Citrus Sinensis ID: 039201

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MINSISFSSVATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccHHHHHHcccccccccccccHHccccccEEEccccccEEEcccccccccccccccEEEcccccccccccHHcccccccccccccccccEEEcccccccccccccccccccccccccEEccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccEEEEEccccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHHHcccccccccHHHcccccccEEEccccccccccccccccHcccEEEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHHHHHccccccccccccHHHcccccccEEEcccccccc
Coil and Loop (DISEMBL)
minsisfsSVATLVWCFSLLLLStrthsnktDHLLAIKSqlqdplgptsswkaslnlcqwtgvtcshrhprvtkldlrsksiggflspfvgnpsFVRVIVLANNsyygeipnevgcLSRLETLiggyrlggkipeslgqlgsiNYLILAEnnfsgtlrsifnisslefqsseteksknrftgklgidfNSLINLARLNLgqknlgigttsdLDFITLLRNCSKLKTLqynqltgtipdttgelrnlqapdlsennlna
Flexible Loop (DISEMBL)
minsisfssvATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGvtcshrhprvtkLDLRSKSIGGflspfvgnpSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNIsslefqsseteksknrftgkLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTgtipdttgelrnlqapdlsennlna
Low Complexity Region (SEG)
MINSISFSSVATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA
Disordered region (IsUnstruct)
*****SFSSVATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLE************FTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIP*********************
Disordered Region (DISOPRED)
*****SFSSVATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLN*
Disordered Region (DISEMBL)
MINSISFSSVATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLE**********NRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA
Disordered Region (DISPRO)
*INSISFSSVATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINSISFSSVATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.899	0.229	0.333	1e-20
Q9FL28	1173	LRR receptor-like serine/	no	no	0.922	0.202	0.302	3e-20
Q9SD62	1025	Putative receptor-like pr	no	no	0.860	0.216	0.316	2e-18
O82318	960	Probably inactive leucine	no	no	0.825	0.221	0.325	2e-17
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.864	0.202	0.315	2e-17
Q8VYT3	648	Probable LRR receptor-lik	no	no	0.600	0.239	0.377	2e-17
C0LGT6	1031	LRR receptor-like serine/	no	no	0.972	0.243	0.275	5e-17
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.569	0.230	0.384	1e-16
Q9C9N5	685	Probable inactive leucine	no	no	0.841	0.316	0.330	8e-16
Q00874	372	DNA-damage-repair/tolerat	no	no	0.813	0.564	0.305	3e-15

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 128/288 (44%), Gaps = 56/288 (19%)

Query: 20  LLLSTRTHSNKTDH--LLAIKSQL-QDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLD 76
           +LL T   +++TD   LL  KSQ+ +D     SSW  S  LC W GVTC  ++ RVT L+
Sbjct: 13  MLLETHGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLE 72

Query: 77  LRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL------------I 124
           L    +GG +SP +GN SF+  + L  N + G IP EVG LSRLE L            +
Sbjct: 73  LGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPL 132

Query: 125 GGY-------------RLGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQS 170
           G Y             RLGG +P  LG L ++  L L  NN  G L  S+ N++ LE   
Sbjct: 133 GLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLE--- 189

Query: 171 SETEKSKNRFTGKLGIDFNSLINLARLNLGQKN-----------------LGIGTTS--- 210
            +   S N   G++  D   L  +  L L   N                 LGIG      
Sbjct: 190 -QLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSG 248

Query: 211 --DLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
               D   LL N      +  N  TG+IP T   +  L+   ++ENNL
Sbjct: 249 RLRPDLGILLPNLLSFN-MGGNYFTGSIPTTLSNISTLERLGMNENNL 295

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 140/304 (46%), Gaps = 66/304 (21%)

Query: 10  VATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQ-DPLGPTSSWK--ASLNLCQWTGVTCS 66
           + TL + F  + L+ ++   + + L + K+ +  DPLG  S W    SL  C WTG+TC 
Sbjct: 10  ILTLTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCD 69

Query: 67  HRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-- 124
                V  + L  K + G LSP + N ++++V+ L +NS+ G+IP E+G L+ L  LI  
Sbjct: 70  STG-HVVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILY 128

Query: 125 ----------GGYRLG-------------------------------------GKIPESL 137
                     G + L                                      GKIPE L
Sbjct: 129 LNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECL 188

Query: 138 GQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLAR 196
           G L  +   + A N+ +G++  SI  +++L    ++ + S N+ TGK+  DF +L+NL  
Sbjct: 189 GDLVHLQMFVAAGNHLTGSIPVSIGTLANL----TDLDLSGNQLTGKIPRDFGNLLNLQS 244

Query: 197 LNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQY--NQLTGTIPDTTGELRNLQAPDLSEN 254
           L L + NL  G     D    + NCS L  L+   NQLTG IP   G L  LQA  + +N
Sbjct: 245 LVLTE-NLLEG-----DIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKN 298

Query: 255 NLNA 258
            L +
Sbjct: 299 KLTS 302

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 123/284 (43%), Gaps = 62/284 (21%)

Query: 26  THSNKTDHLLAIKSQLQDP----LGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKS 81
           T       LL  KSQ+ +     LG   SW  SL LC WTGV C  +H RVT +DL    
Sbjct: 36  TEETDKQALLEFKSQVSETSRVVLG---SWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLK 92

Query: 82  IGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLE------TLIGGY-------- 127
           + G +SPFVGN SF+R + LA+N ++G IP+EVG L RL+       L GG         
Sbjct: 93  LTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNC 152

Query: 128 -----------------------------------RLGGKIPESLGQLGSINYLILAENN 152
                                               L GK P SLG L S+  L    N 
Sbjct: 153 SSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQ 212

Query: 153 FSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL 212
             G +    +I+ L+ Q      + N+F G       +L +L  L++   +   GT    
Sbjct: 213 IEGEIPG--DIARLK-QMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFS-GTLRP- 267

Query: 213 DFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
           DF +LL N   L  +  N  TGTIP+T   + +L+  D+  N+L
Sbjct: 268 DFGSLLPNLQILY-MGINSFTGTIPETLSNISSLRQLDIPSNHL 310

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 126/267 (47%), Gaps = 54/267 (20%)

Query: 17  FSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASL--NLCQWTGVTCSHRHPRVTK 74
           F L L  +  H+N+ + LL+ KS +QDPL   SSW  S   ++C W+GV C++   RV  
Sbjct: 18  FFLFLNFSCLHANELELLLSFKSSIQDPLKHLSSWSYSSTNDVCLWSGVVCNNIS-RVVS 76

Query: 75  LDLRSKSIGG-FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKI 133
           LDL  K++ G  L+       F++ I L+NN+  G IP+++   S               
Sbjct: 77  LDLSGKNMSGQILTAATFRLPFLQTINLSNNNLSGPIPHDIFTTSS-------------- 122

Query: 134 PESLGQLGSINYLILAENNFSGTLRSIF--NISSLEFQSSETEKSKNRFTGKLGIDFNSL 191
                   S+ YL L+ NNFSG++   F  N+ +L+        S N FTG++  D    
Sbjct: 123 -------PSLRYLNLSNNNFSGSIPRGFLPNLYTLDL-------SNNMFTGEIYNDIGVF 168

Query: 192 INLARLNLGQKNLG------IGTTSDLDFITLLRN---------CSKLKTLQ-----YNQ 231
            NL  L+LG   L       +G  S L+F+TL  N           K+K L+     YN 
Sbjct: 169 SNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMKNLKWIYLGYNN 228

Query: 232 LTGTIPDTTGELRNLQAPDLSENNLNA 258
           L+G IP   G L +L   DL  NNL+ 
Sbjct: 229 LSGEIPYQIGGLSSLNHLDLVYNNLSG 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 123/276 (44%), Gaps = 53/276 (19%)

Query: 32  DHLLAIKSQLQDPLGPTSSWKASLNL-CQWTGVTCSH--RHPRVTKLDLRSKSIGGFLSP 88
            +LL IKS+  D      +W ++ ++ C WTGV CS+    P V  L+L S  + G LSP
Sbjct: 32  QYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSP 91

Query: 89  FVG------------------------NPSFVRVIVLANNSYYGEIPNEVGCLSRLETL- 123
            +G                        N S + ++ L NN + GEIP E+G L  LE L 
Sbjct: 92  SIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLI 151

Query: 124 IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTG 182
           I   R+ G +P  +G L S++ L+   NN SG L RSI N+  L    +     +N  +G
Sbjct: 152 IYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRL----TSFRAGQNMISG 207

Query: 183 KLGIDFNSLINLARLNLGQKNLG------IGTTSDLDFITL------------LRNCSKL 224
            L  +     +L  L L Q  L       IG    L  + L            + NC+ L
Sbjct: 208 SLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSL 267

Query: 225 KTLQY--NQLTGTIPDTTGELRNLQAPDLSENNLNA 258
           +TL    NQL G IP   G+L++L+   L  N LN 
Sbjct: 268 ETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNG 303

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VYT3|Y4052_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana GN=At4g30520 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 4/159 (2%)

Query: 13  LVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKA-SLNLCQWTGVTCSHRHPR 71
           L  CFS L LS+   + + + L++I++ L DP G  ++W   S++ C W  +TCS  +  
Sbjct: 20  LFLCFSTLTLSSEPRNPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITCSPDN-L 78

Query: 72  VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLG 130
           V  L   S+S+ G LS  +GN + +R + L NN+  G+IP E+G L +L+TL +   R  
Sbjct: 79  VIGLGAPSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNNRFS 138

Query: 131 GKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEF 168
           G IP S+ QL S+ YL L  N+ SG    S+  I  L F
Sbjct: 139 GDIPVSIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSF 177

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 132/305 (43%), Gaps = 54/305 (17%)

Query: 5   ISFSSVA-TLVWCFSLLLLSTRTHSNKTDH--LLAIKSQLQD--PLGPTSSWKASLNLCQ 59
           +SFS V   L     + + +    SN+TD   LL  KSQ+ +       +SW  S   C 
Sbjct: 3   LSFSLVFNALTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCN 62

Query: 60  WTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR 119
           W GVTC  R  RV  L+L    + G +SP +GN SF+R++ LA+NS+   IP +VG L R
Sbjct: 63  WIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFR 122

Query: 120 LETLIGGY-------------------------RLGGKIPESLGQLGSINYLILAENNFS 154
           L+ L   Y                          LG  +P  LG L  +  L L++NN +
Sbjct: 123 LQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLT 182

Query: 155 G----TLRSIFNISSLEFQSSET-----------------EKSKNRFTGKLGIDFNSLIN 193
           G    +L ++ ++  L+F  ++                  + + N F+G       ++ +
Sbjct: 183 GNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISS 242

Query: 194 LARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSE 253
           L  L+L   +      +D  ++        L T   NQ TG IP T   + +L+  D+S 
Sbjct: 243 LESLSLADNSFSGNLRADFGYLLPNLRRLLLGT---NQFTGAIPKTLANISSLERFDISS 299

Query: 254 NNLNA 258
           N L+ 
Sbjct: 300 NYLSG 304

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 90/151 (59%), Gaps = 4/151 (2%)

Query: 21  LLSTRTHSNKTDHLLAIKSQLQDPLGPTSSW-KASLNLCQWTGVTCSHRHPRVTKLDLRS 79
           LLS +  + +   L+ IK+ L DP G   +W + +++ C WT VTCS  +  V  L   S
Sbjct: 32  LLSPKGVNFEVQALMDIKASLHDPHGVLDNWDRDAVDPCSWTMVTCSSEN-FVIGLGTPS 90

Query: 80  KSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLG 138
           +++ G LSP + N + +R+++L NN+  G+IP E+G L+RLETL +      G+IP S+G
Sbjct: 91  QNLSGTLSPSITNLTNLRIVLLQNNNIKGKIPAEIGRLTRLETLDLSDNFFHGEIPFSVG 150

Query: 139 QLGSINYLILAENNFSGTLR-SIFNISSLEF 168
            L S+ YL L  N+ SG    S+ N++ L F
Sbjct: 151 YLQSLQYLRLNNNSLSGVFPLSLSNMTQLAF 181

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 13/230 (5%)

Query: 34  LLAIKSQLQDPLGPT-SSWKAS-LNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVG 91
           LL+ K  +Q+      ++W +S  N C W GVTC++   RV  + L +K + G L P +G
Sbjct: 29  LLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNYDM-RVVSIRLPNKRLSGSLDPSIG 87

Query: 92  NPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE 150
           +   +R I L +N + G++P E+  L  L++L+  G    G +PE +G L S+  L L+E
Sbjct: 88  SLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSLKSLMTLDLSE 147

Query: 151 NNFSGTLRSIFNISSLEFQSSET-EKSKNRFTGKLGIDFNS-LINLARLNLGQKNLGIGT 208
           N+F+G++    ++S +  +  +T   SKN F+G L     S L++L  LNL    L    
Sbjct: 148 NSFNGSI----SLSLIPCKKLKTLVLSKNSFSGDLPTGLGSNLVHLRTLNLSFNRLTGTI 203

Query: 209 TSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA 258
             D   +  L N      L +N  +G IP + G L  L   DLS NNL+ 
Sbjct: 204 PED---VGSLENLKGTLDLSHNFFSGMIPTSLGNLPELLYVDLSYNNLSG 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q00874|DR100_ARATH DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 119/242 (49%), Gaps = 32/242 (13%)

Query: 36  AIKSQLQDP-LGPTSSWKASLNLC-QWTGVTCSHRHPRVTKLDLRSKS------------ 81
           A KS L +P LG  ++W  + + C +W G++C     RVT + LR +S            
Sbjct: 37  AFKSSLSEPNLGIFNTWSENTDCCKEWYGISCDPDSGRVTDISLRGESEDAIFQKAGRSG 96

Query: 82  -IGGFLSPFVGNPSFVRVIVLAN-NSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLG 138
            + G + P V + + +  +VLA+     GEIP  +  L+ L  L + G ++ G+IP  +G
Sbjct: 97  YMSGSIDPAVCDLTALTSLVLADWKGITGEIPPCITSLASLRILDLAGNKITGEIPAEIG 156

Query: 139 QLGSINYLILAENNFSG----TLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINL 194
           +L  +  L LAEN  SG    +L S+  +  LE        ++N  TG +  DF SL  L
Sbjct: 157 KLSKLAVLNLAENQMSGEIPASLTSLIELKHLEL-------TENGITGVIPADFGSLKML 209

Query: 195 ARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSEN 254
           +R+ LG+  L   T S  + I+ +   + L  L  N + G IP+  G ++ L   +L  N
Sbjct: 210 SRVLLGRNEL---TGSIPESISGMERLADLD-LSKNHIEGPIPEWMGNMKVLSLLNLDCN 265

Query: 255 NL 256
           +L
Sbjct: 266 SL 267

This protein is able to complement bacterial recA mutations, but its native function in the plant is not known.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
255575904	834	serine-threonine protein kinase, plant-t	0.868	0.268	0.341	7e-27
224116466	1008	predicted protein [Populus trichocarpa]	0.856	0.219	0.366	1e-26
255585471	963	serine-threonine protein kinase, plant-t	0.941	0.252	0.346	2e-26
255570308	1033	receptor-kinase, putative [Ricinus commu	0.844	0.211	0.353	2e-26
224081190	1011	predicted protein [Populus trichocarpa]	0.965	0.246	0.320	4e-26
255571732	923	serine-threonine protein kinase, plant-t	0.872	0.243	0.351	7e-26
255575908	988	serine-threonine protein kinase, plant-t	0.806	0.210	0.365	2e-25
359482058	1040	PREDICTED: probable LRR receptor-like se	0.895	0.222	0.289	9e-25
297818964	977	predicted protein [Arabidopsis lyrata su	0.891	0.235	0.332	1e-24
242092142	1054	hypothetical protein SORBIDRAFT_10g00476	0.841	0.205	0.36	1e-24

>gi|255575904|ref|XP_002528849.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531700|gb|EEF33523.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  126 bits (317), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 139/278 (50%), Gaps = 54/278 (19%)

Query: 29  NKTDHL--LAIKSQL-QDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGF 85
           N+TD L  L  K ++  DPLG  SSW  SL+ C+W G+TCS RH RVT+LDL S  + G 
Sbjct: 43  NQTDRLALLDFKDKITDDPLGVVSSWNRSLHFCKWYGITCSRRHQRVTRLDLSSLKLSGS 102

Query: 86  LSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL---------------------- 123
           +SP+VGN SF+R + L NNS+  EIP ++G L RL++L                      
Sbjct: 103 ISPYVGNLSFLRELYLENNSFSYEIPPQIGHLRRLQSLSLYNNSISGEIPSNISACSNLV 162

Query: 124 ---IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNR 179
              + G  L G+IPE L  L  + Y  L +NN  GT+ +S+ N+SS++  S+     +N+
Sbjct: 163 YLYLDGNNLVGEIPEELTSLMKLEYFFLGKNNLIGTIPQSLRNLSSIDTFSAY----RNK 218

Query: 180 FTGKLGIDFNSLINLARLNLGQK-------------------NLGIGTTSDLDFITLLRN 220
             G L   F  L+NL  L L                      ++GI        +TL+ +
Sbjct: 219 LHGVLPESFGRLMNLRILTLYDNQFSGNIPSSIFNLSSIESIDVGINHLHGTLPMTLVIS 278

Query: 221 CSKLK--TLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
              L   ++  NQ TG+IP +     NL+   L++N+L
Sbjct: 279 LPHLNFFSIGQNQFTGSIPTSISNASNLEILQLNQNSL 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/248 (36%), Positives = 131/248 (52%), Gaps = 27/248 (10%)

Query: 34  LLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNP 93
           LLA K+Q+ DP    SSW  SL+ CQW+GV C  +H RV +LDL S  + G LSP +GN 
Sbjct: 33  LLAFKAQISDPTTKLSSWNESLHFCQWSGVKCGRQHQRVIELDLHSSQLVGSLSPSIGNL 92

Query: 94  SFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN 152
           SF+R++ L NNS+   IP E+G L RL+TLI G     G+IP ++    ++  L L  NN
Sbjct: 93  SFLRLLSLENNSFTNAIPQEIGRLVRLQTLILGNNSFSGEIPSNISHCSNLLKLNLEGNN 152

Query: 153 FSGTLRS-IFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL------G 205
            +G L + + ++S L+  S      KN   GK+ + F +L ++  ++    N+       
Sbjct: 153 LTGNLPAGLGSLSKLQVFSFR----KNNLDGKIPLSFENLSSIIEIDGTLNNIQGGIPSS 208

Query: 206 IGTTSDLDFITL------------LRNCSKLK--TLQYNQLTGTIPDTTG-ELRNLQAPD 250
           IG    L+F +L            L N S L   +L YNQ  GT+P   G  L NLQ   
Sbjct: 209 IGKLKTLNFFSLGSNNLSGTIPASLYNISSLIHFSLPYNQFHGTLPPNIGLTLPNLQYLG 268

Query: 251 LSENNLNA 258
           + +N L+ 
Sbjct: 269 IHDNRLSG 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 14/257 (5%)

Query: 7   FSSVATLVWCFSLLLLSTRTHSNKTD--HLLAIKSQL-QDPLGPTSSWKASLNLCQWTGV 63
           F     L+ CFS    S+    N+TD   LL  KS++  DP     SW  +++ CQW GV
Sbjct: 16  FIPSGVLILCFSSTT-SSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGV 74

Query: 64  TCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL 123
           TC   H RVT LDL S  I G +SP++GN SF+R + + NNS+  EIP ++G L RLE L
Sbjct: 75  TCGLLHRRVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEEL 134

Query: 124 -IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNI-SSLEFQSSETEKSKNRFT 181
            +    +GGKIP ++ +  ++ ++ L +N   G +     + S+L+  S       N+ T
Sbjct: 135 RLNNNSVGGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLS----IFGNKLT 190

Query: 182 GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTG 241
           G +     +L  L RL+L +  +     + L +   LRN + L +L+ N+L+GTIP +  
Sbjct: 191 GSIPHSLGNLSQLQRLSLAENRMVGEVPNSLGW---LRNLTFL-SLRSNRLSGTIPSSLF 246

Query: 242 ELRNLQAPDLSENNLNA 258
            L +++  D+ ENN + 
Sbjct: 247 NLSSIRNLDIGENNFHG 263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570308|ref|XP_002526114.1| receptor-kinase, putative [Ricinus communis] gi|223534611|gb|EEF36308.1| receptor-kinase, putative [Ricinus communis]

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/283 (35%), Positives = 134/283 (47%), Gaps = 65/283 (22%)

Query: 7   FSSVAT--LVWCFSLLLLST--RTHSNKTDHL--LAIKSQL-QDPLGPTSSWKASLNLCQ 59
           FSS AT  L+  F +L LST    H N+TD L  L+ K+Q+  DPL    SW A+ + C 
Sbjct: 6   FSSQATVSLISFFGILCLSTSGEAHGNETDKLALLSFKAQITDDPLELLQSWNATSHFCD 65

Query: 60  WTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR 119
           W GVTC +RH RV KL+L S  + G L   +GN SF+RV+ L NNS  GEIP+E+G L R
Sbjct: 66  WRGVTCGNRHQRVVKLELYSLKLSGSLPHHIGNLSFLRVLDLHNNSLSGEIPSEIGYLRR 125

Query: 120 LETL-------------------------IGGYRLGGKIPESLGQLGSINYLILAENNFS 154
           L+ L                         +GG RL G IP +LG+L  + +  +  N  +
Sbjct: 126 LQVLNLRNNSIVGKIPANISSCSSLLHFNVGGNRLMGDIPSALGKLSKLVFFGVDRNTLT 185

Query: 155 GTLRSIF-NISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD 213
           G++ S F N+SSL+  +    K       +LG          RL           T+ LD
Sbjct: 186 GSIPSSFGNLSSLQVLAIHVNKMNGNIPDELG----------RL-----------TNVLD 224

Query: 214 FITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
           FI           +  N  +G IP     L +L   DLS NN 
Sbjct: 225 FI-----------VHTNNFSGAIPPPIFNLSSLVRMDLSVNNF 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 146/306 (47%), Gaps = 57/306 (18%)

Query: 5   ISFSSVATLVWCFSLLLLSTRTHS------NKTDHL--LAIKSQLQDPLGPTSSWKASLN 56
           +  S +++ ++C  LLL+   + S      N+TD L  LA K+Q+ DPL   SSW AS +
Sbjct: 1   MELSGMSSCIFCPLLLLIIQLSFSFSLHEGNETDRLSLLAFKAQITDPLDALSSWNASTH 60

Query: 57  LCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGC 116
            C+W+GV C HRH R+ +L+L+S  + G LSP +GN SF+RV+ L  N +  +IP E+G 
Sbjct: 61  FCKWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELGR 120

Query: 117 LSRLETLI-------------------------GGYRLGGKIPESLGQLGSINYLILAEN 151
           L RL+ L+                         G   L GKIP  LG L  +   +L  N
Sbjct: 121 LFRLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQGN 180

Query: 152 NFSGTLRSIF-NISSLE--FQSSETEK------------------SKNRFTGKLGIDFNS 190
           N  G + S F N+SS++  F +    +                  ++N  +G +     +
Sbjct: 181 NLVGDIPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLKYFAVAENDLSGTIPSSICN 240

Query: 191 LINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPD 250
           + +LA ++LGQ  L      DL     L N + L  + +N L G IP T      +   D
Sbjct: 241 ISSLAYVSLGQNQLHGSLPPDLGLN--LPNLAYL-VINFNHLNGPIPATLSNASKIFLVD 297

Query: 251 LSENNL 256
           LS NNL
Sbjct: 298 LSYNNL 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571732|ref|XP_002526809.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533813|gb|EEF35544.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  123 bits (309), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/276 (35%), Positives = 137/276 (49%), Gaps = 51/276 (18%)

Query: 29  NKTDHLLAIKSQ---LQDPLGPTSSWKASLNLCQWTGVTCSHRHP-RVTKLDLRSKSIGG 84
           N+TD L  I  +   ++DP G  +SW  S + C W GVTCS RHP R+  L+L S+ + G
Sbjct: 29  NETDRLALISFRELIVRDPFGVLNSWNNSAHFCDWYGVTCSRRHPDRIIALNLTSQGLVG 88

Query: 85  FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL--------------------- 123
            LSP +GN SF+R +   NNS+ G+IP+E+G L RL+ L                     
Sbjct: 89  SLSPHIGNLSFLRYVDFRNNSFRGQIPHEIGRLRRLQCLTLSNNSFCGNIPTNLSYCSNL 148

Query: 124 ----IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSL------EFQSSE 172
               I   +L G IP  LG L  +  L LA+NN +G++  SI N+SSL         SS 
Sbjct: 149 VILNIIDNKLVGSIPAELGSLRKLEALGLAKNNLTGSIPPSIGNLSSLWQLFTGAIPSSL 208

Query: 173 TEKSK--------NRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKL 224
           +  S         N F+G    D   L +L  +++ +  L      DL+FI  L NCS+L
Sbjct: 209 SNASALEQLALYSNGFSGLFPKDLGLLPHLQYVDISENQL----IDDLNFIDSLTNCSRL 264

Query: 225 KTLQY--NQLTGTIPDTTGEL-RNLQAPDLSENNLN 257
           + L    N   GT+P +   L R+L    LS+N L+
Sbjct: 265 EVLDLASNIFQGTLPSSIANLSRDLMYIALSDNQLH 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575908|ref|XP_002528851.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531702|gb|EEF33525.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/252 (36%), Positives = 125/252 (49%), Gaps = 44/252 (17%)

Query: 9   SVATLVWCFSLLLLSTRTHSNKTDHL--LAIKSQL-QDPLGPTSSWKASLNLCQWTGVTC 65
           S A L   F++     R+ +N+TD L  L  K ++  DPLG  SSW +SL+ CQW GVTC
Sbjct: 28  SFAVLPAAFAM-----RSANNETDRLALLEFKDKIADDPLGMMSSWNSSLHFCQWHGVTC 82

Query: 66  SHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-I 124
             RH RVT LDL S  + G +SP+VGN SF+R + L NNS+  +IP + G L RL+ L +
Sbjct: 83  GRRHQRVTMLDLGSLKLSGSISPYVGNLSFLRKLYLENNSFSHDIPPQSGHLRRLQILSL 142

Query: 125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKL 184
                GG+IP ++    ++ YL L                             N+  GK+
Sbjct: 143 YNNSFGGEIPPNISACSNLVYLYL---------------------------DGNKLVGKI 175

Query: 185 GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE 242
                SL+ L     G+ NL IGT         L N S L TL    N+L G +P++ G 
Sbjct: 176 PSQLTSLMKLKEFFFGRNNL-IGTIP-----PSLGNLSSLWTLSGDTNKLHGVLPESLGR 229

Query: 243 LRNLQAPDLSEN 254
           L NL+   L EN
Sbjct: 230 LTNLKYLALFEN 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 148/380 (38%), Gaps = 149/380 (39%)

Query: 26  THSNKTDHL--LAIKSQL-QDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSI 82
           +H N+TD L  LAIK+Q+ QDPLG T+SW  S++ C WTGVTC HRH RV  L+L S  +
Sbjct: 34  SHRNETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHL 93

Query: 83  GGFLSPFVGNPSFV------------------------RVIVLANNSYYGEIPNEVG--- 115
            G LSP +GN +F+                        R + L NNS+ GEIP  +    
Sbjct: 94  VGSLSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCS 153

Query: 116 -----------CLSRLETLIGGY-----------------------------------RL 129
                       + R+ + +G Y                                    L
Sbjct: 154 NLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHL 213

Query: 130 GGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLE--------------------- 167
            G IP++LGQL ++ ++ L  N FSG +  S++N+SSLE                     
Sbjct: 214 EGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTL 273

Query: 168 ------------FQSS------------ETEKSKNRFTGKLGIDFNSLINLARLNLGQKN 203
                       F  S            E + + + FTGK+ IDF  + NL  L L    
Sbjct: 274 PNLQVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNP 333

Query: 204 LGIGTTSDLDFITLLRNCSKLKTLQY---------------------------NQLTGTI 236
           LG G   DL F+  L  C  LK L                             NQL+GTI
Sbjct: 334 LGKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTI 393

Query: 237 PDTTGELRNLQAPDLSENNL 256
           P   G L NL    L+ N+ 
Sbjct: 394 PPGIGNLVNLTDLILANNDF 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818964|ref|XP_002877365.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297323203|gb|EFH53624.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 148/322 (45%), Gaps = 92/322 (28%)

Query: 18  SLLLLSTRTHSNKTDH--LLAIKSQL-QDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTK 74
           +L+LL     +++TD   LL  KSQ+ ++ +   SSW  S  LC WTG+TC  +H RV  
Sbjct: 11  ALMLLDAYGFTDETDMQALLEFKSQISEEKIDVLSSWNHSFPLCSWTGITCGRKHKRVIG 70

Query: 75  LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL----------- 123
           LDL+   + G +SP++GN SF+  + L++NS+ G IP EVG L RL+ L           
Sbjct: 71  LDLKGLQLSGVISPYIGNLSFLIWLNLSDNSFGGTIPQEVGNLFRLKHLDMSFNLLGGGI 130

Query: 124 --------------------------------------IGGYRLGGKIPESLGQLGSIN- 144
                                                 +GG  L GK+P SLG L S+  
Sbjct: 131 QVSLSNCSRLVVLIFDSNHLGGSVPSELGSLRKLVSLYLGGNNLKGKLPASLGNLTSLRE 190

Query: 145 -----------------------YLILAENNFSGTLRS-IFNISSLEFQSSETEKSKNRF 180
                                   L LA NNFSG     I+N+SSL++       S NRF
Sbjct: 191 LHLGFNNIEGRIPDDIARLNQMLVLDLAVNNFSGVFPPLIYNLSSLKY----LYISGNRF 246

Query: 181 TGKLGIDFNSLI-NLARLNLGQKNL-GIGTTSDLDFITLLRNCSKLKTLQYNQ--LTGTI 236
           +  L  DF  L+ NL  LN+GQ +  G+  T+       L N S L+ L  N   LTG+I
Sbjct: 247 SAFLRSDFGKLLPNLVALNMGQNSFTGVIPTT-------LSNISTLQKLAINDNNLTGSI 299

Query: 237 PDTTGELRNLQAPDLSENNLNA 258
           P + G+LRNLQ   L  N+L +
Sbjct: 300 PLSFGKLRNLQWLFLFSNSLGS 321

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242092142|ref|XP_002436561.1| hypothetical protein SORBIDRAFT_10g004760 [Sorghum bicolor] gi|241914784|gb|EER87928.1| hypothetical protein SORBIDRAFT_10g004760 [Sorghum bicolor]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 126/250 (50%), Gaps = 33/250 (13%)

Query: 22  LSTRTHSNKTD----HLLAIKSQLQDPLGP-TSSWKASLNLCQWTGVTCSHRHPRVTKLD 76
           ++  + SN TD     LLA ++QL DPLG    +W    + C W GV+CS R  RVT L 
Sbjct: 25  IAVSSESNGTDTDLDALLAFRAQLSDPLGVLRGNWTPGTSFCNWLGVSCSQRRERVTALV 84

Query: 77  LRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-LGGKIPE 135
           L +  + G +SP++GN SF+ V+ L N++  G IP E+G L RL  L   +  L G IP 
Sbjct: 85  LPNIPLHGSISPYIGNLSFLYVLNLTNSNLTGSIPAELGRLHRLRVLALPWNSLSGYIPA 144

Query: 136 SLGQLGSINYLILAENNFSG----TLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSL 191
           ++G L  +  L+L EN+ SG     L+ + N+  L+ Q       KN  +GK+   FN+ 
Sbjct: 145 TVGNLTRLESLVLLENSLSGLIPHELKDLQNLRRLDLQ-------KNHLSGKIPEVFNNT 197

Query: 192 INLARLNLGQKNL------GIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRN 245
             L+ LNLG  +L      GIG+   L  +           LQ N LTG +P  T     
Sbjct: 198 PYLSYLNLGNNSLWGPIPVGIGSLPMLQIL----------VLQDNHLTGVVPPDTFNNSA 247

Query: 246 LQAPDLSENN 255
           LQ   L  NN
Sbjct: 248 LQVLSLVSNN 257

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.798	0.253	0.364	7.6e-24
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.883	0.225	0.354	1.8e-23
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.918	0.345	0.333	1.1e-22
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.918	0.202	0.347	2.7e-22
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.903	0.230	0.340	7.3e-22
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.852	0.184	0.336	4.1e-21
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.949	0.237	0.288	2.4e-20
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.647	0.162	0.380	3e-20
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.887	0.207	0.319	3.3e-20
TAIR|locus:2118811	648	SARK "SENESCENCE-ASSOCIATED RE	0.600	0.239	0.377	3.6e-20

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 284 (105.0 bits), Expect = 7.6e-24, P = 7.6e-24
 Identities = 83/228 (36%), Positives = 121/228 (53%)

Query:    34 LLAIKSQLQDPLGPT-SSWKASLN--LCQWTGVTCSHRHP-RVTKLDLRSKSIGGFLSPF 89
             LL+ KS L    G + +SW  S +   C W GV C  RHP RV KL LRS ++ G +SP 
Sbjct:    38 LLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGIISPS 97

Query:    90 VGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-LGGKIPESLGQLGSINYLIL 148
             +GN SF+R + L++N   G+IP E+  LSRL+ L+  +  L G+IP +LG L S++ L L
Sbjct:    98 LGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLEL 157

Query:   149 AENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207
               N  SG +  S+  ++ L    ++   ++N  +G +   F  L  L+ L+L   NL  G
Sbjct:   158 TNNTLSGAIPSSLGKLTGL----TDLALAENTLSGSIPSSFGQLRRLSFLSLAFNNLS-G 212

Query:   208 TTSDLDFITLLRNCSKLKTLQY--NQLTGTIPDTTGELRNLQAPDLSE 253
                D      + N S L   +   N+L+GT+P  T    NL  P L E
Sbjct:   213 AIPDP-----IWNISSLTIFEVISNKLSGTLP--TNAFSNL--PSLQE 251

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 85/240 (35%), Positives = 120/240 (50%)

Query:    13 LVWCFSLLL-LSTRTHSNKTDH--LLAIKSQLQDPLGPT-SSWKASLNLCQWTGVTCSHR 68
             L+  F+ L+ L     ++++D   LL IKSQ+ +      S+W  S  LC W  V C  +
Sbjct:     5 LLLAFNALMQLEAYGFTDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRK 64

Query:    69 HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR 128
             H RVT+LDL    +GG +SP +GN SF+  + L+NNS+ G IP E+G L RL+ L  G+ 
Sbjct:    65 HKRVTRLDLGGLQLGGVISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFN 124

Query:   129 -LGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGID 187
              L G+IP SL     + YL L  NN    + S   + SL  +        N   GK  + 
Sbjct:   125 YLEGEIPASLSNCSRLLYLDLFSNNLGDGVPS--ELGSLR-KLLYLYLGLNDLKGKFPVF 181

Query:   188 FNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQ 247
               +L +L  LNLG  +L  G   D D I +L     L TL  N  +G  P     L +L+
Sbjct:   182 IRNLTSLIVLNLGYNHLE-GEIPD-D-IAMLSQMVSL-TLTMNNFSGVFPPAFYNLSSLE 237

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 84/252 (33%), Positives = 130/252 (51%)

Query:    13 LVWCFSLL-LLSTRTHSNKTD-HLLAIKSQLQDPLGPT-SSWKAS-LNLCQWTGVTCSHR 68
             L+ CF L    +  T  N     LL+ K  +Q+      ++W +S  N C W GVTC++ 
Sbjct:     6 LILCFILTHFFAIATSLNDQGLALLSFKQSIQNQSDSVFTNWNSSDSNPCSWQGVTCNY- 64

Query:    69 HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGY 127
               RV  + L +K + G L P +G+   +R I L +N + G++P E+  L  L++L+  G 
Sbjct:    65 DMRVVSIRLPNKRLSGSLDPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGN 124

Query:   128 RLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSET-EKSKNRFTGKLGI 186
                G +PE +G L S+  L L+EN+F+G++    ++S +  +  +T   SKN F+G L  
Sbjct:   125 SFSGFVPEEIGSLKSLMTLDLSENSFNGSI----SLSLIPCKKLKTLVLSKNSFSGDLPT 180

Query:   187 DFNS-LINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRN 245
                S L++L  LNL    L  GT  + D +  L N      L +N  +G IP + G L  
Sbjct:   181 GLGSNLVHLRTLNLSFNRL-TGTIPE-D-VGSLENLKGTLDLSHNFFSGMIPTSLGNLPE 237

Query:   246 LQAPDLSENNLN 257
             L   DLS NNL+
Sbjct:   238 LLYVDLSYNNLS 249

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 88/253 (34%), Positives = 125/253 (49%)

Query:    10 VATLVWCFSLLLLSTRTHSNKTDHLLAIKSQLQ-DPLGPTSSWK--ASLNLCQWTGVTC- 65
             + TL + F  + L+ ++   + + L + K+ +  DPLG  S W    SL  C WTG+TC 
Sbjct:    10 ILTLTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCD 69

Query:    66 SHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIG 125
             S  H  V  + L  K + G LSP + N ++++V+ L +NS+ G+IP E+G L+ L  LI 
Sbjct:    70 STGH--VVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLIL 127

Query:   126 GYR-LGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTGK 183
                   G IP  + +L +I YL L  N  SG +   I   SSL     +     N  TGK
Sbjct:   128 YLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDY----NNLTGK 183

Query:   184 LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGEL 243
             +      L++L        +L   T S    I  L N + L  L  NQLTG IP   G L
Sbjct:   184 IPECLGDLVHLQMFVAAGNHL---TGSIPVSIGTLANLTDLD-LSGNQLTGKIPRDFGNL 239

Query:   244 RNLQAPDLSENNL 256
              NLQ+  L+EN L
Sbjct:   240 LNLQSLVLTENLL 252

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 7.3e-22, P = 7.3e-22
 Identities = 83/244 (34%), Positives = 116/244 (47%)

Query:    18 SLLLLSTRTHSNKTDH--LLAIKSQL-QDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTK 74
             +L+LL T   +++TD   LL  KSQ+ +D     SSW  S  LC W GVTC  ++ RVT 
Sbjct:    11 ALMLLETHGFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTH 70

Query:    75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-LGGKI 133
             L+L    +GG +SP +GN SF+  + L  N + G IP EVG LSRLE L  G   L G I
Sbjct:    71 LELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPI 130

Query:   134 PESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLIN 193
             P  L     +  L L  N   G++ S   + SL     +     N   GKL     +L  
Sbjct:   131 PLGLYNCSRLLNLRLDSNRLGGSVPS--ELGSLT-NLVQLNLYGNNMRGKLPTSLGNLTL 187

Query:   194 LARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSE 253
             L +L L   NL     SD+  +T + +      L  N  +G  P     L +L+   +  
Sbjct:   188 LEQLALSHNNLEGEIPSDVAQLTQIWSLQ----LVANNFSGVFPPALYNLSSLKLLGIGY 243

Query:   254 NNLN 257
             N+ +
Sbjct:   244 NHFS 247

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 4.1e-21, P = 4.1e-21
 Identities = 78/232 (33%), Positives = 121/232 (52%)

Query:    28 SNKTDHLLAIKSQLQDPLGPTSSWKASLNL--CQWTGVTCSHRHPRVTKLDLRSKSIGGF 85
             S++T  L++ K  L++P    SSW  S +   C W GVTC     RV  L L S S+ G 
Sbjct:    24 SSETTSLISFKRSLENP-SLLSSWNVSSSASHCDWVGVTCLLG--RVNSLSLPSLSLRGQ 80

Query:    86 LSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSIN 144
             +   + +   +R + LA N + G+IP E+  L  L+TL + G  L G +P  L +L  + 
Sbjct:    81 IPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLL 140

Query:   145 YLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL 204
             YL L++N+FSG+L   F IS L   SS  + S N  +G++  +   L NL+ L +G  + 
Sbjct:   141 YLDLSDNHFSGSLPPSFFIS-LPALSS-LDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSF 198

Query:   205 GIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
                  S++  I+LL+N +      +N   G +P    +L++L   DLS N L
Sbjct:   199 SGQIPSEIGNISLLKNFAAPSCF-FN---GPLPKEISKLKHLAKLDLSYNPL 246

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 75/260 (28%), Positives = 123/260 (47%)

Query:     5 ISFSSVAT-LVWCFSLLLLSTRTHSNKTDH--LLAIKSQLQD--PLGPTSSWKASLNLCQ 59
             +SFS V   L     + + +    SN+TD   LL  KSQ+ +       +SW  S   C 
Sbjct:     3 LSFSLVFNALTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCN 62

Query:    60 WTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR 119
             W GVTC  R  RV  L+L    + G +SP +GN SF+R++ LA+NS+   IP +VG L R
Sbjct:    63 WIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFR 122

Query:   120 LETLIGGYRL-GGKIPESLGQLGSINYLILAENNFS-GTLRSIFNISSLEFQSSETEKSK 177
             L+ L   Y L  G+IP SL     ++ + L+ N+   G    + ++S L       + SK
Sbjct:   123 LQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAI----LDLSK 178

Query:   178 NRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIP 237
             N  TG       +L +L +L+     +      ++  +T +        +  N  +G  P
Sbjct:   179 NNLTGNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQM----VFFQIALNSFSGGFP 234

Query:   238 DTTGELRNLQAPDLSENNLN 257
                  + +L++  L++N+ +
Sbjct:   235 PALYNISSLESLSLADNSFS 254

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 3.0e-20, P = 3.0e-20
 Identities = 67/176 (38%), Positives = 93/176 (52%)

Query:    28 SNKTDH--LLAIKSQLQDPLGPT-SSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGG 84
             + +TD   LL  KSQ+ +       SW  SL LC WTGV C  +H RVT +DL    + G
Sbjct:    36 TEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTG 95

Query:    85 FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSI 143
              +SPFVGN SF+R + LA+N ++G IP+EVG L RL+ L +     GG IP  L    S+
Sbjct:    96 VVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSL 155

Query:   144 NYLILAENNFS-GTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLN 198
             + L L+ N+   G      ++S L   S      +N  TGK      +L +L  L+
Sbjct:   156 STLDLSSNHLEQGVPLEFGSLSKLVLLSL----GRNNLTGKFPASLGNLTSLQMLD 207

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 79/247 (31%), Positives = 119/247 (48%)

Query:    19 LLLLSTRTHSN-KTDHLLAIKSQLQDPLGPTSSWKASLNL-CQWTGVTCSH--RHPRVTK 74
             +LL+S  T  N +  +LL IKS+  D      +W ++ ++ C WTGV CS+    P V  
Sbjct:    18 ILLISETTGLNLEGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLS 77

Query:    75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
             L+L S  + G LSP +G    ++ + L+ N   G+IP E+G  S LE L +   +  G+I
Sbjct:    78 LNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEI 137

Query:   134 PESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLI 192
             P  +G+L S+  LI+  N  SG+L   I N+ SL    S+     N  +G+L     +L 
Sbjct:   138 PVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSL----SQLVTYSNNISGQLPRSIGNLK 193

Query:   193 NLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPD 250
              L     GQ  +     S++        C  L  L    NQL+G +P   G L+ L    
Sbjct:   194 RLTSFRAGQNMISGSLPSEIG------GCESLVMLGLAQNQLSGELPKEIGMLKKLSQVI 247

Query:   251 LSENNLN 257
             L EN  +
Sbjct:   248 LWENEFS 254

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2118811 SARK "SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.6e-20, P = 3.6e-20
 Identities = 60/159 (37%), Positives = 91/159 (57%)

Query:    13 LVWCFSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSW-KASLNLCQWTGVTCSHRHPR 71
             L  CFS L LS+   + + + L++I++ L DP G  ++W + S++ C W  +TCS  +  
Sbjct:    20 LFLCFSTLTLSSEPRNPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITCSPDN-L 78

Query:    72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLG 130
             V  L   S+S+ G LS  +GN + +R + L NN+  G+IP E+G L +L+TL +   R  
Sbjct:    79 VIGLGAPSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLSNNRFS 138

Query:   131 GKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEF 168
             G IP S+ QL S+ YL L  N+ SG    S+  I  L F
Sbjct:   139 GDIPVSIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSF 177

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010150 "leaf senescence" evidence=IMP

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-06

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 4e-27
 Identities = 78/262 (29%), Positives = 125/262 (47%), Gaps = 52/262 (19%)

Query: 17  FSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLD 76
           F L L  +  H+ + + LL+ KS + DPL   S+W +S ++C W G+TC++   RV  +D
Sbjct: 17  FFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSID 75

Query: 77  LRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPES 136
           L  K+I G +S  +    +++ I L+NN   G IP+++   S                  
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS------------------ 117

Query: 137 LGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINL 194
                S+ YL L+ NNF+G++   SI N+ +L+        S N  +G++  D  S  +L
Sbjct: 118 ----SSLRYLNLSNNNFTGSIPRGSIPNLETLDL-------SNNMLSGEIPNDIGSFSSL 166

Query: 195 ARLNLGQKNL------GIGTTSDLDFITLLRN---------CSKLKTLQ-----YNQLTG 234
             L+LG   L       +   + L+F+TL  N           ++K+L+     YN L+G
Sbjct: 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 235 TIPDTTGELRNLQAPDLSENNL 256
            IP   G L +L   DL  NNL
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNL 248

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.9 bits (184), Expect = 3e-15
 Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 26/204 (12%)

Query: 75  LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-LGGKI 133
           LDL    + G +   + N + +  + LA+N   G+IP E+G +  L+ +  GY  L G+I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 134 PESLGQLGSINYLILAENNFSGTLRSIF-NISSLEFQSSETEKSKNRFTGKLGIDFNSLI 192
           P  +G L S+N+L L  NN +G + S   N+ +L++        +N+ +G +     SL 
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL----YQNKLSGPIPPSIFSLQ 284

Query: 193 NLARLNLGQKNLG------IGTTSDLDFITLLRN----------CS--KLKTLQY--NQL 232
            L  L+L   +L       +    +L+ + L  N           S  +L+ LQ   N+ 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 233 TGTIPDTTGELRNLQAPDLSENNL 256
           +G IP   G+  NL   DLS NNL
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 3e-12
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 13/190 (6%)

Query: 71  RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRL 129
            + KL L S S+ G +   +G    +R + L +NS+ GE+P+E   L  +  L I    L
Sbjct: 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440

Query: 130 GGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFN 189
            G+I      + S+  L LA N F G L   F    LE      + S+N+F+G +     
Sbjct: 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLE----NLDLSRNQFSGAVPRKLG 496

Query: 190 SLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQ 247
           SL  L +L L +  L      +L       +C KL +L   +NQL+G IP +  E+  L 
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELS------SCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550

Query: 248 APDLSENNLN 257
             DLS+N L+
Sbjct: 551 QLDLSQNQLS 560

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 20/166 (12%)

Query: 17  FSLLLLSTRTHSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQ---WTGVTC----SHRH 69
           F ++   ++T   +   L  +KS L  PL     W     + Q   W+G  C    +   
Sbjct: 360 FEIITAESKTLLEEVSALQTLKSSLGLPL--RFGWNGDPCVPQQHPWSGADCQFDSTKGK 417

Query: 70  PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGY-R 128
             +  L L ++ + GF+   +     ++ I L+ NS  G IP  +G ++ LE L   Y  
Sbjct: 418 WFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 129 LGGKIPESLGQLGSINYLILAENNFSGTL----------RSIFNIS 164
             G IPESLGQL S+  L L  N+ SG +          R+ FN +
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 15/194 (7%)

Query: 68  RHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGG 126
           +H  +T LDL + ++ G +   + +   +  ++L +NS  GEIP  +G    L  + +  
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 127 YRLGGKIPESLGQLGSINYLILAENNFSGTLRS-IFNISSLEFQSSETEKSKNRFTGKLG 185
               G++P    +L  + +L ++ NN  G + S  +++ SL+  S     ++N+F G L 
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL----ARNKFFGGLP 469

Query: 186 IDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQY--NQLTGTIPDTTGEL 243
             F S   L  L+L + N   G          L + S+L  L+   N+L+G IPD     
Sbjct: 470 DSFGS-KRLENLDLSR-NQFSGAVP-----RKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 244 RNLQAPDLSENNLN 257
           + L + DLS N L+
Sbjct: 523 KKLVSLDLSHNQLS 536

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 47/226 (20%)

Query: 75  LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
           LDL   S+ G +   V     + ++ L +N++ G+IP  +  L RL+ L +   +  G+I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 134 PESLGQLGSINYLILAENNFSGTL-----------RSIFNISSLEFQSSETEKS------ 176
           P++LG+  ++  L L+ NN +G +           + I   +SLE    E  KS      
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE---GEIPKSLGACRS 405

Query: 177 -------KNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTS------DLDFITLLRN--- 220
                   N F+G+L  +F  L  +  L++   NL     S       L  ++L RN   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 221 --------CSKLKT--LQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
                     +L+   L  NQ +G +P   G L  L    LSEN L
Sbjct: 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 27 HSNKTDHLLAIKSQLQ-DPLGPTSSWKASL-NLCQWTGVTCS 66
           ++  D LLA KS L  DP G  SSW  S  + C WTGVTC 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN03150	623	hypothetical protein; Provisional	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.64
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.62
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.52
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.47
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.46
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.45
PLN03150	623	hypothetical protein; Provisional	99.45
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.43
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.42
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.42
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.95
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.84
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.69
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.61
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.59
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.3
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.29
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.05
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.76
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.73
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.35
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.3
PRK15386	426	type III secretion protein GogB; Provisional	97.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.9
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.65
PRK15386	426	type III secretion protein GogB; Provisional	96.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.33
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.74
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.42
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.9
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.77
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.52
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.08
smart00370	26	LRR Leucine-rich repeats, outliers.	90.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.62
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.07
KOG4308	478	consensus LRR-containing protein [Function unknown	80.32

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.7e-33  Score=275.93  Aligned_cols=225  Identities=32%  Similarity=0.528  Sum_probs=156.6

Q ss_pred             CCChHHHHHHHHHhCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCC
Q 039201           27 HSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSY  106 (258)
Q Consensus        27 ~~~~~~aL~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l  106 (258)
                      .+.+.+||++||+++.+|...+.+|....+||.|.||+|+.. ++|+.|+++++++.|.+++.+..+++|++|++++|.+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~  105 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL  105 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence            345556999999999888777899988889999999999864 4999999999999999999999999999999999999


Q ss_pred             cCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccc
Q 039201          107 YGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGK  183 (258)
Q Consensus       107 ~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~  183 (258)
                      .|.+|..+. ++++|++|+ ++|+++|.+|.  +.+++|++|++++|.+++.+| .++++++|++    |++++|.+.+.
T Consensus       106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~----L~L~~n~l~~~  179 (968)
T PLN00113        106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV----LDLGGNVLVGK  179 (968)
T ss_pred             CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE----EECccCccccc
Confidence            999997765 788888888 66666665553  345555555555555555555 5555555555    55555555555


Q ss_pred             cCccccCCCCCCeEecCCCcCCccCCCCc------------------hhhhhhcCCCCCccc--cccccccccchhhcCC
Q 039201          184 LGIDFNSLINLARLNLGQKNLGIGTTSDL------------------DFITLLRNCSKLKTL--QYNQLTGTIPDTTGEL  243 (258)
Q Consensus       184 ip~~~~~l~~L~~L~ls~N~l~g~~p~~~------------------~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l  243 (258)
                      +|..++++++|++|++++|.+.+.+|..+                  ..|..++++++|++|  ++|+++|.+|..++.+
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            55555555555555555555544422110                  134455666666665  6666666666666666


Q ss_pred             CCCCeEeccCCcCCC
Q 039201          244 RNLQAPDLSENNLNA  258 (258)
Q Consensus       244 ~~L~~L~Ls~N~l~G  258 (258)
                      ++|++|++++|+++|
T Consensus       260 ~~L~~L~L~~n~l~~  274 (968)
T PLN00113        260 KNLQYLFLYQNKLSG  274 (968)
T ss_pred             CCCCEEECcCCeeec
Confidence            667777766666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=2.3e-24  Score=212.65  Aligned_cols=183  Identities=31%  Similarity=0.428  Sum_probs=111.3

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|+ ++|.+.+.+|..++++++|++|+++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            456666666666666666667777777777777777666776667777777776 5666666666666666777777777


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc----------------
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL----------------  212 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~----------------  212 (258)
                      +|++++.+| .++++++|++    |++++|++++.+|..++++++|++|++++|.+++.+|..+                
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~----L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNH----LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             CCccCCcCChhHhcCCCCCE----EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            776666666 6666666666    6666666666666666666666666666666665533211                


Q ss_pred             --hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          213 --DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       213 --~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                        ..|..+.++++|++|  ++|.++|.+|..+..+++|+.|++++|+++
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  345 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS  345 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc
Confidence              022333344444444  444444444444444555555555555443

>PLN03150 hypothetical protein; Provisional

Probab=99.76  E-value=4.2e-18  Score=160.32  Aligned_cols=150  Identities=28%  Similarity=0.431  Sum_probs=123.9

Q ss_pred             CChHHHHHHHHHhCCCCCCCCCCCCCCCCCc-----cccceeeCCCC----CcEEEEEcCCCCCcccCCccCCCCCCCCE
Q 039201           28 SNKTDHLLAIKSQLQDPLGPTSSWKASLNLC-----QWTGVTCSHRH----PRVTKLDLRSKSIGGFLSPFVGNPSFVRV   98 (258)
Q Consensus        28 ~~~~~aL~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~~----~~v~~l~l~~~~l~g~lp~~~~~l~~L~~   98 (258)
                      ..+.+||+++|+.+.++..  .+|..  ++|     .|.||.|....    ..|+.|+|+++++.|.+|+.++.+++|++
T Consensus       371 ~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~  446 (623)
T PLN03150        371 LEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS  446 (623)
T ss_pred             chHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence            3445599999999966532  47864  344     79999996321    25899999999999999999999999999


Q ss_pred             EEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCC-CCcceecceeec
Q 039201           99 IVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNI-SSLEFQSSETEK  175 (258)
Q Consensus        99 L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l-~~L~~l~l~L~l  175 (258)
                      |+|++|.+.|.+|..++++++|++|+ ++|+++|.+|+.++++++|++|+|++|+++|.+| .++.. .++..    +++
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~----l~~  522 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS----FNF  522 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce----EEe
Confidence            99999999999999999999999999 8899999999999999999999999999999999 77653 45566    778


Q ss_pred             CCCccccccC
Q 039201          176 SKNRFTGKLG  185 (258)
Q Consensus       176 ~~n~~~g~ip  185 (258)
                      .+|......|
T Consensus       523 ~~N~~lc~~p  532 (623)
T PLN03150        523 TDNAGLCGIP  532 (623)
T ss_pred             cCCccccCCC
Confidence            8887554444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.76  E-value=1.7e-20  Score=144.75  Aligned_cols=157  Identities=27%  Similarity=0.428  Sum_probs=142.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+.+++|.++ .+|+.|+.+.+|++|++++|+++ ++|.+++.+++|+.|+ +-|.+. .+|..|+.++-|+.|||.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            7899999999997 67888999999999999999998 8999999999999999 667666 689999999999999999


Q ss_pred             ccccc-cccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          150 ENNFS-GTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       150 ~n~l~-g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      +|++. ..+| .+..++.|+.    +++++|.|. .+|..++++++|+.|.+..|.+-.       .|.+++.+++|+.|
T Consensus       111 ynnl~e~~lpgnff~m~tlra----lyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-------lpkeig~lt~lrel  178 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRA----LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-------LPKEIGDLTRLREL  178 (264)
T ss_pred             ccccccccCCcchhHHHHHHH----HHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-------CcHHHHHHHHHHHH
Confidence            99997 4778 8888999999    999999997 889999999999999999998754       78999999999988


Q ss_pred             --cccccccccchhhcCC
Q 039201          228 --QYNQLTGTIPDTTGEL  243 (258)
Q Consensus       228 --~~N~l~g~ip~~l~~l  243 (258)
                        ++|+++ .+|++++.+
T Consensus       179 hiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELANL  195 (264)
T ss_pred             hcccceee-ecChhhhhh
Confidence              999999 889888765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=2.1e-19  Score=138.80  Aligned_cols=154  Identities=23%  Similarity=0.322  Sum_probs=138.2

Q ss_pred             CCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201           90 VGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF  168 (258)
Q Consensus        90 ~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~  168 (258)
                      +.++.+++.|.||.|+++ .+|+.+..+.+|+.|+-.|+-..++|.++..+++|+.|+++.|++. .+| .++.++.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            567888999999999998 7888999999999999444444489999999999999999999997 788 9999999999


Q ss_pred             ecceeecCCCccc-cccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201          169 QSSETEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN  245 (258)
Q Consensus       169 l~l~L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~  245 (258)
                          +|+.+|++. ..+|-.+..++.|+.|++++|.|+-       +|+.++++++|+.|  .+|.+- ++|.+++.+.+
T Consensus       107 ----ldltynnl~e~~lpgnff~m~tlralyl~dndfe~-------lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen  107 ----LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-------LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             ----hhccccccccccCCcchhHHHHHHHHHhcCCCccc-------CChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence                999999886 4578889999999999999999986       68899999999988  778777 89999999999


Q ss_pred             CCeEeccCCcCC
Q 039201          246 LQAPDLSENNLN  257 (258)
Q Consensus       246 L~~L~Ls~N~l~  257 (258)
                      |+.|.+.+|+++
T Consensus       175 lrelhiqgnrl~  186 (264)
T KOG0617|consen  175 LRELHIQGNRLT  186 (264)
T ss_pred             HHHHhcccceee
Confidence            999999999875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=2.5e-18  Score=155.13  Aligned_cols=176  Identities=23%  Similarity=0.286  Sum_probs=124.7

Q ss_pred             cEEEEEcCCCCCcccCC-ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCC---------------------
Q 039201           71 RVTKLDLRSKSIGGFLS-PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGY---------------------  127 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp-~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n---------------------  127 (258)
                      +...|+|++|++. +|| +-+.+++.|-.||||+|.+. .+|+.+..+..|++|+ ++|                     
T Consensus       127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            4556677777665 444 34567777777777777776 5677666666666665 222                     


Q ss_pred             ----ccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce-------------------eecCCCccccc
Q 039201          128 ----RLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE-------------------TEKSKNRFTGK  183 (258)
Q Consensus       128 ----~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~-------------------L~l~~n~~~g~  183 (258)
                          .-...+|.++..|.+|+.+|+|.|++. .+| .+.++++|+.|+++                   |+++.|+++ .
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~  282 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-V  282 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-c
Confidence                112357778888888888888888876 667 77778888886554                   777777776 6


Q ss_pred             cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201          184 LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       184 ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      +|+.+.++++|+.|++.+|+++-.     .+|..++++..|+.+  ++|.+. -+|+.+..+.+|+.|.|++|+|
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~Fe-----GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFE-----GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCccccc-----CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence            777788888888888877764322     167778888877777  667776 7888888888888888888875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.65  E-value=2.3e-17  Score=147.84  Aligned_cols=101  Identities=25%  Similarity=0.253  Sum_probs=72.1

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      +|++.|+|.+|.++..-.+++..++.|++||||.|.++ ++| +.+..-.++++|+ ++|.++..=-..|.++.+|.+|.
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence            47899999998887666678888889999999998887 555 4555666788887 66666543345566667777777


Q ss_pred             ccccccccccc--cccCCCCcceecce
Q 039201          148 LAENNFSGTLR--SIFNISSLEFQSSE  172 (258)
Q Consensus       148 L~~n~l~g~~p--~~~~l~~L~~l~l~  172 (258)
                      |+.|+++ .+|  .|.++++|+.|++.
T Consensus       204 LsrNrit-tLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  204 LSRNRIT-TLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             cccCccc-ccCHHHhhhcchhhhhhcc
Confidence            7777776 444  55567777766554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.64  E-value=6.9e-17  Score=144.78  Aligned_cols=176  Identities=21%  Similarity=0.204  Sum_probs=119.6

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCcc------------------
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRL------------------  129 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l------------------  129 (258)
                      .++++|+|++|.++..--..|..+..|.+|.|+.|+++ .+| ..|.++++|+.|+ .+|.+                  
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence            36788888888887544557788888888888888888 555 5567788888887 33332                  


