Citrus Sinensis ID: 039198

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQILSNLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccHHHHHHHHcccccccccccccccHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHcccccccccHHHHHHHHHHHHHcccccHHHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccHHHHHcccHHHHHHHHccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHc
Coil and Loop (DISEMBL)
meslqisdeinnikkgpwtpeedQKLIDYIRKhghgswralpklaglnrcgkscrlrwtnylrpdikrgkfsEEEEQLIVNLHAVLGNKWSaiatrlpgrtdneIKNFWNTHLKKKLLQmgidpvthrprtdlNNVLANLPQLLAAANFAVgnlmnvpnswdinALKLQSDATQLAKIQLLHNIIQIlstspppnieassllgsslgdnYNQLFEFLRMNshqfhgnngngngnvpfgftpqepNQILSNllnfdsasqlphlgdytntstsntsqlgsssyanniptsnqlpalvsvsSADCSALNQQIetkinpndisnpsstlttfeanwgdfmddeasQSYWRDFIE
Flexible Loop (DISEMBL)
meslqisdeinnikkgpwtpeeDQKLIDYIRKHGHgswralpklaglnrcgkscrlrwTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIAtrlpgrtdNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQILSNLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSADCSALNQQIetkinpndisnpsSTLTTFEANWGDFMDDEASQSYWRDFIE
Low Complexity Region (SEG)
MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDlnnvlanlpqllaaanfaVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHgnngngngnVPFGFTPQEPNQILSNLLNFDSASQLPHLGDYtntstsntsqlgsssYANNIPTSNQLPALVSVSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE
Disordered region (IsUnstruct)
************************KLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILST**************SLGDNYNQLFEFLRMNSHQFH***********FGF*******ILSNLLN**************************************************************************TFEANWGDFM**************
Disordered Region (DISOPRED)
*ESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPV******************************************************************************************************************************************************************************************************STLTTFEANWGDFMDDEASQSYWRDFIE
Disordered Region (DISEMBL)
MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQILSNLLNFDSASQLPHLGDYTN***********SSYANNIPTSNQLPALVSVSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE
Disordered Region (DISPRO)
****QISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSPPPNIEASSLLGS*LGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQILSNLLNFDSASQLPHLGDYTNTST*************************************************************WGDF*D**ASQSYWRDFIE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQILSNLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q8GWP0	360	Transcription factor MYB3	no	no	0.937	0.913	0.418	5e-63
Q8LPH6	352	Transcription factor MYB8	no	no	0.333	0.332	0.726	2e-51
Q9SPG2	366	Transcription factor MYB2	no	no	0.384	0.368	0.608	1e-50
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.333	0.397	0.735	3e-50
Q9S9K9	257	Transcription factor MYB3	no	no	0.341	0.466	0.716	3e-50
O49608	274	Transcription factor MYB3	no	no	0.404	0.518	0.601	4e-50
Q38851	236	Transcription repressor M	no	no	0.415	0.618	0.608	8e-50
Q9SPG5	338	Transcription factor MYB7	no	no	0.333	0.346	0.717	3e-49
Q9FLR1	336	Transcription factor MYB2	no	no	0.333	0.348	0.717	3e-49
P81393	232	Myb-related protein 308 O	N/A	no	0.336	0.508	0.711	4e-49

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  241 bits (616), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 151/361 (41%), Positives = 208/361 (57%), Gaps = 32/361 (8%)

Query: 6   ISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
             D+   +KKGPW PEED KL  YI ++G+G+WR+LPKLAGLNRCGKSCRLRW NYLRPD
Sbjct: 6   CCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPD 65

Query: 66  IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPV 125
           I+RGKFS+ EE  IV LHA+LGNKWS IA  LPGRTDNEIKN+WNTH++KKLLQMGIDPV
Sbjct: 66  IRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGIDPV 125

Query: 126 THRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNII 185
           TH PRT+  + + ++ Q+LAAA    G   N     +  AL+       + K+QL+H ++
Sbjct: 126 THEPRTNDLSPILDVSQMLAAA-INNGQFGNNNLLNNNTALE------DILKLQLIHKML 178

Query: 186 QILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPN 245
           QI++    PNI  SS   + L      +      NS     +   G      G TP+  +
Sbjct: 179 QIITPKAIPNI--SSFKTNLLNPKPEPVVNSFNTNSVNPKPDPPAGLFINQSGITPEAAS 236

Query: 246 QIL---SNLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSAD 302
             +    N+ +    +QLP L   +  S  NT++ G+S       T+ ++   +      
Sbjct: 237 DFIPSYENVWDGFEDNQLPGLVTVSQESL-NTAKPGTS-------TTTKVNDHIRTGMMP 288

Query: 303 CSALNQQIET------KINPNDIS--NPS----STLTTFEANWGDFMDDEASQSYWRDFI 350
           C   +Q +ET       ++P   S  +PS    S+ + F  +W  F+DDE S S W+ F+
Sbjct: 289 CYYGDQLLETPSTGSVSVSPETTSLNHPSTAQHSSGSDFLEDWEKFLDDETSDSCWKSFL 348

Query: 351 E 351
           +
Sbjct: 349 D 349

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 102/117 (87%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           ++KG W+PEED+KL++YI +HGHG W ++PKLAGL RCGKSCRLRW NYLRPD+KRG FS
Sbjct: 12  LRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFS 71

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRP 129
           ++EE LI+ LHA LGN+WS IATRLPGRTDNEIKNFWN+ LKKKL + GIDP TH+P
Sbjct: 72  QDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDPTTHKP 128

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 109/148 (73%), Gaps = 13/148 (8%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           +KKG WT EED+KLI YI  HG G WR +P+ AGL RCGKSCRLRWTNYL+P+IKRG+FS
Sbjct: 12  LKKGAWTTEEDKKLISYIHDHGEGGWRDIPQKAGLKRCGKSCRLRWTNYLKPEIKRGEFS 71

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD 132
            EEEQ+I+ LHA  GNKWS IA  LP RTDNEIKN+WNTHLKK+L++ GIDPVTH+P   
Sbjct: 72  SEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKRLMEQGIDPVTHKP--- 128

Query: 133 LNNVLANLPQLLAAANFAVGNLMNVPNS 160
                     L +++N  V   +N PN+
Sbjct: 129 ----------LASSSNPTVDENLNSPNA 146

Major regulator of aliphatic glucosinolates (GLSs) biosynthesis, both short- or long-chained. Together with MYB29/HAG3 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae and Spodoptera exigua) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 101/117 (86%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           +KKGPWT EED+KLI +I  +G   WRA+PKLAGL RCGKSCRLRWTNYLRPD+KRG  S
Sbjct: 12  VKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLS 71

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRP 129
           + EE+L+++LH+ LGN+WS IA RLPGRTDNEIKN WNTH+KKKLL+MGIDPVTH P
Sbjct: 72  DAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEP 128

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 102/120 (85%)

Query: 9   EINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 68
           E  ++ KG WT EEDQ L+DYIRKHG G WR+LP+ AGL RCGKSCRLRW NYLRPD+KR
Sbjct: 8   EKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKR 67

Query: 69  GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR 128
           G F+EEE++LI+ LH++LGNKWS IA RLPGRTDNEIKN+WNTH+K+KLL  GIDP +HR
Sbjct: 68  GNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHR 127

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  199 bits (505), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 114/158 (72%), Gaps = 16/158 (10%)

Query: 9   EINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 68
           E ++  KG WT EED KLI YI+ HG G WR+LP+ AGL RCGKSCRLRW NYLRPD+KR
Sbjct: 8   EKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKR 67

Query: 69  GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR 128
           G F+ EE+ LI+ LH++LGNKWS IATRLPGRTDNEIKN+WNTH+K+KLL+ GIDP THR
Sbjct: 68  GNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHR 127

Query: 129 P--------------RTD--LNNVLANLPQLLAAANFA 150
           P              +T+  L  +L+  PQL   ANF 
Sbjct: 128 PINETKTSQDSSDSSKTEDPLVKILSFGPQLEKIANFG 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  197 bits (502), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 111/148 (75%), Gaps = 2/148 (1%)

Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEE 74
           KG WT EEDQ+L+DYIR HG G WR+LPK AGL RCGKSCRLRW NYLRPD+KRG F+++
Sbjct: 14  KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDD 73

Query: 75  EEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLN 134
           E+Q+I+ LH++LGNKWS IA RLPGRTDNEIKN+WNTH+K+KLL  GIDP THR   +  
Sbjct: 74  EDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESK 133

Query: 135 NVLAN--LPQLLAAANFAVGNLMNVPNS 160
            V +   +P    A  ++  NL   P +
Sbjct: 134 TVSSQVVVPIQNDAVEYSFSNLAVKPKT 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SPG5|MYB76_ARATH Transcription factor MYB76 OS=Arabidopsis thaliana GN=MYB76 PE=1 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 97/117 (82%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           +KKG WT EED+KLI YI  HG G WR +P+ AGL RCGKSCRLRWTNYL+PDIKRG+FS
Sbjct: 12  LKKGAWTTEEDKKLISYIHDHGEGGWRDIPEKAGLKRCGKSCRLRWTNYLKPDIKRGEFS 71

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRP 129
            EEEQ+I+ LHA  GNKWS IA  LP RTDNE+KN+WNTHLKK+L+  GIDPVTH+P
Sbjct: 72  YEEEQIIIMLHASRGNKWSVIARHLPKRTDNEVKNYWNTHLKKRLIDDGIDPVTHKP 128

Plays a role in determining the spatial distribution of aliphatic glucosinolates (GLSs) within the leaf, mostly short chained. Together with MYB28/HAG1 and MYB29/HAG3, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLR1|MYB29_ARATH Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 96/117 (82%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           +KKG WT EED+KLI YI +HG G WR +P+ AGL RCGKSCRLRW NYL+PDIKRG+FS
Sbjct: 12  LKKGAWTAEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYLKPDIKRGEFS 71

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRP 129
            EEEQ+I+ LHA  GNKWS IA  LP RTDNEIKN+WNTHLKK L+  GIDPVTH+P
Sbjct: 72  YEEEQIIIMLHASRGNKWSVIARHLPKRTDNEIKNYWNTHLKKLLIDKGIDPVTHKP 128

Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  195 bits (496), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 98/118 (83%)

Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEE 74
           KG WT EED +L+ YIR HG G WR+LPK AGL RCGKSCRLRW NYLRPD+KRG F+EE
Sbjct: 14  KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 75  EEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD 132
           E++LI+ LH++LGNKWS IA RLPGRTDNEIKN+WNTH+++KLL  GIDP THR   D
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSIND 131

Transcription factor.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
359489983	341	PREDICTED: transcription factor MYB39-li	0.920	0.947	0.613	1e-105
30024598	348	transcription factor MYB101 [Lotus japon	0.925	0.933	0.571	1e-96
297737290	268	unnamed protein product [Vitis vinifera]	0.752	0.985	0.586	6e-94
356543313	352	PREDICTED: transcription factor MYB39 [G	0.948	0.946	0.558	5e-90
30024604	345	transcription factor MYB101 [Glycine max	0.931	0.947	0.562	4e-89
224144721	300	predicted protein [Populus trichocarpa]	0.814	0.953	0.590	5e-89
356541038	337	PREDICTED: transcription factor MYB39-li	0.914	0.952	0.564	4e-87
224074299	335	predicted protein [Populus trichocarpa]	0.880	0.922	0.524	9e-84
297742074	303	unnamed protein product [Vitis vinifera]	0.826	0.957	0.536	1e-82
224138964	336	predicted protein [Populus trichocarpa]	0.888	0.928	0.522	3e-82

>gi|359489983|ref|XP_003634006.1| PREDICTED: transcription factor MYB39-like [Vitis vinifera]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/349 (61%), Positives = 262/349 (75%), Gaps = 26/349 (7%)

Query: 7   SDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66
           S E + +KKGPWTPEEDQKL++YI++HGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI
Sbjct: 4   SPEESGLKKGPWTPEEDQKLVEYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 63

Query: 67  KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVT 126
           KRGKFS+EEE  I+NLH+VLGNKWSAIAT LPGRTDNEIKNFWNTHLKKKL+QMGIDPVT
Sbjct: 64  KRGKFSDEEENTIINLHSVLGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLMQMGIDPVT 123

Query: 127 HRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQ 186
           HRPRTDL N+LANLPQLLAAAN +  +L+N  N WD NAL+LQSDATQLAK+ LLHN++Q
Sbjct: 124 HRPRTDL-NILANLPQLLAAANLST-SLVN--NPWD-NALRLQSDATQLAKLHLLHNLLQ 178

Query: 187 ILSTSP---PPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQE 243
           +L TSP   PPN+EA +L G+           F+   ++++  +N   NG +  G  P +
Sbjct: 179 VLGTSPTALPPNMEAGNLFGTP---------SFMDHQAYEYPTSNPQLNGLI--GLHPTD 227

Query: 244 PNQILSNLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSADC 303
           P Q LS++ +F    Q P   +Y     S     G+++  + + +   +PALVS +S + 
Sbjct: 228 PAQTLSSIPSF-VPPQEPGF-EYQTMENSKVCA-GNNNDGDELGSLYAIPALVS-ASPEP 283

Query: 304 SALNQQIETKINP-NDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE 351
           S +NQ+ E KI P +DISNPSST TTFEA WG+ MDDEAS SYWRD I+
Sbjct: 284 STVNQK-EKKIEPAHDISNPSSTSTTFEA-WGELMDDEASDSYWRDLID 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30024598|dbj|BAC75671.1| transcription factor MYB101 [Lotus japonicus]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/359 (57%), Positives = 247/359 (68%), Gaps = 34/359 (9%)

Query: 6   ISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
             DEI  +KKGPWTPEED  L+DYI+KHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD
Sbjct: 6   CCDEIG-LKKGPWTPEEDAILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64

Query: 66  IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPV 125
           IKRGKF+EEEEQLI+NLHAVLGNKWSAIA  LPGRTDNEIKNFWNTHLKKKLLQMG+DPV
Sbjct: 65  IKRGKFTEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPV 124

Query: 126 THRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDIN-ALKLQSDATQLAKIQLLHNI 184
           THRPR D  N+L+NL Q LAA N       +  N+ D N AL+LQSDATQLAK+QLL NI
Sbjct: 125 THRPRLDHLNLLSNLQQFLAATNMVT----SFTNTLDSNAALRLQSDATQLAKLQLLQNI 180

Query: 185 IQILSTSPPPNIEASSLLG--SSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQ 242
           +Q+L T+P  N+E  + LG  SS+ D +  L E L +N  +      +       GF   
Sbjct: 181 LQVLGTNPASNLELLNQLGPSSSISDTF--LHEALGLNQSKLQELYKSS-----IGFP-- 231

Query: 243 EPNQILSNLLNFDSASQLPHLGDYTNTSTSNTS----------QLGSSSYANNIPTSNQL 292
             +Q LSNL   +    L     Y N  ++  S          QL +++ ++ IP  N L
Sbjct: 232 -SHQNLSNLQTLEVPHHLQQ--HYMNGGSTINSCMQSRKVVDEQLDATNSSSTIPL-NSL 287

Query: 293 PALVSVSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE 351
           P LVS +S  CS + +++E K+NPN+ SNPSST TTFE  WGDFM +E +  YW+D I+
Sbjct: 288 PNLVS-ASPQCSTV-KEMENKVNPNECSNPSSTSTTFEM-WGDFMCEEVNDDYWKDLID 343

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737290|emb|CBI26491.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 203/346 (58%), Positives = 234/346 (67%), Gaps = 82/346 (23%)

Query: 7   SDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66
           S E + +KKGPWTPEEDQKL++YI++HGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI
Sbjct: 4   SPEESGLKKGPWTPEEDQKLVEYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 63

Query: 67  KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVT 126
           KRGKFS+EEE  I+NLH+VLGNKWSAIAT LPGRTDNEIKNFWNTHLKKKL+QMGIDPVT
Sbjct: 64  KRGKFSDEEENTIINLHSVLGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLMQMGIDPVT 123

Query: 127 HRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQ 186
           HRPRTDL N+LANLPQLLAAAN +  +L+N  N WD NAL+LQSDATQLAK+ LLHN++Q
Sbjct: 124 HRPRTDL-NILANLPQLLAAANLST-SLVN--NPWD-NALRLQSDATQLAKLHLLHNLLQ 178

Query: 187 ILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQ 246
             +++P                              Q +G           G  P +P Q
Sbjct: 179 YPTSNP------------------------------QLNGL---------IGLHPTDPAQ 199

Query: 247 ILSNLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSADCSAL 306
            LSN                         +LG S YA        +PALVS +S + S +
Sbjct: 200 TLSN-------------------------ELG-SLYA--------IPALVS-ASPEPSTV 224

Query: 307 NQQIETKINP-NDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE 351
           NQ+ E KI P +DISNPSST TTFEA WG+ MDDEAS SYWRD IE
Sbjct: 225 NQK-EKKIEPAHDISNPSSTSTTFEA-WGELMDDEASDSYWRDLIE 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543313|ref|XP_003540106.1| PREDICTED: transcription factor MYB39 [Glycine max]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 204/365 (55%), Positives = 246/365 (67%), Gaps = 32/365 (8%)

Query: 1   MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTN 60
           M     SDE N +KKGPWTPEED+ L+DYI+KHGHGSWRALPK AGLNRCGKSCRLRWTN
Sbjct: 2   MGRTPCSDE-NGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKHAGLNRCGKSCRLRWTN 60

Query: 61  YLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQM 120
           YLRPDIKRGKFSEEEEQLI+NLHAVLGNKWSAIA  LPGRTDNEIKNFWNTHLKKKLLQM
Sbjct: 61  YLRPDIKRGKFSEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQM 120

Query: 121 GIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDI-NALKLQSDATQLAKIQ 179
           G+DPVTHRPR+D  N+L+NL QLLAA N     + N+ N+WD  NAL+LQSDATQLAK+Q
Sbjct: 121 GLDPVTHRPRSDHLNLLSNLQQLLAATNI----VSNLTNTWDTNNALRLQSDATQLAKLQ 176

Query: 180 LLHNIIQILS-TSPPPNIEASSLLG---SSLGDNYNQLFEFLRMNSHQFHG-NNGNGNGN 234
           LL NI+ +L  T+P  N++  +  G   SSL D +  L E L +N  +     NG    N
Sbjct: 177 LLQNILHVLGDTTPTSNLDLLNPFGPSSSSLPDGF--LNEVLGLNQSKLQNLYNGYSAQN 234

Query: 235 VP--FGFTPQEPNQILS------NLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNI 286
            P    F P    Q+L       +  + DS+   P  GD          QL    Y+++ 
Sbjct: 235 QPNLQSFEPPHQQQVLPTGNQHMDGGSIDSSCMKPEKGD---------EQL-DVPYSSST 284

Query: 287 PTSNQLPALVSVSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYW 346
           P  N LP LVS S    + +  Q+E K+ PN+ S+PSS+ +T    WGDFM +E S +YW
Sbjct: 285 PF-NSLPNLVSASPECSTHVLMQMENKVMPNECSDPSSSTSTNFEMWGDFMYEEVSDAYW 343

Query: 347 RDFIE 351
           +D I+
Sbjct: 344 KDLID 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30024604|dbj|BAC75674.1| transcription factor MYB101 [Glycine max]

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 202/359 (56%), Positives = 244/359 (67%), Gaps = 32/359 (8%)

Query: 7   SDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66
           SDE N +KKGPWTPEED+ L+DYI+KHGHGSWRALPK AGLNRCGKSCRLRWTNYLRPDI
Sbjct: 1   SDE-NGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKHAGLNRCGKSCRLRWTNYLRPDI 59

Query: 67  KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVT 126
           KRGKFSEEEEQLI+NLHAVLGNKWSAIA  LPGRTDNEIKNFWNTHLKKKLLQMG+DPVT
Sbjct: 60  KRGKFSEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVT 119

Query: 127 HRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDI-NALKLQSDATQLAKIQLLHNII 185
           HRPR+D  N+L+NL QLLAA N     + N+ N+WD  NAL+LQSDATQLAK+QLL NI+
Sbjct: 120 HRPRSDHLNLLSNLQQLLAATNI----VSNLTNTWDTNNALRLQSDATQLAKLQLLQNIL 175

Query: 186 QILS-TSPPPNIEASSLLG---SSLGDNYNQLFEFLRMNSHQFHG-NNGNGNGNVP--FG 238
            +L  T+P  N++  +  G   SSL D +  L E L +N  +     NG    N P    
Sbjct: 176 HVLGDTTPTSNLDLLNPFGPSSSSLPDGF--LNEVLGLNQSKLQNLYNGYSAQNQPNLQS 233

