Citrus Sinensis ID: 039196

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MNPCFDKQSCSEISTCASTSGQSGDDPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRACSPSTSPNTSLLSHSFMFVR
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
cccEEEcccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccEEEEEEEEEEEEEEEEHHcccccccHcccccHHHHHHHHHHHHHccccccccccccccccHEEEEccccccEEEEEcHHHHHHHHHHHHHHHEcccccHHHHccccccccccccEEcc
mnpcfdkqscseistcastsgqsgddpetgsnamSIRNKGllciphdidlnpARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSigpisgahvnpAVTIAFAVVghfplskvpfYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLitgpvsggsmnparslgpaivswnfsdiwIYIIGPTIGAVAGGFVYRflrlrpracspstspntsllshsfmfvr
mnpcfdkqscseistcastsgqsgddpETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRacspstspntsllshsfmfvr
MNPCFDKQSCSEISTCASTSGQSGDDPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRACspstspntsllshsFMFVR
***************************************GLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRP**********************
**********************************************DIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLR********************FM***
******************************SNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRA********TSLLSHSFMFVR
**************************PETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRACS*ST***************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
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MNPCFDKQSCSEISTCASTSGQSGDDPETGSNAMSIRNKGLLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRACSPSTSPNTSLLSHSFMFVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
Q8LAI1275 Probable aquaporin NIP7-1 yes no 0.847 0.887 0.587 4e-81
Q8W036283 Probable aquaporin NIP4-2 no no 0.791 0.805 0.397 1e-41
Q9FIZ9283 Putative aquaporin NIP4-1 no no 0.861 0.876 0.355 8e-41
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi no no 0.784 0.768 0.388 9e-39
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.784 0.763 0.393 1e-38
Q9C6T0323 Aquaporin NIP3-1 OS=Arabi no no 0.791 0.705 0.368 4e-38
P49173270 Probable aquaporin NIP-ty N/A no 0.760 0.811 0.384 6e-38
Q0IWF3311 Aquaporin NIP3-1 OS=Oryza yes no 0.753 0.697 0.388 2e-37
Q9SV84304 Probable aquaporin NIP5-1 no no 0.774 0.733 0.376 3e-37
Q9AT74301 Aquaporin NIP2-3 OS=Zea m N/A no 0.767 0.734 0.367 3e-37
>sp|Q8LAI1|NIP71_ARATH Probable aquaporin NIP7-1 OS=Arabidopsis thaliana GN=NIP7-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  301 bits (771), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/252 (58%), Positives = 192/252 (76%), Gaps = 8/252 (3%)

Query: 26  DPETGSNAMSIRNKG-------LLCIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTV 78
           D E GS   ++R++          C+P+DIDLNP R+V+AELVGTFILM  VCG+++ST 
Sbjct: 11  DQEAGSTPSTLRDEDHPSRQRLFGCLPYDIDLNPLRIVMAELVGTFILMFSVCGVISSTQ 70

Query: 79  LTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQ 138
           L+ G VGLLEYA TAGL+++V+VYSIG ISGAH+NP++TIAFAV G FP S+VP YI AQ
Sbjct: 71  LSGGHVGLLEYAVTAGLSVVVVVYSIGHISGAHLNPSITIAFAVFGGFPWSQVPLYITAQ 130

Query: 139 TAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLAC-EAQCFG 197
           T G+   T +G+ VYG+ +++M T+PA  CVSAF+VEL+ATSI+VFLA++L C   Q  G
Sbjct: 131 TLGATAATLVGVSVYGVNADIMATKPALSCVSAFFVELIATSIVVFLASALHCGPHQNLG 190

Query: 198 NLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGF 257
           NL+GFV+G  I L VLITGP+SGGSMNPARSLGPA+V+W+F D+WIY+  P IGA+ G  
Sbjct: 191 NLTGFVIGTVISLGVLITGPISGGSMNPARSLGPAVVAWDFEDLWIYMTAPVIGAIIGVL 250