Q ss_pred             ------CCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201          130 ------GGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK  202 (258)
Q Consensus       130 ------~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N  202 (258)
                            ..--...|..|.++++|+|+.|+++..-. ++.++++|+.    |++++|.+...-+.+|...++|++|+|++|
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~----L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ----LDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh----hccchhhhheeecchhhhcccceeEecccc
Confidence                  21111235677888999999998885545 7888999999    999999999888889999999999999999


Q ss_pred             cCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201          203 NLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       203 ~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      .++.-.+      ..+..+..|+.|  ++|.++----..|..+++|+.|||++|.+
T Consensus       328 ~i~~l~~------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  328 RITRLDE------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             ccccCCh------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            9987433      233333333333  44444422222333444444444444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.62  E-value=1.3e-16  Score=137.55  Aligned_cols=178  Identities=24%  Similarity=0.327  Sum_probs=116.9

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc-------------------
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL-------------------  129 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l-------------------  129 (258)
                      +++..+|++.|.+. ++|.++..+++|++||+|+|.++ .+|.+++++ .|+.|. .+|-+                   
T Consensus       252 ~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             ccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            47899999999997 78999999999999999999998 588889998 777764 11100                   


Q ss_pred             ---------------------------------------------CCCCCcccCCCCC---CCEEEcccccc--------
Q 039201          130 ---------------------------------------------GGKIPESLGQLGS---INYLILAENNF--------  153 (258)
Q Consensus       130 ---------------------------------------------~g~ip~~~~~l~~---L~~L~L~~n~l--------  153 (258)
                                                                   ...+|+++..-.+   ...++++.|++        
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~  408 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV  408 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence                                                         0012222111111   22333333322        


Q ss_pred             ---------------ccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc-----
Q 039201          154 ---------------SGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL-----  212 (258)
Q Consensus       154 ---------------~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~-----  212 (258)
                                     .+.+| .+..+++|..    +++++|-+. .+|..++.+..|+.|+++.|.|.- +|...     
T Consensus       409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~----L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~  482 (565)
T KOG0472|consen  409 ELKELVTDLVLSNNKISFVPLELSQLQKLTF----LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQT  482 (565)
T ss_pred             HHHHHHHHHHhhcCccccchHHHHhhhccee----eecccchhh-hcchhhhhhhhhheeccccccccc-chHHHhhHHH
Confidence                           12334 4455556666    666665554 566666666666666666665542 22111     


Q ss_pred             ------------h-hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          213 ------------D-FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       213 ------------~-~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                                  . -+..+++|.+|..|  .+|.+. .||+.++++++|++|++++|.|.
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                        0 23458888888887  788887 89999999999999999999885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.62  E-value=2.5e-17  Score=148.84  Aligned_cols=173  Identities=24%  Similarity=0.333  Sum_probs=148.9

Q ss_pred             CcEEEEEcCCCCCc-ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201           70 PRVTKLDLRSKSIG-GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        70 ~~v~~l~l~~~~l~-g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      +-|+.+|+++|.++ +.+|..+..++.++-|.|...++. .+|.+++.+.+|++|. ..|++. .+-.++..++.|+.++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            46899999999998 678999999999999999998887 8999999999999998 777776 4556788899999999


Q ss_pred             ccccccc-cccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc
Q 039201          148 LAENNFS-GTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK  225 (258)
Q Consensus       148 L~~n~l~-g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~  225 (258)
                      +..|++. ..|| ++..+..|..    +||+.|++. ++|..+..-+++-+|+||+|++.. ||.     +.+.+++.|-
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~----lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Iet-IPn-----~lfinLtDLL  153 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTI----LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIET-IPN-----SLFINLTDLL  153 (1255)
T ss_pred             hhccccccCCCCchhccccccee----eecchhhhh-hcchhhhhhcCcEEEEcccCcccc-CCc-----hHHHhhHhHh
Confidence            9999997 3677 9999999999    999999998 889999999999999999999975 332     3355666655


Q ss_pred             cc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201          226 TL--QYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       226 ~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      +|  ++|++. .+|+.+..+.+||+|+|++|.|
T Consensus       154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             hhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            55  899998 8999999999999999999976

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.57  E-value=2.9e-17  Score=141.46  Aligned_cols=168  Identities=24%  Similarity=0.264  Sum_probs=143.3

Q ss_pred             EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      +..++..+|+++ .+|+.+.++.++..+++.+|++. .+|+..-+++.|++||...++-+.+|++++.|.+|+.|||..|
T Consensus       139 l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  139 LEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc
Confidence            555666677776 67888888889999999999888 5665565699999999777777899999999999999999999


Q ss_pred             ccccccccccCCCCcceecceeecCCCccccccCcccc-CCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201          152 NFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFN-SLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q  228 (258)
Q Consensus       152 ~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~  228 (258)
                      ++. .+|+|..+..|.+    ++++.|++. .+|+... +++++.+||+..|+++.       .|.++..+.+|++|  +
T Consensus       217 ki~-~lPef~gcs~L~E----lh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-------~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  217 KIR-FLPEFPGCSLLKE----LHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-------VPDEICLLRSLERLDLS  283 (565)
T ss_pred             ccc-cCCCCCccHHHHH----HHhcccHHH-hhHHHHhcccccceeeecccccccc-------CchHHHHhhhhhhhccc
Confidence            997 7889999999999    888999887 7788776 88999999999999987       68888888888888  8


Q ss_pred             ccccccccchhhcCCCCCCeEeccCCcC
Q 039201          229 YNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      +|.++ .+|.+++++ .|+.|-+.+|.+
T Consensus       284 NN~is-~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  284 NNDIS-SLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             CCccc-cCCcccccc-eeeehhhcCCch
Confidence            99998 788899999 899999998876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.52  E-value=1.2e-13  Score=131.63  Aligned_cols=115  Identities=20%  Similarity=0.307  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201           72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE  150 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~  150 (258)
                      .+.+++++++++ .+|..+.  +.|+.|++++|.++ .+|..+.  ++|++|+ ++|+++ .+|..+.  ++|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            556777776665 3555442  45777777777776 4665443  3666666 555554 4554332  2455555555


Q ss_pred             cccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201          151 NNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       151 n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      |++. .+| .+.  ++|+.    |++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       251 N~L~-~LP~~l~--s~L~~----L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        251 NRIT-ELPERLP--SALQS----LDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CccC-cCChhHh--CCCCE----EECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            5554 444 332  24444    444555544 3444332  24445555544444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=8.6e-14  Score=132.35  Aligned_cols=100  Identities=24%  Similarity=0.245  Sum_probs=65.7

Q ss_pred             CCCCEEEccccccccccc-cccCC-----------------CCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201          141 GSINYLILAENNFSGTLR-SIFNI-----------------SSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK  202 (258)
Q Consensus       141 ~~L~~L~L~~n~l~g~~p-~~~~l-----------------~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N  202 (258)
                      .+|++|++++|++++ +| ...++                 .+|+.    |++++|+++ .+|..   .++|+.|++++|
T Consensus       342 ~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~----LdLs~N~Lt-~LP~l---~s~L~~LdLS~N  412 (788)
T PRK15387        342 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKE----LIVSGNRLT-SLPVL---PSELKELMVSGN  412 (788)
T ss_pred             cccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccce----EEecCCccc-CCCCc---ccCCCEEEccCC
Confidence            367777777777773 44 21111                 23445    666667666 35542   246777777777


Q ss_pred             cCCccCCCCchhhhhhcCCCCCccccccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          203 NLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       203 ~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      .+++ +|      ....++..| ++++|+++ .+|..++.+++|+.|+|++|+|+|
T Consensus       413 ~Lss-IP------~l~~~L~~L-~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        413 RLTS-LP------MLPSGLLSL-SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             cCCC-CC------cchhhhhhh-hhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            7765 33      222222222 34899998 899999999999999999999986

>PLN03210 Resistant to P

Probab=99.50  E-value=2.1e-13  Score=136.90  Aligned_cols=175  Identities=17%  Similarity=0.177  Sum_probs=95.5

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.++++++...+.+|. +..+++|++|++++|.....+|..++++++|++|+ .++...+.+|..+ ++++|++|+++
T Consensus       635 ~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls  712 (1153)
T PLN03210        635 GLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS  712 (1153)
T ss_pred             CCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence            455555555443334442 55556666666666554455666666666666666 3333334455433 34444444444


Q ss_pred             cccccc--------------------ccc-cccCC-------------------------------CCcceecceeecCC
Q 039201          150 ENNFSG--------------------TLR-SIFNI-------------------------------SSLEFQSSETEKSK  177 (258)
Q Consensus       150 ~n~l~g--------------------~~p-~~~~l-------------------------------~~L~~l~l~L~l~~  177 (258)
                      +|...+                    .+| .+ .+                               ++|+.    |++++
T Consensus       713 gc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~----L~Ls~  787 (1153)
T PLN03210        713 GCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR----LFLSD  787 (1153)
T ss_pred             CCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchh----eeCCC
Confidence            432211                    122 11 11                               23344    56666


Q ss_pred             CccccccCccccCCCCCCeEecCCCcCCccCCCCchhhh----hhcCC----------CCCccc--cccccccccchhhc
Q 039201          178 NRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT----LLRNC----------SKLKTL--QYNQLTGTIPDTTG  241 (258)
Q Consensus       178 n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~----~l~~l----------~~L~~L--~~N~l~g~ip~~l~  241 (258)
                      |...+.+|.+++++++|+.|++++|..-+.+|.....+.    .+.++          ++|+.|  ++|.++ .+|.++.
T Consensus       788 n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~  866 (1153)
T PLN03210        788 IPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIE  866 (1153)
T ss_pred             CCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHh
Confidence            666667888888888888888887765445554321100    01111          123333  667776 6788888


Q ss_pred             CCCCCCeEeccC
Q 039201          242 ELRNLQAPDLSE  253 (258)
Q Consensus       242 ~l~~L~~L~Ls~  253 (258)
                      .+++|++|++++
T Consensus       867 ~l~~L~~L~L~~  878 (1153)
T PLN03210        867 KFSNLSFLDMNG  878 (1153)
T ss_pred             cCCCCCEEECCC
Confidence            888888888876

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=3.8e-15  Score=128.20  Aligned_cols=83  Identities=20%  Similarity=0.341  Sum_probs=62.6

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc--CCCccCCCCCc-ccCCCCCCCEEE
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI--GGYRLGGKIPE-SLGQLGSINYLI  147 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~--~~n~l~g~ip~-~~~~l~~L~~L~  147 (258)
                      ..+.|+|..|+++...|.+|..+++||.||||.|+++-.-|..|..+++|.+|.  ++|+++ .+|. .|++|..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            688999999999876667999999999999999999977788899999887775  657776 3443 344555444444


Q ss_pred             ccccccc
Q 039201          148 LAENNFS  154 (258)
Q Consensus       148 L~~n~l~  154 (258)
                      +.-|++.
T Consensus       147 lNan~i~  153 (498)
T KOG4237|consen  147 LNANHIN  153 (498)
T ss_pred             cChhhhc
Confidence            4444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.47  E-value=8.5e-15  Score=126.97  Aligned_cols=182  Identities=25%  Similarity=0.299  Sum_probs=132.0

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCC---CCEEEccCCCCcC----CCCcccCCC-CCCcEEc-CCCccCCC----CCcc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSF---VRVIVLANNSYYG----EIPNEVGCL-SRLETLI-GGYRLGGK----IPES  136 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~---L~~L~Ls~n~l~g----~~p~~l~~l-~~L~~L~-~~n~l~g~----ip~~  136 (258)
                      ++++.++++++.+.+..+..+..+..   |++|++++|.+.+    .+...+..+ ++|+.|+ ++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            48999999999998666665555555   9999999999873    233445566 8899999 77887743    3345


Q ss_pred             cCCCCCCCEEEccccccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCcc
Q 039201          137 LGQLGSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      +..+++|++|++++|.+++.    ++ .+..+++|++    +++++|.+.+.    ++..+..+++|++|++++|.+++.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~----L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV----LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCE----EeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            67788999999999999842    33 4556679999    99999988643    445567788999999999998863


Q ss_pred             CCCCchhhhhhc-CCCCCccc--cccccc----cccchhhcCCCCCCeEeccCCcCC
Q 039201          208 TTSDLDFITLLR-NCSKLKTL--QYNQLT----GTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       208 ~p~~~~~~~~l~-~l~~L~~L--~~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ....  +...+. ..+.|+.|  ++|.++    +.+...+..+++|+++++++|.++
T Consensus       237 ~~~~--l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         237 GAAA--LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHH--HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            1100  111111 13566666  788887    245566777789999999999886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.46  E-value=3.4e-15  Score=139.81  Aligned_cols=169  Identities=27%  Similarity=0.379  Sum_probs=107.2

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .++.++++.+++++ +|+.++.+.+|+.++...|++. .+|..+...++|++|+ ..|.+. .+|+...+++.|++|+|.
T Consensus       242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence            45666666666653 4566777777777777777663 4555555555555555 333333 455555556666666666


Q ss_pred             ccccccccc---------------------------------------------------cccCCCCcceecceeecCCC
Q 039201          150 ENNFSGTLR---------------------------------------------------SIFNISSLEFQSSETEKSKN  178 (258)
Q Consensus       150 ~n~l~g~~p---------------------------------------------------~~~~l~~L~~l~l~L~l~~n  178 (258)
                      .|++. .+|                                                   .+-++.+|+.    |+|++|
T Consensus       319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV----LhLsyN  393 (1081)
T KOG0618|consen  319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV----LHLSYN  393 (1081)
T ss_pred             hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee----eeeccc
Confidence            66554 222                                                   2333334444    677777


Q ss_pred             ccccccCc-cccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201          179 RFTGKLGI-DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       179 ~~~g~ip~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                      ++. ++|+ .+.++..|++|+||+|+++.       +|..+.++..|+.|  .+|++. ..| ++..++.|+++|++.|+
T Consensus       394 rL~-~fpas~~~kle~LeeL~LSGNkL~~-------Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  394 RLN-SFPASKLRKLEELEELNLSGNKLTT-------LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             ccc-cCCHHHHhchHHhHHHhcccchhhh-------hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence            765 4444 35666777777777777765       67778888888877  667776 677 78888888999998888


Q ss_pred             CC
Q 039201          256 LN  257 (258)
Q Consensus       256 l~  257 (258)
                      |+
T Consensus       464 L~  465 (1081)
T KOG0618|consen  464 LS  465 (1081)
T ss_pred             hh
Confidence            75

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.45  E-value=3.1e-13  Score=128.92  Aligned_cols=158  Identities=22%  Similarity=0.310  Sum_probs=87.5

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .++.|++++|+++ .+|..+.  .+|++|++++|.++ .+|..+.  .+|+.|+ ++|++. .+|..+.  ++|++|+++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence            6788999999887 4666543  47888888888877 5665443  3566666 445444 5555443  356666666


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCcccc-------------------CCCCCCeEecCCCcCCccCC
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFN-------------------SLINLARLNLGQKNLGIGTT  209 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~-------------------~l~~L~~L~ls~N~l~g~~p  209 (258)
                      +|+++ .+| .+.  ++|++    |++++|+++ .+|..+.                   -.++|+.|++++|.+++ +|
T Consensus       271 ~N~L~-~LP~~l~--~sL~~----L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP  341 (754)
T PRK15370        271 HNKIS-CLPENLP--EELRY----LSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LP  341 (754)
T ss_pred             CCccC-ccccccC--CCCcE----EECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CC
Confidence            66665 345 332  34555    555555544 2332211                   11345555555555543 22


Q ss_pred             CCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          210 SDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      .      .+.  ++|+.|  ++|+++ .+|..+.  ++|+.|++++|+|+
T Consensus       342 ~------~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt  380 (754)
T PRK15370        342 A------SLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT  380 (754)
T ss_pred             h------hhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence            2      111  234444  666666 4565542  46677777777664

>PLN03150 hypothetical protein; Provisional

Probab=99.45  E-value=2.1e-13  Score=128.71  Aligned_cols=110  Identities=27%  Similarity=0.456  Sum_probs=100.6

Q ss_pred             CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce
Q 039201           95 FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE  172 (258)
Q Consensus        95 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~  172 (258)
                      .++.|+|++|.+.|.+|..++++++|++|+ ++|.+.|.+|+.++.+++|++|+|++|+++|.+| .++++++|++    
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~----  494 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI----  494 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE----
Confidence            478899999999999999999999999999 8899999999999999999999999999999999 8999999999    


Q ss_pred             eecCCCccccccCccccCC-CCCCeEecCCCcCCccC
Q 039201          173 TEKSKNRFTGKLGIDFNSL-INLARLNLGQKNLGIGT  208 (258)
Q Consensus       173 L~l~~n~~~g~ip~~~~~l-~~L~~L~ls~N~l~g~~  208 (258)
                      |++++|+++|.+|..++.. .++..+++.+|......
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence            9999999999999988764 46788999988754433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.43  E-value=1.3e-14  Score=125.78  Aligned_cols=181  Identities=21%  Similarity=0.207  Sum_probs=129.4

Q ss_pred             cEEEEEcCCCCCcc------cCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCC---CcEEc-CCCccCC----CCCcc
Q 039201           71 RVTKLDLRSKSIGG------FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR---LETLI-GGYRLGG----KIPES  136 (258)
Q Consensus        71 ~v~~l~l~~~~l~g------~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~---L~~L~-~~n~l~g----~ip~~  136 (258)
                      .++.++++++.+.+      .++..+..+++|++|++++|.+.+..+..+..+.+   |++|+ ++|.+++    .+...
T Consensus        52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence            57888888887752      23456777889999999999988666665655555   99998 6677763    23345


Q ss_pred             cCCC-CCCCEEEccccccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCc
Q 039201          137 LGQL-GSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       137 ~~~l-~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g  206 (258)
                      +..+ ++|+.|++++|.+++.    ++ .+..+++|++    +++++|.+++.    ++..+...++|++|++++|.+++
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~----L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKE----LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCE----EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            5666 8899999999999843    23 4556778999    88999988743    44455667799999999998875


Q ss_pred             cCCCCchhhhhhcCCCCCccc--cccccccccchhhcC-----CCCCCeEeccCCcCC
Q 039201          207 GTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE-----LRNLQAPDLSENNLN  257 (258)
Q Consensus       207 ~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~  257 (258)
                      ....  .+...+..+++|++|  ++|++++..+..+..     .+.|+.|++++|.++
T Consensus       208 ~~~~--~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         208 EGAS--ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHH--HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            3211  134456677778887  888888644444322     378999999999885

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.42  E-value=1.6e-12  Score=130.50  Aligned_cols=125  Identities=22%  Similarity=0.180  Sum_probs=81.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|+++++.+. .++..+..+++|++|+|+++...+.+|. ++.+++|++|+ .+|.....+|..++++++|++|+++
T Consensus       612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            5666777666664 4566667777777888777655556664 67777777777 4555556777777888888888887


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      +|..-+.+| .+ ++++|++    +++++|...+.+|..   ..+|++|++++|.++
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~----L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYR----LNLSGCSRLKSFPDI---STNISWLDLDETAIE  738 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCE----EeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence            765555677 43 6777777    666666554445432   235556666666543

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.42  E-value=1.7e-14  Score=135.21  Aligned_cols=169  Identities=23%  Similarity=0.302  Sum_probs=126.9

Q ss_pred             cEEEEEcCCCCCcc----------------------cCCccCCCCCCCCEEEccCCCCcCCCCccc-CC-----------
Q 039201           71 RVTKLDLRSKSIGG----------------------FLSPFVGNPSFVRVIVLANNSYYGEIPNEV-GC-----------  116 (258)
Q Consensus        71 ~v~~l~l~~~~l~g----------------------~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l-~~-----------  116 (258)
                      .|+.++...|.++.                      .+|+....++.|++|||..|++. .+|+.+ .-           
T Consensus       265 nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s  343 (1081)
T KOG0618|consen  265 NLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVS  343 (1081)
T ss_pred             cceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhh
Confidence            57777777666531                      35566666777777777777664 444321 10           


Q ss_pred             --------------CCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCc
Q 039201          117 --------------LSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNR  179 (258)
Q Consensus       117 --------------l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~  179 (258)
                                    .+.|+.|+ .+|.++...-+-+.+.++|+.|+|++|++. .+|  .+.++..|++    |++++|+
T Consensus       344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Lee----L~LSGNk  418 (1081)
T KOG0618|consen  344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEE----LNLSGNK  418 (1081)
T ss_pred             hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHH----Hhcccch
Confidence                          01111111 566777776666889999999999999997 788  6789999999    9999999


Q ss_pred             cccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccccc-ccchhhcCCCCCCeEeccCCc
Q 039201          180 FTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTG-TIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       180 ~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g-~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                      ++ .+|..+.++..|++|...+|.+.-       +| ++.+++.|+.+  +.|+|+- .+|.... .++|++||+++|.
T Consensus       419 L~-~Lp~tva~~~~L~tL~ahsN~l~~-------fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  419 LT-TLPDTVANLGRLHTLRAHSNQLLS-------FP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hh-hhhHHHHhhhhhHHHhhcCCceee-------ch-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            98 899999999999999999999975       45 89999999888  8999885 3444433 3899999999996

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.37  E-value=1e-14  Score=130.51  Aligned_cols=167  Identities=24%  Similarity=0.305  Sum_probs=134.5

Q ss_pred             EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201           72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE  150 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~  150 (258)
                      .+..|++.|++. ++|..+..+..|+.+.|+.|.+. .+|..++++..|.+|| +.|+++ .+|..++.|+ |+.|.+++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            456778888876 67888888888888888888887 7888888888888888 777776 6788888777 88888888


Q ss_pred             cccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          151 NNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       151 n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      |+++ .+| .++..+.|..    +|.+.|.+. .+|+.++.+.+|+.|.+..|++..       +|+++..++ |..|  
T Consensus       153 Nkl~-~lp~~ig~~~tl~~----ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-------lp~El~~Lp-Li~lDf  218 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAH----LDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-------LPEELCSLP-LIRLDF  218 (722)
T ss_pred             Cccc-cCCcccccchhHHH----hhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-------CCHHHhCCc-eeeeec
Confidence            8886 677 7887777888    888888887 778888888888888888888876       677777554 4445  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ++|+++ .||-.|.+|+.||+|-|.+|.|+
T Consensus       219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            888888 88999999999999999988875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.32  E-value=1.1e-11  Score=118.24  Aligned_cols=70  Identities=19%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201           74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN  152 (258)
Q Consensus        74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~  152 (258)
                      .|+++.++++ .+|+.+.  .+|+.|++++|+++ .+|.   .+++|++|+ ++|+++ .+|..   .++|++|++++|.
T Consensus       205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCc
Confidence            4555555555 3554443  24555555555555 3443   134555555 444444 33432   2344444444444


Q ss_pred             cc
Q 039201          153 FS  154 (258)
Q Consensus       153 l~  154 (258)
                      ++
T Consensus       274 L~  275 (788)
T PRK15387        274 LT  275 (788)
T ss_pred             hh
Confidence            43

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=2.3e-12  Score=115.38  Aligned_cols=169  Identities=31%  Similarity=0.411  Sum_probs=120.6

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCC-CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPS-FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~-~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      .++.+++.++.++ .+++....+. +|++|++++|.+. .+|..+..+++|+.|+ +.|.+. .+|...+.+++|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            4677777777776 5666666664 7888888887776 5665677777788777 555555 56666667777888888


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      ++|+++ .+| .+.....|++    +.+++|+.. .++..+.++.++..+.+.+|.+..       .+..++.++.+++|
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~----l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-------~~~~~~~l~~l~~L  260 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEE----LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-------LPESIGNLSNLETL  260 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhh----hhhcCCcce-ecchhhhhcccccccccCCceeee-------ccchhcccccccee
Confidence            888776 666 4455555777    777777533 455667777777777777777764       24667777777777


Q ss_pred             --cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 --QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 --~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                        ++|+++ .++. ++.+.+++.|++++|.++
T Consensus       261 ~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         261 DLSNNQIS-SISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccccc-cccc-ccccCccCEEeccCcccc
Confidence              788887 5665 888889999999988764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.17  E-value=8.1e-13  Score=118.57  Aligned_cols=149  Identities=26%  Similarity=0.371  Sum_probs=129.6

Q ss_pred             CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201           91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF  168 (258)
Q Consensus        91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~  168 (258)
                      -.++.-...|++.|++. ++|.+.+.+..|+.+. ..|.+. .||+.++++..|+++||+.|+++ .+| .++.++ |+.
T Consensus        72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   72 YDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             ccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            45666677899999998 8999998888888887 445544 79999999999999999999998 777 888877 788


Q ss_pred             ecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCC
Q 039201          169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNL  246 (258)
Q Consensus       169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L  246 (258)
                          +-+++|+++ .+|..++....|..||.+.|.+..       .|+.++.+.+|+.|  ..|++. .+|+++..|+ |
T Consensus       148 ----li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-------lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-L  213 (722)
T KOG0532|consen  148 ----LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-------LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-L  213 (722)
T ss_pred             ----EEEecCccc-cCCcccccchhHHHhhhhhhhhhh-------chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-e
Confidence                888999987 899999999999999999999976       78999999999988  788988 8999999764 9


Q ss_pred             CeEeccCCcCC
Q 039201          247 QAPDLSENNLN  257 (258)
Q Consensus       247 ~~L~Ls~N~l~  257 (258)
                      ..||+++|+++
T Consensus       214 i~lDfScNkis  224 (722)
T KOG0532|consen  214 IRLDFSCNKIS  224 (722)
T ss_pred             eeeecccCcee
Confidence            99999999975

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=2.9e-11  Score=108.27  Aligned_cols=167  Identities=27%  Similarity=0.386  Sum_probs=134.8

Q ss_pred             EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCC-CCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLS-RLETLI-GGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~-~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      .+++..+.+... ...+..++.++.|++.+|.++ .+|+....++ +|++|+ ++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            466666666333 234566688999999999998 7888788885 999999 666665 67778999999999999999


Q ss_pred             ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201          152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q  228 (258)
Q Consensus       152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~  228 (258)
                      +++ .+| ..+..+.|+.    +++++|+++ .+|........|+++.+++|....       .+..+.+++.+..+  .
T Consensus       174 ~l~-~l~~~~~~~~~L~~----L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-------~~~~~~~~~~l~~l~l~  240 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNN----LDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-------LLSSLSNLKNLSGLELS  240 (394)
T ss_pred             hhh-hhhhhhhhhhhhhh----eeccCCccc-cCchhhhhhhhhhhhhhcCCccee-------cchhhhhcccccccccC
Confidence            998 666 6668899999    999999998 888877777889999999996332       45667777776666  7


Q ss_pred             ccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          229 YNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +|++. .+|..++.++++++|++++|+++
T Consensus       241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         241 NNKLE-DLPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             Cceee-eccchhccccccceecccccccc
Confidence            78877 55888999999999999999875

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.95  E-value=6.3e-10  Score=88.20  Aligned_cols=131  Identities=24%  Similarity=0.275  Sum_probs=47.9

Q ss_pred             CCCCCCCEEEccCCCCcCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cc-cCCCCc
Q 039201           91 GNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SI-FNISSL  166 (258)
Q Consensus        91 ~~l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~-~~l~~L  166 (258)
                      .+...+++|+|++|.++ .|. .++ .+.+|+.|+ +.|.+. .++ .+..+++|++|++++|+++ .++ .+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            34445666677766665 232 243 455666666 444444 333 3667888999999999998 444 44 358889


Q ss_pred             ceecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccccccccc
Q 039201          167 EFQSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLT  233 (258)
Q Consensus       167 ~~l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~  233 (258)
                      ++    |++++|++... --..++.+++|++|++.+|.++.. + .+ -...+..+++|+.|++..++
T Consensus        91 ~~----L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~-~Y-R~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   91 QE----LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K-NY-RLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             -E----EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-T-TH-HHHHHHH-TT-SEETTEETT
T ss_pred             CE----EECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-h-hH-HHHHHHHcChhheeCCEEcc
Confidence            99    88899988631 124467888999999999988753 1 11 23456777778777555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.84  E-value=3.3e-09  Score=84.10  Aligned_cols=124  Identities=23%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             cCCCCCCcEEc-CCCccCCCCCcccC-CCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccc-cC
Q 039201          114 VGCLSRLETLI-GGYRLGGKIPESLG-QLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDF-NS  190 (258)
Q Consensus       114 l~~l~~L~~L~-~~n~l~g~ip~~~~-~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~-~~  190 (258)
                      +.+..++++|+ .+|.++ .| +.++ .+.+|+.|++++|.++ .++.+..++.|++    |++++|+++ .++..+ ..
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~----L~L~~N~I~-~i~~~l~~~   86 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKT----LDLSNNRIS-SISEGLDKN   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---TT----TT--E----EE--SS----S-CHHHHHH
T ss_pred             cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-cccCccChhhhhh----cccCCCCCC-ccccchHHh
Confidence            44566788888 666655 34 3465 5889999999999998 5666777899999    999999998 455444 46


Q ss_pred             CCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccch----hhcCCCCCCeEec
Q 039201          191 LINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPD----TTGELRNLQAPDL  251 (258)
Q Consensus       191 l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~----~l~~l~~L~~L~L  251 (258)
                      +++|++|++++|.+...     .....++.+++|+.|  .+|.++.. +.    .+..+|+|+.||-
T Consensus        87 lp~L~~L~L~~N~I~~l-----~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDL-----NELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -TT--EEE-TTS---SC-----CCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CCcCCEEECcCCcCCCh-----HHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            89999999999999763     234567777888777  78888743 32    3677899999875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=3.9e-10  Score=94.74  Aligned_cols=103  Identities=17%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             CCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCcceecce
Q 039201           94 SFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSE  172 (258)
Q Consensus        94 ~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~  172 (258)
                      ..|+++|||.|.++ .+..+..-++.++.|+ +.|.+. .+ ..+..+++|+.|||++|.++...-+-.++.+++.    
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt----  356 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT----  356 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEee----
Confidence            44555566655554 4444444455555555 444443 12 1244455555555555554421112223344444    


Q ss_pred             eecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201          173 TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       173 L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      +.++.|.+. . -+.++++-+|..||+++|++.
T Consensus       357 L~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  357 LKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eehhhhhHh-h-hhhhHhhhhheeccccccchh
Confidence            444555442 1 122444445555555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.76  E-value=1.3e-09  Score=94.41  Aligned_cols=92  Identities=22%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             cCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc-cccc
Q 039201           77 LRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE-NNFS  154 (258)
Q Consensus        77 l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~-n~l~  154 (258)
                      -++.+++ ++|..+.  ..-..++|..|+++-.-|..|+.+++|+.|| +.|+++..-|..|.++++|..|.+.+ |+++
T Consensus        53 Cr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   53 CRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             ccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            3444454 4554332  2446789999999844446789999999999 88999988899999999998888877 8887


Q ss_pred             cccc--cccCCCCcceecce
Q 039201          155 GTLR--SIFNISSLEFQSSE  172 (258)
Q Consensus       155 g~~p--~~~~l~~L~~l~l~  172 (258)
                       .+|  .|+++.+++.|.+.
T Consensus       130 -~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen  130 -DLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             -hhhhhHhhhHHHHHHHhcC
Confidence             677  78888888775554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=9.6e-09  Score=67.10  Aligned_cols=60  Identities=30%  Similarity=0.341  Sum_probs=50.3

Q ss_pred             CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201          141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL  204 (258)
Q Consensus       141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l  204 (258)
                      ++|++|++++|+++..-+ .+..+++|++    +++++|+++..-|..+..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~----L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLET----LDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESE----EEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCE----eEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578899999999884434 7788999999    89999999877777889999999999998875

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.72  E-value=1.6e-08  Score=61.18  Aligned_cols=37  Identities=49%  Similarity=0.948  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHhCC-CCCCCCCCCCCC--CCCccccceeeC
Q 039201           30 KTDHLLAIKSQLQ-DPLGPTSSWKAS--LNLCQWTGVTCS   66 (258)
Q Consensus        30 ~~~aL~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~   66 (258)
                      +.+||++||+++. +|...+.+|...  .++|.|.||+|+
T Consensus         4 d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    4 DRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            4559999999997 576789999987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.6e-09  Score=93.64  Aligned_cols=176  Identities=21%  Similarity=0.205  Sum_probs=105.6

Q ss_pred             cEEEEEcCCCCCcccCC--ccCCCCCCCCEEEccCCCCcCCCC--cccCCCCCCcEEc-CCCccCCCCCccc-CCCCCCC
Q 039201           71 RVTKLDLRSKSIGGFLS--PFVGNPSFVRVIVLANNSYYGEIP--NEVGCLSRLETLI-GGYRLGGKIPESL-GQLGSIN  144 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp--~~~~~l~~L~~L~Ls~n~l~g~~p--~~l~~l~~L~~L~-~~n~l~g~ip~~~-~~l~~L~  144 (258)
                      +++.+.|++..... .+  .....+++++.||||.|-|+...|  .....+++|+.|+ +.|.+.-...+.. ..++.|+
T Consensus       122 kL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  122 KLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             hhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            56666666655432 22  356677888888888887764333  2334678888887 6666653333222 2567788


Q ss_pred             EEEcccccccc-ccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCC
Q 039201          145 YLILAENNFSG-TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCS  222 (258)
Q Consensus       145 ~L~L~~n~l~g-~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~  222 (258)
                      .|.++.|.++- .+- -...+|+|+.    |++..|...+.-......++.|+.|||++|++-...     ....++.++
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~----L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-----~~~~~~~l~  271 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEV----LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-----QGYKVGTLP  271 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHH----hhhhcccccceecchhhhhhHHhhccccCCcccccc-----ccccccccc
Confidence            88888888772 222 3446777887    777777533333333455667788888877765421     224566666


Q ss_pred             CCccc--ccccccc-ccchh-----hcCCCCCCeEeccCCcC
Q 039201          223 KLKTL--QYNQLTG-TIPDT-----TGELRNLQAPDLSENNL  256 (258)
Q Consensus       223 ~L~~L--~~N~l~g-~ip~~-----l~~l~~L~~L~Ls~N~l  256 (258)
                      .|..|  +.+.++. .+|+.     ...+++|++|++..|++
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            66555  4554442 12322     34567777887777775

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.69  E-value=1.6e-09  Score=91.18  Aligned_cols=128  Identities=26%  Similarity=0.252  Sum_probs=104.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .++.+||++|.++ .+.+++.-.+.++.|++|+|.+. .+.. +..+.+|+.|| ++|.++ .+-..-.++-++++|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            4678999999886 67888889999999999999997 4444 88899999999 556554 454445678899999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCcc
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      +|.+. .+..+.++.+|..    +|+++|++.. .-...+++++-|+++.+.+|.+.+.
T Consensus       361 ~N~iE-~LSGL~KLYSLvn----LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  361 QNKIE-TLSGLRKLYSLVN----LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhHh-hhhhhHhhhhhee----ccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            99987 4556778889999    9999999852 2345689999999999999999874

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.61  E-value=1.9e-08  Score=97.92  Aligned_cols=175  Identities=21%  Similarity=0.309  Sum_probs=101.0

Q ss_pred             CcEEEEEcCCCC--CcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEE
Q 039201           70 PRVTKLDLRSKS--IGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYL  146 (258)
Q Consensus        70 ~~v~~l~l~~~~--l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L  146 (258)
                      +++++|-+.++.  +.-...+.|..++.|++|||++|.--+.+|.+++++-+|++|+ +...+. .+|..+++|++|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            356777776665  3322233466788888888888776677888888888888887 444444 778888888888888


Q ss_pred             Eccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc
Q 039201          147 ILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK  225 (258)
Q Consensus       147 ~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~  225 (258)
                      ++..+.....+| ....+++|++|.+  ..+....+...-..+.++.+|+.+........        ....+..+.+|.
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l--~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~--------~~e~l~~~~~L~  693 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRL--PRSALSNDKLLLKELENLEHLENLSITISSVL--------LLEDLLGMTRLR  693 (889)
T ss_pred             ccccccccccccchhhhcccccEEEe--eccccccchhhHHhhhcccchhhheeecchhH--------hHhhhhhhHHHH
Confidence            887776655566 5556788888432  11222222233333444555555544322220        111222222222


Q ss_pred             cc------cccccccccchhhcCCCCCCeEeccCCcC
Q 039201          226 TL------QYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       226 ~L------~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      .+      ..+... ..+..++.+.+|+.|.+.....
T Consensus       694 ~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGI  729 (889)
T ss_pred             HHhHhhhhcccccc-eeecccccccCcceEEEEcCCC
Confidence            22      122222 4556677788888888766554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=2.9e-08  Score=64.82  Aligned_cols=57  Identities=33%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             CCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201           95 FVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN  152 (258)
Q Consensus        95 ~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~  152 (258)
                      +|++|++++|+++ .+| ..+.++++|++|+ ++|.+...-|..+.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4455555555554 222 2223333333333 3333322222334444444444444443

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=6.4e-09  Score=91.19  Aligned_cols=182  Identities=21%  Similarity=0.228  Sum_probs=106.3

Q ss_pred             CcEEEEEcCCCCCccc--CCccCCCCCCCCEEEccCCCCcCCCCccc-CCCCCCcEEc-CCCccCC-CCCcccCCCCCCC
Q 039201           70 PRVTKLDLRSKSIGGF--LSPFVGNPSFVRVIVLANNSYYGEIPNEV-GCLSRLETLI-GGYRLGG-KIPESLGQLGSIN  144 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~--lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l-~~l~~L~~L~-~~n~l~g-~ip~~~~~l~~L~  144 (258)
                      ++|+.|||+.|-+..-  +-.....|++|+.|+++.|.+.-...... ..++.|+.|. +.+.++- .+-..+..+|+|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            5899999999876543  23467789999999999998864333222 2466777776 5555541 1122234567888


Q ss_pred             EEEccccccccccc-cccCCCCcceecceeecCCCccccccC--ccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC
Q 039201          145 YLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLG--IDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC  221 (258)
Q Consensus       145 ~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip--~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l  221 (258)
                      .|+|..|..-+.-. ....++.|++    |||++|++- ..+  .-.+.++.|..|+++.+.++..--..-+.......+
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~----LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQE----LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhh----ccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            88888775221111 3334566777    777777764 222  336677777777777777654311000011113445


Q ss_pred             CCCccc--cccccccccc--hhhcCCCCCCeEeccCCcCC
Q 039201          222 SKLKTL--QYNQLTGTIP--DTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       222 ~~L~~L--~~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      .+|++|  ..|++. ..+  ..+..+.+|+.|.+..|.|+
T Consensus       301 ~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  301 PKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            566666  666664 232  22444556666666666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.30  E-value=1.6e-07  Score=80.49  Aligned_cols=112  Identities=15%  Similarity=0.112  Sum_probs=60.3

Q ss_pred             CCCCCCCCEEEccCCCCcCCCCcc----cCCCCCCcEEcCCCccCCCCC--------------cccCCCCCCCEEEcccc
Q 039201           90 VGNPSFVRVIVLANNSYYGEIPNE----VGCLSRLETLIGGYRLGGKIP--------------ESLGQLGSINYLILAEN  151 (258)
Q Consensus        90 ~~~l~~L~~L~Ls~n~l~g~~p~~----l~~l~~L~~L~~~n~l~g~ip--------------~~~~~l~~L~~L~L~~n  151 (258)
                      +...++|+++|||+|.|.-.-++.    +..++.|++|+.+|+=.|+.-              .-.+.-++|+++..++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            344557777777777775433332    345677777774443322211              11234466777777777


Q ss_pred             ccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCC
Q 039201          152 NFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       152 ~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      ++...    +. .+...+.|+.    +.++.|.+.-.    +...+..+++|++||+.+|.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~lee----vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEE----VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccccHHHHHHHHHhccccce----EEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            66521    11 2334556666    56666655311    2233456666666666666665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.29  E-value=2.2e-07  Score=83.93  Aligned_cols=175  Identities=25%  Similarity=0.321  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201           72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE  150 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~  150 (258)
                      +..+.++.|.+.. +-..+..++.|+.+++.+|.+.. +...+..+.+|++|+ ++|.++ .+. .+..++.|+.|++++
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheecc
Confidence            3444444444432 22235555666666666666652 222245566666666 444433 221 244455566666666


Q ss_pred             cccccccccccCCCCcceecceeecCCCccccccCcc-ccCCCCCCeEecCCCcCCccCCCCc--------------hhh
Q 039201          151 NNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGID-FNSLINLARLNLGQKNLGIGTTSDL--------------DFI  215 (258)
Q Consensus       151 n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~-~~~l~~L~~L~ls~N~l~g~~p~~~--------------~~~  215 (258)
                      |.++ .++.+..+++|+.    +++++|++...-+ . ...+.+++.+++.+|.+.-.-....              ...
T Consensus       150 N~i~-~~~~~~~l~~L~~----l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  150 NLIS-DISGLESLKSLKL----LDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             Ccch-hccCCccchhhhc----ccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec
Confidence            6665 3333444555555    5666666552222 1 3455556666666665432110000              000


Q ss_pred             hhhcCCCC--Cccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          216 TLLRNCSK--LKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       216 ~~l~~l~~--L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ..+..+..  |+.+  ++|.+. .++..+..+.++..+++..|+++
T Consensus       224 ~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  224 EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence            11111111  3333  666665 44456667778888888888765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.11  E-value=1.7e-06  Score=84.46  Aligned_cols=104  Identities=25%  Similarity=0.258  Sum_probs=64.0

Q ss_pred             CCCEEEccCCCC-cCCCCc-ccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceec
Q 039201           95 FVRVIVLANNSY-YGEIPN-EVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQS  170 (258)
Q Consensus        95 ~L~~L~Ls~n~l-~g~~p~-~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~  170 (258)
                      .|++|-+.+|.- ...++. .|..++.|+.|| ++|.-.+.+|.++++|-+|+||++++..++ .+| .+.++..|.+  
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~--  622 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY--  622 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe--
Confidence            566666666641 123333 355677777777 445555667777777777777777777666 666 6777777777  


Q ss_pred             ceeecCCCccccccCccccCCCCCCeEecCCCc
Q 039201          171 SETEKSKNRFTGKLGIDFNSLINLARLNLGQKN  203 (258)
Q Consensus       171 l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~  203 (258)
                        |++..+.....+|.....+++|++|.+..-.
T Consensus       623 --Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 --LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             --eccccccccccccchhhhcccccEEEeeccc
Confidence              6666655544455555557777777664443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=7.9e-08  Score=89.32  Aligned_cols=108  Identities=25%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             cccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchh
Q 039201          135 ESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDF  214 (258)
Q Consensus       135 ~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~  214 (258)
                      +++.-++.|+.|+|++|+|+.. ..+..++.|++    ||+++|.++ .+|.--..-.+|+.|.+++|.++.        
T Consensus       181 ~SLqll~ale~LnLshNk~~~v-~~Lr~l~~Lkh----LDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t--------  246 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKH----LDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT--------  246 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh-HHHHhcccccc----cccccchhc-cccccchhhhhheeeeecccHHHh--------
Confidence            4455567788888888887732 25566777888    778888876 555421112247788888887763        


Q ss_pred             hhhhcCCCCCccc--ccccccccc-chhhcCCCCCCeEeccCCcC
Q 039201          215 ITLLRNCSKLKTL--QYNQLTGTI-PDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       215 ~~~l~~l~~L~~L--~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l  256 (258)
                      ...+.++++|+.|  ++|-+.+-- -..+..+..|+.|.|.+|.+
T Consensus       247 L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  247 LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            3456666666666  777766521 12345566777777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.05  E-value=7.2e-07  Score=80.66  Aligned_cols=108  Identities=22%  Similarity=0.216  Sum_probs=82.6

Q ss_pred             CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCccee
Q 039201           91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQ  169 (258)
Q Consensus        91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l  169 (258)
                      ..+..++.+++..|.+. .+-..+..+++|+.|+ ..|.+. .+...+..+++|++|++++|.++ .+..+..++.|+. 
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~-  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKE-  144 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchhhccchhh-
Confidence            45677788888888886 3334477888999998 556665 45444778999999999999998 4445556677888 


Q ss_pred             cceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          170 SSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       170 ~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                         |++++|.++ .+. .+..+..|+.+++++|.+...
T Consensus       145 ---L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  145 ---LNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             ---heeccCcch-hcc-CCccchhhhcccCCcchhhhh
Confidence               999999987 333 356689999999999998763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=1.5e-07  Score=87.51  Aligned_cols=122  Identities=21%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc-ccCCCCCCCEEEccc
Q 039201           73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE-SLGQLGSINYLILAE  150 (258)
Q Consensus        73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~-~~~~l~~L~~L~L~~  150 (258)
                      ..++++.|.+. .+.+++.-+++|+.|+|+.|+++. +. .+..|+.|++|| ++|.+. .+|. ....+. |+.|.+++
T Consensus       167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecc
Confidence            33344444443 233344444455555555555441 11 334444444544 444443 2221 111222 55555555


Q ss_pred             cccccccccccCCCCcceecceeecCCCcccccc-CccccCCCCCCeEecCCCcC
Q 039201          151 NNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKL-GIDFNSLINLARLNLGQKNL  204 (258)
Q Consensus       151 n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~i-p~~~~~l~~L~~L~ls~N~l  204 (258)
                      |.++ .+-.+.++.+|+.    ||+++|-+.+.= -.-++.+..|+.|+|.+|.+
T Consensus       242 N~l~-tL~gie~LksL~~----LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALT-TLRGIENLKSLYG----LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHH-hhhhHHhhhhhhc----cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            5544 2223444455555    445555443220 01123344445555555543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.95  E-value=2e-06  Score=73.85  Aligned_cols=180  Identities=23%  Similarity=0.321  Sum_probs=125.6

Q ss_pred             CcEEEEEcCCCCCcccCCc----cCCCCCCCCEEEccCCCCcC----C---------CCcccCCCCCCcEEc-CCCccCC
Q 039201           70 PRVTKLDLRSKSIGGFLSP----FVGNPSFVRVIVLANNSYYG----E---------IPNEVGCLSRLETLI-GGYRLGG  131 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~----~~~~l~~L~~L~Ls~n~l~g----~---------~p~~l~~l~~L~~L~-~~n~l~g  131 (258)
                      |+++.+||+.|-+.-.-++    .+...+.|++|.|.+|.+.-    .         .....+.-+.|+++. .+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4899999999988644333    56778999999999998741    1         122234567788888 6666542


Q ss_pred             CCC-----cccCCCCCCCEEEccccccc--cc--cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeE
Q 039201          132 KIP-----ESLGQLGSINYLILAENNFS--GT--LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARL  197 (258)
Q Consensus       132 ~ip-----~~~~~l~~L~~L~L~~n~l~--g~--~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L  197 (258)
                       -+     ..+...+.|+.+.++.|.+.  |.  +. .+..+++|+.    ||+.+|-|+..    +...+..+++|+.|
T Consensus       172 -~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~Lev----Ldl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  172 -GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEV----LDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             -ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCccee----eecccchhhhHHHHHHHHHhcccchheee
Confidence             22     23566789999999999885  32  12 5678899999    99999998633    34456778899999


Q ss_pred             ecCCCcCCccCCCCchhhhhhc-CCCCCccc--ccccccc----ccchhhcCCCCCCeEeccCCcC
Q 039201          198 NLGQKNLGIGTTSDLDFITLLR-NCSKLKTL--QYNQLTG----TIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       198 ~ls~N~l~g~~p~~~~~~~~l~-~l~~L~~L--~~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      +++++.++..-  ...+...+. ..++|+.+  .+|.++.    .+-..++..+.|..|+|+.|.|
T Consensus       247 ~l~dcll~~~G--a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEG--AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccccc--HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99999887541  111223332 24566666  7887763    2334456678899999999987

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=3e-07  Score=77.46  Aligned_cols=153  Identities=18%  Similarity=0.125  Sum_probs=96.1

Q ss_pred             CCCEEEccCCCCcCC-CCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccccc--c-cccCCCCccee
Q 039201           95 FVRVIVLANNSYYGE-IPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTL--R-SIFNISSLEFQ  169 (258)
Q Consensus        95 ~L~~L~Ls~n~l~g~-~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~--p-~~~~l~~L~~l  169 (258)
                      .|++||||+..++.. +-..+..+++|+.|. .++.+.+.|-..+.+=.+|+.|+++.++=-...  . -+.+++.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            477777777666521 222234566666666 666666666666666677777777664311111  1 34456666664


Q ss_pred             cce----------------------eecCCCcc---ccccCccccCCCCCCeEecCCCc-CCccCCCCchhhhhhcCCCC
Q 039201          170 SSE----------------------TEKSKNRF---TGKLGIDFNSLINLARLNLGQKN-LGIGTTSDLDFITLLRNCSK  223 (258)
Q Consensus       170 ~l~----------------------L~l~~n~~---~g~ip~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~l~~l~~  223 (258)
                      +++                      |+++++.-   ...+..-..++++|.+|||++|. ++..      ....+-+++.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~------~~~~~~kf~~  339 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND------CFQEFFKFNY  339 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch------HHHHHHhcch
Confidence            443                      55544321   11222224678999999998775 5543      6778889999


Q ss_pred             Cccccccccccccchh---hcCCCCCCeEeccC
Q 039201          224 LKTLQYNQLTGTIPDT---TGELRNLQAPDLSE  253 (258)
Q Consensus       224 L~~L~~N~l~g~ip~~---l~~l~~L~~L~Ls~  253 (258)
                      |++|+-++-.|.+|..   +...+.|.+||.-+
T Consensus       340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             heeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence            9999888777777776   46778899998754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.6e-05  Score=48.14  Aligned_cols=32  Identities=31%  Similarity=0.448  Sum_probs=17.8

Q ss_pred             eecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201          173 TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       173 L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      |++++|+++ .+|+.++++++|++|++++|.++
T Consensus         6 L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    6 LDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             EEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             EEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            555555555 45555556666666666666555

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.86  E-value=1.4e-05  Score=48.37  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=27.2

Q ss_pred             CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccc
Q 039201          141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFT  181 (258)
Q Consensus       141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~  181 (258)
                      ++|++|++++|+++ .+| .++++++|++    +++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~----L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLET----LNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSE----EEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCE----EEecCCCCC
Confidence            46888888888887 566 5888888888    888888876

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.76  E-value=2.7e-06  Score=64.13  Aligned_cols=127  Identities=20%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCCcccCCc---cCCCCCCCCEEEccCCCCcCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEE
Q 039201           72 VTKLDLRSKSIGGFLSP---FVGNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYL  146 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp~---~~~~l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L  146 (258)
                      ...++|+++.+- .++.   .+....+|+..+|++|.|. .+|+.+. +.+.+++|+ .+|.++ .+|.++..++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            344555555442 2332   2333344455566666665 4554443 344555555 344444 567777777777777


Q ss_pred             Eccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          147 ILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       147 ~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      +++.|.+. ..| .+..+.++..    |+..+|... ++|-.+-.-+..-..++.++.+.+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~----Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDM----LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHH----hcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence            77777776 445 5666666666    666666654 5554432222333334455556554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.73  E-value=3.6e-06  Score=63.45  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=66.8

Q ss_pred             CCCEEEccCCCCcCCCCcccCCCCCCcEE---c-CCCccCCCCCcccC-CCCCCCEEEccccccccccc-cccCCCCcce
Q 039201           95 FVRVIVLANNSYYGEIPNEVGCLSRLETL---I-GGYRLGGKIPESLG-QLGSINYLILAENNFSGTLR-SIFNISSLEF  168 (258)
Q Consensus        95 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L---~-~~n~l~g~ip~~~~-~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~  168 (258)
                      .+..+||+++.+- .+++....+....+|   + ++|.|- .+|+.+. ..+-++.+++++|.++ .+| ++..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3455777777663 455544444444444   3 556555 4555554 4456777777777776 677 7777777777


Q ss_pred             ecceeecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201          169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                          ++++.|.+. ..|..+..+.++..|+..+|...
T Consensus       105 ----lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  105 ----LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ----cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence                777777776 56666666777777777777654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.36  E-value=0.00046  Score=55.45  Aligned_cols=101  Identities=24%  Similarity=0.283  Sum_probs=45.9

Q ss_pred             CCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccc--cccccccCCCCcceecce
Q 039201           96 VRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFS--GTLRSIFNISSLEFQSSE  172 (258)
Q Consensus        96 L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~--g~~p~~~~l~~L~~l~l~  172 (258)
                      ...+||++|.+. .++ .+..+++|.+|. .+|+++..-|.--.-+++|..|.|.+|++.  |.+-.+..+++|++    
T Consensus        44 ~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~----  117 (233)
T KOG1644|consen   44 FDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY----  117 (233)
T ss_pred             cceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce----
Confidence            344555555543 222 234455555555 444444222221223455666666666655  22223445556666    


Q ss_pred             eecCCCcccccc---CccccCCCCCCeEecCCC
Q 039201          173 TEKSKNRFTGKL---GIDFNSLINLARLNLGQK  202 (258)
Q Consensus       173 L~l~~n~~~g~i---p~~~~~l~~L~~L~ls~N  202 (258)
                      |.+-+|..+..-   --.+..+++|++||.+.-
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            555555543110   001345566666665443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.35  E-value=9.9e-05  Score=62.60  Aligned_cols=177  Identities=19%  Similarity=0.185  Sum_probs=98.9

Q ss_pred             cEEEEEcCCCCCcc--cCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCC-ccC-CCCCcccCCCCCCCEE
Q 039201           71 RVTKLDLRSKSIGG--FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGY-RLG-GKIPESLGQLGSINYL  146 (258)
Q Consensus        71 ~v~~l~l~~~~l~g--~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n-~l~-g~ip~~~~~l~~L~~L  146 (258)
                      +|+.+||.+|.++.  .+...+.++++|++|+++.|.+...|-..-..+.+|++|-.++ .+. ...-..+..+|.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            78999999998863  3445678999999999999988754432213456777775222 111 0122345677888888


Q ss_pred             Eccccccccc-cc--cccCC-CCcceecce----------------------eecCCCccccc-cCccccCCCCCCeEec
Q 039201          147 ILAENNFSGT-LR--SIFNI-SSLEFQSSE----------------------TEKSKNRFTGK-LGIDFNSLINLARLNL  199 (258)
Q Consensus       147 ~L~~n~l~g~-~p--~~~~l-~~L~~l~l~----------------------L~l~~n~~~g~-ip~~~~~l~~L~~L~l  199 (258)
                      .++.|++... +.  ..... +.+++++..                      +.+..|.+... --.....++.+..|+|
T Consensus       152 HmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL  231 (418)
T KOG2982|consen  152 HMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNL  231 (418)
T ss_pred             hhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhh
Confidence            8888844311 10  11111 122221110                      22222222100 0011233455566777


Q ss_pred             CCCcCCccCCCCchhhhhhcCCCCCccc--ccccccccc----chh--hcCCCCCCeEecc
Q 039201          200 GQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTI----PDT--TGELRNLQAPDLS  252 (258)
Q Consensus       200 s~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~i----p~~--l~~l~~L~~L~Ls  252 (258)
                      +.|++..     |.....+.+++.|+.|  ++|.+..++    +..  ++++++++.|+=+
T Consensus       232 ~~~~ids-----wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  232 GANNIDS-----WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             ccccccc-----HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            7777653     4566778888888887  666665433    221  5778888887643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.30  E-value=9.4e-05  Score=62.00  Aligned_cols=82  Identities=21%  Similarity=0.363  Sum_probs=43.8

Q ss_pred             cEEEEEcCCCCCccc----CCccCCCCCCCCEEEccCCCCcCC----CCc-------ccCCCCCCcEEc-CCCccCCCCC
Q 039201           71 RVTKLDLRSKSIGGF----LSPFVGNPSFVRVIVLANNSYYGE----IPN-------EVGCLSRLETLI-GGYRLGGKIP  134 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~----lp~~~~~l~~L~~L~Ls~n~l~g~----~p~-------~l~~l~~L~~L~-~~n~l~g~ip  134 (258)
                      .++.++|++|.+.-.    +...|++-.+|+..++++- ++|.    +|+       .+-+|++|+..+ +.|.|.-..|
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            567777777776432    3345666667777776653 3332    222       233555555555 5555554444


Q ss_pred             cc----cCCCCCCCEEEcccccc
Q 039201          135 ES----LGQLGSINYLILAENNF  153 (258)
Q Consensus       135 ~~----~~~l~~L~~L~L~~n~l  153 (258)
                      +.    +..-..|.+|.+++|.+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCC
Confidence            33    23345555666655544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.30  E-value=0.00049  Score=61.52  Aligned_cols=71  Identities=20%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      ..+.|+++++.+. .+|.   -..+|++|.++++.--..+|..+  ..+|++|+ .+|.....+|+      +|++|+++
T Consensus        53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~  120 (426)
T PRK15386         53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK  120 (426)
T ss_pred             CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence            6789999988776 4552   23469999998743323566544  25788888 44423335654      46667776


Q ss_pred             cccc
Q 039201          150 ENNF  153 (258)
Q Consensus       150 ~n~l  153 (258)
                      .+..
T Consensus       121 ~n~~  124 (426)
T PRK15386        121 GSAT  124 (426)
T ss_pred             CCCC
Confidence            6554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.18  E-value=0.00059  Score=54.82  Aligned_cols=101  Identities=21%  Similarity=0.146  Sum_probs=45.6

Q ss_pred             CCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC
Q 039201          142 SINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC  221 (258)
Q Consensus       142 ~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l  221 (258)
                      +...+||++|.+- .++.+..++.|.+    |.+++|+++..-|.--..+++|+.|.+.+|++..-     .-...+..|
T Consensus        43 ~~d~iDLtdNdl~-~l~~lp~l~rL~t----Lll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-----~dl~pLa~~  112 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLDNLPHLPRLHT----LLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-----GDLDPLASC  112 (233)
T ss_pred             ccceecccccchh-hcccCCCccccce----EEecCCcceeeccchhhhccccceEEecCcchhhh-----hhcchhccC
Confidence            4445555555543 2333334445555    55555555522222222234455555555554321     112334445


Q ss_pred             CCCccc--cccccccc---cchhhcCCCCCCeEecc
Q 039201          222 SKLKTL--QYNQLTGT---IPDTTGELRNLQAPDLS  252 (258)
Q Consensus       222 ~~L~~L--~~N~l~g~---ip~~l~~l~~L~~L~Ls  252 (258)
                      ++|++|  -+|+.+..   =--.+..+++|++||++
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            555554  33433311   11124566677777664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.96  E-value=0.00028  Score=67.56  Aligned_cols=14  Identities=29%  Similarity=0.358  Sum_probs=8.8

Q ss_pred             CCCCCeEeccCCcC
Q 039201          243 LRNLQAPDLSENNL  256 (258)
Q Consensus       243 l~~L~~L~Ls~N~l  256 (258)
                      +|+|+.||.|+..+
T Consensus       249 LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  249 LPELRFLDCSGTDI  262 (699)
T ss_pred             CccccEEecCCcch
Confidence            56677777666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.90  E-value=0.00073  Score=56.77  Aligned_cols=113  Identities=14%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             cCCCCCCCCEEEccCCCCcCCCCccc----CCCCCCcEEcCCCccCCCCCc--------------ccCCCCCCCEEEccc
Q 039201           89 FVGNPSFVRVIVLANNSYYGEIPNEV----GCLSRLETLIGGYRLGGKIPE--------------SLGQLGSINYLILAE  150 (258)
Q Consensus        89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l----~~l~~L~~L~~~n~l~g~ip~--------------~~~~l~~L~~L~L~~  150 (258)
                      .+.++++|+..+||+|.|....|+.+    ++-+.|++|..+|+=-|++..              -..+-|.|++.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            45667777777777777766666543    455667777744444443321              123456788888888


Q ss_pred             ccccc-ccc----cccCCCCcceecceeecCCCccccc-----cCccccCCCCCCeEecCCCcCC
Q 039201          151 NNFSG-TLR----SIFNISSLEFQSSETEKSKNRFTGK-----LGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       151 n~l~g-~~p----~~~~l~~L~~l~l~L~l~~n~~~g~-----ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      |++.. ..-    .+.....|++    +.+..|.+.-.     +--.+..+.+|++||++.|.|+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~----vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKE----VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCcee----EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            87762 111    1223345666    66666665411     1112345667777777777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.67  E-value=0.00096  Score=55.47  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=17.1