Query: 239 FTPQEPNQILS------NLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQL 292
           F P    Q+        +  + DS+   P  GD          QL    Y+++ P  N L
Sbjct: 234 FEPPHQQQVQPTGNQHMDGGSIDSSCMKPEKGD---------DQL-DVPYSSSTPF-NSL 282

Query: 293 PALVSVSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE 351
           P LVS S    + +  Q+E K+ PN+ S+PSS+ +T    WGDFM +E S +YW+D I+
Sbjct: 283 PNLVSASPECSTHVLMQMENKVMPNECSDPSSSTSTNFEMWGDFMYEEVSDAYWKDLID 341

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144721|ref|XP_002325389.1| predicted protein [Populus trichocarpa] gi|222862264|gb|EEE99770.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 202/342 (59%), Positives = 231/342 (67%), Gaps = 56/342 (16%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           +KKGPWTPEEDQKLIDY++KHGHGSWRALP LAGLNRCGKSCRLRWTNYLRPDIKRG FS
Sbjct: 12  LKKGPWTPEEDQKLIDYVQKHGHGSWRALPMLAGLNRCGKSCRLRWTNYLRPDIKRGNFS 71

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD 132
           EEE+Q+I++ H VLGNKWSAIA  LPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD
Sbjct: 72  EEEQQMIIDFHQVLGNKWSAIAQHLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD 131

Query: 133 LNNVLANLPQLL-AAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTS 191
           L N++ANLPQLL AAANF+  NLMN+P  WD NA+K Q DAT   K+QLLHNI+Q+L   
Sbjct: 132 L-NIIANLPQLLAAAANFS--NLMNIP--WD-NAIKAQVDAT---KLQLLHNILQVLGN- 181

Query: 192 PPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQILSNL 251
                    LL        +Q             G N     N P    PQ+P       
Sbjct: 182 -------KGLLKCGEDGLSSQ-------------GINAQAQSNFPNIDAPQQP------- 214

Query: 252 LNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSADCSALNQQIE 311
             F   + +      + + T N+ QL  SSYA   PTSN LP LVS +S +CS+ N    
Sbjct: 215 --FSDHNPIKD----SKSRTHNSDQL-VSSYA--FPTSNTLPQLVS-ASPECSSAN---- 260

Query: 312 TKINPND-ISNPS-STLTTFEANWGDFMDDEASQSYWRDFIE 351
             INPND ISNPS +T TTFEA W + MDD A+ +YW D IE
Sbjct: 261 -TINPNDIISNPSNATSTTFEA-WRNLMDDGANDNYWIDIIE 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541038|ref|XP_003538990.1| PREDICTED: transcription factor MYB39-like [Glycine max]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 196/347 (56%), Positives = 241/347 (69%), Gaps = 26/347 (7%)

Query: 7   SDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66
           SDE N +KKGPWTPEED+ L+DYI+KHGHGSWRALPKLAGLNRCGKSCRLRW+NYLRPDI
Sbjct: 10  SDE-NGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWSNYLRPDI 68

Query: 67  KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVT 126
           KRGKFSEEE+QLI+NLH+VLGNKWSAIA  LPGRTDNEIKNFWNTHLKKKLLQMG+DPVT
Sbjct: 69  KRGKFSEEEQQLIINLHSVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVT 128

Query: 127 HRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDI--NALKLQSDATQLAKIQLLHNI 184
           HRPR+D  N+L+NL QLLAA N  V N++   N+WD   NAL+LQSD    AK+QLL NI
Sbjct: 129 HRPRSDHLNLLSNLQQLLAATNI-VSNILT--NTWDSTHNALRLQSD----AKLQLLQNI 181

Query: 185 IQILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEP 244
           +Q+    P  N++  +  G S G   N++    + N  Q   NNG+       GF    P
Sbjct: 182 LQV----PTSNLDLLNPFGPSDG-FLNEVLGLNQSNKLQNLYNNGSSTD----GF----P 228

Query: 245 NQILSNLLNFDSASQLPHL--GDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSAD 302
           +Q   N+ +F++  Q   L  G   N S+  + +L  + Y+++    N LP LVS S   
Sbjct: 229 SQNQPNIQSFEAPHQQQTLPNGGSINRSSMKSEKL-DAPYSSSTAFVNSLPNLVSASPEY 287

Query: 303 CSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDF 349
           CS    Q+E K+NPN+ S+PSST T     WGDFM +E S +YW+D 
Sbjct: 288 CSTHVMQMENKVNPNEFSDPSSTSTNNFEMWGDFMYEEVSDAYWKDL 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074299|ref|XP_002304344.1| predicted protein [Populus trichocarpa] gi|222841776|gb|EEE79323.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (810), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 185/353 (52%), Positives = 233/353 (66%), Gaps = 44/353 (12%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           +KKGPWTP+ED+KLIDYI+++GH +W+ALP LAGLNRCGKSCRLRWTNYLRPDIKRGKFS
Sbjct: 13  LKKGPWTPDEDEKLIDYIKRNGHENWKALPMLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD 132
           EEEE++IVNLH+ LGNKWS IA  LPGRTDNEIKNFWNTH++KKLLQMGIDP TH+PRTD
Sbjct: 73  EEEERVIVNLHSALGNKWSRIANHLPGRTDNEIKNFWNTHIRKKLLQMGIDPNTHKPRTD 132

Query: 133 LNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSP 192
           L++ L NL QLL AA F      N+ + W+ N LKLQ++ATQLA IQLL N++Q+++T+ 
Sbjct: 133 LSHFL-NLSQLLGAAQFG-----NIASPWN-NFLKLQAEATQLANIQLLRNLLQMMNTNT 185

Query: 193 PPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHG-NNGNGNGNVPFGFTPQEPNQILSNL 251
             NIE++SLLGS               N HQF G  NG    N        EP  I  +L
Sbjct: 186 LTNIESNSLLGS--------------QNPHQFRGLVNGTTISNT------NEPTTISQDL 225

Query: 252 LN----------FDSASQL--PHLGDYTNTSTSNTSQLGSSSYANNIPTS-NQLPALVSV 298
           +N          F + S+L     G +     +      SSSY   I T  N LPALVS 
Sbjct: 226 VNPPVTPQVHNDFQAISKLWASCEGGFGPEGLNINGDTLSSSYG--IQTEQNPLPALVSA 283

Query: 299 SSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE 351
           S++  ++++ Q E K +P++ S  + T T FEA W   +DD+   SYW D +E
Sbjct: 284 STSPVTSIDYQTERKGDPSNYSTGTPTSTIFEA-WEKLIDDDNYSSYWNDILE 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742074|emb|CBI33861.3| unnamed protein product [Vitis vinifera]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 182/339 (53%), Positives = 223/339 (65%), Gaps = 49/339 (14%)

Query: 12  NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 71
           ++KKGPWTP+EDQKL+DYI++HGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF
Sbjct: 11  SLKKGPWTPDEDQKLVDYIKRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 70

Query: 72  SEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRT 131
           S+EEE++I+ LH+VLGNKWS IA  LPGRTDNEIKNFWNTH+KKK LQMG+DP TH+PR 
Sbjct: 71  SDEEERIIIKLHSVLGNKWSRIAVHLPGRTDNEIKNFWNTHVKKKFLQMGLDPNTHQPRA 130

Query: 132 DLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTS 191
           DLN+ L NL QLLA ANF+  NL +       +AL+LQ+DAT+L KIQLL NI+QI++T 
Sbjct: 131 DLNS-LVNLSQLLATANFS--NLTSPLE----DALRLQTDATRLTKIQLLQNILQIINT- 182

Query: 192 PPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNGNGNVPFGFTPQEPNQILSNL 251
                      GS+L  N       +   SHQ+               TP   N      
Sbjct: 183 -----------GSTLSRN-------IEGASHQW-------------SLTPGSHN------ 205

Query: 252 LNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVSVSSADCSALNQQIE 311
            ++ + S      D    S  +      SS + +I     LPALVSVS  +CS++NQ  E
Sbjct: 206 -DYQAISNSWACIDGGFGSEVHNFNNNCSSSSYDIRAEQPLPALVSVS-PECSSVNQ-TE 262

Query: 312 TKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFI 350
           +K+N   IS  SST   FEA WG+ MDDE S SYW+D +
Sbjct: 263 SKMNLPCISTHSSTSNIFEA-WGELMDDETSVSYWKDIL 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138964|ref|XP_002326734.1| predicted protein [Populus trichocarpa] gi|222834056|gb|EEE72533.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 185/354 (52%), Positives = 231/354 (65%), Gaps = 42/354 (11%)

Query: 12  NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 71
           + KKGPWTPEED+KL+DYI+++GH +W+ALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF
Sbjct: 11  DFKKGPWTPEEDEKLVDYIKRNGHENWKALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 70

Query: 72  SEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRT 131
           SEEEE++IVNLH+VLGNKWS IA  LPGRTDNEIKNFWNTH++KKLLQMGIDP TH+PRT
Sbjct: 71  SEEEERVIVNLHSVLGNKWSRIANHLPGRTDNEIKNFWNTHIRKKLLQMGIDPNTHKPRT 130

Query: 132 DLNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTS 191
           DL++ L NL Q L AA F      N  +  D N L+LQ+DATQLA IQLL N++QI++T+
Sbjct: 131 DLDHFL-NLSQFLGAAQFG-----NTADPLD-NFLQLQADATQLANIQLLRNLLQIMNTN 183

Query: 192 PPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHGNNGNG----NGNVPFG--------- 238
              N+E +SLLGS    N N LFE L           GNG    N   PF          
Sbjct: 184 TLTNLENNSLLGSQ---NPN-LFEGL-----------GNGATICNTKEPFNPVSQDLFNP 228

Query: 239 -FTPQEPNQILSNLLNFDSASQLPHLGDYTNTSTSNTSQLGSSSYANNIPTSNQLPALVS 297
             TPQ P      + N  ++ +    G +     +  +   SSSY       N LPALVS
Sbjct: 229 LATPQAPPNDFQAISNLWASYE----GGFGPEGLNINNNSLSSSYGTQT-DQNPLPALVS 283

Query: 298 VSSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE 351
            S++  +++  Q E+K NP++ S  + T T FE  W   +DD+   SYW+D +E
Sbjct: 284 ASTSPGTSIVNQKESKGNPSNYSTGTPTYTVFEG-WEKLIDDDYYSSYWKDILE 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.495	0.542	0.657	3.2e-73
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.555	0.580	0.623	6.7e-73
TAIR|locus:2145402	334	MYB92 "myb domain protein 92"	0.555	0.583	0.603	3.8e-62
TAIR|locus:2023951	365	MYB93 "myb domain protein 93"	0.703	0.676	0.525	6.2e-62
TAIR|locus:2171845	310	MYB53 "myb domain protein 53"	0.512	0.580	0.638	2.7e-59
TAIR|locus:505006490	360	MYB39 "myb domain protein 39"	0.948	0.925	0.390	1.2e-58
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.353	0.354	0.798	3.7e-55
TAIR|locus:2132957	282	MYB41 "myb domain protein 41"	0.347	0.432	0.778	5.4e-55
TAIR|locus:2115708	324	MYB74 "myb domain protein 74"	0.347	0.376	0.786	1.6e-54
TAIR|locus:2162585	319	MYB49 "myb domain protein 49"	0.353	0.388	0.758	3.7e-54

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
 Identities = 121/184 (65%), Positives = 143/184 (77%)

Query:     8 DEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 67
             DE + +KKGPWTPEEDQKLI++IRKHGHGSWRALPK AGLNRCGKSCRLRWTNYLRPDIK
Sbjct:     8 DE-SGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLRPDIK 66

Query:    68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTH 127
             RG F+ EEEQ I+NLH++LGNKWS+IA  LPGRTDNEIKN+WNTH++KKL+QMGIDPVTH
Sbjct:    67 RGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMGIDPVTH 126

Query:   128 RPRTDXXXXXXXXXXXXXXXXXXVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQI 187
             RPRTD                    NL+N+  +       +Q DAT +AK QLLH++IQ+
Sbjct:   127 RPRTDHLNVLAALPQLLAAANF--NNLLNLNQN-------IQLDATSVAKAQLLHSMIQV 177

Query:   188 LSTS 191
             LS +
Sbjct:   178 LSNN 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 129/207 (62%), Positives = 151/207 (72%)

Query:     8 DEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 67
             DE N +KKGPWT EED KLID+I+KHGHGSWRALPK AGLNRCGKSCRLRWTNYLRPDIK
Sbjct:     8 DE-NGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNYLRPDIK 66

Query:    68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTH 127
             RG F+EEEEQ I+NLH++LGNKWS+IA  LPGRTDNEIKN+WNTHL+KKLLQMGIDPVTH
Sbjct:    67 RGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMGIDPVTH 126

Query:   128 RPRTDXXXXXXXXXXXXXXXXXXVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQI 187
             RPRTD                    +L+N+  +       +Q DAT LAK QLLH +IQ+
Sbjct:   127 RPRTDHLNVLAALPQLIAAANF--NSLLNLNQN-------VQLDATTLAKAQLLHTMIQV 177

Query:   188 LSTSPPPNIEASSLLGSSLGDNYNQLF 214
             LST+   N    S   S++ ++   LF
Sbjct:   178 LSTNN--NTTNPSFSSSTMQNSNTNLF 202

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2145402 MYB92 "myb domain protein 92" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 122/202 (60%), Positives = 147/202 (72%)

Query:     6 ISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
             ISD+ + +KKGPWTP+ED+KL++Y++KHGH SWRALPKLAGLNRCGKSCRLRWTNYLRPD
Sbjct:     6 ISDD-SGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNYLRPD 64

Query:    66 IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPV 125
             IKRG+FS +EEQ I+NLH+VLGNKWS IA +LPGRTDNEIKNFWNTHLKKKL+QMG DP+
Sbjct:    65 IKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKKLIQMGFDPM 124

Query:   126 THRPRTDXXXXXXXXXXXXXXXXXXVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNII 185
             THRPRTD                  V      P   +   LKLQ   T++AK+QL   ++
Sbjct:   125 THRPRTDIFSGLSQLMSLSSNLRGFVDLQQQFPIDQEHTILKLQ---TEMAKLQLFQYLL 181

Query:   186 Q--ILSTSPPPN-IEASSLLGS 204
             Q   +S +  PN  +  SLL S
Sbjct:   182 QPSSMSNNVNPNDFDTLSLLNS 203

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2023951 MYB93 "myb domain protein 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 143/272 (52%), Positives = 164/272 (60%)

Query:     8 DEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 67
             DE N +KKGPWTPEEDQKLIDYI KHGHGSWRALPKLA LNRCGKSCRLRWTNYLRPDIK
Sbjct:     8 DE-NGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYLRPDIK 66

Query:    68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTH 127
             RGKFS EEEQ I++LH++LGNKWSAIAT L GRTDNEIKNFWNTHLKKKL+QMGIDPVTH
Sbjct:    67 RGKFSAEEEQTILHLHSILGNKWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMGIDPVTH 126

Query:   128 RPRTDXXXXXXXXXXXXXXXXXXVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQI 187
             +PRTD                  + NL ++          +Q +A QLA +Q L  +   
Sbjct:   127 QPRTDLFASLPQLIA--------LANLKDLIEQTS-QFSSMQGEAAQLANLQYLQRMFNS 177

Query:   188 ---LSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQ---FH-----XXXXXXXXXVP 236
                L+ +   N   SS+L        N L   +  N  Q   F                P
Sbjct:   178 SASLTNNNGNNFSPSSILDIDQHHAMNLLNSMVSWNKDQNPAFDPVLELEANDQNQDLFP 237

Query:   237 FGFTPQEPNQILSNL---LNFDSASQLPHLGD 265
              GF   +P Q L      LN +S S+LP  GD
Sbjct:   238 LGFIIDQPTQPLQQQKYHLN-NSPSELPSQGD 268

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2171845 MYB53 "myb domain protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 120/188 (63%), Positives = 133/188 (70%)

Query:     7 SDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66
             SDE   +KKGPW PEED KLI+YI KHGH SW ALPKLAGLNRCGKSCRLRWTNYLRPDI
Sbjct:     7 SDE-TGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYLRPDI 65

Query:    67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVT 126
             KRGKFS EEE+ I+NLHAVLGNKWS IA+ LPGRTDNEIKNFWNTHLKKKL+QMG DP+T
Sbjct:    66 KRGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMT 125

Query:   127 HRPRTDXXXXXXXXXXXXXXXXXXVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQ 186
             H+PRTD                  V      P   D   L LQ   T++AK+QL   ++Q
Sbjct:   126 HQPRTDDIFSSLSQLMSLSNLRGLVDLQQQFPME-DQALLNLQ---TEMAKLQLFQYLLQ 181

Query:   187 ILSTSPPP 194
                 SP P
Sbjct:   182 ---PSPAP 186

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:505006490 MYB39 "myb domain protein 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 138/353 (39%), Positives = 186/353 (52%)

Query:     8 DEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK 67
             D+   +KKGPW PEED KL  YI ++G+G+WR+LPKLAGLNRCGKSCRLRW NYLRPDI+
Sbjct:     8 DQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIR 67

Query:    68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTH 127
             RGKFS+ EE  IV LHA+LGNKWS IA  LPGRTDNEIKN+WNTH++KKLLQMGIDPVTH
Sbjct:    68 RGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGIDPVTH 127

Query:   128 RPRTDXXXXXXXXXXXXXXXXXXVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQI 187
              PRT+                   G   N  N    N L   +    + K+QL+H ++QI
Sbjct:   128 EPRTNDLSPILDVSQMLAAAINN-GQFGN--N----NLLNNNTALEDILKLQLIHKMLQI 180

Query:   188 LSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSHQFHXXXXXXXXXVPFGFTPQEPNQI 247
             ++    PNI  SS   + L      +      NS                G TP+  +  
Sbjct:   181 ITPKAIPNI--SSFKTNLLNPKPEPVVNSFNTNSVNPKPDPPAGLFINQSGITPEAASDF 238

Query:   248 LSNLLN-FDSA--SQLPHLGDYXXXXXXXXX-XXXXXXYANNIPTSNQLPA-----LVSV 298
             + +  N +D    +QLP L                     N+   +  +P      L+  
Sbjct:   239 IPSYENVWDGFEDNQLPGLVTVSQESLNTAKPGTSTTTKVNDHIRTGMMPCYYGDQLLET 298

Query:   299 SSADCSALNQQIETKINPNDISNPSSTLTTFEANWGDFMDDEASQSYWRDFIE 351
              S    +++ +  +  +P+   + S +   F  +W  F+DDE S S W+ F++
Sbjct:   299 PSTGSVSVSPETTSLNHPSTAQHSSGS--DFLEDWEKFLDDETSDSCWKSFLD 349

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 99/124 (79%), Positives = 111/124 (89%)

Query:     9 EINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 68
             E N +KKGPWT EEDQKL+DYI+KHG+G+WR LPK AGL RCGKSCRLRWTNYLRPDIKR
Sbjct:     8 EKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKR 67

Query:    69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR 128
             G+FS EEE+ I+ LH+ LGNKWSAIA RLPGRTDNEIKNFWNTH++KKLL+MGIDPVTH 
Sbjct:    68 GRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMGIDPVTHS 127

Query:   129 PRTD 132
             PR D
Sbjct:   128 PRLD 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2132957 MYB41 "myb domain protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
 Identities = 95/122 (77%), Positives = 108/122 (88%)

Query:    11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK 70
             N +KKGPWT EEDQKLIDYIR HG G+WR LPK AGL+RCGKSCRLRWTNYLRPDIKRG+
Sbjct:    10 NGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYLRPDIKRGR 69

Query:    71 FSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPR 130
             FS EEE+ I+ LH+V+GNKWSAIA RLPGRTDNEIKN WNTH++K+L++ GIDPVTH PR
Sbjct:    70 FSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKRLVRSGIDPVTHSPR 129

Query:   131 TD 132
              D
Sbjct:   130 LD 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0016049 "cell growth" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080090 "regulation of primary metabolic process" evidence=IMP

GO:0080091 "regulation of raffinose metabolic process" evidence=IMP

TAIR|locus:2115708 MYB74 "myb domain protein 74" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 96/122 (78%), Positives = 110/122 (90%)

Query:    11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK 70
             N +KKGPWTPEEDQKLIDYI  HG+G+WR LPK AGL RCGKSCRLRWTNYLRPDIKRG+
Sbjct:    11 NGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGR 70

Query:    71 FSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPR 130
             FS EEE+ I+ LH+++GNKWSAIA RLPGRTDNEIKN+WNTH++K+LL+MGIDPVTH PR
Sbjct:    71 FSFEEEETIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLKMGIDPVTHTPR 130

Query:   131 TD 132
              D
Sbjct:   131 LD 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2162585 MYB49 "myb domain protein 49" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 94/124 (75%), Positives = 107/124 (86%)

Query:     7 SDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDI 66
             S E + +KKGPWTPEED+KL+ YI+ HG G WR LPK AGL RCGKSCRLRWTNYLRPDI
Sbjct:     6 SSEESEVKKGPWTPEEDEKLVGYIQTHGPGKWRTLPKNAGLKRCGKSCRLRWTNYLRPDI 65

Query:    67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVT 126
             KRG+FS +EE+ I+ LH +LGNKWSAIA  LPGRTDNEIKN+WNTH+KKKLL+MGIDPVT
Sbjct:    66 KRGEFSLQEEETIIQLHRLLGNKWSAIAIHLPGRTDNEIKNYWNTHIKKKLLRMGIDPVT 125

Query:   127 HRPR 130
             H PR
Sbjct:   126 HCPR 129

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	7e-60
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-57
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	7e-16
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	6e-14
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	7e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-12
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-05
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	8e-05

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  199 bits (506), Expect = 7e-60
 Identities = 95/199 (47%), Positives = 129/199 (64%), Gaps = 5/199 (2%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           ++KG W+PEED+KL+ +I K+GHG W ++PK AGL RCGKSCRLRW NYLRPD+KRG FS
Sbjct: 12  LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD 132
           ++EE LI+ LHAVLGN+WS IA +LPGRTDNEIKN WN+ LKKKL Q GIDP TH+P ++
Sbjct: 72  QQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSE 131

Query: 133 LNNVLANLPQLLAAANFAVGNLMNVPNSWDINALKLQSDATQLAKIQLLHNIIQILSTSP 192
           + N     P     ++ A   + N     ++N LK  +     A  +   + I       
Sbjct: 132 VENGEDKNPPTDDKSDKASSVVSN-----ELNLLKADNSKPLAALQEKRSSSISPAGYQL 186

Query: 193 PPNIEASSLLGSSLGDNYN 211
                +SS + +S  +N++
Sbjct: 187 EVESSSSSKINNSNNNNHS 205

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  186 bits (473), Expect = 2e-57
 Identities = 82/124 (66%), Positives = 101/124 (81%), Gaps = 1/124 (0%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           +K+GPWT EED+ L+ +I+K G G WR+LPK AGL RCGKSCRLRW NYLRP +KRG  +
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTD 132
            +EE LI+ LH +LGN+WS IA R+PGRTDNEIKN+WNTHL+KKLL+ GIDP TH+P  D
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP-LD 141

Query: 133 LNNV 136
            NN+
Sbjct: 142 ANNI 145

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
          +GPWTPEED+ LI+ ++KHG+G+W  + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 70.2 bits (173), Expect = 7e-16
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 68  RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTHL 113
           RG ++ EE++L++      GN  WS IA  LPGRTDN+ KN WN +L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 3   SLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
            LQI       K G W   ED+ L   ++K G  +W  +  L      GK    RW N+L
Sbjct: 8   ELQIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHL 66

Query: 63  RPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWN 110
            P +K+  +SEEE++ +++L   LG +WS IA     RT  +    + 
Sbjct: 67  NPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYV 114

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 18 WTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQ 77
          WT EED+KL+  + K+G   W+ + +   L R   +CR RW   LRP   RG +++EE+Q
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 64.9 bits (159), Expect = 7e-14
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP 64
          KG WT EED+ LI+ ++K+G  +W  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 68  RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKK 115
           +G+++EEE++L++ L    G N W  IA  LPGRT  + +  W   LK 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 17 PWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
          PWT EED+ L++ ++K+G  +W  + K     R  K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 59.5 bits (145), Expect = 5e-12
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 70  KFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHL 113
            ++EEE++L++      G N W  IA  LPGRT  + +  W   L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 71  FSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           ++EEE++ ++ L    GN W  IA  L GRT +  ++ W   L+ K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 17 PWTPEEDQKLIDYIRKHGHGSWR 39
           WT EED+ L++ + K+G G+W 
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWA 24

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
PLN03091	459	hypothetical protein; Provisional	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.95
PLN03212	249	Transcription repressor MYB5; Provisional	99.91
PLN03091	459	hypothetical protein; Provisional	99.89
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.88
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.77
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.57
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.54
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.52
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.38
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.33
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.26
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.2
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.15
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.03
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.01
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.88
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.86
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.7
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.66
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.53
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.53
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.3
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.26
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.01
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.63
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.61
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.52
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.42
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.3
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.01
PRK13923	170	putative spore coat protein regulator protein YlbO	95.88
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.85
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.4
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.27
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.1
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	94.62
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.1
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	93.2
PRK13923	170	putative spore coat protein regulator protein YlbO	93.19
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	91.38
KOG4282	345	consensus Transcription factor GT-2 and related pr	88.03
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	87.91
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	86.46
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	85.24
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	80.08

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=6.3e-36  Score=297.30  Aligned_cols=132  Identities=63%  Similarity=1.153  Sum_probs=127.5

Q ss_pred             CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHH
Q 039198            1 MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIV   80 (351)
Q Consensus         1 m~R~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll   80 (351)
                      |||++||.+ ..++|++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++|+||+|||++|+
T Consensus         1 mgr~~Cc~K-qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLL   79 (459)
T PLN03091          1 MGRHSCCYK-QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII   79 (459)
T ss_pred             CCCCccCcC-CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHH
Confidence            999999999 9999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhH
Q 039198           81 NLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDL  133 (351)
Q Consensus        81 ~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l  133 (351)
                      +++.+||.+|..||+.|+|||+++||+||+.+|++++++.+..+.+++++.+.
T Consensus        80 eL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~  132 (459)
T PLN03091         80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV  132 (459)
T ss_pred             HHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Confidence            99999999999999999999999999999999999999999998888877653

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=1.6e-35  Score=276.76  Aligned_cols=129  Identities=61%  Similarity=1.174  Sum_probs=123.8

Q ss_pred             CCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 039198            2 ESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVN   81 (351)
Q Consensus         2 ~R~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~   81 (351)
                      .|+|||.+ ++++|++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++|+||+|||++|++
T Consensus        13 ~~~pcc~K-~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLle   91 (249)
T PLN03212         13 KTTPCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILR   91 (249)
T ss_pred             CCCCCccc-CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHH
Confidence            36899999 99999999999999999999999998999999999889999999999999999999999999999999999


Q ss_pred             HHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhh
Q 039198           82 LHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRT  131 (351)
Q Consensus        82 lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~  131 (351)
                      ++..||++|..||+.|+|||+++||+||+.++++.+++.+..+++..++.
T Consensus        92 l~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~  141 (249)
T PLN03212         92 LHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLD  141 (249)
T ss_pred             HHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999988887654

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=5e-32  Score=254.53  Aligned_cols=117  Identities=73%  Similarity=1.250  Sum_probs=109.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWS   91 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~   91 (351)
                      .+.||+||+|||++|+++|++||.++|..||+.+|++|++|+||+||.+||+|+++||.||+|||++|++++..+|++|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            34579999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcc
Q 039198           92 AIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR  128 (351)
Q Consensus        92 ~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~  128 (351)
                      .||++|||||++.+|++|+.+|++++.....++....
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~~~  122 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPSTHR  122 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence            9999999999999999999999999988775544443

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.95  E-value=1.7e-29  Score=237.40  Aligned_cols=100  Identities=18%  Similarity=0.254  Sum_probs=95.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCC
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP-GRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANL  140 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~  140 (351)
                      ++.+.||+||+|||++|+++|++|| ++|..||+.++ +||+++||.||.+||+|.++++.||++|++.|+.+|.++||+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            3445689999999999999999999 77999999999 999999999999999999999999999999999999999999


Q ss_pred             chHHhhhccCCCCCCCCCCccch
Q 039198          141 PQLLAAANFAVGNLMNVPNSWDI  163 (351)
Q Consensus       141 w~~Ia~~~~~grt~~~~~n~wn~  163 (351)
                      |+.||+.+| |||||+||||||+
T Consensus        84 Ws~IA~~LP-GRTDNeIKN~Wnt  105 (238)
T KOG0048|consen   84 WSLIAGRLP-GRTDNEVKNHWNT  105 (238)
T ss_pred             HHHHHhhCC-CcCHHHHHHHHHH
Confidence            999999999 9999999999993

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.91  E-value=3.6e-25  Score=207.24  Aligned_cols=99  Identities=21%  Similarity=0.340  Sum_probs=95.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC-CCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCC
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL-PGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANL  140 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l-pgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~  140 (351)
                      ++.++|++||+|||++|+++|++|| .+|..||+.+ ++|+++|||.||.++|+|.+++++||++|++.|++++..+|++
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK   99 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR   99 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence            4689999999999999999999999 6799999998 5999999999999999999999999999999999999999999


Q ss_pred             chHHhhhccCCCCCCCCCCccc
Q 039198          141 PQLLAAANFAVGNLMNVPNSWD  162 (351)
Q Consensus       141 w~~Ia~~~~~grt~~~~~n~wn  162 (351)
                      |+.||..++ |||++.|||+|+
T Consensus       100 Ws~IAk~Lp-GRTDnqIKNRWn  120 (249)
T PLN03212        100 WSLIAGRIP-GRTDNEIKNYWN  120 (249)
T ss_pred             HHHHHhhcC-CCCHHHHHHHHH
Confidence            999999998 999999999999

>PLN03091 hypothetical protein; Provisional

Probab=99.89  E-value=6.8e-24  Score=211.64  Aligned_cols=101  Identities=19%  Similarity=0.282  Sum_probs=96.3

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCC
Q 039198           62 LRPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP-GRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLAN  139 (351)
Q Consensus        62 L~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn  139 (351)
                      .++.++||+||+|||++|+++|++|| .+|..||+.++ +|+++|||.||.++|+|.+++++|+++||+.|+++++.+|+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            34689999999999999999999999 67999999885 99999999999999999999999999999999999999999


Q ss_pred             CchHHhhhccCCCCCCCCCCccch
Q 039198          140 LPQLLAAANFAVGNLMNVPNSWDI  163 (351)
Q Consensus       140 ~w~~Ia~~~~~grt~~~~~n~wn~  163 (351)
                      +|+.||..++ ||+++.|||+|+.
T Consensus        88 KWskIAk~LP-GRTDnqIKNRWns  110 (459)
T PLN03091         88 RWSQIAAQLP-GRTDNEIKNLWNS  110 (459)
T ss_pred             chHHHHHhcC-CCCHHHHHHHHHH
Confidence            9999999998 9999999999993

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.88  E-value=5.6e-23  Score=210.96  Aligned_cols=143  Identities=21%  Similarity=0.308  Sum_probs=134.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccc------------------------------------
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSC------------------------------------   54 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqC------------------------------------   54 (351)
                      |.++|.-|++|||++|+.+...+++.+|..||..+|.+|+..||                                    
T Consensus       249 P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nSh  328 (939)
T KOG0049|consen  249 PKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSH  328 (939)
T ss_pred             CccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCc
Confidence            89999999999999999999999999999999999988999999                                    


Q ss_pred             ------------------ccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc-hhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198           55 ------------------RLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        55 ------------------r~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k-W~~IA~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                                        ..||...|+|++++|+||++||.+|+.+|++||++ |.+|...+|||++.|||.||.+.|..
T Consensus       329 I~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~  408 (939)
T KOG0049|consen  329 IQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNR  408 (939)
T ss_pred             cchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHH
Confidence                              56777889999999999999999999999999965 99999999999999999999999999


Q ss_pred             hhhcCCCCccCcchhhhHHHHhC-CCchHHhhhccCCCCC
Q 039198          116 KLLQMGIDPVTHRPRTDLNNVLA-NLPQLLAAANFAVGNL  154 (351)
Q Consensus       116 ~ik~~~~t~eEd~~l~~l~~~~G-n~w~~Ia~~~~~grt~  154 (351)
                      .++.+.|+-.||..|+.++.+|| ..|..||..++ -++.
T Consensus       409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp-~~t~  447 (939)
T KOG0049|consen  409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLP-KKTS  447 (939)
T ss_pred             hhccCceeecchHHHHHHHHHHccchHHHHHHHcc-ccch
Confidence            99999999999999999999999 57999999998 4553

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.77  E-value=1.7e-19  Score=185.50  Aligned_cols=109  Identities=24%  Similarity=0.434  Sum_probs=101.5

Q ss_pred             CCCCccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHH
Q 039198            1 MESLQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIV   80 (351)
Q Consensus         1 m~R~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll   80 (351)
                      ++|...... |++++|+||++||.+|+.+|.+||..+|.+|-..+ |||+..|||+||.+.|....|+|.||-.||+.|+
T Consensus       347 I~R~~~~Ld-Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v-PnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~  424 (939)
T KOG0049|consen  347 ITRFSHTLD-PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV-PNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLL  424 (939)
T ss_pred             hhhheeccC-ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhc-CCccHHHHHHHHHHHHHHhhccCceeecchHHHH
Confidence            467777777 99999999999999999999999999999999988 8999999999999999999999999999999999


Q ss_pred             HHHHHhC-CchhhhhccCCCCCH---HHHHHHHHH
Q 039198           81 NLHAVLG-NKWSAIATRLPGRTD---NEIKNFWNT  111 (351)
Q Consensus        81 ~lv~~~G-~kW~~IA~~lpgRT~---~qcr~RW~~  111 (351)
                      .+|++|| ++|.+||..||+||+   ..||.|+..
T Consensus       425 ~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~  459 (939)
T KOG0049|consen  425 YAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIA  459 (939)
T ss_pred             HHHHHHccchHHHHHHHccccchhHHHHHHHHHHH
Confidence            9999999 889999999999999   666766654

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.57  E-value=8.4e-16  Score=114.64  Aligned_cols=60  Identities=45%  Similarity=0.949  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHH
Q 039198           18 WTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLI   79 (351)
Q Consensus        18 WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~L   79 (351)
                      ||+|||++|+.+|.+||. +|..||+.|| .|++.+|+.||.++|.+.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999995 9999999994 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.54  E-value=8.2e-15  Score=150.49  Aligned_cols=135  Identities=25%  Similarity=0.420  Sum_probs=119.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKW   90 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW   90 (351)
                      ..++.|.|+..||+.|..+|+++|..+|..||+.+. .|++++|+.||.++++|.++++.|+.|||..|+.+..++|..|
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            457899999999999999999999999999999995 5999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhhh
Q 039198           91 SAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAA  147 (351)
Q Consensus        91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~  147 (351)
                      ..||..+++|++.+|.+||...+..... ..++.......+....-|++.|..+...
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~~~~~~~~~~  150 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFNENSARRPDI  150 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchhhhhhhhhhh
Confidence            9999999999999999999999988776 5566666666666666666666665543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.52  E-value=7e-15  Score=109.64  Aligned_cols=60  Identities=28%  Similarity=0.527  Sum_probs=54.0

Q ss_pred             CCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchh
Q 039198           71 FSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPR  130 (351)
Q Consensus        71 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l  130 (351)
                      ||+|||++|+.+|..||.+|..||+.|+.||..+|+.||..+|++.+.+++|+++|+..|
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999999999999999669999999999999999999999999998653

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=4.7e-14  Score=142.95  Aligned_cols=107  Identities=28%  Similarity=0.570  Sum_probs=100.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWS   91 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~   91 (351)
                      -++.|-|+.-||+.|..+|.+||...|.+|++.+ ...+++||+.||..+++|.+++..|+.|||++|+.+...+...|.
T Consensus         4 ~~kggvwrntEdeilkaav~kyg~nqws~i~sll-~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    4 EIKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLL-NRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EEecceecccHHHHHHHHHHHcchHHHHHHHHHH-hhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            3678999999999999999999999999999999 589999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHhhhhhhhcC
Q 039198           92 AIATRLPGRTDNEIKNFWNTHLKKKLLQM  120 (351)
Q Consensus        92 ~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~  120 (351)
                      .||..| ||++.||-.||++.|...+...
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~  110 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSYH  110 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhhh
Confidence            999998 9999999999999998766543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.38  E-value=4.9e-13  Score=95.97  Aligned_cols=46  Identities=33%  Similarity=0.690  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc-hhhhhccCC-CCCHHHHHHHHHHhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLP-GRTDNEIKNFWNTHL  113 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~k-W~~IA~~lp-gRT~~qcr~RW~~~L  113 (351)
                      |++||+|||++|+++|.+||.+ |..||..|| +||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            6899999999999999999977 999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.33  E-value=9.1e-13  Score=136.93  Aligned_cols=136  Identities=24%  Similarity=0.370  Sum_probs=106.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC--CCCCCCCHHHHHHHHHHHH-------
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD--IKRGKFSEEEEQLIVNLHA-------   84 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~--lkrg~WT~EED~~Ll~lv~-------   84 (351)
                      .+|.||+||++.|..+|..+|. +|.+|+..+|  |.+..|++||.++...+  .++|.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999995 9999999997  99999999999999888  4899999999999999995       


Q ss_pred             Hh-------C------------CchhhhhccCCCCCHHHHHHHHHHhhhhhh-hcCCCCcc-CcchhhhHHHHh------
Q 039198           85 VL-------G------------NKWSAIATRLPGRTDNEIKNFWNTHLKKKL-LQMGIDPV-THRPRTDLNNVL------  137 (351)
Q Consensus        85 ~~-------G------------~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~i-k~~~~t~e-Ed~~l~~l~~~~------  137 (351)
                      ++       |            =.|..|++.++.|+..|||-+|+.++.... ..+.+... ...-+++-...+      
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~  539 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES  539 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence            23       1            149999999999999999999998776544 44555542 112222222222      


Q ss_pred             CCCchHHhhhccCCCC
Q 039198          138 ANLPQLLAAANFAVGN  153 (351)
Q Consensus       138 Gn~w~~Ia~~~~~grt  153 (351)
                      .--|.-|+...+ |..
T Consensus       540 ~IDW~~l~~~~~-g~~  554 (607)
T KOG0051|consen  540 PIDWKSLAEYAP-GES  554 (607)
T ss_pred             ccCHHHHHHhCC-CCC
Confidence            234777777666 443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.26  E-value=7.6e-13  Score=94.97  Aligned_cols=48  Identities=42%  Similarity=0.870  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L   62 (351)
                      |++||+|||++|+++|.+||.++|..||..++.+||+.||+.||.+++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998779999999955999999999998864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.20  E-value=1.1e-11  Score=129.09  Aligned_cols=121  Identities=26%  Similarity=0.313  Sum_probs=102.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh----CCC-------------------CcccccccccccccccccccccccccCCCC-CC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKH----GHG-------------------SWRALPKLAGLNRCGKSCRLRWTNYLRPDI-KR   68 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~----g~~-------------------nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~l-kr   68 (351)
                      ++-+.|+.|||+.|-..|..|    |-.                   -|..|...+ |.|+.+.++.+-++...|-- ++
T Consensus       306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~L-p~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLL-PYRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhc-CcccchhHHHHHHhcCCcccccc
Confidence            455899999999999998777    211                   256677777 67999999884444444433 99


Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhh--hhcCCCCccCcchhhhHHH
Q 039198           69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKK--LLQMGIDPVTHRPRTDLNN  135 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~--ik~~~~t~eEd~~l~~l~~  135 (351)
                      |.||+||++.|..+|.++|+.|..|+..| ||.+..|++||+.+.+..  ..++.|+-+|.+.|+++|+
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999 999999999999999987  5889999999999999885

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.15  E-value=6.9e-11  Score=82.29  Aligned_cols=47  Identities=43%  Similarity=0.882  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      +++||++||.+|+.++..|| .+|..||..+++||..+|+.||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.03  E-value=4.1e-11  Score=123.44  Aligned_cols=97  Identities=23%  Similarity=0.297  Sum_probs=91.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchH
Q 039198           65 DIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQL  143 (351)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~  143 (351)
                      ..+.|.|+..||+.|..+|+.|| ++|+.||..+.-|++++|+.||++++.|.+++..|+.+|+..++++...+|++|+.
T Consensus        17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wst   96 (512)
T COG5147          17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST   96 (512)
T ss_pred             eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhh
Confidence            45678999999999999999999 66999999998899999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCCCCCccc
Q 039198          144 LAAANFAVGNLMNVPNSWD  162 (351)
Q Consensus       144 Ia~~~~~grt~~~~~n~wn  162 (351)
                      ||...+ ||+...+.++|.
T Consensus        97 ia~~~d-~rt~~~~~ery~  114 (512)
T COG5147          97 IADYKD-RRTAQQCVERYV  114 (512)
T ss_pred             hccccC-ccchHHHHHHHH
Confidence            999998 899888777776