Query: 258 VYRFLRLRPRAC 269
            YR + L+ R C
Sbjct: 251 TYRSISLKTRPC 262
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FIZ9|NIP41_ARATH Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1 Back     alignment and function description
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C6T0|NIP31_ARATH Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2 Back     alignment and function description
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function description
>sp|Q0IWF3|NIP31_ORYSJ Aquaporin NIP3-1 OS=Oryza sativa subsp. japonica GN=NIP3-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9SV84|NIP51_ARATH Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT74|NIP23_MAIZE Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
255552267298 Aquaporin NIP1.1, putative [Ricinus comm 0.996 0.963 0.628 3e-93
297736989293 unnamed protein product [Vitis vinifera] 0.989 0.972 0.621 2e-91
224100335242 aquaporin, MIP family, NIP subfamily [Po 0.836 0.995 0.676 1e-90
356502764296 PREDICTED: probable aquaporin NIP7-1-lik 0.958 0.932 0.618 7e-88
359477328238 PREDICTED: probable aquaporin NIP7-1 [Vi 0.822 0.995 0.683 3e-87
356536804381 PREDICTED: probable aquaporin NIP7-1-lik 0.916 0.692 0.627 2e-85
6862914274 putative major intrinsic protein [Arabid 0.847 0.890 0.585 4e-80
297833354275 hypothetical protein ARALYDRAFT_477911 [ 0.847 0.887 0.587 2e-79
18397472275 putative aquaporin NIP7-1 [Arabidopsis t 0.847 0.887 0.587 2e-79
21593384275 putative major intrinsic protein [Arabid 0.847 0.887 0.587 2e-79
>gi|255552267|ref|XP_002517178.1| Aquaporin NIP1.1, putative [Ricinus communis] gi|223543813|gb|EEF45341.1| Aquaporin NIP1.1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/296 (62%), Positives = 222/296 (75%), Gaps = 9/296 (3%)

Query: 1   MNPCFDKQSCSEISTCASTSGQSGD-DPETGSNAMSI------RNKGLLCIPHDIDLNPA 53
           M    ++Q   +    AS+S  S D   +TGSNA+S       +     C P ++DLNPA
Sbjct: 3   MKHLLEEQPSPDTFMNASSSDASRDCSQDTGSNALSTNGDIFAKYSNFGCFPKELDLNPA 62

Query: 54  RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
           RMV+AE +GTFILM CVCGIMAST LT G+VGLLEYAATAGLT+IVLV++IGPISGAHVN
Sbjct: 63  RMVLAEFMGTFILMFCVCGIMASTQLTGGQVGLLEYAATAGLTVIVLVFAIGPISGAHVN 122

Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFW 173
           PAVTIAFA  GHFP SKVPFY++AQT GSVL TY   LVYGIK++LM+TRP Q C SAF 
Sbjct: 123 PAVTIAFATFGHFPWSKVPFYVVAQTVGSVLATYAAKLVYGIKADLMVTRPVQGCNSAFS 182

Query: 174 VELLATSIIVFLAASLACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAI 233
           VE + T +++FLAASLA +A    +LSGFV+G++IGLAVLI+GPVSGGS+NPARSLGPAI
Sbjct: 183 VEFITTFLMMFLAASLAYQAAT-RHLSGFVIGLSIGLAVLISGPVSGGSLNPARSLGPAI 241

Query: 234 VSWNFSDIWIYIIGPTIGAVAGGFVYRFLRL-RPRACSPSTSPNTSLLSHSFMFVR 288
           VSWNF DIW+YII PT GAVAG  ++  LR+ RP     + SPNT LL HS  F R
Sbjct: 242 VSWNFKDIWVYIIAPTTGAVAGALMFHVLRIQRPPCSPTTPSPNTGLLGHSINFAR 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736989|emb|CBI26190.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100335|ref|XP_002311835.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222851655|gb|EEE89202.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356502764|ref|XP_003520186.1| PREDICTED: probable aquaporin NIP7-1-like [Glycine max] Back     alignment and taxonomy information
>gi|359477328|ref|XP_002277721.2| PREDICTED: probable aquaporin NIP7-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536804|ref|XP_003536924.1| PREDICTED: probable aquaporin NIP7-1-like [Glycine max] Back     alignment and taxonomy information
>gi|6862914|gb|AAF30303.1|AC018907_3 putative major intrinsic protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297833354|ref|XP_002884559.1| hypothetical protein ARALYDRAFT_477911 [Arabidopsis lyrata subsp. lyrata] gi|297330399|gb|EFH60818.1| hypothetical protein ARALYDRAFT_477911 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18397472|ref|NP_566271.1| putative aquaporin NIP7-1 [Arabidopsis thaliana] gi|62512177|sp|Q8LAI1.2|NIP71_ARATH RecName: Full=Probable aquaporin NIP7-1; AltName: Full=NOD26-like intrinsic protein 7-1; Short=AtNIP7;1 gi|91806383|gb|ABE65919.1| major intrinsic family protein/MIP family protein [Arabidopsis thaliana] gi|332640822|gb|AEE74343.1| putative aquaporin NIP7-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21593384|gb|AAM65333.1| putative major intrinsic protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.847 0.887 0.591 3.4e-77
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.722 0.734 0.421 7.3e-43
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.722 0.734 0.406 4e-42
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.722 0.702 0.416 1.1e-39
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.722 0.707 0.416 1.8e-39
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.746 0.707 0.387 6.1e-39
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.729 0.704 0.371 8.9e-38
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.746 0.665 0.377 3e-37
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.732 0.691 0.383 8.3e-35
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.774 0.774 0.346 1.8e-32
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 149/252 (59%), Positives = 193/252 (76%)