Q ss_pred             CCCCcEEc-CCC--ccCCCCCcccCCCCCCCEEEccccccc
Q 039201          117 LSRLETLI-GGY--RLGGKIPESLGQLGSINYLILAENNFS  154 (258)
Q Consensus       117 l~~L~~L~-~~n--~l~g~ip~~~~~l~~L~~L~L~~n~l~  154 (258)
                      |++|+.|. +.|  ...+.++.....+++|+++++++|++.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            44444444 333  333333333344455555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.65  E-value=0.0014  Score=54.57  Aligned_cols=90  Identities=23%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             cCCCCCCCEEEcccc--ccccccc-cccCCCCcceecceeecCCCcccc--ccCccccCCCCCCeEecCCCcCCccCCCC
Q 039201          137 LGQLGSINYLILAEN--NFSGTLR-SIFNISSLEFQSSETEKSKNRFTG--KLGIDFNSLINLARLNLGQKNLGIGTTSD  211 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n--~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g--~ip~~~~~l~~L~~L~ls~N~l~g~~p~~  211 (258)
                      +-.|++|++|.++.|  +..+.++ ..-++++|++    +++++|++.-  ++++ +..+.+|..|++.+|.-+..-  .
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~----l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~--d  133 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV----LNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLD--D  133 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeE----EeecCCccccccccch-hhhhcchhhhhcccCCccccc--c
Confidence            446788999999999  5566666 4556699999    8999999862  2222 466777888998888766521  0


Q ss_pred             chhhhhhcCCCCCcccccccccc
Q 039201          212 LDFITLLRNCSKLKTLQYNQLTG  234 (258)
Q Consensus       212 ~~~~~~l~~l~~L~~L~~N~l~g  234 (258)
                      . --..+.-+++|++|+..-..|
T Consensus       134 y-re~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  134 Y-REKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             H-HHHHHHHhhhhccccccccCC
Confidence            0 113455567777775544444

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.50  E-value=0.011  Score=53.17  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc--CCCCCcccCCCCCCCEEE
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL--GGKIPESLGQLGSINYLI  147 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l--~g~ip~~~~~l~~L~~L~  147 (258)
                      .|+.|.++++.--..+|..+  ...|++|++++|.....+|..      |++|+ ..+..  .+.+|+.      |+.|.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPss------Lk~L~  138 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNG------LTSLS  138 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeCCCCCcccccCcch------Hhhee
Confidence            68999998754333556544  357899999988333367754      44444 12211  2345543      45555


Q ss_pred             cccccccccccccc-CC-CCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201          148 LAENNFSGTLRSIF-NI-SSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK  202 (258)
Q Consensus       148 L~~n~l~g~~p~~~-~l-~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N  202 (258)
                      +.+++..-.. .+. .+ ++|++    |++++|... .+|..+.  .+|+.|+++.+
T Consensus       139 I~~~n~~~~~-~lp~~LPsSLk~----L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        139 INSYNPENQA-RIDNLISPSLKT----LSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccccccccc-ccccccCCcccE----EEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            5432211000 111 12 46777    666666643 2333222  36777777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.39  E-value=0.0018  Score=62.11  Aligned_cols=104  Identities=17%  Similarity=0.152  Sum_probs=64.2

Q ss_pred             CCCCEEEccccccc-cccc-ccc-CCCCcceecceeecCCCccc-cccCccccCCCCCCeEecCCCcCCccCCCCchhhh
Q 039201          141 GSINYLILAENNFS-GTLR-SIF-NISSLEFQSSETEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT  216 (258)
Q Consensus       141 ~~L~~L~L~~n~l~-g~~p-~~~-~l~~L~~l~l~L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~  216 (258)
                      .+|++|++++...- ...| .++ -+|+|+.    |.+.+-.+. ..+-.-..++++|..||+|+.+++.        ..
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~s----L~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--------l~  189 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRS----LVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--------LS  189 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccce----EEecCceecchhHHHHhhccCccceeecCCCCccC--------cH
Confidence            56777777775433 2223 344 3677887    666554442 2233345677888888888888764        26


Q ss_pred             hhcCCCCCccccccccc---cccchhhcCCCCCCeEeccCCcC
Q 039201          217 LLRNCSKLKTLQYNQLT---GTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       217 ~l~~l~~L~~L~~N~l~---g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      .++++++|+.|+...+.   ...-..+.+|++|++||+|..+.
T Consensus       190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            67777777777332222   12223567889999999987654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.37  E-value=0.001  Score=33.72  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=15.8

Q ss_pred             CCCEEEccCCCCcCCCCcccCC
Q 039201           95 FVRVIVLANNSYYGEIPNEVGC  116 (258)
Q Consensus        95 ~L~~L~Ls~n~l~g~~p~~l~~  116 (258)
                      +|++||+++|+++ .+|+.+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            4778888888887 77776654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.0035  Score=53.46  Aligned_cols=172  Identities=15%  Similarity=0.178  Sum_probs=106.1

Q ss_pred             ccccceeeC-CCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcC-CCCcccCCCCCCcEEc-CCC-------
Q 039201           58 CQWTGVTCS-HRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYG-EIPNEVGCLSRLETLI-GGY-------  127 (258)
Q Consensus        58 c~w~gv~c~-~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g-~~p~~l~~l~~L~~L~-~~n-------  127 (258)
                      -.|+-|.|- ..-|+++.|+++.|.+...|...-..+.+|++|-|.+..+.= .....+..++.++.|. +.|       
T Consensus        84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~  163 (418)
T KOG2982|consen   84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNL  163 (418)
T ss_pred             ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcc
Confidence            357666664 345699999999999876554433567789999988876642 2334445666666664 333       


Q ss_pred             ---ccCCCCCcc--c-----------------CCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccc
Q 039201          128 ---RLGGKIPES--L-----------------GQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGK  183 (258)
Q Consensus       128 ---~l~g~ip~~--~-----------------~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~  183 (258)
                         .....-|+-  +                 .-++++..+.+..|.+...-.  ....++.+..    |+|+.|++..-
T Consensus       164 Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~----LnL~~~~idsw  239 (418)
T KOG2982|consen  164 DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC----LNLGANNIDSW  239 (418)
T ss_pred             ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh----hhhcccccccH
Confidence               222211110  0                 124566666666665543222  3344556666    88888887532


Q ss_pred             c-CccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccccccccc
Q 039201          184 L-GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLT  233 (258)
Q Consensus       184 i-p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~  233 (258)
                      - -..+..+++|..|.+++|.+...+...-...-.++.+++++.|.+-+++
T Consensus       240 asvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIs  290 (418)
T KOG2982|consen  240 ASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKIS  290 (418)
T ss_pred             HHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccc
Confidence            1 2347889999999999999887655443344567888888887433443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.09  E-value=0.00046  Score=58.11  Aligned_cols=84  Identities=20%  Similarity=0.130  Sum_probs=55.7

Q ss_pred             CCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCccCCCCchhhh
Q 039201          138 GQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT  216 (258)
Q Consensus       138 ~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~  216 (258)
                      .+|+.|++|.|+-|+++ .+..+..+++|++    ++|..|.+... --..+.++++|+.|.|..|.-.|..+.++.. .
T Consensus        38 ~kMp~lEVLsLSvNkIs-sL~pl~rCtrLkE----lYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~-~  111 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKIS-SLAPLQRCTRLKE----LYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRR-K  111 (388)
T ss_pred             HhcccceeEEeeccccc-cchhHHHHHHHHH----HHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHH-H
Confidence            46788888888888887 3334556778888    77888876521 1134567788888888888887776655432 3


Q ss_pred             hhcCCCCCccc
Q 039201          217 LLRNCSKLKTL  227 (258)
Q Consensus       217 ~l~~l~~L~~L  227 (258)
                      .+.-+++|+.|
T Consensus       112 VLR~LPnLkKL  122 (388)
T KOG2123|consen  112 VLRVLPNLKKL  122 (388)
T ss_pred             HHHHcccchhc
Confidence            44555555555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.07  E-value=0.0027  Score=32.12  Aligned_cols=15  Identities=33%  Similarity=0.678  Sum_probs=8.4

Q ss_pred             CCEEEccccccccccc
Q 039201          143 INYLILAENNFSGTLR  158 (258)
Q Consensus       143 L~~L~L~~n~l~g~~p  158 (258)
                      |++|++++|+++ .+|
T Consensus         2 L~~Ldls~n~l~-~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIP   16 (22)
T ss_dssp             ESEEEETSSEES-EEG
T ss_pred             ccEEECCCCcCE-eCC
Confidence            555555555555 455

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.0005  Score=58.44  Aligned_cols=54  Identities=15%  Similarity=0.172  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCC-CCcC-CCCcccCCCCCCcEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANN-SYYG-EIPNEVGCLSRLETLI  124 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n-~l~g-~~p~~l~~l~~L~~L~  124 (258)
                      ++..|.+.++.+...+-..+++-..|+.|+++.+ +|+. ...--+.+++.|+.|+
T Consensus       211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            3444555555555555555666666666666653 2321 0111234555666655

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.42  E-value=0.00085  Score=55.18  Aligned_cols=86  Identities=16%  Similarity=0.047  Sum_probs=70.3

Q ss_pred             CCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEE
Q 039201           68 RHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        68 ~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      .+.+++.||++.|++. .+...+..++.+..||++.|.+. -+|..++....++.++++++-....|.+.+..+.+++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            3458999999998875 34455677888889999999886 688888888888888877666668999999999999999


Q ss_pred             cccccccc
Q 039201          148 LAENNFSG  155 (258)
Q Consensus       148 L~~n~l~g  155 (258)
                      +-.|.|.-
T Consensus       118 ~k~~~~~~  125 (326)
T KOG0473|consen  118 QKKTEFFR  125 (326)
T ss_pred             hccCcchH
Confidence            99988763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.93  E-value=0.31  Score=35.88  Aligned_cols=32  Identities=13%  Similarity=0.159  Sum_probs=11.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccC
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLAN  103 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~  103 (258)
                      +++.+.+.. .+...-...+...+.|+.+.+.+
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             CCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            455555542 33322223455555555555554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.90  E-value=0.0076  Score=51.00  Aligned_cols=64  Identities=20%  Similarity=0.186  Sum_probs=30.5

Q ss_pred             CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccC
Q 039201          116 CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLG  185 (258)
Q Consensus       116 ~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip  185 (258)
                      +++.|+.|. +-|.++.-  ..+..|++|+.|+|..|.+...-.  -+.++++|+.    |-|..|.-.|.-+
T Consensus        39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~----LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT----LWLDENPCCGEAG  105 (388)
T ss_pred             hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh----HhhccCCcccccc
Confidence            455555555 44444321  224455555555555555542111  3445555555    4455555554444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.77  E-value=0.36  Score=35.51  Aligned_cols=102  Identities=18%  Similarity=0.180  Sum_probs=40.1

Q ss_pred             cCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201           89 FVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISS  165 (258)
Q Consensus        89 ~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~  165 (258)
                      .+...++|+.+.+.. .+. .++ ..+.++++|+.+...+.+...-...+.++++++.+.+.. .+. .++  .+...++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-Cee-EeChhhcccccccccccccccccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            455666777777764 343 233 345556666666633333321123355565666666654 222 233  4445666


Q ss_pred             cceecceeecCCCccccccCccccCCCCCCeEecC
Q 039201          166 LEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLG  200 (258)
Q Consensus       166 L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls  200 (258)
                      |+.    +++..+ +...-...+.+. +|+.+.+.
T Consensus        83 l~~----i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKN----IDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECE----EEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccc----cccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            666    555443 321122233443 55555554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.52  E-value=0.047  Score=25.66  Aligned_cols=14  Identities=29%  Similarity=0.342  Sum_probs=8.6

Q ss_pred             CCCCEEEccCCCCc
Q 039201           94 SFVRVIVLANNSYY  107 (258)
Q Consensus        94 ~~L~~L~Ls~n~l~  107 (258)
                      ++|++|++++|+++
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            46788888888876

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.67  E-value=0.011  Score=48.84  Aligned_cols=78  Identities=15%  Similarity=0.071  Sum_probs=37.9

Q ss_pred             cCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhh
Q 039201          137 LGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFI  215 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~  215 (258)
                      +....+-+.||++.|++- .+- .+..++.+..    ++++.|++. .+|..++....+..+++..|..+.       .|
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~r----l~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-------~p  104 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVR----LDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-------QP  104 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHH----HhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-------CC
Confidence            444555555566555543 122 3333444444    555555544 445555555555555555555443       34


Q ss_pred             hhhcCCCCCccc
Q 039201          216 TLLRNCSKLKTL  227 (258)
Q Consensus       216 ~~l~~l~~L~~L  227 (258)
                      .+.+..++++++
T Consensus       105 ~s~~k~~~~k~~  116 (326)
T KOG0473|consen  105 KSQKKEPHPKKN  116 (326)
T ss_pred             ccccccCCcchh
Confidence            444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.08  E-value=0.29  Score=25.43  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=15.9

Q ss_pred             CCCCCEEEccCCCCcCCCCcc
Q 039201           93 PSFVRVIVLANNSYYGEIPNE  113 (258)
Q Consensus        93 l~~L~~L~Ls~n~l~g~~p~~  113 (258)
                      +++|++|+|++|++. .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            468899999999987 66654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.08  E-value=0.29  Score=25.43  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=15.9

Q ss_pred             CCCCCEEEccCCCCcCCCCcc
Q 039201           93 PSFVRVIVLANNSYYGEIPNE  113 (258)
Q Consensus        93 l~~L~~L~Ls~n~l~g~~p~~  113 (258)
                      +++|++|+|++|++. .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            468899999999987 66654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.62  E-value=0.23  Score=25.30  Aligned_cols=15  Identities=40%  Similarity=0.523  Sum_probs=10.4

Q ss_pred             CCCCCeEeccCCcCC
Q 039201          243 LRNLQAPDLSENNLN  257 (258)
Q Consensus       243 l~~L~~L~Ls~N~l~  257 (258)
                      +++|+.|+|++|+++
T Consensus         1 ~~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    1 NPNLETLDLSNNQIT   15 (24)
T ss_dssp             -TT-SEEE-TSSBEH
T ss_pred             CCCCCEEEccCCcCC
Confidence            368999999999875

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.07  E-value=1.2  Score=23.38  Aligned_cols=15  Identities=47%  Similarity=0.707  Sum_probs=12.7

Q ss_pred             CCCCCeEeccCCcCC
Q 039201          243 LRNLQAPDLSENNLN  257 (258)
Q Consensus       243 l~~L~~L~Ls~N~l~  257 (258)
                      +.+|+.|+++.|+++
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            468999999999875

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=80.32  E-value=0.011  Score=54.52  Aligned_cols=180  Identities=22%  Similarity=0.198  Sum_probs=98.3

Q ss_pred             EEEEEcCCCCCcccCC----ccCCCCCCCCEEEccCCCCcCCCCcc----cCCC-CCCcEEc-CCCccC----CCCCccc
Q 039201           72 VTKLDLRSKSIGGFLS----PFVGNPSFVRVIVLANNSYYGEIPNE----VGCL-SRLETLI-GGYRLG----GKIPESL  137 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp----~~~~~l~~L~~L~Ls~n~l~g~~p~~----l~~l-~~L~~L~-~~n~l~----g~ip~~~  137 (258)
                      +..+.|.+|.+...-.    ..+.....|+.|++++|.+.+.--..    +... ..+++|+ ..+.++    +.+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5667777887754322    35677888888999998886421111    1111 3344454 333333    2344556


Q ss_pred             CCCCCCCEEEccccccc--cc--cc-ccc----CCCCcceecceeecCCCccccc----cCccccCCCC-CCeEecCCCc
Q 039201          138 GQLGSINYLILAENNFS--GT--LR-SIF----NISSLEFQSSETEKSKNRFTGK----LGIDFNSLIN-LARLNLGQKN  203 (258)
Q Consensus       138 ~~l~~L~~L~L~~n~l~--g~--~p-~~~----~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~-L~~L~ls~N~  203 (258)
                      .....++.++++.|.+.  |.  ++ .+.    ...++++    +.++++.++..    +-..+...+. +..+++..|.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~----L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLET----LKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHH----HhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence            66777888888888773  22  12 233    3566777    66666665411    1112333444 5557777777


Q ss_pred             CCccCCCCchhhhhhcCC-CCCccc--cccccccc----cchhhcCCCCCCeEeccCCcCC
Q 039201          204 LGIGTTSDLDFITLLRNC-SKLKTL--QYNQLTGT----IPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       204 l~g~~p~~~~~~~~l~~l-~~L~~L--~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +.+..-  -...+.+..+ ..++.+  +.|.++..    +...+..++.++.+.++.|.+.
T Consensus       245 l~d~g~--~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  245 LGDVGV--EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHH--HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            654310  0022333333 333333  66776643    3444556667778888777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-04
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-05
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-04

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 116/275 (42%), Gaps = 57/275 (20%)
Query: 34  LLAIKSQLQDPLGPTSSWKASLNLCQ--WTGVTCSH--RHPRVTKLDLRSKSIGGFLSPF 89
           LL IK  L +P    SSW  + + C   W GV C    +  RV  LDL   ++     P+
Sbjct: 11  LLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP---KPY 66
Query: 90  -----VGNPSFVRVIVLAN-NSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGS 142
                + N  ++  + +   N+  G IP  +  L++L  L I    + G IP+ L Q+ +
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 143 INYLILAENNFSGTL----RSIFNISSLEFQSSETEK------------------SKNRF 180
           +  L  + N  SGTL     S+ N+  + F  +                      S+NR 
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 181 TGKLGIDFNSLINLARLNL------GQKNLGIGTTSDLDFITLLRNCSKLK--------- 225
           TGK+   F +L NLA ++L      G  ++  G+  +   I L +N              
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 226 ----TLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
                L+ N++ GT+P    +L+ L + ++S NNL
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 75  LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
           LD+    + G++   +G+  ++ ++ L +N   G IP+EVG L  L  L +   +L G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 134 PESLGQLGSINYLILAENNFSGTLRSI 160
           P+++  L  +  + L+ NN SG +  +
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEM 723

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)
Query: 99  IVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL 157
           I L+NN   GEIP  +G L  L  L +      G IP  LG   S+ +L L  N F+GT+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 158 -RSIFNISS------------------------------LEFQSSETEKSKNRFTGKLGI 186
             ++F  S                               LEFQ   +E+  NR + +   
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPC 613
Query: 187 DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK---------LKTLQYNQLTGTIP 237
           +  S +     +    N G     D+ +  L     K         +  L +N ++G+IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 238 DTTGELRNLQAPDLSENNLNA 258
           D  G+LR L   DLS N L+ 
Sbjct: 674 DEVGDLRGLNILDLSSNKLDG 694

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 75  LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
           LD+    + G++   +G+  ++ ++ L +N   G IP+EVG L  L  L +   +L G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 134 PESLGQLGSINYLILAENNFSGTLRSI 160
           P+++  L  +  + L+ NN SG +  +
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEM 720

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)
Query: 99  IVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL 157
           I L+NN   GEIP  +G L  L  L +      G IP  LG   S+ +L L  N F+GT+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 158 -RSIFNISS------------------------------LEFQSSETEKSKNRFTGKLGI 186
             ++F  S                               LEFQ   +E+  NR + +   
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPC 610
Query: 187 DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK---------LKTLQYNQLTGTIP 237
           +  S +     +    N G     D+ +  L     K         +  L +N ++G+IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 238 DTTGELRNLQAPDLSENNLNA 258
           D  G+LR L   DLS N L+ 
Sbjct: 671 DEVGDLRGLNILDLSSNKLDG 691

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (303), Expect = 1e-32
 Identities = 68/282 (24%), Positives = 108/282 (38%), Gaps = 59/282 (20%)

Query: 29  NKTDH--LLAIKSQLQDPLGPTSSWKASLNLCQ--WTGVTCSHRH--PRVTKLDLRSKSI 82
           N  D   LL IK  L +P    SSW  + + C   W GV C       RV  LDL   ++
Sbjct: 4   NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 83  GG--FLSPFVGNPSFVRVIVLAN-------------------------NSYYGEIPNEVG 115
                +   + N  ++  + +                            +  G IP+ + 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 116 CLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSET 173
            +  L TL      L G +P S+  L ++  +    N  SG +  S  + S L    +  
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL---FTSM 179

Query: 174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNL------GIGTTSDLDFITLLRNC------ 221
             S+NR TGK+   F +L NLA ++L +  L        G+  +   I L +N       
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 222 --SKLKTLQY-----NQLTGTIPDTTGELRNLQAPDLSENNL 256
                K L       N++ GT+P    +L+ L + ++S NNL
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 20/189 (10%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGY--RLG 130
             LD    ++ G L P + +   +  I    N   G IP+  G  S+L T +     RL 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 131 GKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTGKLGIDFN 189
           GKIP +   L ++ ++ L+ N   G       +  + +        +KN     LG    
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL----AKNSLAFDLG-KVG 241

Query: 190 SLINLARLNLGQKNLGIGTTSDLDFI-TLLRNCSKLKTLQ--YNQLTGTIPDTTGELRNL 246
              NL  L+L    +  GT      +   L     L +L   +N L G IP   G L+  
Sbjct: 242 LSKNLNGLDLRNNRI-YGT------LPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293

Query: 247 QAPDLSENN 255
                + N 
Sbjct: 294 DVSAYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (302), Expect = 6e-31
 Identities = 52/267 (19%), Positives = 101/267 (37%), Gaps = 38/267 (14%)

Query: 21  LLSTRTHSNKTDH--LLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLR 78
             ++ + S   +   L++ K  L D       W ++ N C + GVTC      VT +DL 
Sbjct: 2   FQASPSQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRDDK--VTSIDLS 58

Query: 79  SKSI---GGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIP 134
           SK +      +S  + + + +  + L+N+   G +     C + L +L +    L G + 
Sbjct: 59  SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVT 117

Query: 135 E--SLGQLGSINYLILAENNFSGT--LRSIFNISSLEFQSSETEKSKNRFTGKL---GID 187
              SLG    + +L ++ N       +     ++SLE        S N  +G      + 
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL----SANSISGANVVGWVL 173

Query: 188 FNSLINLARLNLGQKNLG----IGTTSDLDFITL-----------LRNCSKLKT--LQYN 230
            +    L  L +    +     +    +L+F+ +           L +CS L+   +  N
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233

Query: 231 QLTGTIPDTTGELRNLQAPDLSENNLN 257
           +L+G           L+  ++S N   
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFV 260

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 34/187 (18%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGG 131
            +L L++    G + P + N S +  + L+ N   G IP+ +G LS+L  L +    L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 132 KIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTGKLGIDFNS 190
           +IP+ L  + ++  LIL  N+ +G +   + N ++L + S     S NR TG++      
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS----LSNNRLTGEIPKWIGR 512

Query: 191 LINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPD 250
           L NLA L L                              N  +G IP   G+ R+L   D
Sbjct: 513 LENLAILKLSN----------------------------NSFSGNIPAELGDCRSLIWLD 544

Query: 251 LSENNLN 257
           L+ N  N
Sbjct: 545 LNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 33/212 (15%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEV-GCLSRLETL-IGGYRLG 130
             L++ S    G + P       ++ + LA N + GEIP+ + G    L  L + G    
Sbjct: 250 KLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 131 GKIPESLGQLGSINYLILAENNFSGTL--RSIFNISSLEFQSSETEKSKNRFTGKLGIDF 188
           G +P   G    +  L L+ NNFSG L   ++  +  L+        S N F+G+L    
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL----SFNEFSGELPESL 363

Query: 189 -NSLINLARLNLGQ--------KNLGIGTTSDLDFITL------------LRNCSKLKTL 227
            N   +L  L+L           NL     + L  + L            L NCS+L +L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 228 Q--YNQLTGTIPDTTGELRNLQAPDLSENNLN 257
              +N L+GTIP + G L  L+   L  N L 
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.3 bits (199), Expect = 2e-17
 Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 21/195 (10%)

Query: 70  PRVTKLDLRSKSIGGFLSP---FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IG 125
             +  LDL + SI G              ++ + ++ N   G++   V     LE L + 
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208

Query: 126 GYRLGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTGKL 184
                  IP  LG   ++ +L ++ N  SG   R+I   + L+  +     S N+F G  
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI----SSNQFVGP- 262

Query: 185 GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE 242
            I    L +L  L+L +     G   D     L   C  L  L    N   G +P   G 
Sbjct: 263 -IPPLPLKSLQYLSLAENKFT-GEIPD----FLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 243 LRNLQAPDLSENNLN 257
              L++  LS NN +
Sbjct: 317 CSLLESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 2e-16
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 28/205 (13%)

Query: 75  LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
           + L +  + G +  ++G    + ++ L+NNS+ G IP E+G    L  L +      G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 134 PESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLI 192
           P ++ +        +A N  +G     I N    +        +   F G      N L 
Sbjct: 555 PAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAG--NLLEFQGIRSEQLNRLS 608

Query: 193 NLARLNLGQKNL------GIGTTSDLDFITL------------LRNCSKLKTL--QYNQL 232
                N+  +               + F+ +            + +   L  L   +N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 233 TGTIPDTTGELRNLQAPDLSENNLN 257
           +G+IPD  G+LR L   DLS N L+
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 30/214 (14%)

Query: 70  PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEV-GCLSRLETLIGGY- 127
             +T LDL      G + PF G+ S +  + L++N++ GE+P +    +  L+ L   + 
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 128 RLGGKIPESLGQL-GSINYLILAENNFSGTL-RSIFNI--SSLEFQSSETEKSKNRFTGK 183
              G++PESL  L  S+  L L+ NNFSG +  ++     ++L+          N FTGK
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL----QNNGFTGK 409

Query: 184 LGIDFNSLINLARLNLGQKNL------GIGTTSDLDFITLLRN------------CSKLK 225
           +    ++   L  L+L    L       +G+ S L  + L  N               L+
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469

Query: 226 TLQ--YNQLTGTIPDTTGELRNLQAPDLSENNLN 257
           TL   +N LTG IP       NL    LS N L 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 6e-10
 Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 40/171 (23%)

Query: 75  LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKI 133
                    G  S  +   S      + +  Y G           +  L +    L G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 134 PESLGQLGSINYLILAENNFSGTL-RSIFNISSLE---FQSSETEKSKNRFTGKLGIDFN 189
           P+ +G +  +  L L  N+ SG++   + ++  L            S N+  G++    +
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL-------SSNKLDGRIPQAMS 701

Query: 190 SLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTT 240
           +L  L  ++L                              N L+G IP+  
Sbjct: 702 ALTMLTEIDLS----------------------------NNNLSGPIPEMG 724

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 72  VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLG 130
           +  LD+    + G++   +G+  ++ ++ L +N   G IP+EVG L  L  L +   +L 
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

Query: 131 GKIPESLGQLGSINYLILAENNFSG 155
           G+IP+++  L  +  + L+ NN SG
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSG 718

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 27/251 (10%), Positives = 68/251 (27%), Gaps = 22/251 (8%)

Query: 26  THSNKTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGF 85
           T        L+  ++             +LN   W+      +       +      G  
Sbjct: 13  TDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQ 72

Query: 86  LSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGG----KIPESLGQL 140
               + +   V  + L      G +P+ +G L+ LE L +G +          P+ +   
Sbjct: 73  PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132

Query: 141 GSINYLILAENNFSGTLRSIFNISSLEFQSSETEK-SKNRFTGKLGIDFNSLINLARLNL 199
            S         ++  T   +      +F     +  + +     +       +   ++  
Sbjct: 133 MSDEQKQKMRMHYQKT--FVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 200 GQKNLG-----IGTTSDLDFITLLRN---------CSKLKTLQYNQLTGTIPDTTGELRN 245
              N+      +   + L    +  +           + +  +Y Q   T       L++
Sbjct: 191 LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250

Query: 246 LQAPDLSENNL 256
           L   ++     
Sbjct: 251 LTDVEVYNCPN 261

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 18/178 (10%), Positives = 50/178 (28%), Gaps = 21/178 (11%)

Query: 101 LANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGT-LRS 159
           + ++     I        +   +         + +++ +L  +    +  + F    +  
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICE 225

Query: 160 IFNISSLEFQSSETEK---------------SKNRFTGKLGIDFNSLINLARLNLGQKNL 204
            +   + E+      +                      KL     +L  +  +N+     
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

Query: 205 --GIGTTSDLDFITLLRNCSKLKTL--QYNQL-TGTIPDTTGELRNLQAPDLSENNLN 257
             G     D   +       K++ +   YN L T  +  +  +++ L   +   N L 
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 34/219 (15%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNS--------YYGEIPNEVGCLSRLETLI 124
           T +++ +      L  F+     +++I +A N            +   +     +++ + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 125 GGY-RL-GGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEF-------------- 168
            GY  L    +  SL ++  +  L    N   G L +  +   L                
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371

Query: 169 ---QSSETEK---SKNRFTG-KLGIDFNSLINLARLNLGQKNL-GIGTTSDLDFITLLRN 220
               + + E    + N+        D  S+  ++ ++     +  +   +          
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 221 CSKLKT--LQYNQLTGTIPDTTGELRNLQAPDLSENNLN 257
              + +  L  NQ++    +       L + +L  N L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 16/160 (10%), Positives = 47/160 (29%), Gaps = 15/160 (9%)

Query: 108 GEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSL 166
             +         + ++ +   ++     E       ++ + L  N  +   ++     + 
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 167 EFQSSETEK----SKNRFTG-KLGIDFNSLINLARLNLGQKNL-----GIGTTSDLDFIT 216
            F+++          N+ T         +L  L  ++L   +          +S L    
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFG 542

Query: 217 LLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
           +       +  Q N+     P+      +L    +  N++
Sbjct: 543 IRNQ----RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 26/196 (13%), Positives = 58/196 (29%), Gaps = 20/196 (10%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNS-------YYGEIPNEVGCLSRLETLIG 125
           + ++L +  I  F        S +  I L  N           +          L ++  
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 126 GY-RLGGKIPESL--GQLGSINYLILAENNFSGTLRSIFNISSLEF--QSSETEKSKNRF 180
            + +L   + +      L  +  + L+ N+FS       N S+L+     ++ +   NR 
Sbjct: 496 RFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 181 TGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTT 240
             +         +L +L +G  ++          I++L        ++ N          
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLD-------IKDNPNISIDLSYV 607

Query: 241 GELRNLQAPDLSENNL 256
                     L  +  
Sbjct: 608 CPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 17/162 (10%)

Query: 109 EIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSG-----TLRSIFN 162
                 G   +L +L +   ++        G    +  L  A N           +S+  
Sbjct: 344 GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403

Query: 163 ISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCS 222
           +S+++F  +E      +    L       IN++ +NL    +   +    +  +     S
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI---SKFPKELFSTGSPLS 460

Query: 223 KLKTLQYNQLTG-------TIPDTTGELRNLQAPDLSENNLN 257
            +  L  N LT           +       L + DL  N L 
Sbjct: 461 SIN-LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 25/196 (12%), Positives = 46/196 (23%), Gaps = 25/196 (12%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGG 131
             +   +                           Y         L  L  + +       
Sbjct: 451 QIIYFANSPFTYD-----NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 132 KIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEK------SKNRFTG-KL 184
           ++P+ L  L  +  L +A N      +   + + L        K        N       
Sbjct: 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565

Query: 185 GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE 242
                 ++ L  L+     +          +       KL  L   YNQ+   IP+    
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRH--------LEAFGTNVKLTDLKLDYNQIE-EIPEDFCA 616

Query: 243 -LRNLQAPDLSENNLN 257
               ++    S N L 
Sbjct: 617 FTDQVEGLGFSHNKLK 632

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 32/243 (13%), Positives = 67/243 (27%), Gaps = 50/243 (20%)

Query: 37  IKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFV 96
             S   +    + +W  +  L  W                             + N   V
Sbjct: 288 YYSGTINNTIHSLNWNFNKELDMWGDQPGV----------------------DLDNNGRV 325

Query: 97  RVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSG 155
             + LA     G +P+ +G L+ L+ L  G +           +  + +     ++    
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 156 TLRSIFNISSLEFQSSE-TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDF 214
             + +F         S+  + + NR      I  +S I+L    +G     I   S    
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK--- 442

Query: 215 ITLLRNCSKLKTL---------------------QYNQLTGTIPDTTGELRNLQAPDLSE 253
              ++  +KL+ +                      Y +       +   L++L   +L  
Sbjct: 443 --AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 254 NNL 256
              
Sbjct: 501 CPN 503

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 7/157 (4%)

Query: 104 NSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFN 162
           + +  +   ++    R+  L + G+   G++P+++GQL  +  L    ++ + + R   +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 163 ISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARL--NLGQKNLGIGTTSDLDFITLLRN 220
                  S E +        K+ +D++  +NL+ L  +   +N  +        I+L   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 221 CSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLN 257
                    N++T  I      L  LQ    + +   
Sbjct: 429 Q---IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFT 461

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 22/206 (10%), Positives = 58/206 (28%), Gaps = 23/206 (11%)

Query: 70  PRVTKLDLRSKSIGGFLSPF-VGNPSFVRVIVLANNSYYGEIPNEVGC------LSRLET 122
            +V  L      +    + F   +   +  +  + N   G     + C           T
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKGINAST 677

Query: 123 L-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEK----SK 177
           + +    +     E       I+ +IL+ N  +    +        ++++          
Sbjct: 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 178 NRFTG-KLGIDFNSLINLARLNLGQKNL-----GIGTTSDLDFITLLRNCSKLKTLQYNQ 231
           N+ T         +L  L+ +++              +S L    +       +  + N+
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ----RDAEGNR 793

Query: 232 LTGTIPDTTGELRNLQAPDLSENNLN 257
           +    P       +L    +  N++ 
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 44/203 (21%)

Query: 66  SHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNS-------YYGEIPNEVGCLS 118
            ++    + + L    I  F +      S +  I+L+NN                     
Sbjct: 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728

Query: 119 RLETL-IGGYRLGGKIPESL--GQLGSINYLILAENNFSGTLRSIFNISSLEF--QSSET 173
            L T+ +   +L   + +      L  ++ + ++ N FS       N S L+      + 
Sbjct: 729 LLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787

Query: 174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLT 233
           +   NR   +      +  +L +L +G                             N + 
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIG----------------------------SNDIR 819

Query: 234 GTIPDTTGELRNLQAPDLSENNL 256
             + +       L   D+++N  
Sbjct: 820 -KVDEKL--TPQLYILDIADNPN 839

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 41/213 (19%), Positives = 62/213 (29%), Gaps = 14/213 (6%)

Query: 55  LNLCQWTGVTCSH-RHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE 113
            +L   T  T     H  +  L+L    I    S        + V+ L  N    E+  +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 114 V-GCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSS 171
               L  +  + +   +       S   + S+  L+L          S      L     
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL----R 480

Query: 172 ETEK---SKNRFTGKLGIDFNSLINLARLNLGQKNLG--IGTTSDLDFITLLRNCSKLKT 226
                  S N            L  L  L+L   NL       +    I  L+  S L  
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540

Query: 227 L--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257
           L  + N       +   +L  L+  DL  NNLN
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 12/190 (6%)

Query: 72  VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLG 130
           +T L+L    +    +      S +  + +  N+     P     L  L+ L +    L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 131 GKIPESLGQLGSINYLILAENNFSGTLRSIF-NISSLEFQSSETEKSKNRFTGKLGIDFN 189
               ++     ++  L L  N+      + F    +L         S N  +        
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL----SHNGLSSTKLGTQV 142

Query: 190 SLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT--LQYNQLTGTIPDTTGELRNLQ 247
            L NL  L L    +    + +LD        S LK   L  NQ+    P     +  L 
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDI----FANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 248 APDLSENNLN 257
              L+   L 
Sbjct: 199 GLFLNNVQLG 208

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 24/201 (11%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVG---CLSRLETL-IGGYR 128
            KL+L S  I  F          +  + L N      +  ++      + +  L +   +
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 129 LGGKIPESLGQLGSIN--YLILAENNFSGTLRSIF----NISSLEFQSSETEKSKNRFTG 182
           L      +   L   N   L L+ NN +      F     +              N    
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL-------EYNNIQH 286

Query: 183 KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITL----LRNCSKLKT--LQYNQLTGTI 236
                 + L N+  LNL +++    + S      +     +    L+   ++ N + G  
Sbjct: 287 LFSHSLHGLFNVRYLNL-KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345

Query: 237 PDTTGELRNLQAPDLSENNLN 257
            +    L NL+   LS +  +
Sbjct: 346 SNMFTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 38/225 (16%)

Query: 68  RHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL---- 123
           +   +T LDL   ++    +        +    L  N+      + +  L  +  L    
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305

Query: 124 ------IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIF---------------- 161
                 I    L      S   L  + +L + +N+  G   ++F                
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 162 ---NISSLEFQSSETEK------SKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL 212
               +++  F S           +KN+ +      F+ L +L  L+LG  N  IG     
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL-N-EIGQELTG 423

Query: 213 DFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSENNLN 257
                L N  ++  L YN+      ++   + +LQ   L    L 
Sbjct: 424 QEWRGLENIFEIY-LSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 19/199 (9%)

Query: 70  PRVTKLDLRSKSIGGFLSP--FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGG 126
             +  LDL    IG  L+   + G  + +  I L+ N Y     N    +  L+ L +  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 127 YRLGG--KIPESLGQLGSINYLILAENNFSGTLRSIF----NISSLEFQSSE-TEKSKNR 179
             L      P     L ++  L L+ NN +     +      +  L+ Q +      K+ 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 180 FTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIP 237
             G        L +L  LNL                 + ++  +LK +    N L     
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVE------VFKDLFELKIIDLGLNNLNTLPA 577

Query: 238 DTTGELRNLQAPDLSENNL 256
                  +L++ +L +N +
Sbjct: 578 SVFNNQVSLKSLNLQKNLI 596

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 39/220 (17%)

Query: 70  PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYR 128
           P +  L+L+   +           + +  + L +NS      N       L TL +    
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 129 LGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEK---SKNRFTGKLG 185
           L      +  QL ++  L+L+ N          +I +     S  +K   S N+      
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN----SSLKKLELSSNQIKEFSP 188

Query: 186 IDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL------------------ 227
             F+++  L  L L    L     S  + + L    + ++ L                  
Sbjct: 189 GCFHAIGRLFGLFLNNVQL---GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 228 ----------QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257
                      YN L     D+   L  L+   L  NN+ 
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 35/198 (17%), Positives = 59/198 (29%), Gaps = 17/198 (8%)

Query: 70  PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANN--SYYGEIPNEVGCLSRLETL-IGG 126
             + ++ L                  ++ ++L           P+    L  L  L +  
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 127 YRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEK-----SKNRFT 181
             +     + L  L  +  L L  NN +   +       + F    +         N F 
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 182 GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT--LQYNQLTGTIPDT 239
                 F  L  L  ++LG  NL     + L   ++  N   LK+  LQ N +T      
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNL-----NTLPA-SVFNNQVSLKSLNLQKNLITSVEKKV 603

Query: 240 -TGELRNLQAPDLSENNL 256
                RNL   D+  N  
Sbjct: 604 FGPAFRNLTELDMRFNPF 621

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 8/191 (4%)

Query: 70  PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYR 128
                LDL    +    S    +   ++V+ L+              LS L TLI  G  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 129 LGGKIPESLGQLGSINYLILAENNFSGTL-RSIFNISSLEFQSSETEKSKNRFTG-KLGI 186
           +      +   L S+  L+  E N +      I ++ +L+  +     + N     KL  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV----AHNLIQSFKLPE 143

Query: 187 DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNL 246
            F++L NL  L+L    +     +DL  +  +   +    L  N +    P    E+  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL 202

Query: 247 QAPDLSENNLN 257
               L  N  +
Sbjct: 203 HKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 45/213 (21%), Positives = 74/213 (34%), Gaps = 21/213 (9%)

Query: 54  SLNLCQWTGVTCSHRHPRVTKLDLRSKSIG--GFLSPFVGNPSFVRVIVLANNSYYGEIP 111
           +    +          P +  LDL    +   G  S      + ++ + L+ N     + 
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 112 NEVGCLSRLETLIGGY-RLGGKIPES-LGQLGSINYLILAENNFSGTLRSIF-NISSLEF 168
           +    L +LE L   +  L      S    L ++ YL ++  +       IF  +SSLE 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 169 QSSETEKSKNRFTGKLGID-FNSLINLARLNLGQKNL-GIGTTSDLDFITLLRNCSKLKT 226
                  + N F      D F  L NL  L+L Q  L  +  T+         + S L+ 
Sbjct: 450 LKM----AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-------FNSLSSLQV 498

Query: 227 L--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257
           L   +N            L +LQ  D S N++ 
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 14/198 (7%)

Query: 70  PRVTKLDLRSKSIGGF-LSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL----- 123
             + +L++    I  F L  +  N + +  + L++N        ++  L ++  L     
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 124 IGGYRLGGKIPESLGQLGSINYLILAENNFSGTL--RSIFNISSLEFQSSETEKSKNRFT 181
           +    +    P +  ++  ++ L L  N  S  +    I  ++ LE       + +N   
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN-EG 241

Query: 182 GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQ--YNQLTGTIPDT 239
                D ++L  L  L + +  L        D I L    + + +       +      +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 240 TGELRNLQAPDLSENNLN 257
                  Q  +L      
Sbjct: 302 --YNFGWQHLELVNCKFG 317

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 21/199 (10%)

Query: 70  PRVTKLDLRSKSIGGFLSP-FVGNPSFVRVIVLANN--SYYGEIPNEVGCLSRLETL-IG 125
           P +T L ++  +    L    + N   +R + L+++          ++  LS L++L + 
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384

Query: 126 GYRLGGKIPESLGQLGSINYLILAENNFS-----GTLRSIFNISSLEFQSSETEKSKNRF 180
                    E+  +   +  L LA             +++  +  L         S +  
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL-------SHSLL 437

Query: 181 TGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPD 238
                  F+ L  L  LNL   +       ++     L+   +L+ L   +  L+     
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHF---PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 239 TTGELRNLQAPDLSENNLN 257
               L+ +   DLS N L 
Sbjct: 495 AFTSLKMMNHVDLSHNRLT 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 7/191 (3%)

Query: 70  PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYR 128
             +  L      I       + N   +  + L +N        +     +L+ L      
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 129 LGGKIPESLGQLGSIN--YLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGI 186
           +     E +  L       L L  N+ +G     F+ +  +  +     ++N      G+
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG--GTQNLLVIFKGL 222

Query: 187 DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNL 246
             +++ +L       +++     S   F  L     +   LQ +       +T      L
Sbjct: 223 KNSTIQSLWLGTF--EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 247 QAPDLSENNLN 257
           Q  DL+  +L+
Sbjct: 281 QELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 18/199 (9%)

Query: 68  RHPRVTKLDLRSKSIGGFLSPFVGNPSFV--RVIVLANNSYYGEIPN--EVGCLSRLETL 123
                  L+         +   + N +     +    +       P   E  C   +E++
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 124 -IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTG 182
            +  +        +      +  L L   + S     +  +S+L+    +   S N+F  
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLK----KLVLSANKFEN 315

Query: 183 KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT--GTIPD 238
              I  ++  +L  L++ + N                N   L+ L   ++ +        
Sbjct: 316 LCQISASNFPSLTHLSI-KGNTKRLELGTGCL----ENLENLRELDLSHDDIETSDCCNL 370

Query: 239 TTGELRNLQAPDLSENNLN 257
               L +LQ+ +LS N   
Sbjct: 371 QLRNLSHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/172 (14%), Positives = 50/172 (29%), Gaps = 20/172 (11%)

Query: 93  PSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAEN 151
           P+    +  + N            L  L  L +   ++     ++      ++ L+L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 152 NFSGTLRSIF----NISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG 207
                  +       +  L F        +   +    I  ++   L  L LG  ++   
Sbjct: 92  PLIFMAETALSGPKALKHLFF-------IQTGISSIDFIPLHNQKTLESLYLGSNHI--- 141

Query: 208 TTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN 257
             S +          KLK L  Q N +     +    L+      L+ N  +
Sbjct: 142 --SSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 17/195 (8%)

Query: 69  HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEV-GCLSRLETL-IGG 126
              +  LDL         + F+G    ++ +   +++            L +L  L I  
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEE-LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 127 YRLGGKIPESLGQLGSINYLILAENNFSGTLRSIF--NISSLEFQSSETEKSKNRFTGKL 184
                        L S+N L +A N+F     S    N ++L F       SK +     
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL----SKCQLEQIS 489

Query: 185 GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE 242
              F++L  L  LN+   NL       LD  +       L TL   +N++  +       
Sbjct: 490 WGVFDTLHRLQLLNMSHNNL-----LFLDS-SHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 243 LRNLQAPDLSENNLN 257
            ++L   +L+ N++ 
Sbjct: 544 PKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 23/197 (11%)

Query: 70  PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANN--SYYGEIPNEVGCLSRLETLIGGY 127
           P +  L L            V  PS +  + L+ N  S+ G         + L  L   +
Sbjct: 328 PFLKSLTLTMNKGS-ISFKKVALPS-LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 128 RLGGKIPESLGQLGSINYLILAENNFS-----GTLRSIFNISSLEFQSSETEKSKNRFTG 182
                +  +   L  + +L    +            S+  +  L+        S      
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI-------SYTNTKI 438

Query: 183 KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTT 240
                F  L +L  L +   N     T       +  N + L  L     QL        
Sbjct: 439 DFDGIFLGLTSLNTLKM-AGNSFKDNTLS----NVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 241 GELRNLQAPDLSENNLN 257
             L  LQ  ++S NNL 
Sbjct: 494 DTLHRLQLLNMSHNNLL 510

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 15/196 (7%)

Query: 73  TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYG-EIPNEVGCLSRLETL-IGGYRLG 130
             L      +    S  +G    ++ + +A+N  +  ++P     L+ L  + +    + 
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 131 GKIPESLGQLGSIN----YLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKL-G 185
                 L  L         L ++ N         F    L     E     N  +  +  
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH----ELTLRGNFNSSNIMK 222

Query: 186 IDFNSLINLARLNLGQ---KNLGIGTTSDLDFITLLRNCSKLK-TLQYNQLTGTIPDTTG 241
               +L  L    L     K+       +   +  L + +  +  L Y            
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 242 ELRNLQAPDLSENNLN 257
            L N+ A  L+  ++ 
Sbjct: 283 CLANVSAMSLAGVSIK 298

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 109 EIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLE 167
           + P++   LS L+ + I    L  ++P+++ Q   +  L LA N       SI +++ L 
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 168 F-----QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL-----GIGTTSDLDFITL 217
                     TE  +   +     +   L+NL  L L    +      I           
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA---------- 203

Query: 218 LRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL 256
             N   LK+L  + + L+  +      L  L+  DL     
Sbjct: 204 --NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.77
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.77
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.01
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.65
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.12
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.34

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=9.8e-38  Score=269.75  Aligned_cols=218  Identities=27%  Similarity=0.415  Sum_probs=185.6

Q ss_pred             CChHH--HHHHHHHhCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEEcCCCCCcc--cCCccCCCCCCCCEE
Q 039201           28 SNKTD--HLLAIKSQLQDPLGPTSSWKASLNLCQ--WTGVTCSHRH--PRVTKLDLRSKSIGG--FLSPFVGNPSFVRVI   99 (258)
Q Consensus        28 ~~~~~--aL~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~l~g--~lp~~~~~l~~L~~L   99 (258)
                      |.+.|  ||++||+++.+|. .+.+|..+.+||.  |.||+|+...  ++|++|+++++++.|  .+|+.+.++++|++|
T Consensus         3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L   81 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCee
Confidence            45444  9999999998876 6789988889998  9999998654  599999999999999  899999999999999


Q ss_pred             EccC-CCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecC
Q 039201          100 VLAN-NSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKS  176 (258)
Q Consensus       100 ~Ls~-n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~  176 (258)
                      ++++ |.+.+.+|..++++++|++|+ ++|.+++.+|..+.++++|++|++++|.+++.+| .+.++++|++    ++++
T Consensus        82 ~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~----L~L~  157 (313)
T 1ogq_A           82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG----ITFD  157 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE----EECC
T ss_pred             eCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe----EECc
Confidence            9995 999999999999999999999 8899999999999999999999999999999999 8999999999    9999


Q ss_pred             CCccccccCccccCCC-CCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccC
Q 039201          177 KNRFTGKLGIDFNSLI-NLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSE  253 (258)
Q Consensus       177 ~n~~~g~ip~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~  253 (258)
                      +|+++|.+|..++.++ +|++|++++|.+++.+|      ..++.++ |++|  ++|++++.+|..+..+++|++|++++
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            9999999999999998 99999999999998754      4444443 5544  56666655565555555666666655


Q ss_pred             CcCC
Q 039201          254 NNLN  257 (258)
Q Consensus       254 N~l~  257 (258)
                      |+++
T Consensus       231 N~l~  234 (313)
T 1ogq_A          231 NSLA  234 (313)
T ss_dssp             SEEC
T ss_pred             Ccee
Confidence            5554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-34  Score=276.24  Aligned_cols=212  Identities=26%  Similarity=0.358  Sum_probs=151.2

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCCccc---CC-------------------
Q 039201           30 KTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGF---LS-------------------   87 (258)
Q Consensus        30 ~~~aL~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~---lp-------------------   87 (258)
                      |++||++||+++.||. .+.+|..+++||.|+||+|+  .++|++|+++++++.|.   +|                   
T Consensus        13 ~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~   89 (768)
T 3rgz_A           13 EIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI   89 (768)
T ss_dssp             HHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCE
T ss_pred             HHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCc
Confidence            3449999999999887 88999988899999999998  35999999999999887   54                   


Q ss_pred             ----ccCCCCCCCCEEEccCCCCcCCCCc--ccCCCCCCcEEc-CCCccCCCCCccc-CCCCCCCEEEccccccccccc-
Q 039201           88 ----PFVGNPSFVRVIVLANNSYYGEIPN--EVGCLSRLETLI-GGYRLGGKIPESL-GQLGSINYLILAENNFSGTLR-  158 (258)
Q Consensus        88 ----~~~~~l~~L~~L~Ls~n~l~g~~p~--~l~~l~~L~~L~-~~n~l~g~ip~~~-~~l~~L~~L~L~~n~l~g~~p-  158 (258)
                          +.++.+++|++|+|++|.+.|.+|.  .++++++|++|+ ++|.+.+.+|..+ .++++|++|++++|++++..| 
T Consensus        90 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  169 (768)
T 3rgz_A           90 NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV  169 (768)
T ss_dssp             EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred             CCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence                4566777777777777777777776  777777777777 6677777777665 677777777777777777666 


Q ss_pred             c---ccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccc
Q 039201          159 S---IFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT  233 (258)
Q Consensus       159 ~---~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~  233 (258)
                      .   +.++++|++    +++++|++++.+|.  +.+++|++|++++|.+++.+|      . ++++++|++|  ++|+++
T Consensus       170 ~~~~~~~l~~L~~----L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~------~-l~~l~~L~~L~Ls~n~l~  236 (768)
T 3rgz_A          170 GWVLSDGCGELKH----LAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP------F-LGDCSALQHLDISGNKLS  236 (768)
T ss_dssp             HHHHTTCCTTCCE----EECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCC------B-CTTCCSCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCE----EECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCc------c-cccCCCCCEEECcCCcCC
Confidence            4   566666666    55555555554443  455566666666666655422      2 5555555555  566666


Q ss_pred             cccchhhcCCCCCCeEeccCCcCC
Q 039201          234 GTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       234 g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      |.+|..++.+++|++|++++|+++
T Consensus       237 ~~~~~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          237 GDFSRAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             SCHHHHTTTCSSCCEEECCSSCCE
T ss_pred             CcccHHHhcCCCCCEEECCCCccc
Confidence            666666666666666666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-34  Score=271.62  Aligned_cols=212  Identities=23%  Similarity=0.317  Sum_probs=173.8

Q ss_pred             HHHHHHHHHhCCCCCCC-C-------CCCCCCCCCccc---cceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEE
Q 039201           31 TDHLLAIKSQLQDPLGP-T-------SSWKASLNLCQW---TGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVI   99 (258)
Q Consensus        31 ~~aL~~~~~~~~~~~~~-~-------~~w~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L   99 (258)
                      .+||.++++++.++.+. .       .+|..+.++|.|   .||+|+.. ++|++|+|+++++.|.+|++++++++|++|
T Consensus        32 ~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L  110 (636)
T 4eco_A           32 YLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVL  110 (636)
T ss_dssp             HHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEE
T ss_pred             HHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEE
Confidence            33999999999655332 2       379988999999   99999876 599999999999999999999999999999


Q ss_pred             EccCCCC-------------------------------------------------------------------------
Q 039201          100 VLANNSY-------------------------------------------------------------------------  106 (258)
Q Consensus       100 ~Ls~n~l-------------------------------------------------------------------------  106 (258)
                      +|++|.+                                                                         
T Consensus       111 ~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~  190 (636)
T 4eco_A          111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ  190 (636)
T ss_dssp             ESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTC
T ss_pred             ECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhcc
Confidence            9999843                                                                         


Q ss_pred             -----cCCCCcccCCCCCCcEEc-CCCccCCC-----------------CCcccC--CCCCCCEEEccccccccccc-cc
Q 039201          107 -----YGEIPNEVGCLSRLETLI-GGYRLGGK-----------------IPESLG--QLGSINYLILAENNFSGTLR-SI  160 (258)
Q Consensus       107 -----~g~~p~~l~~l~~L~~L~-~~n~l~g~-----------------ip~~~~--~l~~L~~L~L~~n~l~g~~p-~~  160 (258)
                           +| +|+.++++++|++|+ ++|.++|.                 +|+.++  ++++|++|++++|++.|.+| .+
T Consensus       191 ~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l  269 (636)
T 4eco_A          191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL  269 (636)
T ss_dssp             CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred             ccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence                 34 788888899999998 78888886                 888888  89999999999998888888 88


Q ss_pred             cCCCCcceecceeecCCCc-ccc-ccCccccCC------CCCCeEecCCCcCCccCCCCchhhh--hhcCCCCCccc--c
Q 039201          161 FNISSLEFQSSETEKSKNR-FTG-KLGIDFNSL------INLARLNLGQKNLGIGTTSDLDFIT--LLRNCSKLKTL--Q  228 (258)
Q Consensus       161 ~~l~~L~~l~l~L~l~~n~-~~g-~ip~~~~~l------~~L~~L~ls~N~l~g~~p~~~~~~~--~l~~l~~L~~L--~  228 (258)
                      +++++|++    |++++|+ ++| .+|..++++      ++|++|++++|.++ .      +|.  .++++++|++|  +
T Consensus       270 ~~l~~L~~----L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~------ip~~~~l~~l~~L~~L~L~  338 (636)
T 4eco_A          270 KALPEMQL----INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T------FPVETSLQKMKKLGMLECL  338 (636)
T ss_dssp             TTCSSCCE----EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S------CCCHHHHTTCTTCCEEECC
T ss_pred             hcCCCCCE----EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c------cCchhhhccCCCCCEEeCc
Confidence            88889998    8888888 888 888888776      88888888888887 4      345  67777777766  6


Q ss_pred             ccccccccchhhcCCCCCCeEeccCCcC
Q 039201          229 YNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      +|+++|.+| .++.+++|++|++++|++
T Consensus       339 ~N~l~g~ip-~~~~l~~L~~L~L~~N~l  365 (636)
T 4eco_A          339 YNQLEGKLP-AFGSEIKLASLNLAYNQI  365 (636)
T ss_dssp             SCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred             CCcCccchh-hhCCCCCCCEEECCCCcc
Confidence            777777777 666666666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.98  E-value=9e-33  Score=240.22  Aligned_cols=222  Identities=18%  Similarity=0.197  Sum_probs=155.4

Q ss_pred             CChHHHHHHHHHhC-CCCCCCCCCC----CCCCCCccccceeeCC--------CCCcEEEEEcCCCCCcccCCccCCCCC
Q 039201           28 SNKTDHLLAIKSQL-QDPLGPTSSW----KASLNLCQWTGVTCSH--------RHPRVTKLDLRSKSIGGFLSPFVGNPS   94 (258)
Q Consensus        28 ~~~~~aL~~~~~~~-~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~l~g~lp~~~~~l~   94 (258)
                      .++.+||++||+.+ .++.+....|    ....++|.|.|+.|..        ..++|+.|+++++++. .+|+.++.++
T Consensus        26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~  104 (328)
T 4fcg_A           26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS  104 (328)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGT
T ss_pred             chHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCC
Confidence            45666999999998 6776666788    4456899999999952        3348899999999887 7788888888


Q ss_pred             CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccC---------C
Q 039201           95 FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFN---------I  163 (258)
Q Consensus        95 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~---------l  163 (258)
                      +|++|++++|.++ .+|..++++++|++|+ ++|.+. .+|+.++++++|++|++++|++.+.+| .++.         +
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            9999999998888 8888888888888888 667777 778888888888888888877777777 5543         7


Q ss_pred             CCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc------------------hhhhhhcCCCCCc
Q 039201          164 SSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL------------------DFITLLRNCSKLK  225 (258)
Q Consensus       164 ~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~------------------~~~~~l~~l~~L~  225 (258)
                      ++|++    |++++|+++ .+|..++.+++|++|++++|.+++ +|..+                  .+|..++++++|+
T Consensus       183 ~~L~~----L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          183 VNLQS----LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             TTCCE----EEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             CCCCE----EECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            77777    555555555 555555555555555555555554 11100                  0233445555555


Q ss_pred             cc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          226 TL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       226 ~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      +|  ++|++.+.+|..++.+++|++|++++|++.|
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS  291 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence            55  5556666666666666666666666665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1.3e-32  Score=265.54  Aligned_cols=207  Identities=20%  Similarity=0.278  Sum_probs=155.8

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCC-----CCC--ccc------------cceeeCCCCCcEEEEEcCCCCCcccCCccCC
Q 039201           31 TDHLLAIKSQLQDPLGPTSSWKAS-----LNL--CQW------------TGVTCSHRHPRVTKLDLRSKSIGGFLSPFVG   91 (258)
Q Consensus        31 ~~aL~~~~~~~~~~~~~~~~w~~~-----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~   91 (258)
                      .+||++||+++.+|     +|..+     .++  |.|            .||+|+.. ++|+.|+|+++++.|.+|+.++
T Consensus       271 ~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~~l~  344 (876)
T 4ecn_A          271 YKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPDAIG  344 (876)
T ss_dssp             HHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECGGGG
T ss_pred             HHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCchHHh
Confidence            33999999999776     45433     245  999            99999874 4999999999999999999999


Q ss_pred             CCCCCCEEEc-cCCCCcCC-------------------------------------------------------------
Q 039201           92 NPSFVRVIVL-ANNSYYGE-------------------------------------------------------------  109 (258)
Q Consensus        92 ~l~~L~~L~L-s~n~l~g~-------------------------------------------------------------  109 (258)
                      ++++|++|+| ++|.+.|.                                                             
T Consensus       345 ~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~  424 (876)
T 4ecn_A          345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS  424 (876)
T ss_dssp             GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCC
T ss_pred             ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccc
Confidence            9999999999 77766554                                                             


Q ss_pred             ---------------CCcccCCCCCCcEEc-CCCccCC-----------------CCCcccC--CCCCCCEEEccccccc
Q 039201          110 ---------------IPNEVGCLSRLETLI-GGYRLGG-----------------KIPESLG--QLGSINYLILAENNFS  154 (258)
Q Consensus       110 ---------------~p~~l~~l~~L~~L~-~~n~l~g-----------------~ip~~~~--~l~~L~~L~L~~n~l~  154 (258)
                                     +|..++++++|++|+ ++|.++|                 .+|+.++  ++++|++|+|++|++.
T Consensus       425 l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~  504 (876)
T 4ecn_A          425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM  504 (876)
T ss_dssp             CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred             hhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence                           677777888888888 7777777                 3788777  8888888888888888


Q ss_pred             cccc-cccCCCCcceecceeecCCCc-ccc-ccCccccCCC-------CCCeEecCCCcCCccCCCCchhhh--hhcCCC
Q 039201          155 GTLR-SIFNISSLEFQSSETEKSKNR-FTG-KLGIDFNSLI-------NLARLNLGQKNLGIGTTSDLDFIT--LLRNCS  222 (258)
Q Consensus       155 g~~p-~~~~l~~L~~l~l~L~l~~n~-~~g-~ip~~~~~l~-------~L~~L~ls~N~l~g~~p~~~~~~~--~l~~l~  222 (258)
                      |.+| .++++++|++    |++++|+ ++| .+|..+++++       +|++|++++|.++ .+      |.  .+++++
T Consensus       505 ~~iP~~l~~L~~L~~----L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i------p~~~~l~~L~  573 (876)
T 4ecn_A          505 TQLPDFLYDLPELQS----LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF------PASASLQKMV  573 (876)
T ss_dssp             CSCCGGGGGCSSCCE----EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC------CCHHHHTTCT
T ss_pred             ccChHHHhCCCCCCE----EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc------CChhhhhcCC
Confidence            8888 7888888888    7788887 777 7777666555       7777777777777 43      33  455555