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.01  E-value=5.9e-10  Score=76.48  Aligned_cols=44  Identities=36%  Similarity=0.755  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhh
Q 039198           70 KFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHL  113 (351)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~L  113 (351)
                      +||+|||..|+.++..|| .+|..||..+++|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.88  E-value=6.8e-10  Score=113.16  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=81.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHH
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLL  144 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~I  144 (351)
                      ++.|.|+.-||+.|-..|++|| +.|+.|++.+.-.+..||+.||..+|.|.|++..|+.+||..++.+...+...|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            5678999999999999999999 569999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCC
Q 039198          145 AAANFAVGNLM  155 (351)
Q Consensus       145 a~~~~~grt~~  155 (351)
                      +..+.  |+.+
T Consensus        85 a~i~g--r~~~   93 (617)
T KOG0050|consen   85 ADIMG--RTSQ   93 (617)
T ss_pred             HHHhh--hhHH
Confidence            87654  5543

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.86  E-value=8.8e-10  Score=76.63  Aligned_cols=48  Identities=42%  Similarity=0.882  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      +++||++||++|+.++..||..+|..||..+ ++|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~-~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKEL-PGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCHHHHHHHHHHHcC
Confidence            5789999999999999999966999999999 59999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.70  E-value=5.1e-09  Score=71.77  Aligned_cols=44  Identities=41%  Similarity=0.866  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198           17 PWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   61 (351)
Q Consensus        17 ~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~   61 (351)
                      +||+|||+.|+.++.+||..+|..||+.+ ++|++.+|+.||.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~-~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL-PGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHc-CCCCHHHHHHHHHHh
Confidence            59999999999999999977999999999 589999999999765

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.66  E-value=2e-05  Score=59.12  Aligned_cols=49  Identities=14%  Similarity=0.371  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSW---RALPKLAGLNR-CGKSCRLRWTNYL   62 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW---~~IA~~lgp~R-s~kqCr~Rw~n~L   62 (351)
                      ++-.||+||..+++++|+.+|.++|   ..|++.++..| |..||+.+++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4668999999999999999998899   99999887666 9999999887763

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.53  E-value=0.00012  Score=74.19  Aligned_cols=50  Identities=24%  Similarity=0.465  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           65 DIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      .+-...||.+|+..|+++++.|| |+|..||.+++.|+..+|+.+|.++.-
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence            34557899999999999999999 999999999999999999999986543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.53  E-value=0.0002  Score=53.73  Aligned_cols=48  Identities=15%  Similarity=0.230  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-Cch---hhhhccCC-CC-CHHHHHHHHHHhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLG-NKW---SAIATRLP-GR-TDNEIKNFWNTHLK  114 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G-~kW---~~IA~~lp-gR-T~~qcr~RW~~~Lr  114 (351)
                      +|-.||+||..+++++++.+| ++|   ..|++.|. .| |..||+.+.+.|..
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            355799999999999999999 499   99999885 45 99999999887653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.30  E-value=0.00023  Score=63.73  Aligned_cols=51  Identities=20%  Similarity=0.371  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CCc----hhhhhccCCCCCHHHHHHHHHHhhhhhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVL---GNK----WSAIATRLPGRTDNEIKNFWNTHLKKKLL  118 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~---G~k----W~~IA~~lpgRT~~qcr~RW~~~Lr~~ik  118 (351)
                      +...||.|||.+|...|-+|   |+.    +..++..| +||...|.-||+.++|+...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence            45689999999999999988   543    89999999 99999999999999998653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.26  E-value=9e-05  Score=75.12  Aligned_cols=125  Identities=15%  Similarity=0.308  Sum_probs=81.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC-CCCCCCC-------CHHHHHHHHHH-H
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP-DIKRGKF-------SEEEEQLIVNL-H   83 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p-~lkrg~W-------T~EED~~Ll~l-v   83 (351)
                      +-...||.+|+-+|+++++.||.|||..||..+| .|+..+|+++|.+++-. .+-.-+|       ...||....+- +
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k~~~  148 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAKNRA  148 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhccccc
Confidence            5567899999999999999999999999999999 99999999999986532 2222222       34455555444 3


Q ss_pred             HHhCC-------------chhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCc----cCcchhhhHHHHhCCC
Q 039198           84 AVLGN-------------KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDP----VTHRPRTDLNNVLANL  140 (351)
Q Consensus        84 ~~~G~-------------kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~----eEd~~l~~l~~~~Gn~  140 (351)
                      ..++.             .=..|+..||+|.+...  -|.+.-...+..+.+.+    ++.+..+..+..|-.+
T Consensus       149 ~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~dFd~--Eydn~AE~li~dm~f~e~D~~~d~elKla~ldiY~sr  220 (438)
T KOG0457|consen  149 EPFQPTDLVPRKPGVSNPLRREISGYMPGRLDFDE--EYDNEAEQLIRDMEFEEDDTEEDHELKLAVLDIYNSR  220 (438)
T ss_pred             ccCCCCCCCCCCCCCCCchHHHHhhhCccchhhhh--hhcchhhhhHhhcccCCCCcHHHHHHHHHHHHHHHHH
Confidence            33332             13578889999985432  23333444444555433    2333334455556433

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.01  E-value=0.00091  Score=51.54  Aligned_cols=50  Identities=24%  Similarity=0.482  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHHHHHHHh---C-----Cc-hhhhhccCC-CCCHHHHHHHHHHhhhhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVL---G-----NK-WSAIATRLP-GRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~---G-----~k-W~~IA~~lp-gRT~~qcr~RW~~~Lr~~i  117 (351)
                      |-+||.|||+.|+++|..+   |     ++ |..+++..+ .+|-.+-|+||...|++..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            4579999999999999654   2     22 999999888 9999999999999888754

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.63  E-value=0.0023  Score=66.82  Aligned_cols=46  Identities=15%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTH  112 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~  112 (351)
                      -++.||.+|..+|++.|+.||.+|.+||.++++||..||-.++...
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4578999999999999999999999999999999999999998654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.61  E-value=0.002  Score=66.07  Aligned_cols=44  Identities=16%  Similarity=0.321  Sum_probs=41.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT  111 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~  111 (351)
                      ...||.+|..+|++.|+.||..|.+||.+++.|+..||-.||..
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            45899999999999999999999999999999999999999964

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.52  E-value=0.0021  Score=50.88  Aligned_cols=49  Identities=31%  Similarity=0.573  Sum_probs=34.6

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------chhhhhccC---C-CCCHHHHHHHHHHhhhhh
Q 039198           68 RGKFSEEEEQLIVNLHAV------LG--N------KWSAIATRL---P-GRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~------~G--~------kW~~IA~~l---p-gRT~~qcr~RW~~~Lr~~  116 (351)
                      |-.||.+|...|+.++..      ++  +      -|..||..|   + .|++.||+.||.++.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            347999999999999877      21  1      299999887   2 799999999999855544

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.42  E-value=0.0048  Score=57.36  Aligned_cols=101  Identities=23%  Similarity=0.386  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccc--ccccccccccccccccc-CCC--------------------CCCCCCCH
Q 039198           17 PWTPEEDQKLIDYIRKHGHGSWRALPKLA--GLNRCGKSCRLRWTNYL-RPD--------------------IKRGKFSE   73 (351)
Q Consensus        17 ~WT~EED~~L~~~V~k~g~~nW~~IA~~l--gp~Rs~kqCr~Rw~n~L-~p~--------------------lkrg~WT~   73 (351)
                      +|++++|-.|+.+|+.-.  +-+.|+..+  .-.-|-..+.+||...| +|.                    ..+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998753  566665432  22345566688998764 332                    24568999


Q ss_pred             HHHHHHHHHHHHhCC---chhhhhc-----cCCCCCHHHHHHHHHHhhhhhhhc
Q 039198           74 EEEQLIVNLHAVLGN---KWSAIAT-----RLPGRTDNEIKNFWNTHLKKKLLQ  119 (351)
Q Consensus        74 EED~~Ll~lv~~~G~---kW~~IA~-----~lpgRT~~qcr~RW~~~Lr~~ik~  119 (351)
                      +|++.|.........   .+.+|=.     ..++||+++...+|....+..+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~  132 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP  132 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence            999999998766643   3655532     236899999999999766655543

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.30  E-value=0.0014  Score=67.27  Aligned_cols=46  Identities=20%  Similarity=0.510  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   61 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~   61 (351)
                      ....||.+|-.+|+++|+.||. +|.+||.++| .|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            6679999999999999999996 9999999998 99999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.01  E-value=0.0028  Score=66.20  Aligned_cols=49  Identities=20%  Similarity=0.520  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   61 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~   61 (351)
                      ...-++.||.+|+.+|+++|++||. +|.+||..+| .|+..||..++.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3456889999999999999999996 9999999998 99999999998763

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.88  E-value=0.0082  Score=54.50  Aligned_cols=51  Identities=16%  Similarity=0.327  Sum_probs=42.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc-------hhhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLGNK-------WSAIATRLPGRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~k-------W~~IA~~lpgRT~~qcr~RW~~~Lr~~i  117 (351)
                      .+...||.|||.+|.+.|-.|+..       ...++..| +||..+|..||+.++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            356789999999999999888621       66667777 9999999999999999754

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.85  E-value=0.0021  Score=57.73  Aligned_cols=51  Identities=27%  Similarity=0.665  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-C-----CcccccccccccccccccccccccccCCC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGH-G-----SWRALPKLAGLNRCGKSCRLRWTNYLRPD   65 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~-~-----nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~   65 (351)
                      .+...||.|||.+|-+.|.+|-. |     .+.+++..++  ||+.-|.-||..+++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRkq   58 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRKQ   58 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHHH
Confidence            46778999999999999999932 1     4888998886  99999999999988743

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.40  E-value=0.0031  Score=49.84  Aligned_cols=47  Identities=30%  Similarity=0.721  Sum_probs=31.7

Q ss_pred             CCCCCHHHHHHHHHHHHHh------C---C----CCcccccccc---cccccccccccccccc
Q 039198           15 KGPWTPEEDQKLIDYIRKH------G---H----GSWRALPKLA---GLNRCGKSCRLRWTNY   61 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~------g---~----~nW~~IA~~l---gp~Rs~kqCr~Rw~n~   61 (351)
                      +..||.+|...|++++...      +   .    .-|..||..|   |..|++.||+.+|.++
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            4589999999999998771      1   0    1399999654   6789999999999874

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.27  E-value=0.028  Score=43.62  Aligned_cols=48  Identities=31%  Similarity=0.544  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----C--C----------chhhhhccC-----CCCCHHHHHHHHHHhhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVL-----G--N----------KWSAIATRL-----PGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~-----G--~----------kW~~IA~~l-----pgRT~~qcr~RW~~~Lr~  115 (351)
                      +..||.+|...|+++|.+|     |  .          -|..|+..|     +.|+..+++.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999887     3  1          299999877     379999999999986553

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.10  E-value=0.019  Score=56.81  Aligned_cols=47  Identities=26%  Similarity=0.488  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      -..|+.+|+..|+++...+| |+|..||.+++.|+...||.+|..+..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34699999999999999999 999999999999999999999876554

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=94.62  E-value=0.008  Score=46.32  Aligned_cols=52  Identities=29%  Similarity=0.534  Sum_probs=32.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--CcccccccccccccccccccccccccCCCC
Q 039198           15 KGPWTPEEDQKLIDYIRKHGH------G--SWRALPKLAGLNRCGKSCRLRWTNYLRPDI   66 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~------~--nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~l   66 (351)
                      +-+||.|||+.|+++|..+..      |  =|.++++.--+.+|..+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            458999999999999976632      2  288888766238999999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.10  E-value=0.013  Score=57.86  Aligned_cols=108  Identities=16%  Similarity=0.347  Sum_probs=74.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC-------CCC-CCCCCHHHHHHHHHH---HH
Q 039198           16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP-------DIK-RGKFSEEEEQLIVNL---HA   84 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p-------~lk-rg~WT~EED~~Ll~l---v~   84 (351)
                      --|+.+|+.+|+++++..|.|+|..||..+| .|+...|+.+|..++..       ++. .++-.  .|+-|.+-   ++
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~es~~ypl~~i~~~~~v~--q~~f~~qrr~rie  140 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYDESKYYPLPDITQNIHVP--QDEFLEQRRHRIE  140 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHhhcccccccccccCCCCc--hHHHHHHHHhhhh
Confidence            4699999999999999999999999999998 99999999999987652       221 22222  22222222   22


Q ss_pred             HhC-------------CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcc
Q 039198           85 VLG-------------NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR  128 (351)
Q Consensus        85 ~~G-------------~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~  128 (351)
                      .+-             ..=..|...||||-...+  -|.+--.--++.+.|++..+.
T Consensus       141 ~f~~ppi~prkP~aS~P~cheiqgyMPgRleFd~--EymnEaE~pikDm~fd~d~~e  195 (432)
T COG5114         141 TFELPPINPRKPKASNPYCHEIQGYMPGRLEFDV--EYMNEAEVPIKDMSFDGDKEE  195 (432)
T ss_pred             hccCCCCCCCCCCCCCCchhhhhccCCCccccch--hhhhcccccccccccCCchHH
Confidence            221             114678889999987644  345555556777778765544

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=93.20  E-value=0.024  Score=44.08  Aligned_cols=49  Identities=22%  Similarity=0.469  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------------CCcccccccc----ccccccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGH----------------GSWRALPKLA----GLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~----------------~nW~~IA~~l----gp~Rs~kqCr~Rw~n~L   62 (351)
                      ++..||.+|.+.|+++|.+|..                .-|..|+..+    +..|+..+|+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998832                1499998644    23799999999998753

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.19  E-value=0.018  Score=52.36  Aligned_cols=50  Identities=22%  Similarity=0.541  Sum_probs=40.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC------CcccccccccccccccccccccccccCC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHG------SWRALPKLAGLNRCGKSCRLRWTNYLRP   64 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~------nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p   64 (351)
                      .+...||.|||.+|-+.|.+|+..      ....++..++  |++..|..||..+++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vrk   58 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVRK   58 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHHH
Confidence            567899999999999999999643      2555666665  9999999999777663

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=91.38  E-value=0.26  Score=55.98  Aligned_cols=100  Identities=15%  Similarity=0.332  Sum_probs=73.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 039198           16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY---------------------------   61 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~-------Rw~n~---------------------------   61 (351)
                      ..|+.-+=..++.++.+||..+-..||..++ +++...++.       ||...                           
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588888888888999999888889998884 566666531       11110                           


Q ss_pred             ---------------cC-CCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhcc------------CCCCCHHHHHHHHHHh
Q 039198           62 ---------------LR-PDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATR------------LPGRTDNEIKNFWNTH  112 (351)
Q Consensus        62 ---------------L~-p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~------------lpgRT~~qcr~RW~~~  112 (351)
                                     +. +.-++..+|.|||..|+-.+.+|| ++|..|-..            +..||...+..|...+
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                           00 222344599999999999999999 789998432            2579999999999887


Q ss_pred             hhhh
Q 039198          113 LKKK  116 (351)
Q Consensus       113 Lr~~  116 (351)
                      ++-.
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            7654

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=88.03  E-value=0.76  Score=45.53  Aligned_cols=49  Identities=22%  Similarity=0.390  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCchhhhhccC----CCCCHHHHHHHHHHhhhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVL----------GNKWSAIATRL----PGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~----------G~kW~~IA~~l----pgRT~~qcr~RW~~~Lr~~  116 (351)
                      ...|+.+|-..||.+....          +..|..||..+    --|++.+||.+|.++.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            3689999999999998643          23499999865    2699999999999876654

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=87.91  E-value=1.1  Score=35.69  Aligned_cols=45  Identities=27%  Similarity=0.527  Sum_probs=33.8

Q ss_pred             CCCHHHHHHHHHHHHHh---C-----C-----chhhhhccC---C--CCCHHHHHHHHHHhhh
Q 039198           70 KFSEEEEQLIVNLHAVL---G-----N-----KWSAIATRL---P--GRTDNEIKNFWNTHLK  114 (351)
Q Consensus        70 ~WT~EED~~Ll~lv~~~---G-----~-----kW~~IA~~l---p--gRT~~qcr~RW~~~Lr  114 (351)
                      .||+++++.|++++.+.   |     +     .|..|+..|   +  ..+..||++||..+-+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            59999999999998543   2     1     189998877   2  3578999999875443

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=86.46  E-value=0.98  Score=45.93  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198           69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                      .+||.+|-++..++...+|..+..||..+|.|..+|++.+|.+--+.
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            36999999999999999999999999999999999999999764443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=85.24  E-value=1.3  Score=37.94  Aligned_cols=51  Identities=27%  Similarity=0.476  Sum_probs=39.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----chhhhhccC------------CCCCHHHHHHHHHHhhhh
Q 039198           65 DIKRGKFSEEEEQLIVNLHAVLGN----KWSAIATRL------------PGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~----kW~~IA~~l------------pgRT~~qcr~RW~~~Lr~  115 (351)
                      .-++..||.|||.-|+-.+.+||-    .|..|-..+            ..||...+..|...+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            455678999999999999999995    598886432            469999999999877764

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=80.08  E-value=1.4  Score=37.90  Aligned_cols=35  Identities=31%  Similarity=0.481  Sum_probs=29.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLA   45 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~l   45 (351)
                      +.-++..||.|||.-|+-++.+||.   +.|..|...+
T Consensus        45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            3677899999999999999999999   8999997655

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-26
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-24
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-24
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-24
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-24
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		7e-17
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		4e-13
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-10
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		2e-09
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		2e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		5e-08
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		5e-08
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		9e-08

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 78/109 (71%), Gaps = 3/109 (2%)
Query: 10  INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKR 68
           I ++ KGPWT EEDQK+I+ ++K+G   W  + K L G  R GK CR RW N+L P++K+
Sbjct: 2   IPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKK 59
Query: 69  GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
             ++EEE+++I   H VLGN+W+ IA  LPGRTDN +KN WN+ +K+K+
Sbjct: 60  SSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 75/104 (72%), Gaps = 3/104 (2%)
Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
           KGPWT EEDQ++I++++K+G   W  + K L G  R GK CR RW N+L P++K+  ++E
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 74  EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           EE+++I   H  LGN+W+ IA  LPGRTDN +KN WN+ +++K+
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
           KGPWT EEDQ++I  ++K+G   W  + K L G  R GK CR RW N+L P++K+  ++E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74  EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           EE+++I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
           KGPWT EEDQ++I  ++K+G   W  + K L G  R GK CR RW N+L P++K+  ++E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 74  EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           EE+++I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
           KGPWT EEDQ++I  ++K+G   W  + K L G  R GK CR RW N+L P++K+  ++E
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 74  EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           EE+++I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKRGKFS 72
           KGP+T  ED  + +Y++++G  +W   P++     NR  K CR RW N+L P + +  ++
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
            EE++ I   +  LG+KWS IA  +PGRTDN IKN WN+ + K++
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 14  KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
           KK  +TPEED+ L   + +HG   W+ +      NR  + CR RW NYL P I    ++ 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 74  EEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT 111
           EE+ L+V      G +W+ IA   PGRTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEE 74
           K  +T EED KL   + ++G   W  + +L  + R  + CR RW NY+ P ++   +S E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 75  EEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFW 109
           E+ L+   +A  G KW+ I+  L  R+DN I+N W
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 66  IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           +K+  ++EEE+++I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 40/53 (75%)
Query: 65  DIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           ++K+  ++EEE++++   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 65
          KGPWT EEDQ+LI  ++K+G   W  + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 65
          KGPWT EEDQ++I+ ++K+G   W  + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTNYLRPD 65
          KGPWT EEDQ++I  ++K+G   W  + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	4e-75
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	3e-73
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-71
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-63
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-61
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-38
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	6e-58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	3e-31
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-27
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-24
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	7e-18
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-13
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	5e-06
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-12
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	4e-10
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	9e-05
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	6e-10
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	7e-10
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-09
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	4e-09
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-08
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	5e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	1e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	9e-07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	9e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	3e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  227 bits (580), Expect = 4e-75
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 1/130 (0%)

Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEE 74
           KGP+T  ED  + +Y++++G  +W  +      NR  K CR RW N+L P + +  ++ E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 75  EEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLN 134
           E++ I   +  LG+KWS IA  +PGRTDN IKN WN+ + K++           P     
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 135 NVLANLPQLL 144
              A++P+ L
Sbjct: 121 RKAADVPKKL 130

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  221 bits (565), Expect = 3e-73
 Identities = 49/105 (46%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 13  IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFS 72
           + KGPWT EEDQ++I  ++K+G   W  + K     R GK CR RW N+L P++K+  ++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 60

Query: 73  EEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           EEE+++I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  217 bits (555), Expect = 2e-71
 Identities = 48/106 (45%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 12  NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 71
            + KGPWT EEDQ++I++++K+G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 82

