	no	0.977	0.176	0.430	5e-75
Q7PC80	1468	Probable pleiotropic drug	no	no	0.977	0.176	0.425	2e-72

>sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1

 Score =  320 bits (819), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 175/360 (48%), Positives = 212/360 (58%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 1019 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1078

Query: 61   CHLTRYF---------KLLLHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
            CHL +YF         K   +P+               G DF+++YK SDLYRRNK LI 
Sbjct: 1079 CHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALIS 1138

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             L    PGSKDL+F TQY  S++TQ +ACLWKQ WSYW+NPAYTAV+F FTTF A++ G+
Sbjct: 1139 ELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGT 1198

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WDLG +   KSQDL NA GSM+ A+                                 
Sbjct: 1199 MFWDLGTKV-SKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSA 1257

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
            I  AF  + +E+P+IFVQS+ Y +IV AM+GF+    KFF                    
Sbjct: 1258 IPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMG 1317

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF+IP PR+P+ WRWYYWANP+AWTLYGL+A + G
Sbjct: 1318 VAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFG 1377

May be a general defense protein.
Nicotiana tabacum (taxid: 4097)

>sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1

 Score =  303 bits (777), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 166/360 (46%), Positives = 213/360 (59%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+R VRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGR S
Sbjct: 1020 LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQS 1079

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
            CHL +YF+ +          +P+               G DF+D+YK+SDLYRRNK LI+
Sbjct: 1080 CHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALID 1139

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS   PG+ DL+F +++S  ++TQ MACLWKQ WSYW+NPAYTAV+  FTTF A++ G+
Sbjct: 1140 ELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFGT 1199

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WD+G +   ++QDL NA GSM+ A+                                 
Sbjct: 1200 MFWDIGTKV-SRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSA 1258

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK---------------------- 219
            I  AF  +++E+P+IFVQ+ VY +IV +M+GF+ T +K                      
Sbjct: 1259 IPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMT 1318

Query: 220  ---------------FF----RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                           FF     L  GF++P PRIPI WRWYYW  PIAWTLYGL+A + G
Sbjct: 1319 VAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFG 1378

Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1

 Score =  301 bits (771), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/360 (46%), Positives = 208/360 (57%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTV+TGRTVVCTIHQPSI+IFEAFDELFLMK+G +EIY G LG HS
Sbjct: 1042 LDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHS 1101

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
              L +YF+ +          +P+               G DFSDIYK+S+LY+RNK LI+
Sbjct: 1102 SELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIK 1161

Query: 97   HLSKQAPGSKDLYFLTQYSY--FTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS+ AP S DLYF TQYS    TQ MACLWKQ  SYW+NP Y AV+FFFTT  A+L G+
Sbjct: 1162 DLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGT 1221

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------------------------------- 182
            + WDLGG+   KSQDLFNA GSM+ A++                                
Sbjct: 1222 IFWDLGGKV-TKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSA 1280

Query: 183  -SSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF  +++E+P+  VQ+ VY +IV AM+GF+ TA+KFF                    
Sbjct: 1281 FPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMA 1340

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF+IP PR+PI WRWY WA P+AWTLYGL+  + G
Sbjct: 1341 VGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFG 1400

May be a general defense protein.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1

 Score =  301 bits (771), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 168/360 (46%), Positives = 208/360 (57%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTV+TGRTVVCTIHQPSI+IFEAFDELFLMK+G +EIY G LG HS
Sbjct: 1042 LDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHS 1101

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
              L +YF+ +          +P+               G DFSDIYK+S+LY+RNK LI+
Sbjct: 1102 SELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIK 1161

Query: 97   HLSKQAPGSKDLYFLTQYSY--FTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS+ AP S DLYF TQYS    TQ MACLWKQ  SYW+NP Y AV+FFFTT  A+L G+
Sbjct: 1162 DLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGT 1221

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------------------------------- 182
            + WDLGG+   KSQDLFNA GSM+ A++                                
Sbjct: 1222 IFWDLGGKV-TKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSA 1280

Query: 183  -SSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF  +++E+P+  VQ+ VY +IV AM+GF+ TA+KFF                    
Sbjct: 1281 FPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMA 1340

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF+IP PR+PI WRWY WA P+AWTLYGL+  + G
Sbjct: 1341 VGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFG 1400

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1

 Score =  294 bits (753), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 163/360 (45%), Positives = 206/360 (57%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFL+K+G +EIYVG LG  S
Sbjct: 1007 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHES 1066

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
             HL  YF+ +          +P+               G DF+ +YK S+LY+RNK LI+
Sbjct: 1067 THLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIK 1126

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS+ APGSKDLYF TQY  S+ TQ MA LWKQ WSYW+NP YTAV+F FT   A++ G+
Sbjct: 1127 ELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGT 1186

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------------------------------- 182
            + WDLGG+   + QDL NA GSM+TA++                                
Sbjct: 1187 MFWDLGGKTKTR-QDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSA 1245

Query: 183  -SSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF  + +E+P++ VQ++VY +IV AM+GF+ TA KFF                    
Sbjct: 1246 MPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMA 1305

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF+IP P +P+ W WYYW  P+AWTLYGLIA + G
Sbjct: 1306 VAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFG 1365

May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol.

Arabidopsis thaliana (taxid: 3702)

>sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1

 Score =  286 bits (733), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 157/360 (43%), Positives = 205/360 (56%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+R VRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G +EIYVG LGR S
Sbjct: 1025 LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQS 1084

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
             HL +YF+ +          +P+               G +F+++Y+ SDLY+RNK LI+
Sbjct: 1085 SHLIKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIK 1144

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS   PGSKDL+F TQ+S  +  Q +ACLWKQ  SYW+NP+YTA + FFT   A++ G+
Sbjct: 1145 ELSTPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGT 1204

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------------------------------- 182
            + WDLG +    S DL NA GSM+ A++                                
Sbjct: 1205 IFWDLGKKR-STSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSA 1263

Query: 183  -SSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               A+  +++EVPHI VQ+L+Y ++V +M+GFD TA+KF                     
Sbjct: 1264 LPYAYAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMA 1323

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  +  GF+IP PRIPI WRWYYWA P+AWTLYGL+  + G
Sbjct: 1324 VAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFG 1383

May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol.

Spirodela polyrrhiza (taxid: 29656)

>sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1

 Score =  283 bits (723), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/360 (43%), Positives = 206/360 (57%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G +EIYVG LG +S
Sbjct: 1028 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNS 1087

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
            CHL  YF+ +          +P+               G +F+++Y+ SDLY+RNK LI 
Sbjct: 1088 CHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLIS 1147

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS   PGS DL+F TQ+S  +FTQ MACLWKQ  SYW+NP+YTA + FFTT  A++ G+
Sbjct: 1148 ELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGT 1207

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            +  +L G+   K  DLFN+ GSM+ A+                                 
Sbjct: 1208 IFLNL-GKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSA 1266

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK---------------------- 219
            +  AF  +++E+PHIF+Q++VY +IV +++GFD T  K                      
Sbjct: 1267 LPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMA 1326

Query: 220  -------------------FFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                + +  GF+IP PRIPI WRWY WA P+AWTLYGL+A + G
Sbjct: 1327 VAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYG 1386

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1

 Score =  282 bits (722), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/360 (43%), Positives = 206/360 (57%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTV+TGRTVVCTIHQPSI+IFEAFDELFLMK+G +EIYVG +G++S
Sbjct: 1034 LDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNS 1093

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
              L  YF+ +          +P+               G DFS+IY++S+LY+RNK LIE
Sbjct: 1094 SKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIE 1153

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS   PGS DL F TQYS  + TQ +ACLWKQ WSYW+NP+YTAV+  FT   A++ G+
Sbjct: 1154 ELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGT 1213

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------------------------------- 182
            + W+LG R  +K QDLFNA GSM+ A++                                
Sbjct: 1214 MFWNLGTR-TKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSA 1272

Query: 183  -SSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF  + +E+P+I VQ+L+Y V+V +M+GF+ T +KF                     
Sbjct: 1273 FPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMA 1332

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  G++IP P+IP+ WRWY W  P+AWTLYGL+A + G
Sbjct: 1333 VGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFG 1392

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1

 Score =  280 bits (717), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 155/360 (43%), Positives = 200/360 (55%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G +EIYVG LG  S
Sbjct: 1049 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQS 1108

Query: 61   CHLTRYFKLLLHPS------------------------GADFSDIYKRSDLYRRNKMLIE 96
              L +YF+ +   S                        G DF DIY++S+L++RNK LI+
Sbjct: 1109 SELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQ 1168

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS   PGS +LYF T+Y  S+  Q +ACLWK   SYW+NP Y A++ FFTT  A+L G+
Sbjct: 1169 ELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGT 1228

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------------------------------- 182
            + WDLGG+   KSQDLFNA GSM++A++                                
Sbjct: 1229 IFWDLGGKTG-KSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSA 1287

Query: 183  -SSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK---------------------- 219
               AF  + +E P+  VQS++Y +IV +M+GF  TA+K                      
Sbjct: 1288 FPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMA 1347

Query: 220  -------------------FFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                + L  GF+IP P++PI WRWY W  P+AWTLYGL+A + G
Sbjct: 1348 VGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFG 1407

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/360 (42%), Positives = 196/360 (54%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTV+TGRTVVCTIHQPSI+IFEAFDELFLMK+G +EIYVG LG HS
Sbjct: 1053 LDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHS 1112

Query: 61   CHLTRYFKLLLHPS------------------------GADFSDIYKRSDLYRRNKMLIE 96
              L +YF+ +   S                          DF DIY++S+L++RNK LI+
Sbjct: 1113 SELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQ 1172

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS   PGS +LYF TQYS  +  Q +ACLWKQ  SYW+NP Y A++ FFTT  A++ G+
Sbjct: 1173 ELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGT 1232

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WDLGG+  Q SQDLFNA GSM+ A+                                 
Sbjct: 1233 IFWDLGGKMGQ-SQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSA 1291

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK---------------------- 219
            +  AF  + +E P+  VQS++YS+IV +M+GF  T +K                      
Sbjct: 1292 LPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMA 1351

Query: 220  -------------------FFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                + L  GF+I  P  P+ WRWY W  P+AWTLYGLI  + G
Sbjct: 1352 VGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYG 1411

May be a general defense protein.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
357455075	1427	Pleiotropic drug resistance protein [Med	0.977	0.181	0.486	1e-85
357455071	1492	Pleiotropic drug resistance protein [Med	0.977	0.173	0.486	1e-85
41052474	1078	PDR-type ABC transporter 2 [Nicotiana ta	0.977	0.240	0.486	4e-85
75326590	1434	RecName: Full=Pleiotropic drug resistanc	0.977	0.180	0.486	5e-85
20522008	1434	pleiotropic drug resistance like protein	0.977	0.180	0.486	6e-85
356555825	1427	PREDICTED: pleiotropic drug resistance p	0.977	0.181	0.483	7e-85
357455077	1410	Pleiotropic drug resistance protein [Med	0.977	0.183	0.483	7e-85
255576883	1417	ATP-binding cassette transporter, putati	0.992	0.185	0.483	6e-84
297743343	1642	unnamed protein product [Vitis vinifera]	0.977	0.157	0.475	6e-83
359482648	1769	PREDICTED: pleiotropic drug resistance p	0.977	0.146	0.466	1e-82

>gi|357455075|ref|XP_003597818.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486866|gb|AES68069.1| Pleiotropic drug resistance protein [Medicago truncatula]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 175/360 (48%), Positives = 216/360 (60%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 1010 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1069

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
             HL +YF+ +          +P+               G DF+D+YK SDLYRRNK LI+
Sbjct: 1070 THLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELNLGVDFTDLYKNSDLYRRNKQLIQ 1129

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS  APGSKDL+F TQ+  S+  Q  ACLWKQ WSYW+NP YTAV+FFFTTF  ++ G+
Sbjct: 1130 ELSVPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIGLMFGT 1189

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII------SS------------------------ 184
            + WDLGG+H  + QDL NA GSM+TA++      SS                        
Sbjct: 1190 MFWDLGGKHSSR-QDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFYREKAAGMYSA 1248

Query: 185  ---AFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF+ I+VE+P++F Q+++Y VIV AM+GFD TA KF                     
Sbjct: 1249 LPYAFSQILVELPYVFAQAVIYGVIVYAMIGFDWTAEKFLWYLFFMYFTLLYFTFYGMMA 1308

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF++P P IPI WRWYYWA P+AWT+YGL+A + G
Sbjct: 1309 VAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPIWWRWYYWACPVAWTIYGLVASQFG 1368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455071|ref|XP_003597816.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486864|gb|AES68067.1| Pleiotropic drug resistance protein [Medicago truncatula]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 175/360 (48%), Positives = 216/360 (60%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 1075 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1134

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
             HL +YF+ +          +P+               G DF+D+YK SDLYRRNK LI+
Sbjct: 1135 THLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELNLGVDFTDLYKNSDLYRRNKQLIQ 1194

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             L   APGSKDL+F TQ+  S+  Q  ACLWKQ WSYW+NP YTAV+FFFTTF A++ G+
Sbjct: 1195 ELGVPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGT 1254

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII------SS------------------------ 184
            + WDLGG+H ++ QDL NA GSM+TA++      SS                        
Sbjct: 1255 MFWDLGGKHSRR-QDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFNREKAAGMYSA 1313

Query: 185  ---AFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF+ I+VE+P++F Q++ Y VIV AM+GFD TA KF                     
Sbjct: 1314 LPYAFSQILVELPYVFAQAVTYGVIVYAMIGFDWTAEKFLWYLFFMYFTLLYFTFYGMMA 1373

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF++P P IPI WRWYYWA P+AWT+YGL+A + G
Sbjct: 1374 VAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPIWWRWYYWACPVAWTIYGLVASQFG 1433

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41052474|dbj|BAD07484.1| PDR-type ABC transporter 2 [Nicotiana tabacum]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 175/360 (48%), Positives = 211/360 (58%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+R VRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 663  LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 722

Query: 61   CHLTRYF---------KLLLHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
            CHL +YF         K   +P+               G DF+D+YK SDLYRRNK LI 
Sbjct: 723  CHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGVDFTDVYKNSDLYRRNKALIS 782

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             L    PGSKDL+F TQY  S++TQ MACLWKQ WSYW+NPAYTAV+F FTTF A++ G+
Sbjct: 783  ELGVPRPGSKDLHFETQYSQSFWTQCMACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGT 842

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WDLG +   KSQDL NA GSM+ A+                                 
Sbjct: 843  MFWDLGTKV-SKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAVERTVFYRERAAGMYSA 901

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
            I  AF  + +E+P+IFVQS+ Y +IV AM+GF+    KFF                    
Sbjct: 902  IPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMS 961

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF++P PR+P+ WRWYYWANP+AWTLYGL+A + G
Sbjct: 962  VAVTPNQNVASIVAAFFYGVWNLFSGFIVPRPRMPVWWRWYYWANPVAWTLYGLVASQFG 1021

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75326590|sp|Q76CU2.1|PDR1_TOBAC RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1 gi|41052472|dbj|BAD07483.1| PDR-type ABC transporter 1 [Nicotiana tabacum]

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 175/360 (48%), Positives = 212/360 (58%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 1019 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1078

Query: 61   CHLTRYF---------KLLLHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
            CHL +YF         K   +P+               G DF+++YK SDLYRRNK LI 
Sbjct: 1079 CHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALIS 1138

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             L    PGSKDL+F TQY  S++TQ +ACLWKQ WSYW+NPAYTAV+F FTTF A++ G+
Sbjct: 1139 ELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGT 1198

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WDLG +   KSQDL NA GSM+ A+                                 
Sbjct: 1199 MFWDLGTKV-SKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSA 1257

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
            I  AF  + +E+P+IFVQS+ Y +IV AM+GF+    KFF                    
Sbjct: 1258 IPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMG 1317

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF+IP PR+P+ WRWYYWANP+AWTLYGL+A + G
Sbjct: 1318 VAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFG 1377

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20522008|dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicotiana tabacum]

 Score =  319 bits (818), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 175/360 (48%), Positives = 212/360 (58%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 1019 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1078

Query: 61   CHLTRYF---------KLLLHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
            CHL +YF         K   +P+               G DF+++YK SDLYRRNK LI 
Sbjct: 1079 CHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALIS 1138

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             L    PGSKDL+F TQY  S++TQ +ACLWKQ WSYW+NPAYTAV+F FTTF A++ G+
Sbjct: 1139 ELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGT 1198

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WDLG +   KSQDL NA GSM+ A+                                 
Sbjct: 1199 MFWDLGTKV-SKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSA 1257

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
            I  AF  + +E+P+IFVQS+ Y +IV AM+GF+    KFF                    
Sbjct: 1258 IPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMG 1317

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF+IP PR+P+ WRWYYWANP+AWTLYGL+A + G
Sbjct: 1318 VAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFG 1377

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 174/360 (48%), Positives = 213/360 (59%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 1010 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1069

Query: 61   CHLTRYFKLLLHPS------------------------GADFSDIYKRSDLYRRNKMLIE 96
             HL +YF+ +   S                        G DF+D+YK SDLYRRNK LI+
Sbjct: 1070 SHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDLYRRNKQLIQ 1129

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             L + APGSKDL+F TQY  S+  Q  ACLWKQ WSYW+NP YTAV+FFFTTF A++ G+
Sbjct: 1130 ELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIALMFGT 1189

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------SS----------------------- 184
            + WDLGG+H  +  DL NA GSM+TA++       SS                       
Sbjct: 1190 IFWDLGGKHSTRG-DLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYREKAAGMYSA 1248

Query: 185  ---AFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF  I+VE+P++FVQ++ Y VIV AM+GF+ TA KFF                    
Sbjct: 1249 LPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLYYTFYGMMT 1308

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF++  P IP+ WRWYYWA P+AWT+YGL+A + G
Sbjct: 1309 VGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIYGLVASQFG 1368

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455077|ref|XP_003597819.1| Pleiotropic drug resistance protein [Medicago truncatula] gi|355486867|gb|AES68070.1| Pleiotropic drug resistance protein [Medicago truncatula]

 Score =  319 bits (818), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 174/360 (48%), Positives = 214/360 (59%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFLMK+G QEIYVG LGRHS
Sbjct: 993  LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHS 1052

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
             HL +YF+ +          +P+               G DF+D+YK SDLYRRNK LI+
Sbjct: 1053 THLIKYFESIDGVSKIKDGYNPATWMLEVTTTAQELNLGVDFTDLYKNSDLYRRNKQLIQ 1112

Query: 97   HLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS  APGSKDL+F TQ+  S+  Q  ACLWKQ WSYW+NP YTAV+FFFTTF  ++ G+
Sbjct: 1113 ELSVPAPGSKDLHFPTQFSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFTTFIGLMFGT 1172

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII------SS------------------------ 184
            + WDLGG+H  + QDL NA GSM+TA++      SS                        
Sbjct: 1173 MFWDLGGKHSSR-QDLLNAVGSMYTAVLFLGVQNSSSVQPVVAVERTVFYREKAAGMYSA 1231

Query: 185  ---AFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF+ I+VE+P++F Q++ Y  IV AM+GFD TA KF                     
Sbjct: 1232 LPYAFSQILVELPYVFAQAVTYGAIVYAMIGFDWTAEKFLWYLFFMYFTLLYFTFYGMMA 1291

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF++P P IPI WRWYYWA P+AWT+YGL+A + G
Sbjct: 1292 VAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPSIPIWWRWYYWACPVAWTIYGLVASQFG 1351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576883|ref|XP_002529327.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223531198|gb|EEF33044.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 219/364 (60%), Gaps = 101/364 (27%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDELFL+K+G +EIYVG LGRHS
Sbjct: 1002 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGRHS 1061

Query: 61   CHLTRYFK-----------------LLLHPSGA-------DFSDIYKRSDLYRRNKMLIE 96
            CHL +YF+                 +L   S A       DF++IYK S+LYRRNK LI+
Sbjct: 1062 CHLIKYFEGIEGVRKIKDGFNPATWMLEITSAAQEIALDVDFANIYKTSELYRRNKALIK 1121

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
            +LSK APGSKDLYF +QYS  +F QF+ CLWKQ  SYW+NP YTAV+F FTTF A++ G+
Sbjct: 1122 NLSKPAPGSKDLYFPSQYSLSFFGQFLTCLWKQQLSYWRNPPYTAVRFLFTTFIALIFGT 1181

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAII-------SS----------------------- 184
            + WDLG +  +K QDLFNA GSM+ +++       SS                       
Sbjct: 1182 MFWDLGSKI-EKQQDLFNAMGSMYASVLFLGIQNASSVQPVVSVERTVFYRERAAGMYSA 1240

Query: 185  ---AFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
               AF  I++E+P+IF Q+ VY VIV AM+GF+ TASKFF                    
Sbjct: 1241 LPYAFGQIVIELPYIFTQAAVYGVIVYAMIGFEWTASKFFWYLFFKYFTLLYFTFYGMMT 1300

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF+IP PR P+ WRWY W  P+AWTLYGL+A + G
Sbjct: 1301 VAVSPNHQIASIIASAFYAIWNLFSGFVIPRPRTPVWWRWYCWICPVAWTLYGLVASQFG 1360

Query: 261  MRRK 264
             R++
Sbjct: 1361 DRKE 1364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 171/360 (47%), Positives = 208/360 (57%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDEL LMK+G QEIYVG LGRHS
Sbjct: 1226 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHS 1285

Query: 61   CHLTRYFKLLLHPS------------------------GADFSDIYKRSDLYRRNKMLIE 96
             HL  YF+ +   S                        G DF++IYK SDLYRRNK LI+
Sbjct: 1286 SHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIK 1345

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS+ APG+KDLYF TQYS  +FTQF+ACLWKQ WSYW+NP YTAV+F FTTF A++ G 
Sbjct: 1346 ELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGL 1405

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WDLG R   + QDL NA GSM+ A+                                 
Sbjct: 1406 IFWDLGTRR-TRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVERTVFYRERAAGMYSA 1464

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF-------------------- 221
            +  AF   +VE+P++F Q++VY VIV  M+GF+ TA+KFF                    
Sbjct: 1465 LPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFMFCTLLYFTFYGMMA 1524

Query: 222  ---------------------RLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                  L  GF++P  RIP+ WRWY W  P+AWTLYGL+A + G
Sbjct: 1525 VAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICPVAWTLYGLVASQFG 1584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482648|ref|XP_003632800.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/360 (46%), Positives = 208/360 (57%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDEL LMK+G QEIYVG LGRHS
Sbjct: 1353 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGTLGRHS 1412

Query: 61   CHLTRYFKLLLHPS------------------------GADFSDIYKRSDLYRRNKMLIE 96
             HL  YF+ +   S                        G DF++IYK SDLYRRNK LI+
Sbjct: 1413 SHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEIYKNSDLYRRNKDLIK 1472

Query: 97   HLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS+ APG+KDLYF TQYS  +FTQF+ACLWKQ WSYW+NP YTAV+F FTTF A++ G+
Sbjct: 1473 ELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTAVRFLFTTFIALMFGT 1532

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAI--------------------------------- 181
            + WDLG     + QDL NA GSM+ A+                                 
Sbjct: 1533 MFWDLGTER-TRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVVVVERTVFYRERAAGMYSA 1591

Query: 182  ISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK---------------------- 219
            +  AF  + +E+P++F Q++VY VIV AM+GF+ TA+K                      
Sbjct: 1592 LPYAFGQVTIEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMA 1651

Query: 220  -------------------FFRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                + L  GF++P  RIP+ WRWYYW  P+AWTLYGL+  + G
Sbjct: 1652 VAATPNQNIASIVAATFYTLWNLFSGFIVPRNRIPVWWRWYYWICPVAWTLYGLVTSQFG 1711

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2196593	1423	ABCG40 "ATP-binding cassette G	0.483	0.089	0.503	1.7e-68
TAIR|locus:2019693	1454	ABCG39 "ATP-binding cassette G	0.471	0.085	0.423	7.3e-62
TAIR|locus:2039523	1420	ABCG32 "ATP-binding cassette G	0.490	0.091	0.413	2.4e-60
TAIR|locus:2044893	1453	ABCG34 "ATP-binding cassette G	0.264	0.048	0.742	5e-59
TAIR|locus:2037703	1442	ABCG35 "ATP-binding cassette G	0.483	0.088	0.381	5.2e-58
TAIR|locus:2025931	1469	PEN3 "PENETRATION 3" [Arabidop	0.475	0.085	0.379	3.1e-57
TAIR|locus:2045683	1426	ABCG31 "ATP-binding cassette G	0.256	0.047	0.779	1.3e-55
TAIR|locus:2094952	1416	ABCG29 "ATP-binding cassette G	0.264	0.049	0.714	1.7e-55
TAIR|locus:2084081	1450	ABCG37 "ATP-binding cassette G	0.256	0.046	0.676	5.4e-49
TAIR|locus:2049867	1413	ABCG33 "ATP-binding cassette G	0.301	0.056	0.585	2.1e-44

TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 1.7e-68, Sum P(3) = 1.7e-68
 Identities = 66/131 (50%), Positives = 87/131 (66%)

Query:    75 GADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYW 132
             G DF+ +YK S+LY+RNK LI+ LS+ APGSKDLYF TQYS  + TQ MA LWKQ WSYW
Sbjct:  1105 GVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYW 1164

Query:   133 QNPAYTAVKXXXXXXXAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVE 192
             +NP YTAV+       A++ G++ WDLGG+   + QDL NA GSM+TA++          
Sbjct:  1165 RNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTR-QDLSNAMGSMYTAVLFLGLQNAASV 1223

Query:   193 VPHIFVQSLVY 203
              P + V+  V+
Sbjct:  1224 QPVVNVERTVF 1234

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015692 "lead ion transport" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=RCA;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=TAS

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA;TAS

GO:0010193 "response to ozone" evidence=IEP

GO:0046865 "terpenoid transport" evidence=IDA

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.3e-62, Sum P(3) = 7.3e-62
 Identities = 55/130 (42%), Positives = 80/130 (61%)

Query:    77 DFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQN 134
             DF+ I+  S LYRRN+ LI+ LS   PGSKD+YF T+Y  S+ TQ  AC WKQ+WSYW++
Sbjct:  1135 DFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRH 1194

Query:   135 PAYTAVKXXXXXXXAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-SAFNTIMVEV 193
             P Y A++        VL G + W +G + + + QDL N  G+M+ A++   A N   V+ 
Sbjct:  1195 PQYNAIRFLMTVVIGVLFGLIFWQIGTKTENE-QDLNNFFGAMYAAVLFLGALNAATVQ- 1252

Query:   194 PHIFVQSLVY 203
             P I ++  V+
Sbjct:  1253 PAIAIERTVF 1262

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS;IMP

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.4e-60, Sum P(3) = 2.4e-60
 Identities = 55/133 (41%), Positives = 83/133 (62%)

Query:    72 HPSGADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSY--FTQFMACLWKQWW 129
             H  G DF++IY+ S+L +RNK LIE LSK +  +K++ F T+YS   ++QF+ACLWKQ  
Sbjct:  1095 HRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNL 1154

Query:   130 SYWQNPAYTAVKXXXXXXXAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTI 189
             SYW+NP YTAV+       +++LG++ W  G + D + Q LFNA GSM+ A++       
Sbjct:  1155 SYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQ-LFNAMGSMYAAVLFIGITNA 1213

Query:   190 MVEVPHIFVQSLV 202
                 P + ++  V
Sbjct:  1214 TAAQPVVSIERFV 1226

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0042335 "cuticle development" evidence=IMP

TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 5.0e-59, Sum P(3) = 5.0e-59
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query:     1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
             LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFE+FDEL LMK+G Q IY G LG HS
Sbjct:  1034 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHS 1093

Query:    61 CHLTRYFKLL 70
               L  YF+ +
Sbjct:  1094 QKLVEYFEAI 1103

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 5.2e-58, Sum P(3) = 5.2e-58
 Identities = 50/131 (38%), Positives = 78/131 (59%)

Query:    75 GADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFT--QFMACLWKQWWSYW 132
             G DF+++YK S L +RNK L++ LS    G+ DLYF TQ+S  T  QF +CLWKQWW+YW
Sbjct:  1120 GVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLWKQWWTYW 1179

Query:   133 QNPAYTAVKXXXXXXXAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVE 192
             ++P Y  V+       ++++GS+ W +GG+     QDL    G+++ A++    N     
Sbjct:  1180 RSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNV-QDLTMVIGAIYAAVVFVGINNCSTV 1238

Query:   193 VPHIFVQSLVY 203
              P + V+  V+
Sbjct:  1239 QPMVAVERTVF 1249

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 3.1e-57, Sum P(3) = 3.1e-57
 Identities = 49/129 (37%), Positives = 76/129 (58%)

Query:    77 DFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYSYFT--QFMACLWKQWWSYWQN 134
             DF+++Y +S L++RNK L++ LS    G+ DLYF TQ+S  T  QF +CLWKQWW+YW++
Sbjct:  1149 DFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRS 1208

Query:   135 PAYTAVKXXXXXXXAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNTIMVEVP 194
             P Y  V+       ++L+G++ W +GG       DL    G+++ AII    N      P
Sbjct:  1209 PDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAG-DLTMVIGALYAAIIFVGINNCSTVQP 1267

Query:   195 HIFVQSLVY 203
              + V+  V+
Sbjct:  1268 MVAVERTVF 1276

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA;IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0031348 "negative regulation of defense response" evidence=RCA;IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0015691 "cadmium ion transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0042344 "indole glucosinolate catabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 1.3e-55, Sum P(4) = 1.3e-55
 Identities = 53/68 (77%), Positives = 58/68 (85%)

Query:     1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
             LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDEL LMK+G Q IY G LG HS
Sbjct:  1008 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHS 1067

Query:    61 CHLTRYFK 68
               L  YF+
Sbjct:  1068 QVLVDYFQ 1075

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
 Identities = 50/70 (71%), Positives = 60/70 (85%)

Query:     1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
             LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDEL L+K+G Q IY G LG++S
Sbjct:   996 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNS 1055

Query:    61 CHLTRYFKLL 70
               +  YF+ +
Sbjct:  1056 HKIIEYFQAI 1065

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015850 "organic hydroxy compound transport" evidence=IDA

GO:1901140 "p-coumaryl alcohol transport" evidence=IDA

GO:1901141 "regulation of lignin biosynthetic process" evidence=IMP

TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 5.4e-49, Sum P(4) = 5.4e-49
 Identities = 46/68 (67%), Positives = 57/68 (83%)

Query:     1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
             LDARAA+IV+R V+N  DTGRT+VCTIHQPSI+IFEAFDEL L+K+G + IY G LG+HS
Sbjct:  1032 LDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHS 1091