Q ss_pred             CCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201          223 KLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       223 ~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      +|+.|  ++|+++ .+| .++.+++|+.|+|++|++
T Consensus       574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l  607 (876)
T 4ecn_A          574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI  607 (876)
T ss_dssp             TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCC
T ss_pred             CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcc
Confidence            55555  555555 555 555555555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=2.1e-28  Score=234.64  Aligned_cols=178  Identities=31%  Similarity=0.431  Sum_probs=130.3

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++|.+.|.+|..+..+++|++|++++|.+.|.+|..++++++|++|+ ++|.++|.+|..++++++|++|+++
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN  546 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence            456666666666666666666666666666666666666666666666666666 6666666666666667777777777


Q ss_pred             ccccccccc-cccC------------------------------------------------------------------
Q 039201          150 ENNFSGTLR-SIFN------------------------------------------------------------------  162 (258)
Q Consensus       150 ~n~l~g~~p-~~~~------------------------------------------------------------------  162 (258)
                      +|+++|.+| .+++                                                                  
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            766666665 4322                                                                  


Q ss_pred             ----CCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccccccc
Q 039201          163 ----ISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTI  236 (258)
Q Consensus       163 ----l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~i  236 (258)
                          +++|++    +++++|+++|.+|..++++++|++|++++|.++|.      +|..++++++|+.|  ++|+++|.+
T Consensus       627 ~~~~l~~L~~----LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~------ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          627 TFDNNGSMMF----LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS------IPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             SCSSSBCCCE----EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC------CCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             hhhccccccE----EECcCCcccccCCHHHhccccCCEEeCcCCccCCC------CChHHhCCCCCCEEECCCCcccCcC
Confidence                234455    77888888888888888888888888888888887      45778888888888  899999999


Q ss_pred             chhhcCCCCCCeEeccCCcCCC
Q 039201          237 PDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       237 p~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      |..++.+++|++||+++|+++|
T Consensus       697 p~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          697 PQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CGGGGGCCCCSEEECCSSEEEE
T ss_pred             ChHHhCCCCCCEEECcCCcccc
Confidence            9999999999999999998876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=7.9e-28  Score=207.60  Aligned_cols=184  Identities=24%  Similarity=0.324  Sum_probs=143.7

Q ss_pred             CcEEEEEcCC-CCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201           70 PRVTKLDLRS-KSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        70 ~~v~~l~l~~-~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      ++++.|++++ |++.+.+|+.++++++|++|++++|.+++.+|..+.++++|++|+ ++|.+.+.+|..+.++++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            4788999985 888888898899999999999999999888898888999999998 88888888888888889999999


Q ss_pred             ccccccccccc-cccCCC-CcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch------------
Q 039201          148 LAENNFSGTLR-SIFNIS-SLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD------------  213 (258)
Q Consensus       148 L~~n~l~g~~p-~~~~l~-~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~------------  213 (258)
                      +++|+++|.+| .+++++ +|++    +++++|++++.+|..++.++ |++|++++|.+++.+|..+.            
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~----L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTS----MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCE----EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             CcCCcccCcCCHHHhhhhhcCcE----EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            99998888888 888887 8888    66666666655555555554 55555555555443332110            


Q ss_pred             -----hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          214 -----FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       214 -----~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                           .++.+..+++|++|  ++|+++|.+|..+..+++|++|++++|+++|
T Consensus       231 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence                 23346677777777  8899999999999999999999999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=3e-25  Score=187.34  Aligned_cols=177  Identities=23%  Similarity=0.196  Sum_probs=136.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .++.|++++|++.+..+..+..+++|++|++++|.++...+..+.++++|++|+ ++|.+.+..+..+.++++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            477788888888765556788888888888888888743334457788888888 6677776555567888888888888


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-  227 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-  227 (258)
                      +|++++..| .+.++++|++    |++++|++++..+..+..+++|++|++++|.+++.      .+..+.++++|++| 
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~  187 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTY----LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV------PEGAFDKLTELKTLK  187 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------CTTTTTTCTTCCEEE
T ss_pred             CCccCeeCHHHhCcCcCCCE----EECCCCcCCccCHhHccCCcccceeEecCCcCcEe------ChhHhccCCCcCEEE
Confidence            888886666 6788888888    88888888865555578888899999988888874      22356777888877 


Q ss_pred             -cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                       ++|++++..+..+..+++|+.|++++|+++
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence             888998655556888899999999999875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3e-26  Score=199.08  Aligned_cols=174  Identities=16%  Similarity=0.152  Sum_probs=113.9

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc--------------
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE--------------  135 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~--------------  135 (258)
                      +++.|++++|.+. .+|..++.+++|++|++++|.++ .+|..++++++|++|+ ++|++.+.+|.              
T Consensus       105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            4555666666555 55555555666666666666555 5555555555555555 44444444444              


Q ss_pred             ------------------ccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCe
Q 039201          136 ------------------SLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLAR  196 (258)
Q Consensus       136 ------------------~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~  196 (258)
                                        .++++++|++|++++|++++ +| .+..+++|++    |++++|++.+.+|..++.+++|++
T Consensus       183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~----L~Ls~n~~~~~~p~~~~~l~~L~~  257 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE----LDLRGCTALRNYPPIFGGRAPLKR  257 (328)
T ss_dssp             TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE----EECTTCTTCCBCCCCTTCCCCCCE
T ss_pred             CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE----EECcCCcchhhhHHHhcCCCCCCE
Confidence                              44445555555555555542 33 4445555555    666666666666666666777777


Q ss_pred             EecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          197 LNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       197 L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      |++++|.+.+.      +|..++++++|++|  ++|++.|.+|++++++++|+.+++..|.+.
T Consensus       258 L~L~~n~~~~~------~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          258 LILKDCSNLLT------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             EECTTCTTCCB------CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             EECCCCCchhh------cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            77777666665      45668888889888  899999999999999999999999988654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.93  E-value=1.9e-25  Score=186.58  Aligned_cols=187  Identities=19%  Similarity=0.153  Sum_probs=162.1

Q ss_pred             CCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCC
Q 039201           56 NLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP  134 (258)
Q Consensus        56 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip  134 (258)
                      +||.|.|.+|..   ..+.+++++++++ .+|..+.  +.+++|++++|.+.+..|..+.++++|++|+ ++|.+.+..|
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            578999999964   4567999999987 5776555  6899999999999988888899999999999 8889998778


Q ss_pred             cccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch
Q 039201          135 ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD  213 (258)
Q Consensus       135 ~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~  213 (258)
                      ..+.++++|++|++++|++++..+ .+..+++|++    |++++|++++..+..+..+++|++|++++|.+++.      
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------  146 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK----LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI------  146 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCE----EEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc------
Confidence            889999999999999999996666 7889999999    99999999966666678999999999999999974      


Q ss_pred             hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          214 FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       214 ~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      .+..++++++|++|  ++|++++..|..+..+++|++|++++|++++
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            22367888888888  9999997777789999999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=2.9e-24  Score=182.39  Aligned_cols=176  Identities=19%  Similarity=0.157  Sum_probs=97.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCc-cCCCCCcccCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYR-LGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~-l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +++.|+++++.+++..+..+..+++|++|++++|.+++..|..+.++++|++|+ ++|. +....|..+.++++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            566666666666655555566666666666666666655566666666666666 4443 44333555666666666666


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      ++|.+++..| .+.++++|++    +++++|++++..+..++.+++|++|++++|.+++..      +..+.++++|++|
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L  182 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQY----LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP------ERAFRGLHSLDRL  182 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC------TTTTTTCTTCCEE
T ss_pred             CCCcCCEECHhHhhCCcCCCE----EECCCCcccccCHhHhccCCCccEEECCCCcccccC------HHHhcCccccCEE
Confidence            6666665545 5556666666    555666655444444555556666666666555421      1123334444443


Q ss_pred             --cccccccccchhhcCCCCCCeEeccCCcC
Q 039201          228 --QYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       228 --~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                        ++|++++..|..+..+++|+.|++++|++
T Consensus       183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence              44444444444444444444444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=1.8e-24  Score=194.88  Aligned_cols=151  Identities=18%  Similarity=0.169  Sum_probs=125.3

Q ss_pred             CCccccc--eeeCCCC--------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc
Q 039201           56 NLCQWTG--VTCSHRH--------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI  124 (258)
Q Consensus        56 ~~c~w~g--v~c~~~~--------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~  124 (258)
                      ..|.|.+  +.|+...        ++++.|++++|.+.+..|..+.++++|++|++++|.+.+.+| ..+.++++|++|+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            4565555  7776432        479999999999998888899999999999999999987775 5688999999999


Q ss_pred             -CCCccCCCCCcccCCCCCCCEEEccccccccccc-c--ccCCCCcceecceeecCCCccccccCcc-ccCCCCCCeEec
Q 039201          125 -GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-S--IFNISSLEFQSSETEKSKNRFTGKLGID-FNSLINLARLNL  199 (258)
Q Consensus       125 -~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~--~~~l~~L~~l~l~L~l~~n~~~g~ip~~-~~~l~~L~~L~l  199 (258)
                       ++|.+++..|..++++++|++|++++|++++.+| .  +.++++|++    |++++|++++..|.. ++.+++|++|++
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~----L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM----LVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE----EECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE----EECCCCccCccCcccccCCCCcccEEeC
Confidence             8888888888899999999999999999988666 4  888999999    888888888777766 778888888888


Q ss_pred             CCCcCCccCCC
Q 039201          200 GQKNLGIGTTS  210 (258)
Q Consensus       200 s~N~l~g~~p~  210 (258)
                      ++|.+++..|.
T Consensus       162 ~~n~l~~~~~~  172 (455)
T 3v47_A          162 TFNKVKSICEE  172 (455)
T ss_dssp             TTCCBSCCCTT
T ss_pred             CCCcccccChh
Confidence            88888776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=3.5e-24  Score=183.64  Aligned_cols=198  Identities=19%  Similarity=0.208  Sum_probs=105.4

Q ss_pred             CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcC--C---------------
Q 039201           56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYG--E---------------  109 (258)
Q Consensus        56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g--~---------------  109 (258)
                      ..|.|.++.|+...         ++++.|++++|+++...+..+..+++|++|++++|.++.  .               
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            45889999997522         368888898888874333446788888888888877652  1               


Q ss_pred             --------CCcccCCCCCCcEEc-CCCccCCCCC-cccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCC
Q 039201          110 --------IPNEVGCLSRLETLI-GGYRLGGKIP-ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKN  178 (258)
Q Consensus       110 --------~p~~l~~l~~L~~L~-~~n~l~g~ip-~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n  178 (258)
                              +|..+.++++|++|+ ++|.+.+..+ ..+..+++|++|++++|.+++..| .+..+++|++    +++++|
T Consensus        85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~----L~l~~n  160 (306)
T 2z66_A           85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV----LKMAGN  160 (306)
T ss_dssp             CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE----EECTTC
T ss_pred             CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE----EECCCC
Confidence                    223334444444444 3444443222 244455555555555555554444 4445555555    455555


Q ss_pred             cccc-ccCccccCCCCCCeEecCCCcCCccCCCCch------------------hhhhhcCCCCCccc--cccccccccc
Q 039201          179 RFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLD------------------FITLLRNCSKLKTL--QYNQLTGTIP  237 (258)
Q Consensus       179 ~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~------------------~~~~l~~l~~L~~L--~~N~l~g~ip  237 (258)
                      .+.+ .+|..+..+++|++|++++|.+++..|..+.                  .+..+..+++|++|  ++|++++..|
T Consensus       161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            5443 3444445555555555555554443211100                  11234444445544  5555555555


Q ss_pred             hhhcCCC-CCCeEeccCCcCC
Q 039201          238 DTTGELR-NLQAPDLSENNLN  257 (258)
Q Consensus       238 ~~l~~l~-~L~~L~Ls~N~l~  257 (258)
                      ..+..++ +|++|++++|+++
T Consensus       241 ~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCCEE
T ss_pred             HHHHhhhccCCEEEccCCCee
Confidence            5555553 5555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=9.1e-24  Score=179.34  Aligned_cols=178  Identities=23%  Similarity=0.235  Sum_probs=159.2

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCC-CcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNS-YYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~-l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      ++++.|++++|.+.+..|..+..+++|++|++++|. +....|..+.++++|++|+ ++|.+.+..|..+.++++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            489999999999998888899999999999999998 7655578899999999999 88889887788899999999999


Q ss_pred             ccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcc
Q 039201          148 LAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT  226 (258)
Q Consensus       148 L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~  226 (258)
                      +++|++++..+ .+..+++|++    +++++|++++..+..+..+++|++|++++|.+++.      .|..++++++|+.
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~  205 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTH----LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV------HPHAFRDLGRLMT  205 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCE----EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CTTTTTTCTTCCE
T ss_pred             CCCCcccccCHhHhccCCCccE----EECCCCcccccCHHHhcCccccCEEECCCCccccc------CHhHccCcccccE
Confidence            99999996666 6889999999    99999999966666799999999999999999986      3567788888888


Q ss_pred             c--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          227 L--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       227 L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      |  ++|++++..+..+..+++|++|++++|+++
T Consensus       206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             eeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            8  999999766677999999999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=1.3e-23  Score=189.70  Aligned_cols=190  Identities=18%  Similarity=0.160  Sum_probs=132.1

Q ss_pred             ccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc
Q 039201           60 WTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL  129 (258)
Q Consensus        60 w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l  129 (258)
                      |..+.|....         ++++.|++++|++.+..+..+.++++|++|+|++|.+++..|..+.++++|++|+ ++|.+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            4567776422         3789999999999988888999999999999999999987778899999999999 77888


Q ss_pred             CCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce---------------------eecCCCccccccCcc
Q 039201          130 GGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE---------------------TEKSKNRFTGKLGID  187 (258)
Q Consensus       130 ~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~---------------------L~l~~n~~~g~ip~~  187 (258)
                      ++..+..+.++++|++|++++|++++..+ .+.++++|++|+++                     |++++|++++ +| .
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~  213 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-N  213 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-C
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-c
Confidence            86555668889999999999998885444 56666666662221                     4444444432 22 2


Q ss_pred             ccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          188 FNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       188 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +..+++|++|++++|.+++.      .|..+.++++|+.|  ++|++++..|..+..+++|+.|+|++|+++
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEI------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEE------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccccccEEECcCCcCccc------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            44444555555555555443      24455666666665  666666666666666666666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3e-23  Score=175.33  Aligned_cols=184  Identities=23%  Similarity=0.189  Sum_probs=144.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .++.|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|+ ++|.+.+..|..+.++++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            588999999999877666888999999999999998866666788899999998 7788887777888899999999999


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhh-----------
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFIT-----------  216 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~-----------  216 (258)
                      +|++++..+ .+.++++|++    +++++|++.+ .+|..++.+++|++|++++|.+++..+..+....           
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKE----LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCE----EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             CCCccccCchhcccCCCCCE----EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            999887666 7888899999    8889999876 4688888999999999999988875332221111           


Q ss_pred             ----------hhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          217 ----------LLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       217 ----------~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                                ......+|++|  ++|++++..+..+..+++|+.|++++|++++
T Consensus       185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence                      11112245555  7788885555556888999999999998874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=4.4e-23  Score=178.65  Aligned_cols=195  Identities=23%  Similarity=0.305  Sum_probs=140.2

Q ss_pred             CCccccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201           56 NLCQWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G  125 (258)
Q Consensus        56 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~  125 (258)
                      ..|.|+.+.|...         .+.++.|++++|++++..+..+.++++|++|++++|.+++..|..++++++|++|+ +
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            4578999998742         24789999999999987777899999999999999999987788899999999998 5


Q ss_pred             CCccCCCCCc----------------------ccCCCCCCCEEEcccccccc--ccc-cccCCCCcceecce--------
Q 039201          126 GYRLGGKIPE----------------------SLGQLGSINYLILAENNFSG--TLR-SIFNISSLEFQSSE--------  172 (258)
Q Consensus       126 ~n~l~g~ip~----------------------~~~~l~~L~~L~L~~n~l~g--~~p-~~~~l~~L~~l~l~--------  172 (258)
                      +|.++ .+|.                      .+.++++|++|++++|.++.  ..+ .+.++++|++|+++        
T Consensus       109 ~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          109 KNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             SSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            55554 3443                      34556666666666666642  334 45555555553332        


Q ss_pred             ---------eecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhc
Q 039201          173 ---------TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTG  241 (258)
Q Consensus       173 ---------L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~  241 (258)
                               +++++|++++..|..+..+++|++|++++|.+++..      +..+..+++|++|  ++|+++ .+|..+.
T Consensus       188 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  260 (330)
T 1xku_A          188 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANTPHLRELHLNNNKLV-KVPGGLA  260 (330)
T ss_dssp             SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC------TTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC------hhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence                     566666666666666777777777777777776642      2356667777776  778887 7888888


Q ss_pred             CCCCCCeEeccCCcCCC
Q 039201          242 ELRNLQAPDLSENNLNA  258 (258)
Q Consensus       242 ~l~~L~~L~Ls~N~l~G  258 (258)
                      .+++|++|++++|++++
T Consensus       261 ~l~~L~~L~l~~N~i~~  277 (330)
T 1xku_A          261 DHKYIQVVYLHNNNISA  277 (330)
T ss_dssp             TCSSCCEEECCSSCCCC
T ss_pred             cCCCcCEEECCCCcCCc
Confidence            88888888888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=2.9e-23  Score=168.42  Aligned_cols=173  Identities=17%  Similarity=0.185  Sum_probs=146.8

Q ss_pred             CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201           56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G  125 (258)
Q Consensus        56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~  125 (258)
                      ..|.|.++.|....         ++++.|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|+ +
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            45899999997532         3699999999999976666789999999999999999965555678999999999 7


Q ss_pred             CCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201          126 GYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL  204 (258)
Q Consensus       126 ~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l  204 (258)
                      +|.+++..+..+.++++|++|++++|++++..+ .+.++++|++    +++++|++++..+..+..+++|++|++++|.+
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD----LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE----EECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            788886656668999999999999999996666 6889999999    99999999976666689999999999999998


Q ss_pred             CccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201          205 GIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN  245 (258)
Q Consensus       205 ~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~  245 (258)
                      .+..             +.|++|  +.|+++|.+|.+++.++.
T Consensus       161 ~~~~-------------~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          161 DCTC-------------PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCCT-------------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ecCC-------------CCHHHHHHHHHhCCceeeccCccccC
Confidence            8742             345555  889999999999988764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=4.4e-23  Score=178.88  Aligned_cols=194  Identities=22%  Similarity=0.269  Sum_probs=132.3

Q ss_pred             CCccccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201           56 NLCQWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G  125 (258)
Q Consensus        56 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~  125 (258)
                      ..|.|+.+.|...         .++++.|++++|.+.+..|..+.++++|++|++++|.+++..|..++++++|++|+ +
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4478999998742         23789999999999877777899999999999999999877788889999999998 5


Q ss_pred             CCccCCCCCcc----------------------cCCCCCCCEEEcccccccc--ccc-cccCCCCcceecce--------
Q 039201          126 GYRLGGKIPES----------------------LGQLGSINYLILAENNFSG--TLR-SIFNISSLEFQSSE--------  172 (258)
Q Consensus       126 ~n~l~g~ip~~----------------------~~~l~~L~~L~L~~n~l~g--~~p-~~~~l~~L~~l~l~--------  172 (258)
                      +|.+. .+|..                      +.++++|++|++++|.++.  ..| .+..+ +|++|+++        
T Consensus       111 ~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          111 KNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             CCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            55554 44433                      4455555555555555531  223 33322 22221111        


Q ss_pred             ---------eecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhc
Q 039201          173 ---------TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTG  241 (258)
Q Consensus       173 ---------L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~  241 (258)
                               +++++|++++..|..+..+++|++|++++|.+++.      .+..++.+++|++|  ++|+++ .+|..+.
T Consensus       189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~  261 (332)
T 2ft3_A          189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI------ENGSLSFLPTLRELHLDNNKLS-RVPAGLP  261 (332)
T ss_dssp             SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC------CTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred             ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC------ChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence                     55555555555555666666677777777766663      23356677777776  778887 7888888


Q ss_pred             CCCCCCeEeccCCcCCC
Q 039201          242 ELRNLQAPDLSENNLNA  258 (258)
Q Consensus       242 ~l~~L~~L~Ls~N~l~G  258 (258)
                      .+++|++|++++|++++
T Consensus       262 ~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             GCTTCCEEECCSSCCCB
T ss_pred             cCccCCEEECCCCCCCc
Confidence            88888888888887763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=5.1e-23  Score=185.18  Aligned_cols=190  Identities=18%  Similarity=0.173  Sum_probs=116.8

Q ss_pred             ccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCcc
Q 039201           60 WTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRL  129 (258)
Q Consensus        60 w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l  129 (258)
                      |..+.|...         .+.++.|++++|++.+..+..+.++++|++|+|++|.+.+..+..+.++++|++|+ ++|.+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            456777531         13577888888888877777788888888888888888765556777888888888 66667


Q ss_pred             CCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce---------------------eecCCCccccccCcc
Q 039201          130 GGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE---------------------TEKSKNRFTGKLGID  187 (258)
Q Consensus       130 ~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~---------------------L~l~~n~~~g~ip~~  187 (258)
                      ++..+..+.++++|++|++++|++++..+ .+.++++|++|++.                     |++++|+++ .+|. 
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-  202 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-  202 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-
Confidence            65444567777777777777777764444 55555666652221                     444444444 3332 


Q ss_pred             ccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          188 FNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       188 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +..+++|++|++++|.+++..      +..+.++++|+.|  ++|++++..|..+..+++|+.|+|++|+++
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIR------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEEC------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCCCcccCEEECCCCccCccC------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            444455555555555555432      3344455555555  555555555555555556666666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=1.1e-24  Score=204.92  Aligned_cols=161  Identities=20%  Similarity=0.233  Sum_probs=131.3

Q ss_pred             CcccCCccCCCCCCCCEEEccCCCCcCC-----------------CCcccC--CCCCCcEEc-CCCccCCCCCcccCCCC
Q 039201           82 IGGFLSPFVGNPSFVRVIVLANNSYYGE-----------------IPNEVG--CLSRLETLI-GGYRLGGKIPESLGQLG  141 (258)
Q Consensus        82 l~g~lp~~~~~l~~L~~L~Ls~n~l~g~-----------------~p~~l~--~l~~L~~L~-~~n~l~g~ip~~~~~l~  141 (258)
                      ++| +|+.++++++|++|++++|.++|.                 +|+.++  ++++|++|+ ++|.+.|.+|+.+++++
T Consensus       195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  273 (636)
T 4eco_A          195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP  273 (636)
T ss_dssp             EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred             Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence            345 888999999999999999999986                 999999  999999999 88999999999999999


Q ss_pred             CCCEEEccccc-ccc-ccc-cccCC------CCcceecceeecCCCccccccCc--cccCCCCCCeEecCCCcCCccCCC
Q 039201          142 SINYLILAENN-FSG-TLR-SIFNI------SSLEFQSSETEKSKNRFTGKLGI--DFNSLINLARLNLGQKNLGIGTTS  210 (258)
Q Consensus       142 ~L~~L~L~~n~-l~g-~~p-~~~~l------~~L~~l~l~L~l~~n~~~g~ip~--~~~~l~~L~~L~ls~N~l~g~~p~  210 (258)
                      +|++|++++|+ ++| .+| .++++      ++|++    +++++|+++ .+|.  .++++++|++|++++|.++|.+| 
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~----L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI----IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE----EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCE----EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            99999999998 999 899 88876      99999    999999999 8998  89999999999999999998866 


Q ss_pred             CchhhhhhcCCCCCccc--cccccccccchhhcCCCC-CCeEeccCCcC
Q 039201          211 DLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN-LQAPDLSENNL  256 (258)
Q Consensus       211 ~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l  256 (258)
                            .++++++|++|  ++|+++ .+|..++.+++ |++|++++|++
T Consensus       348 ------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          348 ------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             ------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred             ------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence                  23333444443  444444 44444444444 55555544444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=6.4e-24  Score=195.51  Aligned_cols=190  Identities=20%  Similarity=0.253  Sum_probs=153.8

Q ss_pred             CccccceeeCCC-----------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-
Q 039201           57 LCQWTGVTCSHR-----------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-  124 (258)
Q Consensus        57 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-  124 (258)
                      .|.|.|+ |+.+           .++++.|++++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|+ 
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            5888888 7642           23799999999999988888999999999999999999988888899999999999 


Q ss_pred             CCCccCCCCCcccCCCCCCCEEEcccccccc-ccc-cccCCCCcceecceeecCCCccccccC-ccccCCCCCCeEecCC
Q 039201          125 GGYRLGGKIPESLGQLGSINYLILAENNFSG-TLR-SIFNISSLEFQSSETEKSKNRFTGKLG-IDFNSLINLARLNLGQ  201 (258)
Q Consensus       125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g-~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip-~~~~~l~~L~~L~ls~  201 (258)
                      ++|.+.+..|..++++++|++|++++|++++ .+| .++++++|++    +++++|++.+.+| ..++.+++|++|++++
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~----L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT----LRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE----EEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE----EECCCCccccccCHhhhhcccccCeeeccC
Confidence            8888988777779999999999999999986 456 8999999999    9999999666776 5789999999999999


Q ss_pred             CcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhh-cCCCCCCeEeccCCcCCC
Q 039201          202 KNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTT-GELRNLQAPDLSENNLNA  258 (258)
Q Consensus       202 N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~G  258 (258)
                      |.+++.+|      ..++++++|++|  +.|.+. .+|..+ ..+++|++|++++|+++|
T Consensus       158 n~l~~~~~------~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          158 LSLRNYQS------QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTCCEECT------TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             CcccccCh------hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence            99998744      455556555555  555554 344433 446666666666666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.2e-22  Score=171.60  Aligned_cols=174  Identities=21%  Similarity=0.232  Sum_probs=139.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.++++++.+.. + +.+..+++|++|++++|.+++ + +.+.++++|++|+ ++|.+++..|..+.++++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            68888888888763 3 347888899999999998875 3 4678888999998 7778887666667888999999999


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-  227 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-  227 (258)
                      +|++++..| .+.++++|++    |++++|++++..|..++.+++|++|++++|.+++.      .+..++++++|++| 
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~----L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTY----LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL------PEGVFDKLTQLKDLR  187 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC------CTTTTTTCTTCCEEE
T ss_pred             CCcCCccCHHHhccCCCCCE----EECCCCccCccCHHHhccCccCCEEECCCCCcCcc------CHHHhcCCccCCEEE
Confidence            999886666 6788889999    88889988876666678888999999999988864      23446777788877 


Q ss_pred             -cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                       ++|++++..|..+..+++|++|++++|+++|
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence             8888887777778888999999999988765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=3.4e-23  Score=177.41  Aligned_cols=156  Identities=17%  Similarity=0.204  Sum_probs=110.0

Q ss_pred             cEEEEEcCCCCCcccCC-ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC-CCCcccCCCCCCCEEE
Q 039201           71 RVTKLDLRSKSIGGFLS-PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG-KIPESLGQLGSINYLI  147 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp-~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g-~ip~~~~~l~~L~~L~  147 (258)
                      +++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|+ ++|.+.+ .+|..+..+++|++|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            45555555555544333 3566667777777777777666666667777777777 6666665 4667777777888888


Q ss_pred             ccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC-CCCc
Q 039201          148 LAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC-SKLK  225 (258)
Q Consensus       148 L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l-~~L~  225 (258)
                      +++|++++..| .+..+++|++    +++++|++++..+..+..+++|++|++++|.+++..      +..+..+ ++|+
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~~L~  251 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQV----LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK------KQELQHFPSSLA  251 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCE----EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS------SSSCCCCCTTCC
T ss_pred             CCCCCcCCcCHHHhcCCCCCCE----EECCCCccCccChhhccCcccCCEeECCCCCCcccC------HHHHHhhhccCC
Confidence            88887776666 6777778887    888888887666667778888888888888888764      3456666 3677


Q ss_pred             cc--ccccccccc
Q 039201          226 TL--QYNQLTGTI  236 (258)
Q Consensus       226 ~L--~~N~l~g~i  236 (258)
                      +|  ++|.+++..
T Consensus       252 ~L~L~~N~~~~~c  264 (306)
T 2z66_A          252 FLNLTQNDFACTC  264 (306)
T ss_dssp             EEECTTCCEECSG
T ss_pred             EEEccCCCeeccc
Confidence            77  999998753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.3e-22  Score=189.42  Aligned_cols=180  Identities=18%  Similarity=0.139  Sum_probs=87.5

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|++++|.+.+..|..++.+++|++|+|++|.+++..|..++++++|++|+ ++|.+++..+..++++++|++|+++
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            344555555555544444555555555555555555544444445555555555 4444443222223555555555555


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc-CCC-----------------
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG-TTS-----------------  210 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~-~p~-----------------  210 (258)
                      +|.+++..| .+.++++|++    |++++|.+++.-   ++.+++|+.|++++|.+++. .|.                 
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~  228 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQN----LQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG  228 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCE----EECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEEC
T ss_pred             CCcCCCCChhhhhcCCcCcE----EECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccc
Confidence            555555444 4555555555    444444443221   11111111111111111110 000                 


Q ss_pred             ----C----------chhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          211 ----D----------LDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       211 ----~----------~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                          .          +.-++.++++++|+.|  ++|.+++.+|..++.+++|+.|+|++|+++
T Consensus       229 ~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  291 (597)
T 3oja_B          229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV  291 (597)
T ss_dssp             SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred             ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence                0          0012345566666666  677777777777777777777777777665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=183.99  Aligned_cols=196  Identities=18%  Similarity=0.205  Sum_probs=155.9

Q ss_pred             CCCCCCCccccceeeCCC-----------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCC
Q 039201           51 WKASLNLCQWTGVTCSHR-----------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR  119 (258)
Q Consensus        51 w~~~~~~c~w~gv~c~~~-----------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~  119 (258)
                      |......|.|.++ |+..           .++++.|++++|++++..+..+..+++|++|++++|.+++..|..++++++
T Consensus        23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            4444577888877 6532           237999999999998766668999999999999999999877788999999


Q ss_pred             CcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCc-cccccCccccCCCCCC
Q 039201          120 LETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNR-FTGKLGIDFNSLINLA  195 (258)
Q Consensus       120 L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~-~~g~ip~~~~~l~~L~  195 (258)
                      |++|+ ++|.+++..+..++++++|++|++++|++++..+  .+.++++|++    +++++|+ +.+..|..++.+++|+
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~----L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI----LRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE----EEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE----EECCCCccccccCHHHccCCCCCC
Confidence            99999 7788875433448999999999999999984333  4778999999    9999984 6655577889999999


Q ss_pred             eEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh-hcCCCCCCeEeccCCcCCC
Q 039201          196 RLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT-TGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       196 ~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~G  258 (258)
                      +|++++|.+++.      .|..++++++|++|  ++|+++ .+|.. +..+++|++|++++|++++
T Consensus       178 ~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          178 ELEIDASDLQSY------EPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EEEEEETTCCEE------CTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             EEECCCCCcCcc------CHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccc
Confidence            999999999886      35667778888887  888886 55554 4558899999999998864

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=9.2e-24  Score=181.90  Aligned_cols=179  Identities=19%  Similarity=0.200  Sum_probs=107.7

Q ss_pred             cEEEEEcCCCCCcccCCccC--CCCCCCCEEEccCCCCcCCCCcccCCC-----CCCcEEc-CCCccCCCCCcccCCCCC
Q 039201           71 RVTKLDLRSKSIGGFLSPFV--GNPSFVRVIVLANNSYYGEIPNEVGCL-----SRLETLI-GGYRLGGKIPESLGQLGS  142 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~--~~l~~L~~L~Ls~n~l~g~~p~~l~~l-----~~L~~L~-~~n~l~g~ip~~~~~l~~  142 (258)
                      +++.|++++|.+++.+|..+  ..+++|++|++++|.+++. |..++++     ++|++|+ ++|.+.+..|..++++++
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            67777777777777777765  7777788888887777765 6666655     7777777 667777666677777777


Q ss_pred             CCEEEccccccccc--cc-cc--cCCCCcceecceeecCCCcccc--ccCc-cccCCCCCCeEecCCCcCCccCCCC-ch
Q 039201          143 INYLILAENNFSGT--LR-SI--FNISSLEFQSSETEKSKNRFTG--KLGI-DFNSLINLARLNLGQKNLGIGTTSD-LD  213 (258)
Q Consensus       143 L~~L~L~~n~l~g~--~p-~~--~~l~~L~~l~l~L~l~~n~~~g--~ip~-~~~~l~~L~~L~ls~N~l~g~~p~~-~~  213 (258)
                      |++|++++|++.|.  +| .+  .++++|++    |++++|++++  .++. .+..+++|++|++++|.+++.+|.. +.
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQV----LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCE----EECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCE----EECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            77777777777654  23 33  66777777    5556665552  2222 2234555555666555555543210 00


Q ss_pred             -----------------hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          214 -----------------FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       214 -----------------~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                                       +|..+.  ++|++|  ++|++++. |. +..+++|++|++++|+++|
T Consensus       251 ~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence                             112221  333333  55666533 44 5566666666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=2.5e-22  Score=182.13  Aligned_cols=187  Identities=20%  Similarity=0.124  Sum_probs=152.9

Q ss_pred             cccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCc
Q 039201           59 QWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYR  128 (258)
Q Consensus        59 ~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~  128 (258)
                      .|..+.|...         ..+++.|++++|++++..+..+..+++|++|+|++|.+++..|..+.++++|++|+ ++|.
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            3567888642         23689999999999988888999999999999999999988888999999999999 7777


Q ss_pred             cCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          129 LGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       129 l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      +.+..+..+.++++|++|++++|++++..| .+.++++|++    |++++|++.+..|..+..+++|++|++++|.+++.
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS----LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE----EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE----EECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            775444567899999999999999998888 8899999999    99999999988888899999999999999998874


Q ss_pred             CCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201          208 TTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       208 ~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                            .+..+.++++|+.|  ++|++++..+..+..+++|+.|++++|+
T Consensus       168 ------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          168 ------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             ------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             ------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence                  23456677777766  6777776555566666666666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.89  E-value=2e-22  Score=181.44  Aligned_cols=115  Identities=20%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             CcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc
Q 039201          134 PESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL  212 (258)
Q Consensus       134 p~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~  212 (258)
                      |..++.+++|++|++++|++++..| .+.++++|++    |++++|++++..|..++.+++|++|++++|.+++.     
T Consensus       292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----  362 (455)
T 3v47_A          292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK----LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL-----  362 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE----EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE-----
T ss_pred             hhhcccCCCCCEEECCCCcccccChhHhcCcccCCE----EECCCCccCCcChhHhcCcccCCEEECCCCccccc-----
Confidence            3444455555555555555554444 5555555555    56666666555555556666666666666666553     


Q ss_pred             hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          213 DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       213 ~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                       .|..++++++|++|  ++|++++..+..+..+++|++|++++|+++|
T Consensus       363 -~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          363 -GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence             23455666666666  6666665444445666777777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=1.7e-22  Score=167.37  Aligned_cols=177  Identities=19%  Similarity=0.171  Sum_probs=146.9

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCC-CcCCCCcccCCCCCCcEEc-CC-CccCCCCCcccCCCCCCCEE
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNS-YYGEIPNEVGCLSRLETLI-GG-YRLGGKIPESLGQLGSINYL  146 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~-l~g~~p~~l~~l~~L~~L~-~~-n~l~g~ip~~~~~l~~L~~L  146 (258)
                      ..++.|++++|++++..+..+..+++|++|++++|. +++..+..+.++++|++|+ ++ |.+++..+..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            379999999999998777789999999999999997 7754445789999999999 55 88886666788999999999


Q ss_pred             EccccccccccccccCCCCcc---eecceeecCCC-ccccccCccccCCCCCC-eEecCCCcCCccCCCCchhhhhhcCC
Q 039201          147 ILAENNFSGTLRSIFNISSLE---FQSSETEKSKN-RFTGKLGIDFNSLINLA-RLNLGQKNLGIGTTSDLDFITLLRNC  221 (258)
Q Consensus       147 ~L~~n~l~g~~p~~~~l~~L~---~l~l~L~l~~n-~~~g~ip~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~~~~l~~l  221 (258)
                      ++++|++++ +|.+..+++|+   +    +++++| ++++..+..+..+++|+ +|++++|.++ .+|      ......
T Consensus       111 ~l~~n~l~~-lp~~~~l~~L~~L~~----L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~------~~~~~~  178 (239)
T 2xwt_C          111 GIFNTGLKM-FPDLTKVYSTDIFFI----LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQ------GYAFNG  178 (239)
T ss_dssp             EEEEECCCS-CCCCTTCCBCCSEEE----EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EEC------TTTTTT
T ss_pred             eCCCCCCcc-ccccccccccccccE----EECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccC------HhhcCC
Confidence            999999986 77777888887   8    999999 88866666789999999 9999999998 443      322222


Q ss_pred             CCCccc--cccc-cccccchhhcCC-CCCCeEeccCCcCCC
Q 039201          222 SKLKTL--QYNQ-LTGTIPDTTGEL-RNLQAPDLSENNLNA  258 (258)
Q Consensus       222 ~~L~~L--~~N~-l~g~ip~~l~~l-~~L~~L~Ls~N~l~G  258 (258)
                      ++|+.|  ++|+ +++..+..+..+ ++|+.|++++|++++
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            567766  8895 985556778889 999999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=4.9e-22  Score=169.61  Aligned_cols=174  Identities=21%  Similarity=0.111  Sum_probs=153.0

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +.++.|++++|.+++..+..+..+++|++|++++|.+++ +|.. +.+++|++|+ ++|.+. .+|..+..+++|++|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            378999999999998888899999999999999999985 4443 7899999999 777776 78999999999999999


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      ++|++++..| .+..+++|++    |++++|++++..+..+..+++|+.|++++|.+++. |     +..+.++++|++|
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~-----~~~~~~l~~L~~L  177 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQE----LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-P-----AGLLNGLENLDTL  177 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCE----EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-C-----TTTTTTCTTCCEE
T ss_pred             CCCcCcccCHHHHcCCCCCCE----EECCCCCCCccChhhcccccCCCEEECCCCcCCcc-C-----HHHhcCcCCCCEE
Confidence            9999997666 7999999999    99999999976666788999999999999999863 2     2345778888888


Q ss_pred             --cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 --QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 --~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                        ++|+++ .+|..+...++|+.++|++|++.
T Consensus       178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence              999999 89999999999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=1.1e-21  Score=173.70  Aligned_cols=106  Identities=18%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcc-cCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPES-LGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~-~~~l~~L~~L~L  148 (258)
                      +++.|+++++.+.+..+..+..+++|++|++++|.+++..|..++++++|++|+ ++|.+. .+|.. +.++++|++|++
T Consensus        70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence            344555555555544444555555555555555555544444455555555555 444444 33333 355555555555


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFT  181 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~  181 (258)
                      ++|++++..| .+.++++|++    |++++|+++
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~  178 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQN----LQLSSNRLT  178 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCE----EECCSSCCS
T ss_pred             CCCccCccChhhccCCCCCCE----EECCCCcCC
Confidence            5555554444 4555555555    444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.88  E-value=1.5e-22  Score=188.57  Aligned_cols=177  Identities=20%  Similarity=0.146  Sum_probs=152.5

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ++++.|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            4799999999999988888999999999999999999987788899999999999 888999888999999999999999


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc-
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK-  225 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~-  225 (258)
                      ++|.+++..| .++++++|++    |++++|++.+ .+|..++++++|++|++++|.+++..|.      .++.+++|+ 
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~----L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~  181 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKK----LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN------DLQFLRENPQ  181 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCE----EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT------TTHHHHHCTT
T ss_pred             cCCccccccccccCCCCCCCE----EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh------hhhhhhcccc
Confidence            9999997777 8999999999    9999999986 7899999999999999999999986443      344444332 


Q ss_pred             ---cc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          226 ---TL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       226 ---~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                         .+  ++|++++ +|+......+|+.|++++|+++
T Consensus       182 ~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~n~~~  217 (606)
T 3vq2_A          182 VNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNS  217 (606)
T ss_dssp             CCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSC
T ss_pred             ccceeeccCCCcce-eCcccccCceeeeeeccCCccc
Confidence               34  8899985 4444444458999999999775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=2.3e-23  Score=201.20  Aligned_cols=158  Identities=18%  Similarity=0.259  Sum_probs=136.8

Q ss_pred             CCccCCCCCCCCEEEccCCCCcC-----------------CCCcccC--CCCCCcEEc-CCCccCCCCCcccCCCCCCCE
Q 039201           86 LSPFVGNPSFVRVIVLANNSYYG-----------------EIPNEVG--CLSRLETLI-GGYRLGGKIPESLGQLGSINY  145 (258)
Q Consensus        86 lp~~~~~l~~L~~L~Ls~n~l~g-----------------~~p~~l~--~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~  145 (258)
                      +|+.++++++|++|+|++|.++|                 .+|+.++  ++++|++|+ ++|.+.|.+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            78889999999999999999998                 3999988  999999999 888999999999999999999


Q ss_pred             EEccccc-ccc-ccc-cccCCC-------CcceecceeecCCCccccccCc--cccCCCCCCeEecCCCcCCccCCCCch
Q 039201          146 LILAENN-FSG-TLR-SIFNIS-------SLEFQSSETEKSKNRFTGKLGI--DFNSLINLARLNLGQKNLGIGTTSDLD  213 (258)
Q Consensus       146 L~L~~n~-l~g-~~p-~~~~l~-------~L~~l~l~L~l~~n~~~g~ip~--~~~~l~~L~~L~ls~N~l~g~~p~~~~  213 (258)
                      |++++|+ ++| .+| .+++++       +|++    |++++|+++ .+|.  .++++++|++|++++|.++ .+|    
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~----L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp----  589 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQI----FYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE----  589 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE----EECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC----
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccE----EEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch----
Confidence            9999998 998 888 777665       9999    999999999 8998  8999999999999999998 543    


Q ss_pred             hhhhhcCCCCCccc--cccccccccchhhcCCCC-CCeEeccCCcCC
Q 039201          214 FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN-LQAPDLSENNLN  257 (258)
Q Consensus       214 ~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~  257 (258)
                         .++++++|+.|  ++|+++ .+|..+..+++ |+.|+|++|+++
T Consensus       590 ---~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          590 ---AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             ---CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             ---hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence               56666666666  777777 77777777777 777777777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=2.8e-22  Score=193.95  Aligned_cols=189  Identities=19%  Similarity=0.133  Sum_probs=164.3

Q ss_pred             ccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCC-CcccCCCCCCcEEc-CCCccCCCCCc
Q 039201           58 CQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEI-PNEVGCLSRLETLI-GGYRLGGKIPE  135 (258)
Q Consensus        58 c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~-p~~l~~l~~L~~L~-~~n~l~g~ip~  135 (258)
                      |.|..|.+  ..++++.|++++|.+++..|..+.++++|++|++++|.+.+.+ |..+.++++|++|+ ++|.+.+..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            46777776  3458999999999999988999999999999999999887787 67899999999999 88999998899


Q ss_pred             ccCCCCCCCEEEccccccccccc-c--ccCCCCcceecceeecCCCccccccC-ccccCCCCCCeEecCCCcCCccCCCC
Q 039201          136 SLGQLGSINYLILAENNFSGTLR-S--IFNISSLEFQSSETEKSKNRFTGKLG-IDFNSLINLARLNLGQKNLGIGTTSD  211 (258)
Q Consensus       136 ~~~~l~~L~~L~L~~n~l~g~~p-~--~~~l~~L~~l~l~L~l~~n~~~g~ip-~~~~~l~~L~~L~ls~N~l~g~~p~~  211 (258)
                      .++++++|++|+|++|.+++.+| .  +.++++|++    |++++|.+++..| ..++++++|++|++++|.+++..|  
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~----L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~--  165 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR----LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE--  165 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE----EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS--
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCE----EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH--
Confidence            99999999999999999998777 4  889999999    9999999987655 579999999999999999998744  


Q ss_pred             chhhhhhcCC--CCCccc--cccccccccchhhcCCCC------CCeEeccCCcCCC
Q 039201          212 LDFITLLRNC--SKLKTL--QYNQLTGTIPDTTGELRN------LQAPDLSENNLNA  258 (258)
Q Consensus       212 ~~~~~~l~~l--~~L~~L--~~N~l~g~ip~~l~~l~~------L~~L~Ls~N~l~G  258 (258)
                          ..++.+  ++|+.|  +.|.+++.+|..++.+++      |+.|++++|++++
T Consensus       166 ----~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          166 ----HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV  218 (844)
T ss_dssp             ----GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred             ----HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence                444444  566666  899999999988877766      9999999997764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.87  E-value=4.2e-22  Score=185.54  Aligned_cols=174  Identities=20%  Similarity=0.143  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      ++.+++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+.++++|++|+ ++|.+.+.+|..+.++++|++|+++
T Consensus       378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            4444444444432 33455555666666666666555544 4455666666666 5556666566666666666666666


Q ss_pred             ccccccc-cc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          150 ENNFSGT-LR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       150 ~n~l~g~-~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      +|++++. +| .+..+++|++    |++++|++++..|..++.+++|++|++++|.+++.      .|..++++++|+.|
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L  526 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTF----LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL------DSSHYNQLYSLSTL  526 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCE----EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE------EGGGTTTCTTCCEE
T ss_pred             CCcCCCcchHHhhccCCCCCE----EECCCCcCCccChhhhcccccCCEEECCCCcCCCc------CHHHccCCCcCCEE
Confidence            6666653 45 5666666666    66666666666666666666666666666666654      34556666666666


Q ss_pred             --cccccccccchhhcCCC-CCCeEeccCCcCC
Q 039201          228 --QYNQLTGTIPDTTGELR-NLQAPDLSENNLN  257 (258)
Q Consensus       228 --~~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~  257 (258)
                        ++|+++ .+|..+..++ +|++|++++|+++
T Consensus       527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred             ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence              666666 5666666665 4677777766664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=8.3e-22  Score=177.88  Aligned_cols=177  Identities=20%  Similarity=0.148  Sum_probs=137.9

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc-------------
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE-------------  135 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~-------------  135 (258)
                      ++++.|++++|.+.+..+..+..+++|++|+|++|.+++..+..+.++++|++|+ ++|.+.+..+.             
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            4688888888888877777788888888888888888754445577777888877 55555432222             


Q ss_pred             ------------ccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCc
Q 039201          136 ------------SLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN  203 (258)
Q Consensus       136 ------------~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~  203 (258)
                                  .+.++++|++|++++|+++ .+|.+..+++|++    |++++|++++..|..+..+++|+.|++++|.
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEE----LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCE----EECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCccc-ccccccccccccE----EECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence                        3455666666666666666 3456666777777    9999999999889999999999999999999


Q ss_pred             CCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          204 LGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       204 l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +++.      .+..+.++++|+.|  ++|++++..+..+..+++|+.|+|++|.+.
T Consensus       254 l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          254 VSLI------ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCEE------CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CceE------CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            9986      34567888888888  999999766677889999999999999864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.5e-21  Score=163.23  Aligned_cols=190  Identities=20%  Similarity=0.221  Sum_probs=161.2

Q ss_pred             CCCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCC
Q 039201           55 LNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKI  133 (258)
Q Consensus        55 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~i  133 (258)
                      .++|.|.|+.|.... .++.+++++++++ .+|..+.  +.+++|++++|.+++..+..+.++++|++|+ ++|.++...
T Consensus         2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            479999999997643 6788999999998 4776554  6899999999999966666899999999999 777887544


Q ss_pred             CcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc
Q 039201          134 PESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL  212 (258)
Q Consensus       134 p~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~  212 (258)
                      +..+.++++|++|++++|++++..+ .+..+++|++    |++++|++++..|..++.+++|++|++++|.+++.     
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----  148 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE----LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-----  148 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE----EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-----
Confidence            4456899999999999999996555 6789999999    99999999988788889999999999999999874     


Q ss_pred             hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          213 DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       213 ~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                       .+..++.+++|++|  ++|++++..+..+..+++|++|++++|++++
T Consensus       149 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          149 -PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             -CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence             22347788888888  8999997666678999999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=3.9e-22  Score=168.46  Aligned_cols=152  Identities=18%  Similarity=0.198  Sum_probs=111.1

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ++++.|++++|.+.+ + +.+..+++|++|++++|.+++..|..++++++|++|+ ++|.+++..|..++++++|++|++
T Consensus        63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            378888888888775 2 4677888888888888888765566677888888888 777777666666778888888888


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      ++|++++..| .+..+++|++    |++++|++++..+..++.+++|++|++++|.+++..      +..++++++|++|
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L  210 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTE----LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP------DGVFDRLTSLQYI  210 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEE
T ss_pred             CCCccCccCHHHhccCccCCE----EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC------HHHHhCCcCCCEE
Confidence            8888875555 5677888888    888888888666666778888888888888887742      2335555555555


Q ss_pred             --cccccc
Q 039201          228 --QYNQLT  233 (258)
Q Consensus       228 --~~N~l~  233 (258)
                        ++|.+.
T Consensus       211 ~l~~N~~~  218 (272)
T 3rfs_A          211 WLHDNPWD  218 (272)
T ss_dssp             ECCSSCBC
T ss_pred             EccCCCcc
Confidence              455444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.2e-21  Score=163.47  Aligned_cols=167  Identities=19%  Similarity=0.176  Sum_probs=143.2

Q ss_pred             cccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCc
Q 039201           59 QWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYR  128 (258)
Q Consensus        59 ~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~  128 (258)
                      .+..+.|...         .+.++.|++++|++.+..+..+..+++|++|++++|.+++..|..+.++++|++|+ ++|.
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            3556666531         23689999999999988888899999999999999999987778889999999999 8888


Q ss_pred             cCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          129 LGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       129 l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      +++..|..+..+++|++|++++|++++..+ .+..+++|++    |++++|++++..+..++.+++|++|++++|.+++.
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE----LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE----EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            887666778999999999999999996555 6789999999    99999999976666799999999999999999975


Q ss_pred             CCCCchhhhhhcCCCCCccc--cccccccc
Q 039201          208 TTSDLDFITLLRNCSKLKTL--QYNQLTGT  235 (258)
Q Consensus       208 ~p~~~~~~~~l~~l~~L~~L--~~N~l~g~  235 (258)
                      .      +..+.++++|++|  ++|++++.
T Consensus       171 ~------~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 P------HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             C------TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             C------HHHHhCCCCCCEEEeeCCceeCC
Confidence            2      3467778888887  89999876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=6.2e-22  Score=184.42  Aligned_cols=176  Identities=18%  Similarity=0.147  Sum_probs=98.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-cCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-VGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +++.+++++|.+.+..|..+..+++|++|++++|.+.+..|.. +.++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence            4455555555554444445555555555555555555444332 45555555555 455555555555555566666666


Q ss_pred             cccccccc-c--c-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCC
Q 039201          149 AENNFSGT-L--R-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKL  224 (258)
Q Consensus       149 ~~n~l~g~-~--p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L  224 (258)
                      ++|++++. +  + .+..+++|++    +++++|++++..|..++.+++|++|++++|.+++.      .|..+.+++.|
T Consensus       457 ~~n~l~~~~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~l~~l~~L  526 (606)
T 3t6q_A          457 QGNHFPKGNIQKTNSLQTLGRLEI----LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS------SIEALSHLKGI  526 (606)
T ss_dssp             TTCBCGGGEECSSCGGGGCTTCCE----EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG------GGGGGTTCCSC
T ss_pred             CCCCCCccccccchhhccCCCccE----EECCCCccCccChhhhccccCCCEEECCCCccCcC------ChhHhCccccc
Confidence            66655541 1  1 3455555665    66666666655556666666666666666666654      34455555555


Q ss_pred             ccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          225 KTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       225 ~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                       +|  ++|++++..|..+..+++|+++++++|+++
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence             55  666666555555666666666666666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=176.45  Aligned_cols=176  Identities=20%  Similarity=0.185  Sum_probs=131.6

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC------------------
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG------------------  131 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g------------------  131 (258)
                      +++.|++++|.+.+..+..+..+++|++|+|++|.+++..+..+.++++|++|+ ++|.+.+                  
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            677777777777665556677777777777777776643334566666666666 4444432                  


Q ss_pred             ------CCCc-ccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201          132 ------KIPE-SLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL  204 (258)
Q Consensus       132 ------~ip~-~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l  204 (258)
                            .+|+ .+.++++|++|++++|+++ .+|.+..+++|++    |++++|++++..|..+..+++|+.|++++|.+
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDE----LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCE----EECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCE----EECCCCccCccChhhhccCccCCEEECCCCce
Confidence                  2222 3556666677777777666 5566667777777    99999999998899999999999999999999


Q ss_pred             CccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          205 GIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       205 ~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ++.      .+..+.++++|+.|  ++|++++..+..+..+++|+.|+|++|.+.
T Consensus       244 ~~~------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          244 QVI------ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CEE------CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             eEE------ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            986      34567888888888  999999766777899999999999999864

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.1e-21  Score=183.00  Aligned_cols=176  Identities=19%  Similarity=0.170  Sum_probs=129.4

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ++++.|++++|.+.+..|..++.+++|++|++++|.+++..+..++++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus        99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B           99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  178 (597)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEEC
Confidence            4789999999999987777889999999999999999844344468999999999 888888888888999999999999


Q ss_pred             cccccccccc-c-----------------------------------------------------------ccCCCCcce
Q 039201          149 AENNFSGTLR-S-----------------------------------------------------------IFNISSLEF  168 (258)
Q Consensus       149 ~~n~l~g~~p-~-----------------------------------------------------------~~~l~~L~~  168 (258)
                      ++|.+++.-+ .                                                           +..+++|++
T Consensus       179 ~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~  258 (597)
T 3oja_B          179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVE  258 (597)
T ss_dssp             TTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred             cCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCE
Confidence            9998875321 1                                                           233444555


Q ss_pred             ecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCC
Q 039201          169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNL  246 (258)
Q Consensus       169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L  246 (258)
                          |++++|.+++..|..++.+++|++|++++|.+++       +|..+..+++|+.|  ++|+++ .+|..++.+++|
T Consensus       259 ----L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          259 ----VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             ----EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             ----EECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-------CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence                6666666666666666677777777777776665       33444555666666  667776 566666666777


Q ss_pred             CeEeccCCcCC
Q 039201          247 QAPDLSENNLN  257 (258)
Q Consensus       247 ~~L~Ls~N~l~  257 (258)
                      ++|+|++|+++
T Consensus       327 ~~L~L~~N~l~  337 (597)
T 3oja_B          327 ENLYLDHNSIV  337 (597)
T ss_dssp             SEEECCSSCCC
T ss_pred             CEEECCCCCCC
Confidence            77777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.9e-22  Score=172.28  Aligned_cols=173  Identities=19%  Similarity=0.194  Sum_probs=118.3

Q ss_pred             cEEEEEcCCCCCcccCCccC--CCCCCCCEEEccCCCCcCCCC----cccCCCCCCcEEc-CCCccCCCCCcccCCCCCC
Q 039201           71 RVTKLDLRSKSIGGFLSPFV--GNPSFVRVIVLANNSYYGEIP----NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSI  143 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~--~~l~~L~~L~Ls~n~l~g~~p----~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L  143 (258)
                      +++.+++++|.+.+..|..+  ..+++|++|++++|.+++..|    ..+..+++|++|+ ++|.+.+..|..++++++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            58999999999999888887  899999999999999987666    3345788999999 8888888777888999999


Q ss_pred             CEEEccccccccc--cc---cccCCCCcceecceeecCCCccccccCc----cccCCCCCCeEecCCCcCCccCCCCchh
Q 039201          144 NYLILAENNFSGT--LR---SIFNISSLEFQSSETEKSKNRFTGKLGI----DFNSLINLARLNLGQKNLGIGTTSDLDF  214 (258)
Q Consensus       144 ~~L~L~~n~l~g~--~p---~~~~l~~L~~l~l~L~l~~n~~~g~ip~----~~~~l~~L~~L~ls~N~l~g~~p~~~~~  214 (258)
                      ++|++++|++.+.  ++   .+..+++|++    |++++|+++ .+|.    .++.+++|++|++++|.+++.+|..   
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~----L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~---  243 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQN----LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS---  243 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCS----CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC---
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCE----EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhh---
Confidence            9999999988753  32   3467888888    666666664 2222    1345566666666666666643322   


Q ss_pred             hhhhcCC---CCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          215 ITLLRNC---SKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       215 ~~~l~~l---~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                         +..+   ++|++|  ++|+++ .+|..+.  ++|++|+|++|+++
T Consensus       244 ---~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          244 ---APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             ---CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             ---HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence               2222   234443  555555 4454442  45555555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.87  E-value=5.7e-22  Score=181.55  Aligned_cols=154  Identities=25%  Similarity=0.203  Sum_probs=127.9

Q ss_pred             CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC--CCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201           91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG--KIPESLGQLGSINYLILAENNFSGTLR--SIFNISS  165 (258)
Q Consensus        91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g--~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~  165 (258)
                      ..+++|++|++++|.+++.+|..++++++|++|+ ++|.+.+  .+|..++++++|++|++++|++++.+|  .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            6778888888888888888888888888888888 7777776  566778888888888888888887677  4777888


Q ss_pred             cceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh-hcC
Q 039201          166 LEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT-TGE  242 (258)
Q Consensus       166 L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~-l~~  242 (258)
                      |++    +++++|++++.+|..+.  ++|++|++++|.++.       +|..+.++++|++|  ++|+++ .+|.. +..
T Consensus       401 L~~----L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-------ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~  466 (520)
T 2z7x_B          401 LLS----LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-------IPKQVVKLEALQELNVASNQLK-SVPDGIFDR  466 (520)
T ss_dssp             CCE----EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-------CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             CCE----EECcCCCCCcchhhhhc--ccCCEEECCCCcccc-------cchhhhcCCCCCEEECCCCcCC-ccCHHHhcc
Confidence            888    88888888888877654  688899999988883       56677788888888  899999 68876 889


Q ss_pred             CCCCCeEeccCCcCCC
Q 039201          243 LRNLQAPDLSENNLNA  258 (258)
Q Consensus       243 l~~L~~L~Ls~N~l~G  258 (258)
                      +++|++|++++|++++
T Consensus       467 l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          467 LTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CTTCCEEECCSSCBCC
T ss_pred             CCcccEEECcCCCCcc
Confidence            9999999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=2e-21  Score=181.01  Aligned_cols=181  Identities=19%  Similarity=0.173  Sum_probs=104.7

Q ss_pred             CcEEEEEcCCCCCcccCCc-cCCCCCCCCEEEccCCCCcCCC--CcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCE
Q 039201           70 PRVTKLDLRSKSIGGFLSP-FVGNPSFVRVIVLANNSYYGEI--PNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINY  145 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~-~~~~l~~L~~L~Ls~n~l~g~~--p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~  145 (258)
                      ++++.+++++|.+.+.+|. .+..+++|++|++++|.+.+..  |..+.++++|++|+ ++|.+.+..|..+.++++|++
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  404 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL  404 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred             CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence            3567777777777666654 3667777777777777766543  55566667777776 556666656666666666666


Q ss_pred             EEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCC
Q 039201          146 LILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK  223 (258)
Q Consensus       146 L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~  223 (258)
                      |++++|++++..|  .+.++++|++    +++++|.+++..|..++.+++|++|++++|.+++..+.   .+..++.+++
T Consensus       405 L~l~~n~l~~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~l~~  477 (606)
T 3t6q_A          405 LDLAFTRLKVKDAQSPFQNLHLLKV----LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ---KTNSLQTLGR  477 (606)
T ss_dssp             EECTTCCEECCTTCCTTTTCTTCCE----EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC---SSCGGGGCTT
T ss_pred             EECCCCcCCCcccchhhhCcccCCE----EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc---cchhhccCCC
Confidence            6666666665554  3556666666    66666666655566566666666666666666542100   1123344444


Q ss_pred             Cccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          224 LKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       224 L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      |++|  ++|++++..|..++.+++|++|++++|+++
T Consensus       478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  513 (606)
T 3t6q_A          478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT  513 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence            4444  444444444444444444444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.87  E-value=1.1e-21  Score=181.64  Aligned_cols=154  Identities=21%  Similarity=0.218  Sum_probs=131.8