Query: 72  SEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           +EEE+++I   H  LGN+W+ IA  LPGRTDN +KN WN+ +++K+
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  197 bits (502), Expect = 2e-63
 Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 2/120 (1%)

Query: 11  NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK 70
              KK  +TPEED+ L   + +HG   W+ +      NR  + CR RW NYL P I    
Sbjct: 7   KAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTP 64

Query: 71  FSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPR 130
           ++ EE+ L+V      G +W+ IA   PGRTD  IKN W T   K  +      + H   
Sbjct: 65  WTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHHHH 124

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  192 bits (490), Expect = 3e-61
 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 12  NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 71
            + KGPWT EEDQ++I  ++K+G   W  + K     R GK CR RW N+L P++K+  +
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 72  SEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           +EEE+++I   H  LGN+W+ IA  LPGRTDN IKN WN+ +++K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  133 bits (336), Expect = 3e-38
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 12  NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF 71
           ++ K  WT EED+KL   + ++G   W+ +      NR    C+ RW   L P++ +G +
Sbjct: 3   HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPW 61

Query: 72  SEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTHL 113
           ++EE+Q ++ L    G K WS IA  L GR   + +  W+ HL
Sbjct: 62  TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  181 bits (463), Expect = 6e-58
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 1/105 (0%)

Query: 15  KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEE 74
           K  +T EED KL   + ++G   W  + +L    R  + CR RW NY+ P ++   +S E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 75  EEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQ 119
           E+ L+   +A  G KW+ I+  L  R+DN I+N W    + +   
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  111 bits (280), Expect = 3e-31
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
          + KGPWT EEDQ+LI  ++K+G   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  102 bits (257), Expect = 1e-27
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGK 70
          ++ K G W   ED+ L   + K+G   W  +  L    +  K C+ RW  +L P IK+ +
Sbjct: 5  SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTE 63

Query: 71 FSEEEE 76
          +S    
Sbjct: 64 WSGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 93.8 bits (234), Expect = 1e-24
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
          + K  WT EED+KL   + ++G   W+ +      NR    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 75.7 bits (187), Expect = 7e-18
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSW----RALPKLAGLNRCGKSCRLRWTNYLRPDI 66
           +  K  WT EED++L   +R+ G   W       P     NR  + C+ RW   L    
Sbjct: 4  GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-----NRTDQQCQYRWLRVLSGPS 58

Query: 67 K 67
           
Sbjct: 59 S 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 63  RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKK 116
                + K++ EE++ +  L    G   W  +A+  P RTD + +  W   L   
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRA-LPKLAGLNRCGKSCRLRWTNYLR 63
          K+  W  EED+ L   +RK+G G+W   L      NR     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLP--GRTDNEIKNFWNTHLKKK 116
           KR  +  EE++ + +     G   WS I        RT   +K+ W T  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 61.0 bits (148), Expect = 1e-12
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 68
          ++ KK  W+ EE++KL+   +      WR +  + G  R    C   +   L    +R
Sbjct: 5  SSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 66  IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
            K+ ++S EEE+ +++L  ++  +W  IA  + GRT  +    +   L K  
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAA 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 2e-11
 Identities = 65/376 (17%), Positives = 115/376 (30%), Gaps = 114/376 (30%)

Query: 11  NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLR-WTNYLRPDIKRG 69
           + IK     P    ++    R   +   +   K   ++R     +LR     LRP     
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRP----- 149

Query: 70  KFSEEEEQLIVNLHAVLGN-KWS-AIAT----RLPGRTDNEIKNFW----NTHLKKKLLQ 119
                  + ++ +  VLG+ K   A+      ++  + D +I  FW    N +  + +L+
Sbjct: 150 ------AKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLE 200

Query: 120 M------GIDPVTH-------RPRTDLNNVLANLPQLLAAANFA----VGNLMNVPNSWD 162
           M       IDP            +  ++++ A L +LL +  +     V  L+NV N+  
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKA 258

Query: 163 INALKLQSDATQLAKIQLLHNIIQILSTSPPPNIEASSLLGSSLGDNYNQLFEFLRMNSH 222
            NA  L                 +IL T+    +    L  ++           + ++ H
Sbjct: 259 WNAFNLSC---------------KILLTTRFKQV-TDFLSAATTTH--------ISLDHH 294

Query: 223 QFHGNNGNGNGNVPFGFTPQEPNQILSNLLNFDSASQLPH----------------LGDY 266
                            TP E   +L   L+      LP                 + D 
Sbjct: 295 S-------------MTLTPDEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 267 TNTSTSNTSQLGSSSYANNIPTS-NQL-PALVSVSSADCSALNQQIETKINPNDISNPSS 324
             T   N   +        I +S N L PA         S         + P     P+ 
Sbjct: 341 LATWD-NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---------VFPPSAHIPTI 390

Query: 325 TLTTFEANWGDFMDDE 340
            L+     W D +  +
Sbjct: 391 LLSLI---WFDVIKSD 403

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRA-LPKLAGLNRCGKSCRLRWTNYLRPDI 66
          K+  W  EED+ L   +RK+G G+W   L      NR     + RW    +  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLP--GRTDNEIKNFWNTHLKKKLLQ 119
           KR  +  EE++ + +     G   WS I        RT   +K+ W T  K KL+ 
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 53.5 bits (129), Expect = 6e-10
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDI 66
          KK  WT EE + +   ++K+G G+W A+ K     NR     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLP--GRTDNEIKNFWNTHLKKKL 117
           K+ K++ EE + +       G   W+AI+   P   RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 54.7 bits (131), Expect = 7e-10
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 14  KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PD 65
            + P++  E + L+  + K G G WR +   A     +R     + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 66  IKRGKFSEEEEQL-IVNLHAVLGNKWSAIATR 96
            +RG+   +E    ++N H     +      +
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 14  KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYLR-----PD 65
            + P+T  E + L++ +   G G WR +   A     +R     + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 66  IKRGKFSEEEEQL-IVNLHAVLGNKWSA 92
            +RG    +E    ++   A      S 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDI 66
          KK  WT EE + +   ++K+G G+W A+ K     NR     + RW    R  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLP--GRTDNEIKNFWNTHLKKKL 117
           K+ K++ EE + +       G   W+AI+   P   RT   IK+ W T  +  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 9/87 (10%)

Query: 14  KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PD 65
            + P++  E + L++ +   G G WR +   A     +R     + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 66  IKRGKFSEEEEQLIV-NLHAVLGNKWS 91
            +RG+   ++    V   HA    +  
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 51.5 bits (123), Expect = 5e-09
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 17 PWTPEEDQKLIDYIRKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYLR-----PDIKR 68
          P++  E + L++ +   G G WR +   A     +R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 69 GKFSEEEEQL-IVNLHAVLGNK 89
          G+   ++    ++  HA    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
           +     WT +E+  L++ +   G G+W+ +       +  + C   +  Y 
Sbjct: 4  GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 14  KKGPWTPEEDQKLIDYIRKH-----GHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR 68
            K  +T EED+ ++D +RK+      H  +  +      N  G S R R+  YL   ++ 
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 69  GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDN 103
               ++  +L+ +     GN        LP     
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIK--TKVLPPSIKR 95

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 55  RLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK 114
                +  R ++    ++EEE           G  WSAIA  +  +T ++ KNF+  + K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 115 K 115
           +
Sbjct: 63  R 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 69
            G +TPEE +KL +   KHG   W  +     L R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAA--LGRSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT 111
             GK++ EE + +  L    GN W+ I   L GR+ + +K+    
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL 65

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 44.7 bits (106), Expect = 9e-07
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61
               W  +E+  LID     G G+W  +    G  R  + CR  +   
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 63  RPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGI 122
                  K++ EE++L     A  G +W+ I+  +  RT  ++K++   +  K  ++ G+
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYF-KNKVKCGL 62

Query: 123 DPVTHRPRT 131
           D  T   +T
Sbjct: 63  DKETPNQKT 71

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSE 73
              WT EE +     + K G   W  + KL G +R     +     Y +  +K G   E
Sbjct: 8  YSVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKE 65

Query: 74 EEEQ 77
             Q
Sbjct: 66 TPNQ 69

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61
                 WT +E   L++ +  +    W  + +  G +R    C L +   
Sbjct: 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.91
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.91
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.9
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.89
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.8
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.78
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.67
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.66
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.66
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.65
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.63
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.63
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.63
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.62
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.6
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.58
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.57
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.56
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.56
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.55
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.54
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.52
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.51
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.48
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.45
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.44
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.14
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.42
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.41
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.4
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.35
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.32
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.31
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.3
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.3
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.27
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.27
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.17
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.75
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.08
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.06
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.06
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.84
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.71
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.7
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.62
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.61
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.55
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.49
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.45
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.39
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.3
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.23
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.18
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.02
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.86
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.79
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.74
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.64
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.58
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.45
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.54
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.3
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.3
2crg_A	70	Metastasis associated protein MTA3; transcription	97.15
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.01
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.88
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	96.75
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.73
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.45
2crg_A	70	Metastasis associated protein MTA3; transcription	96.35
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.29
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.27
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	95.84
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	94.82
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	95.63
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.36
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.3
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	93.47
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	92.44
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.98
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	87.18

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=4.8e-41  Score=295.64  Aligned_cols=150  Identities=26%  Similarity=0.510  Sum_probs=107.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-ch
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGN-KW   90 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kW   90 (351)
                      ++++++||+|||++|+++|++||.++|..||+.+ ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            5789999999999999999999988999999999 599999999999999999999999999999999999999995 69


Q ss_pred             hhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhhhccCCCCCCCCCCccch
Q 039198           91 SAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWDI  163 (351)
Q Consensus        91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~~~~grt~~~~~n~wn~  163 (351)
                      ..||..|||||++||++||.++|.|.+++++||++||..|++++..+|++|..||..++ ||+++.|+|+|+.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~-gRt~~~~knr~~~  153 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLP-GRTDNAIKNHWNS  153 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST-TCCHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCC-CCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988 9999999999983

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=2.5e-32  Score=233.47  Aligned_cols=128  Identities=33%  Similarity=0.596  Sum_probs=108.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIA   94 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA   94 (351)
                      ||+||+|||++|+.+|.+||.++|..||+.| ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            7999999999999999999988999999999 699999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhhh
Q 039198           95 TRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAAA  147 (351)
Q Consensus        95 ~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~  147 (351)
                      .+|||||+.+|++||+++|++.+..+.++.+--.+.    ...+.+|+.|+..
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p~----~~kk~~~~~i~k~  129 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPD----RSKKRKAADVPKK  129 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCCC----CC-----------
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCch----hhhhhhhhhcchh
Confidence            999999999999999999999998888766543321    2234556666543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.97  E-value=2.6e-32  Score=224.37  Aligned_cols=105  Identities=47%  Similarity=0.941  Sum_probs=99.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWS   91 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~   91 (351)
                      ++++|+||+|||++|+++|++||.++|..||+.| ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||.+|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            4789999999999999999999988999999999 699999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198           92 AIATRLPGRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        92 ~IA~~lpgRT~~qcr~RW~~~Lr~~i  117 (351)
                      .||+.|||||+.+|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998753

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=7.4e-33  Score=235.52  Aligned_cols=120  Identities=24%  Similarity=0.442  Sum_probs=96.9

Q ss_pred             ccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198           41 LPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQ  119 (351)
Q Consensus        41 IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~  119 (351)
                      ||+.+ |+|+++||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|||||+.||++||.++|.|.+++
T Consensus         1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            67778 799999999999999999999999999999999999999995 6999999999999999999999999999999


Q ss_pred             CCCCccCcchhhhHHHHhCCCchHHhhhccCCCCCCCCCCccc
Q 039198          120 MGIDPVTHRPRTDLNNVLANLPQLLAAANFAVGNLMNVPNSWD  162 (351)
Q Consensus       120 ~~~t~eEd~~l~~l~~~~Gn~w~~Ia~~~~~grt~~~~~n~wn  162 (351)
                      ++||++||..|++++..+|++|+.||..++ ||+++.|+|+|+
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~-gRt~~~~k~r~~  121 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLP-GRTDNAVKNHWN  121 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGST-TCCHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHCC-CCCHHHHHHHHH
Confidence            999999999999999999999999999988 999999999998

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.97  E-value=8e-32  Score=222.90  Aligned_cols=104  Identities=33%  Similarity=0.622  Sum_probs=100.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIA   94 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA   94 (351)
                      ||+||+|||++|+.+|.+||.++|..||..| ++|+++||++||.++|+|.+++|+||+|||++|+.+|.+||.+|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT-TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc-CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            6899999999999999999988999999999 599999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHhhhhhhhc
Q 039198           95 TRLPGRTDNEIKNFWNTHLKKKLLQ  119 (351)
Q Consensus        95 ~~lpgRT~~qcr~RW~~~Lr~~ik~  119 (351)
                      ..|||||+.+|++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999887654

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.97  E-value=3.1e-31  Score=225.53  Aligned_cols=106  Identities=45%  Similarity=0.935  Sum_probs=101.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKW   90 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW   90 (351)
                      |++++|+||+|||++|+++|++||.++|..||+.+ ++|++.||++||.++|+|.+++|+||+|||++|+++|.+||.+|
T Consensus        23 p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W  101 (128)
T 1h8a_C           23 PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW  101 (128)
T ss_dssp             TTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            88999999999999999999999988999999999 69999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198           91 SAIATRLPGRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~i  117 (351)
                      ..||+.|||||+.+|++||+.++++++
T Consensus       102 ~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C          102 AEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999988753

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=5.4e-31  Score=223.95  Aligned_cols=104  Identities=39%  Similarity=0.700  Sum_probs=100.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCch
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKW   90 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW   90 (351)
                      +..+||+||+|||++|+++|.+||. +|..||+.+ ++|+++||++||.++|+|.+++|+||+|||++|+++|.+||.+|
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            6889999999999999999999997 999999999 58999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           91 SAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        91 ~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      ..||..|||||+.+|++||..++++.
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999888764

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=7.1e-29  Score=218.01  Aligned_cols=107  Identities=46%  Similarity=0.912  Sum_probs=101.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc
Q 039198           10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNK   89 (351)
Q Consensus        10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k   89 (351)
                      .|++++++||+|||++|+.+|.+||..+|..||+.| ++|++.||+.||.++|+|.+++++||+|||++|++++.+||.+
T Consensus        53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~  131 (159)
T 1h89_C           53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR  131 (159)
T ss_dssp             CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCC
Confidence            388999999999999999999999987899999999 6999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198           90 WSAIATRLPGRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        90 W~~IA~~lpgRT~~qcr~RW~~~Lr~~i  117 (351)
                      |..||+.|||||+.+|++||+.++++++
T Consensus       132 W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          132 WAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999888753

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.91  E-value=1.4e-25  Score=184.17  Aligned_cols=97  Identities=23%  Similarity=0.389  Sum_probs=93.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchH
Q 039198           65 DIKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQL  143 (351)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~  143 (351)
                      ++++|+||+|||++|+++|.+||. +|..||..||||++.||+.||.++|.|.+++++||++||..|++++..+|++|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            378999999999999999999995 6999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCCCCCCccc
Q 039198          144 LAAANFAVGNLMNVPNSWD  162 (351)
Q Consensus       144 Ia~~~~~grt~~~~~n~wn  162 (351)
                      ||..++ ||+++.|+++|+
T Consensus        81 Ia~~l~-gRt~~~~k~rw~   98 (105)
T 1gv2_A           81 IAKLLP-GRTDNAIKNHWN   98 (105)
T ss_dssp             HHTTCT-TCCHHHHHHHHH
T ss_pred             HHHHcC-CCCHHHHHHHHH
Confidence            999988 999999999998

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.91  E-value=2.1e-25  Score=189.42  Aligned_cols=99  Identities=17%  Similarity=0.265  Sum_probs=95.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCch
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQ  142 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~  142 (351)
                      .+..++|+||+|||++|+++|.+||.+|..||..|+||++.||+.||.++|.|.+.+++||++||..|++++..||+.|+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCCCCCCccc
Q 039198          143 LLAAANFAVGNLMNVPNSWD  162 (351)
Q Consensus       143 ~Ia~~~~~grt~~~~~n~wn  162 (351)
                      .||..++ ||+++.|+++|.
T Consensus        86 ~Ia~~l~-gRt~~~~k~rw~  104 (126)
T 3osg_A           86 IIAKFFP-GRTDIHIKNRWV  104 (126)
T ss_dssp             HHHTTST-TCCHHHHHHHHH
T ss_pred             HHHHHcC-CCCHHHHHHHHH
Confidence            9999988 999999999998

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.90  E-value=3.7e-25  Score=182.86  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAA  146 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~  146 (351)
                      ||+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.|.+.+++||++||..|+.++..||++|..||.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            689999999999999999995 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCccc
Q 039198          147 ANFAVGNLMNVPNSWD  162 (351)
Q Consensus       147 ~~~~grt~~~~~n~wn  162 (351)
                      .++ ||+++.|+++|.
T Consensus        81 ~l~-gRt~~~~k~rw~   95 (107)
T 2k9n_A           81 FLK-NRSDNNIRNRWM   95 (107)
T ss_dssp             HHS-SSCHHHHHHHHH
T ss_pred             HCC-CCCHHHHHHHHH
Confidence            988 999999999998

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.89  E-value=1.6e-24  Score=185.02  Aligned_cols=94  Identities=21%  Similarity=0.347  Sum_probs=91.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHhCCCchHHhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVLANLPQLLAA  146 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~Gn~w~~Ia~  146 (351)
                      ||+||+|||++|+++|..|| ++|..||..||||++.||+.||.++|.|.+.+++||++||..|++++..+|++|+.||.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            79999999999999999999 77999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCCCCCCccc
Q 039198          147 ANFAVGNLMNVPNSWD  162 (351)
Q Consensus       147 ~~~~grt~~~~~n~wn  162 (351)
                      .++ ||+++.|+++|+
T Consensus        82 ~l~-gRt~~~~k~rw~   96 (131)
T 3zqc_A           82 LIP-GRTDNAIKNRWN   96 (131)
T ss_dssp             TST-TCCHHHHHHHHH
T ss_pred             HcC-CCCHHHHHHHHH
Confidence            988 999999999998

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=5e-21  Score=146.94  Aligned_cols=65  Identities=29%  Similarity=0.620  Sum_probs=63.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCHHHH
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEE   76 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED   76 (351)
                      +.+++++||+|||++|+++|.+||.++|..||+.| ++|+++||+.||.++|+|.+++|+||+|||
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL-HRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS-TTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh-cCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            78999999999999999999999988999999999 599999999999999999999999999997

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.4e-19  Score=138.75  Aligned_cols=65  Identities=20%  Similarity=0.341  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCc
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTH  127 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd  127 (351)
                      .|.+++|+||+|||++|+++|.+|| ++|..||.+|++||++|||+||.++|+|.+++++||++||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999999999999999999999998

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=5e-17  Score=123.18  Aligned_cols=60  Identities=23%  Similarity=0.366  Sum_probs=57.6

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCC
Q 039198           61 YLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMG  121 (351)
Q Consensus        61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~  121 (351)
                      +|+|.+++++||+|||++|+++|+.||.+|..||. ++|||++|||+||+++|++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            78999999999999999999999999999999999 8899999999999999999998765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.67  E-value=2.6e-17  Score=127.95  Aligned_cols=60  Identities=23%  Similarity=0.386  Sum_probs=47.4

Q ss_pred             cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198           54 CRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        54 Cr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                      ..-||.++|+|.+++|+||+|||++|+++|.+||.+|+.||+.| |||+++||+||+. |+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~   68 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKD   68 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHH
Confidence            34689999999999999999999999999999999999999999 9999999999985 443

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=6.1e-17  Score=120.41  Aligned_cols=56  Identities=23%  Similarity=0.422  Sum_probs=53.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhhhh
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKKLL  118 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik  118 (351)
                      .|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.|||+||+++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            4788999999999999999999999 6999999999999999999999999999874

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.66  E-value=1.1e-16  Score=123.57  Aligned_cols=66  Identities=24%  Similarity=0.318  Sum_probs=61.1

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcc
Q 039198           62 LRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHR  128 (351)
Q Consensus        62 L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~  128 (351)
                      ..|.+++++||+|||++|+++|.+||.+|..||.+|||||+.|||+||+.++++.++. ++++++..
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s   68 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN   68 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence            5789999999999999999999999999999999999999999999999999999877 77776653

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.65  E-value=7.8e-17  Score=149.82  Aligned_cols=105  Identities=23%  Similarity=0.362  Sum_probs=91.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccccccccccccccCCCCC------------------
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHG-----SWRALPKLAGLNRCGKSCRLRWTNYLRPDIK------------------   67 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~-----nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lk------------------   67 (351)
                      +.++|++||+|||+.|+++|.++|..     .|.+||+.| +|||+.||+.||..+|++.+.                  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-pGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-CCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            57899999999999999999999764     399999999 799999999999999999986                  