Query:    61 CHLTRYFK 68
              H+  YF+
Sbjct:  1092 RHIIEYFE 1099

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0009926 "auxin polar transport" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.1e-44, Sum P(3) = 2.1e-44
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query:     1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
             LDARAA+IV+R V+N  +TGRT+VCTIHQPSI IFEAFDEL L+K+G + IY G LG+HS
Sbjct:   995 LDARAAAIVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHS 1054

Query:    61 CHLTRYFKLLLHPSGADFSDIY 82
               +  YF+ +  P  A   D Y
Sbjct:  1055 SCVIEYFQNI--PGVAKIRDKY 1074

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	3e-91
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-49
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	3e-22
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	3e-21
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-15
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	4e-15
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	5e-10
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-08
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-05
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	7e-05
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	1e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	6e-04
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	0.003

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  294 bits (753), Expect = 3e-91
 Identities = 142/360 (39%), Positives = 191/360 (53%), Gaps = 101/360 (28%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LDARAA+IV+RTVRNTVDTGRTVVCTIHQPSI+IFEAFDEL LMK+G Q IY G LGR+S
Sbjct: 1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNS 1109

Query: 61   CHLTRYFKLL---------LHPS---------------GADFSDIYKRSDLYRRNKMLIE 96
              +  YF+ +          +P+               G DF++ YK S LY+RNK L++
Sbjct: 1110 HKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVK 1169

Query: 97   HLSKQAPGSKDLYFLTQYSYFT--QFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGS 154
             LS   PG+ DLYF TQYS  T  QF +CLWKQWW+YW++P Y  V+FFFT   A+++G+
Sbjct: 1170 ELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGT 1229

Query: 155  LSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNT-------------------------- 188
            + W +G +    + DL    G+M+ A++    N                           
Sbjct: 1230 IFWKVGTKRSN-ANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSA 1288

Query: 189  -------IMVEVPHIFVQSLVYSVIVDAMMGFDRTASKF--------------------- 220
                   ++ E+P++ +Q+  Y++IV AM+ F+ TA+KF                     
Sbjct: 1289 LPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMT 1348

Query: 221  --------------------FRLIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG 260
                                F L  GF IP P+IP  W WYYW  P+AWT+YGLI  + G
Sbjct: 1349 VSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYG 1408

Length = 1470

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  174 bits (442), Expect = 2e-49
 Identities = 79/369 (21%), Positives = 131/369 (35%), Gaps = 113/369 (30%)

Query: 1    LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
            LD++ A  + + +R   D G+ ++CTIHQPS  +FE FD L L+++G Q +Y G LG +S
Sbjct: 933  LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENS 992

Query: 61   CHLTRYFKL---------------LLHPSGA--------DFSDIYKRSDLYRRNKMLIEH 97
              +  YF+                +L   GA        D+ ++++ S  Y+  K  ++ 
Sbjct: 993  HTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDR 1052

Query: 98   LSKQAPGSKDLYFLTQY-----SYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLL 152
            L  +   ++D            S + QF   LW+ +  YW+ P Y   KFF T F A+ +
Sbjct: 1053 LEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFI 1112

Query: 153  GSLSWDLGGRHDQKSQDLFNATGSMFTAIISS---------------------------- 184
            G   + +G       Q L N   ++F A +                              
Sbjct: 1113 GFTFFKVG----TSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTF 1168

Query: 185  -----AFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK-------------------- 219
                     I VE+P+  V   ++  I    +GF   ASK                    
Sbjct: 1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFL 1228

Query: 220  ----------------------------FFRLIPGFMIPGPRIPIRWRWYYWANPIAWTL 251
                                              G + P  R+P  W + Y  +P  + +
Sbjct: 1229 YFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLV 1288

Query: 252  YGLIAPRLG 260
              L++  L 
Sbjct: 1289 QALLSTGLA 1297

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 90.8 bits (226), Expect = 3e-22
 Identities = 25/54 (46%), Positives = 39/54 (72%)

Query: 1   LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG 54
           LD++AA  ++R ++   D+G+ ++CTIHQPS  IFE FD L L+K+G + +Y G
Sbjct: 139 LDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 92.4 bits (230), Expect = 3e-21
 Identities = 70/286 (24%), Positives = 110/286 (38%), Gaps = 74/286 (25%)

Query: 1   LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHS 60
           LD+  A  V++ ++     G+T++CTIHQPS E+FE FD++ LM +GR    V  LG   
Sbjct: 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGR----VAYLGSPD 252

Query: 61  CHLTRYFKLLLHP-----SGADFS----------------------DIYKRSDLYRRNKM 93
                +F  L HP     + ADF                       D +  SD+ R   +
Sbjct: 253 -QAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLV 311

Query: 94  LIEHLSKQAPG-SKDL----YFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFT 148
                S +A G  KD           S++TQF A L + W S  ++P    V+   T  T
Sbjct: 312 NTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMT 371

Query: 149 AVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFNT-------------------- 188
           A+L+G +    G    QK   + N  G++F  + +  F                      
Sbjct: 372 AILIGLIYL--GQGLTQKG--VQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETR 427

Query: 189 -------------IMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF 221
                         + E+P   +   +++ I   M+G    A+ F 
Sbjct: 428 SGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFL 473

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 1   LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG 54
           LD+ +A  V+  +R   DTGRT++C+IHQPS EIFE FD+L L+ QGR  IY G
Sbjct: 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV-IYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 73/375 (19%), Positives = 134/375 (35%), Gaps = 124/375 (33%)

Query: 1   LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGR- 58
           LD+  A   IR ++ + +    T +  I+Q S + +E FD++ ++ +G Q IY G   + 
Sbjct: 240 LDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQ-IYFGPADKA 298

Query: 59  --------HSCH--------LTRY-----------FKLLLHPSGADFSDIYKRSDLY--- 88
                     C         LT             ++  +  +  +F   ++ S  Y   
Sbjct: 299 KQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQL 358

Query: 89  ------------RRNKMLIEHLSKQAPGSKDLYFLTQY--SYFTQFMACLWKQWWSYWQN 134
                         +       S  A  SK     + Y  S+  Q   CL + +     N
Sbjct: 359 MKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418

Query: 135 PAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIISSAFN------- 187
           P++T    F     A++L S+ ++L     + + D ++  G++F AI+ +AF+       
Sbjct: 419 PSFTLFMVFGNIIMALILSSVFYNL----PKNTSDFYSRGGALFFAILFNAFSSLLEIAS 474

Query: 188 -------------------------TIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKF-- 220
                                    +I+ E+P   ++S+V+++I+  M+ F RTA +F  
Sbjct: 475 MYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFF 534

Query: 221 ---------------FRLI------------------------PGFMIPGPRIPIRWRWY 241
                          FR I                         GF IP P +    +W 
Sbjct: 535 YLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWI 594

Query: 242 YWANPIAWTLYGLIA 256
           Y+ NP+A+    L+ 
Sbjct: 595 YYVNPLAYAFESLMV 609

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 82/214 (38%)

Query: 118 TQFMACLWKQWWSYWQNPAYT-AVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGS 176
           TQ  A L +++   W++P+     +       A++ G++  +L       S    N  G 
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD-----TSLGGLNRPGL 55

Query: 177 MFTAIISSAFNT---------------------------------IMVEVPHIFVQSLVY 203
           +F +I+ +AF++                                 I+VE+P   +Q++++
Sbjct: 56  LFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIF 115

Query: 204 SVIVDAMMGFDRTASKFFRLIP-------------------------------------- 225
            +IV  M+G     S+FF  +                                       
Sbjct: 116 LLIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLL 173

Query: 226 ---GFMIPGPRIPIRWRWYYWANPIAWTLYGLIA 256
              GF IP   +P   +W Y+ NP+ + +  L A
Sbjct: 174 LLSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRA 207

Length = 210

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 1   LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG 54
           LD+  A  ++ T+       R V+ TIHQP  ++F  FD + L+  G   +Y G
Sbjct: 174 LDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 17/48 (35%), Positives = 32/48 (66%)

Query: 1   LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGR 48
           LDA AA  ++ T+ +    G+T+V ++HQPS  +++ FD + ++ +GR
Sbjct: 237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGR 284

Length = 659

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 1   LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGR 48
           LD  +   ++  +R   + GRTV+   H P      A D + ++K G+
Sbjct: 111 LDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 1   LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG 54
           LD+  A  +++ +R   D    T   +++Q S EI++ FD++ ++ +GRQ IY G
Sbjct: 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ-IYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 46/117 (39%)

Query: 188 TIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR------------------------- 222
           T ++ +P   ++S+V+ VI    +GF   AS+FF+                         
Sbjct: 617 TFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRT 676

Query: 223 ----------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGL-----IAPR 258
                           L+ GF++P   IP  W W YW +P+++    L      APR
Sbjct: 677 MIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPR 733

Length = 1470

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 1   LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG 54
           LD  +   +   +R     G   +        E  E  D + ++  G+  I  G
Sbjct: 167 LDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI-IAEG 219

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.58
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	98.96
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	98.85
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	98.78
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	98.77
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.51
PRK15066	257	inner membrane transport permease; Provisional	98.51
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.47
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	98.4
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.32
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.15
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.12
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.11
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.11
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.07
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.06
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.02
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.01
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	97.99
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.99
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	97.97
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.95
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.94
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.94
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.91
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.91
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.91
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.91
COG1127	263	Ttg2A ABC-type transport system involved in resist	97.9
TIGR01248	152	drrC daunorubicin resistance protein C. The model	97.89
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.89
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.88
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	97.88
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	97.87
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	97.87
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	97.86
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.85
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.85
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.85
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.84
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.84
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	97.84
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.84
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.83
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	97.82
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	97.81
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.81
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	97.8
COG4559	259	ABC-type hemin transport system, ATPase component	97.8
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	97.79
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.79
COG1123	539	ATPase components of various ABC-type transport sy	97.78
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	97.77
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.77
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.77
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.77
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	97.77
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	97.77
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.77
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	97.77
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	97.77
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.77
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.76
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.76
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.76
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.76
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	97.76
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	97.75
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	97.75
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.75
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.75
PRK03695	248	vitamin B12-transporter ATPase; Provisional	97.75
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.74
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	97.74
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	97.74
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.73
cd03299	235	ABC_ModC_like Archeal protein closely related to M	97.73
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	97.73
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	97.73
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	97.73
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	97.73
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	97.72
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.72
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	97.72
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	97.7
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.7
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	97.69
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	97.69
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.68
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.68
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.68
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	97.67
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.67
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	97.67
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.66
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	97.66
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	97.66
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.65
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.65
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	97.65
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.65
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.65
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.64
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.64
COG4586	325	ABC-type uncharacterized transport system, ATPase	97.64
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	97.64
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.64
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	97.64
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	97.64
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	97.63
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.63
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.63
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.63
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	97.63
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.63
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.62
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.62
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	97.62
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	97.62
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.61
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.61
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.61
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.61
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.61
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	97.6
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.6
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.6
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.6
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.6
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.59
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.59
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	97.59
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	97.58
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	97.58
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	97.57
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	97.57
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.57
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.56
PRK13546	264	teichoic acids export protein ATP-binding subunit;	97.56
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.56
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	97.55
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.55
PRK10535	648	macrolide transporter ATP-binding /permease protei	97.54
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.53
PRK10938	490	putative molybdenum transport ATP-binding protein	97.53
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.52
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.51
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.5
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	97.5
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	97.49
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	97.49
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.49
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	97.49
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.49
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.48
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	97.48
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.48
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.48
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.47
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.47
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.46
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.46
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	97.46
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	97.45
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.45
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.44
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.44
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	97.44
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	97.43
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	97.43
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.43
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.43
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.42
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.42
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	97.41
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.41
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.4
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	97.4
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.4
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.39
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	97.39
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	97.38
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	97.37
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.36
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.36
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.36
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.36
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	97.35
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.34
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.34
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.33
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.33
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.32
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.32
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.31
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.3
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	97.29
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.29
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.29
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.26
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	97.23
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.22
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	97.21
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.21
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.21
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.21
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.2
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.2
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.18
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	97.17
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.17
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	97.15
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.14
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.12
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.1
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.09
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.08
COG4987	573	CydC ABC-type transport system involved in cytochr	97.06
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.06
COG1123	539	ATPase components of various ABC-type transport sy	97.05
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.05
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.04
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	97.01
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.01
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	96.99
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	96.98
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	96.93
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	96.93
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	96.91
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	96.88
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	96.87
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	96.87
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	96.86
PRK00635	1809	excinuclease ABC subunit A; Provisional	96.85
COG4988	559	CydD ABC-type transport system involved in cytochr	96.79
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	96.77
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	96.73
COG4598	256	HisP ABC-type histidine transport system, ATPase c	96.64
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.63
COG0842	286	ABC-type multidrug transport system, permease comp	96.61
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	96.53
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	96.5
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	96.44
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.42
PLN03232	1495	ABC transporter C family member; Provisional	96.42
PLN03130	1622	ABC transporter C family member; Provisional	96.36
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.36
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	96.3
PTZ00243	1560	ABC transporter; Provisional	96.25
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.22
COG4172	534	ABC-type uncharacterized transport system, duplica	96.2
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.18
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	96.15
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	96.14
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.14
COG3845	501	ABC-type uncharacterized transport systems, ATPase	96.12
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	96.12
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.06
PRK10522	547	multidrug transporter membrane component/ATP-bindi	96.01
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	96.01
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	96.0
PLN03232	1495	ABC transporter C family member; Provisional	95.92
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.91
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	95.88
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	95.84
PRK00635	1809	excinuclease ABC subunit A; Provisional	95.79
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	95.72
PLN03130	1622	ABC transporter C family member; Provisional	95.69
COG4172	534	ABC-type uncharacterized transport system, duplica	95.67
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.65
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	95.65
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	95.62
PRK13409	590	putative ATPase RIL; Provisional	95.6
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	95.56
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	95.53
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	95.42
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	95.4
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	95.35
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	95.33
PTZ00243	1560	ABC transporter; Provisional	95.28
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	95.21
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	95.15
PLN03073	718	ABC transporter F family; Provisional	95.1
COG3845	501	ABC-type uncharacterized transport systems, ATPase	95.06
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	94.87
COG0410	237	LivF ABC-type branched-chain amino acid transport	94.83
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	94.71
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	94.7
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	94.66
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	94.61
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.61
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	94.53
KOG0054	1381	consensus Multidrug resistance-associated protein/	94.52
PRK15176	264	Vi polysaccharide export inner membrane protein Ve	94.43
PRK11147	635	ABC transporter ATPase component; Reviewed	94.3
PRK13409	590	putative ATPase RIL; Provisional	94.11
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	94.05
PLN03073	718	ABC transporter F family; Provisional	94.03
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	93.69
KOG0054	1381	consensus Multidrug resistance-associated protein/	93.59
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	93.37
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	93.18
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.16
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	92.26
COG4525	259	TauB ABC-type taurine transport system, ATPase com	92.05
PRK11147	635	ABC transporter ATPase component; Reviewed	91.68
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	91.54
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	91.35
PRK10869	553	recombination and repair protein; Provisional	91.33
COG4587	268	ABC-type uncharacterized transport system, permeas	89.32
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	89.15
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	89.04
COG4674	249	Uncharacterized ABC-type transport system, ATPase	86.4
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	86.28
COG3910	233	Predicted ATPase [General function prediction only	83.37
PRK13830	818	conjugal transfer protein TrbE; Provisional	81.53
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	81.04

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=7.3e-53  Score=405.59  Aligned_cols=260  Identities=44%  Similarity=0.825  Sum_probs=245.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--------C
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--------H   72 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--------~   72 (265)
                      |||.+|..+|+.||+++++||||+|||||||.++|+.||++++|++||+++|+||.|++|+.+++||++.|        |
T Consensus       961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen  961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998        5


Q ss_pred             CC---------------CcchHHHhhcCHHHHHHHHHHHHHhccCCC-CCCccccCCcc--hHHHHHHHHHHHHHHhhcC
Q 039187           73 PS---------------GADFSDIYKRSDLYRRNKMLIEHLSKQAPG-SKDLYFLTQYS--YFTQFMACLWKQWWSYWQN  134 (265)
Q Consensus        73 P~---------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~Q~~~L~~R~~~~~~R~  134 (265)
                      |+               +.|+++.|++|++++++.+.++++.++.+. ..+...+.+|+  +|.|++.+++|++...||+
T Consensus      1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRs 1120 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRS 1120 (1391)
T ss_pred             hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence            52               358899999999999999999999988887 66667777787  9999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------------------------
Q 039187          135 PAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------------------------  183 (265)
Q Consensus       135 ~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------------------------  183 (265)
                      |.+++.|+++.++.|+++|+.||+++.    ++.++++.+|++|+++++                               
T Consensus      1121 p~y~~ar~~~~i~~gl~iGf~F~~~g~----~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~ 1196 (1391)
T KOG0065|consen 1121 PDYLMARFALTIVAGLFIGFTFWKVGH----NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSW 1196 (1391)
T ss_pred             cHHHHHHHHHHHHHHHhheeeeeecCC----cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccH
Confidence            999999999999999999999999996    788999999999999987                               


Q ss_pred             --HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------------------------
Q 039187          184 --SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR---------------------------------------  222 (265)
Q Consensus       184 --y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~---------------------------------------  222 (265)
                        |++|..++|+|+.++++++|.+++|+++|+..+++.+++                                       
T Consensus      1197 ~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~ 1276 (1391)
T KOG0065|consen 1197 TPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSF 1276 (1391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence              999999999999999999999999999999999886544                                       


Q ss_pred             --eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCCC
Q 039187          223 --LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRK  264 (265)
Q Consensus       223 --l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~~  264 (265)
                        +|||+++|.+.||+||.|++|+||+.|.+++++..++++.+.
T Consensus      1277 ~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v 1320 (1391)
T KOG0065|consen 1277 WNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEV 1320 (1391)
T ss_pred             HHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCce
Confidence              999999999999999999999999999999999999998763

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=4.4e-46  Score=375.99  Aligned_cols=263  Identities=53%  Similarity=1.036  Sum_probs=231.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC-C--------
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL-L--------   71 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~-g--------   71 (265)
                      ||+.++.++++.|+++++.|+|||+++|||+.++++.||++++|++||+++|+||++.+++++++||+++ |        
T Consensus      1050 LD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~ 1129 (1470)
T PLN03140       1050 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKY 1129 (1470)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCC
Confidence            8999999999999999999999999999999999999999999998799999999988889999999997 4        


Q ss_pred             CCCC---------------cchHHHhhcCHHHHHHHHHHHHHhccCCCCCCccccCCcc--hHHHHHHHHHHHHHHhhcC
Q 039187           72 HPSG---------------ADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYS--YFTQFMACLWKQWWSYWQN  134 (265)
Q Consensus        72 ~P~~---------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Q~~~L~~R~~~~~~R~  134 (265)
                      ||++               .|+++.|++|+++++..+.+++...+.+...+...+.+++  ++.|++.|++|+++..|||
T Consensus      1130 NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~ 1209 (1470)
T PLN03140       1130 NPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRS 1209 (1470)
T ss_pred             CchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCC
Confidence            4421               2678889999988888777776655443333322334454  9999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------------------------
Q 039187          135 PAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------------------------  183 (265)
Q Consensus       135 ~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------------------------  183 (265)
                      |.+..+++++.+++|+++|++|++++++.. ++.+++++.|++|+.+++                               
T Consensus      1210 p~~~~~r~~~~i~~al~~G~~f~~~~~~~~-~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~ 1288 (1470)
T PLN03140       1210 PDYNLVRFFFTLAAALMVGTIFWKVGTKRS-NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSA 1288 (1470)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhhCCCCCcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCH
Confidence            999999999999999999999999998654 457888888888766654                               


Q ss_pred             --HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------------------------
Q 039187          184 --SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR---------------------------------------  222 (265)
Q Consensus       184 --y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~---------------------------------------  222 (265)
                        |++|++++|+|+.++++++|.+++|||+|++.+++.|++                                       
T Consensus      1289 ~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~ 1368 (1470)
T PLN03140       1289 LPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGL 1368 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence              999999999999999999999999999999988887654                                       


Q ss_pred             --eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCCC
Q 039187          223 --LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRRK  264 (265)
Q Consensus       223 --l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~~  264 (265)
                        +|+||++|.++||+||+|++|+||++|++++++.|||+|.++
T Consensus      1369 ~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~ 1412 (1470)
T PLN03140       1369 FNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVED 1412 (1470)
T ss_pred             HHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCC
Confidence              999999999999999999999999999999999999998753

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.7e-45  Score=341.11  Aligned_cols=252  Identities=28%  Similarity=0.446  Sum_probs=210.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcch
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGADF   78 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~~   78 (265)
                      |||.+|.++++.||++|++|+|||+|||||++++|++||++++|++ |+++|+|++    +++.+||+++|  ||...|.
T Consensus       201 LDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~----~~~~~ff~~~G~~~P~~~Np  275 (613)
T KOG0061|consen  201 LDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSP----RELLEFFSSLGFPCPELENP  275 (613)
T ss_pred             cchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCH----HHHHHHHHhCCCCCCCcCCh
Confidence            8999999999999999999999999999999999999999999998 899999999    99999999999  8888888


Q ss_pred             HHHhhc-----CH--HHHHHHH---HHHHHhccC-----------CCCCCcccc--CCcchHHHHHHHHHHHHHHhhcCh
Q 039187           79 SDIYKR-----SD--LYRRNKM---LIEHLSKQA-----------PGSKDLYFL--TQYSYFTQFMACLWKQWWSYWQNP  135 (265)
Q Consensus        79 ~~~~~~-----s~--~~~~~~~---~~~~~~~~~-----------~~~~~~~~~--~~~~~~~Q~~~L~~R~~~~~~R~~  135 (265)
                      +|.+.+     +.  ...+..+   ..+..+...           ........+  ...+||.|+..|++|.+++.+|++
T Consensus       276 adf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~  355 (613)
T KOG0061|consen  276 ADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDP  355 (613)
T ss_pred             HHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcH
Confidence            887765     11  1111111   111111000           000000001  122399999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------------------------
Q 039187          136 AYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS--------------------------------  183 (265)
Q Consensus       136 ~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~--------------------------------  183 (265)
                      .+...++++.+++++++|++|++++.+    ..+++++.|++++.+.+                                
T Consensus       356 ~~~~~r~~~~~~~~~~lg~~~~~~~~~----~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s  431 (613)
T KOG0061|consen  356 SLLLLRLIQSLVTGLLLGLLYLNLGND----AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLS  431 (613)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCc----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHH
Confidence            999999999999999999999999774    45666888776665554                                


Q ss_pred             -HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee----------------------------------------
Q 039187          184 -SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR----------------------------------------  222 (265)
Q Consensus       184 -y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~----------------------------------------  222 (265)
                       |++|++++++|..++.+++|++++|||+|++++...|+.                                        
T Consensus       432 ~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f  511 (613)
T KOG0061|consen  432 SYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPF  511 (613)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHH
Confidence             899999999999999999999999999999999887654                                        


Q ss_pred             -eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187          223 -LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM  261 (265)
Q Consensus       223 -l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~  261 (265)
                       +++|++++.+++|.||+|++|+|++||++|+++.|||.+
T Consensus       512 ~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~  551 (613)
T KOG0061|consen  512 LLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG  551 (613)
T ss_pred             HHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence             899999999999999999999999999999999999996

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=5.5e-44  Score=361.46  Aligned_cols=254  Identities=27%  Similarity=0.490  Sum_probs=219.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCC--
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSG--   75 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~--   75 (265)
                      ||+.++.++++.|+++++ .|+|||+++|||+.+++++||++++|++ |+++|+||+    +++.+||+++|  ||..  
T Consensus       240 LD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG~~~p~~~n  314 (1394)
T TIGR00956       240 LDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMGFKCPDRQT  314 (1394)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcCCCCCCCCC
Confidence            899999999999999998 5999999999999999999999999998 999999999    99999999999  5522  


Q ss_pred             ----------------------------cchHHHhhcCHHHHHHHHHHHHHhccC---------------CCCCCccccC
Q 039187           76 ----------------------------ADFSDIYKRSDLYRRNKMLIEHLSKQA---------------PGSKDLYFLT  112 (265)
Q Consensus        76 ----------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  112 (265)
                                                  .++++.|++|+.+++..+.++...++.               ..++.....+
T Consensus       315 ~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (1394)
T TIGR00956       315 TADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSS  394 (1394)
T ss_pred             hHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCC
Confidence                                        135566777777666655554322110               0011111222


Q ss_pred             Ccc--hHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------
Q 039187          113 QYS--YFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------  183 (265)
Q Consensus       113 ~~~--~~~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------  183 (265)
                      +++  +++|+++|++|++++.+|||.++.+++++.+++|+++|++|+++++    ++.+++++.|++|+++++       
T Consensus       395 ~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~----~~~~~~~r~g~lf~~~~~~~~~~~~  470 (1394)
T TIGR00956       395 PYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK----NTSDFYSRGGALFFAILFNAFSSLL  470 (1394)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC----CchhHHHHHHHHHHHHHHHHHHHHH
Confidence            343  8999999999999999999999999999999999999999999988    557899999999988775       


Q ss_pred             -------------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee----------------
Q 039187          184 -------------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR----------------  222 (265)
Q Consensus       184 -------------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~----------------  222 (265)
                                               |++|++++++|..++.+++|++|+|||+|++++++.|+.                
T Consensus       471 ~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~  550 (1394)
T TIGR00956       471 EIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLF  550 (1394)
T ss_pred             HHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     999999999999999999999999999999999987754                


Q ss_pred             -------------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187          223 -------------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR  263 (265)
Q Consensus       223 -------------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~  263 (265)
                                               +++||++|.++||+||+|++|+||++|++||++.|||++.+
T Consensus       551 ~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~  616 (1394)
T TIGR00956       551 RSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR  616 (1394)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc
Confidence                                     99999999999999999999999999999999999998754

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.4e-44  Score=346.98  Aligned_cols=255  Identities=26%  Similarity=0.501  Sum_probs=230.8

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCC---
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPS---   74 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~---   74 (265)
                      |||.|+.++++.||++++ .+.|+++++|||+.+++++||+|++|.+ |+++|+||+    +++++||+++|  ||.   
T Consensus       291 LDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~Gf~cP~r~~  365 (1391)
T KOG0065|consen  291 LDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMGFKCPPRKG  365 (1391)
T ss_pred             ccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcCccCCCccC
Confidence            899999999999999999 7999999999999999999999999998 999999999    99999999999  661   


Q ss_pred             -----------------------------CcchHHHhhcCHHHHHHHHHHHHHhccCCCCCCccccCCcc--hHHHHHHH
Q 039187           75 -----------------------------GADFSDIYKRSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYS--YFTQFMAC  123 (265)
Q Consensus        75 -----------------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Q~~~L  123 (265)
                                                   ..+++++|.+++.+++....++........++.....++|.  +|.|++++
T Consensus       366 ~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c  445 (1391)
T KOG0065|consen  366 TADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKAC  445 (1391)
T ss_pred             HHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHH
Confidence                                         13677788888888888777766555554555555566666  99999999


Q ss_pred             HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------------
Q 039187          124 LWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS--------------------  183 (265)
Q Consensus       124 ~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~--------------------  183 (265)
                      +.|+++.++||..++....++.+++++++|++|++.+.  . +..+.+.+.|++|++.++                    
T Consensus       446 ~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~-t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~  522 (1391)
T KOG0065|consen  446 TIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--S-TTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFY  522 (1391)
T ss_pred             HHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--c-ccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHH
Confidence            99999999999999999999999999999999999983  1 567888999999888886                    


Q ss_pred             ------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee-----------------------------
Q 039187          184 ------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR-----------------------------  222 (265)
Q Consensus       184 ------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~-----------------------------  222 (265)
                                  |.++.++.++|..++.+++|.+|+||++|+++++++||.                             
T Consensus       523 Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~A  602 (1391)
T KOG0065|consen  523 KHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIA  602 (1391)
T ss_pred             HhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence                        899999999999999999999999999999999999875                             


Q ss_pred             ------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187          223 ------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR  263 (265)
Q Consensus       223 ------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~  263 (265)
                                  +++||++|.++||+||+|++|+||+.|++|++++|||+++.
T Consensus       603 n~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~  655 (1391)
T KOG0065|consen  603 NLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRR  655 (1391)
T ss_pred             hhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhccc
Confidence                        89999999999999999999999999999999999999864

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=2.1e-43  Score=334.23  Aligned_cols=254  Identities=28%  Similarity=0.471  Sum_probs=210.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcch
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGADF   78 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~~   78 (265)
                      ||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++ |+++|+||+    +++.+||+++|  ||...+.
T Consensus       197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g~~~p~~~n~  271 (617)
T TIGR00955       197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLGHPCPENYNP  271 (617)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcCCCCCCCCCh
Confidence            7999999999999999988999999999999999999999999997 999999999    99999999999  7766555


Q ss_pred             HHHhhc-------------------------CHHHHHHHHHHHHHhccCCC-CCC--ccccCCcc--hHHHHHHHHHHHH
Q 039187           79 SDIYKR-------------------------SDLYRRNKMLIEHLSKQAPG-SKD--LYFLTQYS--YFTQFMACLWKQW  128 (265)
Q Consensus        79 ~~~~~~-------------------------s~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~--~~~Q~~~L~~R~~  128 (265)
                      +|.+.+                         ++.+++..+..+....+.+. ..+  .....++.  ++.|+.+|++|.+
T Consensus       272 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~  351 (617)
T TIGR00955       272 ADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSW  351 (617)
T ss_pred             HHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHH
Confidence            554432                         11111111111110100000 001  01112232  9999999999999


Q ss_pred             HHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------------------
Q 039187          129 WSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------------------  183 (265)
Q Consensus       129 ~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------------------  183 (265)
                      +..+|||.++..++++.+++++++|++|++.+.    ++.+++++.|++|+.+++                         
T Consensus       352 ~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~----~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~  427 (617)
T TIGR00955       352 LSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL----TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETR  427 (617)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999987    567888888887777653                         


Q ss_pred             --------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------------------
Q 039187          184 --------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR---------------------------------  222 (265)
Q Consensus       184 --------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~---------------------------------  222 (265)
                              |++|+.++++|..++.+++|++++|||+|++++++.|+.                                 
T Consensus       428 ~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~  507 (617)
T TIGR00955       428 SGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG  507 (617)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence                    999999999999999999999999999999999887644                                 


Q ss_pred             --------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187          223 --------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR  263 (265)
Q Consensus       223 --------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~  263 (265)
                              +|+|++++.++||+||+|++|+||++|++++++.|||.+..
T Consensus       508 ~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~  556 (617)
T TIGR00955       508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD  556 (617)
T ss_pred             HHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCc
Confidence                    89999999999999999999999999999999999998754