Q ss_pred             CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC--CCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201           91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG--KIPESLGQLGSINYLILAENNFSGTLR--SIFNISS  165 (258)
Q Consensus        91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g--~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~  165 (258)
                      ..+++|++|++++|.+++.+|..++++++|++|+ ++|.+++  .+|..+.++++|++|++++|++++.+|  .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            6788899999999999988888899999999999 7777775  345678899999999999999998677  4778899


Q ss_pred             cceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh-hcC
Q 039201          166 LEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT-TGE  242 (258)
Q Consensus       166 L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~-l~~  242 (258)
                      |++    +++++|++++.+|..+.  ++|++|++++|.++.       +|..+.++++|++|  ++|+++ .+|.. +..
T Consensus       430 L~~----L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-------ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~  495 (562)
T 3a79_B          430 ILV----LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-------IPKDVTHLQALQELNVASNQLK-SVPDGVFDR  495 (562)
T ss_dssp             CCE----EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-------CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT
T ss_pred             CCE----EECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-------cChhhcCCCCCCEEECCCCCCC-CCCHHHHhc
Confidence            999    89999999888887654  789999999999984       55667788888888  999999 78877 899


Q ss_pred             CCCCCeEeccCCcCCC
Q 039201          243 LRNLQAPDLSENNLNA  258 (258)
Q Consensus       243 l~~L~~L~Ls~N~l~G  258 (258)
                      +++|+.|++++|++++
T Consensus       496 l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          496 LTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             CTTCCCEECCSCCBCC
T ss_pred             CCCCCEEEecCCCcCC
Confidence            9999999999999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=2.9e-21  Score=170.88  Aligned_cols=175  Identities=19%  Similarity=0.205  Sum_probs=117.3

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-cCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-VGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      ++++.|++++|.+.+..|..++.+++|++|++++|.++ .+|.. +.++++|++|+ ++|.+.+..|..+.++++|++|+
T Consensus        93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (390)
T 3o6n_A           93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  171 (390)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred             CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence            37888888888888777777888888888888888887 55654 57888888888 77777776677788888888888


Q ss_pred             ccccccccccc-c-----------------------------------------------------------ccCCCCcc
Q 039201          148 LAENNFSGTLR-S-----------------------------------------------------------IFNISSLE  167 (258)
Q Consensus       148 L~~n~l~g~~p-~-----------------------------------------------------------~~~l~~L~  167 (258)
                      +++|++++.-. .                                                           +.++++|+
T Consensus       172 l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~  251 (390)
T 3o6n_A          172 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV  251 (390)
T ss_dssp             CCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             CCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCcc
Confidence            88887764211 1                                                           22334444


Q ss_pred             eecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201          168 FQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN  245 (258)
Q Consensus       168 ~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~  245 (258)
                      +    +++++|++++..|..+..+++|++|++++|.+++       ++..+..+++|++|  ++|+++ .+|..+..+++
T Consensus       252 ~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~  319 (390)
T 3o6n_A          252 E----VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  319 (390)
T ss_dssp             E----EECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             E----EECCCCcCCCcChhHccccccCCEEECCCCcCcc-------cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence            4    5666666665556666666666666666666654       23334445555555  566665 45555555666


Q ss_pred             CCeEeccCCcCC
Q 039201          246 LQAPDLSENNLN  257 (258)
Q Consensus       246 L~~L~Ls~N~l~  257 (258)
                      |++|++++|+++
T Consensus       320 L~~L~L~~N~i~  331 (390)
T 3o6n_A          320 LENLYLDHNSIV  331 (390)
T ss_dssp             CSEEECCSSCCC
T ss_pred             CCEEECCCCccc
Confidence            666666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.86  E-value=6.5e-22  Score=181.17  Aligned_cols=82  Identities=13%  Similarity=0.142  Sum_probs=60.8

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC-CCCcccCCCCCCCEEE
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG-KIPESLGQLGSINYLI  147 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g-~ip~~~~~l~~L~~L~  147 (258)
                      ++++.|++++|.+++..|..++.+++|++|++++|.++ .+|..  .+++|++|+ ++|.+++ .+|..++++++|++|+
T Consensus        45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~  121 (520)
T 2z7x_B           45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG  121 (520)
T ss_dssp             TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred             ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence            36777777777777766777777777777777777776 56665  677777777 6677766 5677777788887777


Q ss_pred             ccccccc
Q 039201          148 LAENNFS  154 (258)
Q Consensus       148 L~~n~l~  154 (258)
                      +++|.++
T Consensus       122 L~~n~l~  128 (520)
T 2z7x_B          122 LSTTHLE  128 (520)
T ss_dssp             EEESSCC
T ss_pred             ecCcccc
Confidence            7777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=1.6e-21  Score=180.56  Aligned_cols=95  Identities=26%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|++++|.+.+..|..+..+++|++|++++|.+++..|..++++++|++|+ ++|.++ .+|..  .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            455555555555544444555555555555555555544444455555555555 444443 34433  44444444444


Q ss_pred             cccccc-ccc-cccCCCCcce
Q 039201          150 ENNFSG-TLR-SIFNISSLEF  168 (258)
Q Consensus       150 ~n~l~g-~~p-~~~~l~~L~~  168 (258)
                      +|++++ .+| .++++++|++
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~  150 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTF  150 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCE
T ss_pred             CCCccccCchHhhcccCcccE
Confidence            444443 233 4444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=8.8e-23  Score=175.75  Aligned_cols=177  Identities=17%  Similarity=0.139  Sum_probs=142.1

Q ss_pred             EEEEEcCCCCC-cccCCccCC-------CCCCCCEEEccCCCCcCCCCccc--CCCCCCcEEc-CCCccCCCCCcccCCC
Q 039201           72 VTKLDLRSKSI-GGFLSPFVG-------NPSFVRVIVLANNSYYGEIPNEV--GCLSRLETLI-GGYRLGGKIPESLGQL  140 (258)
Q Consensus        72 v~~l~l~~~~l-~g~lp~~~~-------~l~~L~~L~Ls~n~l~g~~p~~l--~~l~~L~~L~-~~n~l~g~ip~~~~~l  140 (258)
                      ++.+++++|.+ .+.+|..+.       ++++|++|++++|.++|.+|..+  +.+++|++|+ ++|.+++. |..++.+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            44455666655 344555554       78999999999999999999887  8999999999 88888877 8877777


Q ss_pred             -----CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccc--cCccc--cCCCCCCeEecCCCcCCccCCC
Q 039201          141 -----GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGK--LGIDF--NSLINLARLNLGQKNLGIGTTS  210 (258)
Q Consensus       141 -----~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~--ip~~~--~~l~~L~~L~ls~N~l~g~~p~  210 (258)
                           ++|++|++++|++++..| .++++++|++    +++++|++.|.  +|..+  +.+++|++|++++|.+++..  
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--  217 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST----LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--  217 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE----EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE----EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--
Confidence                 999999999999998887 8999999999    99999998876  34455  88999999999999998420  


Q ss_pred             Cchhh-hhhcCCCCCccc--cccccccccc-hhhcCCCCCCeEeccCCcCC
Q 039201          211 DLDFI-TLLRNCSKLKTL--QYNQLTGTIP-DTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       211 ~~~~~-~~l~~l~~L~~L--~~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~  257 (258)
                        ..+ ..+.++++|++|  ++|++++.+| ..+..+++|++|++++|+++
T Consensus       218 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          218 --GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             --HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             --HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence              022 234567778877  8899988775 45566788899999888875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=9e-22  Score=179.55  Aligned_cols=180  Identities=17%  Similarity=0.114  Sum_probs=94.3

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc--------------
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE--------------  135 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~--------------  135 (258)
                      +++.|++++|.+++..|..+..+++|++|+|++|.+++..|  ++.+++|++|+ ++|.+++..+.              
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~  112 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS  112 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCC
Confidence            56666666666666555566666666666666666665433  55556665555 33322211000              


Q ss_pred             --ccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCcccc-CCCCCCeEecCCCcCCccCCCC
Q 039201          136 --SLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFN-SLINLARLNLGQKNLGIGTTSD  211 (258)
Q Consensus       136 --~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~-~l~~L~~L~ls~N~l~g~~p~~  211 (258)
                        ....+++|++|++++|.+++..| .++.+++|++    |++++|.+++..|..+. .+++|++|++++|.+++..+..
T Consensus       113 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~  188 (487)
T 3oja_A          113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY----LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV  188 (487)
T ss_dssp             CEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEE----EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             CCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCE----EECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc
Confidence              00123445555555555554444 4555555555    55555555554444443 3444444444444444321000


Q ss_pred             c---------------hhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          212 L---------------DFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       212 ~---------------~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      .               .+|+.+..+++|+.|  ++|++++ +|..++.+++|+.|++++|+++
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            0               034445666666666  6677763 6666666777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=171.29  Aligned_cols=182  Identities=23%  Similarity=0.224  Sum_probs=137.5

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-cCCCCCCcEEc-CCCccCCCCCc--ccCCCCCCCE
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-VGCLSRLETLI-GGYRLGGKIPE--SLGQLGSINY  145 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-l~~l~~L~~L~-~~n~l~g~ip~--~~~~l~~L~~  145 (258)
                      ++++.|++++|.+++..|..+..+++|++|++++|.+++ +|.. ++++++|++|+ ++|.+. .+|.  .+.++++|++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI  153 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence            478999999999988777889999999999999999984 5544 78899999998 667776 4555  6788899999


Q ss_pred             EEccccc-cccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCc--------------------
Q 039201          146 LILAENN-FSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN--------------------  203 (258)
Q Consensus       146 L~L~~n~-l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~--------------------  203 (258)
                      |++++|+ +++..| .+.++++|++    +++++|++++..|..++.+++|++|++++|.                    
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEE----LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEE----EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred             EECCCCccccccCHHHccCCCCCCE----EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence            9998884 554445 7888888888    7788888877777777666655555555554                    


Q ss_pred             ----CCccCCCCc-------------------------hhhhhhcCCCCCccc--cccccccccchhh-cCCCCCCeEec
Q 039201          204 ----LGIGTTSDL-------------------------DFITLLRNCSKLKTL--QYNQLTGTIPDTT-GELRNLQAPDL  251 (258)
Q Consensus       204 ----l~g~~p~~~-------------------------~~~~~l~~l~~L~~L--~~N~l~g~ip~~l-~~l~~L~~L~L  251 (258)
                          +++..+..+                         .+|..++++++|++|  ++|+++ .+|..+ ..+++|++|++
T Consensus       230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence                443222111                         145567788888888  889998 777774 88999999999


Q ss_pred             cCCcCCC
Q 039201          252 SENNLNA  258 (258)
Q Consensus       252 s~N~l~G  258 (258)
                      ++|+++|
T Consensus       309 ~~N~~~~  315 (353)
T 2z80_A          309 HTNPWDC  315 (353)
T ss_dssp             CSSCBCC
T ss_pred             eCCCccC
Confidence            9998875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.86  E-value=1.4e-21  Score=180.46  Aligned_cols=178  Identities=24%  Similarity=0.159  Sum_probs=155.6

Q ss_pred             CcEEEEEcCCCCCcccC--CccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCC-cccCCCCCCCE
Q 039201           70 PRVTKLDLRSKSIGGFL--SPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP-ESLGQLGSINY  145 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~l--p~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip-~~~~~l~~L~~  145 (258)
                      ++++.+++++|.+++..  |..+..+++|++|++++|.+.+ +|..+.++++|++|+ ++|.+.+..| ..+.++++|++
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            47888888888887653  6678889999999999999885 454588999999999 7788887766 46889999999


Q ss_pred             EEccccccccccc-cccCCCCcceecceeecCCCccc-cccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCC
Q 039201          146 LILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSK  223 (258)
Q Consensus       146 L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~  223 (258)
                      |++++|.+++..| .+..+++|++    +++++|+++ +.+|..+..+++|++|++++|.+++.      .|..++++++
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~  495 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEV----LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL------SPTAFNSLSS  495 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCE----EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE------CTTTTTTCTT
T ss_pred             EeCcCCcccccchhhhhcCCcCcE----EECcCCcCccccchhhhhcccCCCEEECCCCccccC------ChhhhhcccC
Confidence            9999999998888 8899999999    999999997 68999999999999999999999986      3567888888


Q ss_pred             Cccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          224 LKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       224 L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      |++|  ++|++++..|..+..+++|+.|++++|+++|
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            8888  8999998888889999999999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=8.3e-21  Score=156.50  Aligned_cols=155  Identities=17%  Similarity=0.146  Sum_probs=123.5

Q ss_pred             CCCCCCCCCCccccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCC
Q 039201           48 TSSWKASLNLCQWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLS  118 (258)
Q Consensus        48 ~~~w~~~~~~c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~  118 (258)
                      ...|..+.+.|.|.+|.|+..         .++++.|++++|.+.+..|..+..+++|++|++++|.+....+..+.+++
T Consensus         9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A            9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            345666778999999999752         13688889998888887788888888999999999888643335568888


Q ss_pred             CCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCe
Q 039201          119 RLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLAR  196 (258)
Q Consensus       119 ~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~  196 (258)
                      +|++|+ ++|.+++..+..+..+++|++|++++|+++ .+| .+..+++|++    |++++|++++..+..+..+++|+.
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~  163 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH----LALDQNQLKSIPHGAFDRLSSLTH  163 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSE----EECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCE----EECCCCcCCccCHHHHhCCCCCCE
Confidence            888888 777787655566788889999999999888 777 8888888888    888888888665666888888999


Q ss_pred             EecCCCcCCcc
Q 039201          197 LNLGQKNLGIG  207 (258)
Q Consensus       197 L~ls~N~l~g~  207 (258)
                      |++++|.+...
T Consensus       164 L~l~~N~~~c~  174 (229)
T 3e6j_A          164 AYLFGNPWDCE  174 (229)
T ss_dssp             EECTTSCBCTT
T ss_pred             EEeeCCCccCC
Confidence            99998888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=7e-21  Score=162.46  Aligned_cols=171  Identities=23%  Similarity=0.187  Sum_probs=147.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++++++ .+|+.+.  +.+++|++++|.+++..|..+.++++|++|+ ++|.+++ +|.. +.+++|++|+++
T Consensus        11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G           11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECC
T ss_pred             CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECC
Confidence            7899999999997 5676554  7899999999999987788899999999999 7777775 4443 889999999999


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-  227 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-  227 (258)
                      +|+++ .+| .+..+++|++    |++++|++++..|..+..+++|++|++++|.+++.      .+..+..+++|+.| 
T Consensus        86 ~N~l~-~l~~~~~~l~~L~~----L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           86 HNQLQ-SLPLLGQTLPALTV----LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL------PPGLLTPTPKLEKLS  154 (290)
T ss_dssp             SSCCS-SCCCCTTTCTTCCE----EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEE
T ss_pred             CCcCC-cCchhhccCCCCCE----EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc------ChhhcccccCCCEEE
Confidence            99998 788 8899999999    99999999977778899999999999999999974      23456778888888 


Q ss_pred             -cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                       ++|++++..+..+..+++|++|+|++|+++
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence             999999544455688999999999999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.85  E-value=2.5e-21  Score=182.70  Aligned_cols=171  Identities=18%  Similarity=0.086  Sum_probs=144.8

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +++++|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+ ++|.+++..+..++++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4799999999999987777899999999999999999988888899999999999 778888544447999999999999


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhc--CCCCCc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLR--NCSKLK  225 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~--~l~~L~  225 (258)
                      ++|++++..| .++++++|++    +++++|++++..|..++++++|++|++++|.+++..      +..++  ++++|+
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~~~~~~L~  174 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLIT----LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK------SEELDIFANSSLK  174 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCE----EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC------HHHHGGGTTCEES
T ss_pred             CCCccCccChhHccccCCCCE----EECCCCcccccCchhhcccccCCEEEccCCcccccC------HHHhhcccccccc
Confidence            9999987767 8999999999    999999999998999999999999999999998852      33333  456777


Q ss_pred             cc--cccccccccchhhcCCCCCCeEe
Q 039201          226 TL--QYNQLTGTIPDTTGELRNLQAPD  250 (258)
Q Consensus       226 ~L--~~N~l~g~ip~~l~~l~~L~~L~  250 (258)
                      .|  ++|++++..|..+..+++|+.++
T Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          175 KLELSSNQIKEFSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             EEECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred             EEECCCCcccccChhhhhhhhhhhhhh
Confidence            77  88999988887776654443333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=4.1e-21  Score=174.16  Aligned_cols=183  Identities=19%  Similarity=0.127  Sum_probs=139.1

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ++++.|++++|.+.+..|..+.++++|++|++++|.+++..+..+.++++|++|+ ++|.+.+..|..+.++++|++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            4799999999999988888899999999999999999854445678899999999 788888888888889999999999


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch--------------
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD--------------  213 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~--------------  213 (258)
                      ++|.+++..| .+.++++|++    |++++|++++..+..+..+++|+.|++++|.+++..+..+.              
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQ----LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCE----EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             CCCccceeChhhccCCCCCCE----EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence            9999887777 8888888888    77888887765555677777777777777777664322111              


Q ss_pred             ----hhhhhcCCCCCccc--cccccccccc-hhhcCCCCCCeEeccCCcCC
Q 039201          214 ----FITLLRNCSKLKTL--QYNQLTGTIP-DTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       214 ----~~~~l~~l~~L~~L--~~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~  257 (258)
                          +++......+|+.|  ++|+++ .+| ..+..+++|+.|+|++|+++
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             cccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCC
Confidence                11122222244554  667777 444 56788889999999998875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=2.4e-21  Score=179.46  Aligned_cols=183  Identities=20%  Similarity=0.214  Sum_probs=112.2

Q ss_pred             CCCCCCCCCc-----cccce-eeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcE
Q 039201           49 SSWKASLNLC-----QWTGV-TCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLET  122 (258)
Q Consensus        49 ~~w~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~  122 (258)
                      .+|..+.++|     .|.++ .|...  +++.|++++|++++ +|..+.  ++|++|++++|.++ .+|   ..+++|++
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~~~--~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~  104 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECLIN--QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEY  104 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHHT--TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCE
T ss_pred             HHHhccCCccccccchhhhccccccC--CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCE
Confidence            3455555667     68888 67542  68888888888876 666553  66777777777776 566   34566666


Q ss_pred             Ec-CCCccCCCCCcccCCCCCCCEEEcccccccccccc-c-----------------cCCCCcceecceeecCCCccccc
Q 039201          123 LI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRS-I-----------------FNISSLEFQSSETEKSKNRFTGK  183 (258)
Q Consensus       123 L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~-~-----------------~~l~~L~~l~l~L~l~~n~~~g~  183 (258)
                      |+ ++|.+++ +|. +.+  +|++|++++|++++ +|. +                 ..+++|++    |++++|++++ 
T Consensus       105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~----L~Ls~N~L~~-  174 (571)
T 3cvr_A          105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNNQLTMLPELPTSLEV----LSVRNNQLTF-  174 (571)
T ss_dssp             EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCE----EECCSSCCSC-
T ss_pred             EEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCCccCcCCCcCCCcCE----EECCCCCCCC-
Confidence            66 5555554 555 433  55555555555543 333 0                 02344555    6666666654 


Q ss_pred             cCccccCCCCCCeEecCCCcCCccCCCCchhhhhh-cCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          184 LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLL-RNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       184 ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l-~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      +|. +.  ++|++|++++|.++ .+|.   ++..+ .....|+.|  ++|+++ .+|..+..+++|+.|+|++|+++|
T Consensus       175 lp~-l~--~~L~~L~Ls~N~L~-~lp~---~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          175 LPE-LP--ESLEALDVSTNLLE-SLPA---VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CCC-CC--TTCCEEECCSSCCS-SCCC---CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             cch-hh--CCCCEEECcCCCCC-chhh---HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            555 44  56666666666666 3332   11111 011112555  899998 799999899999999999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.84  E-value=4.1e-21  Score=165.63  Aligned_cols=170  Identities=17%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc-----------------cCCCCCCcEEc-CCCccCCC
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE-----------------VGCLSRLETLI-GGYRLGGK  132 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~-----------------l~~l~~L~~L~-~~n~l~g~  132 (258)
                      +++.|++++|.+++..+  +..+++|++|++++|.+++ +|..                 ...+++|++|+ ++|.+++.
T Consensus        59 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~  135 (317)
T 3o53_A           59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML  135 (317)
T ss_dssp             TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSG
T ss_pred             cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCc
Confidence            55666666666554332  5555555555555555542 1100                 01123344444 44444444


Q ss_pred             CCcccCCCCCCCEEEccccccccccc-cc-cCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCC
Q 039201          133 IPESLGQLGSINYLILAENNFSGTLR-SI-FNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTS  210 (258)
Q Consensus       133 ip~~~~~l~~L~~L~L~~n~l~g~~p-~~-~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~  210 (258)
                      .|..++.+++|++|++++|.+++..| .+ ..+++|++    +++++|++++. |. ...+++|++|++++|.+++    
T Consensus       136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~----L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~----  205 (317)
T 3o53_A          136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH----LNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF----  205 (317)
T ss_dssp             GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE----EECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE----
T ss_pred             cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCE----EECCCCcCccc-cc-ccccccCCEEECCCCcCCc----
Confidence            44455556666666666666665444 33 24566666    66666666533 22 2346667777777777665    


Q ss_pred             CchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          211 DLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       211 ~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                         +|+.+..+++|++|  ++|+++ .+|..+..+++|+.|++++|+++
T Consensus       206 ---l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          206 ---MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ---ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             ---chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence               45557777778777  888888 67888888888999999888875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=1.3e-20  Score=175.36  Aligned_cols=175  Identities=22%  Similarity=0.159  Sum_probs=140.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .+++|||++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+ ++|++++..|..+.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            689999999999977777899999999999999999966667789999999999 8888887666778999999999999


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcc-
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT-  226 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~-  226 (258)
                      +|++++..+ .++++++|++    |++++|++++ .+|..++.+++|++|++++|.+++..|      ..++.+.+++. 
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~----L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~l~~L~~l~~~  202 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKE----LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC------TDLRVLHQMPLL  202 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCE----EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG------GGGHHHHTCTTC
T ss_pred             CCcCCCCChhhhhcCcccCe----eccccCccccCCCchhhccchhhhhhcccCcccccccc------ccccchhhhhhh
Confidence            999997666 7999999999    9999999975 578889999999999999999998643      33443333322 


Q ss_pred             -----ccccccccccchhhcCCCCCCeEeccCCcC
Q 039201          227 -----LQYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       227 -----L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                           ++.|.++. ++........++.+++.+|..
T Consensus       203 ~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~n~~  236 (635)
T 4g8a_A          203 NLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFD  236 (635)
T ss_dssp             CCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCS
T ss_pred             hhhhhcccCcccc-cCcccccchhhhhhhhhcccc
Confidence                 26777774 444444445566677766643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.84  E-value=4.3e-20  Score=174.27  Aligned_cols=178  Identities=17%  Similarity=0.188  Sum_probs=113.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCC-----------------
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGG-----------------  131 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g-----------------  131 (258)
                      .++.+++++|.+.+..|..+..+++|++|++++|.+.+.+| ..+.++++|++|+ ++|.+.+                 
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l  461 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML  461 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence            56777777777777777778888888888888888877666 5667777777777 5555443                 


Q ss_pred             ---------CCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCcccccc----C----ccccCCCC
Q 039201          132 ---------KIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKL----G----IDFNSLIN  193 (258)
Q Consensus       132 ---------~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~i----p----~~~~~l~~  193 (258)
                               .+|..+.++++|++|++++|++++..| .+..+++|++    +++++|++++..    |    ..++.+++
T Consensus       462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~  537 (680)
T 1ziw_A          462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI----LDLQHNNLARLWKHANPGGPIYFLKGLSH  537 (680)
T ss_dssp             TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred             ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE----EeCCCCCccccchhhccCCcchhhcCCCC
Confidence                     345555555556666666665554444 4555555665    556666555321    1    12455566


Q ss_pred             CCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          194 LARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       194 L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      |++|++++|.++. +|     +..++++++|+.|  ++|++++..+..+..+++|+.|++++|++++
T Consensus       538 L~~L~L~~N~l~~-i~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  598 (680)
T 1ziw_A          538 LHILNLESNGFDE-IP-----VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS  598 (680)
T ss_dssp             CCEEECCSSCCCC-CC-----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred             CCEEECCCCCCCC-CC-----HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence            6666666666653 21     1246666777766  7777774444446777888888888887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=3e-20  Score=179.76  Aligned_cols=98  Identities=19%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             cEEEEEcCCCCCcccC-CccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcc--cCCCCCCCEE
Q 039201           71 RVTKLDLRSKSIGGFL-SPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPES--LGQLGSINYL  146 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~l-p~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~--~~~l~~L~~L  146 (258)
                      +++.|++++|...+.+ |..+.++++|++|+|++|.+.+..|..++++++|++|+ ++|.+.+.+|..  ++++++|++|
T Consensus        49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L  128 (844)
T 3j0a_A           49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL  128 (844)
T ss_dssp             SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred             cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEE
Confidence            4555555555444444 33455555555555555555544455555555555555 444555444433  4555555555


Q ss_pred             Eccccccccccc--cccCCCCcce
Q 039201          147 ILAENNFSGTLR--SIFNISSLEF  168 (258)
Q Consensus       147 ~L~~n~l~g~~p--~~~~l~~L~~  168 (258)
                      ++++|.+++..|  .++++++|++
T Consensus       129 ~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A          129 DLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             EEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             ECCCCcccccccchhHhhCCCCCE
Confidence            555555544332  3445555555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=2e-20  Score=172.09  Aligned_cols=178  Identities=19%  Similarity=0.188  Sum_probs=155.9

Q ss_pred             eeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCC
Q 039201           64 TCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGS  142 (258)
Q Consensus        64 ~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~  142 (258)
                      .|...  .+  .+.++++++ .+|+.+.  ++|++|++++|.+++..|..+.++++|++|+ ++|.+.+..|..++++++
T Consensus         3 ~C~~~--~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   75 (549)
T 2z81_A            3 SCDAS--GV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS   75 (549)
T ss_dssp             EECTT--SE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCC--ce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence            56543  23  788999887 6777654  7999999999999988888999999999999 889999888889999999


Q ss_pred             CCEEEccccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcC
Q 039201          143 INYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRN  220 (258)
Q Consensus       143 L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~  220 (258)
                      |++|++++|++++..| .++++++|++    |++++|++++ .+|..++++++|++|++++|.+.+.+|     +..+++
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-----~~~~~~  146 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKY----LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-----RIDFAG  146 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCE----EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-----TTTTTT
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcE----EECCCCcccccchhhhhhccCCccEEECCCCccccccC-----Hhhhhc
Confidence            9999999999998777 6999999999    9999999986 567889999999999999999666543     246888


Q ss_pred             CCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          221 CSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       221 l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +++|++|  ++|++++.+|..++.+++|++|+++.|.++
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  185 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA  185 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence            8888888  899999999999999999999999999764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=6.9e-20  Score=154.63  Aligned_cols=169  Identities=15%  Similarity=0.098  Sum_probs=135.0

Q ss_pred             cCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccc
Q 039201           77 LRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSG  155 (258)
Q Consensus        77 l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g  155 (258)
                      ..+.++. .+|..+.  +.|++|++++|.+++..+..+.++++|++|+ ++|.+.+..+..+.++++|++|++++|++++
T Consensus        14 c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             CTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             ecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            3344443 4565443  5799999999999976666899999999999 7888887667789999999999999999998


Q ss_pred             ccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccc
Q 039201          156 TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQL  232 (258)
Q Consensus       156 ~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l  232 (258)
                      ..| .+.++++|++    +++++|++.+..+..++.+++|++|++++|.+++.     .+|..++++++|++|  ++|++
T Consensus        91 ~~~~~~~~l~~L~~----L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A           91 LALGAFSGLSSLQK----LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             ECTTTTTTCTTCCE----EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECCSSCC
T ss_pred             cChhhhcCCccccE----EECCCCCccccCchhcccCCCCCEEECcCCcccee-----cCchhhccCCCCCEEECCCCCC
Confidence            777 8999999999    99999999977776899999999999999999873     145678888888887  88888


Q ss_pred             ccccchhhcCCCCCC----eEeccCCcCC
Q 039201          233 TGTIPDTTGELRNLQ----APDLSENNLN  257 (258)
Q Consensus       233 ~g~ip~~l~~l~~L~----~L~Ls~N~l~  257 (258)
                      ++..+..+..+++|+    .|++++|+++
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCccc
Confidence            866555555444444    5566665554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=3e-20  Score=171.46  Aligned_cols=175  Identities=22%  Similarity=0.204  Sum_probs=152.3

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ++++.|++++|.+++..+..+..+++|++|++++|.+++..|..++++++|++|+ ++|.+.+..|..++++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            3799999999999988888999999999999999999977778899999999999 888888877789999999999999


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCcccc-ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCC--
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTG-KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKL--  224 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g-~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L--  224 (258)
                      ++|++++..+ .++++++|++    |++++|.+++ .+|..++++++|++|++++|.+++.      .+..++.+++|  
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~----L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~  177 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKE----LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVLHQMPL  177 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCE----EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE------CGGGGHHHHTCTT
T ss_pred             cccccccCCCccccccccccE----EecCCCccceecChhhhcccCCCCEEeCcCCcccee------cHHHccchhccch
Confidence            9999986555 7999999999    9999999987 5899999999999999999999885      24456666665  


Q ss_pred             --ccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201          225 --KTL--QYNQLTGTIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       225 --~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                        +.+  ++|.+++..|..+... +|+.|++++|.
T Consensus       178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~  211 (570)
T 2z63_A          178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF  211 (570)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred             hhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence              444  8999998777777655 89999998884

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=4.9e-21  Score=164.58  Aligned_cols=174  Identities=18%  Similarity=0.115  Sum_probs=142.7

Q ss_pred             CcEEEEEcCCCCCcccCC----ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCC--CC--cccCCC
Q 039201           70 PRVTKLDLRSKSIGGFLS----PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGK--IP--ESLGQL  140 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp----~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~--ip--~~~~~l  140 (258)
                      ++++.|++++|.+.+..+    ..+..+++|++|++++|.+.+..|..++++++|++|+ ++|.+.+.  ++  ..++.+
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            378999999999988655    3556899999999999999988888899999999999 77877753  32  334789


Q ss_pred             CCCCEEEcccccccc--ccc-c-ccCCCCcceecceeecCCCccccccCccccCC---CCCCeEecCCCcCCccCCCCch
Q 039201          141 GSINYLILAENNFSG--TLR-S-IFNISSLEFQSSETEKSKNRFTGKLGIDFNSL---INLARLNLGQKNLGIGTTSDLD  213 (258)
Q Consensus       141 ~~L~~L~L~~n~l~g--~~p-~-~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l---~~L~~L~ls~N~l~g~~p~~~~  213 (258)
                      ++|++|++++|+++.  ..+ . +.++++|++    |++++|++.+.+|..++.+   ++|++|++++|.++ .+|..  
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~----L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~--  269 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHS----LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKG--  269 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS----EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSC--
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCE----EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhh--
Confidence            999999999999972  222 2 468899999    9999999999889888887   69999999999999 45543  


Q ss_pred             hhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          214 FITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       214 ~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                          +.  ++|+.|  ++|++++ +|. +..+++|+.|++++|+++.
T Consensus       270 ----~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          270 ----LP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ----CC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             ----hc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence                22  466666  9999995 343 5788999999999999863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=6.8e-20  Score=148.43  Aligned_cols=166  Identities=19%  Similarity=0.150  Sum_probs=136.3

Q ss_pred             EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      +.++.+++++. .+|..+  .++|++|++++|.+++..+..+.++++|++|+ ++|.+.+..+..+.++++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            57788888876 456544  56899999999999965556678999999999 778888655556789999999999999


Q ss_pred             ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201          152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q  228 (258)
Q Consensus       152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~  228 (258)
                      ++++..+ .+.++++|++    +++++|++++..+..+..+++|++|++++|.+++.      .+..+.++++|++|  +
T Consensus        87 ~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKE----LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV------PDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC------CTTTTTTCTTCCEEECC
T ss_pred             cCCccCHhHhcCccCCCE----EEcCCCcCcccCHhHhccCCcCCEEECCCCcccee------CHHHhccCCCccEEEec
Confidence            9996555 6789999999    99999999977676789999999999999999974      22347778888887  8


Q ss_pred             ccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          229 YNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      +|.+.+.       +++|++|+++.|+++|
T Consensus       157 ~N~~~~~-------~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          157 DNPWDCT-------CPGIRYLSEWINKHSG  179 (208)
T ss_dssp             SCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred             CCCeecC-------CCCHHHHHHHHHhCCc
Confidence            8887754       4578888888888876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=8.8e-20  Score=156.83  Aligned_cols=166  Identities=16%  Similarity=0.275  Sum_probs=135.4

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ++++.|++++|.+.+. ++ +..+++|++|++++|.+++ +| .+.++++|++|+ ++|.+.+ +|. +..+++|++|++
T Consensus        63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            4789999999988754 44 8899999999999999875 44 588899999999 7777775 554 889999999999


Q ss_pred             cccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201          149 AENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-  227 (258)
Q Consensus       149 ~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-  227 (258)
                      ++|++++. +.+..+++|++    |++++|++++ ++. +..+++|++|++++|.+++.       ++ +..+++|++| 
T Consensus       137 ~~n~l~~~-~~l~~l~~L~~----L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-------~~-l~~l~~L~~L~  201 (308)
T 1h6u_A          137 DLNQITNI-SPLAGLTNLQY----LSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-------SP-LASLPNLIEVH  201 (308)
T ss_dssp             CSSCCCCC-GGGGGCTTCCE----EECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-------GG-GGGCTTCCEEE
T ss_pred             CCCccCcC-ccccCCCCccE----EEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-------hh-hcCCCCCCEEE
Confidence            99998854 44778899999    8999999885 444 88899999999999999873       22 7788888888 


Q ss_pred             -cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          228 -QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       228 -~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                       ++|++++..  .+..+++|+.|++++|++++
T Consensus       202 L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          202 LKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             ccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence             899998544  37889999999999998764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=9.3e-20  Score=155.50  Aligned_cols=164  Identities=20%  Similarity=0.258  Sum_probs=141.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.++++++.+.. ++ .+..+++|++|++++|.+++ +++ +.++++|++|+ ++|.+.+ +| .+..+++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             cccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            78999999999875 34 48899999999999999986 444 89999999999 7777775 44 49999999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|++++ ++.+..+++|++    |++++|++++.  ..++.+++|++|++++|.+++.       ++ +..+++|++|  
T Consensus       121 ~n~i~~-~~~l~~l~~L~~----L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-------~~-l~~l~~L~~L~L  185 (291)
T 1h6t_A          121 HNGISD-INGLVHLPQLES----LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLYL  185 (291)
T ss_dssp             TSCCCC-CGGGGGCTTCCE----EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEEC
T ss_pred             CCcCCC-ChhhcCCCCCCE----EEccCCcCCcc--hhhccCCCCCEEEccCCccccc-------hh-hcCCCccCEEEC
Confidence            999985 577889999999    99999999864  5689999999999999999884       33 8888888888  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ++|++++ +| .+..+++|+.|++++|+++
T Consensus       186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          186 SKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            8999985 55 4899999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=1.6e-19  Score=155.12  Aligned_cols=165  Identities=22%  Similarity=0.275  Sum_probs=142.3

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|+++++++.. ++ .+..+++|++|++++|.+.+ ++. +.++++|++|+ ++|.+.+ +| .+..+++|++|+++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence            79999999999874 55 58899999999999999985 555 89999999999 7777775 44 69999999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|++++ +|.+..+++|++    |++++|++++. +. ++.+++|++|++++|.+++.       ++ +.++++|+.|  
T Consensus       116 ~n~l~~-~~~l~~l~~L~~----L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-------~~-l~~l~~L~~L~l  180 (308)
T 1h6u_A          116 STQITD-VTPLAGLSNLQV----LYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-------TP-LANLSKLTTLKA  180 (308)
T ss_dssp             TSCCCC-CGGGTTCTTCCE----EECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEEC
T ss_pred             CCCCCC-chhhcCCCCCCE----EECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-------hh-hcCCCCCCEEEC
Confidence            999985 566889999999    99999999854 43 88999999999999999873       33 8888888888  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++|++++ +|. +..+++|++|++++|++++
T Consensus       181 ~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          181 DDNKISD-ISP-LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             CSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             CCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence            8999985 443 8899999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=5e-20  Score=171.45  Aligned_cols=170  Identities=15%  Similarity=0.096  Sum_probs=141.6

Q ss_pred             EcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccc
Q 039201           76 DLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFS  154 (258)
Q Consensus        76 ~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~  154 (258)
                      +-++.+++ .+|+.+.  +.+++|||++|.+++..|..|.++++|++|+ ++|++++..|..|.++++|++|+|++|+++
T Consensus        37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            44455665 5676542  5799999999999966667899999999999 888888766778999999999999999999


Q ss_pred             cccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccc
Q 039201          155 GTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQ  231 (258)
Q Consensus       155 g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~  231 (258)
                      +..| .+.++++|++    |++++|++++..+..++++++|++|++++|.+++..     .|..++++++|++|  ++|+
T Consensus       114 ~l~~~~f~~L~~L~~----L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          114 SLALGAFSGLSSLQK----LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             EECGGGGTTCTTCCE----EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSC
T ss_pred             CCCHHHhcCCCCCCE----EECCCCcCCCCChhhhhcCcccCeeccccCccccCC-----CchhhccchhhhhhcccCcc
Confidence            7666 7899999999    999999999766677999999999999999997631     46778888999988  9999


Q ss_pred             cccccchhhcCCCCC----CeEeccCCcCC
Q 039201          232 LTGTIPDTTGELRNL----QAPDLSENNLN  257 (258)
Q Consensus       232 l~g~ip~~l~~l~~L----~~L~Ls~N~l~  257 (258)
                      +++..|..+..+.++    ..++++.|+++
T Consensus       185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             ccccccccccchhhhhhhhhhhhcccCccc
Confidence            998888887665544    46888888875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=148.37  Aligned_cols=151  Identities=15%  Similarity=0.135  Sum_probs=119.7

Q ss_pred             EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      .++++++.++ .+|..+.  ..+++|++++|.+++..| ..+.++++|++|+ ++|.+++..|..+.++++|++|+|++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            5667777776 4676553  456899999999987655 3478899999998 778888766778889999999999999


Q ss_pred             ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201          152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q  228 (258)
Q Consensus       152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~  228 (258)
                      ++++..| .+..+++|++    |++++|++++..|..+..+++|++|++++|.+++..      |..+..+++|+.|  +
T Consensus        92 ~l~~~~~~~~~~l~~L~~----L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKT----LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA------PGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCE----EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC------TTTTTTCTTCCEEECC
T ss_pred             ccCccCHhHhcCCcCCCE----EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC------HHHhcCCCCCCEEEec
Confidence            9987666 6888999999    889999998888888888999999999999888752      4556666777666  7


Q ss_pred             ccccccccc
Q 039201          229 YNQLTGTIP  237 (258)
Q Consensus       229 ~N~l~g~ip  237 (258)
                      +|.+++..+
T Consensus       162 ~N~l~c~c~  170 (220)
T 2v70_A          162 ANPFNCNCY  170 (220)
T ss_dssp             SCCEECSGG
T ss_pred             CcCCcCCCc
Confidence            777776544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=2.1e-19  Score=147.25  Aligned_cols=148  Identities=18%  Similarity=0.209  Sum_probs=126.4

Q ss_pred             CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201           56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G  125 (258)
Q Consensus        56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~  125 (258)
                      ..|.|..+.|....         +.++.|++++|++.+..+..+..+++|++|+|++|.+++..|..+.++++|++|+ +
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            45789999997422         3689999999999877777899999999999999999987788899999999999 7


Q ss_pred             CCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcC
Q 039201          126 GYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNL  204 (258)
Q Consensus       126 ~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l  204 (258)
                      +|.++...+..+.++++|++|+|++|++++..| .+..+++|++    |++++|++++..+..+..+++|++|++++|.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL----LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE----EECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            788875444456889999999999999998777 8889999999    99999999977777788999999999999988


Q ss_pred             Ccc
Q 039201          205 GIG  207 (258)
Q Consensus       205 ~g~  207 (258)
                      ...
T Consensus       165 ~c~  167 (220)
T 2v9t_B          165 ICD  167 (220)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.81  E-value=1.3e-19  Score=145.75  Aligned_cols=150  Identities=13%  Similarity=0.198  Sum_probs=91.6

Q ss_pred             CCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201           91 GNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF  168 (258)
Q Consensus        91 ~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~  168 (258)
                      +.+++|++|++++|.+. .+| .+..+++|++|+ ++|.+  ..++.+..+++|++|++++|++++..| .+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC--SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC--CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34445555555555555 444 355555555555 33322  223356666777777777777766555 6666777777


Q ss_pred             ecceeecCCCccccccCccccCCCCCCeEecCCCc-CCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCC
Q 039201          169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN-LGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRN  245 (258)
Q Consensus       169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~  245 (258)
                          |++++|++++..|..++.+++|++|++++|. ++.       + +.+.++++|++|  ++|++++ ++ .+..+++
T Consensus       117 ----L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-------~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~  182 (197)
T 4ezg_A          117 ----LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-------I-MPLKTLPELKSLNIQFDGVHD-YR-GIEDFPK  182 (197)
T ss_dssp             ----EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-------C-GGGGGCSSCCEEECTTBCCCC-CT-TGGGCSS
T ss_pred             ----EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-------c-HhhcCCCCCCEEECCCCCCcC-hH-HhccCCC
Confidence                6677777766666666777777777777776 433       2 246666666666  6677764 44 6777888


Q ss_pred             CCeEeccCCcCCC
Q 039201          246 LQAPDLSENNLNA  258 (258)
Q Consensus       246 L~~L~Ls~N~l~G  258 (258)
                      |++|++++|++.+
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            8889998888754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.9e-19  Score=147.53  Aligned_cols=149  Identities=20%  Similarity=0.222  Sum_probs=132.7

Q ss_pred             CCccccceeeCCCC---------CcEEEEEcCCCCCcccCC-ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-
Q 039201           56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLS-PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-  124 (258)
Q Consensus        56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp-~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-  124 (258)
                      ..|.|..+.|+...         ..++.|++++|.+++..+ ..+..+++|++|++++|.+++..|..+.++++|++|+ 
T Consensus         9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A            9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            45789989887421         257899999999998755 4588999999999999999977777899999999999 


Q ss_pred             CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCc
Q 039201          125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN  203 (258)
Q Consensus       125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~  203 (258)
                      ++|.+++..|..+.++++|++|+|++|++++..| .+..+++|++    |++++|++++..|..+..+++|++|++++|.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL----LSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE----EECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE----EECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            8899988777789999999999999999998888 8999999999    9999999998889999999999999999999


Q ss_pred             CCccC
Q 039201          204 LGIGT  208 (258)
Q Consensus       204 l~g~~  208 (258)
                      +.+..
T Consensus       165 l~c~c  169 (220)
T 2v70_A          165 FNCNC  169 (220)
T ss_dssp             EECSG
T ss_pred             CcCCC
Confidence            98764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=3.3e-19  Score=154.40  Aligned_cols=105  Identities=17%  Similarity=0.099  Sum_probs=54.9

Q ss_pred             CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhc
Q 039201          141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLR  219 (258)
Q Consensus       141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~  219 (258)
                      ++|++|++++|.+++..| .+..+++|++    +++++|++++..|..+..+++|++|++++|.++.       +|..+.
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------lp~~l~  261 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLLRYSKLYR----LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-------VPAGLP  261 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSSTTCTTCSC----CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-------CCTTGG
T ss_pred             CCCCEEECCCCcCCccCHHHhcCCCCCCE----EECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-------cChhhh
Confidence            345555555555554444 5555566666    5566666655555555566666666666666552       334445


Q ss_pred             CCCCCccc--cccccccccchhhcC------CCCCCeEeccCCcC
Q 039201          220 NCSKLKTL--QYNQLTGTIPDTTGE------LRNLQAPDLSENNL  256 (258)
Q Consensus       220 ~l~~L~~L--~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l  256 (258)
                      ++++|++|  ++|++++..+..+..      ..+|+.+++++|++
T Consensus       262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            55555555  555555333333322      23455555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=5.5e-19  Score=145.56  Aligned_cols=159  Identities=21%  Similarity=0.169  Sum_probs=128.8

Q ss_pred             ccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccC
Q 039201           60 WTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLG  138 (258)
Q Consensus        60 w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~  138 (258)
                      |..-.|+     .+.++.+++++. .+|..+.  ++|++|++++|.+++..|..+.++++|++|+ ++|.+.+..+..+.
T Consensus        14 ~~~~~Cs-----~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           14 PSQCSCS-----GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             CTTCEEE-----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCEEe-----CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence            4455664     356889888886 6776554  8999999999999988888899999999999 77887654445678


Q ss_pred             CCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhh
Q 039201          139 QLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITL  217 (258)
Q Consensus       139 ~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~  217 (258)
                      ++++|++|+|++|++++..+ .+..+++|++    |++++|+++ .+|..+..+++|++|++++|.+++..      +..
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~----L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~------~~~  154 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE----LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP------HGA  154 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC------TTT
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCe----EeccCCccc-ccCcccccCCCCCEEECCCCcCCccC------HHH
Confidence            99999999999999996656 6788999999    999999998 88999999999999999999998631      244


Q ss_pred             hcCCCCCccc--cccccccccc
Q 039201          218 LRNCSKLKTL--QYNQLTGTIP  237 (258)
Q Consensus       218 l~~l~~L~~L--~~N~l~g~ip  237 (258)
                      +..+++|+.|  ++|.+++..+
T Consensus       155 ~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCTTBG
T ss_pred             HhCCCCCCEEEeeCCCccCCcc
Confidence            6667777776  7888776544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=4.6e-19  Score=153.32  Aligned_cols=172  Identities=15%  Similarity=0.134  Sum_probs=104.2

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCc--CCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYY--GEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~--g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      .++.|++++|.+.+..+..+..+++|++|++++|.+.  |..+..+.++++|++|+ ++|.++ .+|..+.  ++|++|+
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~  198 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH  198 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence            3444444444444443444566666777777766664  24555566667777666 444444 3444432  5666677


Q ss_pred             ccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcc
Q 039201          148 LAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT  226 (258)
Q Consensus       148 L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~  226 (258)
                      +++|++++..| .+..+++|++    |++++|++++..+..+..+++|++|++++|.++.       +|..+..+++|++
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~----L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------lp~~l~~l~~L~~  267 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAK----LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-------VPGGLADHKYIQV  267 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCE----EECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-------CCTTTTTCSSCCE
T ss_pred             CCCCcCCccCHHHhcCCCCCCE----EECCCCcCceeChhhccCCCCCCEEECCCCcCcc-------CChhhccCCCcCE
Confidence            77777666556 6667777777    7777777776666667777777777777777763       3455666666666


Q ss_pred             c--cccccccccchhhcC------CCCCCeEeccCCcC
Q 039201          227 L--QYNQLTGTIPDTTGE------LRNLQAPDLSENNL  256 (258)
Q Consensus       227 L--~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l  256 (258)
                      |  ++|++++..+..+..      .+.++.+++++|.+
T Consensus       268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             EECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            6  666666433333322      25566666666655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.8e-19  Score=158.21  Aligned_cols=170  Identities=18%  Similarity=0.168  Sum_probs=126.6

Q ss_pred             EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccC-CCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-CLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~-~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      .++++++++. .+|..+.  ..+++|+|++|.+++..+..+. ++++|++|+ ++|.+++..|..+.++++|++|+|++|
T Consensus        22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            4556666665 3565443  4578888888888865556666 888888888 777787766677888888888888888


Q ss_pred             ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhh-h---cCCCCCcc
Q 039201          152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITL-L---RNCSKLKT  226 (258)
Q Consensus       152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~-l---~~l~~L~~  226 (258)
                      ++++..+ .+..+++|++    |++++|++++..|..+..+++|++|++++|.+++       +|.. +   .++++|+.
T Consensus        99 ~l~~~~~~~~~~l~~L~~----L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~~~~~l~~L~~  167 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEV----LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-------FPVELIKDGNKLPKLML  167 (361)
T ss_dssp             CCCEECTTTTTTCTTCCE----EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-------CCGGGTC----CTTCCE
T ss_pred             cCCcCCHHHhCCCcCCCE----EECCCCcccEECHHHhCCcccCCEEECCCCcCCe-------eCHHHhcCcccCCcCCE
Confidence            8886656 6788888888    8888888887778888888888888888888886       2332 2   56777777


Q ss_pred             c--cccccccccchhhcCCCC--CCeEeccCCcCC
Q 039201          227 L--QYNQLTGTIPDTTGELRN--LQAPDLSENNLN  257 (258)
Q Consensus       227 L--~~N~l~g~ip~~l~~l~~--L~~L~Ls~N~l~  257 (258)
                      |  ++|++++..+..+..+++  ++.|+|++|.++
T Consensus       168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             EECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            6  888888544466777776  478888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=5.4e-19  Score=144.75  Aligned_cols=149  Identities=18%  Similarity=0.173  Sum_probs=118.1

Q ss_pred             EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      +.+++++++++ .+|..+.  +.|++|++++|.+++..+..+.++++|++|+ ++|.+++..|..+.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            46888898887 5676554  7899999999999866666788899999998 888888877888999999999999999


Q ss_pred             ccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201          152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q  228 (258)
Q Consensus       152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~  228 (258)
                      +++...+ .+..+++|++    |++++|++++..|..+..+++|++|++++|.+++..      +..+..+++|++|  +
T Consensus        91 ~l~~l~~~~f~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQL----LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA------KGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCE----EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECC
T ss_pred             cCCccCHhHccCCCCCCE----EECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC------HHHHhCCCCCCEEEeC
Confidence            9984434 5678899999    889999998888888888999999999999888742      2345556666655  6


Q ss_pred             cccccc
Q 039201          229 YNQLTG  234 (258)
Q Consensus       229 ~N~l~g  234 (258)
                      +|++..
T Consensus       161 ~N~~~c  166 (220)
T 2v9t_B          161 QNPFIC  166 (220)
T ss_dssp             SSCEEC
T ss_pred             CCCcCC
Confidence            666653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=2.6e-20  Score=177.48  Aligned_cols=195  Identities=20%  Similarity=0.212  Sum_probs=127.1

Q ss_pred             hHHHHHHHHHhC-CCCCCCCCCCCC-CCCCccccceeeCCCCCcEEEEEcC------------------CCCCcc-----
Q 039201           30 KTDHLLAIKSQL-QDPLGPTSSWKA-SLNLCQWTGVTCSHRHPRVTKLDLR------------------SKSIGG-----   84 (258)
Q Consensus        30 ~~~aL~~~~~~~-~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~l~l~------------------~~~l~g-----   84 (258)
                      +++++.+++.++ ...+.....|.. ....+.|.++.++.  ++++.+++.                  .+.+.+     
T Consensus       133 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~  210 (727)
T 4b8c_D          133 TKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIE  210 (727)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-------------------------------------------------------------
T ss_pred             chhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCccccc
Confidence            344899998877 222333445643 33556787776654  244444443                  333322     


Q ss_pred             ----cCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-
Q 039201           85 ----FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-  158 (258)
Q Consensus        85 ----~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-  158 (258)
                          ..+..+..+..|++|+|++|.+. .+|..+.++++|++|+ ++|.++ .+|..++++++|++|+|++|.++ .+| 
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~  287 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA  287 (727)
T ss_dssp             -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS
T ss_pred             cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh
Confidence                23566888999999999999998 8998899999999999 778888 89999999999999999999999 889 


Q ss_pred             cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCC---ccccccccccc
Q 039201          159 SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKL---KTLQYNQLTGT  235 (258)
Q Consensus       159 ~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L---~~L~~N~l~g~  235 (258)
                      .++++++|++    |+|++|.++ .+|..++.+++|++|+|++|.+++.      .|..+..+...   .+|++|.++|.
T Consensus       288 ~~~~l~~L~~----L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~------~p~~~~~~~~~~~~l~l~~N~l~~~  356 (727)
T 4b8c_D          288 ELGSCFQLKY----FYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQ------FLKILTEKSVTGLIFYLRDNRPEIP  356 (727)
T ss_dssp             SGGGGTTCSE----EECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSH------HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             hhcCCCCCCE----EECCCCCCC-ccChhhhcCCCccEEeCCCCccCCC------ChHHHhhcchhhhHHhhccCcccCc
Confidence            9999999999    999999997 8899999999999999999999997      34444433211   12478888888


Q ss_pred             cchhh
Q 039201          236 IPDTT  240 (258)
Q Consensus       236 ip~~l  240 (258)
                      +|..+
T Consensus       357 ~p~~l  361 (727)
T 4b8c_D          357 LPHER  361 (727)
T ss_dssp             CCCC-
T ss_pred             Ccccc
Confidence            87654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=5.4e-19  Score=160.03  Aligned_cols=165  Identities=21%  Similarity=0.278  Sum_probs=103.3

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++|.+.+.  +.+..+++|++|++++|.+.+..|  +..+++|++|+ ++|.+.+ +|+ +..+++|++|+++
T Consensus       222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~  295 (466)
T 1o6v_A          222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELN  295 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECC
T ss_pred             CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcC
Confidence            445555555554431  234555566666666666554322  55666666666 5555554 233 5666666666666


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|++++.. .+..+++|++    +++++|++++..|  +..+++|++|++++|.+++.        +.++++++|+.|  
T Consensus       296 ~n~l~~~~-~~~~l~~L~~----L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l  360 (466)
T 1o6v_A          296 ENQLEDIS-PISNLKNLTY----LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--------SSLANLTNINWLSA  360 (466)
T ss_dssp             SSCCSCCG-GGGGCTTCSE----EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEEC
T ss_pred             CCcccCch-hhcCCCCCCE----EECcCCcCCCchh--hccCccCCEeECCCCccCCc--------hhhccCCCCCEEeC
Confidence            66666433 3556666666    6777777765544  56677777777777777652        456777777777  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++|++++..|  +..+++|+.|++++|+++|
T Consensus       361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          361 GHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            7888887666  7778888888888887764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.80  E-value=1.2e-18  Score=157.61  Aligned_cols=162  Identities=24%  Similarity=0.216  Sum_probs=99.6

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|++++|.+++. |  ++.+++|++|++++|.+++ +|  ++++++|++|+ ++|.+++ +|  ++.+++|++|+++
T Consensus        65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred             CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence            677777777777653 3  6777777777777777765 33  66777777777 6666665 43  6666777777777


Q ss_pred             ccccccccccccCCCCcceecce------------------eecCCCccccccCccccCCCCCCeEecCCCcCCccCCCC
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSE------------------TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSD  211 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~------------------L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~  211 (258)
                      +|++++ +| ++++++|++|+++                  +++++|++++ +|  ++.+++|+.|++++|.+++.    
T Consensus       136 ~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----  206 (457)
T 3bz5_A          136 RNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----  206 (457)
T ss_dssp             TSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----
T ss_pred             CCccce-ec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----
Confidence            776664 22 3444444440000                  4455555543 33  44555555555555555441    


Q ss_pred             chhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          212 LDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       212 ~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                           .++++++|++|  ++|++++ +|  ++.+++|++|++++|+++|
T Consensus       207 -----~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          207 -----DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             -----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             -----ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence                 25556666666  7777775 66  6777778888888877764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=2.7e-19  Score=147.96  Aligned_cols=170  Identities=17%  Similarity=0.105  Sum_probs=142.3

Q ss_pred             CcEEEEEcCCCC-CcccCCccCCCCCCCCEEEccC-CCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCC--
Q 039201           70 PRVTKLDLRSKS-IGGFLSPFVGNPSFVRVIVLAN-NSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSIN--  144 (258)
Q Consensus        70 ~~v~~l~l~~~~-l~g~lp~~~~~l~~L~~L~Ls~-n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~--  144 (258)
                      ++++.|++++|. +++..+..+..+++|++|++++ |.+++..+..+.++++|++|+ ++|.+++ +|. +..+++|+  
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF  132 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence            489999999997 8765556889999999999998 999865557789999999999 7777876 887 88999998  


Q ss_pred             -EEEcccc-ccccccc-cccCCCCcc-eecceeecCCCccccccCccccCCCCCCeEecCCCc-CCccCCCCchhhhhhc
Q 039201          145 -YLILAEN-NFSGTLR-SIFNISSLE-FQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN-LGIGTTSDLDFITLLR  219 (258)
Q Consensus       145 -~L~L~~n-~l~g~~p-~~~~l~~L~-~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~~~~l~  219 (258)
                       +|++++| ++++..+ .+..+++|+ +    +++++|+++ .+|......++|++|++++|. +++.      .+..+.
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~----L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i------~~~~~~  201 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLT----LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI------DKDAFG  201 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEE----EECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEE------CTTTTT
T ss_pred             cEEECCCCcchhhcCcccccchhcceeE----EEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccC------CHHHhh
Confidence             9999999 9986555 688999999 9    999999998 777765555899999999995 8863      234577


Q ss_pred             CC-CCCccc--cccccccccchhhcCCCCCCeEeccCCc
Q 039201          220 NC-SKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       220 ~l-~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                      ++ ++|+.|  ++|+++ .+|..  .+++|+.|+++++.
T Consensus       202 ~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          202 GVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             ccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            77 888887  899998 67765  68899999998863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=7.9e-19  Score=152.57  Aligned_cols=166  Identities=20%  Similarity=0.341  Sum_probs=97.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++|.+.+. ++ +..+++|++|++++|.+.+. +. +..+++|++|+ ++|.+++ +|. +..+++|++|+++
T Consensus       178 ~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~  251 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIG  251 (347)
T ss_dssp             TCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred             CCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECC
Confidence            344444544444322 22 44455555555555555432 22 55566666666 5555543 333 6666777777777


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|.+++ ++.+..+++|++    +++++|++++.  +.+..+++|++|++++|.+++.      .+..++++++|++|  
T Consensus       252 ~n~l~~-~~~~~~l~~L~~----L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          252 TNQISD-INAVKDLTKLKM----LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE------DMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             SSCCCC-CGGGTTCTTCCE----EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG------GHHHHHTCTTCSEEEC
T ss_pred             CCccCC-ChhHhcCCCcCE----EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc------ChhHhhccccCCEEEc
Confidence            776653 355666667777    77777776643  3466677777777777777664      44566777777766  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ++|++++..|  +..+++|++|++++|+++
T Consensus       319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          319 SQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCccccccC--hhhhhccceeehhhhccc
Confidence            7777775444  666777777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=2.6e-20  Score=161.17  Aligned_cols=175  Identities=25%  Similarity=0.234  Sum_probs=125.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCC-CCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGE-IPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~-~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +++.++++++.+.+..++ +..+++|++|++++|.+.+. +|..+.++++|++|+ ++|.+++..|..++.+++|++|++
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            566777777777665444 56678888888888877755 677777788888888 666777777777777888888888


Q ss_pred             ccc-cccc-ccc-cccCCCCcceecceeecCCC-ccccc-cCccccCCC-CCCeEecCCC--cCCccCCCCchhhhhhcC
Q 039201          149 AEN-NFSG-TLR-SIFNISSLEFQSSETEKSKN-RFTGK-LGIDFNSLI-NLARLNLGQK--NLGIGTTSDLDFITLLRN  220 (258)
Q Consensus       149 ~~n-~l~g-~~p-~~~~l~~L~~l~l~L~l~~n-~~~g~-ip~~~~~l~-~L~~L~ls~N--~l~g~~p~~~~~~~~l~~  220 (258)
                      ++| .+++ .+| .+.++++|++    |++++| .+++. ++..+..++ +|++|++++|  .+++.     .++..+.+
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~----L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-----~l~~~~~~  220 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDE----LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-----DLSTLVRR  220 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCE----EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-----HHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCE----EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH-----HHHHHHhh
Confidence            888 5665 356 5677788888    777888 77654 566677777 8888888877  44421     14566667


Q ss_pred             CCCCccc--cccc-cccccchhhcCCCCCCeEeccCCc
Q 039201          221 CSKLKTL--QYNQ-LTGTIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       221 l~~L~~L--~~N~-l~g~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                      +++|++|  ++|. +++..+..+..+++|++|++++|.
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            7777777  6666 666777777777788888887773