Query:    26 DPETGSNAMSIRNKG------LL-CIPHDIDLNPARMVIAELVGTFILMLCVCGIMASTV 78
             D E GS   ++R++       L  C+P+DIDLNP R+V+AELVGTFILM  VCG+++ST 
Sbjct:    11 DQEAGSTPSTLRDEDHPSRQRLFGCLPYDIDLNPLRIVMAELVGTFILMFSVCGVISSTQ 70

Query:    79 LTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQ 138
             L+ G VGLLEYA TAGL+++V+VYSIG ISGAH+NP++TIAFAV G FP S+VP YI AQ
Sbjct:    71 LSGGHVGLLEYAVTAGLSVVVVVYSIGHISGAHLNPSITIAFAVFGGFPWSQVPLYITAQ 130

Query:   139 TAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAASLACEA-QCFG 197
             T G+   T +G+ VYG+ +++M T+PA  CVSAF+VEL+ATSI+VFLA++L C   Q  G
Sbjct:   131 TLGATAATLVGVSVYGVNADIMATKPALSCVSAFFVELIATSIVVFLASALHCGPHQNLG 190

Query:   198 NLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGF 257
             NL+GFV+G  I L VLITGP+SGGSMNPARSLGPA+V+W+F D+WIY+  P IGA+ G  
Sbjct:   191 NLTGFVIGTVISLGVLITGPISGGSMNPARSLGPAVVAWDFEDLWIYMTAPVIGAIIGVL 250

Query:   258 VYRFLRLRPRAC 269
              YR + L+ R C
Sbjct:   251 TYRSISLKTRPC 262
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA;ISS
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0035445 "borate transmembrane transport" evidence=IDA
GO:0046715 "borate transmembrane transporter activity" evidence=IDA
GO:0006863 "purine nucleobase transport" evidence=RCA
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LAI1NIP71_ARATHNo assigned EC number0.58730.84720.8872yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 1e-141
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 6e-52
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 6e-50
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 1e-49
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-47
pfam00230218 pfam00230, MIP, Major intrinsic protein 3e-47
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 1e-44
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-42
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 1e-28
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 1e-26
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 8e-23
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 2e-19
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 5e-19
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-05
pfam00230218 pfam00230, MIP, Major intrinsic protein 3e-04
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information 
 Score =  399 bits (1026), Expect = e-141
 Identities = 187/274 (68%), Positives = 223/274 (81%), Gaps = 8/274 (2%)

Query: 17  ASTSGQSGD-DPETGSNAMSI-------RNKGLLCIPHDIDLNPARMVIAELVGTFILML 68
            S+S +S D D E GS A ++       R +   C+P+D+DLNPARMV+AE+VGTFILM 
Sbjct: 1   MSSSARSRDVDQEAGSTASTLNGDDHPKRQRLFGCLPYDMDLNPARMVLAEMVGTFILMF 60

Query: 69  CVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPL 128
           CVCGI+AST L+ GEVGLLEYAATAGLT++V+V+SIG ISGAHVNP+VTIAFA  GHFP 
Sbjct: 61  CVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGHFPW 120

Query: 129 SKVPFYIMAQTAGSVLGTYIGILVYGIKSNLMITRPAQHCVSAFWVELLATSIIVFLAAS 188
           SKVP YI AQT GSVL TY+G+ VYG+K++LM T+PAQ C SAFWVE +AT I++FLAAS
Sbjct: 121 SKVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSAFWVEFIATFIVMFLAAS 180

Query: 189 LACEAQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGP 248
           L  + Q  G+LSGFV+G+AIGLAVLITGPVSGGSMNPARSLGPAIVSW+F DIWIYI  P
Sbjct: 181 LTSQPQSLGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWDFKDIWIYITAP 240

Query: 249 TIGAVAGGFVYRFLRLRPRACSPSTSPNTSLLSH 282
           TIGAVAG  ++  LRLR + CSP++SPNTSLL H
Sbjct: 241 TIGAVAGALMFHLLRLRTQPCSPNSSPNTSLLLH 274

Length = 274
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00184 296 aquaporin NIP1; Provisional 99.63
PLN00026 298 aquaporin NIP; Provisional 99.62
PLN00182283 putative aquaporin NIP4; Provisional 99.59
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.57
PLN00183 274 putative aquaporin NIP7; Provisional 99.57
PLN00167 256 aquaporin TIP5; Provisional 99.55
PLN00166 250 aquaporin TIP2; Provisional 99.53
PTZ00016 294 aquaglyceroporin; Provisional 99.49
PRK05420 231 aquaporin Z; Provisional 99.49
PLN00027 252 aquaporin TIP; Provisional 99.48
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.48
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.43
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.42
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.36
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.11
COG2116265 FocA Formate/nitrite family of transporters [Inorg 95.07
PRK11562268 nitrite transporter NirC; Provisional 94.03
PRK10805285 formate transporter; Provisional 90.12
PRK09713282 focB putative formate transporter; Provisional 89.46
TIGR00790239 fnt formate/nitrite transporter. symport. HCO2 - e 85.16
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.2e-51  Score=370.42  Aligned_cols=227  Identities=40%  Similarity=0.698  Sum_probs=198.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCC
Q 039196           47 DIDLNPARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHF  126 (288)
Q Consensus        47 ~~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~  126 (288)
                      +++..++|++++||+|||+|+|++++++......+...++..++++||+++++.+++++++||||+|||||+++++.|++
T Consensus        48 ~~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~  127 (296)
T PLN00184         48 SVSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRF  127 (296)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCC
Confidence            45677899999999999999999998876543322234567889999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHhHHHHHHHHHHHHHhcCcC--------ceeeccCCcchhHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 039196          127 PLSKVPFYIMAQTAGSVLGTYIGILVYGIKS--------NLMITRPAQHCVSAFWVELLATSIIVFLAASLACEAQCFGN  198 (288)
Q Consensus       127 ~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~--------~~~~~~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~~~~  198 (288)
                      +|.++++|+++|++|+++|+++++.+++...        ....+.|..+..++++.|+++|++|+++++.+..+++..+.
T Consensus       128 ~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~  207 (296)
T PLN00184        128 PLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGE  207 (296)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCc
Confidence            9999999999999999999999999886431        12345566788999999999999999999988666655556


Q ss_pred             hhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCCCCCCCC
Q 039196          199 LSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPRACSPST  273 (288)
Q Consensus       199 ~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~~~~~~~  273 (288)
                      +.|+.||+++.+++++.+++||++|||||+|||+++...|.++||||+||++|+++|+++|+++...+.++.+.+
T Consensus       208 ~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~  282 (296)
T PLN00184        208 LAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREIT  282 (296)
T ss_pred             chHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhc
Confidence            789999999999999999999999999999999999999999999999999999999999999998776654433

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information
>TIGR00790 fnt formate/nitrite transporter Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 2e-20
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 3e-20
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 4e-20
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 1e-19
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-18
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-18
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-18
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 4e-18
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 4e-18
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 4e-18
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 5e-18
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-17
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 6e-17
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 6e-17
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-16
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 1e-14
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 2e-13
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 3e-13
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-13
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-13
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 4e-13
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 4e-13
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-13
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-13
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 6e-13
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 5e-12
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 5e-12
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 5e-12
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 8e-12
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 4e-07
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure 
Iteration: 1