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=2e-43  Score=356.78  Aligned_cols=256  Identities=22%  Similarity=0.408  Sum_probs=209.8

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcc
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGAD   77 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~   77 (265)
                      ||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++ |+++|+||+    +++.+||+++|  ||...+
T Consensus       367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lGf~cP~~~n  441 (1470)
T PLN03140        367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCGFKCPERKG  441 (1470)
T ss_pred             ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcCCCCCCCCC
Confidence            899999999999999998 6999999999999999999999999998 999999999    99999999999  885554


Q ss_pred             hHHHhh--------------------------------cCHHHHHHHHHHHHHhccCCCCCCccccCCcc--hHHHHHHH
Q 039187           78 FSDIYK--------------------------------RSDLYRRNKMLIEHLSKQAPGSKDLYFLTQYS--YFTQFMAC  123 (265)
Q Consensus        78 ~~~~~~--------------------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Q~~~L  123 (265)
                      .+|...                                +|+.+++..+.++........++.....++|+  ++.|++.+
T Consensus       442 ~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~  521 (1470)
T PLN03140        442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKAC  521 (1470)
T ss_pred             hHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHH
Confidence            444332                                22222222211111000000111111223455  89999999


Q ss_pred             HHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH--------------------
Q 039187          124 LWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS--------------------  183 (265)
Q Consensus       124 ~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~--------------------  183 (265)
                      ++|+++..+||+..+.+++++.+++|+++|++|++++.+.. +..+.+.+.|.+|+++++                    
T Consensus       522 ~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~-~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~  600 (1470)
T PLN03140        522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTR-NEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFY  600 (1470)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            99999999999999999999999999999999999976543 334556677777766554                    


Q ss_pred             ------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee-----------------------------
Q 039187          184 ------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR-----------------------------  222 (265)
Q Consensus       184 ------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~-----------------------------  222 (265)
                                  |++|++++++|..++.+++|++|+|||+|++++++.||.                             
T Consensus       601 ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A  680 (1470)
T PLN03140        601 KQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA  680 (1470)
T ss_pred             HhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence                        999999999999999999999999999999999998764                             


Q ss_pred             ------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCC
Q 039187          223 ------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMR  262 (265)
Q Consensus       223 ------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~  262 (265)
                                  +|+||++|.++||+||+|++|+||++|++||++.|||.+.
T Consensus       681 ~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~  732 (1470)
T PLN03140        681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP  732 (1470)
T ss_pred             HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCc
Confidence                        9999999999999999999999999999999999999653

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=6.6e-43  Score=353.62  Aligned_cols=259  Identities=31%  Similarity=0.551  Sum_probs=220.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC---CCCCc-
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL---HPSGA-   76 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g---~P~~~-   76 (265)
                      ||+.++.++++.|++++++|+|||+++|||+..+++.||++++|++||+++|+|+++.+++++.+||++.|   ||... 
T Consensus       933 LD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956       933 LDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence            79999999999999999899999999999998899999999999996699999999888889999999998   56443 


Q ss_pred             -------------------chHHHhhcCHHHHHHHHHHHHHhccCCCCCC---ccccCCcc--hHHHHHHHHHHHHHHhh
Q 039187           77 -------------------DFSDIYKRSDLYRRNKMLIEHLSKQAPGSKD---LYFLTQYS--YFTQFMACLWKQWWSYW  132 (265)
Q Consensus        77 -------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~Q~~~L~~R~~~~~~  132 (265)
                                         ++.+.|++|+++++..+.+++..........   .....+++  ++.|+++|++|++++.|
T Consensus      1013 pAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~ 1092 (1394)
T TIGR00956      1013 PAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYW 1092 (1394)
T ss_pred             HHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence                               3445566666666555555444332111111   11112343  99999999999999999


Q ss_pred             cChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-----------------------------
Q 039187          133 QNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-----------------------------  183 (265)
Q Consensus       133 R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-----------------------------  183 (265)
                      |||.++..++++.+++|+++|++|+++++    ++.+++++.|++|+.+.+                             
T Consensus      1093 R~~~~~~~r~~~~i~~~l~~G~~f~~~~~----~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y 1168 (1394)
T TIGR00956      1093 RTPDYLYSKFFLTIFAALFIGFTFFKVGT----SLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTF 1168 (1394)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999988    567899999988876654                             


Q ss_pred             ----HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccc-------cee------------------------------
Q 039187          184 ----SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASK-------FFR------------------------------  222 (265)
Q Consensus       184 ----y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~-------~~~------------------------------  222 (265)
                          |++|++++|+|..++.+++|.+++||++|++.++..       |++                              
T Consensus      1169 ~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~ 1248 (1394)
T TIGR00956      1169 SWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAA 1248 (1394)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence                999999999999999999999999999999987654       322                              


Q ss_pred             -----------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187          223 -----------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR  263 (265)
Q Consensus       223 -----------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~  263 (265)
                                 +|||++++.++||+||+|++|+||++|++++++.+||+|.+
T Consensus      1249 ~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~ 1300 (1394)
T TIGR00956      1249 VLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVP 1300 (1394)
T ss_pred             HHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCe
Confidence                       99999999999999999999999999999999999999875

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=4.3e-42  Score=325.80  Aligned_cols=248  Identities=20%  Similarity=0.316  Sum_probs=203.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhCC--CCCCcch
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL--HPSGADF   78 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g--~P~~~~~   78 (265)
                      ||+.++.++++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.|++    +++.+||+++|  ||...|.
T Consensus       237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~----~~~~~~f~~~G~~~P~~~Np  311 (659)
T PLN03211        237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKG----SDAMAYFESVGFSPSFPMNP  311 (659)
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCH----HHHHHHHHHCCCCCCCCCCH
Confidence            7999999999999999988999999999999999999999999997 999999999    99999999999  8877777


Q ss_pred             HHHhhcCH------------HHHHH----------------HHHHHHHhccCCC--------CCCc-cccCCc--chHHH
Q 039187           79 SDIYKRSD------------LYRRN----------------KMLIEHLSKQAPG--------SKDL-YFLTQY--SYFTQ  119 (265)
Q Consensus        79 ~~~~~~s~------------~~~~~----------------~~~~~~~~~~~~~--------~~~~-~~~~~~--~~~~Q  119 (265)
                      +|.+.+..            .....                .+..+........        .+.. ..+..+  +|+.|
T Consensus       312 ADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q  391 (659)
T PLN03211        312 ADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ  391 (659)
T ss_pred             HHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence            66643210            00000                0000000000000        0000 011112  28999


Q ss_pred             HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH----------------
Q 039187          120 FMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS----------------  183 (265)
Q Consensus       120 ~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~----------------  183 (265)
                      +.+|++|++++ +||+.+..+++++.+++|+++|++|++++      ..+++++.|++|+.+++                
T Consensus       392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~------~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e  464 (659)
T PLN03211        392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD------FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE  464 (659)
T ss_pred             HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998 79999999999999999999999999874      35789999999887554                


Q ss_pred             -----------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee------------------------
Q 039187          184 -----------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR------------------------  222 (265)
Q Consensus       184 -----------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~------------------------  222 (265)
                                       |++|++++|+|..++.+++|++|+|||+|++++++.|+.                        
T Consensus       465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~  544 (659)
T PLN03211        465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM  544 (659)
T ss_pred             hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                             999999999999999999999999999999999887754                        


Q ss_pred             -----------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCC
Q 039187          223 -----------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMR  262 (265)
Q Consensus       223 -----------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~  262 (265)
                                       +||||+++  +||+||+|++|+||++|++|+++.|||++.
T Consensus       545 ~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~  599 (659)
T PLN03211        545 DAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEG  599 (659)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCc
Confidence                             99999997  899999999999999999999999999864

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.58  E-value=1.3e-15  Score=125.11  Aligned_cols=137  Identities=22%  Similarity=0.436  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHhhcChhHH-HHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-------------
Q 039187          118 TQFMACLWKQWWSYWQNPAYT-AVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-------------  183 (265)
Q Consensus       118 ~Q~~~L~~R~~~~~~R~~~~~-~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-------------  183 (265)
                      +|++.+++|++++.+|||... ...++.+++.++++|.++.++++..    .++ ++.+.++..+..             
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   75 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQ----DGF-NRPGLIFGSIIFSFFSSISGSSISF   75 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccc----ccc-ccceeeehhhHHhhhhhcccchhhh
Confidence            599999999999999999888 9999999999999999999887322    222 333332222221             


Q ss_pred             --------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccc-ccccee--------------------
Q 039187          184 --------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRT-ASKFFR--------------------  222 (265)
Q Consensus       184 --------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~-~~~~~~--------------------  222 (265)
                                          |.++|.+.+++..++.++++..+.+++.|++.+ ...++.                    
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~  155 (210)
T PF01061_consen   76 ERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALF  155 (210)
T ss_pred             hhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccch
Confidence                                999999999999999999999999999998886 211111                    


Q ss_pred             ------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhc
Q 039187          223 ------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRL  259 (265)
Q Consensus       223 ------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef  259 (265)
                                        ++||.+.|.+.+|+|++|+.++||++|++|++..++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  156 PSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence                              8899999999999999999999999999999998876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=98.96  E-value=4.3e-09  Score=88.51  Aligned_cols=135  Identities=8%  Similarity=0.031  Sum_probs=98.2

Q ss_pred             HHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCC---CCcChhhHHHhhhHHHHHHHH-------------------
Q 039187          126 KQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGR---HDQKSQDLFNATGSMFTAIIS-------------------  183 (265)
Q Consensus       126 R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~---~~~~~~~~~~~~g~l~~~~~~-------------------  183 (265)
                      |+++...|||......+++|++..++++.++.+.-.+   +.+.....+...|.+.+....                   
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFSGISVIWDRQFGFLK   80 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCHHH
Confidence            7788899999999999999999999999988654211   110111111222322221111                   


Q ss_pred             -----------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee------------------------------
Q 039187          184 -----------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR------------------------------  222 (265)
Q Consensus       184 -----------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~------------------------------  222 (265)
                                 |+++|.+.+++..+++.+++..+.+++.+.+........                              
T Consensus        81 ~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i  160 (236)
T TIGR01247        81 EILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQII  160 (236)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence                       899999999999999999999988887665543211100                              


Q ss_pred             ---------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcC
Q 039187          223 ---------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLG  260 (265)
Q Consensus       223 ---------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~  260 (265)
                               ++||.+.|.+.+|+|++|+.+++|.+|+.|++-....+
T Consensus       161 ~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~  207 (236)
T TIGR01247       161 MSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAG  207 (236)
T ss_pred             HHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhC
Confidence                     88999999999999999999999999999997654444

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=98.85  E-value=3.7e-08  Score=83.83  Aligned_cols=140  Identities=13%  Similarity=0.102  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHH--hhhHHHHHHHH------------
Q 039187          119 QFMACLWKQWWSYWQN-PAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFN--ATGSMFTAIIS------------  183 (265)
Q Consensus       119 Q~~~L~~R~~~~~~R~-~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~--~~g~l~~~~~~------------  183 (265)
                      +...+++|++++.+|+ |..+...++++++.-+++|..+....++.. .. +..+  ..|.+.+++..            
T Consensus         6 ~~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~-g~-~y~~f~~pg~l~~~~~~~~~~~~~~~~~~   83 (253)
T TIGR01291         6 NWAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVD-GV-SYAAFLAAGMVATSAMTASTFETIYATFA   83 (253)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567789999999999 999999999999999999999875422111 11 1111  11322221111            


Q ss_pred             --------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccccccce--e-------------------
Q 039187          184 --------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF--R-------------------  222 (265)
Q Consensus       184 --------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~--~-------------------  222 (265)
                                          ++++|.+.+....+++.++...+.+.+ |..+......  .                   
T Consensus        84 ~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~  162 (253)
T TIGR01291        84 RMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASLSMLVAAL  162 (253)
T ss_pred             HHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                889999888877777777665555443 3333221110  0                   


Q ss_pred             -------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187          223 -------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM  261 (265)
Q Consensus       223 -------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~  261 (265)
                                         ++||.+.|.+.+|.|++++.+++|++|+.|++-...+++
T Consensus       163 ~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~  220 (253)
T TIGR01291       163 APSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG  220 (253)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence                               789999999999999999999999999999976665544

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=98.78  E-value=9.8e-08  Score=81.20  Aligned_cols=140  Identities=9%  Similarity=0.105  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCC----CCcC--hhhHHHhhhHHHHHHHH-------
Q 039187          117 FTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGR----HDQK--SQDLFNATGSMFTAIIS-------  183 (265)
Q Consensus       117 ~~Q~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~----~~~~--~~~~~~~~g~l~~~~~~-------  183 (265)
                      ++++.++++|+++...|||..+...++++++..++++.+|...-+.    +.++  .-..+...|.+.+...+       
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~   80 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSL   80 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3678999999999999999999999999999999999999653110    0001  11122223332222211       


Q ss_pred             -----------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee------------------
Q 039187          184 -----------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR------------------  222 (265)
Q Consensus       184 -----------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~------------------  222 (265)
                                             +.++|.+......+++.++...+.+.. |.+.+...+..                  
T Consensus        81 ~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~  159 (253)
T TIGR03861        81 SMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLA  159 (253)
T ss_pred             HhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence                                   789999999888888877666655433 54433221110                  


Q ss_pred             -----------------------eccccccCCCCC---CcchhhhhhhcHHHHHHHHHhhh
Q 039187          223 -----------------------LIPGFMIPGPRI---PIRWRWYYWANPIAWTLYGLIAP  257 (265)
Q Consensus       223 -----------------------l~sG~~~~~~~i---p~~~~w~~~lsp~~y~~~al~~~  257 (265)
                                             ++||.+.|.+.+   |+|++|+.++||+.|..|++-..
T Consensus       160 la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~  220 (253)
T TIGR03861       160 LSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA  220 (253)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence                                   778999898766   88999999999999999988543

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=98.77  E-value=9e-08  Score=80.35  Aligned_cols=124  Identities=20%  Similarity=0.215  Sum_probs=88.4

Q ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHH-hhhHHHHHHHH---------------------------
Q 039187          132 WQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFN-ATGSMFTAIIS---------------------------  183 (265)
Q Consensus       132 ~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~-~~g~l~~~~~~---------------------------  183 (265)
                      +|||......+.+++++-++++.++.+... +  +  .... ..+.+.+....                           
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~   76 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSVT-H--N--RGATFIPVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPL   76 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCccC-C--c--chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCC
Confidence            699999999999999998889888876311 1  1  1111 22222211111                           


Q ss_pred             ----HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccccccce--e-----------------------------------
Q 039187          184 ----SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFF--R-----------------------------------  222 (265)
Q Consensus       184 ----y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~--~-----------------------------------  222 (265)
                          |+++|.+..++..+++.+++..+ +++.|++.......  .                                   
T Consensus        77 ~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~  155 (232)
T TIGR00025        77 PRLGILAGRSLAVVARVFLQTLILLVI-GFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL  155 (232)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence                99999998888887776666544 55668776433210  0                                   


Q ss_pred             ------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187          223 ------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM  261 (265)
Q Consensus       223 ------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~  261 (265)
                            ++||.+.|.+.+|+|++|+++++|.+|+.+++-....++
T Consensus       156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~  200 (232)
T TIGR00025       156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVS  200 (232)
T ss_pred             HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCC
Confidence                  899999999999999999999999999999986654443

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.51  E-value=1.2e-07  Score=82.41  Aligned_cols=64  Identities=20%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             CchHHHHHHHHHHHHHhhCC-CeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187            1 LDARAASIVIRTVRNTVDTG-RTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL   70 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~-~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~   70 (265)
                      ||+.++.++.+.|++++++| +||++|+|++. ++.+.||+|++|++ |++++.|++    +++.+.+...
T Consensus       167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~----~~l~~~~~~~  231 (293)
T COG1131         167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP----EELKEKFGGK  231 (293)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH----HHHHHhhccC
Confidence            79999999999999999976 89999999986 78888999999998 999999988    7777766554

>PRK15066 inner membrane transport permease; Provisional

Probab=98.51  E-value=1.5e-06  Score=74.08  Aligned_cols=144  Identities=13%  Similarity=0.120  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-----------
Q 039187          116 YFTQFMACLWKQWWSYWQNPAY-TAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-----------  183 (265)
Q Consensus       116 ~~~Q~~~L~~R~~~~~~R~~~~-~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-----------  183 (265)
                      .+.-++.+.+|+.+...|++.. +..-+++..+..+++|.++....++.++..-..+-..|.+......           
T Consensus         6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~~~~~i~   85 (257)
T PRK15066          6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSNVASSFF   85 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999854 4445555666667777665422111110111111222322211111           


Q ss_pred             --------------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee---------------------
Q 039187          184 --------------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR---------------------  222 (265)
Q Consensus       184 --------------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~---------------------  222 (265)
                                          +.+++.+......++++++...+.+...|.+......+.                     
T Consensus        86 ~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~~~~~l~~~ll~~~~f~~~gl~~a~~~  165 (257)
T PRK15066         86 SAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHHWGIVLLTVLLTAILFSLGGLINAVFA  165 (257)
T ss_pred             HHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                555666655555555555554444443344432111000                     


Q ss_pred             ------------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhc
Q 039187          223 ------------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRL  259 (265)
Q Consensus       223 ------------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef  259 (265)
                                        ++||.+.|.+.+|+|++|+.++||++|..|++=..-+
T Consensus       166 ~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~  220 (257)
T PRK15066        166 KSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL  220 (257)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc
Confidence                              7799999999999999999999999999998765433

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.47  E-value=3e-07  Score=75.77  Aligned_cols=61  Identities=23%  Similarity=0.319  Sum_probs=54.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYF   67 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF   67 (265)
                      ||+.++.++|+.|+++++ .|.|||++.||-.. .-++|||++=|++ |+++|.||+    +++.+.+
T Consensus       178 LDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~----~el~~~~  239 (258)
T COG3638         178 LDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPA----SELTDEA  239 (258)
T ss_pred             cChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCCh----hhhhHHH
Confidence            899999999999999998 69999999999864 5688999999998 999999999    6665443

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=98.40  E-value=4.3e-07  Score=74.83  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhccCcccc-ccccee------------------------------------eccc
Q 039187          184 SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRT-ASKFFR------------------------------------LIPG  226 (265)
Q Consensus       184 y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~-~~~~~~------------------------------------l~sG  226 (265)
                      ++++|.+..++..++++++...+.++..|++.. ...++.                                    +++|
T Consensus        62 ~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~~sG  141 (208)
T TIGR03062        62 IALAKLLPGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRFLALVLLVLQLGSSG  141 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHccCC
Confidence            577888888888888888888888887777653 111111                                    5789


Q ss_pred             cccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187          227 FMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM  261 (265)
Q Consensus       227 ~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~  261 (265)
                      .+.|.+.+|+|++|+++++|.+|+.+++-...+++
T Consensus       142 ~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~  176 (208)
T TIGR03062       142 GTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG  176 (208)
T ss_pred             CccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC
Confidence            89999999999999999999999999998777665

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.32  E-value=6.5e-07  Score=75.56  Aligned_cols=54  Identities=26%  Similarity=0.310  Sum_probs=50.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||...+.+++++++++++ +|.|||+++|+++- ..+.+|++++|++ |+++..|+|
T Consensus       169 LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p  223 (258)
T COG1120         169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTP  223 (258)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCc
Confidence            799999999999999996 69999999999984 5788999999998 999999998

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.15  E-value=2.4e-06  Score=74.77  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=53.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.++.++.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|++    +++.+
T Consensus       169 LD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~----~~l~~  227 (306)
T PRK13537        169 LDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAP----HALIE  227 (306)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence            7999999999999999888999999999986 78889999999998 999999998    66543

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.12  E-value=4.1e-06  Score=69.48  Aligned_cols=63  Identities=21%  Similarity=0.366  Sum_probs=57.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL   69 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~   69 (265)
                      ||+.+...+-+.++++.++|.|||.|.|+.. .+-++||++++|++ |+.|.+|+.    +++.+-|..
T Consensus       161 LDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v----~~ir~~~Gk  223 (300)
T COG4152         161 LDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV----EDIRRSFGK  223 (300)
T ss_pred             CChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH----HHHHHhcCC
Confidence            8999999999999999999999999999985 68899999999998 999999999    777775533

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.11  E-value=4.4e-06  Score=72.47  Aligned_cols=54  Identities=22%  Similarity=0.341  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       175 LD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~  228 (288)
T PRK13643        175 LDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTP  228 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999878999999999984 67788999999998 999999998

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.11  E-value=3.3e-06  Score=71.02  Aligned_cols=53  Identities=17%  Similarity=0.299  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      +|+.++..++++|+++.++|+||++++|+++ .+.+.||+++.|++  ++.+.||+
T Consensus       170 vD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln~--~~~~~G~~  222 (254)
T COG1121         170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLNR--HLIASGPP  222 (254)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEcC--eeEeccCh
Confidence            6999999999999999999999999999997 68899999999995  89999999

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.07  E-value=5.8e-06  Score=65.74  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=51.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.-..+...++.++++ ++.|+++++|+|. ++-...|+++++.+ |++.+.|+.
T Consensus       160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~  214 (231)
T COG3840         160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST  214 (231)
T ss_pred             cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence            799999999999999998 6999999999996 78899999999999 999999998

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.06  E-value=4.6e-06  Score=73.98  Aligned_cols=59  Identities=24%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.++.++.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |++++.|++    +++.+
T Consensus       203 LD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~----~~l~~  261 (340)
T PRK13536        203 LDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRP----HALID  261 (340)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH----HHHHh
Confidence            7999999999999999888999999999986 78889999999998 999999998    66543

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.02  E-value=6e-06  Score=69.48  Aligned_cols=54  Identities=9%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  221 (237)
T PRK11614        168 LAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTG  221 (237)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCH
Confidence            7999999999999999888999999999985 67889999999998 999999987

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.01  E-value=6.8e-06  Score=71.81  Aligned_cols=59  Identities=24%  Similarity=0.286  Sum_probs=53.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|++    +++.+
T Consensus       155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~----~~l~~  213 (302)
T TIGR01188       155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP----EELKR  213 (302)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHH
Confidence            7999999999999999888999999999985 78889999999998 999999998    66543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.99  E-value=7.1e-06  Score=70.75  Aligned_cols=54  Identities=15%  Similarity=0.241  Sum_probs=51.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||...+.+++++|+++.+ .|.++|+++|+.+ -+.+++|+|.+|.. |+++..||+
T Consensus       184 LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYa-G~iVE~g~~  238 (316)
T COG0444         184 LDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYA-GRIVEEGPV  238 (316)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEEC-cEEEEeCCH
Confidence            799999999999999998 7999999999997 57899999999998 999999998

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.99  E-value=1.2e-05  Score=65.63  Aligned_cols=54  Identities=22%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      |||....++.+.+++||+.|.|.+|++|... ..-+..|||+.|++ |+++-.|++
T Consensus       167 LDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~-G~iie~g~p  220 (240)
T COG1126         167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQ-GKIIEEGPP  220 (240)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeC-CEEEEecCH
Confidence            8999999999999999999999999999987 45688999999998 999999988

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.97  E-value=1.1e-05  Score=64.95  Aligned_cols=54  Identities=20%  Similarity=0.337  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||-..+.++|+.||++++ -|+||++++|+-+- .-...|+|+-|++ |+++..|++
T Consensus       166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~  220 (252)
T COG4604         166 LDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSP  220 (252)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCH
Confidence            789999999999999998 59999999999984 4467999999998 999999999

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.95  E-value=1.3e-05  Score=65.73  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHH-hhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFE-AFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL   69 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~-~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~   69 (265)
                      ||+.+..++.+.|+++++.|+|||+++|++. .+.+ .+|++++|.+ |++...|+.     ++.+.|..
T Consensus       135 LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~~-----~~~~~~~~  197 (200)
T cd03217         135 LDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK  197 (200)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEccH-----HHHhhhcc
Confidence            7999999999999999878999999999986 5555 6999999998 999999964     45555543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.94  E-value=1.1e-05  Score=70.64  Aligned_cols=58  Identities=24%  Similarity=0.334  Sum_probs=52.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++..+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++    +++.
T Consensus       166 LD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~----~~~~  223 (303)
T TIGR01288       166 LDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP----HALI  223 (303)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH----HHHH
Confidence            7999999999999999888999999999986 77788999999998 999999998    5554

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.94  E-value=1.1e-05  Score=67.85  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  227 (236)
T cd03219         174 LNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP  227 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence            7999999999999999888999999999986 67788999999998 999999987

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.94  E-value=9e-06  Score=73.62  Aligned_cols=54  Identities=30%  Similarity=0.333  Sum_probs=50.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|+++++.|+|||+++|++. ++.+.+|++++|++ |+++..|++
T Consensus       170 LD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~  223 (402)
T PRK09536        170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPP  223 (402)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            7999999999999999888999999999986 67889999999998 999999998

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.91  E-value=1.3e-05  Score=68.25  Aligned_cols=54  Identities=19%  Similarity=0.240  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       183 LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  236 (257)
T PRK10619        183 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP  236 (257)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999888999999999985 56778999999998 999999987

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.91  E-value=1.1e-05  Score=67.87  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+++.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       167 LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~  221 (235)
T cd03261         167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP  221 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence            799999999999999987 5999999999986 67788999999998 999999987

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.91  E-value=1.4e-05  Score=67.38  Aligned_cols=54  Identities=17%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus       167 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  220 (240)
T PRK09493        167 LDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP  220 (240)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence            7999999999999999878999999999986 56788999999998 999999987

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.91  E-value=1.2e-05  Score=66.82  Aligned_cols=54  Identities=15%  Similarity=0.288  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++++.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       163 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  216 (222)
T cd03224         163 LAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA  216 (222)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence            7999999999999999888999999999985 67788999999998 999999987

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.90  E-value=1.5e-05  Score=66.09  Aligned_cols=59  Identities=22%  Similarity=0.285  Sum_probs=53.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+-++..+-+++++|.+ -|.|+++++|+.. +++..+|++++|++ |+++..|++    +++.+
T Consensus       176 LDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~----~el~~  235 (263)
T COG1127         176 LDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTP----EELLA  235 (263)
T ss_pred             CCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCH----HHHHh
Confidence            799999999999999998 5999999999986 68999999999998 999999999    55543

>TIGR01248 drrC daunorubicin resistance protein C

Probab=97.89  E-value=1e-05  Score=63.45  Aligned_cols=34  Identities=12%  Similarity=-0.055  Sum_probs=31.7

Q ss_pred             eccccccCCCCCCcchhhhhhhcHHHHHHHHHhh
Q 039187          223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIA  256 (265)
Q Consensus       223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~  256 (265)
                      ++||.+.|.+++|+|++|+.+++|.+|+.|++=.
T Consensus       114 flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R~  147 (152)
T TIGR01248       114 FLNPGATPIKLFPDWAQPLIAHQPISPAIEACAD  147 (152)
T ss_pred             HHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHHH
Confidence            7889999999999999999999999999999753

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.89  E-value=1.6e-05  Score=66.92  Aligned_cols=54  Identities=22%  Similarity=0.293  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  229 (241)
T cd03256         175 LDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP  229 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence            799999999999999987 5999999999986 57779999999998 999999987

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.89  E-value=1.5e-05  Score=66.76  Aligned_cols=54  Identities=19%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       164 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  217 (232)
T cd03218         164 VDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTP  217 (232)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCH
Confidence            7999999999999999888999999999986 78889999999998 999999987

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.88  E-value=1.5e-05  Score=68.79  Aligned_cols=54  Identities=24%  Similarity=0.365  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       168 LD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~  222 (277)
T PRK13652        168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTV  222 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCH
Confidence            7999999999999999875 999999999986 67789999999998 999999998

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=97.88  E-value=1.4e-05  Score=70.98  Aligned_cols=54  Identities=15%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+++.|+++.++ |.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       171 LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv~~g~~  225 (343)
T TIGR02314       171 LDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQGTV  225 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999884 999999999985 67788999999998 999999997

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.87  E-value=1.4e-05  Score=69.40  Aligned_cols=54  Identities=17%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       176 LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~  230 (290)
T PRK13634        176 LDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTP  230 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 4999999999986 67888999999998 999999987

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.87  E-value=1.5e-05  Score=70.14  Aligned_cols=54  Identities=19%  Similarity=0.341  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++.++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       207 LD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~-G~i~~~g~~  260 (320)
T PRK13631        207 LDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTGTP  260 (320)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999878999999999986 56788999999998 999999998

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=97.86  E-value=1.7e-05  Score=69.46  Aligned_cols=54  Identities=19%  Similarity=0.286  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       196 LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g~~  249 (305)
T PRK13651        196 LDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDGDT  249 (305)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999888999999999985 57788999999998 999999998

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.85  E-value=1.8e-05  Score=66.44  Aligned_cols=54  Identities=15%  Similarity=0.302  Sum_probs=50.5

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+....++++.++++.+. |+|||+++|+.. .+.+.+|++++|.+ |++++.|++
T Consensus       169 LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p  223 (235)
T COG1122         169 LDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGDP  223 (235)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCH
Confidence            7999999999999999985 799999999975 78888999999998 999999998

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.85  E-value=1.8e-05  Score=66.64  Aligned_cols=54  Identities=28%  Similarity=0.303  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       167 LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  221 (239)
T cd03296         167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTP  221 (239)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence            7999999999999999874 899999999985 57788999999998 999999987

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.85  E-value=1.7e-05  Score=66.82  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++|+|||+++|++. .+.+. +|++++|.+ |+++..|++
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~  229 (243)
T TIGR01978       175 LDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV  229 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence            7999999999999999888999999999985 55566 799999998 999999987

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.84  E-value=1.8e-05  Score=68.13  Aligned_cols=54  Identities=20%  Similarity=0.314  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|++++++|.|||+++|++. .+.+.+|++++|++ |++++.|++
T Consensus       169 LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  222 (274)
T PRK13647        169 LDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDK  222 (274)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999888999999999975 56688999999998 999999987

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.84  E-value=1.8e-05  Score=68.54  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|++++++ |+||++++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       172 LD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~  226 (283)
T PRK13636        172 LDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNP  226 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999875 999999999986 46678999999998 999999998

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=97.84  E-value=2.3e-05  Score=65.33  Aligned_cols=54  Identities=22%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~  208 (223)
T TIGR03740       155 LDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKI  208 (223)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecCh
Confidence            7999999999999999878999999999986 57788999999998 999999987

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.84  E-value=2e-05  Score=66.88  Aligned_cols=54  Identities=26%  Similarity=0.290  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       175 LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  228 (250)
T PRK11264        175 LDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA  228 (250)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999888999999999985 67788999999998 999999987