Q ss_pred             -----------CCCCCHHHHHHHHHHHHH-h-------------------------------------------------
Q 039198           68 -----------RGKFSEEEEQLIVNLHAV-L-------------------------------------------------   86 (351)
Q Consensus        68 -----------rg~WT~EED~~Ll~lv~~-~-------------------------------------------------   86 (351)
                                 +.+||.|||-.|+..+.+ |                                                 
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       899999999999998876 2                                                 


Q ss_pred             ----CC----chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           87 ----GN----KWSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        87 ----G~----kW~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                          |.    .|..||+.+|+||..+.|+||...|+..
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                11    5999999999999999999999888764

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.65  E-value=2.1e-16  Score=120.85  Aligned_cols=63  Identities=25%  Similarity=0.298  Sum_probs=57.8

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhhhhhcCCCC
Q 039198           61 YLRPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP--GRTDNEIKNFWNTHLKKKLLQMGID  123 (351)
Q Consensus        61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcr~RW~~~Lr~~ik~~~~t  123 (351)
                      ...+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||.++|++.+.+...+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            346678899999999999999999999 79999999999  9999999999999999999887653

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.64  E-value=2.3e-16  Score=114.02  Aligned_cols=51  Identities=27%  Similarity=0.574  Sum_probs=47.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      +++|+||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            47899999999999999999996 8999999999999999999999999873

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.63  E-value=2.3e-16  Score=114.08  Aligned_cols=51  Identities=31%  Similarity=0.707  Sum_probs=48.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-chhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLGN-KWSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      +++|+||+|||++|+++|.+||. +|..||..|+|||++|||+||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            57899999999999999999996 6999999999999999999999999873

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.63  E-value=5.5e-17  Score=137.34  Aligned_cols=83  Identities=18%  Similarity=0.348  Sum_probs=77.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---ccccccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 039198           10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYLR-----PDIKRG-KFSEEEEQLIV   80 (351)
Q Consensus        10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg---p~Rs~kqCr~Rw~n~L~-----p~lkrg-~WT~EED~~Ll   80 (351)
                      .+..++++||+|||+.|+++|++||.+.|..|++.++   ++||+.+|++||.++++     |.+++| +|++||+.+|+
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~   91 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL   91 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence            3678999999999999999999999999999998742   68999999999999998     999999 99999999999


Q ss_pred             HHHHHhCCchhh
Q 039198           81 NLHAVLGNKWSA   92 (351)
Q Consensus        81 ~lv~~~G~kW~~   92 (351)
                      .++..+|++|.+
T Consensus        92 ~~h~~~gn~~~~  103 (121)
T 2juh_A           92 AAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHccchhc
Confidence            999999999977

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.63  E-value=1.1e-16  Score=135.57  Aligned_cols=86  Identities=20%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             CccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHH
Q 039198            4 LQISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSEEE   75 (351)
Q Consensus         4 ~~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg---p~Rs~kqCr~Rw~n~L-----~p~lkrg~WT~EE   75 (351)
                      +.+.......++++||+|||+.|+++|++||.++|..|++.++   ++||+.+|++||.+++     .|.+++|.|+++|
T Consensus        20 ~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e   99 (122)
T 2roh_A           20 SKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE   99 (122)
T ss_dssp             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred             CCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence            3444455678999999999999999999999999999998532   5899999999999998     7999999999999


Q ss_pred             -HHHHHHHHHHhCCc
Q 039198           76 -EQLIVNLHAVLGNK   89 (351)
Q Consensus        76 -D~~Ll~lv~~~G~k   89 (351)
                       +.+|+.++..||+.
T Consensus       100 ~~~~v~~~h~~~g~~  114 (122)
T 2roh_A          100 LLDRVLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhhH
Confidence             89999999999964

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.62  E-value=1.4e-16  Score=134.79  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=75.2

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC----CCCCHHHHHHHHHHhhh-----hhhhcC-CCCccCcchh
Q 039198           62 LRPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL----PGRTDNEIKNFWNTHLK-----KKLLQM-GIDPVTHRPR  130 (351)
Q Consensus        62 L~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l----pgRT~~qcr~RW~~~Lr-----~~ik~~-~~t~eEd~~l  130 (351)
                      +.+..++++||+|||+.|+++|++|| ++|+.|+..+    ++||+.+||+||+++++     |.++++ +|+++++..+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            56678899999999999999999999 5999999984    89999999999999999     888887 6777778889


Q ss_pred             hhHHHHhCCCchHH
Q 039198          131 TDLNNVLANLPQLL  144 (351)
Q Consensus       131 ~~l~~~~Gn~w~~I  144 (351)
                      +++|..+||+|+.-
T Consensus        91 ~~~h~~~gn~~~~~  104 (121)
T 2juh_A           91 LAAHAYWSQQQGKQ  104 (121)
T ss_dssp             HHHHHHHHHHHCCS
T ss_pred             HHHHHHHccchhcc
Confidence            99999999999873

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=2.4e-16  Score=117.24  Aligned_cols=56  Identities=30%  Similarity=0.585  Sum_probs=53.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCC
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIK   67 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lk   67 (351)
                      |.+++++||+|||++|+++|.+||.++|..||+.| ++|++.||+.||.++|+|.++
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence            78999999999999999999999988999999999 699999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=3.4e-16  Score=113.20  Aligned_cols=52  Identities=48%  Similarity=0.943  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   65 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~   65 (351)
                      +++++||+|||++|+++|.+||.++|..||+.+ ++|+++||+.||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence            579999999999999999999988899999999 6999999999999999984

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.58  E-value=1.9e-15  Score=109.87  Aligned_cols=49  Identities=29%  Similarity=0.369  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP--GRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcr~RW~~~Lr~  115 (351)
                      ++|+||+|||++|+++|.+|| ++|..||..++  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            589999999999999999999 79999999999  99999999999999874

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.57  E-value=2.3e-15  Score=112.25  Aligned_cols=54  Identities=13%  Similarity=0.262  Sum_probs=50.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      .+.+.+++||+|||++|+++|.+|| ++|..||++|++||+.|||+||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            3578899999999999999999999 79999999999999999999999998753

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.56  E-value=2.5e-15  Score=127.40  Aligned_cols=79  Identities=19%  Similarity=0.216  Sum_probs=70.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC----CCCCHHHHHHHHHHhh-----hhhhhcCCCCccC-cchhh
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL----PGRTDNEIKNFWNTHL-----KKKLLQMGIDPVT-HRPRT  131 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l----pgRT~~qcr~RW~~~L-----r~~ik~~~~t~eE-d~~l~  131 (351)
                      ....++++||+|||+.|+++|++|| ++|..|++.+    ++||+.+||+||++++     .|.++++.|+++| +..++
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            3456789999999999999999999 5999999864    8999999999999999     5888898899988 67889


Q ss_pred             hHHHHhCCCc
Q 039198          132 DLNNVLANLP  141 (351)
Q Consensus       132 ~l~~~~Gn~w  141 (351)
                      ++|..+|++-
T Consensus       106 ~~h~~~g~~~  115 (122)
T 2roh_A          106 AAQAYWSVDS  115 (122)
T ss_dssp             HHHHHHHSSC
T ss_pred             HHHHHHhhHH
Confidence            9999999874

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.56  E-value=3e-15  Score=113.34  Aligned_cols=53  Identities=28%  Similarity=0.453  Sum_probs=47.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhhhhh
Q 039198           65 DIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP--GRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcr~RW~~~Lr~~i  117 (351)
                      ..+|++||+|||++|+++|.+|| ++|..||+.++  +||+.|||+||++++++.+
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            35789999999999999999999 68999999876  9999999999999998865

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.56  E-value=4.9e-16  Score=112.26  Aligned_cols=52  Identities=33%  Similarity=0.765  Sum_probs=47.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   65 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~   65 (351)
                      +++++||+|||++|+++|.+||.++|..||+.+ ++|++.||+.||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence            579999999999999999999988999999999 6999999999999999984

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=4.5e-15  Score=114.99  Aligned_cols=62  Identities=16%  Similarity=0.117  Sum_probs=56.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCc
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG------NKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDP  124 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G------~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~  124 (351)
                      +|.+.+++||+|||++|+++|.+||      .+|..||.+|++||+.||++||+++|.+.++.+-..|
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~p   70 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPVS   70 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            5788999999999999999999999      6899999999999999999999999999887765433

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.54  E-value=9.4e-16  Score=117.21  Aligned_cols=62  Identities=24%  Similarity=0.372  Sum_probs=57.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccccccCCCCCCCCCC
Q 039198           10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKRGKFS   72 (351)
Q Consensus        10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp--~Rs~kqCr~Rw~n~L~p~lkrg~WT   72 (351)
                      .+..++++||+|||++|+++|++||.++|..||+.+ +  +|++.||+.||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS-CCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc-CcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            367899999999999999999999988999999999 5  8999999999999999999988754

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.52  E-value=2.6e-15  Score=139.64  Aligned_cols=73  Identities=18%  Similarity=0.310  Sum_probs=63.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHhhhhhhh-------------------
Q 039198           64 PDIKRGKFSEEEEQLIVNLHAVLGNK------WSAIATRLPGRTDNEIKNFWNTHLKKKLL-------------------  118 (351)
Q Consensus        64 p~lkrg~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~qcr~RW~~~Lr~~ik-------------------  118 (351)
                      +.+++++||+|||++|+++|.+||.+      |..||++|||||++|||+||+++|++.+.                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            35788999999999999999999865      99999999999999999999999999985                   


Q ss_pred             ----------cCCCCccCcchhhhHHHH
Q 039198          119 ----------QMGIDPVTHRPRTDLNNV  136 (351)
Q Consensus       119 ----------~~~~t~eEd~~l~~l~~~  136 (351)
                                +..|+.+||-.|...+..
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~  111 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKK  111 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred             eeeeccCccccCccchhccHHHHHHHHH
Confidence                      788999999888876665

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.51  E-value=1.7e-14  Score=106.88  Aligned_cols=50  Identities=22%  Similarity=0.425  Sum_probs=46.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC-CCCHHHHHHHHHHhh
Q 039198           64 PDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP-GRTDNEIKNFWNTHL  113 (351)
Q Consensus        64 p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~qcr~RW~~~L  113 (351)
                      ..+.+++||+|||++|+++|++|| ++|..||++|+ +||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346688999999999999999999 89999999999 999999999999875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=2.5e-15  Score=113.77  Aligned_cols=55  Identities=31%  Similarity=0.486  Sum_probs=49.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCC
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLRPDI   66 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg-p~Rs~kqCr~Rw~n~L~p~l   66 (351)
                      ..+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||.++++|++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            46899999999999999999999989999998752 38999999999999999876

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.48  E-value=5.7e-15  Score=110.08  Aligned_cols=54  Identities=17%  Similarity=0.511  Sum_probs=50.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   65 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~   65 (351)
                      +.+++++||+|||++|+++|++||.++|..||+.+ ++|++.||+.||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-TTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-CCCCHHHHHHHHHHHccCC
Confidence            67999999999999999999999988999999999 6999999999999998765

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.45  E-value=1.1e-14  Score=105.76  Aligned_cols=49  Identities=31%  Similarity=0.522  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccc--cccccccccccccccC
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLR   63 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp--~Rs~kqCr~Rw~n~L~   63 (351)
                      ++++||+|||++|+++|++||.++|..||+.+ +  +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS-CCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCCCHHHHHHHHHHHHc
Confidence            58999999999999999999988999999998 6  8999999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=5.7e-15  Score=111.82  Aligned_cols=57  Identities=23%  Similarity=0.448  Sum_probs=52.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCC
Q 039198           10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG   69 (351)
Q Consensus        10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg   69 (351)
                      +|.+++++||+|||++|+++|+.||. +|..||+ + ++|++.||+.||.++|+|.++++
T Consensus         4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCC
Confidence            38999999999999999999999997 9999999 5 46999999999999999877664

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.14  E-value=1.4e-14  Score=116.26  Aligned_cols=56  Identities=27%  Similarity=0.288  Sum_probs=52.9

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           61 YLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        61 ~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      .+.|.+.+|+||+|||++|+++|..||.+|..||.+|+|||+.||++||+++|++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999998864

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.42  E-value=2.7e-14  Score=105.83  Aligned_cols=52  Identities=23%  Similarity=0.456  Sum_probs=47.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L   62 (351)
                      ..+.+++||+|||++|+++|++||.++|..||+.++.+|+++||+.||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3466899999999999999999998899999999944899999999999865

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=2.1e-14  Score=111.19  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccccccccccccccccccCCCCCCCCC
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGH-----GSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKF   71 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~-----~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~W   71 (351)
                      |++++++||+|||++|+++|.+||.     .+|..||+.| ++||+.||+.||.++|.+.++.|..
T Consensus         4 p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-~~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            4 GSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-GNRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-SSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            8899999999999999999999996     6899999999 5999999999999999988887653

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.40  E-value=3.4e-13  Score=111.59  Aligned_cols=76  Identities=18%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhccC----CCCCHHHHHHHHHHhhh-----hhhhcCCCCccCcch-hh
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRL----PGRTDNEIKNFWNTHLK-----KKLLQMGIDPVTHRP-RT  131 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~l----pgRT~~qcr~RW~~~Lr-----~~ik~~~~t~eEd~~-l~  131 (351)
                      .+..++++||+|||+.|+++|++|| ++|..|+..+    ++||+.+||+||+++++     |.++++.-.|.+-.. ++
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~   87 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL   87 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence            3467889999999999999999999 5999999976    89999999999999995     677777656655444 44


Q ss_pred             hHHHHhC
Q 039198          132 DLNNVLA  138 (351)
Q Consensus       132 ~l~~~~G  138 (351)
                      +|+..+|
T Consensus        88 ~~~~~~~   94 (105)
T 2aje_A           88 NAHGYWT   94 (105)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5665554

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.35  E-value=8.3e-14  Score=107.29  Aligned_cols=56  Identities=21%  Similarity=0.310  Sum_probs=52.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCC
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR   68 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkr   68 (351)
                      |.+++++||+|||++|+++|.+||. +|..||+.+ ++|++.||+.||..++++.++.
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence            8899999999999999999999997 999999999 6999999999999998877665

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.32  E-value=1.7e-12  Score=103.07  Aligned_cols=67  Identities=21%  Similarity=0.269  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHHHHHHhC-Cchhhhhcc----CCCCCHHHHHHHHHHhhh-----hhhhcCCCCc-cCcchhhhHHH
Q 039198           69 GKFSEEEEQLIVNLHAVLG-NKWSAIATR----LPGRTDNEIKNFWNTHLK-----KKLLQMGIDP-VTHRPRTDLNN  135 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G-~kW~~IA~~----lpgRT~~qcr~RW~~~Lr-----~~ik~~~~t~-eEd~~l~~l~~  135 (351)
                      ++||+|||+.|+++|++|| ++|+.|++.    +++||+.+||+||+++++     |.++++.-.| +....++.+|.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a   78 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA   78 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence            4799999999999999999 599999985    899999999999999995     4455443223 33334445444

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.31  E-value=1.8e-12  Score=100.60  Aligned_cols=52  Identities=12%  Similarity=0.273  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      .+...+++||+|||.+|+.++..||    .+|..||.+|||||++||++||..+++
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3557789999999999999999999    579999999999999999999997654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.30  E-value=1.2e-12  Score=103.07  Aligned_cols=49  Identities=14%  Similarity=0.295  Sum_probs=45.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 039198           64 PDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTH  112 (351)
Q Consensus        64 p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~  112 (351)
                      ....+++||+|||++|+++|++||++|..||+++++||+.||+.||.++
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3456899999999999999999999999999999999999999999866

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.30  E-value=8.7e-13  Score=109.11  Aligned_cols=78  Identities=22%  Similarity=0.360  Sum_probs=67.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----CCCCCCCCCCHHHHH-HHH
Q 039198           10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG---LNRCGKSCRLRWTNYL-----RPDIKRGKFSEEEEQ-LIV   80 (351)
Q Consensus        10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg---p~Rs~kqCr~Rw~n~L-----~p~lkrg~WT~EED~-~Ll   80 (351)
                      ....++++||+|||+.|+++|++||.++|..|++.++   ++||+.+|++||.+++     .|.+++|.=+|+|-. +++
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~   87 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL   87 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence            3678999999999999999999999999999998552   6899999999999988     689999988888774 488


Q ss_pred             HHHHHhC
Q 039198           81 NLHAVLG   87 (351)
Q Consensus        81 ~lv~~~G   87 (351)
                      +++..+|
T Consensus        88 ~~~~~~~   94 (105)
T 2aje_A           88 NAHGYWT   94 (105)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.27  E-value=1.5e-12  Score=103.35  Aligned_cols=69  Identities=22%  Similarity=0.454  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 039198           16 GPWTPEEDQKLIDYIRKHGHGSWRALPKL----AGLNRCGKSCRLRWTNYL-----RPDIKRG-KFSEEEEQLIVNLHAV   85 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~----lgp~Rs~kqCr~Rw~n~L-----~p~lkrg-~WT~EED~~Ll~lv~~   85 (351)
                      ++||+|||+.|+++|++||.++|..|++.    + ++||+.+|++||.+++     .|.+++| +..++...+++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999985    5 6899999999999987     5776665 5777777888888754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.27  E-value=1.1e-12  Score=101.84  Aligned_cols=55  Identities=25%  Similarity=0.389  Sum_probs=47.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCC
Q 039198           10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKR   68 (351)
Q Consensus        10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkr   68 (351)
                      +|++++++||+|||++|+++|++||. .|..||+.+  +||+.||+.||.. |....+.
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            38999999999999999999999997 699999988  6999999999985 5444443

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.17  E-value=9e-12  Score=97.99  Aligned_cols=49  Identities=18%  Similarity=0.429  Sum_probs=46.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   61 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~   61 (351)
                      ....+++||+|||++|+++|++|| ++|..||+.++ +||+.||+.||.++
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            678899999999999999999999 79999999995 89999999999998

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.75  E-value=4.3e-12  Score=101.78  Aligned_cols=53  Identities=23%  Similarity=0.427  Sum_probs=49.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCC
Q 039198           10 INNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRP   64 (351)
Q Consensus        10 ~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p   64 (351)
                      .|++++|+||+|||++|+++|.+||. +|..||+.+ ++||+.||+.||.++|+.
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR   63 (89)
Confidence            48899999999999999999999997 899999999 699999999999998764

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.08  E-value=1.5e-10  Score=86.92  Aligned_cols=49  Identities=20%  Similarity=0.410  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhh---ccCCCCCHHHHHHHHHHhhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLGNKWSAIA---TRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~kW~~IA---~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                      .+.+||+|||+.|++.|++||.+|..|+   ..+++||+..+++||+++.+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            5789999999999999999999999999   577899999999999987664

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.06  E-value=1.4e-10  Score=93.95  Aligned_cols=49  Identities=22%  Similarity=0.464  Sum_probs=44.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                      .+++||.|||++|++++..||    .+|..||.++||||.++|++||..++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   59 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            467999999999999999996    5699999999999999999999987755

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.06  E-value=1.9e-11  Score=94.83  Aligned_cols=52  Identities=13%  Similarity=0.376  Sum_probs=47.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      +...+++||+|||++|+.+|.+||.   ..|.+||+.| |+||..||+.||..++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence            6788999999999999999999983   4799999999 69999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=4.3e-09  Score=78.51  Aligned_cols=47  Identities=9%  Similarity=0.138  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHL  113 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~L  113 (351)
                      ..++||+||++++++++..||.+|..||..||+||..+|+.+|+...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45789999999999999999999999999999999999999997543

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.71  E-value=1.3e-08  Score=82.24  Aligned_cols=67  Identities=13%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             ccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHhhhhhhhcCC
Q 039198           51 GKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIATRL-----PGRTDNEIKNFWNTHLKKKLLQMG  121 (351)
Q Consensus        51 ~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~qcr~RW~~~Lr~~ik~~~  121 (351)
                      +.=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++.++..+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34578899999976    89999999999999999999999999988     589999999999998888776553

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.70  E-value=1.8e-09  Score=87.46  Aligned_cols=48  Identities=10%  Similarity=0.324  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHG---HGSWRALPKLAGLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g---~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L   62 (351)
                      .+++||+|||++|+.++.+|+   ...|..||+.+ |+||..+|+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v-pGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            467999999999999999997   34799999999 5999999999998864

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.62  E-value=3.7e-08  Score=76.08  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=44.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198           65 DIKRGKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                      ..+++.||.|||++|.+++.+|+    .+|..||..+ |||.++|+.||..+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45678999999999999999997    4599999998 99999999999876554