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=2e-18  Score=156.22  Aligned_cols=166  Identities=17%  Similarity=0.186  Sum_probs=122.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|+++++.+++. | .++.+++|++|++++|.+++ +|  ++++++|++|+ ++|.+++ +|  ++++++|++|+++
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECC
Confidence            799999999999874 5 68999999999999999996 45  89999999999 8888887 44  8999999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCc---------------hh
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDL---------------DF  214 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~---------------~~  214 (258)
                      +|++++ +| ++++++|++    +++++|++++ ++  ++.+++|++|++++|...+.++...               .+
T Consensus       115 ~N~l~~-l~-~~~l~~L~~----L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          115 TNKLTK-LD-VSQNPLLTY----LNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             SSCCSC-CC-CTTCTTCCE----EECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCe-ec-CCCCCcCCE----EECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence            999986 55 788999999    8889998886 33  6666777777777765444321000               01


Q ss_pred             hhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          215 ITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       215 ~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      |  ++.+++|+.|  ++|++++.   .++.+++|++|++++|+++|
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence            1  3344444444  55555532   25556666666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=4.9e-19  Score=154.69  Aligned_cols=189  Identities=14%  Similarity=0.127  Sum_probs=143.7

Q ss_pred             CccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCc-ccCCCCCCcEEc--
Q 039201           57 LCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPN-EVGCLSRLETLI--  124 (258)
Q Consensus        57 ~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~-~l~~l~~L~~L~--  124 (258)
                      .|.|..|.|+...         ..+++|+|++|+++...+..+.++++|++|+|++|.+.+.+|. .+.++++++++.  
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            4788999997421         3689999999999854445799999999999999999877775 568899887654  


Q ss_pred             CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCC-CccccccCccccCCC-CCCeEecCC
Q 039201          125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSK-NRFTGKLGIDFNSLI-NLARLNLGQ  201 (258)
Q Consensus       125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~-n~~~g~ip~~~~~l~-~L~~L~ls~  201 (258)
                      ..|++....|..+.++++|++|++++|++++..+ .+....++..    +++.+ +++...-+..+..+. .+++|++++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~----l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL----LDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE----EEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh----hhhccccccccccccchhhcchhhhhhcccc
Confidence            6688887778889999999999999999986555 6666677777    77755 455533333455554 688999999


Q ss_pred             CcCCccCCCCchhhhhhcCCCCCccc---cccccccccch-hhcCCCCCCeEeccCCcCC
Q 039201          202 KNLGIGTTSDLDFITLLRNCSKLKTL---QYNQLTGTIPD-TTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       202 N~l~g~~p~~~~~~~~l~~l~~L~~L---~~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~  257 (258)
                      |.++.       ++.......+|+.+   .+|.++ .||. .|..+++|++||+++|+|+
T Consensus       164 N~i~~-------i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          164 NGIQE-------IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCCCE-------ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred             ccccC-------CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence            99986       34444445556666   356665 6775 5688999999999999886

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=9.3e-19  Score=163.39  Aligned_cols=165  Identities=19%  Similarity=0.256  Sum_probs=134.4

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.|+++++.+.. ++ .+..+++|++|+|++|.+.+ +|+ +.++++|++|+ ++|.+.+ +| .+..+++|++|+|+
T Consensus        44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            68888898888864 34 58889999999999999885 444 88899999998 7777764 44 68889999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|.+++ +|.+..+++|+.    |++++|++++.  ..++.+++|+.|+|++|.+++.       ++ +..+++|+.|  
T Consensus       118 ~N~l~~-l~~l~~l~~L~~----L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~-------~~-l~~l~~L~~L~L  182 (605)
T 1m9s_A          118 HNGISD-INGLVHLPQLES----LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-------VP-LAGLTKLQNLYL  182 (605)
T ss_dssp             TSCCCC-CGGGGGCTTCSE----EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC-------GG-GTTCTTCCEEEC
T ss_pred             CCCCCC-CccccCCCccCE----EECCCCccCCc--hhhcccCCCCEEECcCCcCCCc-------hh-hccCCCCCEEEC
Confidence            999885 567888899999    88999998864  5688899999999999999874       23 7788888887  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++|++++ + +.+..+++|+.|+|++|++++
T Consensus       183 s~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          183 SKNHISD-L-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred             cCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence            8888885 4 468889999999999988753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.78  E-value=2.4e-18  Score=149.46  Aligned_cols=150  Identities=23%  Similarity=0.299  Sum_probs=105.0

Q ss_pred             CCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCcce
Q 039201           90 VGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEF  168 (258)
Q Consensus        90 ~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~  168 (258)
                      +..+++|++|++++|.+.+ ++. +..+++|++|+ ++|.+.+. +. +..+++|++|++++|.+++.. .+..+++|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~  247 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLS-PLANLSQLTW  247 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred             hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCc-chhcCCCCCE
Confidence            3444445555555544442 222 44455555555 44444432 22 667777888888888777433 3667788888


Q ss_pred             ecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCC
Q 039201          169 QSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNL  246 (258)
Q Consensus       169 l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L  246 (258)
                          +++++|++++ + ..+..+++|++|++++|.+++.        +.+..+++|+.|  ++|++++..|..+..+++|
T Consensus       248 ----L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          248 ----LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             ----EECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             ----EECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--------hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence                8888888875 3 3577888888888888888762        457788888888  8999999899999999999


Q ss_pred             CeEeccCCcCCC
Q 039201          247 QAPDLSENNLNA  258 (258)
Q Consensus       247 ~~L~Ls~N~l~G  258 (258)
                      ++|++++|++++
T Consensus       314 ~~L~L~~n~l~~  325 (347)
T 4fmz_A          314 TTLFLSQNHITD  325 (347)
T ss_dssp             SEEECCSSSCCC
T ss_pred             CEEEccCCcccc
Confidence            999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.78  E-value=1.1e-18  Score=140.24  Aligned_cols=147  Identities=18%  Similarity=0.157  Sum_probs=126.6

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.++++++++. .+| .+..+++|++|++++|.++  .++.+.++++|++|+ ++|.+++..|..++.+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            7899999999998 566 6899999999999999665  455789999999999 8899998889999999999999999


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-  227 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-  227 (258)
                      +|++++..| .+..+++|++    +++++|++.+.+| .+..+++|++|++++|.+++.       + .+..+++|++| 
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~----L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-------~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNS----IDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-------R-GIEDFPKLNQLY  187 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCE----EECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-------T-TGGGCSSCCEEE
T ss_pred             CCccCcHhHHHHhhCCCCCE----EEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-------H-HhccCCCCCEEE
Confidence            999998788 8999999999    9999998555777 689999999999999999872       2 67888888888 


Q ss_pred             -ccccccc
Q 039201          228 -QYNQLTG  234 (258)
Q Consensus       228 -~~N~l~g  234 (258)
                       ++|++.+
T Consensus       188 l~~N~i~~  195 (197)
T 4ezg_A          188 AFSQTIGG  195 (197)
T ss_dssp             ECBC----
T ss_pred             eeCcccCC
Confidence             8888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=2.9e-18  Score=155.24  Aligned_cols=165  Identities=19%  Similarity=0.236  Sum_probs=115.6

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++|.+.+..|  ++.+++|++|++++|.+++ ++ .+..+++|++|+ ++|.+.+..|  +..+++|++|+++
T Consensus       200 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~  273 (466)
T 1o6v_A          200 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  273 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence            56666666666654433  5556666677777666653 32 466677777777 6666665433  6777788888888


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|.+++..| +..+++|++    +++++|++.+..|  ++.+++|++|++++|.+++.       ++ ++.+++|+.|  
T Consensus       274 ~n~l~~~~~-~~~l~~L~~----L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-------~~-~~~l~~L~~L~l  338 (466)
T 1o6v_A          274 ANQISNISP-LAGLTALTN----LELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-------SP-VSSLTKLQRLFF  338 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSE----EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC-------GG-GGGCTTCCEEEC
T ss_pred             CCccCcccc-ccCCCccCe----EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc-------hh-hccCccCCEeEC
Confidence            887775433 667777888    7888888875443  67788888888888888774       22 6677777777  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++|++++.  +.+..+++|+.|++++|+++|
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence            88888864  468888999999999998865

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=2e-20  Score=161.89  Aligned_cols=209  Identities=19%  Similarity=0.124  Sum_probs=167.5

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCC--CCCCEEEccCCCCc
Q 039201           30 KTDHLLAIKSQLQDPLGPTSSWKASLNLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNP--SFVRVIVLANNSYY  107 (258)
Q Consensus        30 ~~~aL~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l--~~L~~L~Ls~n~l~  107 (258)
                      ..|.+..+...+....  .  .....-|.+|.++.|+..  .++.++++++.+.   +..+..+  +.+++|++++|.+.
T Consensus        13 P~eil~~If~~L~~~d--~--~~~~~vc~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~   83 (336)
T 2ast_B           13 PDELLLGIFSCLCLPE--L--LKVSGVCKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMD   83 (336)
T ss_dssp             CHHHHHHHHTTSCHHH--H--HHTTSSCHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEEC
T ss_pred             CHHHHHHHHHhCCHHH--H--HHHHHHHHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCcccc
Confidence            3456777666552211  0  011223457999988632  5889999998876   4556666  89999999999999


Q ss_pred             CCCCcccCCCCCCcEEc-CCCccCCC-CCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCC-ccccc
Q 039201          108 GEIPNEVGCLSRLETLI-GGYRLGGK-IPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKN-RFTGK  183 (258)
Q Consensus       108 g~~p~~l~~l~~L~~L~-~~n~l~g~-ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n-~~~g~  183 (258)
                      +..+. +.++++|++|+ ++|.+.+. +|..+..+++|++|++++|.+++..| .++.+++|++    |++++| .+++.
T Consensus        84 ~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~----L~L~~~~~l~~~  158 (336)
T 2ast_B           84 QPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR----LNLSGCSGFSEF  158 (336)
T ss_dssp             SCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE----EECTTCBSCCHH
T ss_pred             ccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE----EECCCCCCCCHH
Confidence            77665 67899999999 77888866 88889999999999999999998888 8899999999    999999 67763


Q ss_pred             -cCccccCCCCCCeEecCCC-cCCccCCCCchhhhhhcCCC-CCccc--ccc--ccc-cccchhhcCCCCCCeEeccCCc
Q 039201          184 -LGIDFNSLINLARLNLGQK-NLGIGTTSDLDFITLLRNCS-KLKTL--QYN--QLT-GTIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       184 -ip~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~~~~l~~l~-~L~~L--~~N--~l~-g~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                       +|..+..+++|++|++++| .+++.     .++..+.+++ +|++|  ++|  .++ +.+|..+..+++|++|++++|.
T Consensus       159 ~l~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          159 ALQTLLSSCSRLDELNLSWCFDFTEK-----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTCCHH-----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             HHHHHHhcCCCCCEEcCCCCCCcChH-----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence             7777899999999999999 88863     1467788888 99988  777  566 5788888999999999999998


Q ss_pred             -CC
Q 039201          256 -LN  257 (258)
Q Consensus       256 -l~  257 (258)
                       ++
T Consensus       234 ~l~  236 (336)
T 2ast_B          234 MLK  236 (336)
T ss_dssp             TCC
T ss_pred             cCC
Confidence             54

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.77  E-value=5e-20  Score=158.80  Aligned_cols=167  Identities=19%  Similarity=0.184  Sum_probs=137.9

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCccc-CCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESL-GQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~-~~l~~L~~L~L  148 (258)
                      .++.+++++|.+++..+.   .+++|++|++++|.+++..|..++.+++|++|+ ++|.+.+..|..+ ..+++|++|++
T Consensus       100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            556666666666554333   367899999999999977777888999999999 8888888777776 47999999999


Q ss_pred             cccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc-
Q 039201          149 AENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL-  227 (258)
Q Consensus       149 ~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L-  227 (258)
                      ++|.+++. |....+++|++    +++++|++++ +|..+..+++|++|++++|.+++       +|..+..+++|+.| 
T Consensus       177 ~~N~l~~~-~~~~~l~~L~~----L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-------l~~~~~~l~~L~~L~  243 (317)
T 3o53_A          177 QYNFIYDV-KGQVVFAKLKT----LDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-------IEKALRFSQNLEHFD  243 (317)
T ss_dssp             TTSCCCEE-ECCCCCTTCCE----EECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-------ECTTCCCCTTCCEEE
T ss_pred             CCCcCccc-ccccccccCCE----EECCCCcCCc-chhhhcccCcccEEECcCCcccc-------hhhHhhcCCCCCEEE
Confidence            99999854 64446899999    9999999985 56669999999999999999986       45667888888888 


Q ss_pred             -cccccc-cccchhhcCCCCCCeEeccC
Q 039201          228 -QYNQLT-GTIPDTTGELRNLQAPDLSE  253 (258)
Q Consensus       228 -~~N~l~-g~ip~~l~~l~~L~~L~Ls~  253 (258)
                       ++|+++ +.+|..+..+++|+.++++.
T Consensus       244 l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccCCCccCcCHHHHHhccccceEEECCC
Confidence             899998 88899999999999988873

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.77  E-value=2.6e-18  Score=137.75  Aligned_cols=130  Identities=18%  Similarity=0.206  Sum_probs=114.3

Q ss_pred             EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCc-ccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201           73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPN-EVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE  150 (258)
Q Consensus        73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~-~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~  150 (258)
                      +.++++++++. .+|..+..  .+++|++++|.+++..+. .++++++|++|+ ++|.+++..|..+.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            35666777774 67776644  899999999999865554 488999999999 88999998899999999999999999


Q ss_pred             cccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCC
Q 039201          151 NNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTT  209 (258)
Q Consensus       151 n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p  209 (258)
                      |++++..| .+..+++|++    |++++|++++..|..+..+++|++|++++|.+++..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKT----LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCE----EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCE----EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99998888 7899999999    9999999999999999999999999999999998743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=6.3e-19  Score=160.72  Aligned_cols=162  Identities=18%  Similarity=0.090  Sum_probs=119.9

Q ss_pred             cCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccccccc--------
Q 039201           89 FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRS--------  159 (258)
Q Consensus        89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~--------  159 (258)
                      ....+++|++|+|++|.+++..|..++++++|++|+ ++|.+++..|  ++.+++|++|++++|.+++..+.        
T Consensus        29 l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L  106 (487)
T 3oja_A           29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHA  106 (487)
T ss_dssp             TSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred             hcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEEC
Confidence            344555899999999999987778899999999999 8888887665  89999999999999988753211        


Q ss_pred             ---------ccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch-hh--------------
Q 039201          160 ---------IFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD-FI--------------  215 (258)
Q Consensus       160 ---------~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~~--------------  215 (258)
                               ...+++|++    |++++|.+++..|..++.+++|++|++++|.+++.+|..+. ..              
T Consensus       107 ~~N~l~~~~~~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKN----IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEECCCSSCEE----EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCccccCCCCE----EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence                     112456777    99999999999999999999999999999999987543221 00              


Q ss_pred             --hhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          216 --TLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       216 --~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                        +....+++|++|  ++|++++ +|+.+..+++|+.|++++|+++
T Consensus       183 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          183 DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             EEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred             cccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc
Confidence              111223444444  6666664 4445666777777777777665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.77  E-value=1e-19  Score=164.54  Aligned_cols=165  Identities=19%  Similarity=0.182  Sum_probs=92.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCC-------------cEEc-CCCccCCCCCcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRL-------------ETLI-GGYRLGGKIPES  136 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L-------------~~L~-~~n~l~g~ip~~  136 (258)
                      +++.++++++++ |.+|+.++++++|++|++++|.+.|.+|..++++++|             ++|+ ++|.+++ +|..
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~   89 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL   89 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence            688888888888 7888888888888888888888888888888776654             5555 4444443 3321


Q ss_pred             c-----------------CCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEec
Q 039201          137 L-----------------GQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNL  199 (258)
Q Consensus       137 ~-----------------~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~l  199 (258)
                      .                 ..+++|++|++++|++++ +|.+  .++|++    +++++|++++ +| .++++++|++|++
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~--~~~L~~----L~L~~n~l~~-lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL--PPLLEY----LGVSNNQLEK-LP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC--CTTCCE----EECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC--CCCCCE----EECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence            0                 012345555555554442 2211  146777    8888888885 77 5888888999999


Q ss_pred             CCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          200 GQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       200 s~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++|.+++ +|.      .+.   +|++|  ++|++++ +| .++.+++|++|++++|+++|
T Consensus       161 ~~N~l~~-lp~------~~~---~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          161 DNNSLKK-LPD------LPP---SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CSSCCSC-CCC------CCT---TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCcCcc-cCC------Ccc---cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            8888886 442      222   44444  7777775 56 57777777777777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=2.4e-20  Score=164.89  Aligned_cols=183  Identities=22%  Similarity=0.323  Sum_probs=140.9

Q ss_pred             CcEEEEEcCCCCCcc----cCCccCCCCCCCCEEEccCCCCcCCCCccc----CCC---------CCCcEEc-CCCccC-
Q 039201           70 PRVTKLDLRSKSIGG----FLSPFVGNPSFVRVIVLANNSYYGEIPNEV----GCL---------SRLETLI-GGYRLG-  130 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g----~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l----~~l---------~~L~~L~-~~n~l~-  130 (258)
                      ++++.|++++|.+.+    .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|+ ++|.++ 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            378888888888876    467777888888888888888864333333    333         7888888 777776 


Q ss_pred             CCCC---cccCCCCCCCEEEccccccc--c---ccc-cccCCCCcceecceeecCCCccc----cccCccccCCCCCCeE
Q 039201          131 GKIP---ESLGQLGSINYLILAENNFS--G---TLR-SIFNISSLEFQSSETEKSKNRFT----GKLGIDFNSLINLARL  197 (258)
Q Consensus       131 g~ip---~~~~~l~~L~~L~L~~n~l~--g---~~p-~~~~l~~L~~l~l~L~l~~n~~~----g~ip~~~~~l~~L~~L  197 (258)
                      +.+|   ..+..+++|++|++++|+++  |   .+| .+..+++|++    |++++|.++    +.+|..+..+++|++|
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~----L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV----LDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE----EECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE----EECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            4455   45677889999999999887  3   456 7788899999    899999986    6788888999999999


Q ss_pred             ecCCCcCCccCCCCchhhhhhc--CCCCCccc--ccccccc----ccchhh-cCCCCCCeEeccCCcCCC
Q 039201          198 NLGQKNLGIGTTSDLDFITLLR--NCSKLKTL--QYNQLTG----TIPDTT-GELRNLQAPDLSENNLNA  258 (258)
Q Consensus       198 ~ls~N~l~g~~p~~~~~~~~l~--~l~~L~~L--~~N~l~g----~ip~~l-~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++++|.+++...  ..++..+.  ++++|++|  ++|++++    .+|..+ .++++|++|++++|++++
T Consensus       250 ~L~~n~i~~~~~--~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          250 GLNDCLLSARGA--AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             ECTTCCCCHHHH--HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ECCCCCCchhhH--HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            999999876411  01345563  38888888  8999997    588888 668999999999999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.77  E-value=4.2e-19  Score=149.32  Aligned_cols=141  Identities=17%  Similarity=0.197  Sum_probs=71.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++|++.. ++ .+..+++|++|++++|.+++ +|+ +.++++|++|+ ++|.+.+ +|... . ++|++|+++
T Consensus        42 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred             cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence            45555555555542 33 35555555555555555553 333 55555555555 4444443 33322 2 555555555


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|++++ +|.+..+++|++    |++++|++++ +| .++.+++|++|++++|.+++.        ..+..+++|+.|  
T Consensus       115 ~N~l~~-~~~l~~l~~L~~----L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--------~~l~~l~~L~~L~l  179 (263)
T 1xeu_A          115 NNELRD-TDSLIHLKNLEI----LSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--------GGLTRLKKVNWIDL  179 (263)
T ss_dssp             SSCCSB-SGGGTTCTTCCE----EECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--------TTSTTCCCCCEEEE
T ss_pred             CCccCC-ChhhcCcccccE----EECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--------HHhccCCCCCEEeC
Confidence            555553 344555555555    5555555553 22 355555555555555555542        334444445444  


Q ss_pred             cccccc
Q 039201          228 QYNQLT  233 (258)
Q Consensus       228 ~~N~l~  233 (258)
                      ++|+++
T Consensus       180 ~~N~~~  185 (263)
T 1xeu_A          180 TGQKCV  185 (263)
T ss_dssp             EEEEEE
T ss_pred             CCCccc
Confidence            455554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=5.1e-20  Score=162.72  Aligned_cols=181  Identities=16%  Similarity=0.167  Sum_probs=93.3

Q ss_pred             cEEEEEcCCC---CCcccCCccC-------CCCCCCCEEEccCCCCcC----CCCcccCCCCCCcEEc-CCCccCCCCCc
Q 039201           71 RVTKLDLRSK---SIGGFLSPFV-------GNPSFVRVIVLANNSYYG----EIPNEVGCLSRLETLI-GGYRLGGKIPE  135 (258)
Q Consensus        71 ~v~~l~l~~~---~l~g~lp~~~-------~~l~~L~~L~Ls~n~l~g----~~p~~l~~l~~L~~L~-~~n~l~g~ip~  135 (258)
                      +++.|+++++   .+.+.+|+.+       ..+++|++|+|++|.+.+    .+|..+.++++|++|+ ++|.+++..+.
T Consensus        61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  140 (386)
T 2ca6_A           61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA  140 (386)
T ss_dssp             TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence            4555555553   2333444322       455555555555555554    2444455555555555 44444322222


Q ss_pred             c----cCCC---------CCCCEEEccccccc-cccc----cccCCCCcceecceeecCCCccc--c---ccCccccCCC
Q 039201          136 S----LGQL---------GSINYLILAENNFS-GTLR----SIFNISSLEFQSSETEKSKNRFT--G---KLGIDFNSLI  192 (258)
Q Consensus       136 ~----~~~l---------~~L~~L~L~~n~l~-g~~p----~~~~l~~L~~l~l~L~l~~n~~~--g---~ip~~~~~l~  192 (258)
                      .    +..+         ++|++|++++|+++ +.+|    .+..+++|++    |++++|+++  |   .+|..+..++
T Consensus       141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~----L~L~~n~l~~~g~~~l~~~~l~~~~  216 (386)
T 2ca6_A          141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT----VKMVQNGIRPEGIEHLLLEGLAYCQ  216 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE----EECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred             HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE----EECcCCCCCHhHHHHHHHHHhhcCC
Confidence            2    2222         55666666665554 2333    2334555666    666666655  2   2333555666


Q ss_pred             CCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccc----cchhh--cCCCCCCeEeccCCcCC
Q 039201          193 NLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGT----IPDTT--GELRNLQAPDLSENNLN  257 (258)
Q Consensus       193 ~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~----ip~~l--~~l~~L~~L~Ls~N~l~  257 (258)
                      +|++|++++|.++...  ...+|..+..+++|++|  ++|++++.    +|..+  +.+++|++|+|++|+++
T Consensus       217 ~L~~L~Ls~n~l~~~g--~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLG--SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             TCCEEECCSSCCHHHH--HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             CccEEECcCCCCCcHH--HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            6666666666664100  00145556666666666  66666654    45555  33667777777777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=4.7e-18  Score=149.10  Aligned_cols=167  Identities=19%  Similarity=0.214  Sum_probs=135.7

Q ss_pred             CCccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCC-CCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-
Q 039201           56 NLCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVG-NPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-  124 (258)
Q Consensus        56 ~~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~-~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-  124 (258)
                      ..|.+..+.|....         ..++.|+|++|.+++..+..+. .+++|++|+|++|.+++..|..+.++++|++|+ 
T Consensus        16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            44778888887421         2588999999999987777777 999999999999999976677899999999999 


Q ss_pred             CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccc----cCCCCCCeEec
Q 039201          125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDF----NSLINLARLNL  199 (258)
Q Consensus       125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~----~~l~~L~~L~l  199 (258)
                      ++|.+.+..+..+.++++|++|+|++|++++..| .+..+++|++    |++++|++++ +|..+    ..+++|+.|++
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~----L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK----LYLSQNQISR-FPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE----EECCSSCCCS-CCGGGTC----CTTCCEEEC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE----EECCCCcCCe-eCHHHhcCcccCCcCCEEEC
Confidence            8888887667789999999999999999998778 8999999999    9999999985 56554    67999999999


Q ss_pred             CCCcCCccCCCCchhhhhhcCCCCC--ccc--cccccc
Q 039201          200 GQKNLGIGTTSDLDFITLLRNCSKL--KTL--QYNQLT  233 (258)
Q Consensus       200 s~N~l~g~~p~~~~~~~~l~~l~~L--~~L--~~N~l~  233 (258)
                      ++|.+++. |     +..+..++.+  +.|  ++|.+.
T Consensus       171 ~~N~l~~l-~-----~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          171 SSNKLKKL-P-----LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CSSCCCCC-C-----HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCCcc-C-----HHHhhhccHhhcceEEecCCCcc
Confidence            99999973 2     3455555542  333  666664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.75  E-value=1.8e-17  Score=149.80  Aligned_cols=116  Identities=20%  Similarity=0.279  Sum_probs=72.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++|.+++ +|+.   +++|++|++++|.+++ +|..   .++|++|+ ++|.+++ +| +++++++|++|+++
T Consensus        92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD  161 (454)
T ss_dssp             TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence            67777777777765 5542   3566666666666653 3321   14666666 5566664 66 46677777777777


Q ss_pred             ccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCc
Q 039201          150 ENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       150 ~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g  206 (258)
                      +|++++ +| .+   ++|++    +++++|++++ +| .++.+++|++|++++|.+++
T Consensus       162 ~N~l~~-lp~~~---~~L~~----L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          162 NNSLKK-LPDLP---PSLEF----IAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             SSCCSC-CCCCC---TTCCE----EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCcCcc-cCCCc---ccccE----EECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence            777664 55 22   36666    6666666664 55 46666667777776666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.7e-17  Score=140.21  Aligned_cols=162  Identities=25%  Similarity=0.370  Sum_probs=134.4

Q ss_pred             EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201           74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN  152 (258)
Q Consensus        74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~  152 (258)
                      .+.+....+.+..+  +..+++|++|++++|.+. .+|. +..+++|++|+ ++|.+++ +++ +.++++|++|++++|.
T Consensus        28 ~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCcccccc--hhhcCcccEEEccCCCcc-cChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc
Confidence            33455555554332  457889999999999997 4554 88999999999 7788876 444 9999999999999999


Q ss_pred             cccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccc
Q 039201          153 FSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYN  230 (258)
Q Consensus       153 l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N  230 (258)
                      +++ +|.+..+++|++    |++++|++++ + +.+..+++|++|++++|.+++.        +.++++++|+.|  ++|
T Consensus       102 l~~-~~~l~~l~~L~~----L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          102 VKD-LSSLKDLKKLKS----LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CCC-GGGGTTCTTCCE----EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSS
T ss_pred             CCC-ChhhccCCCCCE----EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCC
Confidence            985 567889999999    9999999986 3 4689999999999999999873        568888888888  999


Q ss_pred             ccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          231 QLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       231 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++++..|  +..+++|+.|++++|++++
T Consensus       167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          167 QISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ccccchh--hcCCCccCEEECCCCcCCC
Confidence            9996544  8999999999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=3.5e-17  Score=131.11  Aligned_cols=128  Identities=18%  Similarity=0.207  Sum_probs=96.4

Q ss_pred             CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCc-ccCCCCCCCEEEccccccccccc-cccCCCCcceeccee
Q 039201           97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPE-SLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSET  173 (258)
Q Consensus        97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~-~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L  173 (258)
                      +++++++|+++ .+|..+..  ++++|+ ++|.+.+..|. .++.+++|++|++++|++++..| .+.++++|++    |
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~----L   83 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE----L   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE----E
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE----E
Confidence            78999999985 78876644  788888 66777654443 37788888888888888887777 7888888888    8


Q ss_pred             ecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccc
Q 039201          174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIP  237 (258)
Q Consensus       174 ~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip  237 (258)
                      ++++|++++..|..+..+++|++|++++|.+++..      |..+..+++|++|  ++|.+++..+
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM------PGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC------TTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC------HHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88888888777777888888888888888887753      3455566666665  6777766554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=6.3e-21  Score=176.87  Aligned_cols=103  Identities=20%  Similarity=0.177  Sum_probs=86.2

Q ss_pred             CCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCC
Q 039201          142 SINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNC  221 (258)
Q Consensus       142 ~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l  221 (258)
                      .|++|++++|.+++ +|.++.+++|++    |++++|+++ .+|..++.+++|++|++++|.+++       +| .++++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~~~~l~~L~~----L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-------lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCHLEQLLLVTH----LDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-------VD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSS-CCCGGGGTTCCE----EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-------CG-GGTTC
T ss_pred             CceEEEecCCCCCC-CcCccccccCcE----eecCccccc-ccchhhhcCCCCCEEECCCCCCCC-------Cc-ccCCC
Confidence            57888888888885 677888888888    888888888 888888888899999999998887       34 67888


Q ss_pred             CCCccc--ccccccccc-chhhcCCCCCCeEeccCCcCCC
Q 039201          222 SKLKTL--QYNQLTGTI-PDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       222 ~~L~~L--~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++|+.|  ++|++++.+ |..++.+++|+.|+|++|+++|
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            888887  888888776 8888888899999999888864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=7.1e-19  Score=154.30  Aligned_cols=182  Identities=21%  Similarity=0.190  Sum_probs=141.5

Q ss_pred             cEEEEEcCCCCCcccCC----ccCCCCC-CCCEEEccCCCCcCCCCcccCCC-----CCCcEEc-CCCccCCCCCcccC-
Q 039201           71 RVTKLDLRSKSIGGFLS----PFVGNPS-FVRVIVLANNSYYGEIPNEVGCL-----SRLETLI-GGYRLGGKIPESLG-  138 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp----~~~~~l~-~L~~L~Ls~n~l~g~~p~~l~~l-----~~L~~L~-~~n~l~g~ip~~~~-  138 (258)
                      +++.|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|+ ++|.+++..+..++ 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            59999999999987665    6777888 89999999999998777777664     9999999 88888877776544 


Q ss_pred             ---CC-CCCCEEEccccccccccc-ccc----C-CCCcceecceeecCCCcccc----ccCccccCCC-CCCeEecCCCc
Q 039201          139 ---QL-GSINYLILAENNFSGTLR-SIF----N-ISSLEFQSSETEKSKNRFTG----KLGIDFNSLI-NLARLNLGQKN  203 (258)
Q Consensus       139 ---~l-~~L~~L~L~~n~l~g~~p-~~~----~-l~~L~~l~l~L~l~~n~~~g----~ip~~~~~l~-~L~~L~ls~N~  203 (258)
                         .+ ++|++|++++|++++..+ .+.    . .++|++    |++++|++++    .++..+..++ +|++|++++|.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~----L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS----LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE----EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE----EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence               44 899999999999986555 433    3 368999    9999999985    3444556665 99999999999


Q ss_pred             CCccCCCCchhhhhhcCC-CCCccc--cccccccc----cchhhcCC-CCCCeEeccCCcCCC
Q 039201          204 LGIGTTSDLDFITLLRNC-SKLKTL--QYNQLTGT----IPDTTGEL-RNLQAPDLSENNLNA  258 (258)
Q Consensus       204 l~g~~p~~~~~~~~l~~l-~~L~~L--~~N~l~g~----ip~~l~~l-~~L~~L~Ls~N~l~G  258 (258)
                      +++..+..  +...+..+ ++|++|  ++|++++.    ++..+... ++|++|+|++|++++
T Consensus       179 l~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          179 LASKNCAE--LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             GGGSCHHH--HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             CchhhHHH--HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            98753211  22345555 588887  89999863    66667664 599999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=6.8e-19  Score=154.40  Aligned_cols=181  Identities=20%  Similarity=0.191  Sum_probs=138.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCC-----CCCCEEEccCCCCcCCCCcccC----CC-CCCcEEc-CCCccCCCCCccc--
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNP-----SFVRVIVLANNSYYGEIPNEVG----CL-SRLETLI-GGYRLGGKIPESL--  137 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l-----~~L~~L~Ls~n~l~g~~p~~l~----~l-~~L~~L~-~~n~l~g~ip~~~--  137 (258)
                      +++.|++++|.+++..+..+..+     ++|++|++++|.+++..+..+.    .+ ++|++|+ ++|.+++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            79999999999988767666664     9999999999999877666444    44 8999999 8888877665544  


Q ss_pred             --CC-CCCCCEEEccccccccc----cc-cccCCC-CcceecceeecCCCccccccCcccc----CC-CCCCeEecCCCc
Q 039201          138 --GQ-LGSINYLILAENNFSGT----LR-SIFNIS-SLEFQSSETEKSKNRFTGKLGIDFN----SL-INLARLNLGQKN  203 (258)
Q Consensus       138 --~~-l~~L~~L~L~~n~l~g~----~p-~~~~l~-~L~~l~l~L~l~~n~~~g~ip~~~~----~l-~~L~~L~ls~N~  203 (258)
                        .. .++|++|++++|.+++.    ++ .+..++ +|++    |++++|++++..+..++    .. ++|++|++++|.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~----L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS----LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE----EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE----eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence              34 36999999999999853    33 445565 8999    99999999877765544    44 699999999999


Q ss_pred             CCccCCCCchhhhhhcC-CCCCccc--cccccccccc----hhhcCCCCCCeEeccCCcCC
Q 039201          204 LGIGTTSDLDFITLLRN-CSKLKTL--QYNQLTGTIP----DTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       204 l~g~~p~~~~~~~~l~~-l~~L~~L--~~N~l~g~ip----~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +++...  ..++..+.. .++|++|  ++|++++..+    ..+..+++|++|++++|+++
T Consensus       208 i~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          208 LGLKSY--AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             GGGSCH--HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             CChhHH--HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            987421  114555655 3478877  8999987544    33567799999999999843

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=1e-18  Score=166.54  Aligned_cols=178  Identities=22%  Similarity=0.226  Sum_probs=122.8

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ..++.|+|++|.+. .+|+.+..+++|++|+|++|.++ .+|..++++++|++|+ ++|.++ .+|..+++|++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            47999999999997 78888889999999999999999 8999999999999999 888888 89999999999999999


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCC-CCeEecCCCcCCccCCCCchhhhhhcCCCCCcc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLIN-LARLNLGQKNLGIGTTSDLDFITLLRNCSKLKT  226 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~-L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~  226 (258)
                      ++|.++ .+| .++++++|++    |++++|.+++.+|..+..+.. +..+++++|.++|.+|..+.....-.+....  
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~----L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n~~~~--  373 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQF----LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTDGEPQ--  373 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCC----EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             CCCCCC-ccChhhhcCCCccE----EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecccccc--
Confidence            999997 889 9999999999    999999999999988866532 3457899999999876544332211110000  


Q ss_pred             ccccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          227 LQYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       227 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ...+.+.+.++..+..+.+++...+++|-+.
T Consensus       374 ~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          374 REYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ----------------------------CCC
T ss_pred             cccCCccccccchhhcccccceeeeeccccc
Confidence            0223455555556667777777888888764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=1.7e-17  Score=155.25  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=100.5

Q ss_pred             CCCCCCCCCCccccceee------CCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCc
Q 039201           48 TSSWKASLNLCQWTGVTC------SHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLE  121 (258)
Q Consensus        48 ~~~w~~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~  121 (258)
                      ...|....++|.|+|..|      ......++.+++++++++ .+|..+.  ++|++|++++|.++ .+|.   .+++|+
T Consensus        12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~   84 (622)
T 3g06_A           12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR   84 (622)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred             HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence            345766678899966422      111125889999999987 6777665  78999999999988 5776   578899


Q ss_pred             EEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecC
Q 039201          122 TLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLG  200 (258)
Q Consensus       122 ~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls  200 (258)
                      +|+ ++|.++ .+|.   .+++|++|++++|++++ +|.  .+++|+.    |++++|++++ +|..   +++|++|+++
T Consensus        85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~--~l~~L~~----L~L~~N~l~~-lp~~---l~~L~~L~Ls  149 (622)
T 3g06_A           85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA--LPSGLCK----LWIFGNQLTS-LPVL---PPGLQELSVS  149 (622)
T ss_dssp             EEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC--CCTTCCE----EECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred             EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC--CCCCcCE----EECCCCCCCc-CCCC---CCCCCEEECc
Confidence            998 777776 5776   67889999999988874 453  4567777    7778887774 6653   3677888888


Q ss_pred             CCcCCc
Q 039201          201 QKNLGI  206 (258)
Q Consensus       201 ~N~l~g  206 (258)
                      +|.+++
T Consensus       150 ~N~l~~  155 (622)
T 3g06_A          150 DNQLAS  155 (622)
T ss_dssp             SSCCSC
T ss_pred             CCcCCC
Confidence            887775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=1.1e-17  Score=128.27  Aligned_cols=124  Identities=16%  Similarity=0.110  Sum_probs=67.3

Q ss_pred             cEEEEEcCCCCCc-ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIG-GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~-g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +++.+++++|++. +.+|+.+..+++|++|++++|.+++.  ..++++++|++|+ ++|.+++.+|..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            5666666666665 55666666666666666666666543  3455555555555 455555445554445555555555


Q ss_pred             cccccccc-cc-cccCCCCcceecceeecCCCccccccC---ccccCCCCCCeEecC
Q 039201          149 AENNFSGT-LR-SIFNISSLEFQSSETEKSKNRFTGKLG---IDFNSLINLARLNLG  200 (258)
Q Consensus       149 ~~n~l~g~-~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip---~~~~~l~~L~~L~ls  200 (258)
                      ++|.+++. .| .+..+++|++    +++++|++++..+   ..++.+++|++|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~----L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKS----LDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCE----EECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCE----EeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            55555542 22 4455555555    5555555553333   244555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.70  E-value=2.1e-16  Score=124.62  Aligned_cols=134  Identities=17%  Similarity=0.186  Sum_probs=107.5

Q ss_pred             CCccccceeeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCC
Q 039201           56 NLCQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP  134 (258)
Q Consensus        56 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip  134 (258)
                      ..|.|.++.|.            ++++. .+|..+  .++|++|++++|.+++..+..+.++++|++|+ ++|.+++..+
T Consensus         5 C~C~~~~l~~~------------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (177)
T 2o6r_A            5 CSCSGTEIRCN------------SKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD   69 (177)
T ss_dssp             CEEETTEEECC------------SSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CEeCCCEEEec------------CCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence            34677777765            34444 345433  36899999999999865556678999999999 7788886555


Q ss_pred             cccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccC
Q 039201          135 ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGT  208 (258)
Q Consensus       135 ~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~  208 (258)
                      ..+.++++|++|++++|++++..+ .+.++++|++    +++++|++++..+..+..+++|++|++++|.+++..
T Consensus        70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~----L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE----LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             hHccCCCccCEEECCCCCccccCHHHhhCCcccCE----EECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            667999999999999999997666 6789999999    999999999655555688999999999999999863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=2.3e-17  Score=129.06  Aligned_cols=130  Identities=16%  Similarity=0.115  Sum_probs=83.4

Q ss_pred             cEEEEEcCCCCCc-ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIG-GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~-g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +++.|++++|++. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|+ ++|.+.+.+|..+.++++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            5777777777776 66676667777777777777777643  4566666666666 666666656665556666666666


Q ss_pred             ccccccccc--ccccCCCCcceecceeecCCCccccccC---ccccCCCCCCeEecCCCcCCc
Q 039201          149 AENNFSGTL--RSIFNISSLEFQSSETEKSKNRFTGKLG---IDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       149 ~~n~l~g~~--p~~~~l~~L~~l~l~L~l~~n~~~g~ip---~~~~~l~~L~~L~ls~N~l~g  206 (258)
                      ++|.+++..  +.+..+++|++    +++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~----L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKS----LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCE----EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             cCCccCcchhHHHHhcCCCCCE----EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            666666522  25566666666    6666666664333   256666666666666666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=5.7e-17  Score=151.34  Aligned_cols=164  Identities=24%  Similarity=0.348  Sum_probs=137.4

Q ss_pred             EEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccc
Q 039201           72 VTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAE  150 (258)
Q Consensus        72 v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~  150 (258)
                      +..+.+..+.+.+.++  +..+.+|++|++++|.+. .+| .+..+++|++|+ ++|.+.+. |+ +..+++|++|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcC
Confidence            3444555666654433  467889999999999997 455 589999999999 77888764 44 89999999999999


Q ss_pred             cccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--c
Q 039201          151 NNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--Q  228 (258)
Q Consensus       151 n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~  228 (258)
                      |.+++ +|.+..+++|++    |++++|++.+ + +.+..+++|+.|++++|.+++.        +.+..+++|+.|  +
T Consensus        97 N~l~~-l~~l~~l~~L~~----L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           97 NKIKD-LSSLKDLKKLKS----LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             SCCCC-CTTSTTCTTCCE----EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--------GGGGSCTTCSEEECC
T ss_pred             CCCCC-ChhhccCCCCCE----EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--------hhhcccCCCCEEECc
Confidence            99984 568889999999    9999999985 4 4589999999999999999873        578888999988  9


Q ss_pred             ccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          229 YNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       229 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      +|++++..|  +..+++|+.|+|++|++++
T Consensus       162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          162 DNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            999997666  8999999999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=5.7e-17  Score=126.74  Aligned_cols=134  Identities=22%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             CCCCCCCEEEccCCCCc-CCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcc
Q 039201           91 GNPSFVRVIVLANNSYY-GEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLE  167 (258)
Q Consensus        91 ~~l~~L~~L~Ls~n~l~-g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~  167 (258)
                      ...++|++|++++|.++ |.+|..+.++++|++|+ ++|.+.+.  ..+..+++|++|++++|++++.+| .+.++++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            44578999999999987 78888778888888888 66776654  667788888888888888887677 566678888


Q ss_pred             eecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccc
Q 039201          168 FQSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT  233 (258)
Q Consensus       168 ~l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~  233 (258)
                      +    |++++|++++. .+..+..+++|++|++++|.+++..+.   ....+..+++|++|  ++|.+.
T Consensus        99 ~----L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           99 H----LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY---RESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             E----EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH---HHHHHTTCSSCCEETTEETTSC
T ss_pred             E----EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH---HHHHHHhCccCcEecCCCCChh
Confidence            8    78888887753 225677788888888888877763100   00245555555555  445444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.69  E-value=2.3e-16  Score=147.57  Aligned_cols=163  Identities=23%  Similarity=0.241  Sum_probs=93.6

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccC-----------------CCCCCcEEc-CCCccCC
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-----------------CLSRLETLI-GGYRLGG  131 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~-----------------~l~~L~~L~-~~n~l~g  131 (258)
                      ++++.|++++|.+++ +|.   .+++|++|++++|.+++ +|..+.                 .+++|++|+ ++|.+++
T Consensus        81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A           81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS  155 (622)
T ss_dssp             TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC
Confidence            367778888877763 554   55666666666666653 333110                 114444444 4444432


Q ss_pred             CCCc---ccCCC--------------CCCCEEEccccccccccc-cccC-----------------CCCcceecceeecC
Q 039201          132 KIPE---SLGQL--------------GSINYLILAENNFSGTLR-SIFN-----------------ISSLEFQSSETEKS  176 (258)
Q Consensus       132 ~ip~---~~~~l--------------~~L~~L~L~~n~l~g~~p-~~~~-----------------l~~L~~l~l~L~l~  176 (258)
                       +|.   .+..+              ++|++|++++|++++ +| .+.+                 +++|++    |+++
T Consensus       156 -l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~----L~Ls  229 (622)
T 3g06_A          156 -LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKE----LIVS  229 (622)
T ss_dssp             -CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCE----EECC
T ss_pred             -cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCE----EEcc
Confidence             222   11111              555555555555553 22 1111                 133444    5555


Q ss_pred             CCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCC
Q 039201          177 KNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSEN  254 (258)
Q Consensus       177 ~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N  254 (258)
                      +|++++ +|   ..+++|++|++++|.++. +      |.   .+++|+.|  ++|+++ .+|..+.++++|+.|+|++|
T Consensus       230 ~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-l------p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          230 GNRLTS-LP---VLPSELKELMVSGNRLTS-L------PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             SSCCSC-CC---CCCTTCCEEECCSSCCSC-C------CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CCccCc-CC---CCCCcCcEEECCCCCCCc-C------Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            555553 44   334556666666666653 2      22   34456666  899999 89999999999999999999


Q ss_pred             cCCC
Q 039201          255 NLNA  258 (258)
Q Consensus       255 ~l~G  258 (258)
                      +++|
T Consensus       295 ~l~~  298 (622)
T 3g06_A          295 PLSE  298 (622)
T ss_dssp             CCCH
T ss_pred             CCCC
Confidence            9875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=8.4e-17  Score=123.29  Aligned_cols=109  Identities=25%  Similarity=0.226  Sum_probs=72.1

Q ss_pred             CCCCCCEEEccCCCCc-CCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcce
Q 039201           92 NPSFVRVIVLANNSYY-GEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEF  168 (258)
Q Consensus        92 ~l~~L~~L~Ls~n~l~-g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~  168 (258)
                      ..++|++|++++|.++ +.+|..+..+++|++|+ ++|.+++.  ..++++++|++|++++|.+++.+| .+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            4467888888888887 67777667777777776 55555543  556666667777777776666566 5555666666


Q ss_pred             ecceeecCCCccccc-cCccccCCCCCCeEecCCCcCCc
Q 039201          169 QSSETEKSKNRFTGK-LGIDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       169 l~l~L~l~~n~~~g~-ip~~~~~l~~L~~L~ls~N~l~g  206 (258)
                          +++++|++++. .|..++.+++|++|++++|.+++
T Consensus        93 ----L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           93 ----LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ----EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ----EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence                66666666642 33556666666666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=1.4e-16  Score=147.50  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=113.6

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      ++++.|++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|++|+ ++|.+++ +|.   .+++|++|++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  167 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV  167 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence            367777777777766 665 544  77778888877775 666   577888888 7777775 776   5789999999


Q ss_pred             cccccccccccccCCCCcceecceeecCCCccccccCccccCCCCC-------CeEecCCCcCCccCCCCchhhhhhcCC
Q 039201          149 AENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINL-------ARLNLGQKNLGIGTTSDLDFITLLRNC  221 (258)
Q Consensus       149 ~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L-------~~L~ls~N~l~g~~p~~~~~~~~l~~l  221 (258)
                      ++|++++ +|.+.  ++|++    |++++|+++ .+|. +..  +|       +.|++++|.++.       +|..+.++
T Consensus       168 s~N~L~~-lp~l~--~~L~~----L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-------lp~~l~~l  229 (571)
T 3cvr_A          168 RNNQLTF-LPELP--ESLEA----LDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-------IPENILSL  229 (571)
T ss_dssp             CSSCCSC-CCCCC--TTCCE----EECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-------CCGGGGGS
T ss_pred             CCCCCCC-cchhh--CCCCE----EECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-------cCHHHhcC
Confidence            9999986 77644  89999    999999998 7887 654  77       999999999985       56778888


Q ss_pred             CCCccc--cccccccccchhhcCCC
Q 039201          222 SKLKTL--QYNQLTGTIPDTTGELR  244 (258)
Q Consensus       222 ~~L~~L--~~N~l~g~ip~~l~~l~  244 (258)
                      ++|+.|  ++|+++|.+|..+..+.
T Consensus       230 ~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            888888  99999999999887653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=7.3e-16  Score=123.59  Aligned_cols=126  Identities=19%  Similarity=0.206  Sum_probs=109.4

Q ss_pred             EEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201           74 KLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN  152 (258)
Q Consensus        74 ~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~  152 (258)
                      .++++++++. .+|..+.  +.|++|++++|.++ .+|..+.++++|++|+ ++|.+++..|..+.++++|++|+|++|+
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            4666677776 5676543  68999999999998 7899999999999999 8889988777889999999999999999


Q ss_pred             cccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          153 FSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       153 l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      +++..| .+..+++|++    |++++|++++..+..+..+++|+.|++++|.+...
T Consensus        90 l~~i~~~~f~~l~~L~~----L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRL----LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCBCCTTTTTTCTTCCE----EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             cCEeCHHHhCCCCCCCE----EECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            998777 8999999999    99999999965555688999999999999998754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.67  E-value=1.9e-18  Score=155.58  Aligned_cols=177  Identities=22%  Similarity=0.154  Sum_probs=113.2

Q ss_pred             cEEEEEcCCCCCccc----CCccCCCCCCCCEEEccCCCCcCCC-----CcccCCCCCCcEEc-CCCccCCC----CCcc
Q 039201           71 RVTKLDLRSKSIGGF----LSPFVGNPSFVRVIVLANNSYYGEI-----PNEVGCLSRLETLI-GGYRLGGK----IPES  136 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~----lp~~~~~l~~L~~L~Ls~n~l~g~~-----p~~l~~l~~L~~L~-~~n~l~g~----ip~~  136 (258)
                      +++.|++++|.+++.    ++..+..+++|++|++++|.+.+.-     +.....+++|++|+ ++|.+++.    +|..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            455555555555442    3444555566666666666554321     11122456666666 55555543    4555


Q ss_pred             cCCCCCCCEEEccccccccccc-ccc-----CCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCc
Q 039201          137 LGQLGSINYLILAENNFSGTLR-SIF-----NISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~~p-~~~-----~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g  206 (258)
                      +.++++|++|++++|.+++..+ .+.     ..++|++    +++++|.+++.    +|..+..+++|++|++++|.+++
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~----L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES----LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE----EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee----eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence            5667777777777777654332 222     2257777    77788887755    56667777888888888888876


Q ss_pred             cCCCCchhhhhhcC-----CCCCccc--ccccccc----ccchhhcCCCCCCeEeccCCcCC
Q 039201          207 GTTSDLDFITLLRN-----CSKLKTL--QYNQLTG----TIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       207 ~~p~~~~~~~~l~~-----l~~L~~L--~~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      .      .+..+..     .+.|++|  ++|++++    .+|..+..+++|++|++++|+++
T Consensus       356 ~------~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          356 A------GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             H------HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             c------cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            4      2233322     5677777  8899986    78888888999999999999886

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=8.7e-16  Score=128.97  Aligned_cols=163  Identities=20%  Similarity=0.196  Sum_probs=111.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.++++++.+++. + .+..+++|++|++++|.++ .+| .+..+++|++|+ ++|.+++ +|+ +.++++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence            344555666666543 2 4567777778888877776 455 567777777777 6666664 444 7777788888888


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|++++ +|.+.. ++|++    |++++|++++ +| .++.+++|++|++++|.+++.        +.++.+++|+.|  
T Consensus        94 ~N~l~~-l~~~~~-~~L~~----L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~--------~~l~~l~~L~~L~L  157 (263)
T 1xeu_A           94 RNRLKN-LNGIPS-ACLSR----LFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI--------VMLGFLSKLEVLDL  157 (263)
T ss_dssp             SSCCSC-CTTCCC-SSCCE----EECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC--------GGGGGCTTCCEEEC
T ss_pred             CCccCC-cCcccc-CcccE----EEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC--------hHHccCCCCCEEEC
Confidence            887774 442233 77777    7777777775 33 477777788888888877762        256667777766  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ++|++++.  ..+..+++|+.|++++|+++
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            77777754  56777777888888777764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.64  E-value=2.5e-18  Score=138.37  Aligned_cols=155  Identities=18%  Similarity=0.198  Sum_probs=91.4

Q ss_pred             cEEEEEcCCCCCcccCCc------cCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCC
Q 039201           71 RVTKLDLRSKSIGGFLSP------FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSI  143 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~------~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L  143 (258)
                      +++.++++.+.+.|.+|.      .+..+++|++|++++|.+++ +| .+.++++|++|+ ++|.+. .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            455555666666665554      66677777777777777764 55 566666777776 555555 566655566667


Q ss_pred             CEEEccccccccccccccCCCCcceecceeecCCCccccccC-ccccCCCCCCeEecCCCcCCccCCCC---ch-hhhhh
Q 039201          144 NYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLG-IDFNSLINLARLNLGQKNLGIGTTSD---LD-FITLL  218 (258)
Q Consensus       144 ~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip-~~~~~l~~L~~L~ls~N~l~g~~p~~---~~-~~~~l  218 (258)
                      ++|++++|++++ +|.+..+++|++    +++++|++++.-+ ..+..+++|++|++++|.+++.+|..   -. ....+
T Consensus        96 ~~L~L~~N~l~~-l~~~~~l~~L~~----L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           96 EELWISYNQIAS-LSGIEKLVNLRV----LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             SEEEEEEEECCC-HHHHHHHHHSSE----EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CEEECcCCcCCc-CCccccCCCCCE----EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            777777776664 445556666666    6666666653211 34666666777777776666543221   00 01124


Q ss_pred             cCCCCCccccccccc
Q 039201          219 RNCSKLKTLQYNQLT  233 (258)
Q Consensus       219 ~~l~~L~~L~~N~l~  233 (258)
                      ..+++|+.|++|.++
T Consensus       171 ~~l~~L~~Ld~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLDGMPVD  185 (198)
T ss_dssp             HHCSSCSEECCGGGT
T ss_pred             HhCCCcEEECCcccC
Confidence            555555555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=2.3e-15  Score=120.63  Aligned_cols=124  Identities=21%  Similarity=0.243  Sum_probs=95.2

Q ss_pred             CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceee
Q 039201           97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETE  174 (258)
Q Consensus        97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~  174 (258)
                      +++++++|.++ .+|..+.  ++|++|+ ++|.++ .+|..+.++++|++|++++|++++..| .+.++++|++    |+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~----L~   84 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT----LI   84 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EE
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE----EE
Confidence            57899999987 7887653  5788888 666666 788888888899999999998887666 7888888888    88


Q ss_pred             cCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccccc
Q 039201          175 KSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTG  234 (258)
Q Consensus       175 l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g  234 (258)
                      +++|++++..|..+..+++|++|++++|.+++. |     +..+..+++|+.|  ++|.+..
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~-----~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV-P-----EGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC-C-----TTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCee-C-----hhhhhcCccccEEEeCCCCeec
Confidence            889988877777788888889998888888763 1     2235555666655  6666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=4.8e-15  Score=116.77  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=97.7

Q ss_pred             CCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceeccee
Q 039201           96 VRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSET  173 (258)
Q Consensus        96 L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L  173 (258)
                      .+.+++++|+++ .+|..+  .++|++|+ ++|.+.+..+..+.++++|++|++++|++++..+ .+..+++|++    +
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~----L   81 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI----L   81 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE----E
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE----E
Confidence            478899999887 577544  36888888 7777776555667888999999999999885555 5788889999    8


Q ss_pred             ecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccc
Q 039201          174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIP  237 (258)
Q Consensus       174 ~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip  237 (258)
                      ++++|++++..+..+..+++|++|++++|.+++. |     +..+.++++|++|  ++|++++..|
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~-----~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-P-----DGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-C-----TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcceEe-C-----HHHhcCCcccCEEEecCCCeeccCc
Confidence            8899998876666678888999999999988863 2     2234566666666  7777776554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=1.6e-17  Score=149.46  Aligned_cols=180  Identities=21%  Similarity=0.190  Sum_probs=116.0

Q ss_pred             cEEEEEcCCCCCcc----cCCccCCCCCCCCEEEccCCCCcCCCCcccC-----CCCCCcEEc-CCCccCCC----CCcc
Q 039201           71 RVTKLDLRSKSIGG----FLSPFVGNPSFVRVIVLANNSYYGEIPNEVG-----CLSRLETLI-GGYRLGGK----IPES  136 (258)
Q Consensus        71 ~v~~l~l~~~~l~g----~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~-----~l~~L~~L~-~~n~l~g~----ip~~  136 (258)
                      ++++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|+ ++|.+++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            58888888888873    5677888888888888888887654333222     356788888 66776653    3455


Q ss_pred             cCCCCCCCEEEccccccccccc-ccc-----CCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCc
Q 039201          137 LGQLGSINYLILAENNFSGTLR-SIF-----NISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~~p-~~~-----~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g  206 (258)
                      +..+++|++|++++|.++...+ .+.     ..++|++    +++++|++++.    ++..+..+++|++|++++|.+++
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~----L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  241 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA----LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  241 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCE----EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceE----EEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence            6667888888888888765433 332     2557777    77788877653    56667777788888888877765


Q ss_pred             cCCCCchh-hhhhcCCCCCccc--cccccccc----cchhhcCCCCCCeEeccCCcC
Q 039201          207 GTTSDLDF-ITLLRNCSKLKTL--QYNQLTGT----IPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       207 ~~p~~~~~-~~~l~~l~~L~~L--~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      ....  .+ +.....+++|++|  ++|++++.    ++..+..+++|++|++++|++
T Consensus       242 ~~~~--~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          242 VGMA--ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             HHHH--HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             HHHH--HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence            2100  00 1111234555555  56666643    555555566666666666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=1.5e-18  Score=139.64  Aligned_cols=152  Identities=21%  Similarity=0.192  Sum_probs=128.4

Q ss_pred             CCCCCCCCEEEccCCCCcCCCCc------ccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-ccc
Q 039201           90 VGNPSFVRVIVLANNSYYGEIPN------EVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIF  161 (258)
Q Consensus        90 ~~~l~~L~~L~Ls~n~l~g~~p~------~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~  161 (258)
                      +.....++.++++.+.+.|.+|.      .+.++++|++|+ ++|.+.+ +| .+.++++|++|++++|.++ .+| .+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            45567888889999999998887      889999999999 7788876 78 8899999999999999998 678 677


Q ss_pred             CCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh
Q 039201          162 NISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT  239 (258)
Q Consensus       162 ~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~  239 (258)
                      .+++|++    +++++|++++ +| .++.+++|++|++++|.+++.     ..+..+.++++|++|  ++|++++.+|..
T Consensus        91 ~~~~L~~----L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~-----~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           91 VADTLEE----LWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNW-----GEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             HHHHCSE----EEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCH-----HHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             cCCcCCE----EECcCCcCCc-CC-ccccCCCCCEEECCCCcCCch-----hHHHHHhcCCCCCEEEecCCccccccccc
Confidence            7899999    9999999986 56 688999999999999999862     022478889999988  899999887753


Q ss_pred             ----------hcCCCCCCeEeccCCcCC
Q 039201          240 ----------TGELRNLQAPDLSENNLN  257 (258)
Q Consensus       240 ----------l~~l~~L~~L~Ls~N~l~  257 (258)
                                +..+++|++||  +|.++
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             cchHHHHHHHHHhCCCcEEEC--CcccC
Confidence                      78899999998  55543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.57  E-value=6.2e-15  Score=116.16  Aligned_cols=127  Identities=14%  Similarity=0.126  Sum_probs=82.5

Q ss_pred             cCCCCCCCCEEEccCCCCcCCCCcccCCCC-CCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccccccccc-ccCCCC
Q 039201           89 FVGNPSFVRVIVLANNSYYGEIPNEVGCLS-RLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRS-IFNISS  165 (258)
Q Consensus        89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~-~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~-~~~l~~  165 (258)
                      .+.+..+|++|++++|.++ .+|. +..+. +|++|+ ++|.+++.  +.+..+++|++|++++|.+++..|. +..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3567788899999999887 4554 44444 777777 66666653  5577777777777777777744333 367777


Q ss_pred             cceecceeecCCCccccccCc--cccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          166 LEFQSSETEKSKNRFTGKLGI--DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       166 L~~l~l~L~l~~n~~~g~ip~--~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      |++    +++++|++. .+|.  .+..+++|++|++++|.++.. |..  ....+..+++|++|
T Consensus        90 L~~----L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~--~~~~~~~l~~L~~L  145 (176)
T 1a9n_A           90 LTE----LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHY--RLYVIYKVPQVRVL  145 (176)
T ss_dssp             CCE----EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTH--HHHHHHHCTTCSEE
T ss_pred             CCE----EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhH--HHHHHHHCCcccee
Confidence            777    777777774 5555  667777777777777777641 110  00125555555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=8.6e-15  Score=135.69  Aligned_cols=153  Identities=19%  Similarity=0.148  Sum_probs=114.0