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.83  E-value=2e-05  Score=68.39  Aligned_cols=54  Identities=13%  Similarity=0.263  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       175 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~  229 (287)
T PRK13637        175 LDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTP  229 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999874 999999999985 67788999999998 999999988

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=97.82  E-value=2.2e-05  Score=69.47  Aligned_cols=54  Identities=11%  Similarity=0.191  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|+++.+ .|.|+|+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       192 LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~  246 (330)
T PRK09473        192 LDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNA  246 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 4999999999986 56678999999998 999999998

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=97.81  E-value=2.3e-05  Score=66.70  Aligned_cols=54  Identities=22%  Similarity=0.316  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       169 LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  222 (255)
T PRK11231        169 LDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTP  222 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCH
Confidence            7999999999999999878999999999986 67889999999998 999999987

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.81  E-value=2.2e-05  Score=65.84  Aligned_cols=54  Identities=19%  Similarity=0.305  Sum_probs=49.3

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       171 LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  225 (233)
T cd03258         171 LDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV  225 (233)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            7999999999999999874 999999999985 67788999999998 999999987

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.80  E-value=2.1e-05  Score=66.67  Aligned_cols=53  Identities=13%  Similarity=0.070  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++. +++|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       177 LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~  229 (250)
T PRK14245        177 LDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDT  229 (250)
T ss_pred             CCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCH
Confidence            79999999999999995 4799999999986 67788999999998 999999988

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.80  E-value=3.1e-05  Score=63.08  Aligned_cols=54  Identities=22%  Similarity=0.315  Sum_probs=50.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||...+..++++.|++++.|-.|+++.|+.+- .-.++|+|++|.+ |+++..|++
T Consensus       172 LDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Grv~a~g~p  225 (259)
T COG4559         172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GRVIASGSP  225 (259)
T ss_pred             cchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-CeEeecCCH
Confidence            78999999999999999999999999999985 4578999999998 999999999

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=97.79  E-value=2.4e-05  Score=69.61  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       171 LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~  225 (343)
T PRK11153        171 LDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTV  225 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999986 67788999999998 999999987

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.79  E-value=2.6e-05  Score=66.35  Aligned_cols=54  Identities=13%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       184 LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~  238 (255)
T PRK11300        184 LNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTP  238 (255)
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCH
Confidence            7999999999999999885 999999999986 67788999999998 999999987

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.78  E-value=2.3e-05  Score=72.44  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||..++.+|+++||++.+ .|.++|.++|+|. -+.+++|++++|.+ |+++..|++    +++.+
T Consensus       185 LDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~-G~iVE~G~~----~~i~~  244 (539)
T COG1123         185 LDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYK-GEIVETGPT----EEILS  244 (539)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEEC-CEEEEecCH----HHHHh
Confidence            799999999999999997 7999999999997 47788999999998 999999999    55554

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=97.77  E-value=2.7e-05  Score=68.86  Aligned_cols=54  Identities=9%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|+++.+ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       189 LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~  243 (330)
T PRK15093        189 MEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPS  243 (330)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999988 5999999999985 67788999999998 999999987

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.77  E-value=2.8e-05  Score=64.85  Aligned_cols=53  Identities=17%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|++
T Consensus       144 LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~  196 (223)
T TIGR03771       144 LDMPTQELLTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTP  196 (223)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCH
Confidence            7999999999999999878999999999986 688889999999 7 899999987

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=2.6e-05  Score=67.14  Aligned_cols=53  Identities=21%  Similarity=0.398  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|+++.+.|.|||+++|++. ++ ..+|++++|.+ |+++..|++
T Consensus       167 LD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~  219 (274)
T PRK13644        167 LDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEP  219 (274)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999878999999999987 45 66999999998 999999997

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=3.1e-05  Score=64.90  Aligned_cols=54  Identities=11%  Similarity=0.110  Sum_probs=49.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~  214 (232)
T PRK10771        160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT  214 (232)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 5999999999986 66788999999998 999999987

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=97.77  E-value=2.9e-05  Score=66.16  Aligned_cols=54  Identities=26%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.++|.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  221 (256)
T TIGR03873       168 LDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPP  221 (256)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCH
Confidence            7999999999999999877899999999986 67788999999998 999999987

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.77  E-value=3e-05  Score=66.16  Aligned_cols=54  Identities=22%  Similarity=0.289  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHh-hCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTV-DTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~-~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++ +.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       171 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  225 (258)
T PRK13548        171 LDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTP  225 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCH
Confidence            79999999999999998 57999999999985 57788999999998 999998887

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=3.1e-05  Score=66.60  Aligned_cols=54  Identities=26%  Similarity=0.423  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       167 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  220 (271)
T PRK13638        167 LDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP  220 (271)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999877999999999986 56788999999998 999999987

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=3e-05  Score=66.84  Aligned_cols=54  Identities=20%  Similarity=0.284  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       168 LD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  221 (275)
T PRK13639        168 LDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTP  221 (275)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999878999999999975 66788999999998 999999988

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=97.77  E-value=2.8e-05  Score=69.35  Aligned_cols=54  Identities=24%  Similarity=0.292  Sum_probs=50.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++.+ .|.|+|+++|++. ++.+++|++++|++ |+++..|++
T Consensus       165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~  219 (353)
T TIGR03265       165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTP  219 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999985 78999999999998 999999998

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=3.1e-05  Score=68.35  Aligned_cols=54  Identities=19%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|+++.+ .|.|+|+++|+.+ .+.+.+|+|++|.+ |+++..|++
T Consensus       184 LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~  238 (326)
T PRK11022        184 LDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKA  238 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 6999999999986 56788999999998 999999998

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.76  E-value=3.3e-05  Score=62.43  Aligned_cols=54  Identities=19%  Similarity=0.330  Sum_probs=50.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||-.+...+-+.++++...|++||.++|... |+-.+||+++++.+ |++++.|.+
T Consensus       164 LDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~  217 (245)
T COG4555         164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI  217 (245)
T ss_pred             ccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence            7889999999999999999999999999975 78889999999999 999999998

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.76  E-value=2.9e-05  Score=65.51  Aligned_cols=54  Identities=24%  Similarity=0.348  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       166 LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  220 (242)
T cd03295         166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP  220 (242)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            799999999999999987 4999999999985 67788999999998 999999987

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.76  E-value=3.2e-05  Score=65.19  Aligned_cols=54  Identities=20%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       168 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  221 (241)
T PRK10895        168 VDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTP  221 (241)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCH
Confidence            7999999999999999888999999999984 67788999999998 999999987

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.76  E-value=3e-05  Score=65.43  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  230 (243)
T TIGR02315       176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAP  230 (243)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCH
Confidence            799999999999999987 5899999999986 56788999999998 999999987

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.76  E-value=2.9e-05  Score=67.01  Aligned_cols=54  Identities=15%  Similarity=0.284  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       176 LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  229 (280)
T PRK13649        176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKP  229 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999878999999999985 67788999999998 999999987

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.75  E-value=3.1e-05  Score=67.13  Aligned_cols=54  Identities=20%  Similarity=0.297  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       176 LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~  230 (286)
T PRK13646        176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSP  230 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 5999999999986 57788999999998 999999987

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.75  E-value=4.5e-05  Score=65.47  Aligned_cols=54  Identities=17%  Similarity=0.279  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      |||.|+..++++|+++-+ .|-||++++|++. -+-+.||++.+|.+ |+++..|+.
T Consensus       172 LDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lvE~G~v  226 (339)
T COG1135         172 LDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLVEEGTV  226 (339)
T ss_pred             CChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEEEeccH
Confidence            899999999999999977 6999999999985 35677999999998 999999997

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.75  E-value=3.1e-05  Score=66.47  Aligned_cols=54  Identities=15%  Similarity=0.308  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       174 LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~  228 (269)
T PRK11831        174 QDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSA  228 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999874 899999999975 67788999999998 999999987

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.75  E-value=3.2e-05  Score=69.06  Aligned_cols=54  Identities=26%  Similarity=0.249  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.++ |.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~  221 (353)
T PRK10851        167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTP  221 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999875 999999999985 78899999999998 999999998

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=97.75  E-value=3.5e-05  Score=65.38  Aligned_cols=54  Identities=22%  Similarity=0.306  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       164 LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  217 (248)
T PRK03695        164 LDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR  217 (248)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999878999999999986 57788999999998 999999987

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.74  E-value=3.3e-05  Score=66.96  Aligned_cols=54  Identities=17%  Similarity=0.292  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       176 LD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~  229 (287)
T PRK13641        176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASP  229 (287)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999878999999999985 67788999999998 999999987

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=97.74  E-value=3.9e-05  Score=65.71  Aligned_cols=54  Identities=13%  Similarity=0.186  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       174 LD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  228 (265)
T PRK10253        174 LDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAP  228 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 4899999999986 68899999999998 999999987

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.74  E-value=3.1e-05  Score=66.66  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       185 LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  239 (272)
T PRK13547        185 LDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAP  239 (272)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence            7999999999999999875 899999999986 67788999999998 999999987

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.73  E-value=3.4e-05  Score=64.60  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       156 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  210 (230)
T TIGR02770       156 LDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV  210 (230)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 4899999999986 67788999999998 999999987

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=97.73  E-value=3.9e-05  Score=64.49  Aligned_cols=54  Identities=24%  Similarity=0.297  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  214 (235)
T cd03299         160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP  214 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            7999999999999999874 999999999985 57788999999998 999999987

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=97.73  E-value=3.8e-05  Score=65.96  Aligned_cols=54  Identities=20%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       191 LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~  245 (269)
T cd03294         191 LDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP  245 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 4899999999986 67788999999998 999999987

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=97.73  E-value=3.7e-05  Score=64.76  Aligned_cols=54  Identities=24%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++. |+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~  215 (237)
T TIGR00968       161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP  215 (237)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence            7999999999999999885 899999999985 67788999999998 999999997

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=97.73  E-value=3.5e-05  Score=68.07  Aligned_cols=54  Identities=19%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ .|+|||+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       131 LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~  185 (325)
T TIGR01187       131 LDKKLRDQMQLELKTIQEQLGITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTP  185 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999985 78899999999998 999999988

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=97.73  E-value=3.5e-05  Score=67.27  Aligned_cols=58  Identities=16%  Similarity=0.229  Sum_probs=51.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |++++.|+.    +++..
T Consensus       164 LD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~----~~~~~  221 (301)
T TIGR03522       164 LDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL----DELSA  221 (301)
T ss_pred             CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH----HHHHH
Confidence            799999999999999975 799999999986 78899999999998 999999998    55543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=97.72  E-value=3.3e-05  Score=66.14  Aligned_cols=54  Identities=13%  Similarity=0.168  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|+++.+. |+|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       181 LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  235 (265)
T TIGR02769       181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDV  235 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCH
Confidence            7999999999999999874 999999999986 66778999999997 999999998

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.72  E-value=4.1e-05  Score=65.05  Aligned_cols=54  Identities=17%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       177 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  231 (252)
T TIGR03005       177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP  231 (252)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 4999999999986 67788999999998 999999887

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.72  E-value=3.5e-05  Score=66.85  Aligned_cols=54  Identities=17%  Similarity=0.298  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       181 LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  235 (289)
T PRK13645        181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSP  235 (289)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 5999999999986 67788999999998 999999987

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=97.70  E-value=4e-05  Score=68.57  Aligned_cols=54  Identities=19%  Similarity=0.230  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHHHHHHhhC--CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT--GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~--~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.++  |.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       168 LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~  223 (362)
T TIGR03258       168 LDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEP  223 (362)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999885  899999999985 78899999999998 999999998

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.70  E-value=4.5e-05  Score=68.13  Aligned_cols=54  Identities=17%  Similarity=0.166  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++.+.|+++.++ |.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~  219 (356)
T PRK11650        165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP  219 (356)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence            7999999999999999874 999999999985 78999999999998 999999998

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.69  E-value=4.4e-05  Score=65.14  Aligned_cols=53  Identities=17%  Similarity=0.084  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       185 LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  237 (258)
T PRK14268        185 LDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQT  237 (258)
T ss_pred             cCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999965 899999999985 56788999999998 999999987

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=97.69  E-value=4.2e-05  Score=67.61  Aligned_cols=54  Identities=20%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|+++.+ .|.|||+++|+.+ .+.+.+|++++|.+ |+++..|++
T Consensus       185 LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~  239 (327)
T PRK11308        185 LDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTK  239 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 5999999999986 56678999999998 999999997

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.68  E-value=5.9e-05  Score=62.66  Aligned_cols=60  Identities=17%  Similarity=0.179  Sum_probs=53.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRY   66 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~y   66 (265)
                      ||+..+.+++++|.++.+ .|-|.|+++|+-+ -+..+||||.+|.+ |+++..+|+    +++.+.
T Consensus       172 LD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~----~~l~~~  232 (252)
T COG1124         172 LDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPT----EELLSH  232 (252)
T ss_pred             hcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeech----hhhhcC
Confidence            799999999999999998 6889999999986 68899999999999 999999999    555443

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.68  E-value=4.1e-05  Score=64.18  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  199 (230)
T TIGR01184       145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI  199 (230)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence            799999999999999987 4899999999986 67788999999998 999988876

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.68  E-value=4.5e-05  Score=65.34  Aligned_cols=54  Identities=22%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       178 LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~  232 (265)
T PRK10575        178 LDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTP  232 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence            7999999999999999874 999999999986 67788999999998 999999987

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.67  E-value=5.2e-05  Score=64.78  Aligned_cols=55  Identities=22%  Similarity=0.134  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC----CeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG----RQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g----g~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+|    |+++..|++
T Consensus       181 LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~  240 (261)
T PRK14258        181 LDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLT  240 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCH
Confidence            799999999999999976 5999999999985 788899999999953    899999998

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.67  E-value=5.2e-05  Score=64.42  Aligned_cols=53  Identities=17%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       180 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  232 (253)
T PRK14267        180 IDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPT  232 (253)
T ss_pred             CCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 699999999986 67788999999998 999999987

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=97.67  E-value=5e-05  Score=67.85  Aligned_cols=54  Identities=13%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       162 LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  216 (354)
T TIGR02142       162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI  216 (354)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence            7999999999999999875 999999999986 67888999999998 999999987

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.66  E-value=5.5e-05  Score=63.82  Aligned_cols=54  Identities=19%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++|+|+|+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       172 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~  225 (242)
T PRK11124        172 LDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDA  225 (242)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999878999999999986 66678999999998 999999987

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=97.66  E-value=4.7e-05  Score=67.35  Aligned_cols=54  Identities=15%  Similarity=0.252  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|+++.+ .|.|+|+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~  246 (331)
T PRK15079        192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTY  246 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999986 66788999999998 999999987

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=97.66  E-value=6.9e-05  Score=63.41  Aligned_cols=54  Identities=22%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|+|||+++|++. .+... +|++++|.+ |++++.|+.
T Consensus       176 LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g~i~~~g~~  230 (248)
T PRK09580        176 LDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDF  230 (248)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-CeEEEeCCH
Confidence            7999999999999999888999999999986 34444 899999997 999999987

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.65  E-value=5.7e-05  Score=63.93  Aligned_cols=53  Identities=15%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       175 LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  227 (247)
T TIGR00972       175 LDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT  227 (247)
T ss_pred             CCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 489999999986 67788999999998 999999987

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=5.8e-05  Score=63.68  Aligned_cols=54  Identities=13%  Similarity=0.079  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  216 (241)
T PRK14250        162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT  216 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence            799999999999999987 5999999999986 57788999999998 999999987

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=97.65  E-value=7.3e-05  Score=63.43  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++|+|||+++|++.. +.+. +|++++|.+ |++++.|++
T Consensus       182 LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~-G~i~~~~~~  236 (252)
T CHL00131        182 LDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN-GKIIKTGDA  236 (252)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-CEEEEecCh
Confidence            79999999999999998889999999999753 4444 799999997 999999988

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.65  E-value=5.4e-05  Score=64.42  Aligned_cols=54  Identities=15%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       171 LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  225 (254)
T PRK10418        171 LDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDV  225 (254)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            799999999999999987 5899999999986 56688999999998 999999987

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.65  E-value=5.9e-05  Score=64.01  Aligned_cols=53  Identities=11%  Similarity=0.169  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       180 LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  232 (251)
T PRK14244        180 LDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT  232 (251)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence            799999999999999964 899999999986 67788999999998 999999887

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.64  E-value=5.8e-05  Score=63.14  Aligned_cols=54  Identities=13%  Similarity=0.124  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++++ .|+|||+++|++. ++.+.+|+++++.+ |+++..|+.
T Consensus       162 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~  216 (230)
T TIGR03410       162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAG  216 (230)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 4899999999985 67778999999998 999999998

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.64  E-value=6.5e-05  Score=64.19  Aligned_cols=54  Identities=31%  Similarity=0.453  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++++ .|.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus       183 LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~  237 (262)
T PRK09984        183 LDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSS  237 (262)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 5899999999986 56788999999998 999999987

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.64  E-value=8.1e-05  Score=62.90  Aligned_cols=64  Identities=25%  Similarity=0.324  Sum_probs=57.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL   70 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~   70 (265)
                      ||-.++..+.+.||+..+ .+.||+.|+|.-+ ++-..||+|+++++ |+++|.|+-    +++.+-|...
T Consensus       187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l----~~l~~~f~~~  251 (325)
T COG4586         187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL----AQLQEQFGPY  251 (325)
T ss_pred             cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccH----HHHHHHhCCc
Confidence            688899999999999987 6999999999986 89999999999999 999999999    7887766543

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=97.64  E-value=5.4e-05  Score=63.49  Aligned_cols=54  Identities=19%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |++...|+.
T Consensus       161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~  215 (232)
T cd03300         161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP  215 (232)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence            799999999999999987 4999999999985 57788999999998 999998876

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.64  E-value=5.4e-05  Score=67.49  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ .|.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~  221 (351)
T PRK11432        167 LDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSP  221 (351)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999985 78899999999998 999999998

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=97.64  E-value=5.7e-05  Score=64.78  Aligned_cols=54  Identities=17%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       180 LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  234 (267)
T PRK15112        180 LDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGST  234 (267)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence            799999999999999987 4999999999985 67778999999998 999998887

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=97.64  E-value=5.7e-05  Score=63.72  Aligned_cols=53  Identities=13%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       174 LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~  226 (242)
T TIGR03411       174 MTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL  226 (242)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence            799999999999999976 799999999986 67788999999998 999999987

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=97.63  E-value=5.6e-05  Score=67.48  Aligned_cols=54  Identities=17%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++. |+|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~  213 (352)
T PRK11144        159 LDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL  213 (352)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence            7999999999999999875 899999999985 78899999999998 999999998

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.63  E-value=5.8e-05  Score=65.17  Aligned_cols=53  Identities=25%  Similarity=0.302  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++++.|++++++ |+|||+++|++. ++ ..+|++++|.+ |+++..|++
T Consensus       171 LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~g~~  224 (279)
T PRK13650        171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVESTSTP  224 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999984 999999999986 44 57999999998 999999988

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.63  E-value=6e-05  Score=67.42  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~  214 (363)
T TIGR01186       160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP  214 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence            799999999999999987 5999999999986 57889999999998 999999987

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.63  E-value=6.4e-05  Score=64.52  Aligned_cols=53  Identities=25%  Similarity=0.304  Sum_probs=47.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ .|+|||+++|++. ++.. +|++++|.+ |+++..|++
T Consensus       173 LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~-G~i~~~g~~  226 (269)
T PRK13648        173 LDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNK-GTVYKEGTP  226 (269)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEEC-CEEEEecCH
Confidence            799999999999999987 4899999999986 4444 999999998 999999987

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=97.63  E-value=6.8e-05  Score=63.06  Aligned_cols=52  Identities=25%  Similarity=0.373  Sum_probs=47.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++. +|+|||+++|++. ++ +.+|++++|.+ |++++.|+.
T Consensus       170 LD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~  221 (238)
T cd03249         170 LDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH  221 (238)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence            79999999999999997 7999999999986 34 47999999998 999999987

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.63  E-value=6e-05  Score=63.95  Aligned_cols=53  Identities=13%  Similarity=0.004  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       178 LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  230 (251)
T PRK14270        178 LDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKT  230 (251)
T ss_pred             CCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCH
Confidence            799999999999999976 689999999985 67788999999998 999999987

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.62  E-value=6e-05  Score=67.73  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++.+ .|.|+|+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~  218 (369)
T PRK11000        164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP  218 (369)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999985 78899999999998 999999998

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.62  E-value=6.7e-05  Score=63.63  Aligned_cols=53  Identities=17%  Similarity=0.136  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       177 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  229 (250)
T PRK14247        177 LDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPT  229 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCH
Confidence            799999999999999965 899999999986 67788999999998 999999987

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=97.62  E-value=7.5e-05  Score=62.76  Aligned_cols=52  Identities=23%  Similarity=0.418  Sum_probs=47.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ |+|||+++|++. ++ +.+|++++|.+ |++++.|++
T Consensus       169 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~  220 (237)
T cd03252         169 LDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH  220 (237)
T ss_pred             CCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999975 899999999996 34 56999999998 999999987

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=97.62  E-value=6.9e-05  Score=63.58  Aligned_cols=53  Identities=15%  Similarity=0.018  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       179 LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  231 (252)
T PRK14239        179 LDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDT  231 (252)
T ss_pred             cCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999965 689999999986 67788999999998 999999987

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=6.5e-05  Score=63.67  Aligned_cols=53  Identities=13%  Similarity=0.032  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       176 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~  228 (249)
T PRK14253        176 LDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT  228 (249)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 589999999985 67888999999998 999999987

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=7e-05  Score=63.48  Aligned_cols=53  Identities=19%  Similarity=0.201  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       177 LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  229 (250)
T PRK14262        177 LDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT  229 (250)
T ss_pred             cCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            799999999999999975 789999999986 57788999999998 999999987

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.61  E-value=7.4e-05  Score=63.72  Aligned_cols=54  Identities=26%  Similarity=0.301  Sum_probs=49.0

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++ |.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus       182 LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~  236 (258)
T PRK11701        182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLT  236 (258)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999874 899999999985 56678999999998 999999987

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=7.2e-05  Score=63.31  Aligned_cols=53  Identities=11%  Similarity=0.108  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       173 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  225 (246)
T PRK14269        173 LDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES  225 (246)
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence            799999999999999975 899999999985 57788999999998 999999987

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.61  E-value=7.3e-05  Score=63.57  Aligned_cols=53  Identities=11%  Similarity=0.004  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+++.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       181 LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  233 (254)
T PRK14273        181 LDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESST  233 (254)
T ss_pred             cCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999964 799999999986 56788999999998 999999987

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.60  E-value=8e-05  Score=64.32  Aligned_cols=53  Identities=26%  Similarity=0.325  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+++.|++++++ |+|||+++|++.. +. .+|++++|.+ |++++.|++
T Consensus       171 LD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~-G~i~~~g~~  224 (279)
T PRK13635        171 LDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNK-GEILEEGTP  224 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999985 9999999999864 44 5999999998 999999987

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.60  E-value=7.5e-05  Score=63.70  Aligned_cols=53  Identities=11%  Similarity=0.060  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++.+ ++|+|+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       186 LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  238 (259)
T PRK14274        186 LDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDT  238 (259)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999975 799999999986 67788999999998 999999998

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.60  E-value=7.4e-05  Score=63.45  Aligned_cols=54  Identities=22%  Similarity=0.280  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       179 LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~  233 (253)
T TIGR02323       179 LDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT  233 (253)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 5999999999985 67778999999998 999999987

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.60  E-value=6.3e-05  Score=70.50  Aligned_cols=54  Identities=19%  Similarity=0.319  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+++.|+++++.|.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus       176 LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  229 (510)
T PRK09700        176 LTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMV  229 (510)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecch
Confidence            7999999999999999888999999999975 66788999999998 999999988

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.60  E-value=7.3e-05  Score=63.50  Aligned_cols=53  Identities=17%  Similarity=0.119  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ |+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       180 LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~  232 (253)
T PRK14242        180 LDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPT  232 (253)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999954 799999999986 56788999999998 999999887

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.59  E-value=7.4e-05  Score=64.11  Aligned_cols=53  Identities=8%  Similarity=0.098  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       195 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  247 (268)
T PRK14248        195 LDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQT  247 (268)
T ss_pred             cCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999965 689999999985 67788999999998 999999987

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.59  E-value=7.7e-05  Score=63.30  Aligned_cols=53  Identities=11%  Similarity=0.075  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       179 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  231 (252)
T PRK14272        179 LDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT  231 (252)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999975 799999999986 67788999999998 999999987

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=97.59  E-value=7.4e-05  Score=67.19  Aligned_cols=54  Identities=19%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++.+ .|.|+|+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~  229 (375)
T PRK09452        175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTP  229 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999988 5999999999985 78899999999998 999999998

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=97.58  E-value=7.5e-05  Score=64.23  Aligned_cols=53  Identities=15%  Similarity=0.065  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       199 LD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  251 (272)
T PRK14236        199 LDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDT  251 (272)
T ss_pred             CCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCH
Confidence            799999999999999986 789999999985 57788999999998 999999987

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.58  E-value=9.3e-05  Score=68.75  Aligned_cols=61  Identities=11%  Similarity=0.118  Sum_probs=53.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYF   67 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF   67 (265)
                      ||+.+...+++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++    +++.+-+
T Consensus       174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~----~el~~~~  234 (549)
T PRK13545        174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDI----KEVVDHY  234 (549)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHhhH
Confidence            7999999999999999888999999999985 67788999999998 999999988    6655433

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=97.57  E-value=6.3e-05  Score=64.55  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       182 LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~  236 (268)
T PRK10419        182 LDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPV  236 (268)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCCh
Confidence            799999999999999987 4899999999985 67778999999997 999999988

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=97.57  E-value=0.00014  Score=60.56  Aligned_cols=63  Identities=16%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             chHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhhC
Q 039187            2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKLL   70 (265)
Q Consensus         2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~   70 (265)
                      |+.=..+..+.++++.++++|||++.|++. .+-+.||+++.|.+ |++.+.|.+    +++.++++..
T Consensus       179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~----~~vi~~Y~~~  241 (249)
T COG1134         179 DAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSP----EEVIPAYEED  241 (249)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCH----HHHHHHHHHh
Confidence            677778899999999888899999999986 68899999999998 999999999    8999888653

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.57  E-value=8.8e-05  Score=63.62  Aligned_cols=53  Identities=15%  Similarity=0.033  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       194 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  246 (267)
T PRK14237        194 LDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKT  246 (267)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            799999999999999964 789999999986 67889999999998 999999998

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.56  E-value=8.1e-05  Score=69.76  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++|.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus       171 LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~  224 (510)
T PRK15439        171 LTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKT  224 (510)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCh
Confidence            7999999999999999888999999999986 56788999999998 999999987

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=97.56  E-value=0.00011  Score=63.07  Aligned_cols=54  Identities=11%  Similarity=0.102  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       174 LD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~  227 (264)
T PRK13546        174 GDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGEL  227 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999878999999999975 66788999999998 999999987

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.56  E-value=8.5e-05  Score=66.86  Aligned_cols=54  Identities=15%  Similarity=0.165  Sum_probs=50.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       195 LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~  249 (382)
T TIGR03415       195 LDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP  249 (382)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            799999999999999987 4999999999986 67899999999998 999999998

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=97.55  E-value=8.2e-05  Score=64.29  Aligned_cols=53  Identities=21%  Similarity=0.287  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|+|||+++|++.. +.. +|++++|.+ |+++..|++
T Consensus       175 LD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~-G~i~~~g~~  228 (280)
T PRK13633        175 LDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDS-GKVVMEGTP  228 (280)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEEC-CEEEEecCH
Confidence            799999999999999987 59999999999974 444 999999998 999999988

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.55  E-value=9.3e-05  Score=62.83  Aligned_cols=53  Identities=11%  Similarity=0.075  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       179 LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  231 (252)
T PRK14256        179 LDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGET  231 (252)
T ss_pred             CCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 689999999985 67788999999997 999999987

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=97.54  E-value=0.0007  Score=65.35  Aligned_cols=53  Identities=17%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++.++|+|+++++|++.  ..+.+|++++|.+ |+++..|++
T Consensus       175 LD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i~~~g~~  227 (648)
T PRK10535        175 LDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEIVRNPPA  227 (648)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEeecCc
Confidence            7999999999999999878999999999986  3467999999998 999999998

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.53  E-value=0.0001  Score=69.48  Aligned_cols=54  Identities=13%  Similarity=0.164  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|++++++ |.|||+++|++. .+.+.+|++++|.+ |++++.|++
T Consensus       187 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~  241 (529)
T PRK15134        187 LDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRA  241 (529)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999875 999999999986 56688999999998 999999987

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.53  E-value=9.6e-05  Score=68.93  Aligned_cols=54  Identities=15%  Similarity=0.089  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++++.|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       166 LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  219 (490)
T PRK10938        166 LDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGER  219 (490)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999888999999999985 67788999999998 999999987

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.52  E-value=0.00011  Score=62.18  Aligned_cols=53  Identities=13%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       177 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  229 (250)
T PRK14240        177 LDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT  229 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999964 899999999975 67788999999998 999999887

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.51  E-value=0.00011  Score=66.60  Aligned_cols=54  Identities=20%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~  249 (400)
T PRK10070        195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP  249 (400)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence            799999999999999986 5999999999986 67789999999998 999999987

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.50  E-value=0.00011  Score=68.79  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       436 LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~  489 (506)
T PRK13549        436 IDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLIN  489 (506)
T ss_pred             cCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecc
Confidence            7999999999999999988999999999985 67789999999998 999999988

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.50  E-value=0.00013  Score=62.90  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc---------CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK---------QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~---------~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|+         + |+++..|++
T Consensus       192 LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~-G~~~~~g~~  253 (274)
T PRK14265        192 LDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRR-GKLVEFSPT  253 (274)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCH
Confidence            799999999999999975 789999999985 6778899999997         5 999999998

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=97.49  E-value=0.00011  Score=68.74  Aligned_cols=54  Identities=13%  Similarity=0.252  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       174 LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~  227 (506)
T PRK13549        174 LTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPA  227 (506)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeeccc
Confidence            7999999999999999888999999999986 66788999999998 999999998

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=97.49  E-value=0.00013  Score=62.74  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=47.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |+++..|++
T Consensus       173 LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~  225 (272)
T PRK15056        173 VDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPT  225 (272)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCH
Confidence            7999999999999999888999999999985 677889999777 6 899999987

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.49  E-value=0.00012  Score=62.79  Aligned_cols=53  Identities=17%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ +.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       194 LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~  246 (267)
T PRK14235        194 LDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDT  246 (267)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 789999999986 56788999999998 999999987