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.61  E-value=8.4e-09  Score=77.43  Aligned_cols=50  Identities=14%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccccC
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHGHGSWRALP---KLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA---~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      ..++++||+|||+.|++.|++||. .|..|+   .++ ++|+..++..||.++.+
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQ-KGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCC-TTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCc-cCcccchHHHHHHHHHh
Confidence            347899999999999999999998 999999   465 68999999999998654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.55  E-value=7.2e-08  Score=89.12  Aligned_cols=50  Identities=20%  Similarity=0.345  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                      -..++||+||++++++++.+||.+|..||+.+++||..||+++|+++.++
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999987764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.49  E-value=1.4e-07  Score=70.15  Aligned_cols=47  Identities=23%  Similarity=0.438  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhc-cCCCCCHHHHHHHHHHhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVL--------GNK-WSAIAT-RLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~--------G~k-W~~IA~-~lpgRT~~qcr~RW~~~Lr  114 (351)
                      |.+||+|||+.|+++|.+|        |++ |..+|+ .+|++|-.+||+||..+|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 8999999999999998775

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=6.1e-08  Score=72.21  Aligned_cols=50  Identities=14%  Similarity=0.204  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L   62 (351)
                      .....++||+||++++.+++.+||. +|..||+.+ ++|+..||..+|....
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l-~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL-ERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC-TTSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHHHhc
Confidence            4456799999999999999999995 999999998 6999999999986543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.39  E-value=4e-08  Score=75.91  Aligned_cols=51  Identities=18%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      .+.+++.||.|||++|..++.+|+.   ..|..||+.+|  |+..+|+.||..+..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence            3566889999999999999999984   46999999985  999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.30  E-value=3.8e-07  Score=92.65  Aligned_cols=46  Identities=22%  Similarity=0.389  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           69 GKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      .+||.||-+++++++.+||.+|..||..++.||..|||.+|.++-+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999975444

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.23  E-value=1e-06  Score=68.27  Aligned_cols=48  Identities=21%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHHhhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLGN----KWSAIATRLPGRTDNEIKNFWNTHLKK  115 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcr~RW~~~Lr~  115 (351)
                      ...||.||+.+|.+++..|+.    +|..||..+||||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999973    599999999999999999999876543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.18  E-value=2.8e-07  Score=68.45  Aligned_cols=48  Identities=23%  Similarity=0.490  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccC
Q 039198           15 KGPWTPEEDQKLIDYIRKH--------GHGSWRALPK-LAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~--------g~~nW~~IA~-~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      |.+||+|||+.|+++|.+|        |..-|+.+++ .+ |++|..+||+||.++|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4445999998 66 89999999999998775

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.02  E-value=1.1e-06  Score=67.95  Aligned_cols=49  Identities=22%  Similarity=0.424  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccC
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGH---GSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~---~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      ....||.||+++|..++..|+.   +.|..||+.+| +|+..+|+.||..++.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            3468999999999999999975   57999999994 8999999999998754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.86  E-value=3e-06  Score=78.34  Aligned_cols=49  Identities=29%  Similarity=0.474  Sum_probs=44.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      ....+||+||++++++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            45779999999999999999995 9999999995 9999999999988764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.79  E-value=4.5e-05  Score=57.05  Aligned_cols=49  Identities=18%  Similarity=0.249  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHHH
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLGNKWSAIAT-RLPGRTDNEIKNFWNT  111 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcr~RW~~  111 (351)
                      .|.++...||+||-.+..+.+.+||.+|..|++ .+++|+..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            367778899999999999999999999999999 5899999999988753

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.74  E-value=4.4e-05  Score=61.16  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhhhhhh
Q 039198           69 GKFSEEEEQLIVNLHAVLGN---KWSAIATRLPGRTDNEIKNFWNTHLKKKLL  118 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik  118 (351)
                      --||.|||..|+..+++-|.   .|..||+.|.+|+.+|+++||+.+++-.-+
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            35999999999999999996   699999999999999999999987765433

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.64  E-value=1.1e-05  Score=62.29  Aligned_cols=44  Identities=11%  Similarity=0.309  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---Ccccccccccccccccccccccc
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHG---SWRALPKLAGLNRCGKSCRLRWT   59 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~---nW~~IA~~lgp~Rs~kqCr~Rw~   59 (351)
                      .+.||.||+++|..++..|..+   .|.+||+.+ |+|+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V-pGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV-KGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS-CSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc-CCCCHHHHHHHHH
Confidence            5689999999999999999753   799999999 5899999999996

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.58  E-value=1.7e-05  Score=61.31  Aligned_cols=43  Identities=19%  Similarity=0.344  Sum_probs=38.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHH
Q 039198           68 RGKFSEEEEQLIVNLHAVLGN----KWSAIATRLPGRTDNEIKNFWN  110 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcr~RW~  110 (351)
                      .+.||.||+++|..++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999984    5999999999999999998874

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.45  E-value=0.00014  Score=70.00  Aligned_cols=100  Identities=20%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------ccccc---------------------------
Q 039198           16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRL-------RWTNY---------------------------   61 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~-------Rw~n~---------------------------   61 (351)
                      +.||..+...++.++.+||..+|..||..++ +++...++.       ||...                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999995 788776622       22100                           


Q ss_pred             -------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhc------------cCCCCCHHHHHHHH
Q 039198           62 -------------L---RPDIKRGKFSEEEEQLIVNLHAVLGN----KWSAIAT------------RLPGRTDNEIKNFW  109 (351)
Q Consensus        62 -------------L---~p~lkrg~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~qcr~RW  109 (351)
                                   |   -+.-+...||.|||..|+-++.+||-    .|..|..            .+..||..++..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   01223457999999999999999994    4999962            33579999999999


Q ss_pred             HHhhhhh
Q 039198          110 NTHLKKK  116 (351)
Q Consensus       110 ~~~Lr~~  116 (351)
                      ..+++-.
T Consensus       270 ~tLi~~i  276 (304)
T 1ofc_X          270 NTLITLI  276 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888643

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.54  E-value=2.1e-05  Score=59.85  Aligned_cols=44  Identities=14%  Similarity=0.348  Sum_probs=40.7

Q ss_pred             CCCHHHHHHHHHHHHHhCC---chhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           70 KFSEEEEQLIVNLHAVLGN---KWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      .||.|||..|+..+++-|.   .|..||..| +|+.+|+.+||..+++
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            5999999999999999996   699999999 9999999999987665

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.30  E-value=0.00031  Score=56.55  Aligned_cols=44  Identities=18%  Similarity=0.180  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHH
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNT  111 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~  111 (351)
                      ...||+||.++..+....||.+|..||..||+||..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            36799999999999999999999999999999999999998853

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.30  E-value=9.2e-05  Score=55.33  Aligned_cols=48  Identities=17%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWTN   60 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~-~lgp~Rs~kqCr~Rw~n   60 (351)
                      |.++...||+||-++..+++.+||. +|..|++ .+ +.|+..+|..-|..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v-~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELL-PNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHc-CCCcHHHHHHHHhc
Confidence            7888899999999999999999997 9999998 57 69999999877753

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.15  E-value=0.00073  Score=51.48  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhc-cCCCCCHHHHHHHHH
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIAT-RLPGRTDNEIKNFWN  110 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~qcr~RW~  110 (351)
                      ...||+||-.+..+.+..||.+|..|++ .+++|+..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4589999999999999999999999999 589999999999886

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.01  E-value=0.0013  Score=52.95  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=46.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccC-----CCCCHHHHHHHHHHhhhhhhhcC
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRL-----PGRTDNEIKNFWNTHLKKKLLQM  120 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~qcr~RW~~~Lr~~ik~~  120 (351)
                      ...||.||...|++|+.+|+-+|.-|+...     +.||-.++|.||..+.++.++..
T Consensus        30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            368999999999999999999999999776     37999999999999888776543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.88  E-value=0.00083  Score=52.56  Aligned_cols=50  Identities=14%  Similarity=0.421  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----------CchhhhhccCC----CCCHHHHHHHHHHhhhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLG----------NKWSAIATRLP----GRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G----------~kW~~IA~~lp----gRT~~qcr~RW~~~Lr~~  116 (351)
                      +...||.+|-..||.+...+.          ..|..||..|.    .||+.||+.+|.++.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            356899999999999997531          13999998872    799999999999877664

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=96.75  E-value=0.00042  Score=55.91  Aligned_cols=49  Identities=16%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG----LNRCGKSCRLRWTNYL   62 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg----p~Rs~kqCr~Rw~n~L   62 (351)
                      ++..+||.||++.|++++++|+. .|..|+..+.    ++||..+++.||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            44589999999999999999996 9999998773    4799999999998653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.73  E-value=0.00037  Score=70.83  Aligned_cols=47  Identities=28%  Similarity=0.475  Sum_probs=42.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L   62 (351)
                      ...+||.||-+++++++.+||. +|..||+.+| .|+..||+..|.++.
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4689999999999999999996 9999999997 899999999987643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.45  E-value=0.00025  Score=55.60  Aligned_cols=49  Identities=24%  Similarity=0.603  Sum_probs=39.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGH---------GSWRALPKLA---GLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~---------~nW~~IA~~l---gp~Rs~kqCr~Rw~n~L   62 (351)
                      +...||.+|-..|+++...+..         .-|..||..|   |..|++.||+.+|.++.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            5689999999999999875321         1599999754   57899999999998754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.35  E-value=0.0011  Score=50.46  Aligned_cols=44  Identities=11%  Similarity=0.151  Sum_probs=39.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPK-LAGLNRCGKSCRLRWT   59 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~-~lgp~Rs~kqCr~Rw~   59 (351)
                      ....||+||-++..+++.+||. +|..|++ .+ ++|+..+|..-|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v-~~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFL-PWKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTC-SSSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHc-CCCCHHHHHHHHH
Confidence            4568999999999999999997 9999998 58 6999999977765

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.29  E-value=0.0043  Score=55.66  Aligned_cols=42  Identities=14%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC--CCCccccccccc-ccccccc
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHG--HGSWRALPKLAG-LNRCGKS   53 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g--~~nW~~IA~~lg-p~Rs~kq   53 (351)
                      .-....||..|-..|+.++.+||  .+.|..|++... .+++...
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~   48 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETD   48 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHH
Confidence            34567899999999999999999  568999975321 2444444

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.27  E-value=0.0013  Score=52.95  Aligned_cols=44  Identities=11%  Similarity=0.295  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTN   60 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n   60 (351)
                      ...||+||.+++.++...||. +|..|++.+ +.|+..+|.+.|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l-~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFL-ERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTC-TTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHc-CCCCHHHHHHHHhc
Confidence            468999999999999999996 999999988 69999999877743

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=95.84  E-value=0.015  Score=57.39  Aligned_cols=101  Identities=23%  Similarity=0.281  Sum_probs=75.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc-------cccccc---------------------------
Q 039198           16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCR-------LRWTNY---------------------------   61 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr-------~Rw~n~---------------------------   61 (351)
                      +.||.-|=..++.++.+||..+-..||..++++++...++       .||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999989999999996567766652       111110                           


Q ss_pred             -------------cC----CC-CCCCCCCHHHHHHHHHHHHHhCC----chhhhhcc------------CCCCCHHHHHH
Q 039198           62 -------------LR----PD-IKRGKFSEEEEQLIVNLHAVLGN----KWSAIATR------------LPGRTDNEIKN  107 (351)
Q Consensus        62 -------------L~----p~-lkrg~WT~EED~~Ll~lv~~~G~----kW~~IA~~------------lpgRT~~qcr~  107 (351)
                                   |.    +. -++..||.+||..|+-++.+||-    .|..|-..            +..||...+..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         00    11 13456999999999999999994    49999432            35799999999


Q ss_pred             HHHHhhhhh
Q 039198          108 FWNTHLKKK  116 (351)
Q Consensus       108 RW~~~Lr~~  116 (351)
                      |...+++-.
T Consensus       284 Rc~tLi~~I  292 (374)
T 2y9y_A          284 RGNTLLQCL  292 (374)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888654

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=94.82  E-value=0.0015  Score=49.75  Aligned_cols=48  Identities=15%  Similarity=0.261  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccccC
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGH--GSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~--~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      .--.||.|||..|+..+++.|.  .-|..||+.+  +|++.|+..||...++
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            3457999999999999999885  3699999888  5999999999987543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=95.63  E-value=0.0019  Score=51.79  Aligned_cols=46  Identities=20%  Similarity=0.405  Sum_probs=40.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccccc
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGH--GSWRALPKLAGLNRCGKSCRLRWTN   60 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~--~nW~~IA~~lgp~Rs~kqCr~Rw~n   60 (351)
                      +--.||.|||..|+..+++.|.  .-|..||+.+| +|++.|+..|++.
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~   79 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE   79 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            3347999999999999999875  46999999996 8999999999965

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.36  E-value=0.068  Score=51.42  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhh--------------------------------
Q 039198           69 GKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKK--------------------------------  115 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~--------------------------------  115 (351)
                      +.||..+...++.++.+|| ..|..||..++|+|...|+.........                                
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999 6799999999999999886653211111                                


Q ss_pred             -h-----------------hhcCCCCccCcchhhhHHHHhCC----CchHHhhhc
Q 039198          116 -K-----------------LLQMGIDPVTHRPRTDLNNVLAN----LPQLLAAAN  148 (351)
Q Consensus       116 -~-----------------ik~~~~t~eEd~~l~~l~~~~Gn----~w~~Ia~~~  148 (351)
                       +                 -+...||.+||+-|+-.+.+||-    .|..|...+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I  245 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI  245 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence             0                 11256899999999999999995    788886543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.30  E-value=0.085  Score=39.59  Aligned_cols=48  Identities=13%  Similarity=0.057  Sum_probs=40.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCc---hhhhhccC--CCCCHHHHHHHHHHhh
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLGNK---WSAIATRL--PGRTDNEIKNFWNTHL  113 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~k---W~~IA~~l--pgRT~~qcr~RW~~~L  113 (351)
                      ..+-.||+|.-++.+++|..+|..   +..|-+.|  +|.|..+|+.+.+.|-
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999954   78888877  5899999999887653

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=93.47  E-value=0.052  Score=48.50  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             ccccccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 039198            5 QISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPK   43 (351)
Q Consensus         5 ~~c~~~~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~   43 (351)
                      +++.+ +......||.+||..|+..|.+||.++|..|-.
T Consensus       125 ~~~~~-~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A          125 PCHTK-AAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CSCCC-CCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCC-CCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence            33444 333455799999999999999999999999965

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=92.44  E-value=0.043  Score=44.09  Aligned_cols=48  Identities=17%  Similarity=0.321  Sum_probs=39.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----ccccccccccccccc
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG----LNRCGKSCRLRWTNY   61 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg----p~Rs~kqCr~Rw~n~   61 (351)
                      ++...||.||.+.|+++|++|+. .|-.|+....    ..|+..++++||...
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            44578999999999999999986 8999986553    368888899988764

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.98  E-value=0.14  Score=48.45  Aligned_cols=27  Identities=44%  Similarity=0.757  Sum_probs=25.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccc
Q 039198           17 PWTPEEDQKLIDYIRKHGHGSWRALPK   43 (351)
Q Consensus        17 ~WT~EED~~L~~~V~k~g~~nW~~IA~   43 (351)
                      .|+.+||..|+..|.+||.|+|..|..
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            599999999999999999999999974

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=87.18  E-value=0.37  Score=45.56  Aligned_cols=27  Identities=19%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             CCCCHHHHHHHHHHHHHhC-Cchhhhhc
Q 039198           69 GKFSEEEEQLIVNLHAVLG-NKWSAIAT   95 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G-~kW~~IA~   95 (351)
                      ..|+.+||..|+..|.+|| |.|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999 99999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-23
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-12
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-22
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-11
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-19
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	4e-19
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-18
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-18
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	3e-08
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-17
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-12
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-13
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	7e-15
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-09
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	6e-14
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	8e-13
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-04
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-11
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	5e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	4e-04

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.2 bits (219), Expect = 5e-23
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
          + KGPWT EEDQ+LI  ++K+G   W  + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (139), Expect = 7e-12
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 66  IKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK 114
           + +G +++EE+Q ++ L    G  +WS IA  L GR   + +  W+ HL 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.2 bits (211), Expect = 7e-22
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD 65
          K  WT EED+KL   + ++G   W+ +      NR    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 68  RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLK 114
           + +++ EE++ +  L    G + W  IA  LP RTD + ++ W   L 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.2 bits (195), Expect = 3e-19
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 15 KGPWTPEEDQKLIDYIRKHGHG-----SWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRG 69
          K  +T EED+ ++D +RK+         +  +      N  G S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 70 KFSEEEEQLIVNLHAVLGN 88
             ++  +L+ +    L  
Sbjct: 60 YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.0 bits (145), Expect = 2e-12
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 68  RGKFSEEEEQLIVNLHAVLGNK------WSAIATRLPGRTDNEIKNFWNTHLKKKL 117
           +  F++EE++ I+++      +      +  I+  +P  T N I++ +  +L K+L
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 78.6 bits (193), Expect = 4e-19
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 17 PWTPEEDQKLIDYIRKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYLR-----PDIKR 68
          P++  E + L++ +   G G WR +   A     +R     + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 69 GKFSEEEE-QLIVNLHAVLGNK 89
          G+   ++    ++  HA    +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 2e-18
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLR 63
          K+  W  EED+ L   +RK+G G+W  +       NR     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (186), Expect = 2e-18
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL-NRCGKSCRLRWTNYLRPDI 66
          KK  WT EE + +   ++K+G G+W A+ K     NR     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGNK-WSAIATR--LPGRTDNEIKNFWNTHLKKKL 117
           K+ K++ EE + +       G   W+AI+       RT   IK+ W T  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (179), Expect = 3e-17
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEE 74
             WT EE +     + K G   W  + KL G +R     +     Y +  +K G   E 
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 75 EEQ 77
            Q
Sbjct: 60 PNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 1e-12
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 68  RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKL 117
             K++ EE++L     A  G +W+ I+  +  RT  ++K++   + K K+
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (162), Expect = 4e-15
 Identities = 23/47 (48%), Positives = 34/47 (72%)

Query: 68  RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK 114
           +  ++EEE+++I   H  LGN+W+ IA  LPGRTDN IKN WN+ ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR 63
          K  WT EED+ +    ++ G+        L G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 7e-15
 Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 6  ISDEINNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRW 58
          +  E     + PWT  + + L   ++++  GS     K+A    ++  + C  R+
Sbjct: 3  LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 5e-09
 Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 63  RPDIKRGKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFW 109
           R       +++ +++L+            + W  IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 6e-14
 Identities = 10/49 (20%), Positives = 25/49 (51%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115
              +++ EE+ L V      G  + AI+  +  ++  ++KNF+  + ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR---PDIKRGK 70
              WT EE    +  IRK+G   ++A+  + G N+     +  + NY R    D    +
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQE 61

Query: 71 FSEE 74
          +  E
Sbjct: 62 WEAE 65

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 9/49 (18%), Positives = 18/49 (36%)

Query: 67  KRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKK 115
               +SE+E++            +  IA+ L  +T  E   ++    K 
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 8e-13
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 18 WTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY 61
          WT +E+  L++ +   G G+W+ +       +  + C   +  Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 71  FSEEEEQLIVNLHAVLGNK-WSAIATRLPGRTDNEIKNFWNTH 112
           ++ +EE  ++      G   W  +A ++  +T  E +  +  +
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 17 PWTPEEDQKLIDYIRKHGHGSWRALPKLAGL--NRCGKSCRLRWTNYLRPDIKR 68
          PW+ +E++     +  +   +      +A     R  +  +  +   L  DIK 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 70  KFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTHLKK-KLLQMGIDP 124
            +S +E +      AV      ++W+ +A  + GRT  E+K  +   ++  K ++ G  P
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 62

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 57  RWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNK---WSAIATRLPGRTDNEIKNFWNTHL 113
             +       K   ++ E +++I+ +    G +   +S I+ +L  +T  E+ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 114 K 114
           +
Sbjct: 82  Q 82

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 5  QISDEINNIKKGPWTPEEDQKLIDYIRKHG--HGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                   K   WT E D+ ++   ++ G    ++  + +  G N+       R+   +
Sbjct: 23 NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81

Query: 63 R 63
          +
Sbjct: 82 Q 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.72
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.65
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.63
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.57
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.43
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.43
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.42
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.37
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.37
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.33
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.29
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.23
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.17
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.16
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.12
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.04
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.03
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.02
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.7
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.68
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.44
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.87
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.72
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.55
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.49
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.7
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	96.25
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.2
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	94.94
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.16
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	90.35
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	83.55
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	83.08