Q ss_pred             ccCCccCCCCCCCCEEE-ccCCCCcCCCCc------ccCC--CCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccc
Q 039201           84 GFLSPFVGNPSFVRVIV-LANNSYYGEIPN------EVGC--LSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNF  153 (258)
Q Consensus        84 g~lp~~~~~l~~L~~L~-Ls~n~l~g~~p~------~l~~--l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l  153 (258)
                      +.+|..++.+++|+.|+ ++.|.+. .++.      .+..  ...|++|+ ++|.+++ +|. ++.+++|++|+|++|.+
T Consensus       399 ~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l  475 (567)
T 1dce_A          399 LYEKETLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL  475 (567)
T ss_dssp             GGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred             cCCHHHHHHHHhcccCcchhhcccc-hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence            34445566777788887 5555322 1110      0000  12488888 7777775 776 89999999999999999


Q ss_pred             ccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccc
Q 039201          154 SGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYN  230 (258)
Q Consensus       154 ~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N  230 (258)
                      + .+| .++++++|++    |++++|++++ +| .++.+++|++|++++|.+++..     .|..++++++|+.|  ++|
T Consensus       476 ~-~lp~~~~~l~~L~~----L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~-----~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          476 R-ALPPALAALRCLEV----LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSA-----AIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             C-CCCGGGGGCTTCCE----EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSS-----TTGGGGGCTTCCEEECTTS
T ss_pred             c-ccchhhhcCCCCCE----EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCC-----CcHHHhcCCCCCEEEecCC
Confidence            8 888 8999999999    9999999986 77 7899999999999999998842     16788888888888  899


Q ss_pred             ccccccchh---hcCCCCCCeEec
Q 039201          231 QLTGTIPDT---TGELRNLQAPDL  251 (258)
Q Consensus       231 ~l~g~ip~~---l~~l~~L~~L~L  251 (258)
                      ++++..|..   +..+++|+.|++
T Consensus       544 ~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          544 SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCccHHHHHHHHCcccCccCC
Confidence            999765532   345889999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.53  E-value=4.4e-14  Score=110.85  Aligned_cols=102  Identities=22%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      +.+++++++++. +|..+  .+.|++|++++|.+++..|..+.++++|++|+ ++|++++..|..+.++++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            356666777763 66555  37788888888888765555555555555555 444444333333445555555555555


Q ss_pred             ccccccc-cccCCCCcceecceeecCCCccc
Q 039201          152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFT  181 (258)
Q Consensus       152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~  181 (258)
                      ++++..+ .+.++++|++    +++++|.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~----L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTH----IWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCE----EECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCE----EEeCCCCCC
Confidence            5553333 3444555555    455555444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.5e-14  Score=113.94  Aligned_cols=126  Identities=21%  Similarity=0.208  Sum_probs=97.4

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCC-CCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPS-FVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~-~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +++.+++++|.+.. +|. +..+. +|++|++++|.+++.  ..++++++|++|+ ++|.+++..|..+..+++|++|++
T Consensus        20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            78889999988874 454 44444 899999999988853  5678888999998 777777543343488899999999


Q ss_pred             cccccccccc---cccCCCCcceecceeecCCCccccccCcc----ccCCCCCCeEecCCCcCCc
Q 039201          149 AENNFSGTLR---SIFNISSLEFQSSETEKSKNRFTGKLGID----FNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       149 ~~n~l~g~~p---~~~~l~~L~~l~l~L~l~~n~~~g~ip~~----~~~l~~L~~L~ls~N~l~g  206 (258)
                      ++|.++ .+|   .+..+++|++    +++++|.++ .+|..    +..+++|++|+++.|....
T Consensus        96 ~~N~i~-~~~~~~~l~~l~~L~~----L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           96 TNNSLV-ELGDLDPLASLKSLTY----LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CSCCCC-CGGGGGGGGGCTTCCE----EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCcCC-cchhhHhhhcCCCCCE----EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999886 444   5778888888    888999887 56664    7888999999998887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=4e-14  Score=123.44  Aligned_cols=172  Identities=19%  Similarity=0.181  Sum_probs=114.6

Q ss_pred             CcEEEEEcCCCCCcccCCc-cCCCCCCCCE-EEccCCCCcCCCCcccCCCCCCcEEc-CCCccCC---------------
Q 039201           70 PRVTKLDLRSKSIGGFLSP-FVGNPSFVRV-IVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGG---------------  131 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~-~~~~l~~L~~-L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g---------------  131 (258)
                      ++++.|++++|.+.+.+|+ .+.+++++++ +++++|++....|..+.++++|++|+ ++|.+.+               
T Consensus        54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l  133 (350)
T 4ay9_X           54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  133 (350)
T ss_dssp             TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred             CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence            3678888888877666654 4566666654 44556666654456667777777776 3333322               


Q ss_pred             ---------CCC-cccCCC-CCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCc-cccCCCCCCeEe
Q 039201          132 ---------KIP-ESLGQL-GSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGI-DFNSLINLARLN  198 (258)
Q Consensus       132 ---------~ip-~~~~~l-~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~-~~~~l~~L~~L~  198 (258)
                               .+| ..+..+ ..+++|++++|+++ .+| .....++|++    +++.+++..+.+|. .+..+++|++|+
T Consensus       134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~----l~l~~~n~l~~i~~~~f~~l~~L~~Ld  208 (350)
T 4ay9_X          134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDE----LNLSDNNNLEELPNDVFHGASGPVILD  208 (350)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEE----EECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred             hhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhH----HhhccCCcccCCCHHHhccCcccchhh
Confidence                     222 233444 35778888888887 455 6666677888    88876444456765 468899999999


Q ss_pred             cCCCcCCccCCCCchhhhhhcCCCCCccccccccccccchhhcCCCCCCeEeccCC
Q 039201          199 LGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTIPDTTGELRNLQAPDLSEN  254 (258)
Q Consensus       199 ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N  254 (258)
                      +++|.++. +|.     ..+.++++|+.+..++++ .+| .+.++++|+.++++++
T Consensus       209 Ls~N~l~~-lp~-----~~~~~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          209 ISRTRIHS-LPS-----YGLENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTSCCCC-CCS-----SSCTTCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCH
T ss_pred             cCCCCcCc-cCh-----hhhccchHhhhccCCCcC-cCC-CchhCcChhhCcCCCC
Confidence            99999986 332     346666666666666776 777 4788999999998764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=1.5e-13  Score=108.17  Aligned_cols=102  Identities=18%  Similarity=0.167  Sum_probs=58.1

Q ss_pred             EEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc
Q 039201           73 TKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN  151 (258)
Q Consensus        73 ~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n  151 (258)
                      +.++++++++. .+|..+.  +.|++|++++|.+++..|..+.++++|++|+ ++|++++..+..+.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            46777777774 5676554  7788888888888765555555555555555 444444322223345555555555555


Q ss_pred             ccccccc-cccCCCCcceecceeecCCCccc
Q 039201          152 NFSGTLR-SIFNISSLEFQSSETEKSKNRFT  181 (258)
Q Consensus       152 ~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~  181 (258)
                      ++++..+ .+..+++|++    +++++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~----L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTH----IYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSE----EECCSSCBC
T ss_pred             ccceeCHHHhccccCCCE----EEeCCCCcc
Confidence            5553323 3444555555    555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=2.1e-13  Score=106.91  Aligned_cols=105  Identities=13%  Similarity=0.129  Sum_probs=92.2

Q ss_pred             CCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceeccee
Q 039201           96 VRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSET  173 (258)
Q Consensus        96 L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L  173 (258)
                      .+++++++|.++ .+|..+.  ++|++|+ ++|.+++..|..+.++++|++|+|++|++++..| .+..+++|++    |
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~----L   83 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ----L   83 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE----E
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE----E
Confidence            578999999998 5887663  8899999 8899998888889999999999999999996555 6789999999    9


Q ss_pred             ecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       174 ~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      ++++|++++..+..+..+++|++|++++|.++..
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999976666789999999999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=5.3e-13  Score=105.08  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceee
Q 039201           97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETE  174 (258)
Q Consensus        97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~  174 (258)
                      +.+++++|.++ .+|..+.  ++|++|+ ++|.+.+..|..+.++++|++|+|++|++++..+ .+.++++|++    |+
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~----L~   87 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ----LD   87 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EE
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE----EE
Confidence            78999999995 7898764  8999999 8899998888899999999999999999996545 5789999999    99


Q ss_pred             cCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          175 KSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       175 l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      +++|++++..+..+..+++|++|++++|.+...
T Consensus        88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999999965555699999999999999999863

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=1.9e-12  Score=112.30  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=83.5

Q ss_pred             ccccceeeCCCCCcEEEEEcCCC-CCcccCCccCCCCCCCCEEEccC-CCCcCCCCcccCCCCCCcEEc-CCCccCCCCC
Q 039201           58 CQWTGVTCSHRHPRVTKLDLRSK-SIGGFLSPFVGNPSFVRVIVLAN-NSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP  134 (258)
Q Consensus        58 c~w~gv~c~~~~~~v~~l~l~~~-~l~g~lp~~~~~l~~L~~L~Ls~-n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip  134 (258)
                      |.|..+.|.            ++ +++ .+|+ +..+++|++|+|++ |.+++..|..++++++|++|+ ++|++++..|
T Consensus         8 C~~~~v~~~------------~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            8 HGSSGLRCT------------RDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             SSSSCEECC------------SSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             ccCCEEEcC------------CCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence            666666664            44 566 3788 99999999999996 999876667788999999998 8888888888


Q ss_pred             cccCCCCCCCEEEcccccccccccc-ccCCCCcceecceeecCCCcccc
Q 039201          135 ESLGQLGSINYLILAENNFSGTLRS-IFNISSLEFQSSETEKSKNRFTG  182 (258)
Q Consensus       135 ~~~~~l~~L~~L~L~~n~l~g~~p~-~~~l~~L~~l~l~L~l~~n~~~g  182 (258)
                      ..|.++++|++|+|++|+|++..+. +..++ |++    |++.+|.+..
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~----l~l~~N~~~c  117 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE----LVLSGNPLHC  117 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE----EECCSSCCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE----EEeeCCCccC
Confidence            8888999999999999999854444 44444 888    8888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.34  E-value=1.6e-13  Score=127.11  Aligned_cols=172  Identities=16%  Similarity=0.126  Sum_probs=85.1

Q ss_pred             cEEEEEcCCCCCc----ccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc----------------------
Q 039201           71 RVTKLDLRSKSIG----GFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI----------------------  124 (258)
Q Consensus        71 ~v~~l~l~~~~l~----g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~----------------------  124 (258)
                      .++.|+++++.++    +.++..+..+++|++|++++|.+.+ +|..+.++++|++|+                      
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            4555555555554    2333344455666666666665543 333333444444443                      


Q ss_pred             -----CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeE
Q 039201          125 -----GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARL  197 (258)
Q Consensus       125 -----~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L  197 (258)
                           -.+...+.+|..+..+++|++|++++|.+++...  .+..+++|++    |+++++-..+.++.....+++|++|
T Consensus       272 L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~----L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV----LETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE----EEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             ccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE----EeccCccCHHHHHHHHHhCCCCCEE
Confidence                 1112233455555666777777777777654333  3456677777    4444222223333333455566666


Q ss_pred             ecCC-----------CcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcC-CCCCCeEecc
Q 039201          198 NLGQ-----------KNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE-LRNLQAPDLS  252 (258)
Q Consensus       198 ~ls~-----------N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~-l~~L~~L~Ls  252 (258)
                      ++++           |.+++.     ........+++|++|  +.|++++..+..++. +++|+.|+++
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~-----~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQR-----GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHH-----HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             EeecCccccccccccCccCHH-----HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            6652           344332     012223334455554  445555555555443 5555555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.33  E-value=4.3e-12  Score=110.11  Aligned_cols=104  Identities=14%  Similarity=0.074  Sum_probs=89.2

Q ss_pred             CEEEccCC-CCcCCCCcccCCCCCCcEEc-CC-CccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecce
Q 039201           97 RVIVLANN-SYYGEIPNEVGCLSRLETLI-GG-YRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSE  172 (258)
Q Consensus        97 ~~L~Ls~n-~l~g~~p~~l~~l~~L~~L~-~~-n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~  172 (258)
                      ..++.+++ +++ .+|. +..+++|++|+ ++ |.+.+..|..+.++++|++|+|++|++++..| .+.++++|++    
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~----   84 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR----   84 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE----
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE----
Confidence            45788988 888 5999 99999999999 54 88887777889999999999999999999888 8899999999    


Q ss_pred             eecCCCccccccCccccCCCCCCeEecCCCcCCcc
Q 039201          173 TEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       173 L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      |+|++|++++..+..+..++ |+.|++.+|.+...
T Consensus        85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             EeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            99999999965444455554 99999999998753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.32  E-value=1.5e-13  Score=127.30  Aligned_cols=149  Identities=16%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             EEEEEcCCCC-Ccc-cCCccCCCCCCCCEEEccCCCCcCC----CCcccCCCCCCcEEc-CCCccC----CCCCcccCCC
Q 039201           72 VTKLDLRSKS-IGG-FLSPFVGNPSFVRVIVLANNSYYGE----IPNEVGCLSRLETLI-GGYRLG----GKIPESLGQL  140 (258)
Q Consensus        72 v~~l~l~~~~-l~g-~lp~~~~~l~~L~~L~Ls~n~l~g~----~p~~l~~l~~L~~L~-~~n~l~----g~ip~~~~~l  140 (258)
                      +++|+++++. +.. .++.....+++|++|++++|.+++.    ++....++++|++|+ +.|.++    +.++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6666666654 111 1222233566666677766666543    223334566666666 445444    2233334456


Q ss_pred             CCCCEEEccccccccccc-cccCCCCcceecce-----------------------eecCCCccccccCccccCCCCCCe
Q 039201          141 GSINYLILAENNFSGTLR-SIFNISSLEFQSSE-----------------------TEKSKNRFTGKLGIDFNSLINLAR  196 (258)
Q Consensus       141 ~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~-----------------------L~l~~n~~~g~ip~~~~~l~~L~~  196 (258)
                      ++|++|++++|.+.+ +| .+.++++|++|++.                       ++++++ ..+.+|..+..+++|++
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence            666666666665553 33 44444444441110                       333332 13345666666777777


Q ss_pred             EecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          197 LNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       197 L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      |++++|.+++..     ....+.++++|+.|
T Consensus       298 L~Ls~~~l~~~~-----~~~~~~~~~~L~~L  323 (592)
T 3ogk_B          298 LDLLYALLETED-----HCTLIQKCPNLEVL  323 (592)
T ss_dssp             EEETTCCCCHHH-----HHHHHTTCTTCCEE
T ss_pred             EecCCCcCCHHH-----HHHHHHhCcCCCEE
Confidence            777777765431     22234455555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=3.2e-13  Score=118.95  Aligned_cols=165  Identities=16%  Similarity=0.157  Sum_probs=108.6

Q ss_pred             cEEEEEcCCCCCcccCCcc----CC-CCCCCCEEEccCCCCcCCCCccc-CCCCCCcEEc-CCCccCCCCCccc-----C
Q 039201           71 RVTKLDLRSKSIGGFLSPF----VG-NPSFVRVIVLANNSYYGEIPNEV-GCLSRLETLI-GGYRLGGKIPESL-----G  138 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~----~~-~l~~L~~L~Ls~n~l~g~~p~~l-~~l~~L~~L~-~~n~l~g~ip~~~-----~  138 (258)
                      .++.+++++|.++..-...    +. ....|++|+|++|.++..-...+ ..+++|++|+ ++|.++..-...+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            6889999999987543332    22 23689999999998864322222 2456788888 6776654333333     3


Q ss_pred             CCCCCCEEEcccccccc----ccc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCccCC
Q 039201          139 QLGSINYLILAENNFSG----TLR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIGTT  209 (258)
Q Consensus       139 ~l~~L~~L~L~~n~l~g----~~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~~p  209 (258)
                      ..++|++|+|++|.++.    .++ .+...++|++    |++++|.+...    ++..+...++|++|++++|.+++...
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~----L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH----LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCE----EECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCE----EeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence            46788899998888864    233 4567788888    88888888642    35556677788888888888875310


Q ss_pred             CCchhhhhhcCCCCCccc--cccccccccchhhc
Q 039201          210 SDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTG  241 (258)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~  241 (258)
                        ..+...+...+.|++|  ++|.+++.-...+.
T Consensus       229 --~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          229 --LALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             --HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             --HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence              0133445566677776  77877755444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.20  E-value=5.5e-13  Score=123.38  Aligned_cols=128  Identities=13%  Similarity=0.081  Sum_probs=80.4

Q ss_pred             cEEEEEcCCCCCcccCCccCC-CCCCCCEEEccCC-CCcCC-CCcccCCCCCCcEEc-CCCccCCCCCccc----CCCCC
Q 039201           71 RVTKLDLRSKSIGGFLSPFVG-NPSFVRVIVLANN-SYYGE-IPNEVGCLSRLETLI-GGYRLGGKIPESL----GQLGS  142 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~-~l~~L~~L~Ls~n-~l~g~-~p~~l~~l~~L~~L~-~~n~l~g~ip~~~----~~l~~  142 (258)
                      ++++|+++++.+++..+..+. .+++|++|++++| .++.. ++....++++|++|+ ++|.+++..+..+    ..+++
T Consensus       106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            677788887777766555554 5778888888877 44322 344344677888887 5566655443333    35668


Q ss_pred             CCEEEccccc--ccc-ccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201          143 INYLILAENN--FSG-TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK  202 (258)
Q Consensus       143 L~~L~L~~n~--l~g-~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N  202 (258)
                      |++|++++|.  ++. .++ ...++++|++    |++++|...+.+|..+..+++|++|+++.+
T Consensus       186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~----L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          186 LVSLNISCLASEVSFSALERLVTRCPNLKS----LKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CCEEECTTCCSCCCHHHHHHHHHHCTTCCE----EECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             CcEEEecccCCcCCHHHHHHHHHhCCCCcE----EecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            8888888775  221 122 2334677888    777777333347777777777888875544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=3.7e-13  Score=118.55  Aligned_cols=82  Identities=23%  Similarity=0.195  Sum_probs=33.6

Q ss_pred             eecCCCcccc----ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccc----cchhhcC
Q 039201          173 TEKSKNRFTG----KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGT----IPDTTGE  242 (258)
Q Consensus       173 L~l~~n~~~g----~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~----ip~~l~~  242 (258)
                      |++++|.++.    .++..+...++|++|++++|.+++...  ..+...+...+.|+.|  ++|.+++.    ++..+..
T Consensus       160 L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~  237 (372)
T 3un9_A          160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE  237 (372)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             eeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHh
Confidence            4555555432    123333444455555555555443100  0012333444444444  44544431    2223333


Q ss_pred             CCCCCeEeccCCcC
Q 039201          243 LRNLQAPDLSENNL  256 (258)
Q Consensus       243 l~~L~~L~Ls~N~l  256 (258)
                      .++|++|||++|++
T Consensus       238 ~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          238 HPSLELLHLYFNEL  251 (372)
T ss_dssp             CSSCCEEECTTSSC
T ss_pred             CCCCCEEeccCCCC
Confidence            44455555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.11  E-value=1.5e-12  Score=120.36  Aligned_cols=174  Identities=10%  Similarity=0.049  Sum_probs=89.1

Q ss_pred             cEEEEEcCCCCCcccC-CccCCCCCCCCEEEccCCCCcC-CCCcccCCCCCCcEEcC----------CCccCCCCCcccC
Q 039201           71 RVTKLDLRSKSIGGFL-SPFVGNPSFVRVIVLANNSYYG-EIPNEVGCLSRLETLIG----------GYRLGGKIPESLG  138 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~l-p~~~~~l~~L~~L~Ls~n~l~g-~~p~~l~~l~~L~~L~~----------~n~l~g~ip~~~~  138 (258)
                      +++.|+++++.+++.. +..+..+++|++|++++| +.. .++.....+++|++|+-          .+.+++.....+.
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            7888999888876542 233567788888888876 331 12222223566666631          1222221111111


Q ss_pred             -CCCCCCEEEccccccccccc-c------------------------------------ccCCCCcceecceeecCCCcc
Q 039201          139 -QLGSINYLILAENNFSGTLR-S------------------------------------IFNISSLEFQSSETEKSKNRF  180 (258)
Q Consensus       139 -~l~~L~~L~L~~n~l~g~~p-~------------------------------------~~~l~~L~~l~l~L~l~~n~~  180 (258)
                       ++++|++|.++.|.+++..+ .                                    +..+++|++    |++++ .+
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~----L~L~~-~l  443 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR----LSLSG-LL  443 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE----EECCS-SC
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE----EeecC-cc
Confidence             24444555444444443322 2                                    233444444    44433 33


Q ss_pred             ccccCccccC-CCCCCeEecCCCcCCccCCCCchhhhhh-cCCCCCccc--cccccccccch-hhcCCCCCCeEeccCCc
Q 039201          181 TGKLGIDFNS-LINLARLNLGQKNLGIGTTSDLDFITLL-RNCSKLKTL--QYNQLTGTIPD-TTGELRNLQAPDLSENN  255 (258)
Q Consensus       181 ~g~ip~~~~~-l~~L~~L~ls~N~l~g~~p~~~~~~~~l-~~l~~L~~L--~~N~l~g~ip~-~l~~l~~L~~L~Ls~N~  255 (258)
                      ++..+..++. +++|++|++++|.+++.      .+..+ .++++|+.|  ++|.+++..+. .+..+++|++|++++|+
T Consensus       444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~------~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          444 TDKVFEYIGTYAKKMEMLSVAFAGDSDL------GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESCCSSHH------HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             cHHHHHHHHHhchhccEeeccCCCCcHH------HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            3333333433 56666666666666543      22222 456666666  66666544433 33446777777777776


Q ss_pred             C
Q 039201          256 L  256 (258)
Q Consensus       256 l  256 (258)
                      +
T Consensus       518 ~  518 (594)
T 2p1m_B          518 V  518 (594)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=8.4e-10  Score=95.09  Aligned_cols=167  Identities=13%  Similarity=0.071  Sum_probs=118.4

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCc-------------c--------
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-------------L--------  129 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~-------------l--------  129 (258)
                      +++.++++. +++..-+.++..+++|+++++++|.+...-+..|.++.++.++.....             +        
T Consensus       102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            788999988 777555567999999999999999887434456677777777762220             0        


Q ss_pred             ------CCCCCccc----------------------------CCCCCCCEEEccccccccccc--cccCCCCcceeccee
Q 039201          130 ------GGKIPESL----------------------------GQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSET  173 (258)
Q Consensus       130 ------~g~ip~~~----------------------------~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L  173 (258)
                            .+.+|..+                            ..+++|+++++++|+++ .+|  .|.++++|+.    +
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~----l  255 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLK----I  255 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCE----E
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCE----E
Confidence                  00011000                            02788999999998887 565  7888999999    8


Q ss_pred             ecCCCccccccCccccCCCCCC-eEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEe
Q 039201          174 EKSKNRFTGKLGIDFNSLINLA-RLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPD  250 (258)
Q Consensus       174 ~l~~n~~~g~ip~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~  250 (258)
                      ++.+| +...-+..|..+++|+ .+++.+ .++..      -+..+.+|++|+.+  +.|+++.--+..|.++++|+.++
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEE------chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            88887 6544445688889998 999987 55432      23568888888888  67888844455788889999886


Q ss_pred             c
Q 039201          251 L  251 (258)
Q Consensus       251 L  251 (258)
                      .
T Consensus       328 ~  328 (329)
T 3sb4_A          328 K  328 (329)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=4.7e-10  Score=96.67  Aligned_cols=84  Identities=19%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             CCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCc-cc-cccccccccchhh
Q 039201          163 ISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLK-TL-QYNQLTGTIPDTT  240 (258)
Q Consensus       163 l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~-~L-~~N~l~g~ip~~l  240 (258)
                      +++|+.    +++++|+++..-+..+..+++|+.+++++| ++. |     -...+.++++|+ .+ -.++++.--+..|
T Consensus       225 ~~~L~~----l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I-----~~~aF~~~~~L~~~l~l~~~l~~I~~~aF  293 (329)
T 3sb4_A          225 MPNLVS----LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-I-----GQRVFSNCGRLAGTLELPASVTAIEFGAF  293 (329)
T ss_dssp             CTTCCE----EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-E-----CTTTTTTCTTCCEEEEECTTCCEECTTTT
T ss_pred             cCCCeE----EECCCCCcceecHhhhhCCCCCCEEECCcc-cce-e-----hHHHhhCChhccEEEEEcccceEEchhhh
Confidence            577888    889998888444456888999999999887 543 2     235688888888 77 2226663345778


Q ss_pred             cCCCCCCeEeccCCcCC
Q 039201          241 GELRNLQAPDLSENNLN  257 (258)
Q Consensus       241 ~~l~~L~~L~Ls~N~l~  257 (258)
                      ..+++|+.++++.|+++
T Consensus       294 ~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          294 MGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TTCTTEEEEEECSSCCC
T ss_pred             hCCccCCEEEeCCCccC
Confidence            99999999999988764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.98  E-value=2.2e-12  Score=108.20  Aligned_cols=170  Identities=13%  Similarity=0.079  Sum_probs=96.4

Q ss_pred             CCccccceeeCCCCCcEEEEEcCC---CCCcccCCc-cCCCCCCCCEEEccCCCCcCCCCc-ccCCCCCCcE--Ec-CCC
Q 039201           56 NLCQWTGVTCSHRHPRVTKLDLRS---KSIGGFLSP-FVGNPSFVRVIVLANNSYYGEIPN-EVGCLSRLET--LI-GGY  127 (258)
Q Consensus        56 ~~c~w~gv~c~~~~~~v~~l~l~~---~~l~g~lp~-~~~~l~~L~~L~Ls~n~l~g~~p~-~l~~l~~L~~--L~-~~n  127 (258)
                      ..|.|.|+.|+..+.+|..+...+   ..+.+.+++ .+..++.  .+...+|..++.++- .+...+.|+.  ++ ..|
T Consensus        76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N  153 (267)
T 3rw6_A           76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN  153 (267)
T ss_dssp             HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred             HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence            468999999987655776555544   223333432 2222221  233334433333321 1222222222  22 222


Q ss_pred             ---ccCCCCCcccCCCCCCCEEEcccccccc--ccc-cccCCCCcceecceeecCCCccccccCccccCCC--CCCeEec
Q 039201          128 ---RLGGKIPESLGQLGSINYLILAENNFSG--TLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLI--NLARLNL  199 (258)
Q Consensus       128 ---~l~g~ip~~~~~l~~L~~L~L~~n~l~g--~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~--~L~~L~l  199 (258)
                         .+.+.++....++++|++|+|++|++++  .+| .+..+++|+.    |+|++|++++.  ..+..+.  +|++|++
T Consensus       154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~----L~Ls~N~i~~~--~~l~~l~~l~L~~L~L  227 (267)
T 3rw6_A          154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI----LNLSGNELKSE--RELDKIKGLKLEELWL  227 (267)
T ss_dssp             SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCE----EECTTSCCCSG--GGGGGGTTSCCSEEEC
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCE----EECCCCccCCc--hhhhhcccCCcceEEc
Confidence               2222222222567889999999999987  556 5668888998    88899998864  3344444  8899999


Q ss_pred             CCCcCCccCCCCch-hhhhhcCCCCCccccccccc
Q 039201          200 GQKNLGIGTTSDLD-FITLLRNCSKLKTLQYNQLT  233 (258)
Q Consensus       200 s~N~l~g~~p~~~~-~~~~l~~l~~L~~L~~N~l~  233 (258)
                      ++|.+.+.+|..-. ....+..+++|+.|++-.++
T Consensus       228 ~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~  262 (267)
T 3rw6_A          228 DGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP  262 (267)
T ss_dssp             TTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred             cCCcCccccCcchhHHHHHHHHCcccCeECCcCCC
Confidence            99998876552111 12346667777777554443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=3.6e-10  Score=98.96  Aligned_cols=175  Identities=11%  Similarity=0.113  Sum_probs=106.4

Q ss_pred             cEEEEEcCCCCCcc-c-------CCccCCCCCCCCEEEccCCCCc---------CCCCcccCCCCCCcEEcCCCccCCCC
Q 039201           71 RVTKLDLRSKSIGG-F-------LSPFVGNPSFVRVIVLANNSYY---------GEIPNEVGCLSRLETLIGGYRLGGKI  133 (258)
Q Consensus        71 ~v~~l~l~~~~l~g-~-------lp~~~~~l~~L~~L~Ls~n~l~---------g~~p~~l~~l~~L~~L~~~n~l~g~i  133 (258)
                      +|+.|.+...++.| .       +.+++..+++|+.|.+.++...         +.++..+..+++|+.|+...+..-.+
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l  187 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI  187 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence            67777777655543 2       1234556788888888765331         23444456778888888322211134


Q ss_pred             CcccCCCCCCCEEEccccccccccc-ccc--CCCCcceecceeecC--CCccccc-----cCccc--cCCCCCCeEecCC
Q 039201          134 PESLGQLGSINYLILAENNFSGTLR-SIF--NISSLEFQSSETEKS--KNRFTGK-----LGIDF--NSLINLARLNLGQ  201 (258)
Q Consensus       134 p~~~~~l~~L~~L~L~~n~l~g~~p-~~~--~l~~L~~l~l~L~l~--~n~~~g~-----ip~~~--~~l~~L~~L~ls~  201 (258)
                      |. + .+++|++|++..+.++.... .+.  .+++|++    |+|+  .|...|.     +...+  ..+++|++|++.+
T Consensus       188 ~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~----L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~  261 (362)
T 2ra8_A          188 GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK----LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD  261 (362)
T ss_dssp             CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCE----EEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred             cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcE----EEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence            44 3 37889999998887764332 333  6888888    5543  2222111     11122  3578899999988


Q ss_pred             CcCCccCCCCchhhhhh---cCCCCCccc--cccccccc----cchhhcCCCCCCeEeccCCcCC
Q 039201          202 KNLGIGTTSDLDFITLL---RNCSKLKTL--QYNQLTGT----IPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       202 N~l~g~~p~~~~~~~~l---~~l~~L~~L--~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      |.+.+..      +..+   ..+++|+.|  +.|.+++.    ++..+..+++|+.|++++|.++
T Consensus       262 ~~i~~~~------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          262 AEEQNVV------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTHHHH------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCchHH------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            8887542      2222   245667776  88888764    4444456788999999988875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.67  E-value=7.5e-09  Score=90.60  Aligned_cols=175  Identities=14%  Similarity=0.127  Sum_probs=109.7

Q ss_pred             CcEEEEEcCCCCC---------cccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCccc--
Q 039201           70 PRVTKLDLRSKSI---------GGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESL--  137 (258)
Q Consensus        70 ~~v~~l~l~~~~l---------~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~--  137 (258)
                      ++++.|.+.....         .+.+...+..+++|+.|++++|.- -.++. + .+++|++|+ ..+.+.......+  
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence            4788888765432         123445567789999999988731 13454 3 378899998 4444443222233  


Q ss_pred             CCCCCCCEEEccc--cccccc--c----ccc--cCCCCcceecceeecCCCccccccCcccc---CCCCCCeEecCCCcC
Q 039201          138 GQLGSINYLILAE--NNFSGT--L----RSI--FNISSLEFQSSETEKSKNRFTGKLGIDFN---SLINLARLNLGQKNL  204 (258)
Q Consensus       138 ~~l~~L~~L~L~~--n~l~g~--~----p~~--~~l~~L~~l~l~L~l~~n~~~g~ip~~~~---~l~~L~~L~ls~N~l  204 (258)
                      ..+++|++|+|+.  |...|.  +    +.+  ..+++|++    |++.+|.+....+..+.   .+++|++|+++.|.+
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~----L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW----LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE----EEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE----EeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            3789999999863  222221  1    212  35789999    88889988755444443   578999999999998


Q ss_pred             CccCCCCchhhhhhcCCCCCccc--cccccccccchhhcC-CCCCCeEeccCCc
Q 039201          205 GIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGE-LRNLQAPDLSENN  255 (258)
Q Consensus       205 ~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~-l~~L~~L~Ls~N~  255 (258)
                      ++..+.  .++..+.++++|+.|  ++|.++...-..+.. +  ...++++.|+
T Consensus       292 ~d~G~~--~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          292 TDEGAR--LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             BHHHHH--HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ChHHHH--HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            764110  123344566777777  788887554444443 2  3567877764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.59  E-value=6.3e-07  Score=79.37  Aligned_cols=78  Identities=9%  Similarity=0.069  Sum_probs=39.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAE  150 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~  150 (258)
                      .++.+.+.. ++...-+..+.++.+|+.++++.|.++ .+|...-..++|+.+...+++...-...+.++++|+.+++..
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence            355566654 444333346777777777777777665 344322224555555532333321123344455555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=4.7e-08  Score=81.81  Aligned_cols=105  Identities=25%  Similarity=0.188  Sum_probs=76.4

Q ss_pred             cCCCCCCCE--EEccccc---cccccc-cccCCCCcceecceeecCCCcccc--ccCccccCCCCCCeEecCCCcCCccC
Q 039201          137 LGQLGSINY--LILAENN---FSGTLR-SIFNISSLEFQSSETEKSKNRFTG--KLGIDFNSLINLARLNLGQKNLGIGT  208 (258)
Q Consensus       137 ~~~l~~L~~--L~L~~n~---l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g--~ip~~~~~l~~L~~L~ls~N~l~g~~  208 (258)
                      +...+.|+.  ++++.|.   +.+.++ ...++++|+.    |+|++|++++  .+|..+..+++|+.|+|++|.+++. 
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~----L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-  211 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLS----LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-  211 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCE----EECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCE----EECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-
Confidence            444444554  6667774   333334 3357899999    9999999998  6778888999999999999999973 


Q ss_pred             CCCchhhhhhcCCCCCccc--cccccccccch-------hhcCCCCCCeEec
Q 039201          209 TSDLDFITLLRNCSKLKTL--QYNQLTGTIPD-------TTGELRNLQAPDL  251 (258)
Q Consensus       209 p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~-------~l~~l~~L~~L~L  251 (258)
                          .....+..+ .|+.|  ++|.+++.+|.       .+..+++|+.||=
T Consensus       212 ----~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          212 ----RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             ----GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ----hhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence                112333333 67777  89999988773       3678999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1.9e-08  Score=79.64  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=42.4

Q ss_pred             cCCCCCCCEEEccccccccc----cc-cccCCCCcceecceeec--CCCccccc----cCccccCCCCCCeEecCCCcCC
Q 039201          137 LGQLGSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEK--SKNRFTGK----LGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l--~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      +...++|++|+|++|.++..    +. .+...++|++    |++  ++|.+...    +...+...++|++|++++|.+.
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~----L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIE----LRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCE----EECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceE----EEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44456777788888877632    33 5556677777    777  66777543    3344555677888888877764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.25  E-value=8.6e-06  Score=72.04  Aligned_cols=122  Identities=15%  Similarity=0.066  Sum_probs=63.6

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEcc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .+++.++++.+++.. ++........|+.+.+..+ +.---...|.++++|+.++-.+++...-...+.+ .+|+.+.+ 
T Consensus       180 ~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-  255 (401)
T 4fdw_A          180 YNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-  255 (401)
T ss_dssp             TTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-
T ss_pred             ccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-
Confidence            368889998888764 4443333578888888754 4422234566777777776333333111122333 45555555 


Q ss_pred             ccccccccc--cccCCCCcceecceeecCCCccc-----cccCccccCCCCCCeEecC
Q 039201          150 ENNFSGTLR--SIFNISSLEFQSSETEKSKNRFT-----GKLGIDFNSLINLARLNLG  200 (258)
Q Consensus       150 ~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~-----g~ip~~~~~l~~L~~L~ls  200 (258)
                      .+.++ .++  .+.++++|+.    +++.+|.+.     ..-+..+..+++|+.+++.
T Consensus       256 p~~i~-~I~~~aF~~c~~L~~----l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          256 PNGVT-NIASRAFYYCPELAE----VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             ETTCC-EECTTTTTTCTTCCE----EEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             CCCcc-EEChhHhhCCCCCCE----EEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            23333 232  4555555555    444444432     1112334455555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.25  E-value=2.3e-07  Score=73.32  Aligned_cols=113  Identities=13%  Similarity=0.047  Sum_probs=52.9

Q ss_pred             CCCCCCCEEEcccc-ccccc----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCcc
Q 039201          138 GQLGSINYLILAEN-NFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       138 ~~l~~L~~L~L~~n-~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      ...++|++|+|++| .+...    +. .+...++|++    |++++|++...    +...+...++|++|++++|.++..
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~----L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKK----FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCE----EECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCE----EECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            44455555555555 44421    11 3334455555    55555555321    222333444555555555555432


Q ss_pred             CCCCchhhhhhcCCCCCccc----cccccccc----cchhhcCCCCCCeEeccCCcC
Q 039201          208 TTSDLDFITLLRNCSKLKTL----QYNQLTGT----IPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       208 ~p~~~~~~~~l~~l~~L~~L----~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      --  ..+...+...+.|++|    ++|.+...    +...+...++|++|+|++|++
T Consensus       109 g~--~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          109 GI--LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HH--HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HH--HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            00  0012334444444444    23555432    333444557788888887765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.13  E-value=0.00039  Score=54.16  Aligned_cols=85  Identities=12%  Similarity=0.045  Sum_probs=53.4

Q ss_pred             CCcccCCCCCCCEEEccccccccc-cccccCCCCcceecceeecCCCc-cccccCccccCC----CCCCeEecCCCc-CC
Q 039201          133 IPESLGQLGSINYLILAENNFSGT-LRSIFNISSLEFQSSETEKSKNR-FTGKLGIDFNSL----INLARLNLGQKN-LG  205 (258)
Q Consensus       133 ip~~~~~l~~L~~L~L~~n~l~g~-~p~~~~l~~L~~l~l~L~l~~n~-~~g~ip~~~~~l----~~L~~L~ls~N~-l~  205 (258)
                      +|.....-.+|++||++++.++.. +..+..+++|++    |+|++|. ++..--..++.+    ++|++|+++++. ++
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~----L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEK----IRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCE----EEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCE----EEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            344332334688888888887642 225667888888    7788774 554433345553    368888888774 66


Q ss_pred             ccCCCCchhhhhhcCCCCCccc
Q 039201          206 IGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       206 g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      ..      -...+.++++|++|
T Consensus       129 D~------Gl~~L~~~~~L~~L  144 (176)
T 3e4g_A          129 DK------GIIALHHFRNLKYL  144 (176)
T ss_dssp             HH------HHHHGGGCTTCCEE
T ss_pred             HH------HHHHHhcCCCCCEE
Confidence            54      33456667777766

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.08  E-value=0.00021  Score=55.65  Aligned_cols=65  Identities=18%  Similarity=0.130  Sum_probs=42.7

Q ss_pred             cCCCCCCCEEEccccc-cccc-cccccCC----CCcceecceeecCCCc-cccccCccccCCCCCCeEecCCCc-CC
Q 039201          137 LGQLGSINYLILAENN-FSGT-LRSIFNI----SSLEFQSSETEKSKNR-FTGKLGIDFNSLINLARLNLGQKN-LG  205 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~-l~g~-~p~~~~l----~~L~~l~l~L~l~~n~-~~g~ip~~~~~l~~L~~L~ls~N~-l~  205 (258)
                      +.++++|++|+|+++. ++.. +..+..+    ++|++    |++++|. ++..--..+.++++|++|+++++. ++
T Consensus        81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~----L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLE----MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCE----EEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCE----EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            5667888888888874 5432 1134443    36888    7787764 654434456778888888888775 44

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.65  E-value=0.012  Score=51.24  Aligned_cols=169  Identities=14%  Similarity=0.073  Sum_probs=80.9

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCc-------------cC-CCCC--
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYR-------------LG-GKIP--  134 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~-------------l~-g~ip--  134 (258)
                      .++.+.+..+- .-.-...+..+.+|+.+++..+ ++-.-...+.++..|+.+...+.             +. -.+|  
T Consensus       163 ~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~  240 (394)
T 4fs7_A          163 SLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS  240 (394)
T ss_dssp             TCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT
T ss_pred             CCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC
Confidence            57777776542 2222345677778888877655 22111233445555554431000             00 0011  


Q ss_pred             ------cccCCCCCCCEEEcccccccc-------------------ccc--cccCCCCcceecceeecCCCccccccCcc
Q 039201          135 ------ESLGQLGSINYLILAENNFSG-------------------TLR--SIFNISSLEFQSSETEKSKNRFTGKLGID  187 (258)
Q Consensus       135 ------~~~~~l~~L~~L~L~~n~l~g-------------------~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~  187 (258)
                            ..+.++.+|+.+.+..+...-                   .++  .+..+.+|+.    +.+.++ +...-...
T Consensus       241 ~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~----i~l~~~-i~~I~~~a  315 (394)
T 4fs7_A          241 FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTE----VKLLDS-VKFIGEEA  315 (394)
T ss_dssp             CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCE----EEECTT-CCEECTTT
T ss_pred             ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccc----cccccc-cceechhh
Confidence                  123445566666655443210                   122  2334445555    444332 22111234


Q ss_pred             ccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCcccc-cccccccc-chhhcCCCCCCeEeccCC
Q 039201          188 FNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQ-YNQLTGTI-PDTTGELRNLQAPDLSEN  254 (258)
Q Consensus       188 ~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~-~N~l~g~i-p~~l~~l~~L~~L~Ls~N  254 (258)
                      +..+.+|+.+++..+ ++. |     -...+.+|++|+.+. ...++ .| ...|..+.+|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~-v~~-I-----~~~aF~~c~~L~~i~lp~~l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEE-I-----GKRSFRGCTSLSNINFPLSLR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCE-E-----CTTTTTTCTTCCEECCCTTCC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             hcCCCCCCEEEeCCc-ccE-E-----hHHhccCCCCCCEEEECcccc-EehHHHhhCCCCCCEEEECCC
Confidence            556667777776543 221 1     124566677777661 12244 33 345677788888877544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.48  E-value=0.044  Score=47.65  Aligned_cols=122  Identities=18%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEcCCCcc--------CC------CC--
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLIGGYRL--------GG------KI--  133 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~~~n~l--------~g------~i--  133 (258)
                      .++++.++. +++..-..++.++++|+.+++.++ ++ .++ ..+.++++|+.+...+.+        .+      .+  
T Consensus        72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~  148 (394)
T 4fs7_A           72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE  148 (394)
T ss_dssp             TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred             CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence            688888864 354333457888999999999765 33 232 345566666655411111        00      01  


Q ss_pred             ------CcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCC
Q 039201          134 ------PESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQK  202 (258)
Q Consensus       134 ------p~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N  202 (258)
                            ...+.++++|+.+.+..+..  .++  .+.++++|+.    +++..+ +.-.-...+.++..|+.+.+..+
T Consensus       149 ~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~----i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          149 GVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKS----IKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCB----CCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             cccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceE----EEcCCC-ceEeCchhhccccccceeecCCC
Confidence                  12466778888888865532  344  5667788888    666554 22222334556666776666544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.26  E-value=0.0079  Score=44.21  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=16.9

Q ss_pred             CCCEEEccccccccccc--cccCCCCcceecceeecCCCcc
Q 039201          142 SINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRF  180 (258)
Q Consensus       142 ~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~  180 (258)
                      +|++|+|++|+++ .+|  .+..+++|++    ++|++|.+
T Consensus        32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~----L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLT-ALPPGLLDALPALRT----AHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCS-SCCTTTGGGCTTCCE----EECCSSCC
T ss_pred             CCCEEECCCCcCC-ccChhhhhhccccCE----EEecCCCe
Confidence            4555555555555 233  3444555555    55555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.16  E-value=0.04  Score=47.96  Aligned_cols=127  Identities=11%  Similarity=0.085  Sum_probs=60.5

Q ss_pred             ccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccC
Q 039201          113 EVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNS  190 (258)
Q Consensus       113 ~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~  190 (258)
                      .+.+++.|+.+.-.+.....-...+.++++|+.+.+.. .++ .++  .+.++.+|+.    +++..+ ++..-...+..
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~----i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKS----IDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCE----EECCTT-CCEECTTTTTT
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCC-ccc-ccCceeecCCCCcCE----EEeCCc-ccEehHhHhhC
Confidence            34556666666532222211123456667777777743 333 344  5666677777    666543 33222334666


Q ss_pred             CCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcC
Q 039201          191 LINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNL  256 (258)
Q Consensus       191 l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  256 (258)
                      +.+|+.+.+..+ ++. |     -...+.+|++|+.+  .++...   -..+....+|+.+.+..|.+
T Consensus       333 C~~L~~i~ip~s-v~~-I-----~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          333 CEQLERIAIPSS-VTK-I-----PESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEECTT-CCB-C-----CGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCCCEEEECcc-cCE-E-----hHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            777777777543 221 1     12456667777666  333222   13455566777777766543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.01  E-value=0.028  Score=48.93  Aligned_cols=122  Identities=11%  Similarity=0.073  Sum_probs=82.3

Q ss_pred             ccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCC
Q 039201           88 PFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISS  165 (258)
Q Consensus        88 ~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~  165 (258)
                      ..+.....|+.+.+.++... .-...+.+++.|+.+.-.+.+...-...+.++.+|+.+++..+ ++ .+.  .|.++++
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCC
Confidence            46778889999998765432 1234567888999888555555322346788999999999764 44 454  6788999


Q ss_pred             cceecceeecCCCcccccc-CccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          166 LEFQSSETEKSKNRFTGKL-GIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       166 L~~l~l~L~l~~n~~~g~i-p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      |+.    +.+..+ ++ .| ...+.++++|+.+++.++...         ...+..++.|+.+
T Consensus       336 L~~----i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~---------~~~~~~~~~L~~i  383 (394)
T 4gt6_A          336 LER----IAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQ---------WNAISTDSGLQNL  383 (394)
T ss_dssp             CCE----EEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHH---------HHTCBCCCCC---
T ss_pred             CCE----EEECcc-cC-EEhHhHhhCCCCCCEEEECCceee---------hhhhhccCCCCEE
Confidence            999    777654 44 34 346888999999999877542         1345555556554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.85  E-value=0.13  Score=44.19  Aligned_cols=58  Identities=14%  Similarity=0.059  Sum_probs=26.9

Q ss_pred             cCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecC
Q 039201          137 LGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLG  200 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls  200 (258)
                      +.++.+|+.+.+..+ ++ .++  .+.++++|+.    +.+.++.++..-...+.++.+|+.+.+.
T Consensus       259 F~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~----i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTK----VVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCE----EEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceeehhcccccccc-ce-ecccccccccccccc----ccccccccceehhhhhcCCCCCCEEEcC
Confidence            334445555555332 22 222  3445555555    5555554442223345555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.38  E-value=0.019  Score=42.16  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             eecCCCccc-cccCccccCCCCCCeEecCCCcCCc
Q 039201          173 TEKSKNRFT-GKLGIDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       173 L~l~~n~~~-g~ip~~~~~l~~L~~L~ls~N~l~g  206 (258)
                      ++.++++++ ..+|..+  -++|++|+|++|.|+.
T Consensus        13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~   45 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTA   45 (130)
T ss_dssp             EECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSS
T ss_pred             EEeCCCCCccccCCCCC--CcCCCEEECCCCcCCc
Confidence            666777765 3566533  2357777777777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.36  E-value=0.092  Score=45.19  Aligned_cols=106  Identities=9%  Similarity=0.011  Sum_probs=68.9

Q ss_pred             cCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCc
Q 039201           89 FVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSL  166 (258)
Q Consensus        89 ~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L  166 (258)
                      .+.....|+.+.+..+ ++.--...+.++.+|+.+.-.+.+...-...+.++.+|+.+.+.++.++ .++  .+.++++|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccc-eehhhhhcCCCCC
Confidence            4455666666666544 2211123455677777776333343222245788999999999988887 455  78899999


Q ss_pred             ceecceeecCCCcccccc-CccccCCCCCCeEecCCC
Q 039201          167 EFQSSETEKSKNRFTGKL-GIDFNSLINLARLNLGQK  202 (258)
Q Consensus       167 ~~l~l~L~l~~n~~~g~i-p~~~~~l~~L~~L~ls~N  202 (258)
                      +.    +.+..+ ++ .| ...+.++++|+.+.+..+
T Consensus       313 ~~----i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          313 SS----VTLPTA-LK-TIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CE----EECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred             CE----EEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence            99    877654 44 34 345778889998887543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.12  E-value=0.0062  Score=48.18  Aligned_cols=110  Identities=12%  Similarity=0.005  Sum_probs=49.0

Q ss_pred             CCCCCEEEcccc-cccc----ccc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCccCC
Q 039201          140 LGSINYLILAEN-NFSG----TLR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIGTT  209 (258)
Q Consensus       140 l~~L~~L~L~~n-~l~g----~~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~~p  209 (258)
                      -+.|++|+|++| ++..    .+- .+..-+.|+.    |+|++|++...    +...+..-+.|++|+|+.|.+.+.- 
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~----L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G-  114 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEK----FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL-  114 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCE----EECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH-
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCE----EEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH-
Confidence            345555666553 4431    111 3334455555    55566655422    2222333445666666666654320 


Q ss_pred             CCchhhhhhcCCCCCccc--ccc---cccc----ccchhhcCCCCCCeEeccCCc
Q 039201          210 SDLDFITLLRNCSKLKTL--QYN---QLTG----TIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       210 ~~~~~~~~l~~l~~L~~L--~~N---~l~g----~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                       ...+...+..-+.|+.|  ++|   .+..    .+-+.+..-+.|+.|+++.|.
T Consensus       115 -a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          115 -LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             -HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             -HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence             00112233333445544  222   2221    133334444567777776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.34  E-value=0.088  Score=41.50  Aligned_cols=90  Identities=13%  Similarity=0.108  Sum_probs=63.0

Q ss_pred             cccCCCCcceecceeecCCC-ccccc----cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccc
Q 039201          159 SIFNISSLEFQSSETEKSKN-RFTGK----LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQ  231 (258)
Q Consensus       159 ~~~~l~~L~~l~l~L~l~~n-~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~  231 (258)
                      .+.+-+.|++    |+|++| ++...    +-..+..-+.|+.|+|++|.+...--  ..+...+..-+.|+.|  +.|+
T Consensus        36 ll~~n~~L~~----L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga--~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           36 LREDDTDLKE----VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA--RGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             HHTTCSSCCE----EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH--TTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHhcCCCccE----EECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH--HHHHHHHhcCCccCeEecCCCc
Confidence            3456678999    899885 66422    44556667899999999999975311  1144556666778887  8999


Q ss_pred             cccc----cchhhcCCCCCCeEeccCC
Q 039201          232 LTGT----IPDTTGELRNLQAPDLSEN  254 (258)
Q Consensus       232 l~g~----ip~~l~~l~~L~~L~Ls~N  254 (258)
                      +...    +-+.+..-..|+.|+|++|
T Consensus       110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          110 LTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            9853    3344555577999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 34  LLAIKSQLQDPLGPTSSWKASLNLCQ--WTGVTCS--HRHPRVTKLDLRSKSIGGF--LS 87
           LL IK  L +P    SSW  + + C   W GV C    +  RV  LDL   ++     + 
Sbjct: 11  LLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69

Query: 88  PFVGNPSFVRVIVLANN 104
             + N  ++  + +   
Sbjct: 70  SSLANLPYLNFLYIGGI 86

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 92  NPSFVRVIVLANNSYYGEIPNEVGCLSRLETL-IGGYRLGGKIPESLGQLGSINYLILAE 150
               +  + L NN  YG +P  +  L  L +L +    L G+IP+  G L   +    A 
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 151 NNF 153
           N  
Sbjct: 301 NKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 128 RLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQS 170
           R+ G +P+ L QL  ++ L ++ NN  G +    N+   +  +
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 227 LQYNQLTGTIPDTTGELRNLQAPDLSENNL 256
           L+ N++ GT+P    +L+ L + ++S NNL
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 9e-06
 Identities = 31/200 (15%), Positives = 68/200 (34%), Gaps = 26/200 (13%)

Query: 58  CQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCL 117
            Q + +T       + +L L    +       + + + +  + LANN      P  +  L
Sbjct: 207 NQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 262

Query: 118 SRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKS 176
           ++L  L +G  ++    P +     +   L   +      + ++ N++ L          
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL-------Y 315

Query: 177 KNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTG 234
            N  +       +SL  L RL      +          ++ L N + +  L   +NQ++ 
Sbjct: 316 FNNISDI--SPVSSLTKLQRLFFANNKVSD--------VSSLANLTNINWLSAGHNQISD 365

Query: 235 TIPDTTGELRNLQAPDLSEN 254
             P     L  +    L++ 
Sbjct: 366 LTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 31/201 (15%), Positives = 53/201 (26%), Gaps = 48/201 (23%)

Query: 58  CQWTGVTCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCL 117
           C    V CS         DL               P    ++ L NN        +   L
Sbjct: 10  CHLRVVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNL 54

Query: 118 SRLETL-IGGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKS 176
             L TL +   ++    P +   L  +  L L++N              +     E    
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL------PEKMPKTLQELRVH 108

Query: 177 KNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLTGTI 236
           +N  T      FN L  +  + LG   L                          + +G  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPL--------------------------KSSGIE 142

Query: 237 PDTTGELRNLQAPDLSENNLN 257
                 ++ L    +++ N+ 
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.06
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.05
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.02
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.01
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.91
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.09
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.5

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2e-39  Score=277.78  Aligned_cols=226  Identities=27%  Similarity=0.427  Sum_probs=174.7

Q ss_pred             CChHH--HHHHHHHhCCCCCCCCCCCCCCCCCc--cccceeeCCCCC--cEEEEEcCCCCCcc--cCCccCCCCCCCCEE
Q 039201           28 SNKTD--HLLAIKSQLQDPLGPTSSWKASLNLC--QWTGVTCSHRHP--RVTKLDLRSKSIGG--FLSPFVGNPSFVRVI   99 (258)
Q Consensus        28 ~~~~~--aL~~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~~~--~v~~l~l~~~~l~g--~lp~~~~~l~~L~~L   99 (258)
                      |.++|  ||++||+++.+|. .+.+|..++|||  .|.||+|+....  ||++|+|+++++.|  .+|++++++++|++|
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L   81 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL   81 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccc
Confidence            44444  9999999998875 688999888999  499999986543  89999999999988  588999999999999


Q ss_pred             EccC-CCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecC
Q 039201          100 VLAN-NSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKS  176 (258)
Q Consensus       100 ~Ls~-n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~  176 (258)
                      +|++ |.+.|.+|++++++++|++|+ ++|++.+..|..+..+.+|+++++++|.+.+.+| .+.+++.+++    ++++
T Consensus        82 ~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~----l~l~  157 (313)
T d1ogqa_          82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG----ITFD  157 (313)
T ss_dssp             EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE----EECC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce----eecc
Confidence            9997 899999999999999999999 6677776666666667777777777777766666 6667777776    6666


Q ss_pred             CCccccccCccccCCCCC-CeEecCCCcCCccCCCCc----------------------------------------hhh
Q 039201          177 KNRFTGKLGIDFNSLINL-ARLNLGQKNLGIGTTSDL----------------------------------------DFI  215 (258)
Q Consensus       177 ~n~~~g~ip~~~~~l~~L-~~L~ls~N~l~g~~p~~~----------------------------------------~~~  215 (258)
                      +|.+.|.+|..++.+.++ +.+++++|.++|..|..+                                        ..+
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666666655555544 555555555554433211                                        023


Q ss_pred             hhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          216 TLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       216 ~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      +.++.++.|++|  ++|+++|.+|++++++++|++|+|++|+|+|
T Consensus       238 ~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            456666777776  8899999999999999999999999999876

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=3e-26  Score=195.27  Aligned_cols=181  Identities=23%  Similarity=0.321  Sum_probs=155.0

Q ss_pred             CcEEEEEcCC-CCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEE
Q 039201           70 PRVTKLDLRS-KSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLI  147 (258)
Q Consensus        70 ~~v~~l~l~~-~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~  147 (258)
                      ++++.|++++ |+++|.+|+.++++++|++|++++|++.+..|..+.++.+|++++ +.|.+.+.+|..+++++++++++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            4789999987 789999999999999999999999999998888889999999998 78888889999999999999999


Q ss_pred             ccccccccccc-cccCCCCc-ceecce-------------------------------------------eecCCCcccc
Q 039201          148 LAENNFSGTLR-SIFNISSL-EFQSSE-------------------------------------------TEKSKNRFTG  182 (258)
Q Consensus       148 L~~n~l~g~~p-~~~~l~~L-~~l~l~-------------------------------------------L~l~~n~~~g  182 (258)
                      +++|.++|.+| .++.+.++ +.+.+.                                           +++++|.+.+
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998888 77777665 444332                                           6667777776


Q ss_pred             ccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCc-CCC
Q 039201          183 KLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENN-LNA  258 (258)
Q Consensus       183 ~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~G  258 (258)
                      .+| .++.+++|++|++++|+++|.      +|+.++++++|++|  ++|+|+|.+|+ ++++++|+.+++++|+ ++|
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~------iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGT------LPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEEC------CCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             ccc-ccccccccccccCccCeeccc------CChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            655 477788889999999999887      56789999999988  99999999994 6889999999999997 554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.2e-21  Score=161.44  Aligned_cols=174  Identities=21%  Similarity=0.098  Sum_probs=151.4

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEc
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLIL  148 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L  148 (258)
                      +.++.|+|++|.+++..+..+..+++|++|+|++|+++ .+|. ++.+++|++|+ ++|.+.+ +|..+.++++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccccccccc-cccccccccccccccc
Confidence            36999999999998766678999999999999999997 5664 57899999999 7788774 5778899999999999


Q ss_pred             cccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc
Q 039201          149 AENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       149 ~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L  227 (258)
                      ++|.+.+..+ .+..+.++++    +++++|.+....+..+..+++++.+++++|++++.      .+..++.+++|++|
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~----L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~------~~~~~~~l~~L~~L  177 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQE----LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL------PAGLLNGLENLDTL  177 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCE----EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC------CTTTTTTCTTCCEE
T ss_pred             cccccceeecccccccccccc----ccccccccceeccccccccccchhccccccccccc------Ccccccccccccee
Confidence            9999986656 7788999999    99999999966667778899999999999999985      23557788888888


Q ss_pred             --cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 --QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 --~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                        ++|+|+ .+|+.+..+++|+.|+|++|.+.
T Consensus       178 ~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence              999999 99999999999999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.9e-21  Score=159.28  Aligned_cols=177  Identities=21%  Similarity=0.189  Sum_probs=105.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCC-------------------------CcEEc-
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSR-------------------------LETLI-  124 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~-------------------------L~~L~-  124 (258)
                      .++.|++++|+++...+..+.+++.|++|++++|.+.+..+..+..+..                         |++|+ 
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            5789999999998665568999999999999999876543343444444                         44444 


Q ss_pred             CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCc
Q 039201          125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKN  203 (258)
Q Consensus       125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~  203 (258)
                      +.|.+.+..+..+..+++|+++++++|++++..+ .+..+++|++    +++++|++++..+..+..+++|+++++++|.
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~----L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH----LFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE----EECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhh----cccccCcccccchhhhccccccchhhhhhcc
Confidence            3333333333334444455555555555543323 3444455555    5555555554444455555555555555555


Q ss_pred             CCccCCCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          204 LGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       204 l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +++.      .|..+.++++|++|  ++|++++..|..++.+++|++|++++|++.
T Consensus       189 l~~i------~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         189 VAHV------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEE------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccc------ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            5543      23445555555555  666666555566666666666666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=4.4e-20  Score=155.97  Aligned_cols=188  Identities=23%  Similarity=0.299  Sum_probs=130.3

Q ss_pred             CCccccceeeCCC---------CCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-C
Q 039201           56 NLCQWTGVTCSHR---------HPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-G  125 (258)
Q Consensus        56 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~  125 (258)
                      ..|.|+++.|+..         .+.++.|++++|+++...+..+.++++|++|++++|.+....|..+.++++|++|+ +
T Consensus         8 c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_           8 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4588999999752         24689999999999855445799999999999999999976677899999999997 3


Q ss_pred             CCccCC-----------------------------------------------CCCcccCCCCCCCEEEccccccccccc
Q 039201          126 GYRLGG-----------------------------------------------KIPESLGQLGSINYLILAENNFSGTLR  158 (258)
Q Consensus       126 ~n~l~g-----------------------------------------------~ip~~~~~l~~L~~L~L~~n~l~g~~p  158 (258)
                      +|++..                                               ..+..+..+++|+++++++|.++ .+|
T Consensus        88 ~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~  166 (305)
T d1xkua_          88 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP  166 (305)
T ss_dssp             SSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred             CCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccC
Confidence            333321                                               11112344556666666666654 344


Q ss_pred             -cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccc
Q 039201          159 -SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGT  235 (258)
Q Consensus       159 -~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~  235 (258)
                       .+  +++|+.    +++++|...+..+..+..++.+++|++++|.+++.      .+..+.++++|++|  ++|+++ .
T Consensus       167 ~~~--~~~L~~----L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~------~~~~~~~l~~L~~L~L~~N~L~-~  233 (305)
T d1xkua_         167 QGL--PPSLTE----LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV------DNGSLANTPHLRELHLNNNKLV-K  233 (305)
T ss_dssp             SSC--CTTCSE----EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE------CTTTGGGSTTCCEEECCSSCCS-S
T ss_pred             ccc--CCccCE----EECCCCcCCCCChhHhhcccccccccccccccccc------ccccccccccceeeeccccccc-c
Confidence             22  355666    66777777766666677777777777777777664      23445566666666  677776 6


Q ss_pred             cchhhcCCCCCCeEeccCCcCC
Q 039201          236 IPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       236 ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +|+++.++++|++|+|++|+++
T Consensus       234 lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         234 VPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccCCCEEECCCCccC
Confidence            6777777777777777777765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.2e-20  Score=154.30  Aligned_cols=172  Identities=23%  Similarity=0.166  Sum_probs=144.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      ...+++.++++++ .+|+.+.  +.+++|+|++|.+++..+..+.++++|++|+ ++|+++ .+|. ++.+++|++|+++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccc
Confidence            4455688899998 5787664  5899999999999864456789999999999 777776 4654 6789999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|++++..+.+.++++|++    +++++|.+.+..+..+..+.++++|++++|.++..      .+..+..++.++.+  
T Consensus        86 ~N~l~~~~~~~~~l~~L~~----L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l------~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTV----LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL------PPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCE----EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC------CTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccc----ccccccccceeecccccccccccccccccccccee------ccccccccccchhccc
Confidence            9999854348889999999    99999999877788888999999999999999874      23455667777777  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ++|++++..+..+..+++|++|+|++|+|+
T Consensus       156 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         156 ANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccCccccccccccceeecccCCCc
Confidence            999999777788999999999999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.3e-19  Score=149.27  Aligned_cols=146  Identities=18%  Similarity=0.106  Sum_probs=126.4

Q ss_pred             CcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-c
Q 039201           82 IGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-S  159 (258)
Q Consensus        82 l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~  159 (258)
                      +....+..+.++++|++|++++|.+....+..+...++|++++ .+|.+++..+..+..+++|++|++++|++++..| .
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            3333456788999999999999999866667788899999999 7888886666778899999999999999997667 8


Q ss_pred             ccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccc
Q 039201          160 IFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIP  237 (258)
Q Consensus       160 ~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip  237 (258)
                      +.++++|++    +++++|++++..|..+..+++|++|++++|.+++.      .+..++++++|++|  ++|.+.+.-+
T Consensus       173 f~~l~~L~~----l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~------~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         173 FRGLHSLDR----LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL------PTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TTTCTTCCE----EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC------CHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hccccccch----hhhhhccccccChhHhhhhhhcccccccccccccc------cccccccccccCEEEecCCCCCCCcc
Confidence            889999999    99999999999999999999999999999999985      45778899999988  8999886544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=6.6e-19  Score=139.33  Aligned_cols=168  Identities=20%  Similarity=0.244  Sum_probs=131.6

Q ss_pred             EEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc
Q 039201           75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN  152 (258)
Q Consensus        75 l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~  152 (258)
                      ++.++++++ .+|+.+.  +.+++|+|++|.+++.++ ..+.++++|++|+ ++|.+.+..+..+..+++|++|+|++|+
T Consensus        13 v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            445566676 5776553  689999999999987564 5668999999999 7889998888999999999999999999


Q ss_pred             cccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccccccc
Q 039201          153 FSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQ  231 (258)
Q Consensus       153 l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~  231 (258)
                      +++..| .|.++++|++    |+|++|++++..|..+..+++|+++++++|.+.......| +...+..    ..+..|.
T Consensus        90 l~~l~~~~F~~l~~L~~----L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~----~~l~~~~  160 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKT----LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRK----KSLNGGA  160 (192)
T ss_dssp             CCEECSSSSTTCTTCCE----EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHH----HCCSGGG
T ss_pred             ccccCHHHHhCCCcccc----cccCCccccccCHHHhcCCcccccccccccccccccchHH-Hhhhhhh----hcccCCC
Confidence            997666 7899999999    9999999998778889999999999999999986432111 1111111    1236677


Q ss_pred             cccccchhhcCCCCCCeEeccCCcCC
Q 039201          232 LTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       232 l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      ++...|..   ++.++.++++.|+|+
T Consensus       161 ~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         161 ARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             eEeCCChh---hcCCEeeecCHhhCc
Confidence            77777765   456778899988874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.3e-17  Score=132.12  Aligned_cols=160  Identities=20%  Similarity=0.254  Sum_probs=134.9

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .++.++++++.+.. ++ .+..+++|++|++++|.+++ +++ ++++++|++|+ ++|++++ +| .+.++++|++|+++
T Consensus        47 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          47 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             CccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-ccc-cccCccccccccccccccc-cc-cccccccccccccc
Confidence            68899999999875 33 37889999999999999985 553 78999999999 7788774 55 58999999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|.+. .++.+..+++++.    +++++|.+++  +..+..+++|+++++++|.+++.        +.++++++|+.|  
T Consensus       121 ~~~~~-~~~~l~~l~~l~~----l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--------~~l~~l~~L~~L~L  185 (210)
T d1h6ta2         121 HNGIS-DINGLVHLPQLES----LYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--------VPLAGLTKLQNLYL  185 (210)
T ss_dssp             TSCCC-CCGGGGGCTTCCE----EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--------GGGTTCTTCCEEEC
T ss_pred             ccccc-ccccccccccccc----cccccccccc--ccccccccccccccccccccccc--------ccccCCCCCCEEEC
Confidence            99986 4567788999999    9999999874  33578899999999999999862        348888889887  


Q ss_pred             cccccccccchhhcCCCCCCeEeccC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSE  253 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~  253 (258)
                      ++|+++ .+| .+.++++|++|+|++
T Consensus       186 s~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         186 SKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            899998 576 689999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.2e-16  Score=126.79  Aligned_cols=156  Identities=22%  Similarity=0.316  Sum_probs=127.2

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.++++++++.. ++ .+..+++|++|++++|.+++ +++ ++++++|++|+ +.|.+. .+| .+.++++|++|+++
T Consensus        41 ~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          41 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-cccccccccccccc
Confidence            78999999998874 43 47889999999999999985 443 88999999999 555554 455 48899999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|.+.. ++.+..+++|+.    +++++|++. .++ .+..+++|++|++++|.+++.        +.++++++|++|  
T Consensus       115 ~~~~~~-~~~~~~l~~L~~----L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l--------~~l~~l~~L~~L~l  179 (199)
T d2omxa2         115 NNQITD-IDPLKNLTNLNR----LELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL--------KPLANLTTLERLDI  179 (199)
T ss_dssp             SSCCCC-CGGGTTCTTCSE----EECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--------GGGTTCTTCCEEEC
T ss_pred             cccccc-ccccchhhhhHH----hhhhhhhhc-ccc-cccccccccccccccccccCC--------ccccCCCCCCEEEC
Confidence            998874 446778899999    999999987 344 588999999999999999873        347888888888  


Q ss_pred             cccccccccchhhcCCCCCCeE
Q 039201          228 QYNQLTGTIPDTTGELRNLQAP  249 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L  249 (258)
                      ++|+++ .+| .++.+++|+.|
T Consensus       180 s~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         180 SSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             CSSCCC-CCG-GGGGCTTCSEE
T ss_pred             CCCCCC-CCc-cccCCCCCCcC
Confidence            899998 455 57888998876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.6e-17  Score=130.63  Aligned_cols=189  Identities=14%  Similarity=0.145  Sum_probs=137.3

Q ss_pred             CccccceeeCCCC---------CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCc-ccCCCCCCcEEc--
Q 039201           57 LCQWTGVTCSHRH---------PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPN-EVGCLSRLETLI--  124 (258)
Q Consensus        57 ~c~w~gv~c~~~~---------~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~-~l~~l~~L~~L~--  124 (258)
                      -|....+.|....         ..+++|++++|.++...+..+.++++|++|++++|.+...+|. .+.+++++++++  
T Consensus         7 ~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1           7 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             EECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            3667778886321         2689999999999854455789999999999999998876654 567899999987  


Q ss_pred             CCCccCCCCCcccCCCCCCCEEEccccccccccc--cccCCCCcceecceeecCCCccccccCccccCCC-CCCeEecCC
Q 039201          125 GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR--SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLI-NLARLNLGQ  201 (258)
Q Consensus       125 ~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p--~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~-~L~~L~ls~  201 (258)
                      ..|++....+..+.++++|+++++++|++....+  .+..++.++.    +...++.+...-+..+..++ .++.+++++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~----~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL----DIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEE----EEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccccc----ccccccccccccccccccccccceeeeccc
Confidence            5677777777788999999999999999874322  2334555555    56666666644444555554 788899999


Q ss_pred             CcCCccCCCCchhhhhhcCCCCCccc---cccccccccch-hhcCCCCCCeEeccCCcCC
Q 039201          202 KNLGIGTTSDLDFITLLRNCSKLKTL---QYNQLTGTIPD-TTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       202 N~l~g~~p~~~~~~~~l~~l~~L~~L---~~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~  257 (258)
                      |.++..       +....+..+++.+   ++|+++ .+|. .|.++++|++|++++|+++
T Consensus       163 n~l~~i-------~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         163 NGIQEI-------HNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             SCCCEE-------CTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccc-------ccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC
Confidence            998863       2333333443333   778887 5665 4788899999999999886

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3e-16  Score=124.47  Aligned_cols=160  Identities=21%  Similarity=0.277  Sum_probs=109.2

Q ss_pred             EcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccc
Q 039201           76 DLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFS  154 (258)
Q Consensus        76 ~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~  154 (258)
                      .+..+.+++.++.  ..+.++++|++++|.++ .++ .+..+++|++|+ ++|.+++ +++ ++++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~~--~~l~~l~~L~l~~~~i~-~l~-~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEECH--HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccCH--HHhcCCCEEECCCCCCC-Ccc-ccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc
Confidence            4455555554332  35677788888888776 343 367788888888 6666665 333 778888888888888775


Q ss_pred             cccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--ccccc
Q 039201          155 GTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQL  232 (258)
Q Consensus       155 g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l  232 (258)
                       .++.+.++++|++    +++++|.....  ..+..+++|+.|++++|.+..        .+.+..++++++|  ++|++
T Consensus        98 -~~~~l~~l~~L~~----L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~--------~~~l~~~~~L~~L~l~~n~l  162 (199)
T d2omxa2          98 -DITPLANLTNLTG----LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD--------ISALSGLTSLQQLNFSSNQV  162 (199)
T ss_dssp             -CCGGGTTCTTCSE----EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC--------CGGGTTCTTCSEEECCSSCC
T ss_pred             -ccccccccccccc----ccccccccccc--cccchhhhhHHhhhhhhhhcc--------cccccccccccccccccccc
Confidence             4555667778888    77777776542  236677888888888887764        2346667777777  67777


Q ss_pred             ccccchhhcCCCCCCeEeccCCcCCC
Q 039201          233 TGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       233 ~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++ ++ .++.+++|++|++++|++++
T Consensus       163 ~~-l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         163 TD-LK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CC-CG-GGTTCTTCCEEECCSSCCCC
T ss_pred             cC-Cc-cccCCCCCCEEECCCCCCCC
Confidence            74 33 37778888888888887753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=3.8e-16  Score=131.44  Aligned_cols=172  Identities=16%  Similarity=0.152  Sum_probs=134.8

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcc------------------------------------
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNE------------------------------------  113 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~------------------------------------  113 (258)
                      ++++.|+++++.+....|..+.++++|++|++++|+++ .+|..                                    
T Consensus        55 ~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_          55 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             ccccccccccccccccchhhhhCCCccCEecccCCccC-cCccchhhhhhhhhccccchhhhhhhhhhcccccccccccc
Confidence            37888999999888766778888999999999888765 23322                                    


Q ss_pred             ------------cCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCc
Q 039201          114 ------------VGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNR  179 (258)
Q Consensus       114 ------------l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~  179 (258)
                                  +..+++|++++ .+|.+. .+|..  .+++|++|++++|..++..+ .+.+++.+++    +++++|+
T Consensus       134 n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~----L~~s~n~  206 (305)
T d1xkua_         134 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAK----LGLSFNS  206 (305)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCE----EECCSSC
T ss_pred             ccccccCCCccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccc----ccccccc
Confidence                        22333344443 344443 45544  36899999999999998888 8999999999    9999999


Q ss_pred             cccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh-------hcCCCCCCeEe
Q 039201          180 FTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT-------TGELRNLQAPD  250 (258)
Q Consensus       180 ~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~-------l~~l~~L~~L~  250 (258)
                      +.+..+..+..+++|++|++++|.++.       +|..+.++++|++|  ++|+++ .|+..       ...+.+|+.|+
T Consensus       207 l~~~~~~~~~~l~~L~~L~L~~N~L~~-------lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         207 ISAVDNGSLANTPHLRELHLNNNKLVK-------VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             CCEECTTTGGGSTTCCEEECCSSCCSS-------CCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             ccccccccccccccceeeecccccccc-------cccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEE
Confidence            998888889999999999999999985       56778889999988  899998 55432       34568899999


Q ss_pred             ccCCcCC
Q 039201          251 LSENNLN  257 (258)
Q Consensus       251 Ls~N~l~  257 (258)
                      |++|+++
T Consensus       279 L~~N~~~  285 (305)
T d1xkua_         279 LFSNPVQ  285 (305)
T ss_dssp             CCSSSSC
T ss_pred             CCCCcCc
Confidence            9999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.8e-16  Score=135.48  Aligned_cols=161  Identities=21%  Similarity=0.311  Sum_probs=112.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      +++.+++++|.++. + +.+..+++|+.|++++|.+++. ++ ++.+++|++|+ +.+.+.+ ++ .+..++.++.++++
T Consensus       220 ~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~l~~l~~~  293 (384)
T d2omza2         220 NLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQISN-IS-PLAGLTALTNLELN  293 (384)
T ss_dssp             TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-c-chhhcccccchhccccCccCCC-Cc-ccccccCCEeeccCcccCC-CC-cccccccccccccc
Confidence            56666666666653 2 3456666777777777766642 22 56666777776 4555543 22 25566777777777


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      .|.+++ ++.+..++++++    +++++|++++. + .+..+++|++|++++|.+++       + +.++++++|++|  
T Consensus       294 ~n~l~~-~~~~~~~~~l~~----L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-------l-~~l~~l~~L~~L~l  358 (384)
T d2omza2         294 ENQLED-ISPISNLKNLTY----LTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-------V-SSLANLTNINWLSA  358 (384)
T ss_dssp             SSCCSC-CGGGGGCTTCSE----EECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-------C-GGGGGCTTCCEEEC
T ss_pred             cccccc-ccccchhcccCe----EECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-------C-hhHcCCCCCCEEEC
Confidence            777663 335566777888    88899998864 3 27888999999999999876       2 357888888888  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSEN  254 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N  254 (258)
                      ++|++++..|  +.++++|++|+|++|
T Consensus       359 ~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         359 GHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCcCCCChh--hccCCCCCEeeCCCC
Confidence            8899986544  788999999999987

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.8e-15  Score=122.11  Aligned_cols=160  Identities=16%  Similarity=0.217  Sum_probs=93.0

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      .++.+++.+++++. ++ .+..+++|++|++++|.+++..|  +.+++++++++ .+|.++ .++ .+.++++|++++++
T Consensus        42 ~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECT
T ss_pred             CcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccccccc
Confidence            56677777776653 33 36667777777777776664222  56666777766 333333 333 35666666666666


Q ss_pred             ccccccccc---------------------cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccC
Q 039201          150 ENNFSGTLR---------------------SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGT  208 (258)
Q Consensus       150 ~n~l~g~~p---------------------~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~  208 (258)
                      ++...+..+                     .+.+.++|++    +++++|.+.+..  .++++++|++|++++|.+++. 
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~----L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY----LSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCE----EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhcccccccc----ccccccccccch--hhcccccceecccCCCccCCC-
Confidence            665543211                     2334455555    666666655322  256666777777777766641 


Q ss_pred             CCCchhhhhhcCCCCCccc--cccccccccchhhcCCCCCCeEecc
Q 039201          209 TSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTTGELRNLQAPDLS  252 (258)
Q Consensus       209 p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l~~l~~L~~L~Ls  252 (258)
                             +.++++++|++|  ++|+++ .+| .+.++++|+.|+++
T Consensus       189 -------~~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         189 -------SPLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             -------GGGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEE
T ss_pred             -------hhhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEee
Confidence                   235566666666  666666 344 26666777777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1e-15  Score=122.38  Aligned_cols=160  Identities=25%  Similarity=0.362  Sum_probs=129.8

Q ss_pred             EEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccccc
Q 039201           75 LDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNF  153 (258)
Q Consensus        75 l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l  153 (258)
                      ..+..+.+++.++.  ..+..|++|++++|.++. ++ .+..+++|++|+ ++|.+++ ++ .++.+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HHTTCSCTTSEECH--HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC
T ss_pred             HHhCcCccCCccCH--HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccc
Confidence            34555666655543  357789999999999974 44 378899999999 7777875 55 378999999999999999


Q ss_pred             ccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccc
Q 039201          154 SGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQ  231 (258)
Q Consensus       154 ~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~  231 (258)
                      + .+|.+..+++|+.    +++++|.+. .++ .+..+++++.+++++|.+++.        ..+.++++|+.+  ++|+
T Consensus       103 ~-~l~~l~~l~~L~~----L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~l~~~--------~~~~~l~~L~~l~l~~n~  167 (210)
T d1h6ta2         103 K-DLSSLKDLKKLKS----LSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQ  167 (210)
T ss_dssp             C-CGGGGTTCTTCCE----EECTTSCCC-CCG-GGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSC
T ss_pred             c-ccccccccccccc----ccccccccc-ccc-ccccccccccccccccccccc--------cccccccccccccccccc
Confidence            8 4677888999999    999999886 343 588999999999999999863        456777888887  8999


Q ss_pred             cccccchhhcCCCCCCeEeccCCcCC
Q 039201          232 LTGTIPDTTGELRNLQAPDLSENNLN  257 (258)
Q Consensus       232 l~g~ip~~l~~l~~L~~L~Ls~N~l~  257 (258)
                      +++ ++ .+..+++|+.|++++|+++
T Consensus       168 l~~-i~-~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         168 ISD-IV-PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccc-cc-cccCCCCCCEEECCCCCCC
Confidence            985 54 3889999999999999986

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.6e-15  Score=129.29  Aligned_cols=165  Identities=19%  Similarity=0.261  Sum_probs=135.7

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      ++..++++++.+++..|  ....++|++|++++|.++. +| .+..+++|++|+ .+|.+++. + .+..+++|++|+++
T Consensus       198 ~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~  271 (384)
T d2omza2         198 NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNL-A-PLSGLTKLTELKLG  271 (384)
T ss_dssp             TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECC
T ss_pred             ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-cc-hhhcccccchhccccCccCCC-C-cccccccCCEeecc
Confidence            67888999998886544  4667899999999999874 44 578899999999 77777753 3 38889999999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|++++ ++.+..++.++.    +++..|++++ + ..+..++++++|++++|.+++.        ..+..+++|+.|  
T Consensus       272 ~~~l~~-~~~~~~~~~l~~----l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l--------~~l~~l~~L~~L~L  336 (384)
T d2omza2         272 ANQISN-ISPLAGLTALTN----LELNENQLED-I-SPISNLKNLTYLTLYFNNISDI--------SPVSSLTKLQRLFF  336 (384)
T ss_dssp             SSCCCC-CGGGTTCTTCSE----EECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCC--------GGGGGCTTCCEEEC
T ss_pred             CcccCC-CCcccccccccc----cccccccccc-c-cccchhcccCeEECCCCCCCCC--------cccccCCCCCEEEC
Confidence            999984 445667888888    8899999885 3 3588899999999999999873        237788888888  


Q ss_pred             cccccccccchhhcCCCCCCeEeccCCcCCC
Q 039201          228 QYNQLTGTIPDTTGELRNLQAPDLSENNLNA  258 (258)
Q Consensus       228 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~G  258 (258)
                      ++|++++ +| .++.+++|++|++++|++++
T Consensus       337 ~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         337 ANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence            9999984 55 68999999999999999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=7.9e-16  Score=121.30  Aligned_cols=126  Identities=18%  Similarity=0.211  Sum_probs=92.8

Q ss_pred             CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCC-cccCCCCCCCEEEccccccccccc-cccCCCCcceeccee
Q 039201           97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIP-ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSET  173 (258)
Q Consensus        97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip-~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L  173 (258)
                      ++++.++++++ .+|+.+.  +++++|+ ++|.+++.++ ..+.++++|++|++++|++.+..+ .+..+++|++    |
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~----L   83 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE----L   83 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE----E
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccce----e
Confidence            57889999888 7887653  5778888 7777776553 456778888888888888886666 7777888888    8


Q ss_pred             ecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccc
Q 039201          174 EKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGT  235 (258)
Q Consensus       174 ~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~  235 (258)
                      ++++|++++..|..|.++++|++|+|++|.+++.      .+..+..+++|+++  ++|.+...
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i------~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV------MPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE------CTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             eeccccccccCHHHHhCCCcccccccCCcccccc------CHHHhcCCcccccccccccccccc
Confidence            8888888866666778888888888888888764      22345566666666  66666643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.3e-14  Score=117.04  Aligned_cols=139  Identities=20%  Similarity=0.282  Sum_probs=108.7

Q ss_pred             CcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCC----------------
Q 039201           70 PRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGK----------------  132 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~----------------  132 (258)
                      ++++.+++++|.+.+..|  +..+++++++++++|.++ .++ .+.++++|++++ +.+...+.                
T Consensus        63 ~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhchh
Confidence            489999999999886433  889999999999999887 454 478889999887 22222111                


Q ss_pred             ----CCcccCCCCCCCEEEccccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccC
Q 039201          133 ----IPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGT  208 (258)
Q Consensus       133 ----ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~  208 (258)
                          ....+.++++|++|++++|.+++ .+.+.++++|++    +++++|++++ +|. ++++++|++|++++|++++. 
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~l~~l~~L~~----L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i-  210 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTT----LKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-  210 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCE----EECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-
T ss_pred             hhhchhhhhcccccccccccccccccc-chhhccccccee----cccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCC-
Confidence                11235778899999999999874 345788999999    9999999985 554 88999999999999999873 


Q ss_pred             CCCchhhhhhcCCCCCccc
Q 039201          209 TSDLDFITLLRNCSKLKTL  227 (258)
Q Consensus       209 p~~~~~~~~l~~l~~L~~L  227 (258)
                            + .++++++|++|
T Consensus       211 ------~-~l~~l~~L~~L  222 (227)
T d1h6ua2         211 ------S-PLANTSNLFIV  222 (227)
T ss_dssp             ------G-GGTTCTTCCEE
T ss_pred             ------c-ccccCCCCCEE
Confidence                  2 47888888877

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=7.5e-15  Score=107.63  Aligned_cols=102  Identities=23%  Similarity=0.232  Sum_probs=70.5

Q ss_pred             CEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCCCCcceecceeec
Q 039201           97 RVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNISSLEFQSSETEK  175 (258)
Q Consensus        97 ~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l~~L~~l~l~L~l  175 (258)
                      |+|++++|+++ .+|. +.++++|++|+ ++|.++ .+|+.++.+++|++|++++|.++ .+|.+.++++|++    +++
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~----L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQE----LLL   72 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCE----EEC
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCccccccccCe----EEC
Confidence            45667777665 4443 56666666666 555554 56666777788888888888877 4566777788888    777


Q ss_pred             CCCcccccc-CccccCCCCCCeEecCCCcCCc
Q 039201          176 SKNRFTGKL-GIDFNSLINLARLNLGQKNLGI  206 (258)
Q Consensus       176 ~~n~~~g~i-p~~~~~l~~L~~L~ls~N~l~g  206 (258)
                      ++|+++..- +..++.+++|++|++++|.+++
T Consensus        73 ~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          73 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            888876322 2456777888888888888765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.1e-14  Score=105.21  Aligned_cols=114  Identities=25%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             EEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEec
Q 039201          122 TLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNL  199 (258)
Q Consensus       122 ~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~l  199 (258)
                      +|+ ++|+++ .+| .+..+++|++|++++|.++ .+| .++.+++|++    +++++|+++ .+| .++.+++|++|++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~----L~l~~N~i~-~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV----LQASDNALE-NVD-GVANLPRLQELLL   72 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE----EECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccc----ccccccccc-ccC-ccccccccCeEEC
Confidence            455 566665 444 3677777777777777776 566 6777777777    777777776 344 3677777777777


Q ss_pred             CCCcCCccCCCCchhhhhhcCCCCCccc--cccccccc--cch-hhcCCCCCCeE
Q 039201          200 GQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGT--IPD-TTGELRNLQAP  249 (258)
Q Consensus       200 s~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~--ip~-~l~~l~~L~~L  249 (258)
                      ++|.++.. |    .+..++.+++|+.+  ++|++++.  ++. .+..+|+|+.+
T Consensus        73 ~~N~i~~~-~----~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          73 CNNRLQQS-A----AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCCSS-S----TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCccCCC-C----CchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            77777652 1    12345666666666  67776632  122 23345666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.2e-14  Score=109.99  Aligned_cols=133  Identities=14%  Similarity=0.145  Sum_probs=91.8

Q ss_pred             CCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcc
Q 039201           90 VGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLE  167 (258)
Q Consensus        90 ~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~  167 (258)
                      +.+...+++|||++|+++ .+|..+..+++|++|+ ++|.+. .++ .+..+++|++|++++|+++...+ .+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            557778999999999987 5676556788888888 667666 443 47778888888888888875444 345678888


Q ss_pred             eecceeecCCCccccccC--ccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccccccccc
Q 039201          168 FQSSETEKSKNRFTGKLG--IDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTLQYNQLT  233 (258)
Q Consensus       168 ~l~l~L~l~~n~~~g~ip--~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L~~N~l~  233 (258)
                      +    +++++|++.. ++  ..+..+++|++|++++|.++.. |. + -+..+..+++|++|++..++
T Consensus        91 ~----L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~-~~-~-r~~~i~~lp~L~~LD~~~i~  150 (162)
T d1a9na_          91 E----LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KH-Y-RLYVIYKVPQVRVLDFQKVK  150 (162)
T ss_dssp             E----EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TT-H-HHHHHHHCTTCSEETTEECC
T ss_pred             c----ceeccccccc-cccccccccccccchhhcCCCccccc-cc-h-HHHHHHHCCCcCeeCCCCCC
Confidence            8    8888888763 33  3467788888888888877652 10 0 12346666677666554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8e-14  Score=106.76  Aligned_cols=121  Identities=21%  Similarity=0.204  Sum_probs=99.1

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      ++++|+|++|+++. ++..+..+++|++|++++|.++ .++ .+..+++|++|+ ++|.++...+..+..+++|++|+++
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            78999999999974 5766788999999999999998 565 488999999999 8888875444445689999999999


Q ss_pred             ccccccc--cccccCCCCcceecceeecCCCccccccCc----cccCCCCCCeEec
Q 039201          150 ENNFSGT--LRSIFNISSLEFQSSETEKSKNRFTGKLGI----DFNSLINLARLNL  199 (258)
Q Consensus       150 ~n~l~g~--~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~----~~~~l~~L~~L~l  199 (258)
                      +|+++..  +..+..+++|++    +++++|.++ ..|.    .+..+++|++||-
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~----L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTY----LCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCE----EECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccccccccccccccch----hhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            9999842  225778999999    999999986 4443    4788999999873

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.44  E-value=3.5e-13  Score=114.02  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=41.8

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      ++++|++++|+++ .+|+.+   .+|++|++++|.++ .++. +  .+.|++|+ ++|.+. .+|. ++.+++|++|+++
T Consensus        59 ~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~  128 (353)
T d1jl5a_          59 HLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVD  128 (353)
T ss_dssp             TCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeeccc
Confidence            6777777777776 556543   35566666666554 3332 1  12456666 444444 4553 4566666666666


Q ss_pred             ccccc
Q 039201          150 ENNFS  154 (258)
Q Consensus       150 ~n~l~  154 (258)
                      +|.+.
T Consensus       129 ~~~~~  133 (353)
T d1jl5a_         129 NNSLK  133 (353)
T ss_dssp             SSCCS
T ss_pred             ccccc
Confidence            66544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=6e-15  Score=116.87  Aligned_cols=140  Identities=18%  Similarity=0.189  Sum_probs=100.9

Q ss_pred             cCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccccccCC
Q 039201           85 FLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLRSIFNI  163 (258)
Q Consensus        85 ~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p~~~~l  163 (258)
                      .++..+..+++|++|+|++|.++ .++ .+.++++|++|+ ++|.+. .+|.....+++|++|++++|+++ .++.+..+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~~~~~l  114 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLSGIEKL  114 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHHHHHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cccccccc
Confidence            34567888999999999999987 565 478889999998 666665 57765556678999999999887 45566778


Q ss_pred             CCcceecceeecCCCccccccC--ccccCCCCCCeEecCCCcCCccCCCCchhh----hhhcCCCCCccccccccc
Q 039201          164 SSLEFQSSETEKSKNRFTGKLG--IDFNSLINLARLNLGQKNLGIGTTSDLDFI----TLLRNCSKLKTLQYNQLT  233 (258)
Q Consensus       164 ~~L~~l~l~L~l~~n~~~g~ip--~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~----~~l~~l~~L~~L~~N~l~  233 (258)
                      ++|++    +++++|+++. ++  ..+..+++|++|++++|.+....+.....+    ..+.++++|+.|++..++
T Consensus       115 ~~L~~----L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~  185 (198)
T d1m9la_         115 VNLRV----LYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             HHSSE----EEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGT
T ss_pred             ccccc----cccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCC
Confidence            88888    8889998873 33  357888999999999998766433222111    125556666666554443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.4e-11  Score=92.08  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             cccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCC
Q 039201          135 ESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLG  205 (258)
Q Consensus       135 ~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~  205 (258)
                      ..|.++++|++|++++|+++..-| .+..+++|++    |++++|+++ .+|..+....+|+.|++++|.+.
T Consensus        50 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~----L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          50 RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR----LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE----EECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             hhhccccccCcceeeccccCCcccccccccccccc----eeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            456777888888888888875545 6777888888    888888887 56665555557888888888774

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.5e-13  Score=111.60  Aligned_cols=174  Identities=17%  Similarity=0.141  Sum_probs=125.5

Q ss_pred             cEEEEEcCCCCCccc-CCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CC-CccCCC-CCcccCCCCCCCEE
Q 039201           71 RVTKLDLRSKSIGGF-LSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GG-YRLGGK-IPESLGQLGSINYL  146 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~-lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~-n~l~g~-ip~~~~~l~~L~~L  146 (258)
                      +++++|++++.+... +...+..+++|++|+++++.+.+..+..++++++|++|+ ++ +.++.. +..-..++++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            789999998877644 445678889999999999998877778888999999998 34 344422 22223568999999


Q ss_pred             Ecccc-cccc-ccc-cccC-CCCcceecceeecCCC--cccc-ccCccccCCCCCCeEecCCC-cCCccCCCCchhhhhh
Q 039201          147 ILAEN-NFSG-TLR-SIFN-ISSLEFQSSETEKSKN--RFTG-KLGIDFNSLINLARLNLGQK-NLGIGTTSDLDFITLL  218 (258)
Q Consensus       147 ~L~~n-~l~g-~~p-~~~~-l~~L~~l~l~L~l~~n--~~~g-~ip~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~~~~l  218 (258)
                      +++++ .++. .++ .+.. .++|+.    ++++++  .++. .+.....++++|++|++++| .+++.      .+..+
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~----L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~------~~~~l  196 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQ----LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND------CFQEF  196 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCE----EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG------GGGGG
T ss_pred             ccccccccccccchhhhcccccccch----hhhcccccccccccccccccccccccccccccccCCCch------hhhhh
Confidence            99985 4442 223 3333 467888    777754  3332 23444467889999999886 46654      45678


Q ss_pred             cCCCCCccc--cc-cccccccchhhcCCCCCCeEeccCC
Q 039201          219 RNCSKLKTL--QY-NQLTGTIPDTTGELRNLQAPDLSEN  254 (258)
Q Consensus       219 ~~l~~L~~L--~~-N~l~g~ip~~l~~l~~L~~L~Ls~N  254 (258)
                      .++++|++|  ++ +.+++.....++++++|+.|+++++
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            888888888  55 5788777778888999999999876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.8e-12  Score=100.35  Aligned_cols=176  Identities=13%  Similarity=0.050  Sum_probs=122.5

Q ss_pred             eeCCCCCcEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCC-cccCCCCCCcEEc-CCCccCCCCCc-ccCCC
Q 039201           64 TCSHRHPRVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIP-NEVGCLSRLETLI-GGYRLGGKIPE-SLGQL  140 (258)
Q Consensus        64 ~c~~~~~~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p-~~l~~l~~L~~L~-~~n~l~g~ip~-~~~~l  140 (258)
                      .|+...   +.++.++.+++ .+|+.+.  +++++|++++|.++ .+| ..|.++++|++|+ ++|.+...+|. .+.++
T Consensus         5 ~C~C~~---~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l   77 (242)
T d1xwdc1           5 ICHCSN---RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL   77 (242)
T ss_dssp             SEEECS---SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESC
T ss_pred             cCCCcC---CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccc
Confidence            455433   35667777777 6776553  58999999999998 455 4688999999999 77877766654 57889


Q ss_pred             CCCCEEEccc-cccccccc-cccCCCCcceecceeecCCCccccccC-ccccCCCCCCeEecCCCcCCccCCCCchhhhh
Q 039201          141 GSINYLILAE-NNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLG-IDFNSLINLARLNLGQKNLGIGTTSDLDFITL  217 (258)
Q Consensus       141 ~~L~~L~L~~-n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~  217 (258)
                      ++++++++.. |++....+ .+.++++|++    +++++|++...-+ ..+..++.+..+..+++.+...-      +..
T Consensus        78 ~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~----l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~------~~~  147 (242)
T d1xwdc1          78 PKLHEIRIEKANNLLYINPEAFQNLPNLQY----LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE------RNS  147 (242)
T ss_dssp             TTCCEEEEECCTTCCEECTTSEECCTTCCE----EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC------TTS
T ss_pred             cccccccccccccccccccccccccccccc----cccchhhhccccccccccccccccccccccccccccc------ccc
Confidence            9999999865 67776666 7889999999    9999999864322 22344556666666777766531      223


Q ss_pred             hcCCC-CCccc--cccccccccchhhcCCCCCCeE-eccCCcCC
Q 039201          218 LRNCS-KLKTL--QYNQLTGTIPDTTGELRNLQAP-DLSENNLN  257 (258)
Q Consensus       218 l~~l~-~L~~L--~~N~l~g~ip~~l~~l~~L~~L-~Ls~N~l~  257 (258)
                      +..++ .++.+  ++|+++ .++....+..+++.+ ++++|+++
T Consensus       148 ~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~  190 (242)
T d1xwdc1         148 FVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE  190 (242)
T ss_dssp             STTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCC
T ss_pred             cccccccceeeeccccccc-ccccccccchhhhccccccccccc
Confidence            33332 44444  788898 566666666666555 56777775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=2.1e-13  Score=107.77  Aligned_cols=129  Identities=22%  Similarity=0.217  Sum_probs=101.9

Q ss_pred             CCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccccCc
Q 039201          109 EIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGI  186 (258)
Q Consensus       109 ~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~  186 (258)
                      .+|..+..+++|++|+ ++|++. .++ .+.++++|++|++++|.++ .+| ....+++|++    +++++|+++. ++ 
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~----L~l~~N~i~~-l~-  109 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE----LWISYNQIAS-LS-  109 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCE----EECSEEECCC-HH-
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccc----cccccccccc-cc-
Confidence            4566788899999999 777776 565 4889999999999999997 566 4445678999    9999999984 44 


Q ss_pred             cccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh----------hcCCCCCCeEec
Q 039201          187 DFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT----------TGELRNLQAPDL  251 (258)
Q Consensus       187 ~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~----------l~~l~~L~~L~L  251 (258)
                      .+..+++|++|++++|.++..     .....++.+++|++|  ++|+++...+..          +..+++|+.||-
T Consensus       110 ~~~~l~~L~~L~L~~N~i~~~-----~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         110 GIEKLVNLRVLYMSNNKITNW-----GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCH-----HHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cccccccccccccccchhccc-----cccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            478899999999999999862     122568889999988  889887554432          577899999873

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.3e-10  Score=87.85  Aligned_cols=107  Identities=16%  Similarity=0.031  Sum_probs=76.6

Q ss_pred             CCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEccccc-cccccc-cccCCCCcceecceeecCCCccccccCccccCC
Q 039201          115 GCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAENN-FSGTLR-SIFNISSLEFQSSETEKSKNRFTGKLGIDFNSL  191 (258)
Q Consensus       115 ~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n~-l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l  191 (258)
                      +.+...+.++ .++++. .+|..+..+++|++|++++|+ ++..-+ .|.++++|+.    |++++|+++..-|..+..+
T Consensus         5 C~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~----L~Ls~N~l~~i~~~~f~~l   79 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN----LTIVKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             SCCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSE----EECCSSCCCEECTTGGGSC
T ss_pred             CCcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCc----ceeeccccCCccccccccc
Confidence            3444555666 444444 578888889999999997664 764334 7888999999    9999999987667778999


Q ss_pred             CCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccc
Q 039201          192 INLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT  233 (258)
Q Consensus       192 ~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~  233 (258)
                      ++|++|+|++|+++. +|      ...-....|++|  ++|.+.
T Consensus        80 ~~L~~L~Ls~N~l~~-l~------~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          80 PRLSRLNLSFNALES-LS------WKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCCEEECCSSCCSC-CC------STTTCSCCCCEEECCSSCCC
T ss_pred             ccccceeccCCCCcc-cC------hhhhccccccccccCCCccc
Confidence            999999999999985 33      222222245555  677664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.3e-12  Score=109.55  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=52.3

Q ss_pred             cEEEEEcCCCCCcc----cCCccCCCCCCCCEEEccCCCCcCC----CCcccC-CCCCCcEEc-CCCccCCC----CCcc
Q 039201           71 RVTKLDLRSKSIGG----FLSPFVGNPSFVRVIVLANNSYYGE----IPNEVG-CLSRLETLI-GGYRLGGK----IPES  136 (258)
Q Consensus        71 ~v~~l~l~~~~l~g----~lp~~~~~l~~L~~L~Ls~n~l~g~----~p~~l~-~l~~L~~L~-~~n~l~g~----ip~~  136 (258)
                      +++.++|++|+++.    .+...+...++|++|||++|.++..    +...+. ...+|++|+ ++|.+++.    ++..
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~  107 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  107 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccch
Confidence            45667777776652    2344566777888888888876421    122222 234678887 56666543    3455


Q ss_pred             cCCCCCCCEEEccccccc
Q 039201          137 LGQLGSINYLILAENNFS  154 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~  154 (258)
                      +..+++|++|++++|.++
T Consensus       108 l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTSCTTCCEEECCSSBCH
T ss_pred             hhccccccccccccccch
Confidence            677788888888887764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.4e-11  Score=100.91  Aligned_cols=159  Identities=25%  Similarity=0.244  Sum_probs=117.2

Q ss_pred             CCCCCCCCEEEccCCCCcCC-CCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcccc-cccc-ccc-cccCCC
Q 039201           90 VGNPSFVRVIVLANNSYYGE-IPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILAEN-NFSG-TLR-SIFNIS  164 (258)
Q Consensus        90 ~~~l~~L~~L~Ls~n~l~g~-~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~~n-~l~g-~~p-~~~~l~  164 (258)
                      ......|++||++++.+.+. ++..+.++++|++|+ .++.+++..+..++++++|++|+++++ .++. .+. -..+++
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            34567899999999988654 345567899999999 777788778888999999999999995 5552 233 345689


Q ss_pred             CcceecceeecCCC-cccc-ccCccccC-CCCCCeEecCCC--cCCccCCCCchhhhhhcCCCCCccc--cc-ccccccc
Q 039201          165 SLEFQSSETEKSKN-RFTG-KLGIDFNS-LINLARLNLGQK--NLGIGTTSDLDFITLLRNCSKLKTL--QY-NQLTGTI  236 (258)
Q Consensus       165 ~L~~l~l~L~l~~n-~~~g-~ip~~~~~-l~~L~~L~ls~N--~l~g~~p~~~~~~~~l~~l~~L~~L--~~-N~l~g~i  236 (258)
                      +|++    ++++++ .++. .+...+.. .++|+.|++++.  .++..     .+.....++++|++|  ++ ..+++..
T Consensus       122 ~L~~----L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~-----~l~~l~~~~~~L~~L~L~~~~~itd~~  192 (284)
T d2astb2         122 RLDE----LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-----DLSTLVRRCPNLVHLDLSDSVMLKNDC  192 (284)
T ss_dssp             TCCE----EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-----HHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred             hccc----cccccccccccccchhhhcccccccchhhhcccccccccc-----cccccccccccccccccccccCCCchh
Confidence            9999    888885 3432 23333444 468999999865  34432     134455678888888  55 5688888


Q ss_pred             chhhcCCCCCCeEeccCC-cCC
Q 039201          237 PDTTGELRNLQAPDLSEN-NLN  257 (258)
Q Consensus       237 p~~l~~l~~L~~L~Ls~N-~l~  257 (258)
                      +..++++++|++|+++++ .++
T Consensus       193 ~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         193 FQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             GGGGGGCTTCCEEECTTCTTCC
T ss_pred             hhhhcccCcCCEEECCCCCCCC
Confidence            889999999999999984 554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.02  E-value=2.7e-09  Score=89.53  Aligned_cols=134  Identities=22%  Similarity=0.300  Sum_probs=94.6

Q ss_pred             cEEEEEcCCCCCcccCCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEc-CCCccCCCCCcccCCCCCCCEEEcc
Q 039201           71 RVTKLDLRSKSIGGFLSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLI-GGYRLGGKIPESLGQLGSINYLILA  149 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~-~~n~l~g~ip~~~~~l~~L~~L~L~  149 (258)
                      ++++||+++++++ .+|+.   +++|++|++++|+++ .+|..+   .+|+.|+ ++|.++ .++. +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh-h--cccccccccc
Confidence            5789999999997 57763   568999999999998 888754   4677777 555554 3432 1  1469999999


Q ss_pred             ccccccccccccCCCCcceecceeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--
Q 039201          150 ENNFSGTLRSIFNISSLEFQSSETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--  227 (258)
Q Consensus       150 ~n~l~g~~p~~~~l~~L~~l~l~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--  227 (258)
                      +|.++ .+|.++++++|++    +++++|.+.. .|..   ...+..+.+..+.....        ..++.++.++.+  
T Consensus       107 ~n~l~-~lp~~~~l~~L~~----L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~~~--------~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         107 NNQLE-KLPELQNSSFLKI----IDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL--------PELQNLPFLTAIYA  169 (353)
T ss_dssp             SSCCS-SCCCCTTCTTCCE----EECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC--------CCCTTCTTCCEEEC
T ss_pred             ccccc-cccchhhhcccee----eccccccccc-cccc---cccccchhhcccccccc--------ccccccccceeccc
Confidence            99987 6786778999999    8888888763 3332   35567777766655432        334555555555  


Q ss_pred             cccccc
Q 039201          228 QYNQLT  233 (258)
Q Consensus       228 ~~N~l~  233 (258)
                      +.|.+.
T Consensus       170 ~~n~~~  175 (353)
T d1jl5a_         170 DNNSLK  175 (353)
T ss_dssp             CSSCCS
T ss_pred             cccccc
Confidence            556555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.01  E-value=1.9e-11  Score=103.87  Aligned_cols=181  Identities=19%  Similarity=0.263  Sum_probs=118.8

Q ss_pred             cEEEEEcCCCCCccc----CCccCCCCCCCCEEEccCCCCcCCCCc-------------ccCCCCCCcEEc-CCCccCCC
Q 039201           71 RVTKLDLRSKSIGGF----LSPFVGNPSFVRVIVLANNSYYGEIPN-------------EVGCLSRLETLI-GGYRLGGK  132 (258)
Q Consensus        71 ~v~~l~l~~~~l~g~----lp~~~~~l~~L~~L~Ls~n~l~g~~p~-------------~l~~l~~L~~L~-~~n~l~g~  132 (258)
                      +++.+++++|.++..    +...+...+.|++|++++|.+...-..             .....+.|+.++ +.|.+...
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~  173 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  173 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             CcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccc
Confidence            688888888877543    333455677888888888876421000             112456677776 44544321


Q ss_pred             ----CCcccCCCCCCCEEEccccccccc-----cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEe
Q 039201          133 ----IPESLGQLGSINYLILAENNFSGT-----LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLN  198 (258)
Q Consensus       133 ----ip~~~~~l~~L~~L~L~~n~l~g~-----~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~  198 (258)
                          +...+...+.|++|++++|+++..     +. .+...++|+.    |++++|.++..    +...+..+++|++|+
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~----L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV----LDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE----EECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcc----cccccccccccccccccccccccccchhhh
Confidence                223355678899999999998732     22 4667888999    89999988533    455677889999999


Q ss_pred             cCCCcCCccCCCCchhhhhhcC--CCCCccc--cccccccc----cchhh-cCCCCCCeEeccCCcCC
Q 039201          199 LGQKNLGIGTTSDLDFITLLRN--CSKLKTL--QYNQLTGT----IPDTT-GELRNLQAPDLSENNLN  257 (258)
Q Consensus       199 ls~N~l~g~~p~~~~~~~~l~~--l~~L~~L--~~N~l~g~----ip~~l-~~l~~L~~L~Ls~N~l~  257 (258)
                      +++|.+++.-..  .+...+..  ...|+.|  ++|+++..    +...+ .+.++|++|++++|++.
T Consensus       250 Ls~n~i~~~g~~--~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         250 LNDCLLSARGAA--AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCCCHHHHH--HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhcCccCchhhH--HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            999998764110  12223333  2456666  88888753    33344 25788999999999985

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.91  E-value=7.3e-11  Score=100.22  Aligned_cols=182  Identities=14%  Similarity=0.101  Sum_probs=116.1

Q ss_pred             CcEEEEEcCCCCCccc----------CCccCCCCCCCCEEEccCCCCcCC----CCcccCCCCCCcEEc-CCCccCCCCC
Q 039201           70 PRVTKLDLRSKSIGGF----------LSPFVGNPSFVRVIVLANNSYYGE----IPNEVGCLSRLETLI-GGYRLGGKIP  134 (258)
Q Consensus        70 ~~v~~l~l~~~~l~g~----------lp~~~~~l~~L~~L~Ls~n~l~g~----~p~~l~~l~~L~~L~-~~n~l~g~ip  134 (258)
                      ++++.++++++.....          +...+...++|++|++++|.+...    +...+...++|++|+ ++|.+...-.
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~  138 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  138 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence            3677777776543211          123455677888888888877653    333344667888887 4454421100


Q ss_pred             c-------------ccCCCCCCCEEEccccccccc----cc-cccCCCCcceecceeecCCCccccc-----cCccccCC
Q 039201          135 E-------------SLGQLGSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEKSKNRFTGK-----LGIDFNSL  191 (258)
Q Consensus       135 ~-------------~~~~l~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g~-----ip~~~~~l  191 (258)
                      .             .....+.|+.+++++|+++..    +. .+...+.|++    +++++|+++..     +...+...
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~----L~L~~n~i~~~g~~~~l~~~l~~~  214 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT----VKMVQNGIRPEGIEHLLLEGLAYC  214 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE----EECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             ccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc----cccccccccccccccchhhhhcch
Confidence            0             113466788888888877622    22 3456778888    88899988632     34456778


Q ss_pred             CCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccccccchh----hcC--CCCCCeEeccCCcCC
Q 039201          192 INLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDT----TGE--LRNLQAPDLSENNLN  257 (258)
Q Consensus       192 ~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~----l~~--l~~L~~L~Ls~N~l~  257 (258)
                      ++|+.|++++|.++..-.  -.+...+..++.|++|  ++|.+++.-...    +..  .+.|++|++++|+++
T Consensus       215 ~~L~~L~Ls~N~i~~~g~--~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGS--SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TTCCEEECCSSCCHHHHH--HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccc--ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            899999999998864210  0133567778888877  889887643333    333  367999999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.6e-09  Score=79.58  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=81.0

Q ss_pred             CCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCEEEccccccccc--cc-cccCCCCcceecc
Q 039201           95 FVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINYLILAENNFSGT--LR-SIFNISSLEFQSS  171 (258)
Q Consensus        95 ~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~L~L~~n~l~g~--~p-~~~~l~~L~~l~l  171 (258)
                      ..+.||+++....   + .+..+..+..++..+.+...++....++++|++|+|++|+++..  ++ .+..+++|++   
T Consensus        23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~---   95 (162)
T d1koha1          23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKI---   95 (162)
T ss_dssp             SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCC---
T ss_pred             hhCeeecccCCCC---c-hhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccc---
Confidence            3455666654322   2 23444444444433334434444445788999999999999853  33 4567899999   


Q ss_pred             eeecCCCccccccCccccCCCCCCeEecCCCcCCccCCCCch-hhhhhcCCCCCccccccccc
Q 039201          172 ETEKSKNRFTGKLGIDFNSLINLARLNLGQKNLGIGTTSDLD-FITLLRNCSKLKTLQYNQLT  233 (258)
Q Consensus       172 ~L~l~~n~~~g~ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~~~~l~~l~~L~~L~~N~l~  233 (258)
                       +++++|+++..-+-......+|+.+++++|.+.......-. ....+..+++|+.|++..+.
T Consensus        96 -L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~v~  157 (162)
T d1koha1          96 -LNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP  157 (162)
T ss_dssp             -CCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEECC
T ss_pred             -cccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCCCc
Confidence             89999998743222333455789999999998765332111 12346667888888777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.3e-08  Score=86.38  Aligned_cols=181  Identities=16%  Similarity=0.087  Sum_probs=102.8

Q ss_pred             cEEEEEcCCCCCcc-----cCCccCCCCCCCCEEEccCCCCcCC----CCcccCCCCCCcEEc-CCCccCCCCCcc----
Q 039201           71 RVTKLDLRSKSIGG-----FLSPFVGNPSFVRVIVLANNSYYGE----IPNEVGCLSRLETLI-GGYRLGGKIPES----  136 (258)
Q Consensus        71 ~v~~l~l~~~~l~g-----~lp~~~~~l~~L~~L~Ls~n~l~g~----~p~~l~~l~~L~~L~-~~n~l~g~ip~~----  136 (258)
                      .++.+++.++.+..     .++........++.+++++|.+...    ....+...+.++.++ +.|.+++.....    
T Consensus       227 ~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~  306 (460)
T d1z7xw1         227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  306 (460)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             cccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            45666666665432     1223445566777788887766532    222234566667666 445443221111    


Q ss_pred             c-CCCCCCCEEEccccccccccc-c----ccCCCCcceecceeecCCCccccc----cCcccc-CCCCCCeEecCCCcCC
Q 039201          137 L-GQLGSINYLILAENNFSGTLR-S----IFNISSLEFQSSETEKSKNRFTGK----LGIDFN-SLINLARLNLGQKNLG  205 (258)
Q Consensus       137 ~-~~l~~L~~L~L~~n~l~g~~p-~----~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~-~l~~L~~L~ls~N~l~  205 (258)
                      + .....|+++++++|.++..-. .    +...++|++    |++++|+++..    ++..+. ..+.|++|++++|.++
T Consensus       307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~----L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~  382 (460)
T d1z7xw1         307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE----LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  382 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE----EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ccccccccccccccccchhhhhhhhcccccccccchhh----hheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence            1 234568888888887764322 2    234567788    77888877542    333333 3456888888888876


Q ss_pred             ccCCCCchhhhhhcCCCCCccc--cccccccccchhh----c-CCCCCCeEeccCCcCC
Q 039201          206 IGTTSDLDFITLLRNCSKLKTL--QYNQLTGTIPDTT----G-ELRNLQAPDLSENNLN  257 (258)
Q Consensus       206 g~~p~~~~~~~~l~~l~~L~~L--~~N~l~g~ip~~l----~-~l~~L~~L~Ls~N~l~  257 (258)
                      ..-.  ..+...+..+++|++|  ++|+++......+    . ...+|++|++..|++.
T Consensus       383 ~~~~--~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         383 DSSC--SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHH--HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hHHH--HHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            4200  0133455666777777  7777775433333    2 2346888888887764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5.4e-07  Score=67.76  Aligned_cols=103  Identities=25%  Similarity=0.143  Sum_probs=70.5

Q ss_pred             cCCCCCCCEEEccccccccccc-cccCCCCcceecceeecCCCccccc--cCccccCCCCCCeEecCCCcCCccCCCCch
Q 039201          137 LGQLGSINYLILAENNFSGTLR-SIFNISSLEFQSSETEKSKNRFTGK--LGIDFNSLINLARLNLGQKNLGIGTTSDLD  213 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~~p-~~~~l~~L~~l~l~L~l~~n~~~g~--ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~  213 (258)
                      +..+..+..++...+.. ..++ ....+++|++    |++++|+++..  ++..+..+++|+.|++++|.++..-     
T Consensus        38 l~~~~~~~~l~~~~~~~-~~l~~~~~~~~~L~~----L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~-----  107 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMA-ATLRIIEENIPELLS----LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-----  107 (162)
T ss_dssp             TTTTTCCCCTTSHHHHH-HHHHHHHHHCTTCCC----CCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGG-----
T ss_pred             hhhccchhhcchhhhHh-hhhHHHHHhCCCCCE----eeCCCccccCCchhHHHHhhCCcccccccccCccccch-----
Confidence            44555555555555543 3445 4457899999    99999999843  3455778999999999999998631     


Q ss_pred             hhhhhcCCCCCccc--cccccccccch-------hhcCCCCCCeEe
Q 039201          214 FITLLRNCSKLKTL--QYNQLTGTIPD-------TTGELRNLQAPD  250 (258)
Q Consensus       214 ~~~~l~~l~~L~~L--~~N~l~g~ip~-------~l~~l~~L~~L~  250 (258)
                      ....++ ...|+.+  ++|.+++....       .+..+|+|+.||
T Consensus       108 ~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         108 ELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             GHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hhhhhh-ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            112233 3346665  89999865543       256789999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.09  E-value=0.0001  Score=55.07  Aligned_cols=89  Identities=11%  Similarity=0.004  Sum_probs=39.0

Q ss_pred             ccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCccCCCCchhhhhhcCCCCCccc--cccccc
Q 039201          160 IFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIGTTSDLDFITLLRNCSKLKTL--QYNQLT  233 (258)
Q Consensus       160 ~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~l~~l~~L~~L--~~N~l~  233 (258)
                      +...+.|++    |++++|.+...    +...+...+.|++|++++|.++..--  ..+...+...+.|++|  ++|.+.
T Consensus        40 L~~n~~L~~----L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~--~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          40 ACNSKHIEK----FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL--ARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTCSCCCE----EECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH--HHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HhhCCccce----eeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH--HHHHHHHHhCCcCCEEECCCCcCC
Confidence            334455555    55555555321    11223334555555555555543200  0022234444445544  333222


Q ss_pred             ---c----ccchhhcCCCCCCeEeccCC
Q 039201          234 ---G----TIPDTTGELRNLQAPDLSEN  254 (258)
Q Consensus       234 ---g----~ip~~l~~l~~L~~L~Ls~N  254 (258)
                         .    .+...+..-+.|+.|+++.+
T Consensus       114 ~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         114 VLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence               0    12333444566666666554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.07  E-value=8.6e-05  Score=55.49  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=35.6

Q ss_pred             cCCCCCCCEEEccccccccc----cc-cccCCCCcceecceeecCCCcccc-------ccCccccCCCCCCeEecCCCc
Q 039201          137 LGQLGSINYLILAENNFSGT----LR-SIFNISSLEFQSSETEKSKNRFTG-------KLGIDFNSLINLARLNLGQKN  203 (258)
Q Consensus       137 ~~~l~~L~~L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g-------~ip~~~~~l~~L~~L~ls~N~  203 (258)
                      +...+.|++|++++|.++..    +- .+...++|++    |++++|....       .+...+..-+.|+.|+++.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~----L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVE----FKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSE----EECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCE----EECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            33456677777777777631    11 3455566777    6666665331       133344455667777765553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.94  E-value=0.00014  Score=54.11  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=68.3

Q ss_pred             CCCCCCCEEEccc-ccccc--c--cc-cccCCCCcceecceeecCCCccccc----cCccccCCCCCCeEecCCCcCCcc
Q 039201          138 GQLGSINYLILAE-NNFSG--T--LR-SIFNISSLEFQSSETEKSKNRFTGK----LGIDFNSLINLARLNLGQKNLGIG  207 (258)
Q Consensus       138 ~~l~~L~~L~L~~-n~l~g--~--~p-~~~~l~~L~~l~l~L~l~~n~~~g~----ip~~~~~l~~L~~L~ls~N~l~g~  207 (258)
                      .+.++|++|++++ +.++.  .  +- .+...++|++    |++++|.++..    +-..+...+.++.+++++|.++..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~----L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKK----FSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCE----EECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCe----eeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            4567788888876 44542  1  11 3456677888    77788877543    223345567788888888777543


Q ss_pred             CCCCchhhhhhcCCCCCccc----ccccccc----ccchhhcCCCCCCeEeccCCc
Q 039201          208 TTSDLDFITLLRNCSKLKTL----QYNQLTG----TIPDTTGELRNLQAPDLSENN  255 (258)
Q Consensus       208 ~p~~~~~~~~l~~l~~L~~L----~~N~l~g----~ip~~l~~l~~L~~L~Ls~N~  255 (258)
                      .-  ..+...+...+.|+.+    +.|.+..    .+...+...++|+.|+++.++
T Consensus        90 g~--~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GI--LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HH--HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hH--HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            10  0133456666666543    5566643    344556677888899887765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.50  E-value=0.00022  Score=52.94  Aligned_cols=113  Identities=12%  Similarity=0.130  Sum_probs=60.1

Q ss_pred             cEEEEEcCCC-CCccc----CCccCCCCCCCCEEEccCCCCcCCCCcccCCCCCCcEEcCCCccCCCCCcccCCCCCCCE
Q 039201           71 RVTKLDLRSK-SIGGF----LSPFVGNPSFVRVIVLANNSYYGEIPNEVGCLSRLETLIGGYRLGGKIPESLGQLGSINY  145 (258)
Q Consensus        71 ~v~~l~l~~~-~l~g~----lp~~~~~l~~L~~L~Ls~n~l~g~~p~~l~~l~~L~~L~~~n~l~g~ip~~~~~l~~L~~  145 (258)
                      .+++++++++ .++..    +-..+...++|++|++++|.++..--..                   +-..+...++++.
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~-------------------L~~~l~~~~~l~~   78 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA-------------------LAEMLKVNNTLKS   78 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH-------------------HHHHHHHCSSCCE
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHH-------------------HHHHHhhcccchh
Confidence            5666666652 34321    2234455666666666666554211110                   1122344566777


Q ss_pred             EEccccccccc----cc-cccCCCCcceecceeecCCCcccc----ccCccccCCCCCCeEecCCCcC
Q 039201          146 LILAENNFSGT----LR-SIFNISSLEFQSSETEKSKNRFTG----KLGIDFNSLINLARLNLGQKNL  204 (258)
Q Consensus       146 L~L~~n~l~g~----~p-~~~~l~~L~~l~l~L~l~~n~~~g----~ip~~~~~l~~L~~L~ls~N~l  204 (258)
                      +++++|.++..    +- .+...++|+.++  ++++.|.+..    .+...+...++|+.|+++.+..
T Consensus        79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~--L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          79 LNVESNFISGSGILALVEALQSNTSLIELR--IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEE--CCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hhhccccccchhHHHHHHHHHhCccccEEe--eccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            77777776531    12 455666777633  3445666642    2444556777888888766544