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.49  E-value=0.00012  Score=63.24  Aligned_cols=53  Identities=15%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+.+.|+++++ .|.|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus       174 LD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g~~  227 (282)
T PRK13640        174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQGSP  227 (282)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 49999999999974 4 57999999998 999999998

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.49  E-value=0.00013  Score=62.36  Aligned_cols=53  Identities=19%  Similarity=0.110  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       187 LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~  239 (260)
T PRK10744        187 LDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNT  239 (260)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999964 789999999985 56788999999998 999999987

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.48  E-value=0.00015  Score=61.83  Aligned_cols=54  Identities=20%  Similarity=0.154  Sum_probs=48.8

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ .|.|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus       164 LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~  218 (257)
T PRK11247        164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV  218 (257)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence            799999999999999976 5899999999986 56788999999998 999998876

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.48  E-value=0.00013  Score=64.53  Aligned_cols=53  Identities=15%  Similarity=0.082  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       256 LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~i~e~g~~  308 (329)
T PRK14257        256 LDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GWIEEAGET  308 (329)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 799999999985 56677999999998 999999998

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.48  E-value=0.00012  Score=62.85  Aligned_cols=53  Identities=11%  Similarity=-0.001  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+++..|++
T Consensus       198 LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~  250 (271)
T PRK14238        198 LDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDT  250 (271)
T ss_pred             CCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 799999999986 56788999999998 999999987

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.48  E-value=0.00015  Score=68.61  Aligned_cols=53  Identities=21%  Similarity=0.389  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++...|+|+|+++|+++  ..+.+|++++|.+ |+++..|+.
T Consensus       485 LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~  537 (544)
T TIGR01842       485 LDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD-GRIARFGER  537 (544)
T ss_pred             cCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCH
Confidence            7999999999999999767999999999985  4678999999998 999999987

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.47  E-value=0.00013  Score=68.17  Aligned_cols=54  Identities=26%  Similarity=0.382  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       172 LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~  225 (501)
T PRK10762        172 LTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREV  225 (501)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence            7999999999999999888999999999985 67788999999998 999999998

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.47  E-value=0.00013  Score=61.11  Aligned_cols=52  Identities=21%  Similarity=0.329  Sum_probs=46.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ |+|||+++|++. ++ ..+|++++|.+ |+++..|+.
T Consensus       169 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~  220 (234)
T cd03251         169 LDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH  220 (234)
T ss_pred             CCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence            799999999999999975 899999999996 44 44999999998 899998887

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.46  E-value=0.00012  Score=70.23  Aligned_cols=54  Identities=15%  Similarity=0.124  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|++++++ |.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       494 LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~  548 (623)
T PRK10261        494 LDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR  548 (623)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence            7999999999999999874 999999999986 67788999999998 999999998

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.46  E-value=0.00018  Score=60.46  Aligned_cols=53  Identities=25%  Similarity=0.335  Sum_probs=47.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ +|+|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus       163 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~~  216 (236)
T TIGR03864       163 LDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGAA  216 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCCH
Confidence            799999999999999986 69999999999964 4 35999999998 999998887

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.46  E-value=0.00015  Score=61.61  Aligned_cols=53  Identities=13%  Similarity=0.048  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++. ++.|||+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       178 LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~  230 (251)
T PRK14249        178 LDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRT  230 (251)
T ss_pred             CCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCH
Confidence            79999999999999995 5899999999986 56688999999998 999999987

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00015  Score=61.51  Aligned_cols=53  Identities=15%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ |+|||+++|++. ++.+.+|+++++.+ |+++..|++
T Consensus       177 LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~  229 (250)
T PRK14266        177 LDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLT  229 (250)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCH
Confidence            799999999999999965 899999999985 67888999999998 999999987

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00016  Score=61.87  Aligned_cols=53  Identities=15%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc--------CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK--------QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~--------~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ ++|||+++|++. ++.+.+|++++|.        + |+++..|++
T Consensus       180 LD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~-G~i~~~g~~  240 (261)
T PRK14263        180 LDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRT-GYLVEMGPT  240 (261)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecccccccCC-ceEEEeCCH
Confidence            799999999999999964 789999999986 5778899999996        5 999999987

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.44  E-value=0.00014  Score=68.29  Aligned_cols=54  Identities=15%  Similarity=0.221  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++++.|+++++ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       458 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~  512 (520)
T TIGR03269       458 MDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP  512 (520)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999987 4999999999986 67788999999998 999999987

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.44  E-value=0.00017  Score=61.87  Aligned_cols=54  Identities=13%  Similarity=0.046  Sum_probs=47.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC----------CCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ----------GRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~----------gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+          +|+++..|++
T Consensus       185 LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~  248 (269)
T PRK14259        185 LDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNET  248 (269)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCH
Confidence            799999999999999965 789999999985 67889999999995          2678999988

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.44  E-value=0.00015  Score=62.77  Aligned_cols=53  Identities=11%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       213 LD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~  265 (286)
T PRK14275        213 LDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPT  265 (286)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999975 689999999986 56788999999998 999999987

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=97.43  E-value=0.00016  Score=65.08  Aligned_cols=54  Identities=19%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~  234 (377)
T PRK11607        180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEP  234 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCH
Confidence            799999999999999977 5999999999986 78899999999998 999999998

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=97.43  E-value=0.00017  Score=62.18  Aligned_cols=57  Identities=12%  Similarity=0.252  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+.+.|+++. .++|||+++|++. .+. .+|++++|.+ |+++..|++    +++..
T Consensus       169 LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~----~~l~~  225 (275)
T cd03289         169 LDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSI----QKLLN  225 (275)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCH----HHHhh
Confidence            79999999999999875 4899999999984 454 5999999998 999999999    66654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.43  E-value=0.00016  Score=67.64  Aligned_cols=54  Identities=11%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~  479 (501)
T PRK10762        426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTR  479 (501)
T ss_pred             CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecc
Confidence            7999999999999999888999999999985 67889999999998 999999988

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.43  E-value=0.00023  Score=58.99  Aligned_cols=62  Identities=13%  Similarity=0.114  Sum_probs=51.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL   69 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~   69 (265)
                      ||+.++..+.+.|.+..+ ++++|+++|++. ++.+.+|++++|.+ |++++.|+.    +++.++++.
T Consensus       135 lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~----~~~~~~~~~  196 (213)
T PRK15177        135 GDNATQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDL----AQATALFEQ  196 (213)
T ss_pred             CCHHHHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCH----HHHHHHHHH
Confidence            588889999998865443 568999999986 56778999999998 999999999    888887754

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.42  E-value=0.00017  Score=61.19  Aligned_cols=53  Identities=17%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++.+ +.|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       178 LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  230 (251)
T PRK14251        178 LDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPT  230 (251)
T ss_pred             CCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence            799999999999999964 789999999986 57788999999998 999999887

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.42  E-value=0.00015  Score=68.36  Aligned_cols=54  Identities=9%  Similarity=0.149  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~  510 (529)
T PRK15134        456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC  510 (529)
T ss_pred             cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence            7999999999999999874 999999999985 57788999999998 999999987

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00016  Score=61.44  Aligned_cols=53  Identities=17%  Similarity=0.065  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       180 LD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~  232 (253)
T PRK14261        180 LDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKT  232 (253)
T ss_pred             CCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCH
Confidence            799999999999999976 689999999986 56688999999998 999999987

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00018  Score=61.00  Aligned_cols=53  Identities=13%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       179 LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  231 (252)
T PRK14255        179 LDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADT  231 (252)
T ss_pred             CCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 589999999985 67788999999998 999999987

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00019  Score=61.23  Aligned_cols=53  Identities=11%  Similarity=0.102  Sum_probs=47.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc------CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK------QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~------~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|+++++.      + |+++..|++
T Consensus       179 LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~-g~i~~~~~~  237 (258)
T PRK14241        179 LDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKP-GRLVEIDDT  237 (258)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCC-ceEEecCCH
Confidence            799999999999999965 689999999986 5778899999997      5 999999987

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00019  Score=61.30  Aligned_cols=54  Identities=17%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC----CCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ----GRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~----gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|..    .|+++..|++
T Consensus       181 LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~  238 (259)
T PRK14260        181 LDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVT  238 (259)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence            799999999999999975 699999999986 77889999999972    3899999998

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00018  Score=67.13  Aligned_cols=54  Identities=24%  Similarity=0.372  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       165 LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~  218 (491)
T PRK10982        165 LTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPL  218 (491)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecCh
Confidence            7999999999999999888999999999985 67788999999998 999999987

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.39  E-value=0.00016  Score=60.06  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      |.+..+.++++.++++.+ .|.||+++-|+.. -+++++|+|++|+. |+++..|+|
T Consensus       180 ln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P  234 (250)
T COG0411         180 LNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTP  234 (250)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCH
Confidence            456778999999999998 5799999999986 69999999999998 999999999

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.39  E-value=0.0002  Score=61.78  Aligned_cols=53  Identities=19%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ +.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       194 LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~  246 (276)
T PRK14271        194 LDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPT  246 (276)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 589999999985 67788999999998 999999987

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=97.38  E-value=0.00023  Score=66.85  Aligned_cols=60  Identities=22%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRY   66 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~y   66 (265)
                      ||+.+...+.+.|+++++ .|.|||+++|++. .+.+.+|++++|.+ |++++.|++    ++..+.
T Consensus       199 LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~----~~~~~~  259 (520)
T TIGR03269       199 LDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP----DEVVAV  259 (520)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH----HHHHHH
Confidence            799999999999999976 5999999999986 46688999999998 899999887    555443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.37  E-value=0.00023  Score=60.98  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=48.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |+++..|+.
T Consensus       192 LD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~  244 (265)
T PRK14252        192 LDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGAT  244 (265)
T ss_pred             CCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999976 689999999985 67788999999998 999999987

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.36  E-value=0.0002  Score=66.96  Aligned_cols=55  Identities=16%  Similarity=0.315  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLG   57 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~   57 (265)
                      ||+.+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++.
T Consensus       172 LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~  226 (500)
T TIGR02633       172 LTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMS  226 (500)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCcc
Confidence            7999999999999999888999999999985 67788999999998 8999999873

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.36  E-value=0.0003  Score=58.73  Aligned_cols=52  Identities=19%  Similarity=0.374  Sum_probs=46.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+++.|+++. .|+|||+++|++. ++ +.+|++++|.+ |++++.|+.
T Consensus       170 LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~  221 (229)
T cd03254         170 IDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTH  221 (229)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCH
Confidence            79999999999999996 4899999999986 34 56999999998 999998876

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.36  E-value=0.00016  Score=65.89  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL   69 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~   69 (265)
                      ||+.....+.+.+.++.++|.|+|+++|.|+  +....|+|++|++ |++.-+||+    +++......
T Consensus       503 LD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r----~eVLa~~~~  564 (580)
T COG4618         503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQD-GRIAAFGPR----EEVLAKVLR  564 (580)
T ss_pred             cchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecC-ChHHhcCCH----HHHHHHhcC
Confidence            7999999999999999999999999999985  7899999999997 999999999    777776643

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.36  E-value=0.00022  Score=61.03  Aligned_cols=53  Identities=9%  Similarity=0.031  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc---------CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK---------QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~---------~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|+         + |+++..|++
T Consensus       182 LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~-g~i~~~~~~  243 (264)
T PRK14243        182 LDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRY-GYLVEFDRT  243 (264)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCH
Confidence            799999999999999976 589999999985 7889999999998         6 899999987

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.35  E-value=0.00026  Score=60.87  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+++.|++++++ ++|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus       173 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~~  226 (271)
T PRK13632        173 LDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGKP  226 (271)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecCH
Confidence            7999999999999999875 5999999999964 4 47999999998 999999987

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.34  E-value=0.00026  Score=66.39  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+++.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       440 LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~  493 (510)
T PRK09700        440 IDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN  493 (510)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence            7999999999999999888999999999985 67788999999998 899998876

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.34  E-value=0.00022  Score=66.89  Aligned_cols=54  Identities=17%  Similarity=0.115  Sum_probs=50.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..|.+
T Consensus       434 LD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~  487 (510)
T PRK15439        434 VDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTG  487 (510)
T ss_pred             cChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence            7999999999999999988999999999985 68889999999997 999998877

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.33  E-value=0.00026  Score=67.42  Aligned_cols=52  Identities=17%  Similarity=0.276  Sum_probs=47.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++. .++|+|+++|++  +..+.+|+|++|++ |+++..|+.
T Consensus       511 LD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~-g~i~e~g~~  562 (582)
T PRK11176        511 LDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVED-GEIVERGTH  562 (582)
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            79999999999999985 479999999998  45788999999998 999999997

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.33  E-value=0.00025  Score=66.33  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=50.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLG   57 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~   57 (265)
                      ||..+..++++.|+++++.|.|||+++|++. ++.+.+|+++++.+ |++++.|.++
T Consensus       427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~  481 (501)
T PRK11288        427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELARE  481 (501)
T ss_pred             CCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence            7999999999999999988999999999985 67889999999998 9999999883

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.32  E-value=0.00016  Score=69.35  Aligned_cols=54  Identities=17%  Similarity=0.267  Sum_probs=49.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++.++|+++++ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       199 LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~-G~i~~~g~~  253 (623)
T PRK10261        199 LDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQ-GEAVETGSV  253 (623)
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeC-CeecccCCH
Confidence            799999999999999987 4999999999985 56788999999998 999998887

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.32  E-value=0.00033  Score=56.30  Aligned_cols=65  Identities=15%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhCC-CeEEEEecCCCHHHHHhhhhhhhccCCCeEEEe--cCCCCCcchHHHHH
Q 039187            1 LDARAASIVIRTVRNTVDTG-RTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYV--GLLGRHSCHLTRYF   67 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~-~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~--G~~~~~~~~~~~yF   67 (265)
                      ||..+...+.+.++++++++ .|||+++|++. ++.+.+|++++|.+ +-.+|.  |+++..-+.+-.|+
T Consensus       102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~~  169 (177)
T cd03222         102 LDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPKGTREGINRFL  169 (177)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCcchhHHHHHHH
Confidence            79999999999999998764 99999999984 56678999999997 566654  77743323444455

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.31  E-value=0.00028  Score=60.88  Aligned_cols=53  Identities=19%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++. |.|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus       171 LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~~g~~  224 (277)
T PRK13642        171 LDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIKEAAP  224 (277)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999885 9999999999875 4 35999999998 999999987

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.30  E-value=0.00027  Score=75.28  Aligned_cols=62  Identities=26%  Similarity=0.332  Sum_probs=57.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHh
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFK   68 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~   68 (265)
                      ||+.++.++.+.|++++++|+|||+|+|++. ++..++|++++|.+ |+++..|++    +++.+.|.
T Consensus      2101 LDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~----q~Lk~~~g 2162 (2272)
T TIGR01257      2101 MDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI----QHLKSKFG 2162 (2272)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHHHhC
Confidence            7999999999999999888999999999985 78889999999998 999999999    88887774

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=97.29  E-value=0.00028  Score=59.25  Aligned_cols=52  Identities=23%  Similarity=0.365  Sum_probs=46.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ |+|||+++|++.. + ..+|++++|.+ |+++..|+.
T Consensus       168 LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~-g~i~~~~~~  219 (236)
T cd03253         168 LDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKD-GRIVERGTH  219 (236)
T ss_pred             CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEeeCCH
Confidence            799999999999999987 9999999999863 4 45999999998 999998876

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.29  E-value=0.0003  Score=67.14  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=47.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++. +++|+|+++|+++  ..+.+|+|++|.+ |+++..|+.
T Consensus       516 LD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~-G~i~e~G~~  567 (588)
T PRK11174        516 LDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD-GQIVQQGDY  567 (588)
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-CeEeecCCH
Confidence            79999999999999985 5899999999994  5678999999998 999999987

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.29  E-value=0.00032  Score=59.81  Aligned_cols=53  Identities=11%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++.+ +.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       184 LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~  236 (257)
T PRK14246        184 IDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSS  236 (257)
T ss_pred             CCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999965 699999999985 67788999999997 999999987

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.26  E-value=0.00037  Score=66.55  Aligned_cols=52  Identities=13%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ ++|+|+++|+|  +....+|+|++|.+ |+++..|+.
T Consensus       507 LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~-G~i~~~G~~  558 (592)
T PRK10790        507 IDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHR-GQAVEQGTH  558 (592)
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999865 79999999998  45678999999998 999999998

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.23  E-value=0.00046  Score=57.91  Aligned_cols=54  Identities=17%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+-+..++=+-++++-+ .|+|||.++|+.. |.+.+.|+|.+|+. |+++-.|.|
T Consensus       166 LDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q~~~P  220 (309)
T COG1125         166 LDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQYDTP  220 (309)
T ss_pred             cChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEEeCCH
Confidence            799999999999999987 6999999999986 78899999999997 999999998

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.22  E-value=0.00041  Score=67.51  Aligned_cols=57  Identities=18%  Similarity=0.325  Sum_probs=50.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+..++.+.|+++.+ ++|+|+++|+++  ..+.+|+|++|.+ |+++..|+.    +++.+
T Consensus       632 LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~----~eLl~  688 (694)
T TIGR03375       632 MDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPK----DQVLE  688 (694)
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCH----HHHHH
Confidence            799999999999999864 899999999995  4688999999998 999999998    66654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=97.21  E-value=0.00037  Score=59.21  Aligned_cols=53  Identities=11%  Similarity=0.147  Sum_probs=47.0

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|.  ++++..|++
T Consensus       151 LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~--~~i~~~g~~  204 (251)
T PRK09544        151 VDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN--HHICCSGTP  204 (251)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC--CceEeeCCH
Confidence            7999999999999999875 899999999986 6778899999995  368888987

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.21  E-value=0.00044  Score=67.27  Aligned_cols=52  Identities=27%  Similarity=0.443  Sum_probs=47.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++++.|+++. .++|+|+++|+++  ..+.+|++++|++ |+++..|+.
T Consensus       624 LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~-G~i~~~g~~  675 (694)
T TIGR01846       624 LDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK-GQIAESGRH  675 (694)
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC-CEEEEeCCH
Confidence            79999999999999985 5899999999985  4567999999998 999999997

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.21  E-value=0.00043  Score=59.01  Aligned_cols=52  Identities=21%  Similarity=0.282  Sum_probs=46.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++. .+.|||+++|++.. +. .+|++++|.+ |+++..|++
T Consensus       187 LD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~-G~i~~~g~~  238 (257)
T cd03288         187 IDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSR-GILVECDTP  238 (257)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEEC-CEEEEeCCH
Confidence            79999999999999975 48999999999974 44 4999999998 999999987

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.21  E-value=0.00087  Score=53.25  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||-+....+-..|.+++..|.+||++-|+.+. ..+..|++.+|++ |+++.+|.+    +++.
T Consensus       163 LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~r-G~l~~~G~~----~eVl  220 (248)
T COG4138         163 LDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKR-GKLLASGRR----EEVL  220 (248)
T ss_pred             hhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhc-CeEEeecch----hhhc
Confidence            67777888889999999999999999999984 5688999999999 999999999    5554

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.20  E-value=0.00034  Score=67.70  Aligned_cols=57  Identities=23%  Similarity=0.385  Sum_probs=51.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+..++++.|+++.. |+|+|+++|.++  ..+.+|+|++|.+ |+++..|+.    +++..
T Consensus       640 LD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~----~ell~  696 (709)
T COG2274         640 LDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSH----EELLA  696 (709)
T ss_pred             cCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccC-CceeccCCH----HHHHH
Confidence            799999999999999875 799999999986  5788999999998 999999998    66654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.20  E-value=0.00041  Score=67.39  Aligned_cols=50  Identities=20%  Similarity=0.333  Sum_probs=45.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++   ++|+|+++|+++  ..+.+|+|++|++ |+++..|+.
T Consensus       619 LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~-G~iv~~G~~  668 (686)
T TIGR03797       619 LDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA-GRVVQQGTY  668 (686)
T ss_pred             CCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-CEEEEECCH
Confidence            7999999999999986   689999999984  5678999999998 999999998

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.18  E-value=0.00044  Score=64.68  Aligned_cols=54  Identities=9%  Similarity=0.128  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+++.|+++++.|.|||+++|++. ++.+.+|++++|.+ |+++..++.
T Consensus       434 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~  487 (500)
T TIGR02633       434 VDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN  487 (500)
T ss_pred             cCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence            7999999999999999888999999999985 67889999999998 899988876

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.17  E-value=0.00047  Score=60.35  Aligned_cols=53  Identities=17%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhh-hhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDEL-FLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~-~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ +.|||+++|++. .+.+.+|++ ++|.+ |+++..|++
T Consensus       231 LD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~-G~i~~~g~~  284 (305)
T PRK14264        231 LDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTG-GELVEYDDT  284 (305)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecC-CEEEEeCCH
Confidence            799999999999999987 489999999986 567889996 56787 999999987

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.17  E-value=0.0006  Score=58.09  Aligned_cols=55  Identities=22%  Similarity=0.146  Sum_probs=48.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC-CCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ-GRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~-gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|.+ +|+++..++.
T Consensus       159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence            799999999999999965 6999999999986 67788999999983 3899988876

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=97.15  E-value=0.00052  Score=64.25  Aligned_cols=54  Identities=24%  Similarity=0.321  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..++.
T Consensus       171 LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~  224 (501)
T PRK11288        171 LSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFDD  224 (501)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCc
Confidence            7999999999999999888999999999986 66788999999998 899877664

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.14  E-value=0.00057  Score=64.92  Aligned_cols=57  Identities=19%  Similarity=0.343  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+.+.++++. +|+|+++..|+++ .+ ..+|+|++|.+ |+++..|..    +++..
T Consensus       496 lD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti-~~aD~IiVl~~-G~i~e~G~h----~eLl~  552 (567)
T COG1132         496 LDTETEALIQDALKKLL-KGRTTLIIAHRLS-TI-KNADRIIVLDN-GRIVERGTH----EELLA  552 (567)
T ss_pred             cCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HH-HhCCEEEEEEC-CEEEEecCH----HHHHH
Confidence            79999999999999887 5789999999995 34 44999999998 999999998    66654

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.12  E-value=0.00061  Score=64.79  Aligned_cols=52  Identities=23%  Similarity=0.360  Sum_probs=47.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++. +|+|+|+++|+++  ..+.+|++++|.+ |+++..|+.
T Consensus       482 LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~  533 (569)
T PRK10789        482 VDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNH  533 (569)
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCH
Confidence            79999999999999985 5899999999984  4577999999998 999999987

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.10  E-value=0.00069  Score=64.48  Aligned_cols=52  Identities=25%  Similarity=0.365  Sum_probs=46.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++. +++|+|+++|+++.  .+.+|++++|.+ |+++..|+.
T Consensus       506 lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~-G~i~~~g~~  557 (574)
T PRK11160        506 LDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDN-GQIIEQGTH  557 (574)
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeC-CeEEEeCCH
Confidence            79999999999999986 48999999999963  467999999998 999999987

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.09  E-value=0.00064  Score=63.46  Aligned_cols=54  Identities=9%  Similarity=0.119  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++++.|+++.+.|.|||+++|++. ++.+.+|++++|.+ |+++..+++
T Consensus       422 LD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~  475 (491)
T PRK10982        422 IDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT  475 (491)
T ss_pred             cChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence            7999999999999999888999999999985 67789999999998 999988877

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.08  E-value=0.00064  Score=66.36  Aligned_cols=54  Identities=22%  Similarity=0.335  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+..++++.|++   .++|+|+++|+++  ....+|+|++|.+ |+++..|+.    +++.
T Consensus       646 LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~----~~Ll  699 (710)
T TIGR03796       646 LDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTH----EELW  699 (710)
T ss_pred             CCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCH----HHHH
Confidence            799999999999987   5899999999985  4577999999998 999999998    6665

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.00067  Score=62.35  Aligned_cols=57  Identities=19%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.|..+++++|.+-++ |+|+|+++|....  .+.||+|++|.+ |+++..|..    +++..
T Consensus       505 LD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~----~~Ll~  561 (573)
T COG4987         505 LDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTH----AELLA  561 (573)
T ss_pred             CChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCH----Hhhhc
Confidence            799999999999998775 9999999999863  588999999998 999999988    55543

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.06  E-value=0.00081  Score=64.16  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++. .++|+|+++|+++  ..+.+|++++|.+ |+++..|+.
T Consensus       502 LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~-G~i~~~g~~  553 (585)
T TIGR01192       502 LDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ-GRLIEKGSF  553 (585)
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC-CEEEEECCH
Confidence            79999999999999884 5899999999984  3477999999998 999999986

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.05  E-value=0.00063  Score=63.13  Aligned_cols=54  Identities=17%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||...+.+++++|+++.+ .|.|.+.+.|+.. -+-.++|+|.+|.. |+++..||+
T Consensus       460 LDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~  514 (539)
T COG1123         460 LDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT  514 (539)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence            799999999999999988 5999999999986 57788999999998 999999987

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.05  E-value=0.00062  Score=67.68  Aligned_cols=53  Identities=25%  Similarity=0.332  Sum_probs=48.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~   56 (265)
                      ||+.+..++++.|+++.+.|.|||++.|++.  ....+|++++|      . ||++++.|++
T Consensus       520 LD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~--~i~~aD~vi~LgpgaG~~-~G~Iv~~g~~  578 (924)
T TIGR00630       520 LHQRDNERLINTLKRLRDLGNTVIVVEHDEE--TIRAADYVIDIGPGAGIH-GGEVVASGTP  578 (924)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCEEEEecccccCC-CCEEeeccCH
Confidence            7999999999999999889999999999975  34689999999      5 4999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.04  E-value=0.00068  Score=72.43  Aligned_cols=60  Identities=18%  Similarity=0.208  Sum_probs=53.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYF   67 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF   67 (265)
                      ||+.++.++.+.|+++. +|+|||+++|++. ++...+|++++|++ |+++..|++    ..+++-|
T Consensus      1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~----~~Lk~~~ 1151 (2272)
T TIGR01257      1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP----LFLKNCF 1151 (2272)
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH----HHHHHhc
Confidence            79999999999999995 5999999999985 67788999999998 999999998    7777655

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.01  E-value=0.00082  Score=58.22  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=46.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhh-hccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELF-LMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~-~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|+++++ +.|||+++|++. ++.+.+|+++ +|.+ |+++..|++
T Consensus       211 LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~  264 (285)
T PRK14254        211 LDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDT  264 (285)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCH
Confidence            799999999999999986 489999999985 6677899975 5787 999999987

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.01  E-value=0.00084  Score=65.50  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=48.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+..++.+.|+++  +|+|+|+++|+++  ..+.+|+|++|++ |+++..|+.    +++.
T Consensus       642 LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~----~~L~  696 (708)
T TIGR01193       642 LDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSH----DELL  696 (708)
T ss_pred             CCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCH----HHHH
Confidence            7999999999999985  5899999999985  5688999999998 999999998    5554

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=96.99  E-value=0.00081  Score=67.02  Aligned_cols=53  Identities=23%  Similarity=0.307  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~   56 (265)
                      ||+....++.+.|+++.+.|.|||++.|++. ++ ..+|++++|      .. |++++.|++
T Consensus       522 Ld~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~-G~iv~~g~~  580 (943)
T PRK00349        522 LHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHG-GEVVASGTP  580 (943)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCC-CEEeeccCH
Confidence            7999999999999999888999999999986 34 569999999      64 999999998

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=96.98  E-value=0.00099  Score=63.58  Aligned_cols=52  Identities=19%  Similarity=0.309  Sum_probs=46.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++. .++|+|+++|+|+  ..+.+|++++|.+ |+++..|+.
T Consensus       502 LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~  553 (588)
T PRK13657        502 LDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSF  553 (588)
T ss_pred             CCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCH
Confidence            79999999999999885 4899999999984  5688999999998 999999986

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=96.93  E-value=0.0011  Score=63.03  Aligned_cols=52  Identities=21%  Similarity=0.340  Sum_probs=47.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++.++++.|++++ .++|+|+++|+|  +..+.+|+|+.+.+ |+++-.|+.
T Consensus       500 LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~-g~i~~~g~~  551 (571)
T TIGR02203       500 LDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDD-GRIVERGTH  551 (571)
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeC-CEEEeeCCH
Confidence            79999999999999885 579999999998  46788999999997 999998887

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.0012  Score=60.91  Aligned_cols=57  Identities=21%  Similarity=0.431  Sum_probs=50.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.|..++++.+++ ..+|+|+|++.|..  ++...||+|++|.+ |++.-.|+.    +++..
T Consensus       518 LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l--~ll~~~DkI~~l~n-G~v~e~gth----~ell~  574 (591)
T KOG0057|consen  518 LDSETEREILDMIMD-VMSGRTVIMIVHRL--DLLKDFDKIIVLDN-GTVKEYGTH----SELLA  574 (591)
T ss_pred             cchhhHHHHHHHHHH-hcCCCeEEEEEecc--hhHhcCCEEEEEEC-CeeEEeccH----HHHhh
Confidence            799999999999999 34699999999976  57889999999999 999999998    77765

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=96.91  E-value=0.0012  Score=62.78  Aligned_cols=52  Identities=23%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+++.|+++. .++|+|+++|++  +..+.+|+++.+.+ |+++..|+.
T Consensus       507 lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~-g~~~~~g~~  558 (576)
T TIGR02204       507 LDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQ-GRIVAQGTH  558 (576)
T ss_pred             cCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEeeecH
Confidence            79999999999999985 589999999998  45688999999998 999999987

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=96.88  E-value=0.03  Score=47.85  Aligned_cols=146  Identities=10%  Similarity=0.064  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH-----------
Q 039187          116 YFTQFMACLWKQWWSYWQNPA-YTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS-----------  183 (265)
Q Consensus       116 ~~~Q~~~L~~R~~~~~~R~~~-~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~-----------  183 (265)
                      .++....|.+|+.|...|+.. ...=.++.++++.++.+.+|...-..+. ..--..-..|.+......           
T Consensus        16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~-~~~~~~l~~G~~~w~f~~~~i~~~~~s~~   94 (263)
T COG1682          16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPG-LNFLAYLLAGLILWFFFSEAISEGAGSVV   94 (263)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence            667788999999999886553 3444566666666666666654433211 111222222322111110           


Q ss_pred             ---------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccccccee--------------------------
Q 039187          184 ---------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTASKFFR--------------------------  222 (265)
Q Consensus       184 ---------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~~~~~~--------------------------  222 (265)
                                     +.+++++.++-...+...+...+.-+..+.+ +......                          
T Consensus        95 ~n~~li~k~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fR  173 (263)
T COG1682          95 ANAALIKKINFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SWHWLLLLPALLLLILFSVGLGLILASLGVRFR  173 (263)
T ss_pred             hhHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence                           6677777776666665555554444443333 3221111                          