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=9.5e-19  Score=138.19  Aligned_cols=70  Identities=20%  Similarity=0.297  Sum_probs=65.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCc------hhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCcchhhhHHHHh
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNK------WSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTHRPRTDLNNVL  137 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd~~l~~l~~~~  137 (351)
                      |+.||+|||++|+++|.+||..      |..||+.|||||++|||+||+++|.|.++++.|+++|++.+.+.+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999964      999999999999999999999999999999999999999999876554

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.3e-17  Score=119.74  Aligned_cols=51  Identities=31%  Similarity=0.718  Sum_probs=48.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      +.||+||+|||++|+++|++|| ++|..||+.|++||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999 68999999999999999999999999874

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3.6e-19  Score=140.63  Aligned_cols=69  Identities=23%  Similarity=0.341  Sum_probs=63.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccccccccccccccCCCCCCCCCCHHHHHHHHHHHH
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHG-----SWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHA   84 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~-----nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~   84 (351)
                      |++||+|||++|+++|.+||..     +|..||+.| |+||++||+.||.++|+|.++++.||++||.+|+..+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~l-pgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~   74 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   74 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHc-CCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhh
Confidence            6899999999999999999864     499999999 79999999999999999999999999999998876543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.2e-17  Score=118.59  Aligned_cols=52  Identities=48%  Similarity=0.943  Sum_probs=49.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   65 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~   65 (351)
                      ++||+||+|||++|+++|++||.++|..||+.| ++||+.||+.||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCCHHHHHHHHHhhCCCC
Confidence            579999999999999999999988999999999 5999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.7e-16  Score=111.72  Aligned_cols=47  Identities=49%  Similarity=0.970  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      |++||+|||++|+++|++||.+|..||.+|||||+.+||+||+++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.1e-16  Score=112.34  Aligned_cols=49  Identities=29%  Similarity=0.597  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      |++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|.|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            57899999999999999999 68999999999999999999999999873

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.4e-16  Score=113.22  Aligned_cols=50  Identities=34%  Similarity=0.784  Sum_probs=47.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCC
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPD   65 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~   65 (351)
                      |++||+|||++|+++|.+||.++|.+||+.| ++|++.||+.||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCCHHHHHHHHHhhCCCC
Confidence            6899999999999999999988999999999 6999999999999999984

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.53  E-value=4.6e-16  Score=121.62  Aligned_cols=74  Identities=20%  Similarity=0.448  Sum_probs=61.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccc---ccccccccccccccccc-----CCCCCCCCCCHHHHHHHHHHHHHhC
Q 039198           16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLA---GLNRCGKSCRLRWTNYL-----RPDIKRGKFSEEEEQLIVNLHAVLG   87 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~l---gp~Rs~kqCr~Rw~n~L-----~p~lkrg~WT~EED~~Ll~lv~~~G   87 (351)
                      .+||+|||+.|+++|++||.++|..|++.+   +++|++.||++||.++|     .+..+++.|+++|   |+..|..++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999753   46899999999999988     4678899999877   455555555


Q ss_pred             Cchhh
Q 039198           88 NKWSA   92 (351)
Q Consensus        88 ~kW~~   92 (351)
                      .+|+.
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66753

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=105.03  Aligned_cols=51  Identities=27%  Similarity=0.451  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-Cchhhhhcc--CCCCCHHHHHHHHHHhhhhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLG-NKWSAIATR--LPGRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G-~kW~~IA~~--lpgRT~~qcr~RW~~~Lr~~i  117 (351)
                      +|++||+|||+.|+++|.+|| ++|..||+.  +++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            578999999999999999999 689999987  459999999999999998865

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=103.33  Aligned_cols=48  Identities=29%  Similarity=0.391  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CchhhhhccCC--CCCHHHHHHHHHHhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLG-NKWSAIATRLP--GRTDNEIKNFWNTHLK  114 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~qcr~RW~~~Lr  114 (351)
                      ++++||+|||+.|+++|.+|| ++|..||..++  +||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 68999998754  9999999999998754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.9e-14  Score=103.70  Aligned_cols=60  Identities=22%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhhhhhhcCCCCccCc
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLKKKLLQMGIDPVTH  127 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik~~~~t~eEd  127 (351)
                      ...||+|||++|+++|..||.+|..||.+||+||+.||++||+.++++..+.+.....+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~~   61 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPN   61 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            357999999999999999999999999999999999999999999999887776555443

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.43  E-value=6e-14  Score=109.37  Aligned_cols=70  Identities=21%  Similarity=0.261  Sum_probs=54.2

Q ss_pred             CCCHHHHHHHHHHHHHhC-Cchhhhhcc----CCCCCHHHHHHHHHHhhhhhhh-----cCCCCccCcchhhhHHHHhCC
Q 039198           70 KFSEEEEQLIVNLHAVLG-NKWSAIATR----LPGRTDNEIKNFWNTHLKKKLL-----QMGIDPVTHRPRTDLNNVLAN  139 (351)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~----lpgRT~~qcr~RW~~~Lr~~ik-----~~~~t~eEd~~l~~l~~~~Gn  139 (351)
                      +||+|||+.|+++|.+|| ++|..|++.    +++||+.||++||+++|++...     ++.++|+|   ++..+..++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            799999999999999999 689999975    5799999999999999976544     44444433   4444444445


Q ss_pred             Cch
Q 039198          140 LPQ  142 (351)
Q Consensus       140 ~w~  142 (351)
                      +|+
T Consensus        79 ~ws   81 (83)
T d2ckxa1          79 YWS   81 (83)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            564

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.9e-15  Score=105.54  Aligned_cols=53  Identities=32%  Similarity=0.525  Sum_probs=48.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccCCCC
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAG-LNRCGKSCRLRWTNYLRPDI   66 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lg-p~Rs~kqCr~Rw~n~L~p~l   66 (351)
                      ||++||+|||++|+++|++||.++|..|++.++ ++|++.||++||.+++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            588999999999999999999989999998631 58999999999999998875

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.8e-13  Score=95.91  Aligned_cols=43  Identities=16%  Similarity=0.373  Sum_probs=41.1

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHHHHh
Q 039198           70 KFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFWNTH  112 (351)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW~~~  112 (351)
                      .||.|||++|+++|.+|| ++|..||++|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 6799999999999999999999876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.8e-14  Score=101.32  Aligned_cols=50  Identities=30%  Similarity=0.471  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccc-cccccccccccccccccC
Q 039198           14 KKGPWTPEEDQKLIDYIRKHGHGSWRALPKLA-GLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        14 kKg~WT~EED~~L~~~V~k~g~~nW~~IA~~l-gp~Rs~kqCr~Rw~n~L~   63 (351)
                      ++++||+|||+.|+++|++||.++|..|++.+ ..+|++.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            58999999999999999999999999999764 248999999999998653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.2e-13  Score=96.88  Aligned_cols=47  Identities=28%  Similarity=0.618  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      |++||+|||+.|+++|++||. .|..||+.+ |+||+.||+.||.++++
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLL-PGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTC-TTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHc-CCCCHHHHHHHHHHHcC
Confidence            689999999999999999997 899999999 79999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-13  Score=96.46  Aligned_cols=44  Identities=20%  Similarity=0.647  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 039198           17 PWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNY   61 (351)
Q Consensus        17 ~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~   61 (351)
                      .||+|||++|+++|++||.++|..||+.++ +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999999999999995 99999999999876

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.4e-12  Score=94.15  Aligned_cols=49  Identities=12%  Similarity=0.276  Sum_probs=44.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHH
Q 039198           63 RPDIKRGKFSEEEEQLIVNLHAVLGN----KWSAIATRLPGRTDNEIKNFWNT  111 (351)
Q Consensus        63 ~p~lkrg~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcr~RW~~  111 (351)
                      .+...+++||+|||++|+++|..||.    +|..||..|||||+.||+.||..
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            45677889999999999999999994    49999999999999999999975

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.23  E-value=4.3e-12  Score=93.68  Aligned_cols=49  Identities=24%  Similarity=0.470  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----chhhhhccCCCCCHHHHHHHHHHhhhhhhh
Q 039198           69 GKFSEEEEQLIVNLHAVLGN----KWSAIATRLPGRTDNEIKNFWNTHLKKKLL  118 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~qcr~RW~~~Lr~~ik  118 (351)
                      .+||+|||++|+++|..||.    +|..||.+|||||+.||+.||+ +|...++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~-~L~~dik   54 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIK   54 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHH-HHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHH-HHHHHhh
Confidence            47999999999999999994    4999999999999999999995 5555544

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.1e-12  Score=93.51  Aligned_cols=49  Identities=16%  Similarity=0.432  Sum_probs=44.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHG---SWRALPKLAGLNRCGKSCRLRWTN   60 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~---nW~~IA~~lgp~Rs~kqCr~Rw~n   60 (351)
                      +..++++||+|||++|+++|.+||.+   +|..||+.| ++|++.||+.||..
T Consensus         8 ~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l-~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           8 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKL   59 (60)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHc-CCCCHHHHHHHHHH
Confidence            67888999999999999999999976   499999999 59999999999964

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=2.4e-11  Score=96.49  Aligned_cols=70  Identities=13%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             ccccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCc---hhhhhccCCCCCHHHHHHHHHHhhhhh
Q 039198           47 LNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIVNLHAVLGNK---WSAIATRLPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        47 p~Rs~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~k---W~~IA~~lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      |..+..++..++.+..+.+.+...||.|||+.|+..++++|.+   |..||..|+||++.|||+||..+++-.
T Consensus        12 p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          12 PKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            5677788888888888888888999999999999999999977   999999999999999999999877654

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3e-12  Score=94.69  Aligned_cols=56  Identities=25%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccCCCCCCCCCCH
Q 039198           16 GPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSE   73 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p~lkrg~WT~   73 (351)
                      .+||+|||++|+++|..||. +|..||+.| ++||+.||+.||.+++++..+.+.+..
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~ry~~~~~~~~k~~~~~~   58 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKCGLDKE   58 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcc-hHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            57999999999999999995 999999999 599999999999999888777766554

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.7e-11  Score=87.12  Aligned_cols=47  Identities=21%  Similarity=0.383  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~Lr  114 (351)
                      +.+||+|||++|+.++..||.+|..||.+|||||..+|++||..+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            35799999999999999999999999999999999999999987654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8e-11  Score=87.84  Aligned_cols=47  Identities=17%  Similarity=0.141  Sum_probs=43.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCchhhhhccCCCCCHHHHHHHHHHh
Q 039198           66 IKRGKFSEEEEQLIVNLHAVLGNKWSAIATRLPGRTDNEIKNFWNTH  112 (351)
Q Consensus        66 lkrg~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~qcr~RW~~~  112 (351)
                      -...+||+|||++|+.++..||.+|..||.+||+||..||+++|...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999754

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.02  E-value=1.7e-11  Score=90.33  Aligned_cols=45  Identities=11%  Similarity=0.357  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCC---ccccccccccccccccccccccc
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGS---WRALPKLAGLNRCGKSCRLRWTN   60 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~n---W~~IA~~lgp~Rs~kqCr~Rw~n   60 (351)
                      ..+||+|||++|+++|.+||.+.   |..||..+ ++||+.||+.||..
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l-~gRt~~qc~~r~~~   48 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEI   48 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHc-CCCCHHHHHHHHHH
Confidence            35899999999999999999764   99999999 69999999999954

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.3e-09  Score=80.31  Aligned_cols=47  Identities=28%  Similarity=0.451  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccC
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      ..+||+|||++|++++.+||. +|..||+.+ ++||..||+.+|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~-~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVI-GNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH-SSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHc-CCCCHHHHHHHHHHHHh
Confidence            357999999999999999995 899999999 59999999999988654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.2e-09  Score=79.83  Aligned_cols=50  Identities=10%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L   62 (351)
                      ......+||+|||++|+++|.+||. +|..||+.+ ++|+..||+.+|....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~-~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFL-ERKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHT-TTSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            4455678999999999999999995 999999999 6999999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=1.5e-08  Score=80.04  Aligned_cols=50  Identities=16%  Similarity=0.283  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--cccccccccccccccccccccccc
Q 039198           11 NNIKKGPWTPEEDQKLIDYIRKHGHGS--WRALPKLAGLNRCGKSCRLRWTNY   61 (351)
Q Consensus        11 ~~lkKg~WT~EED~~L~~~V~k~g~~n--W~~IA~~lgp~Rs~kqCr~Rw~n~   61 (351)
                      .+.+...||.|||+.|+..|+++|...  |..||+.| ++|++.||+.||...
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L-~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL-GNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH-SSCCHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHc-CCCCHHHHHHHHHHH
Confidence            456788999999999999999999633  99999999 589999999999753

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=1.1e-05  Score=57.66  Aligned_cols=42  Identities=19%  Similarity=0.329  Sum_probs=39.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCchhhhhcc-CCCCCHHHHHHHHHH
Q 039198           70 KFSEEEEQLIVNLHAVLGNKWSAIATR-LPGRTDNEIKNFWNT  111 (351)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G~kW~~IA~~-lpgRT~~qcr~RW~~  111 (351)
                      .||+||-.+..+.+..||.+|..|++. +|+|+..+|.+.|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999999999999985 599999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.4e-05  Score=57.56  Aligned_cols=43  Identities=19%  Similarity=0.353  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CchhhhhccCCCCCHHHHHHHHHHh
Q 039198           69 GKFSEEEEQLIVNLHAVLG----NKWSAIATRLPGRTDNEIKNFWNTH  112 (351)
Q Consensus        69 g~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~qcr~RW~~~  112 (351)
                      +.||.||+..|.+++.+|.    .+|..||..+ ||+..+|..|+..+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            4799999999999999996    3499999999 99999999999743

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=5.6e-06  Score=59.80  Aligned_cols=45  Identities=20%  Similarity=0.336  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccccccc
Q 039198           16 GPWTPEEDQKLIDYIRKHGHG---SWRALPKLAGLNRCGKSCRLRWTNYL   62 (351)
Q Consensus        16 g~WT~EED~~L~~~V~k~g~~---nW~~IA~~lgp~Rs~kqCr~Rw~n~L   62 (351)
                      +.||+||+.+|..++.+|..+   .|..||..+|  |+..+|..||..+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999643   5999999996  99999999997643

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=1.5e-05  Score=56.92  Aligned_cols=43  Identities=12%  Similarity=0.074  Sum_probs=38.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccc
Q 039198           17 PWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTN   60 (351)
Q Consensus        17 ~WT~EED~~L~~~V~k~g~~nW~~IA~~lgp~Rs~kqCr~Rw~n   60 (351)
                      .||+||-.++.+++..||. +|..|++.+.++|+..+|...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcCCCCHHHHHHHHHH
Confidence            6999999999999999996 999999865579999999888764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00014  Score=52.15  Aligned_cols=47  Identities=21%  Similarity=0.395  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------Cc-hhhhhc-cCCCCCHHHHHHHHHHhhh
Q 039198           68 RGKFSEEEEQLIVNLHAVLG--------NK-WSAIAT-RLPGRTDNEIKNFWNTHLK  114 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G--------~k-W~~IA~-~lpgRT~~qcr~RW~~~Lr  114 (351)
                      |-+||.|||+.|+++|..+.        +. |..+++ .++.+|-.+-|+||..+|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            45899999999999998873        22 999984 6799999999999998875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.70  E-value=0.0013  Score=47.69  Aligned_cols=47  Identities=13%  Similarity=0.097  Sum_probs=38.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCch---hhhhccC--CCCCHHHHHHHHHHhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLGNKW---SAIATRL--PGRTDNEIKNFWNTHL  113 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~kW---~~IA~~l--pgRT~~qcr~RW~~~L  113 (351)
                      .|-.||+||.++.+.++..+|..|   ..|...|  +++|..+|+.+.+.|.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999876   4666554  7999999999877653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.00054  Score=49.06  Aligned_cols=49  Identities=20%  Similarity=0.420  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------CcccccccccccccccccccccccccC
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHG--------SWRALPKLAGLNRCGKSCRLRWTNYLR   63 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~--------nW~~IA~~lgp~Rs~kqCr~Rw~n~L~   63 (351)
                      +-+||.|||+.|+++|.++...        =|+.+++.--|.+|..+-|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            5689999999999999998432        288888532278999999999988775

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.005  Score=41.36  Aligned_cols=45  Identities=22%  Similarity=0.463  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCchhhhhccC---CCCCHHHHHHHHHHh
Q 039198           68 RGKFSEEEEQLIVNLHAVLGNKWSAIATRL---PGRTDNEIKNFWNTH  112 (351)
Q Consensus        68 rg~WT~EED~~Ll~lv~~~G~kW~~IA~~l---pgRT~~qcr~RW~~~  112 (351)
                      |..||.||-.-|...|+.+|..|..|-=.+   +||+......+|...
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999999999996433   699999998888653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.014  Score=42.65  Aligned_cols=51  Identities=22%  Similarity=0.285  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCc----hhhhhccCCCCCHHHHHHHHHHhhhhhh
Q 039198           67 KRGKFSEEEEQLIVNLHAVLGNK----WSAIATRLPGRTDNEIKNFWNTHLKKKL  117 (351)
Q Consensus        67 krg~WT~EED~~Ll~lv~~~G~k----W~~IA~~lpgRT~~qcr~RW~~~Lr~~i  117 (351)
                      ..+.|+++|-++|-.++..+...    |..||..++.|+...|...|+..++.+-
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~   61 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKG   61 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSC
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccccc
Confidence            45689999999999999988733    9999999999999999999988766543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.94  E-value=0.0047  Score=44.66  Aligned_cols=50  Identities=12%  Similarity=0.169  Sum_probs=37.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCc--cccccccc-ccccccccccccccc
Q 039198           12 NIKKGPWTPEEDQKLIDYIRKHGHGSW--RALPKLAG-LNRCGKSCRLRWTNY   61 (351)
Q Consensus        12 ~lkKg~WT~EED~~L~~~V~k~g~~nW--~~IA~~lg-p~Rs~kqCr~Rw~n~   61 (351)
                      ...+-.||+||-++++++|..+|.+.|  ..|...|+ +++|..||+-+.+.|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            345678999999999999999997444  35655553 567888887665543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.0079  Score=43.97  Aligned_cols=51  Identities=22%  Similarity=0.377  Sum_probs=43.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHh---CCCCcccccccccccccccccccccccccCC
Q 039198           13 IKKGPWTPEEDQKLIDYIRKH---GHGSWRALPKLAGLNRCGKSCRLRWTNYLRP   64 (351)
Q Consensus        13 lkKg~WT~EED~~L~~~V~k~---g~~nW~~IA~~lgp~Rs~kqCr~Rw~n~L~p   64 (351)
                      ..-+.|+++|=++|-.++...   ..+-|..||..+| .|++..|...|...+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            345699999999999998754   4567999999998 99999999999876543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.35  E-value=0.044  Score=36.62  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=36.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCcccccc--ccccccccccccccccc
Q 039198           15 KGPWTPEEDQKLIDYIRKHGHGSWRALPK--LAGLNRCGKSCRLRWTN   60 (351)
Q Consensus        15 Kg~WT~EED~~L~~~V~k~g~~nW~~IA~--~lgp~Rs~kqCr~Rw~n   60 (351)
                      +..||.||-.-|...|+++|. .|..|-=  -+.++|++.++..+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            457999999999999999996 9999862  23468999888777754

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.55  E-value=0.71  Score=37.02  Aligned_cols=52  Identities=23%  Similarity=0.370  Sum_probs=40.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-Cc---hhhhhcc------------CCCCCHHHHHHHHHHhhhhh
Q 039198           65 DIKRGKFSEEEEQLIVNLHAVLG-NK---WSAIATR------------LPGRTDNEIKNFWNTHLKKK  116 (351)
Q Consensus        65 ~lkrg~WT~EED~~Ll~lv~~~G-~k---W~~IA~~------------lpgRT~~qcr~RW~~~Lr~~  116 (351)
                      .-++..+|.|||.-|+-.+.+|| ++   |..|-..            +..||+..+.-|..++|+-.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI  113 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHH
Confidence            33444699999999999999999 66   8887421            25799999999998877654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.08  E-value=1.3  Score=30.17  Aligned_cols=40  Identities=15%  Similarity=0.348  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHHHHHHhC-CchhhhhccCCCCCHHHHHHHH
Q 039198           70 KFSEEEEQLIVNLHAVLG-NKWSAIATRLPGRTDNEIKNFW  109 (351)
Q Consensus        70 ~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~qcr~RW  109 (351)
                      .|+.-|=..++++..+|| .+-..||..+.|+|...|+...
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~   41 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN   41 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHH
Confidence            489999999999999999 6799999999999999987643