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 108/220 (49%), Gaps = 10/220 (4%)
Query: 54  RMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVN 113
           R + AE   T  L     G+ AS     G + +L+ A   GL +  LV ++G ISGAHVN
Sbjct: 11  RAIFAEFFAT--LFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVN 68
Query: 114 PAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYI--GILVYGIKSNLMIT--RPAQHCV 169
           PAVT AF V     L +   Y++AQ  G+V G  +   +    ++ NL +    P     
Sbjct: 69  PAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVG 128
Query: 170 SAFWVELLATSIIVFLAASLACEAQCFGNLS--GFVVGVAIGLAVLITGPVSGGSMNPAR 227
            A  VE+  T   V    +   E +  G L      VG ++ L  L     +G  MNPAR
Sbjct: 129 QATIVEIFLTLQFVLCIFATYDERRN-GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 187
Query: 228 SLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPR 267
           S  PAI++ NF++ W+Y +GP IGA  G  +Y FL L PR
Sbjct: 188 SFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFL-LFPR 226
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 3e-62
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-06
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-61
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-06
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 2e-61
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-06
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-61
2o9g_A234 Aquaporin Z; integral membrane protein, structural 6e-61
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 8e-59
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 4e-06
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-57
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 4e-06
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 5e-57
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 7e-56
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 7e-06
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-55
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 2e-05
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-04
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-54
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-07
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 1e-06
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 4e-54
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 4e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 5e-51
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 6e-05
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
 Score =  199 bits (507), Expect = 3e-62
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 7/219 (3%)

Query: 54  RMVIAELVGTFILMLCVCG--IMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAH 111
           + V AE +   I +L   G  I          V ++  +   GL+I  +V   G ISG H
Sbjct: 53  KAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGH 112

Query: 112 VNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYI--GILVYGIKSNLMITRPAQH-- 167
           +NPAVT+A        ++K  FYI AQ  G+++G  I   +    +   L +T    +  
Sbjct: 113 INPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLT 172

Query: 168 CVSAFWVELLATSIIVFLAASLACE-AQCFGNLSGFVVGVAIGLAVLITGPVSGGSMNPA 226
                 VEL+ T  +VF   +   +            +G ++ +  L     +G SMNPA
Sbjct: 173 AGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPA 232

Query: 227 RSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLR 265
           RS GPA++  N+ + WIY +GP IGAV  G +Y ++   
Sbjct: 233 RSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCP 271
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.58
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.55
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.46
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.46
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.44
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.42
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.41
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.41
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.4
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.39
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.39
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.38
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.29
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 91.07
4fc4_A261 Nitrite transporter NIRC; alpha-helical inner memb 88.02
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1e-52  Score=383.16  Aligned_cols=223  Identities=30%  Similarity=0.429  Sum_probs=194.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHH
Q 039196           45 PHDIDLNPARMVIAELVGTFILMLCVCGIMASTVLT--RGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAV  122 (288)
Q Consensus        45 ~~~~~~~~~r~~~~EfigT~~lvf~~~~~~~~~~~~--~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l  122 (288)
                      .+...+.+||++++||+|||+|+|+++++++.....  ....+++.++++||+++++++|+++++||||+|||||+++++
T Consensus        44 ~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l  123 (340)
T 3iyz_A           44 KGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVC  123 (340)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHH
Confidence            334457899999999999999999999998754221  223467889999999999999999999999999999999999


Q ss_pred             hcCCCCCchhHHHHHHhHHHHHHHHHHHHHhcCcC--ceeec--cCCcchhHHHHHHHHHHHHHHHHHhhccccccc-CC
Q 039196          123 VGHFPLSKVPFYIMAQTAGSVLGTYIGILVYGIKS--NLMIT--RPAQHCVSAFWVELLATSIIVFLAASLACEAQC-FG  197 (288)
Q Consensus       123 ~g~~~~~~~~~yi~aQ~~Ga~~g~~~~~~~~~~~~--~~~~~--~p~~s~~~~~~~E~~~T~~Lv~~v~~~~~~~~~-~~  197 (288)
                      .|+++|.+++.|+++|++||++|+++++.++++..  ..+.+  .|..+..++++.|+++||+|+++++...++++. ..
T Consensus       124 ~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~  203 (340)
T 3iyz_A          124 TRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVT  203 (340)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCcc
Confidence            99999999999999999999999999999987652  22333  344788999999999999999999988655542 24


Q ss_pred             ChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhhcCCCceeeeeecchHHHHHHHHHHHHhhcCCC
Q 039196          198 NLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFLRLRPR  267 (288)
Q Consensus       198 ~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~~~~~~~wvy~v~p~~Ga~la~~~~~~~~~~~~  267 (288)
                      ...|+.||+++.+.+..++++||++|||||+|||+++.++|.++|+||+||++|+++|+++|++++.++.
T Consensus       204 ~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~  273 (340)
T 3iyz_A          204 GSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV  273 (340)
T ss_pred             cchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCCh
Confidence            5689999999988888888999999999999999999999999999999999999999999999987654
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 2e-37
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-05
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 1e-36
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 9e-33
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 8e-04
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 3e-30
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  131 bits (329), Expect = 2e-37
 Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 12/221 (5%)