Q ss_pred             --------------eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCCC
Q 039187          223 --------------LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMRR  263 (265)
Q Consensus       223 --------------l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~~  263 (265)
                                    ..+|.+.+.+++|..++++..+||+.+-.|..=..-+++..
T Consensus       174 D~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~  228 (263)
T COG1682         174 DLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDV  228 (263)
T ss_pred             cHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCc
Confidence                          78899999999999999999999999999998776666554

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=96.87  E-value=0.0016  Score=55.15  Aligned_cols=69  Identities=16%  Similarity=0.183  Sum_probs=50.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE--EecCCCCCcchHHHHHhhCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI--YVGLLGRHSCHLTRYFKLLL   71 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~--y~G~~~~~~~~~~~yF~~~g   71 (265)
                      ||+.+...+.+.|+++++ .|+|||+++|++. .+...+|++++|.. +..+  ..+++....+.+..|++..+
T Consensus       146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~~  217 (246)
T cd03237         146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNLD  217 (246)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHCC
Confidence            799999999999999987 5899999999985 66778999999974 4333  33444211124556666655

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=96.87  E-value=0.0015  Score=65.15  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||..+...+++.|+++.+.|.|||++.|++.  ..+.+|+++.|.     +||++++.|++
T Consensus       864 LD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~  922 (943)
T PRK00349        864 LHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP  922 (943)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence            7999999999999999888999999999984  346799999994     35999999998

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.86  E-value=0.0011  Score=56.97  Aligned_cols=54  Identities=30%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..-..++-+-|+++.++ |.|++.++|++. |+++++|+|++|++ |++.-.||+
T Consensus       168 LDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p  222 (345)
T COG1118         168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPP  222 (345)
T ss_pred             hhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCH
Confidence            6888888999999999885 999999999985 89999999999999 999999999

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=96.85  E-value=0.0013  Score=69.08  Aligned_cols=54  Identities=19%  Similarity=0.326  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++++.|.|||++.|++.  +.+.+|++++|.     .||++++.|++
T Consensus       509 LD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~  567 (1809)
T PRK00635        509 LHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSP  567 (1809)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCH
Confidence            7999999999999999988999999999985  679999999996     34899999987

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0015  Score=60.67  Aligned_cols=52  Identities=17%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..+...+.+.|.++++ ++|+++++|++.  .....|+|++|++ |+++..|..
T Consensus       487 LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~-G~l~~~g~~  538 (559)
T COG4988         487 LDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN-GRLVEQGTH  538 (559)
T ss_pred             CCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC-CceeccCCH
Confidence            799999999999999997 499999999985  4577999999998 999999987

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=96.77  E-value=0.0021  Score=55.64  Aligned_cols=52  Identities=10%  Similarity=0.261  Sum_probs=43.8

Q ss_pred             CchHHHHHHHHHH-HHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTV-RNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l-~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.+ +++. .+.|||+++|++.. + ..+|++++|.+ |+++..|++
T Consensus       190 LD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~  242 (282)
T cd03291         190 LDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTF  242 (282)
T ss_pred             CCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence            7899999898865 5554 57999999999864 4 67999999998 999999997

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=96.73  E-value=0.0022  Score=63.87  Aligned_cols=54  Identities=20%  Similarity=0.272  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++.+.|.|||++.|++.  ..+.+|+++.|.     +||++++.|++
T Consensus       862 LD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~  920 (924)
T TIGR00630       862 LHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP  920 (924)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence            7999999999999999888999999999985  346799999994     35999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.64  E-value=0.0027  Score=50.72  Aligned_cols=54  Identities=19%  Similarity=0.290  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.---++++.+++||+.|||.++++|...- .-+.-.+++.|.+ |.+-..|||
T Consensus       183 LDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P  236 (256)
T COG4598         183 LDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPP  236 (256)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCCh
Confidence            78888999999999999999999999999864 4577899999999 999999999

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.63  E-value=0.0016  Score=55.49  Aligned_cols=52  Identities=15%  Similarity=0.123  Sum_probs=43.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL   55 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~   55 (265)
                      ||..+...+.+.|++++++|+|||+++|++. .+.+.+|++++|.  |++.+.|-
T Consensus       170 LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~  221 (255)
T cd03236         170 LDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGV  221 (255)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCccee
Confidence            7999999999999999888999999999985 5667899999996  45665443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=96.61  E-value=0.018  Score=48.83  Aligned_cols=39  Identities=21%  Similarity=0.372  Sum_probs=35.2

Q ss_pred             eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCC
Q 039187          223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGM  261 (265)
Q Consensus       223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~  261 (265)
                      +++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+
T Consensus       213 ~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~  251 (286)
T COG0842         213 FLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGG  251 (286)
T ss_pred             HHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCC
Confidence            899999999999999999999999999999987655543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=96.53  E-value=0.0032  Score=58.06  Aligned_cols=54  Identities=15%  Similarity=0.289  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      |+...+.++.+.+++|.++|.+||.+.|... |+++.+|++.+|.. |+.+-.++.
T Consensus       176 Lt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~  229 (500)
T COG1129         176 LTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPT  229 (500)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeeccc
Confidence            5677889999999999999999999999985 99999999999998 999998883

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=96.50  E-value=0.0028  Score=61.93  Aligned_cols=55  Identities=25%  Similarity=0.372  Sum_probs=45.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+..++.+ ..  ...++|+|+++|+++  ..+.+|+|++|++ |+++..|+.    +++.+
T Consensus       648 LD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~----~eL~~  702 (711)
T TIGR00958       648 LDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTH----KQLME  702 (711)
T ss_pred             cCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCH----HHHHh
Confidence            78988888888 22  236899999999985  4678999999998 999999998    66553

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=96.44  E-value=0.0035  Score=50.91  Aligned_cols=54  Identities=20%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      .||-+-.++-+.+++|.++|.-|++|=|.-+ |.++.+||.+++.+ |+++..|.+
T Consensus       170 VDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p  223 (243)
T COG1137         170 VDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP  223 (243)
T ss_pred             CCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence            4788888999999999999999999999986 78899999999998 999999999

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.0061  Score=50.48  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=54.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhh--hhhhhccCCCeEEEecCCCCCcchHHHHHhhCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAF--DELFLMKQGRQEIYVGLLGRHSCHLTRYFKLLL   71 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~f--d~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~~g   71 (265)
                      ||-.+-..+.+.++.+.+.|++++++||+.  ++.+.-  |++.+|.+ |+++-.|.+     ++.++++.-|
T Consensus       175 LDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrIv~sG~~-----el~~~le~~g  239 (251)
T COG0396         175 LDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRIVKSGDP-----ELAEELEEKG  239 (251)
T ss_pred             ccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEEEecCCH-----HHHHHHHHhc
Confidence            677778889999999999999999999986  678887  99999998 999999986     7777777665

>PLN03232 ABC transporter C family member; Provisional

Probab=96.42  E-value=0.0039  Score=65.66  Aligned_cols=56  Identities=20%  Similarity=0.299  Sum_probs=48.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+...+.+.|++.. +++|+|++.|+++  ....+|+|++|++ |+++..|++    +++.
T Consensus      1402 LD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~-G~ivE~Gt~----~eLl 1457 (1495)
T PLN03232       1402 VDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS-GQVLEYDSP----QELL 1457 (1495)
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHH
Confidence            79999999999999874 5899999999985  3455999999998 999999999    6665

>PLN03130 ABC transporter C family member; Provisional

Probab=96.36  E-value=0.0041  Score=65.83  Aligned_cols=56  Identities=14%  Similarity=0.277  Sum_probs=49.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.|...+.+.|++.. +++|+|++.|+++.  ...+|+|++|++ |+++..|++    +++.
T Consensus      1405 LD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~-G~IvE~Gt~----~eLl 1460 (1622)
T PLN03130       1405 VDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDA-GRVVEFDTP----ENLL 1460 (1622)
T ss_pred             CCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEEC-CEEEEeCCH----HHHH
Confidence            79999999999999975 48999999999864  455999999998 999999999    6765

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.36  E-value=0.0036  Score=58.99  Aligned_cols=51  Identities=8%  Similarity=0.135  Sum_probs=44.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||+.+...+.+.|+++   +.|||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus       469 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~  520 (530)
T PRK15064        469 MDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY  520 (530)
T ss_pred             CCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence            7999999999999987   459999999985 67788999999998 8887 88876

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=96.30  E-value=0.0049  Score=65.06  Aligned_cols=57  Identities=14%  Similarity=0.284  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.|...+.+.|++.. +++|||++.|+++  ....+|+|++|++ |+++..|++    +++.+
T Consensus      1452 lD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~-G~IvE~G~~----~eLl~ 1508 (1522)
T TIGR00957      1452 VDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK-GEVAEFGAP----SNLLQ 1508 (1522)
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence            79999999999999864 5899999999985  3556999999998 999999998    66653

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=96.25  E-value=0.005  Score=65.01  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+...+.+.|++.. +++|||++.|+++  ....+|+|++|++ |+++..|++    +++.
T Consensus      1477 LD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~-G~VvE~Gt~----~eLl 1532 (1560)
T PTZ00243       1477 IDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH-GAVAEMGSP----RELV 1532 (1560)
T ss_pred             CCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEEEECCH----HHHH
Confidence            79999999999999864 5899999999984  5677999999998 999999998    6664

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.22  E-value=0.0062  Score=51.68  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||...+.++.++|+++.+ .|-|.+..+|+.+ -+..++|++.+|.. |+++-.|+.
T Consensus       140 LDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~-G~iVE~g~~  194 (268)
T COG4608         140 LDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYL-GKIVEIGPT  194 (268)
T ss_pred             cchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEec-CceeEecCH
Confidence            789999999999999998 5999999999987 56788999999998 999999998

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=96.20  E-value=0.006  Score=54.60  Aligned_cols=54  Identities=13%  Similarity=0.270  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||-.-+.+|+++||+|-+ .|..++..+|+.+ -+-++.|+|.+|.+ |+++..|.+
T Consensus       188 LDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~-G~ivE~~~t  242 (534)
T COG4172         188 LDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQH-GEIVETGTT  242 (534)
T ss_pred             hhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEec-cEEeecCcH
Confidence            688889999999999977 6999999999997 46788999999999 999999988

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0058  Score=57.61  Aligned_cols=51  Identities=12%  Similarity=0.144  Sum_probs=44.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeE-EEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQE-IYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~-~y~G~~   56 (265)
                      ||+.+...+.+.|++   .|.|||+++|++. .+.+.+|++++|.+ |++ ++.|+.
T Consensus       186 LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~  237 (530)
T PRK15064        186 LDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDY-GELRVYPGNY  237 (530)
T ss_pred             cCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeC-CEEEEecCCH
Confidence            799999999999874   5899999999986 57788999999998 888 588887

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=96.15  E-value=0.0071  Score=58.43  Aligned_cols=59  Identities=24%  Similarity=0.313  Sum_probs=51.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC-----CCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ-----GRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~-----gg~~~y~G~~~~~~~~~~~   65 (265)
                      |......++++.|++|.+.|.|+|++-|++  ++...+|+|+=+.+     ||++++.|++    +++.+
T Consensus       514 LHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp----~~i~~  577 (935)
T COG0178         514 LHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTP----EELLA  577 (935)
T ss_pred             CChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCH----HHHHh
Confidence            456677899999999999999999999997  78899999999976     4899999999    66665

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.14  E-value=0.012  Score=46.32  Aligned_cols=54  Identities=17%  Similarity=0.266  Sum_probs=47.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.-+.++++.+|+|+..|.|-++++|.-.. .-....+++.|.+ |+++..|..
T Consensus       172 ldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g~ive~g~a  225 (242)
T COG4161         172 LDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-GHIVEQGDA  225 (242)
T ss_pred             cCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-CeeEeecch
Confidence            79999999999999999999999999997653 2355899999998 999999986

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.14  E-value=0.012  Score=48.32  Aligned_cols=53  Identities=13%  Similarity=0.061  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+-++.+|=+++.+|. ..-|||+++|.+. ...+.-|+..++.. |+++.+|++
T Consensus       180 LDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T  232 (253)
T COG1117         180 LDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPT  232 (253)
T ss_pred             cCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCH
Confidence            79999999999999997 5889999999986 45688999999998 999999999

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=96.12  E-value=0.0071  Score=55.23  Aligned_cols=53  Identities=15%  Similarity=0.280  Sum_probs=47.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL   55 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~   55 (265)
                      |-+..+.++++.|+++++.|+|||..+|... |+.+.+|++-+|.+ |+++-.-+
T Consensus       171 LTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~~  223 (501)
T COG3845         171 LTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGTVD  223 (501)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEeeec
Confidence            3466789999999999999999999999986 89999999999998 88876655

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=96.12  E-value=0.01  Score=59.43  Aligned_cols=63  Identities=17%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHHhh
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYFKL   69 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF~~   69 (265)
                      +|+.++.++.+.++++.++|+.||.|+|... |.-.+|||+.+|.+ |+....|++    ++++..|..
T Consensus       729 mDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~----q~LKsrfG~  791 (885)
T KOG0059|consen  729 LDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP----QELKSRYGS  791 (885)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh----HHHHhhcCC
Confidence            6999999999999999998889999999864 77788999999998 999999999    999988843

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.06  E-value=0.0076  Score=53.45  Aligned_cols=54  Identities=22%  Similarity=0.271  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..-..++..-||++.+ .|.|.|.++|+.. |.+.+.|+|.+|++ |++.-.|+|
T Consensus       167 LD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP  221 (352)
T COG3842         167 LDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTP  221 (352)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCH
Confidence            688888899999999987 6999999999975 78899999999998 999999999

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=96.01  E-value=0.0083  Score=56.81  Aligned_cols=50  Identities=18%  Similarity=0.208  Sum_probs=43.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEe
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYV   53 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~   53 (265)
                      ||+.+..++.+.|.+..+ .|+|+|+++|++  +..+.+|++++|.+ |+++..
T Consensus       480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~-G~i~e~  530 (547)
T PRK10522        480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRN-GQLSEL  530 (547)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEEC-CEEEEe
Confidence            799999999999987754 589999999998  45788999999998 787754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.01  E-value=0.0072  Score=60.95  Aligned_cols=57  Identities=25%  Similarity=0.356  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+.+.|.+.+ .|||.|++.|+.+ .| +-.|+|+++.+ |+++..|.+    +++++
T Consensus       520 LD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tI-rnaD~I~v~~~-G~IvE~G~h----~ELi~  576 (1228)
T KOG0055|consen  520 LDAESERVVQEALDKAS-KGRTTIVVAHRLS-TI-RNADKIAVMEE-GKIVEQGTH----DELIA  576 (1228)
T ss_pred             cCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hh-hccCEEEEEEC-CEEEEecCH----HHHHh
Confidence            79999999999998765 4999999999986 34 44999999998 999999999    77765

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=96.00  E-value=0.0077  Score=63.46  Aligned_cols=56  Identities=14%  Similarity=0.233  Sum_probs=48.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||..+...+.+.|++.. .++|||++.|.++  ....+|+|++|.+ |+++-.|++    +++.
T Consensus      1384 lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p----~~Ll 1439 (1490)
T TIGR01271      1384 LDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSI----QKLL 1439 (1490)
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCH----HHHH
Confidence            79999999999999864 4899999999985  4556999999998 999999998    6665

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03232 ABC transporter C family member; Provisional

Probab=95.92  E-value=0.0097  Score=62.78  Aligned_cols=56  Identities=23%  Similarity=0.324  Sum_probs=46.4

Q ss_pred             CchHHHHHHHHH-HHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRT-VRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~-l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++.++++. ++.+ .+|+|+|+++|+++  ..+.+|+|++|.+ |+++..|+.    +++.
T Consensus       771 LD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~----~eL~  827 (1495)
T PLN03232        771 LDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTF----AELS  827 (1495)
T ss_pred             cCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCH----HHHH
Confidence            799999988765 4443 36899999999985  4688999999997 999999987    5654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.91  E-value=0.0076  Score=50.50  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=41.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||+.|..++-+.|.++.+ .++||+.++|+.. |...+.|+|++|++
T Consensus       161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~  206 (248)
T COG1116         161 LDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN  206 (248)
T ss_pred             hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence            799999999999999988 6899999999996 66678999999998

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0076  Score=54.12  Aligned_cols=57  Identities=23%  Similarity=0.361  Sum_probs=49.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.|..++-..|++.+ .|+|.++..|..|. +.+ .|+|++|++ |+++..|..    ++++.
T Consensus       430 ldt~te~~iq~~l~~~~-~~rttlviahrlst-i~~-adeiivl~~-g~i~erg~h----~~ll~  486 (497)
T COG5265         430 LDTHTEQAIQAALREVS-AGRTTLVIAHRLST-IID-ADEIIVLDN-GRIVERGTH----EELLA  486 (497)
T ss_pred             hhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-ccC-CceEEEeeC-CEEEecCcH----HHHHH
Confidence            79999999999999998 69999999999874 434 999999998 999999987    55554

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=95.84  E-value=0.01  Score=62.35  Aligned_cols=58  Identities=16%  Similarity=0.263  Sum_probs=48.8

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC---Ce-EEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG---RQ-EIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g---g~-~~y~G~~~~~~~~~~   64 (265)
                      ||+.+...|.+.|+++.+ +++|+|+++|+++  ..+.+|+|++|.+|   |+ ++..|+.    +++.
T Consensus      1389 LD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth----~eLl 1451 (1466)
T PTZ00265       1389 LDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH----EELL 1451 (1466)
T ss_pred             cCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH----HHHH
Confidence            799999999999999974 6999999999984  46789999999973   67 4478987    5554

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=95.79  E-value=0.011  Score=62.42  Aligned_cols=54  Identities=17%  Similarity=0.156  Sum_probs=48.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||..+..++++.|+++++.|.|||+++|++. .+ +.+|++++|.     .||+++..|++
T Consensus       843 LD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp  901 (1809)
T PRK00635        843 LHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP  901 (1809)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence            7999999999999999988999999999986 34 8999999996     24899999988

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=95.72  E-value=0.023  Score=46.46  Aligned_cols=51  Identities=12%  Similarity=0.050  Sum_probs=43.5

Q ss_pred             CchHHHHHHH-HHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEec
Q 039187            1 LDARAASIVI-RTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVG   54 (265)
Q Consensus         1 LD~~~~~~~~-~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G   54 (265)
                      ||+.+...++ ..++++.+.|.++|+++|.  .++.+.+|++..+.+ |++.+.+
T Consensus       121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~-g~l~~~~  172 (200)
T cd03280         121 TDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVEN-ASMEFDP  172 (200)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEE-EEEEEec
Confidence            6888888886 4788887789999999997  478899999999998 9998874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PLN03130 ABC transporter C family member; Provisional

Probab=95.69  E-value=0.014  Score=61.94  Aligned_cols=56  Identities=21%  Similarity=0.314  Sum_probs=46.3

Q ss_pred             CchHHHHHHHH-HHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIR-TVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~-~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++.++++ .++.+. +|+|+|+++|+++  ..+.+|+|++|.+ |+++..|+.    +++.
T Consensus       771 LD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~----~eL~  827 (1622)
T PLN03130        771 LDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTY----EELS  827 (1622)
T ss_pred             cCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCH----HHHH
Confidence            79999988875 455543 6899999999984  5788999999998 999999997    6654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=95.67  E-value=0.014  Score=52.36  Aligned_cols=54  Identities=15%  Similarity=0.225  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||-+-+.+++++||+|-+ .|-+=+...|+.. -+-.++|+|++|.+ |+++..||+
T Consensus       457 LD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~  511 (534)
T COG4172         457 LDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT  511 (534)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence            677788999999999987 6999999999986 46678999999998 999999998

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.011  Score=52.13  Aligned_cols=54  Identities=20%  Similarity=0.318  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||.....++..-++++.+ .|.|+|-++|+.. |.+.+.|++.+|.+ |++.-.|.|
T Consensus       164 LDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~-G~i~Q~g~p  218 (338)
T COG3839         164 LDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMND-GRIQQVGTP  218 (338)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeC-CeeeecCCh
Confidence            788889999999999987 5999999999974 88999999999997 999999999

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.012  Score=54.36  Aligned_cols=54  Identities=15%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      .|-.+..++.++++++|++|++||+..-..+ |+..++|||++|.+ |+++-.=+.
T Consensus       432 IDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~  485 (500)
T COG1129         432 IDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDR  485 (500)
T ss_pred             cccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEecc
Confidence            3667789999999999999999888888764 89999999999998 999874444

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=95.62  E-value=0.014  Score=61.79  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             CchHHHHHHHHHHHHHh--hCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTV--DTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~--~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++.++.+.+.+..  .+|+|+|+++|+++  ..+.+|+|++|.+ |+++..|+.    +++.
T Consensus       791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~-G~i~~~g~~----~~l~  849 (1522)
T TIGR00957       791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSG-GKISEMGSY----QELL  849 (1522)
T ss_pred             cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecC-CeEEeeCCH----HHHH
Confidence            79999999999997642  35899999999985  3466999999997 999999997    5554

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13409 putative ATPase RIL; Provisional

Probab=95.60  E-value=0.012  Score=56.22  Aligned_cols=68  Identities=19%  Similarity=0.166  Sum_probs=52.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCC---cchHHHHHhhCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRH---SCHLTRYFKLLL   71 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~---~~~~~~yF~~~g   71 (265)
                      ||..+...+.+.|+++++ .|.|||+++|++. .+...+|++++|.  |++...|.....   .+.+..|++.+|
T Consensus       484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~~~~  555 (590)
T PRK13409        484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLKELG  555 (590)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHHHcC
Confidence            799999999999999988 5899999999975 6778899999996  477766664211   023345676665

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=95.56  E-value=0.012  Score=56.88  Aligned_cols=51  Identities=20%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||..+...+.+.|+++  .| |||+++|++. .+.+.+|++++|.+ |+++ |.|+.
T Consensus       461 LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~  512 (638)
T PRK10636        461 LDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL  512 (638)
T ss_pred             CCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence            7999999999999997  34 9999999974 67788999999998 8887 88876

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=95.53  E-value=0.016  Score=61.01  Aligned_cols=44  Identities=20%  Similarity=0.381  Sum_probs=40.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||+.+...+.+.|+++++ .|+|+|+++|+++.  .+.+|+|++|.+
T Consensus       610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~  654 (1466)
T PTZ00265        610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSN  654 (1466)
T ss_pred             cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeC
Confidence            799999999999999986 69999999999963  478999999997

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.42  E-value=0.015  Score=49.76  Aligned_cols=54  Identities=15%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||-....+++-.|.+|++. +..|+-++|.+ .|+.++.|+|++|.+ |++...||.
T Consensus       159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~-GkV~A~g~~  213 (352)
T COG4148         159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLEN-GKVKASGPL  213 (352)
T ss_pred             cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecC-CeEEecCcH
Confidence            6778889999999999984 77899999997 489999999999999 999999998

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=95.40  E-value=0.02  Score=60.41  Aligned_cols=52  Identities=12%  Similarity=0.258  Sum_probs=44.7

Q ss_pred             CchHHHHHHHHH-HHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRT-VRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~-l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+. ++++. +|+|+|+++|++..  .+.+|++++|.+ |+++..|+.
T Consensus       579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~-g~i~~~g~~  631 (1490)
T TIGR01271       579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHE-GVCYFYGTF  631 (1490)
T ss_pred             CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999974 66664 49999999999964  466999999997 999999997

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=95.35  E-value=0.02  Score=54.36  Aligned_cols=52  Identities=13%  Similarity=0.120  Sum_probs=42.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||..+...+.+.|+++.  | |||+++|++. .+.+.+|+++++.+||++. +.|+.
T Consensus       476 LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~  528 (556)
T PRK11819        476 LDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF  528 (556)
T ss_pred             CCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence            79999999999999973  4 8999999985 6778899999998656766 55554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=95.33  E-value=0.018  Score=54.57  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=43.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||+.+...+.+.|+++   +.|||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus       192 LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~  243 (552)
T TIGR03719       192 LDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY  243 (552)
T ss_pred             CChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCH
Confidence            7999999999999886   359999999985 67788999999998 8865 77876

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PTZ00243 ABC transporter; Provisional

Probab=95.28  E-value=0.024  Score=60.10  Aligned_cols=53  Identities=21%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.+......|+|+|+++|++.  ..+.+|++++|++ |++++.|+.
T Consensus       813 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~-G~i~~~G~~  865 (1560)
T PTZ00243        813 LDAHVGERVVEECFLGALAGKTRVLATHQVH--VVPRADYVVALGD-GRVEFSGSS  865 (1560)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEecCH
Confidence            7999988888754322336899999999985  3478999999998 999999997

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=95.21  E-value=0.022  Score=54.06  Aligned_cols=51  Identities=18%  Similarity=0.190  Sum_probs=44.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||+.+...+.+.|+++.   .|||+++|++. .+-+.+|++++|.+ |+++ |.|+.
T Consensus       194 LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~  245 (556)
T PRK11819        194 LDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY  245 (556)
T ss_pred             CChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCH
Confidence            79999999999999873   59999999985 67788999999998 8876 88876

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=95.15  E-value=0.025  Score=53.71  Aligned_cols=52  Identities=12%  Similarity=0.110  Sum_probs=42.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||..+...+.+.|+++.  | |||+++|++. .+.+.+|++++|.+||++. +.|+.
T Consensus       474 LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~  526 (552)
T TIGR03719       474 LDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY  526 (552)
T ss_pred             CCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence            79999999999999983  3 8999999985 6778899999998656766 44543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03073 ABC transporter F family; Provisional

Probab=95.10  E-value=0.024  Score=55.44  Aligned_cols=51  Identities=24%  Similarity=0.344  Sum_probs=43.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||..+...+++.|++.  .| |||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus       658 LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~~  709 (718)
T PLN03073        658 LDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGTF  709 (718)
T ss_pred             CCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence            7999999988888765  34 9999999985 57788999999998 8887 77876

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=95.06  E-value=0.031  Score=51.13  Aligned_cols=54  Identities=19%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||..++..+-+.|.++++.|+.|++.....- |+++++|+|.++.+ |+++...++
T Consensus       434 LDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~  487 (501)
T COG3845         434 LDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPP  487 (501)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccc
Confidence            7999999999999999999999999988874 89999999999998 999998888

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.87  E-value=0.027  Score=53.83  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=46.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+-+.|.++.+ |+|||+..|..+  ..+..|+|+++++ |+++..|..
T Consensus       635 LDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V~E~G~h  686 (716)
T KOG0058|consen  635 LDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRVVEMGTH  686 (716)
T ss_pred             cchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeEEecccH
Confidence            799999999999999886 599999999886  5688999999998 999999976

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=94.83  E-value=0.051  Score=45.09  Aligned_cols=53  Identities=9%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            2 DARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         2 D~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      -|.-..+|.+.++++.++ |.||+.+-+.-. ...+..|+.++|.+ |++++.||.
T Consensus       168 aP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~  221 (237)
T COG0410         168 APKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTA  221 (237)
T ss_pred             CHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCH
Confidence            355568999999999975 778888877654 67899999999998 999999998

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=94.71  E-value=0.021  Score=52.46  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||..+..++-..|.+++. |||.|++.|..|. +.+ .|.|+++++ |+++..|..    ++++.
T Consensus       705 LDT~tER~IQaaL~rlca-~RTtIVvAHRLST-ivn-AD~ILvi~~-G~IvErG~H----eeLl~  761 (790)
T KOG0056|consen  705 LDTNTERAIQAALARLCA-NRTTIVVAHRLST-IVN-ADLILVISN-GRIVERGRH----EELLK  761 (790)
T ss_pred             cCCccHHHHHHHHHHHhc-CCceEEEeeeehh-eec-ccEEEEEeC-CeEeecCcH----HHHHh
Confidence            688888999999999986 8999999999874 434 999999998 999999987    55554

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.70  E-value=0.03  Score=56.72  Aligned_cols=57  Identities=21%  Similarity=0.323  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+=+.|.+.. .|||.|++.|+++  ..+-+|.|.++++ |+++..|.-    +++..
T Consensus      1157 LDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~VvE~GtH----~~L~~ 1213 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKN-GKVVEQGTH----DELLA 1213 (1228)
T ss_pred             hhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEEC-CEEEecccH----HHHHh
Confidence            78988888888888876 4899999999997  4677999999998 999999998    66664

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.66  E-value=0.045  Score=45.15  Aligned_cols=51  Identities=16%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEe
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYV   53 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~   53 (265)
                      |||.++..+|+.-.+..+ .+-|.++++|... +..++=+|.++|++ |+++..
T Consensus       179 LDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~-G~IvlD  230 (263)
T COG1101         179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHS-GKIVLD  230 (263)
T ss_pred             CCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeC-CeEEEE
Confidence            799999999999999987 5779999999986 56788999999998 999973

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.61  E-value=0.052  Score=43.34  Aligned_cols=54  Identities=30%  Similarity=0.361  Sum_probs=47.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||-+-+.++.++|+.|.. -|-.+++++|+.... --+.|+.++|++ |+++..|-+
T Consensus       182 LDVSVQARLLDllrgLv~~l~la~viVTHDl~Va-rLla~rlmvmk~-g~vve~GLT  236 (258)
T COG4107         182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA-RLLADRLMVMKQ-GQVVESGLT  236 (258)
T ss_pred             cchhhHHHHHHHHHHHHHhcCceEEEEechhHHH-HHhhhcceeecC-CCEeccccc
Confidence            678888999999999987 599999999998643 344899999998 999999988

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.61  E-value=0.052  Score=47.28  Aligned_cols=54  Identities=20%  Similarity=0.218  Sum_probs=47.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      |||--..++=+-|.+|-+ -++||+.++|+.. |.++.=|+|.+|.. |+++-.|.|
T Consensus       195 LDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkd-G~ivQ~Gtp  249 (386)
T COG4175         195 LDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKD-GEIVQVGTP  249 (386)
T ss_pred             cChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecC-CeEEEeCCH
Confidence            677777777777778766 5999999999986 78899999999996 999999999

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=94.53  E-value=0.57  Score=39.49  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhhcChhHHHHHHHHHHHHHHHH
Q 039187          121 MACLWKQWWSYWQNPAYTAVKFFFTTFTAVLL  152 (265)
Q Consensus       121 ~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~  152 (265)
                      +.+.+|+++...|.|..+..-.+..++.|+..
T Consensus         2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~   33 (240)
T TIGR03518         2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL   33 (240)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999988877777777543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.52  E-value=0.035  Score=57.30  Aligned_cols=57  Identities=19%  Similarity=0.306  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      +|++++.++.+..-+..-+++|+|.++||-  +.++.+|.|++|++ |++...|+-    +++.
T Consensus       674 VDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~-G~I~~~Gty----~el~  730 (1381)
T KOG0054|consen  674 VDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKD-GKIVESGTY----EELL  730 (1381)
T ss_pred             hhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecC-CeEecccCH----HHHH
Confidence            588888888876665555799999999975  67899999999998 999999998    7777

>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional

Probab=94.43  E-value=1.4  Score=37.64  Aligned_cols=40  Identities=13%  Similarity=0.047  Sum_probs=34.3

Q ss_pred             eccccccCCCCCCcchhhhhhhcHHHHHHHHHhhhhcCCC
Q 039187          223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLYGLIAPRLGMR  262 (265)
Q Consensus       223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~al~~~ef~~~  262 (265)
                      ..||.+-+.+.+|++++++.++||+.+.+|+.=..-+++.
T Consensus       192 ~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~  231 (264)
T PRK15176        192 LISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGY  231 (264)
T ss_pred             HHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCc
Confidence            7788888999999999999999999999998776666553

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=94.30  E-value=0.057  Score=52.17  Aligned_cols=51  Identities=14%  Similarity=0.167  Sum_probs=43.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||..+...+.+.|+++   +.|||+++|++. .+.+.+|+++.|.+ |+++ |.|+.
T Consensus       187 LD~~~~~~L~~~L~~~---~~tvlivsHd~~-~l~~~~d~i~~L~~-G~i~~~~g~~  238 (635)
T PRK11147        187 LDIETIEWLEGFLKTF---QGSIIFISHDRS-FIRNMATRIVDLDR-GKLVSYPGNY  238 (635)
T ss_pred             cCHHHHHHHHHHHHhC---CCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEecCCH
Confidence            7999999999999987   359999999975 67788999999998 8886 55665

>PRK13409 putative ATPase RIL; Provisional

Probab=94.11  E-value=0.047  Score=52.22  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=40.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||..+..++.+.|+++++ |+|||+++|++. .+...+|++++|..
T Consensus       243 LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~  286 (590)
T PRK13409        243 LDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYG  286 (590)
T ss_pred             CCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence            799999999999999998 999999999986 67788999999974

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.05  E-value=0.057  Score=44.36  Aligned_cols=54  Identities=11%  Similarity=0.124  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      +|+.|+.++..+|.++-+ +|.||+.+.|+.. .+-+-+|++-+|.- |+.+..+|.
T Consensus       189 ~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYC-GQ~~ESa~~  243 (330)
T COG4170         189 MEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYC-GQTVESAPS  243 (330)
T ss_pred             cCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEe-cccccccch
Confidence            578999999999999987 6889999999985 57788999999997 999999998

>PLN03073 ABC transporter F family; Provisional

Probab=94.03  E-value=0.065  Score=52.44  Aligned_cols=51  Identities=14%  Similarity=0.176  Sum_probs=43.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||+.+...+.+.|+++   +.|||+++|+.. .+.+.+|++++|.+ |++. |.|+.
T Consensus       375 LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l~~-g~i~~~~g~~  426 (718)
T PLN03073        375 LDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHLHG-QKLVTYKGDY  426 (718)
T ss_pred             CCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence            7999999999999986   789999999964 57778999999998 8886 66665

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=93.69  E-value=0.053  Score=46.70  Aligned_cols=46  Identities=20%  Similarity=0.400  Sum_probs=39.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ   49 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~   49 (265)
                      ||+.+...+++.|+++.+ +.|+|+++|+|.  +.+.+|+++.+.++++
T Consensus       205 Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~~~~~  250 (276)
T cd03241         205 ISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVEKEVE  250 (276)
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEEEecC
Confidence            689999999999999865 789999999985  5689999999998533

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.59  E-value=0.094  Score=54.26  Aligned_cols=57  Identities=14%  Similarity=0.281  Sum_probs=45.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      .|+.|-..|=+++|+- -.++||++..|..+. +.+ +|+|++|++ |+++.+|.|    +++.+
T Consensus      1306 VD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~T-Vmd-~DrVlVld~-G~v~EfdsP----~~Ll~ 1362 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREE-FKDCTVLTIAHRLNT-VMD-SDRVLVLDA-GRVVEFDSP----AELLS 1362 (1381)
T ss_pred             CChHHHHHHHHHHHHH-hcCCeEEEEeeccch-hhh-cCeEEEeeC-CeEeecCCh----HHHHh
Confidence            3666666676777662 269999999999984 555 999999998 999999999    66664

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=93.37  E-value=0.091  Score=50.81  Aligned_cols=51  Identities=18%  Similarity=0.228  Sum_probs=42.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||..+...+.+.|++.   +.|||+++|++. .+.+.+|++++|.+ |++. |.|..
T Consensus       180 LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~-G~i~~~~g~~  231 (638)
T PRK10636        180 LDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQ-QSLFEYTGNY  231 (638)
T ss_pred             CCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeC-CEEEEecCCH
Confidence            7999999999998875   569999999975 67788999999998 7875 66654

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=93.18  E-value=1.2  Score=36.84  Aligned_cols=92  Identities=11%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhHHHhhhHHHHHHHH----------------
Q 039187          120 FMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLGGRHDQKSQDLFNATGSMFTAIIS----------------  183 (265)
Q Consensus       120 ~~~L~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~~g~l~~~~~~----------------  183 (265)
                      ++.+.+|+++..+|++......+...+....++...+..-++      ..-....|.++.+..+                
T Consensus         1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al~~~~~------~l~~~~~gllWi~~lfa~~l~~~r~f~~E~e~   74 (215)
T PF03379_consen    1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFALGPDPD------LLARVAPGLLWIALLFASLLGLNRSFAREYED   74 (215)
T ss_pred             CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhcCCchh------HHHHHhHHHHHHHHHHHHHHHhhHhHHHHHhC
Confidence            467899999999999998877777777776666666532211      1112233444444443                


Q ss_pred             ---------------HHHHHHHHHhhHHHHHHHHHHHHHhhccCccccc
Q 039187          184 ---------------SAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTA  217 (265)
Q Consensus       184 ---------------y~la~~~~~lp~~~~~~~i~~~i~y~~~g~~~~~  217 (265)
                                     ++++|.+.......+..++...+...+.|.+...
T Consensus        75 G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~~~  123 (215)
T PF03379_consen   75 GTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPISS  123 (215)
T ss_pred             CcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH
Confidence                           7899999987777776666666666666766543

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>TIGR00634 recN DNA repair protein RecN

Probab=93.16  E-value=0.082  Score=50.34  Aligned_cols=43  Identities=16%  Similarity=0.393  Sum_probs=38.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||..++..+.+.|+++++ +++||+++|+|.  +...+|+++++.+
T Consensus       475 ld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l~k  517 (563)
T TIGR00634       475 VSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKVEK  517 (563)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEEEE
Confidence            689999999999999985 899999999985  4468999999997

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=92.26  E-value=0.28  Score=44.17  Aligned_cols=51  Identities=18%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187            2 DARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL   55 (265)
Q Consensus         2 D~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~   55 (265)
                      ||+-...+.+.+-.+-+ .|+||++++|+-++  |.+.||++.+.+ |+++.--+
T Consensus       480 DPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~Y--F~~ADrll~~~~-G~~~e~tg  531 (546)
T COG4615         480 DPAFRREFYQVLLPLLKEQGKTIFAISHDDHY--FIHADRLLEMRN-GQLSELTG  531 (546)
T ss_pred             ChHHHHHHHHHHhHHHHHhCCeEEEEecCchh--hhhHHHHHHHhc-Cceeeccc
Confidence            66667777766665555 79999999999865  789999999999 89887543

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=92.05  E-value=0.37  Score=39.38  Aligned_cols=55  Identities=20%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC-CeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG-RQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g-g~~~y~G~~   56 (265)
                      ||..+..++-++|-++++ +|+.++.++|... |..-+.+++++|+.| |+++..=|+
T Consensus       163 lDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~  219 (259)
T COG4525         163 LDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL  219 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence            688999999999999998 7999999999986 455568999999864 577766555

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=91.68  E-value=0.18  Score=48.73  Aligned_cols=47  Identities=13%  Similarity=0.135  Sum_probs=39.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-CCCeEEE
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-QGRQEIY   52 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-~gg~~~y   52 (265)
                      ||..+...+.+.|++.   +.|||+++|+.. .+.+.+|+++++. + |++..
T Consensus       471 LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~-g~i~~  518 (635)
T PRK11147        471 LDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGN-GKIGR  518 (635)
T ss_pred             CCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCC-CeEEE
Confidence            7999999999999886   459999999974 6778899999997 6 56544

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=91.54  E-value=0.18  Score=49.09  Aligned_cols=59  Identities=17%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC-----CCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ-----GRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~-----gg~~~y~G~~~~~~~~~~~   65 (265)
                      |....-.++++.|.+|.+.|.|||+.-|..  ++...+|.|+=|.+     ||+++..|.|    +++.+
T Consensus       856 LH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTP----eeva~  919 (935)
T COG0178         856 LHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTP----EEVAK  919 (935)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCH----HHHHh
Confidence            455677899999999999999999999976  78899999999964     6899999999    66654

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=91.35  E-value=0.4  Score=38.71  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||.+...+++++.-+|-+ .|.+-|-+.++.. -+-+..|+|++|.+ |+++..|.+
T Consensus       180 LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~E-G~vvE~G~t  234 (267)
T COG4167         180 LDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHE-GEVVERGST  234 (267)
T ss_pred             ccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEec-CceeecCCh
Confidence            788999999999999987 6999887777766 46677999999999 999999998

>PRK10869 recombination and repair protein; Provisional

Probab=91.33  E-value=0.22  Score=47.31  Aligned_cols=43  Identities=19%  Similarity=0.402  Sum_probs=38.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||..++..+.+.|+++++ +.+|||++|+|.  +...+|+.+.+.+
T Consensus       465 ld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k  507 (553)
T PRK10869        465 ISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSK  507 (553)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence            688999999999999975 689999999995  4588999999997

>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.32  E-value=3.2  Score=34.93  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=26.4

Q ss_pred             eccccccCCCCCCcchhhhhhhcHHHHHHH
Q 039187          223 LIPGFMIPGPRIPIRWRWYYWANPIAWTLY  252 (265)
Q Consensus       223 l~sG~~~~~~~ip~~~~w~~~lsp~~y~~~  252 (265)
                      ++||.+.|.+..|+|.+-+--..|+-|...
T Consensus       190 f~sG~l~PL~~fP~~v~~il~ftPFpy~~y  219 (268)
T COG4587         190 FLSGSLAPLAFFPDWVRAILAFTPFPYLLY  219 (268)
T ss_pred             HhccccchHHhChHHHHHHHHhCCchhhhc
Confidence            899999999999999998877788877764

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=89.15  E-value=0.65  Score=38.65  Aligned_cols=41  Identities=12%  Similarity=-0.041  Sum_probs=33.3

Q ss_pred             HHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecC
Q 039187           12 TVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGL   55 (265)
Q Consensus        12 ~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~   55 (265)
                      .++.+.+ .|.++++++|.  .++.+++|++..+.+ |++...+.
T Consensus       134 il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~  175 (222)
T cd03285         134 IAEYIATQIKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD  175 (222)
T ss_pred             HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence            3455554 58999999996  688999999999998 89988764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=89.04  E-value=0.81  Score=37.29  Aligned_cols=53  Identities=8%  Similarity=0.022  Sum_probs=42.3

Q ss_pred             CchHHHHHHHH-HHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIR-TVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~-~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.....+.+ .++.+.+.+.++|+++|.+  ++.+.+|++..+.. |++...+..
T Consensus       121 ld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~-~~~~~~~~~  174 (202)
T cd03243         121 TSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKN-LHMEELITT  174 (202)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEE-EEEEEEecC
Confidence            57777776654 4666666799999999975  77888999999998 899988865

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=86.40  E-value=1  Score=36.82  Aligned_cols=49  Identities=10%  Similarity=0.157  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            5 AASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      .+.+..++|+.+|. .++|+++-|+.. .+-++.|+|.+|.+ |+++..|..
T Consensus       182 Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~-G~VL~EGsl  230 (249)
T COG4674         182 ETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE-GSVLAEGSL  230 (249)
T ss_pred             HHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec-cceeecccH
Confidence            34677888888875 789999999986 67888999999999 999999987

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=86.28  E-value=1.1  Score=37.07  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHhhCCCeEEEEecCC
Q 039187            4 RAASIVIRTVRNTVDTGRTVVCTIHQP   30 (265)
Q Consensus         4 ~~~~~~~~~l~~l~~~~~tvi~~ihqp   30 (265)
                      ....+++..+|++++.|++|++|.|+-
T Consensus       142 ~~vl~fm~~~r~l~d~gKvIilTvhp~  168 (235)
T COG2874         142 DAVLNFMTFLRKLSDLGKVIILTVHPS  168 (235)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeChh
Confidence            366889999999999999999999974

>COG3910 Predicted ATPase [General function prediction only]

Probab=83.37  E-value=1.9  Score=35.03  Aligned_cols=30  Identities=20%  Similarity=0.457  Sum_probs=27.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQP   30 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp   30 (265)
                      |.+..+..+...|++++++|--+|+.+|.|
T Consensus       159 LSp~RQlella~l~~la~sGaQ~IiATHSP  188 (233)
T COG3910         159 LSPSRQLELLAILRDLADSGAQIIIATHSP  188 (233)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence            567788999999999999998899999988

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=81.53  E-value=1.9  Score=43.00  Aligned_cols=53  Identities=9%  Similarity=-0.039  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHHHHhhCCCeEEEEecCCCHH--------HHHhhhhhhhccCCCeEEEecC
Q 039187            2 DARAASIVIRTVRNTVDTGRTVVCTIHQPSIE--------IFEAFDELFLMKQGRQEIYVGL   55 (265)
Q Consensus         2 D~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~--------~~~~fd~~~~l~~gg~~~y~G~   55 (265)
                      |+..+..+.+.++++++.|.++++++|+|..-        +.+.+|.+++|.+ |+....|+
T Consensus       667 d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n-~~a~~~~~  727 (818)
T PRK13830        667 HPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPN-GAAREPGT  727 (818)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCC-ccccccch
Confidence            67889999999999998899999999998632        3467898888887 77655443

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=81.04  E-value=2.6  Score=38.83  Aligned_cols=52  Identities=13%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             CchHHHHHHHHHHHHHhh--CCC-----eEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD--TGR-----TVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~--~~~-----tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      +|+.....+.++++++..  .|.     ||++..|+.+.   ..+|++..+.+ |+++..+..
T Consensus       280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~d-G~Ivls~~l  338 (438)
T PRK07721        280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILD-GHFVLDRQL  338 (438)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecC-EEEEEeccH
Confidence            578888899999999984  575     99999999873   67999999998 999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 37/203 (18%), Positives = 63/203 (31%), Gaps = 60/203 (29%)

Query: 54  GLLGRHSCHLTRYFKLLLHPSGADFSDIY-----KRSDLYRRNKMLIEHLSKQ------- 101
            L+ +     T      +         IY     K  + Y  ++ +++H +         
Sbjct: 415 SLVEKQPKESTIS----IP-------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

Query: 102 -APGSKDLYFLTQYSYFTQFMACLWKQWWSYWQNPAYTAVKFFFTTFTAVLLGSLSWDLG 160
             P   D YF   YS+              +         +   T F  V L    + L 
Sbjct: 464 LIPPYLDQYF---YSHI------------GHHLKNIEHPERM--TLFRMVFL-DFRF-LE 504

Query: 161 G--RHDQKSQDLFNATGSMFTAIISSAFNTIMVEVPHIFVQSLVYSVIVDAMMGFDRTA- 217
              RHD  +   +NA+GS     I +    +    P+I      Y  +V+A++ F     
Sbjct: 505 QKIRHDSTA---WNASGS-----ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 218 -----SKFFRLIP-GFMIPGPRI 234
                SK+  L+    M     I
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAI 579

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.11
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.07
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.06
1g6h_A	257	High-affinity branched-chain amino acid transport	98.05
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.05
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.02
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.02
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.98
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.95
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.93
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.82
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.82
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.8
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.79
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.78
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.78
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.77
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.76
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.75
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.74
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.74
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.72
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.69
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.68
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.65
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.65
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.59
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.49
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.49
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.48
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.46
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.45
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.41
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.39
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.31
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.29
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.28
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.24
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.21
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.17
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.16
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.13
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.05
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.96
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	96.91
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.9
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.83
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.81
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.8
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.77
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.75
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.74
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.66
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.56
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.46
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.2
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.1
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.64
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.45
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	95.38
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.3
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.2
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.15
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.83
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.37
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.07
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.52
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.19
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	92.98
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	92.63
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	91.83
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	90.44
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	90.19
3kta_B	173	Chromosome segregation protein SMC; structural mai	90.15
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.0
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	89.63
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	89.48
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	83.67
4a74_A	231	DNA repair and recombination protein RADA; hydrola	81.97
2cvh_A	220	DNA repair and recombination protein RADB; filamen	81.07

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.11  E-value=1.3e-06  Score=74.09  Aligned_cols=54  Identities=22%  Similarity=0.308  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHh-hCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTV-DTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~-~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++ +.|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       174 LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~  228 (275)
T 3gfo_A          174 LDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNP  228 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            79999999999999998 56999999999997 56678999999998 999999998

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.07  E-value=2.2e-06  Score=72.11  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       184 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  237 (262)
T 1b0u_A          184 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP  237 (262)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999888999999999975 56788999999998 999999987

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.06  E-value=2.7e-06  Score=71.61  Aligned_cols=54  Identities=22%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       190 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  243 (263)
T 2olj_A          190 LDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKP  243 (263)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999878999999999975 56778999999998 999999987

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.05  E-value=3e-06  Score=71.08  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       184 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  237 (257)
T 1g6h_A          184 VAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRG  237 (257)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence            7999999999999999888999999999986 56678999999998 999999998

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.05  E-value=2.3e-06  Score=70.99  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       170 LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  223 (240)
T 1ji0_A          170 LAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA  223 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999878999999999974 56788999999998 999999987

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.02  E-value=2.7e-06  Score=71.75  Aligned_cols=54  Identities=20%  Similarity=0.258  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++ |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       178 LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~  232 (266)
T 4g1u_C          178 LDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTP  232 (266)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999875 679999999985 67788999999998 999999998

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.02  E-value=2.9e-06  Score=74.60  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=50.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++.+ .|.|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       194 LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~  248 (366)
T 3tui_C          194 LDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTV  248 (366)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999986 5999999999985 67788999999998 999999998

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.98  E-value=3.8e-06  Score=69.74  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++++ .|+|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus       157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~  211 (240)
T 2onk_A          157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL  211 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999986 5999999999975 56788999999998 999999987

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.95  E-value=3.5e-06  Score=70.65  Aligned_cols=59  Identities=20%  Similarity=0.251  Sum_probs=52.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.++.++++.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|++    +++.+
T Consensus       177 LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~----~~~~~  235 (256)
T 1vpl_A          177 LDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV----EELKE  235 (256)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH----HHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCH----HHHHH
Confidence            7999999999999999878999999999984 56677999999998 999999988    55543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.93  E-value=5.1e-06  Score=70.03  Aligned_cols=54  Identities=19%  Similarity=0.375  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++|+|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  222 (266)
T 2yz2_A          169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR  222 (266)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999877999999999986 45677999999998 999999987

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.92  E-value=5.8e-06  Score=69.02  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|.+ |+++..|++
T Consensus       164 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  217 (249)
T 2qi9_C          164 LDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR  217 (249)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999877999999999975 56688999999998 999999987

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.82  E-value=8.5e-06  Score=68.70  Aligned_cols=58  Identities=19%  Similarity=0.161  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++.++++.|++++++|+|||+++|++. .+... +|++++|.+ |+++..|++    +++.
T Consensus       195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~----~~~~  253 (267)
T 2zu0_C          195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-GRIVKSGDF----TLVK  253 (267)
T ss_dssp             CCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEET-TEEEEEECT----THHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEEC-CEEEEEcCH----HHHh
Confidence            7999999999999999877999999999985 34444 899999998 999999998    6554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.82  E-value=1e-05  Score=71.42  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=50.5

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+..+.++.+.|+++.+ .|.|+|+++|++. ++..++|+|++|.+ |+++..|++
T Consensus       164 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~  218 (381)
T 3rlf_A          164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP  218 (381)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence            799999999999999987 4999999999985 78899999999998 999999998

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.80  E-value=1.4e-05  Score=70.09  Aligned_cols=54  Identities=19%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+..+.++.+.|+++.+ .|.|+|+++|+.. ++..++|+|++|++ |+++..|++
T Consensus       169 LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~  223 (359)
T 3fvq_A          169 LDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASP  223 (359)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCH
Confidence            799999999998888765 7999999999985 78899999999998 999999998

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.79  E-value=1.3e-05  Score=66.83  Aligned_cols=54  Identities=19%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHh-hhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEA-FDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~-fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++++.|+|||+++|++. .+... +|++++|.+ |+++..|++
T Consensus       174 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~-G~i~~~g~~  228 (250)
T 2d2e_A          174 LDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMD-GRVVATGGP  228 (250)
T ss_dssp             TCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEET-TEEEEEESH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEEC-CEEEEEeCH
Confidence            7999999999999999778999999999986 44455 599999998 999999987

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.78  E-value=1.3e-05  Score=67.01  Aligned_cols=53  Identities=25%  Similarity=0.400  Sum_probs=48.1

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+ ++.|++
T Consensus       159 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~  212 (253)
T 2nq2_C          159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET  212 (253)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence            7999999999999999876 999999999985 56688999999998 88 888987

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.78  E-value=1.3e-05  Score=70.34  Aligned_cols=54  Identities=22%  Similarity=0.262  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~  218 (362)
T 2it1_A          164 LDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP  218 (362)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999975 77899999999998 999999998

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.77  E-value=1.4e-05  Score=70.12  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|++ |+++..|++
T Consensus       164 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~  218 (359)
T 2yyz_A          164 LDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP  218 (359)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            799999999999999987 4999999999975 67889999999998 999999998

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.76  E-value=1.5e-05  Score=69.92  Aligned_cols=54  Identities=22%  Similarity=0.290  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~  230 (355)
T 1z47_A          176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTP  230 (355)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 4999999999975 67889999999998 999999998

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.75  E-value=1.6e-05  Score=70.20  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       170 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~  224 (372)
T 1g29_1          170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP  224 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence            799999999999999987 4999999999975 78889999999998 999999998

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.74  E-value=1.3e-05  Score=70.17  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=49.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       171 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~  225 (353)
T 1oxx_K          171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKP  225 (353)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999976 5999999999975 67889999999998 999999998

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.74  E-value=1.7e-05  Score=69.90  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.++ |.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       172 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~  226 (372)
T 1v43_A          172 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP  226 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence            7999999999999999874 999999999975 67889999999998 999999998

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.72  E-value=1.9e-05  Score=69.08  Aligned_cols=54  Identities=20%  Similarity=0.151  Sum_probs=50.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ .|.|+|+++|++. ++..++|++++|.+ |+++..|++
T Consensus       158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~  212 (348)
T 3d31_A          158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP  212 (348)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999976 5999999999974 67899999999998 999999998

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.69  E-value=2.2e-05  Score=65.39  Aligned_cols=52  Identities=23%  Similarity=0.434  Sum_probs=46.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++. .|+|||+++|++.. + +.+|++++|.+ |+++..|++
T Consensus       176 LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~  227 (247)
T 2ff7_A          176 LDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH  227 (247)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence            79999999999999995 59999999999863 3 45999999998 999999987

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.68  E-value=8e-06  Score=69.33  Aligned_cols=54  Identities=26%  Similarity=0.348  Sum_probs=49.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeE--EEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTV--VCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tv--i~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++|+||  |+++|++. ++.+.+|++++|.+ |++++.|++
T Consensus       192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~  247 (279)
T 2ihy_A          192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAV  247 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEH
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            79999999999999998779999  99999986 56678999999998 999999987

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.65  E-value=2.6e-05  Score=65.87  Aligned_cols=53  Identities=25%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++++ .|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus       187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~-G~i~~~g~~  240 (271)
T 2ixe_A          187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKE-GSVCEQGTH  240 (271)
T ss_dssp             CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999976 5999999999975 33 45999999998 999999987

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.65  E-value=3.6e-05  Score=66.09  Aligned_cols=52  Identities=17%  Similarity=0.266  Sum_probs=46.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ ++|+|+++|+++. + ..+|+|++|.+ |+++..|++
T Consensus       221 LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~-G~iv~~G~~  272 (306)
T 3nh6_A          221 LDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKD-GCIVERGRH  272 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence            799999999999999865 7999999999864 3 45999999998 999999998

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.59  E-value=3.4e-05  Score=64.72  Aligned_cols=52  Identities=19%  Similarity=0.349  Sum_probs=46.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+++.|+++.+ |+|||+++|++.. + +.+|++++|.+ |+++..|++
T Consensus       186 LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~  237 (260)
T 2ghi_A          186 LDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTH  237 (260)
T ss_dssp             TCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999965 8999999999863 3 46999999998 999999987

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.49  E-value=1.8e-05  Score=65.71  Aligned_cols=52  Identities=25%  Similarity=0.396  Sum_probs=46.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++ +|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus       170 LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~  221 (243)
T 1mv5_A          170 LDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEK-GQITGSGKH  221 (243)
T ss_dssp             SCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEET-TEECCCSCH
T ss_pred             CCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEEC-CEEEEeCCH
Confidence            78999999999999997 6999999999975 33 56999999998 999998887

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.49  E-value=5.7e-05  Score=71.75  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=50.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++.++++.|+++++.|.|||+++|++.  ....+|++++|      .+ |+++..|++    +++.
T Consensus       577 LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~-G~i~~~g~~----~~~~  639 (670)
T 3ux8_A          577 LHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRG-GQIVAVGTP----EEVA  639 (670)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGC-CEEEEEECH----HHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCC-CEEEEecCH----HHHH
Confidence            7999999999999999888999999999985  34679999999      66 999999998    6653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.48  E-value=8.1e-05  Score=69.54  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=47.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++.+ |+|+|+++|+++.  .+.+|++++|++ |+++..|++
T Consensus       511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~  562 (582)
T 3b5x_A          511 LDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDE-GEIIERGRH  562 (582)
T ss_pred             CCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999975 9999999999863  457999999998 999999998

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.46  E-value=9.1e-05  Score=69.46  Aligned_cols=52  Identities=13%  Similarity=0.302  Sum_probs=47.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++. +|+|+|+++|+++. + +.+|+|++|++ |+++..|++
T Consensus       522 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~  573 (598)
T 3qf4_B          522 VDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD-GEIVEMGKH  573 (598)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS-SSEEECSCH
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence            79999999999999996 59999999999984 3 55999999998 999999998

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.41  E-value=8.3e-05  Score=69.56  Aligned_cols=56  Identities=11%  Similarity=0.129  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+..++.+.|+++. +|+|+|+++|+++.  ...+|+|++|++ |+++..|++    +++.
T Consensus       510 LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~----~el~  565 (587)
T 3qf4_A          510 VDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTH----KELL  565 (587)
T ss_dssp             SCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECH----HHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCH----HHHH
Confidence            79999999999999985 59999999999864  458999999998 999999998    5554

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.39  E-value=8.5e-05  Score=69.43  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=49.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+..++.+.|+++.+ |+|+|+++|+++.  .+.+|++++|++ |+++..|++    +++.
T Consensus       511 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~----~~l~  566 (582)
T 3b60_A          511 LDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTH----SELL  566 (582)
T ss_dssp             CCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECH----HHHH
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCH----HHHH
Confidence            799999999999999975 9999999999864  357999999998 999999998    5554

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.31  E-value=7.4e-05  Score=62.75  Aligned_cols=55  Identities=9%  Similarity=0.054  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhh-hhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFD-ELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd-~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++.++++.|+++++   |||+++|++. ++.+.+| ++++|.+ |+++..|++    +++.
T Consensus       159 LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~----~~l~  214 (263)
T 2pjz_A          159 VDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV----SELL  214 (263)
T ss_dssp             CCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH----HHHH
T ss_pred             cCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH----HHHH
Confidence            799999999999999865   9999999985 5567899 9999998 999999998    5554

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.29  E-value=0.00013  Score=71.23  Aligned_cols=53  Identities=19%  Similarity=0.308  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~   56 (265)
                      ||+.+..++++.|+++++.|.|||++.|++.  ....+|+|++|      . ||+++..|++
T Consensus       839 LD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~-~G~Iv~~Gtp  897 (916)
T 3pih_A          839 LHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKE-GGYIVATGTP  897 (916)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGG-CCEEEEEESH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCC-CCEEEEEcCH
Confidence            7999999999999999989999999999984  45679999999      6 4999999999

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.28  E-value=0.00013  Score=68.08  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+..++.+.|+++. +|+|+|+++|+++. + +.+|++++|++ |+++..|++    +++.
T Consensus       508 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~-G~i~~~g~~----~el~  563 (578)
T 4a82_A          508 LDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN-GHIVETGTH----RELI  563 (578)
T ss_dssp             CCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET-TEEEEEECH----HHHH
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH----HHHH
Confidence            79999999999999985 47999999999974 3 56999999998 999999998    5554

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.24  E-value=0.00011  Score=60.76  Aligned_cols=52  Identities=17%  Similarity=0.252  Sum_probs=45.0

Q ss_pred             CchHHHHHHHHHHH---HHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVR---NTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~---~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+++.|+   ++. +|+|||+++|++.. + +.+|++++|.+ |+++..|++
T Consensus       158 LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~  212 (237)
T 2cbz_A          158 VDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSY  212 (237)
T ss_dssp             SCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECH
T ss_pred             cCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCH
Confidence            79999999999995   443 58999999999874 3 56999999998 999999987

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.21  E-value=0.00014  Score=69.10  Aligned_cols=53  Identities=23%  Similarity=0.285  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++.+.|.|||+++|++.  ....+|++++|      .+ |++++.|++
T Consensus       235 LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~-G~i~~~g~~  293 (670)
T 3ux8_A          235 LHQRDNDRLIATLKSMRDLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHG-GEVVAAGTP  293 (670)
T ss_dssp             CCGGGHHHHHHHHHHHHHTTCEEEEECCCHH--HHHHCSEEEEECSSSGGGC-CSEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEecccccccC-CEEEEecCH
Confidence            7999999999999999888999999999985  45679999999      65 999999998

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.17  E-value=0.00015  Score=64.27  Aligned_cols=52  Identities=15%  Similarity=0.225  Sum_probs=46.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.|+++. .+.|+|+++|++.  ....+|+|++|++ |+++..|++
T Consensus       186 LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~  237 (390)
T 3gd7_A          186 LDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSI  237 (390)
T ss_dssp             SCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSH
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCH
Confidence            79999999999999864 5899999999974  4567999999998 999999998

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.16  E-value=0.00011  Score=60.31  Aligned_cols=52  Identities=12%  Similarity=0.306  Sum_probs=44.1

Q ss_pred             CchHHHHHHHHH-HHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRT-VRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~-l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++. ++++. .|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus       161 LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~-G~i~~~g~~  213 (229)
T 2pze_A          161 LDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTF  213 (229)
T ss_dssp             SCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence            799999999997 46664 4899999999975 33 56999999998 999999987

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.13  E-value=0.00024  Score=69.47  Aligned_cols=53  Identities=25%  Similarity=0.480  Sum_probs=48.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc------cCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM------KQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l------~~gg~~~y~G~~   56 (265)
                      ||+....++++.|+++.+.|.|||+++|++  +....+|+|++|      . ||++++.|++
T Consensus       497 LD~~~~~~l~~~L~~L~~~G~TvivVtHd~--~~~~~aD~ii~lgpgag~~-~G~iv~~G~~  555 (916)
T 3pih_A          497 LHPRDTERLIKTLKKLRDLGNTVIVVEHDE--EVIRNADHIIDIGPGGGTN-GGRVVFQGTV  555 (916)
T ss_dssp             CCGGGHHHHHHHHHHTTTTTCEEEEECCCH--HHHHTCSEEEEEESSSGGG-CSEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHhCCEEEEEcCCcccC-CCEEEEeech
Confidence            799999999999999998899999999997  455679999999      6 4999999998

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.05  E-value=0.0003  Score=68.69  Aligned_cols=54  Identities=24%  Similarity=0.337  Sum_probs=48.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||+....++++.|++|.+.|.|||++.|++  +..+.+|+|++|.     +||++++.|++
T Consensus       537 Ldp~~~~~L~~~L~~Lr~~G~TVIvVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~  595 (972)
T 2r6f_A          537 LHQRDNDRLIATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTP  595 (972)
T ss_dssp             CCGGGHHHHHHHHHHHHTTTCEEEEECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECT
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCH
Confidence            799999999999999988999999999997  4467899999993     36999999998

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.00028  Score=66.09  Aligned_cols=60  Identities=13%  Similarity=0.061  Sum_probs=52.2

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC-CeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG-RQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g-g~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+..++++.|+++++ .|.|||+++|+.. ++..++|++++|..+ |+++..|+|    +++..
T Consensus       498 LD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p----~~~~~  559 (608)
T 3j16_B          498 LDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAP----ESLLT  559 (608)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCC----EEHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCCh----HHHhh
Confidence            799999999999999975 6999999999985 678889999999842 789999999    66654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.96  E-value=0.00025  Score=60.40  Aligned_cols=52  Identities=10%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             CchHHHHHHHHHH-HHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTV-RNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l-~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.+ +++. .|+|||+++|++. .+ ..+|++++|.+ |+++..|++
T Consensus       190 LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~-G~i~~~g~~  242 (290)
T 2bbs_A          190 LDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-GSSYFYGTF  242 (290)
T ss_dssp             CCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEEC-CeEEEeCCH
Confidence            7999999999964 5664 4899999999974 33 56999999998 999999998

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=96.91  E-value=0.00058  Score=52.13  Aligned_cols=43  Identities=19%  Similarity=0.248  Sum_probs=39.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK   45 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~   45 (265)
                      ||+.+...+.+.|+++.+.|+|||+++|++  ++.+.+|++++|.
T Consensus        94 LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ii~l~  136 (148)
T 1f2t_B           94 LDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRIS  136 (148)
T ss_dssp             TCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCEEEEEE
Confidence            799999999999999987899999999997  4668899999994

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.83  E-value=0.00045  Score=66.93  Aligned_cols=54  Identities=22%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||..+..++.+.|+++++.|.|||+++|++. .+ ..+|++++|.     ++|+++..|++
T Consensus       764 LD~~~~~~l~~lL~~L~~~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~  822 (842)
T 2vf7_A          764 LHPADVERLQRQLVKLVDAGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTP  822 (842)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence            7999999999999999989999999999974 44 7899999993     24999999998

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.81  E-value=0.00066  Score=66.35  Aligned_cols=54  Identities=22%  Similarity=0.330  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||..+..++++.|+++++.|.|||+++|++.  ....+|++++|.     ++|+++..|++
T Consensus       879 LD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~  937 (972)
T 2r6f_A          879 LHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTP  937 (972)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCH
Confidence            7999999999999999989999999999975  346899999993     24999999998

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.77  E-value=0.00071  Score=65.58  Aligned_cols=54  Identities=17%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc-----CCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK-----QGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~-----~gg~~~y~G~~   56 (265)
                      ||+.....+.+.|++|.+.|.|||++.|++  ++.+.+|+|++|.     +||++++.|++
T Consensus       412 Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~  470 (842)
T 2vf7_A          412 LHPADTEALLSALENLKRGGNSLFVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPP  470 (842)
T ss_dssp             CCGGGHHHHHHHHHHHHTTTCEEEEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECG
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCH
Confidence            799999999999999988999999999998  4667899999993     35999999998

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.75  E-value=0.00039  Score=70.85  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.|...+.+.|+++. +|+|+|++.|.++.  ...+|+|++|++ |+++..|++    +++.+
T Consensus      1248 LD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth----~eLl~ 1304 (1321)
T 4f4c_A         1248 LDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH----TQLMS 1304 (1321)
T ss_dssp             TTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH----HHHHH
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence            79999999999998865 49999999999974  466999999998 999999999    77664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.74  E-value=0.00096  Score=62.55  Aligned_cols=60  Identities=17%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC-CCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ-GRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~-gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||..++.++++.|+++++ .|.|||+++|++. .+...+|++++|.. .|+....|++    +++..
T Consensus       502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p----~~~~~  563 (607)
T 3bk7_A          502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPP----MGMRE  563 (607)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC----EEHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCH----HHHHh
Confidence            799999999999999985 6999999999975 67788999999982 1778888999    66654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.72  E-value=0.00079  Score=62.25  Aligned_cols=60  Identities=17%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccC-CCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQ-GRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~-gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||..+..++.+.|+++++ .|.|||+++|++. ++...+|++++|.. .|+++..|++    +++..
T Consensus       432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~----~~~~~  493 (538)
T 1yqt_A          432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPP----MGMRE  493 (538)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC----EEHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCH----HHHHh
Confidence            799999999999999985 6999999999975 67788999999984 1688889999    66654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.66  E-value=0.0006  Score=69.53  Aligned_cols=57  Identities=28%  Similarity=0.322  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+.+.|+++.+ |+|+|+++|+++  ..+.+|+|++|.+ |+++..|+.    +++.+
T Consensus       585 LD~~te~~i~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth----~eL~~  641 (1321)
T 4f4c_A          585 LDAESEGIVQQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDH----RALMA  641 (1321)
T ss_dssp             SCTTTHHHHHHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECH----HHHHT
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCH----HHHHH
Confidence            799999999999998864 999999999997  4578999999998 999999998    66653

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.56  E-value=0.0013  Score=58.41  Aligned_cols=50  Identities=14%  Similarity=0.162  Sum_probs=44.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc----cCCCeEEEec
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM----KQGRQEIYVG   54 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l----~~gg~~~y~G   54 (265)
                      ||..+...+.+.|++++ +|.|||+++|+|  ++.+.+|++++|    .+ |+++...
T Consensus       328 LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~~~-G~~~~~~  381 (415)
T 4aby_A          328 IGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQVED-GRTVSHV  381 (415)
T ss_dssp             CCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEEET-TEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEeccC-CceEEEE
Confidence            79999999999999998 599999999997  567889999999    86 7877544

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.46  E-value=0.0015  Score=66.50  Aligned_cols=52  Identities=21%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+...+.+.|++.. .|+|||+++|+++. + ..+|+|++|.+ |+++..|++
T Consensus      1202 lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A         1202 LDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp             CCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence            79999999999998854 59999999999984 4 55999999998 999999998

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.20  E-value=0.0017  Score=65.98  Aligned_cols=56  Identities=20%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+...+.+.|+++. +|+|+|+++|+++. + ..+|+|++|.+ |+++..|+.    +++.
T Consensus       557 LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~-G~i~~~g~~----~~l~  612 (1284)
T 3g5u_A          557 LDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDG-GVIVEQGNH----DELM  612 (1284)
T ss_dssp             SCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSS-SCCCCEECH----HHHH
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH----HHHH
Confidence            79999999999998875 59999999999863 3 55999999998 999999998    6654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.10  E-value=0.0048  Score=56.99  Aligned_cols=55  Identities=15%  Similarity=0.077  Sum_probs=46.4

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCC-CeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQG-RQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~g-g~~~y~G~~   56 (265)
                      ||..++.++++.|+++++ .|.|||+++|++. ++..++|+|++|..+ |.....|++
T Consensus       416 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~  472 (538)
T 3ozx_A          416 LDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSP  472 (538)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCCh
Confidence            799999999999999987 6999999999985 677889999999841 455556665

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.99  E-value=0.0045  Score=60.81  Aligned_cols=51  Identities=14%  Similarity=0.167  Sum_probs=45.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEE-EecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEI-YVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~-y~G~~   56 (265)
                      ||..+...+.+.|++   .|.|||+++|++. .+.+.+|++++|.+ |+++ +.|+.
T Consensus       579 LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~  630 (986)
T 2iw3_A          579 LDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF  630 (986)
T ss_dssp             CCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred             CCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence            799999999999998   5999999999974 67788999999998 8886 78987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.0035  Score=58.72  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=44.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEE
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIY   52 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y   52 (265)
                      ||+.++.++.+.|+++.+.|.|||+++|+.. ++...+|++++|.. |..+|
T Consensus       252 LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~-~~~~~  301 (608)
T 3j16_B          252 LDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYG-VPSVY  301 (608)
T ss_dssp             CCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEES-CTTTE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Ccccc
Confidence            7999999999999999988999999999985 67889999999985 65555

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.45  E-value=0.0053  Score=57.52  Aligned_cols=45  Identities=22%  Similarity=0.279  Sum_probs=41.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||+.++.++++.|+++.+.|.|||+++|++. .+...+|++++|..
T Consensus       259 LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~  303 (607)
T 3bk7_A          259 LDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYG  303 (607)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECC
Confidence            8999999999999999888999999999975 66778999999984

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=95.38  E-value=0.0082  Score=55.10  Aligned_cols=43  Identities=19%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||..++..+.+.|+++++ |.|||+++|+|.  +...+|++++|.+
T Consensus       430 ld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~~  472 (517)
T 4ad8_A          430 IGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVEK  472 (517)
T ss_dssp             CCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence            799999999999999998 999999999974  5577999999976

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.30  E-value=0.0077  Score=55.59  Aligned_cols=45  Identities=20%  Similarity=0.251  Sum_probs=41.3

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||+.++.++++.|+++.+.|.|||+++|+.. .+.+.+|++++|..
T Consensus       189 LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~  233 (538)
T 1yqt_A          189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYG  233 (538)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC
Confidence            8999999999999999888999999999975 77888999999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.20  E-value=0.011  Score=48.44  Aligned_cols=54  Identities=11%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++++.....|+.+-+ ..++.+.+|++++|.+ |+++..|++
T Consensus       176 LD~~~~~~i~~~l~~l~~~~g~tvi~vtH-d~~~~~~~d~i~~l~~-G~i~~~~~~  229 (235)
T 3tif_A          176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTH-DINVARFGERIIYLKD-GEVEREEKL  229 (235)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCCEEEEECS-CHHHHTTSSEEEEEET-TEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEcC-CHHHHHhCCEEEEEEC-CEEEEEcCh
Confidence            79999999999999998740000000000 0024588999999998 999999998

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.15  E-value=0.017  Score=49.50  Aligned_cols=53  Identities=23%  Similarity=0.220  Sum_probs=42.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhh--hhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDEL--FLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~--~~l~~gg~~~y~G~~   56 (265)
                      ||+.....+.+.|++++ .|.+||+++|++  ++.+.+|++  +++.+|+..+.....
T Consensus       254 LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~~v~~~~g~s~~~~~~~  308 (322)
T 1e69_A          254 LDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLHGVTMVNGVSAIVPVEV  308 (322)
T ss_dssp             CCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEEEEEESSSCEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEEEEEEeCCEEEEEEEEc
Confidence            79999999999999985 488999999996  467889986  778875566655554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.83  E-value=0.0088  Score=55.20  Aligned_cols=49  Identities=16%  Similarity=0.260  Sum_probs=42.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEE
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIY   52 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y   52 (265)
                      ||+.++.++.+.|+++.+ |+|||+++|+.. ++...+|++++|.. |...|
T Consensus       169 LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~-~~~~~  217 (538)
T 3ozx_A          169 LDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYG-ESSVY  217 (538)
T ss_dssp             CCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEE-ETTTE
T ss_pred             CCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecC-Ccccc
Confidence            799999999999999976 999999999985 78889999999985 54443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.37  E-value=0.017  Score=53.15  Aligned_cols=46  Identities=15%  Similarity=0.088  Sum_probs=39.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHH--------HHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIE--------IFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~--------~~~~fd~~~~l~~   46 (265)
                      ||+..+.++.++++++++.|.|||+++|++...        .-.++|++++|.+
T Consensus       156 lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          156 ASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            578889999999999988899999999998742        3455999999987

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.07  E-value=0.028  Score=47.35  Aligned_cols=45  Identities=13%  Similarity=0.231  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHhh-CCCeEEEEecCCC-H--------------------HHHHhhhhhhhccCCCe
Q 039187            4 RAASIVIRTVRNTVD-TGRTVVCTIHQPS-I--------------------EIFEAFDELFLMKQGRQ   49 (265)
Q Consensus         4 ~~~~~~~~~l~~l~~-~~~tvi~~ihqp~-~--------------------~~~~~fd~~~~l~~gg~   49 (265)
                      ....++++.|+++++ .|.|||+++|..+ .                    .+.+.+|+|++|.+ |+
T Consensus       170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~  236 (296)
T 1cr0_A          170 KMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQ  236 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C-
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Cc
Confidence            556789999999987 5999999999962 2                    67788999999998 54

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.52  E-value=0.011  Score=51.56  Aligned_cols=52  Identities=13%  Similarity=0.042  Sum_probs=46.1

Q ss_pred             CchHHHHHHHHHHHHHhh--CCC-----eEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD--TGR-----TVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~--~~~-----tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+....++.++++++.+  .|.     ||++++|+.+   ...+|+++++.+ |+++..|+.
T Consensus       192 ldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l  250 (347)
T 2obl_A          192 FPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTREL  250 (347)
T ss_dssp             BCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCH
Confidence            689999999999999985  487     8999999998   366999999998 999998887

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.19  E-value=0.013  Score=52.65  Aligned_cols=52  Identities=12%  Similarity=-0.003  Sum_probs=45.8

Q ss_pred             CchHHHHHHHHHHHHHhh---C-CC-----eEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD---T-GR-----TVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~---~-~~-----tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++.+.++++.+   . |+     ||++++|+.+   ...+|+++++.+ |+++..|.+
T Consensus       279 lD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~  339 (438)
T 2dpy_A          279 YPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL  339 (438)
T ss_dssp             CCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred             CCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence            689999999999999977   3 64     9999999998   467999999998 999998876

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=92.63  E-value=0.051  Score=43.45  Aligned_cols=45  Identities=9%  Similarity=0.093  Sum_probs=36.0

Q ss_pred             chHHHHHHHHHHHHHhh-CCCeEEEEecCCC-------HHHHHhhhhhhhccC
Q 039187            2 DARAASIVIRTVRNTVD-TGRTVVCTIHQPS-------IEIFEAFDELFLMKQ   46 (265)
Q Consensus         2 D~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~-------~~~~~~fd~~~~l~~   46 (265)
                      |+....++++.|+++++ .|.|||+++|...       ..+.+.+|++++|.+
T Consensus       139 d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~  191 (235)
T 2w0m_A          139 KPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR  191 (235)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence            66677899999999986 6999999999983       347788999999986

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=91.83  E-value=0.043  Score=42.77  Aligned_cols=51  Identities=14%  Similarity=0.154  Sum_probs=36.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecC-CCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQ-PSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihq-p~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+..... .+.++++...+.+||.|.|. +. ++-+.+|+|+  .+ |+++..|++
T Consensus       128 ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~-g~~~~~~~~  179 (189)
T 2bdt_A          128 MGERCLEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TN-PRFIFCMAG  179 (189)
T ss_dssp             -CGGGGHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HC-GGGSCC---
T ss_pred             CCHHHHHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hC-CcEEEeecC
Confidence            35545555 67777776668899999998 64 6778899999  76 999999998

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=90.44  E-value=0.09  Score=45.27  Aligned_cols=40  Identities=23%  Similarity=0.105  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCe
Q 039187            7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQ   49 (265)
Q Consensus         7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~   49 (265)
                      .++.+.|+.+...+.|+++|+|.++  ..+.+|++++|.+ |.
T Consensus       252 ~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~-g~  291 (330)
T 2pt7_A          252 SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSS-SN  291 (330)
T ss_dssp             THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHH-TS
T ss_pred             HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhc-CC
Confidence            4567788887655568999999987  5688999999998 54

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=90.19  E-value=0.16  Score=45.15  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      ||+.....+++.|+++...|.++|+++|++  +..+.+|+++.+..
T Consensus       368 LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~~  411 (430)
T 1w1w_A          368 LDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVYR  411 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEEE
Confidence            799999999999999876688999999984  56788999999874

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=90.15  E-value=0.22  Score=38.65  Aligned_cols=42  Identities=10%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhcc
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMK   45 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~   45 (265)
                      ||+.+...+.+.|+++++. .++|+++|++  .+.+.+|+++.+.
T Consensus        99 LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~~v~  140 (173)
T 3kta_B           99 LDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKIIGVS  140 (173)
T ss_dssp             CCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEEEEE
Confidence            7999999999999998764 5677888875  5678899998654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.00  E-value=0.058  Score=49.49  Aligned_cols=44  Identities=16%  Similarity=0.074  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHhhCCCeEEEEecCCC---------HHHHHhhhhhhhccCCCe
Q 039187            5 AASIVIRTVRNTVDTGRTVVCTIHQPS---------IEIFEAFDELFLMKQGRQ   49 (265)
Q Consensus         5 ~~~~~~~~l~~l~~~~~tvi~~ihqp~---------~~~~~~fd~~~~l~~gg~   49 (265)
                      ....+.++++.+.+.|.|||++.|++.         ..+..++|++++|.+ |+
T Consensus       392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge  444 (525)
T 1tf7_A          392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE  444 (525)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence            677888889998888999999999982         456678999999998 65

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=89.63  E-value=0.26  Score=48.43  Aligned_cols=53  Identities=6%  Similarity=-0.061  Sum_probs=45.2

Q ss_pred             CchHHHHHH-HHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIV-IRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~-~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.....+ ...++.+++ .|.++|+++|.+  ++.+++|++..+.+ |++...+..
T Consensus       754 lD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n-g~v~~~~~~  808 (934)
T 3thx_A          754 TSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN-LHVTALTTE  808 (934)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE-EEEEEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe-eEEEEEecC
Confidence            588877777 677788887 599999999994  67789999999998 999998887

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=89.48  E-value=0.14  Score=46.26  Aligned_cols=36  Identities=6%  Similarity=-0.088  Sum_probs=29.8

Q ss_pred             CCCeEEEEecCCC--H---HHHHhhhh-----hhhcc-CCCeEEEecCC
Q 039187           19 TGRTVVCTIHQPS--I---EIFEAFDE-----LFLMK-QGRQEIYVGLL   56 (265)
Q Consensus        19 ~~~tvi~~ihqp~--~---~~~~~fd~-----~~~l~-~gg~~~y~G~~   56 (265)
                      .|.|+|+++|+..  .   ++.+++|+     +++|. + |+++ .|++
T Consensus       287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~-G~iv-~g~~  333 (460)
T 2npi_A          287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL-DGVS-AVDD  333 (460)
T ss_dssp             TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC-TTCC-CCCH
T ss_pred             hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC-CcEE-ECCH
Confidence            4889999999987  2   45578999     99999 6 8888 8886

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=83.67  E-value=0.57  Score=40.69  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccC
Q 039187            7 SIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQ   46 (265)
Q Consensus         7 ~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~   46 (265)
                      .+.++.+.+++..|.+|++|+|..+..  +.+|+++.|..
T Consensus       208 ~e~~~~~~~~~~~G~~vl~t~H~~~~~--~~~dRli~l~~  245 (356)
T 3jvv_A          208 LETIRLALTAAETGHLVFGTLHTTSAA--KTIDRVVDVFP  245 (356)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCSSHH--HHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhcCCEEEEEEccChHH--HHHHHHhhhcC
Confidence            344666667777899999999998743  88999999976

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=81.97  E-value=0.66  Score=36.74  Aligned_cols=40  Identities=5%  Similarity=-0.002  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhh-CCCeEEEEecCCCH---HHHHhhhhhhhccC
Q 039187            7 SIVIRTVRNTVD-TGRTVVCTIHQPSI---EIFEAFDELFLMKQ   46 (265)
Q Consensus         7 ~~~~~~l~~l~~-~~~tvi~~ihqp~~---~~~~~fd~~~~l~~   46 (265)
                      .++++.|+++++ .|.|||+++|....   .+.+.+|+++.|.+
T Consensus       156 ~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~  199 (231)
T 4a74_A          156 AKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK  199 (231)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence            378888998887 59999999995442   35667899999987

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=81.07  E-value=1.3  Score=34.78  Aligned_cols=40  Identities=5%  Similarity=-0.026  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhh-CCCeEEEEecCCC------------HHHHHhhhhhhhccC
Q 039187            7 SIVIRTVRNTVD-TGRTVVCTIHQPS------------IEIFEAFDELFLMKQ   46 (265)
Q Consensus         7 ~~~~~~l~~l~~-~~~tvi~~ihqp~------------~~~~~~fd~~~~l~~   46 (265)
                      .++++.|+++++ .|.|||++.|...            ..+.+.+|.+++|.+
T Consensus       132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~  184 (220)
T 2cvh_A          132 SRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK  184 (220)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence            557777899987 5999999999765            256778999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.55
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.47
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.45
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.4
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.4
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.37
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.37
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.37
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.32
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.32
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.3
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.25
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.25
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.25
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.23
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.14
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.1
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.87
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	89.06

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=1.7e-08  Score=81.82  Aligned_cols=61  Identities=20%  Similarity=0.261  Sum_probs=56.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTRYF   67 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~yF   67 (265)
                      ||+.++.++.++++++++.|+|||+++|++. ++.+.||++++|.+ |++++.|++    +++.+-+
T Consensus       164 LD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~----~el~~~~  224 (238)
T d1vpla_         164 LDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV----EELKERY  224 (238)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH----HHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH----HHHHhcc
Confidence            7999999999999999999999999999986 78889999999998 999999999    7777655

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.47  E-value=4.2e-08  Score=80.36  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|++++++|.|||+++|++. ++.+++|||++|.+ |+++..|++
T Consensus       180 LD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~  233 (258)
T d1b0ua_         180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP  233 (258)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999999999999999986 67899999999998 999999999

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.45  E-value=4.1e-08  Score=79.60  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.++++++.|.|||+++|+.. ++.+++|++++|.+ |++++.|++
T Consensus       170 LD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~  223 (240)
T d1ji0a_         170 LAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKA  223 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999989999999999985 78899999999998 999999998

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=4.5e-08  Score=78.97  Aligned_cols=54  Identities=17%  Similarity=0.234  Sum_probs=51.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++..+.+.+++++++|.|||+++|++. ++.+.+|++++|++ |++++.|++
T Consensus       163 LD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~-G~iv~~G~~  216 (231)
T d1l7vc_         163 LDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRR  216 (231)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET-TEECCCSBH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999999999999999986 68899999999998 999999998

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.40  E-value=8.8e-08  Score=78.29  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.+++++++|.|||+++|+.. ++.+++|+|++|.+ |+++..|++
T Consensus       181 LD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~  234 (254)
T d1g6ha_         181 VAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRG  234 (254)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CEEEEEecH
Confidence            7999999999999999889999999999997 78899999999998 999999998

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.37  E-value=9.7e-08  Score=76.54  Aligned_cols=54  Identities=20%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|.|||+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       158 LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~  212 (229)
T d3d31a2         158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP  212 (229)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 6999999999986 78899999999998 999999999

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.37  E-value=9.7e-08  Score=77.03  Aligned_cols=54  Identities=19%  Similarity=0.230  Sum_probs=50.9

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++.+.|+++.+ .|.|||+++|++. ++.+++|++++|++ |+++..|++
T Consensus       167 LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~  221 (239)
T d1v43a3         167 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP  221 (239)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999987 5999999999985 78899999999998 999999999

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.3e-07  Score=76.01  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++.+ .|.|||+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       161 LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~  215 (232)
T d2awna2         161 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP  215 (232)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence            799999999999999976 6999999999985 78899999999998 999999999

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.5e-07  Score=75.99  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=50.7

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++.++ |.|||+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       171 LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G~~  225 (240)
T d3dhwc1         171 LDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTV  225 (240)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEEET
T ss_pred             CCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence            7999999999999999874 999999999985 67788999999998 999999999

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.32  E-value=1.5e-07  Score=75.93  Aligned_cols=54  Identities=20%  Similarity=0.207  Sum_probs=50.8

Q ss_pred             CchHHHHHHHHHHHHHhhC-CCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDT-GRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~-~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++.++ |.|||+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       170 LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~~G~~  224 (240)
T d1g2912         170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP  224 (240)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             cCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            7999999999999999874 999999999985 78899999999998 999999998

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.30  E-value=1.3e-07  Score=76.32  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=50.6

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.++.++++.|+++.+ .|.|||+++|++. ++.+++|++++|.+ |+++..|++
T Consensus       171 LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv~~g~~  225 (242)
T d1oxxk2         171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKP  225 (242)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred             CCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence            799999999999999976 5999999999985 78899999999998 999999998

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.25  E-value=2.4e-07  Score=74.59  Aligned_cols=58  Identities=17%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.++.++.+.++++.+ .|.|||+++|++. ++.+++|++++|.+ |+++..|.+    +++.
T Consensus       157 LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~----~el~  215 (240)
T d2onka1         157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL----KELF  215 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH----HHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecH----HHHh
Confidence            799999999999999987 5999999999985 78899999999998 999999998    6654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.2e-07  Score=75.73  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             CchHHHHHHHHHHHHHhh-CCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVD-TGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~-~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+..++++.|+++.+ .|+|||+++|+++  ..+.+|+|++|.+ |+++..|++    +++.+
T Consensus       182 LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G~iv~~Gt~----~eLl~  240 (251)
T d1jj7a_         182 LDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-GAIREGGTH----QQLME  240 (251)
T ss_dssp             CCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECH----HHHHH
T ss_pred             cChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence            799999999999999987 5999999999974  5578999999998 999999999    66653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=2.3e-07  Score=75.08  Aligned_cols=52  Identities=23%  Similarity=0.417  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCC
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLL   56 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~   56 (265)
                      ||+.+..++++.|+++.+ |+|+|+++|+++  ..+.+|+|++|.+ |+++..|++
T Consensus       170 LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~~-G~Iv~~G~~  221 (241)
T d2pmka1         170 LDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEK-GKIVEQGKH  221 (241)
T ss_dssp             CCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEET-TEEEEEECH
T ss_pred             cCHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCH
Confidence            799999999999999975 899999999995  3478999999998 999999998

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.23  E-value=2.5e-07  Score=75.46  Aligned_cols=57  Identities=19%  Similarity=0.250  Sum_probs=50.8

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+++.|+++.+ |+|||+++|+++  ..+.+|+|++|.+ |+++..|++    +++.+
T Consensus       183 LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~~-G~Iv~~G~~----~eLl~  239 (253)
T d3b60a1         183 LDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGTH----SELLA  239 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEET-TEEEEEECH----HHHHH
T ss_pred             CCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence            799999999999999975 899999999986  3478999999998 999999999    66653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.14  E-value=4.6e-07  Score=73.85  Aligned_cols=57  Identities=19%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+...+++.|+++.+ ++|+|+++|+++  ....+|+|++|.+ |+++..|++    +++.+
T Consensus       185 LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~~-G~iv~~G~~----~eLl~  241 (255)
T d2hyda1         185 LDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIEN-GHIVETGTH----RELIA  241 (255)
T ss_dssp             CCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEET-TEEEEEECH----HHHHH
T ss_pred             CCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHHh
Confidence            799999999999999875 899999999986  3578999999998 999999998    66543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.10  E-value=2.2e-07  Score=75.28  Aligned_cols=56  Identities=23%  Similarity=0.363  Sum_probs=49.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLT   64 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~   64 (265)
                      ||+.+..++++.|++++ +|+|||+++|+++  ....+|+|++|.+ |+++..|++    +++.
T Consensus       170 LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G~iv~~G~~----~eLl  225 (242)
T d1mv5a_         170 LDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKH----NELV  225 (242)
T ss_dssp             SCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCH----HHHH
T ss_pred             cCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-CEEEEECCH----HHHH
Confidence            79999999999999997 4999999999984  4467999999998 999999998    6655

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.6e-06  Score=71.58  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=48.5

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhccCCCeEEEecCCCCCcchHHH
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLMKQGRQEIYVGLLGRHSCHLTR   65 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l~~gg~~~y~G~~~~~~~~~~~   65 (265)
                      ||+.+..++++.+.+....|+|+|+++|++  +..+.+|+|++|.+ |+++..|++    +++..
T Consensus       189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~----~eL~~  246 (281)
T d1r0wa_         189 LDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTF----SELQS  246 (281)
T ss_dssp             SCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECH----HHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEEechH--HHHHhCCEEEEEEC-CEEEEECCH----HHHhc
Confidence            799999999986544445689999999987  45688999999998 999999999    77653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.06  E-value=0.077  Score=44.33  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=35.0

Q ss_pred             CchHHHHHHHHHHHHHhhCCCeEEEEecCCCHHHHHhhhhhhhc
Q 039187            1 LDARAASIVIRTVRNTVDTGRTVVCTIHQPSIEIFEAFDELFLM   44 (265)
Q Consensus         1 LD~~~~~~~~~~l~~l~~~~~tvi~~ihqp~~~~~~~fd~~~~l   44 (265)
                      ||+.....+.+.|++++..+.-+|+++|+|  .+.+.+|+.+.+
T Consensus       367 Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V  408 (427)
T d1w1wa_         367 LDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV  408 (427)
T ss_dssp             CCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEEEeCCH--HHHHhcccEEEE
Confidence            799999999999999976666699999998  577888886644