Query: 54  RMVIAELVGTFILMLCVCG-------IMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGP 106
           R V+AE +   + +    G        + S   T      ++ +   GL+I  L  S+G 
Sbjct: 12  RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71

Query: 107 ISGAHVNPAVTIAFAVVGHFPLSKVPFYIMAQTAGSVLGTYIGILVYG----IKSNLMIT 162
           ISGAH+NPAVT+   +     + +   YI+AQ  G+++ T I   +          L   
Sbjct: 72  ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131

Query: 163 RPAQHCVSAFWVELLATSIIVFLAASLACEAQC-FGNLSGFVVGVAIGLAVLITGPVSGG 221
            P  +      +E++ T  +V    +     +   G      +G ++ L  L+    +G 
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGC 191

Query: 222 SMNPARSLGPAIVSWNFSDIWIYIIGPTIGAVAGGFVYRFL 262
            +NPARS G ++++ NF D WI+ +GP IGA     +Y F+
Sbjct: 192 GINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI 232
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.5
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.4
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.34
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.31
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.3e-49  Score=349.16  Aligned_cols=215  Identities=31%  Similarity=0.462  Sum_probs=192.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHhcCCCCCch
Q 039196           52 PARMVIAELVGTFILMLCVCGIMASTVLTRGEVGLLEYAATAGLTIIVLVYSIGPISGAHVNPAVTIAFAVVGHFPLSKV  131 (288)
Q Consensus        52 ~~r~~~~EfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~  131 (288)
                      +.|++++||+|||+|+|+++++.......+...+.+.+++++|+++++.+++++++||||+|||||+++++.|+++|.+.
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~~   81 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKV   81 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGGH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcHHHh
Confidence            57899999999999999999988777666666778899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhHHHHHHHHHHHHHhcCcC--------------------ceeeccCC--cchhHHHHHHHHHHHHHHHHHhhc
Q 039196          132 PFYIMAQTAGSVLGTYIGILVYGIKS--------------------NLMITRPA--QHCVSAFWVELLATSIIVFLAASL  189 (288)
Q Consensus       132 ~~yi~aQ~~Ga~~g~~~~~~~~~~~~--------------------~~~~~~p~--~s~~~~~~~E~~~T~~Lv~~v~~~  189 (288)
                      +.|+++|++|+++|+++.+.++++..                    ..+++.|.  .+..++++.|+++|++|+++++..
T Consensus        82 ~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~il~~  161 (254)
T d1fx8a_          82 IPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILAL  161 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999876541                    12345554  688999999999999999999998


Q ss_pred             cccccc--CCChhhHHHHHHHHHHHHHhccCCCCccchhhhHHHHHhh-------------cCCCceeeeeecchHHHHH
Q 039196          190 ACEAQC--FGNLSGFVVGVAIGLAVLITGPVSGGSMNPARSLGPAIVS-------------WNFSDIWIYIIGPTIGAVA  254 (288)
Q Consensus       190 ~~~~~~--~~~~~~~~ig~~v~~~~~~~~~~sG~~lNPA~~~g~al~~-------------~~~~~~wvy~v~p~~Ga~l  254 (288)
                      .++++.  .+...|+.+|+++...++..+++||+++||||+|||+++.             ++|+++|+||++|++|+++
T Consensus       162 ~~~~~~~~~~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP~~Ga~i  241 (254)
T d1fx8a_         162 TDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIV  241 (254)
T ss_dssp             HCTTSSSCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTTHHHHHH
T ss_pred             hcCccCCCcccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHHHHHHHH
Confidence            776652  3456899999999999999999999999999999999985             4689999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 039196          255 GGFVYRFLRLRP  266 (288)
Q Consensus       255 a~~~~~~~~~~~  266 (288)
                      |+++||+++.+|
T Consensus       242 a~~~y~~l~~~~  253 (254)
T d1fx8a_         242 GAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHHTGGG
T ss_pred             HHHHHHHHHhhh
Confidence            999999998765
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure