Citrus Sinensis ID: 039206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----
Protein Sequence
ALRRHSAVFDFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSDVASEINPLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHcccEEHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
alrrhsavfdfayLVTDIAILSSGLVLVELRVAELKKETLrrsfdlpheqlGLFTAQWIQELFDLTMKSLekqssssidVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDIlqlhpkrsaapenltssGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAmsgfypphsregyvefDVSIIRRTCILLLEQLsslapeinSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHrqtpklrrslgfadevpvmhheqLSDVASEINPLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLgafrlapafdgneLESLLAIVAEdrqtpklcrslgfadkvpgkLSVIEIQMYWLQLVLFIK
Flexible Loop (DISEMBL)
alrrhsavfdfaylvTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLekqssssidvdmKIRLLDERAkeienkeselvlveKKIKDCNFELACKekelgfvrKRIGVCnselqskedelnlvknsaekwpkrlnlkkekqkrlesldgevresekelVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSlqstvrlreneleckekelelkereFCRIQERIEESSQELLLKENQLKSVLACIEDCskedqvkekelisvgksirqfeervrefelrerefdslrkavedssknleLRQKKlsdilqlhpkrsaapenltssGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSdvaseinplVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPKLCRslgfadkvpgklSVIEIQMYWLQLVLFIK
Low Complexity Region (SEG)
ALRRHSAVFDFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVrlreneleckekelelkereFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIrqfeervrefelrerefDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSDVASEINPLVRDEAMKVAGEWKEKMRAAVENSlevlgllhllgafrlAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK
Disordered region (IsUnstruct)
******AVFDFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTM****************I*L*************ELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNS********************************************************IRAMIEACTEKLEAIEESYD************LELTQTFMKDLLVKLRLYEDNLQSLQSTVRL*****************EFCRI**********LLLKENQLKSVLACIEDC******************************************************************************NLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSDVASEINPLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFI*
Disordered Region (DISOPRED)
******A**DFAYLVTD***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LLVLDAMS*******************RRTCILLLEQLSS*********QGEALKVAVEWKKNMED*VKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSDVASEINPLVRDEAMKVAGEWKEKMR**VENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK
Disordered Region (DISEMBL)
ALRRHSAVFDFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSDVASEINPLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK
Disordered Region (DISPRO)
*LRRHSAVFDFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSDVASEINPLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ALRRHSAVFDFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLxxxxxxxxxxxxxxxxxxxxxIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLxxxxxxxxxxxxxxxxxxxxxxxxxxxxKASIRAMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMHHEQLSDVASEINPLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	645
224130844	1006	predicted protein [Populus trichocarpa]	0.668	0.428	0.314	1e-41
356541044	885	PREDICTED: uncharacterized protein LOC10	0.843	0.614	0.277	1e-40
147767145	1701	hypothetical protein VITISV_031269 [Viti	0.337	0.128	0.416	1e-38
255542460	716	Protein FRIGIDA, putative [Ricinus commu	0.629	0.567	0.307	3e-38
224130856	1033	predicted protein [Populus trichocarpa]	0.488	0.304	0.319	3e-35
224130848	954	predicted protein [Populus trichocarpa]	0.477	0.322	0.346	9e-33
224130872	168	predicted protein [Populus trichocarpa]	0.240	0.922	0.477	2e-30
297813019	1191	predicted protein [Arabidopsis lyrata su	0.776	0.420	0.273	7e-28
449524874	888	PREDICTED: uncharacterized LOC101218416,	0.665	0.483	0.260	7e-27
449466953	1145	PREDICTED: uncharacterized protein LOC10	0.665	0.374	0.260	1e-26

>gi|224130844|ref|XP_002328390.1| predicted protein [Populus trichocarpa] gi|222838105|gb|EEE76470.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 186/591 (31%), Positives = 281/591 (47%), Gaps = 160/591 (27%)

Query: 87  LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE------ 140
           ++ER KE+E  E E+  V K I +C+ +L  K+KEL  VR  I  CN EL SKE      
Sbjct: 182 VEERLKELEFNEKEVERVRKLIANCDRDLEFKQKELRNVRNLINDCNKELSSKEMDLKML 241

Query: 141 ------------DELNLVKNSAEKWPKRLNLKKEK--------QKRLESLDGEVRE---- 176
                       DEL+ +K S E   K L+LKK++        Q+ ++ LD E RE    
Sbjct: 242 QVRSSAKFVSNKDELDGIKKSIE-CSKELDLKKKELDKTKELIQECVKELDSEERELSLI 300

Query: 177 ------SEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVK-------AKLESEKREL 223
                 S K+    +    SI  +I+  TE+LEA E+ +DAVK       A+L+S++ EL
Sbjct: 301 KKSIEESSKDFDSRQNHLGSISVLIDEYTEELEAKEKQHDAVKKSISVRSAELKSKETEL 360

Query: 224 ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE--------------KELELKE 269
              +  +K+L  KL+  E+ L S +  V+    ++E KE              KELE +E
Sbjct: 361 RSIEDSIKELSAKLQQKEEKLDSARQHVKHCARKIESKEEELNKIKGRMNTYVKELESRE 420

Query: 270 REFCRIQERIEESSQELLLKENQLKSVLACIEDC---------------------SKEDQ 308
           REF  IQ  IE  S+EL  KE QLKSV   I +C                     S+E Q
Sbjct: 421 REFNAIQLSIEYRSEELKGKERQLKSVQLSIGECEKELKAMKEQKNSIQKLILECSEELQ 480

Query: 309 VKEKELISVGKSIR---------------------------------------------- 322
            KEK LI   +S+R                                              
Sbjct: 481 SKEKNLILARESLRECCDDLELKKVQLDSIQRSSHESNKKSEEKEKYLNSLEKTLDERLK 540

Query: 323 -------QFEERVREFELREREFDSLRKAVEDSSKNLELRQKKL-SDILQLH-------- 366
                  QFEERV E EL+E++   ++++VE   K +EL++++L S+IL  H        
Sbjct: 541 NLGVKEMQFEERVNEIELKEQQLRLMQQSVEKYRKEVELKEQQLGSNILSSHVRVDQTEN 600

Query: 367 ---PKRSAAPE---NLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMS 420
              PK +++     N T+S R+  ++ N  +  HD++   V      +A+PA +VLD + 
Sbjct: 601 VRNPKHASSSAFQFNATTSERSSPVV-NVCVSEHDLMHHGV------SAEPAKVVLDIVQ 653

Query: 421 GFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTV 480
            +     ++G   FD S+  R  ++LLEQL  ++P+I+ QV+  A K+AV W+KN+    
Sbjct: 654 NW-----KKGVTGFDASV-NRDNVVLLEQLMKVSPKISPQVKEAATKLAVLWEKNIRLET 707

Query: 481 KDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFAD 531
           +DS+ VL FL  LA Y L S F  + +  L+ ++A  +Q P++ ++LGFAD
Sbjct: 708 EDSMEVLMFLLFLAVYGLVSCFSRDRILRLVRVIAQQKQAPEIFKALGFAD 758

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541044|ref|XP_003538993.1| PREDICTED: uncharacterized protein LOC100783311 [Glycine max]

 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 183/660 (27%), Positives = 317/660 (48%), Gaps = 116/660 (17%)

Query: 83  KIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV-------RKRIGVCNSE 135
           K R + +  +E+  KE+   L+   I++   EL  K+ E   V       + ++   N +
Sbjct: 86  KQRGIQDSDRELAEKEAHRSLIADMIREREQELRAKDAEFQQVLDEGMALKNKVAQLNDD 145

Query: 136 LQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMI 195
           L++K++EL++V  S       +N     ++  E+    +R   K+L+    +  S +   
Sbjct: 146 LKTKKEELDVVTRSL------IN-----EQATETTIKSMRARIKQLLRQPYESESKQKQF 194

Query: 196 EACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQS---TVR 252
           E   ++LE+ ++ Y+    +L+S++++ E     +K+L +  +LYE  ++ L S      
Sbjct: 195 EGQAKELESKQKHYERQVKELQSKQKQYE---GRVKELKLNEKLYERKVRELGSREKQYE 251

Query: 253 LRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEK 312
            R  ELE  EK+ E + +E     ++ E+  +EL+  E Q   V + IE  SKE Q+ E 
Sbjct: 252 TRMKELESNEKQCETRMKEVESNAKQYEKRVKELVSHERQY--VKSVIELNSKEKQI-EG 308

Query: 313 ELISVGKSIRQFEERVREFELRE-------REFDSLRKAVEDSSKNLE------------ 353
           +++ +     Q+E  V+E E +E       +E +S+ K +++  K+LE            
Sbjct: 309 QMVDLESKKNQYEGLVKELESKEARCKVLLKELESIEKKIQEQMKDLEFKKNQCESSRKS 368

Query: 354 -----LRQKKLSDILQLHPKRSAA---PENLTSS--GRNLQILLNQHLRRHDVIFCNVFD 403
                L ++K +D        SA+    +N T +   +NL + +N  L +++++   V D
Sbjct: 369 FEEEKLSKQKSNDQQHFTNANSASLFNQQNFTGADNSKNLPLFIN-LLEKYELMCSQVSD 427

Query: 404 TIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQG 463
            ++  A+P  LVLD + GFY  HSR+G +E+D SI RR C LL+++L   +P I  +V+ 
Sbjct: 428 ALQTFANPTKLVLDTIKGFYTSHSRQGLIEYDASISRRICNLLMDELKKSSPVIGIRVKQ 487

Query: 464 EALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQT--- 520
           EA+K+A +WK N+    KD L VL F   +A Y++ S+FD  EL  LLDI+A   QT   
Sbjct: 488 EAIKLATDWKANLVAGDKDCLEVLDFFKFVATYEIGSSFDAIELQRLLDIIALQYQTLQA 547

Query: 521 -------------PKL-RRSLGF---------------ADE---------VPVMHHEQLS 542
                        P +  R+L F               +D          VP+   +Q S
Sbjct: 548 IGKIKEPSDNQSSPTIDGRNLHFPSIKHINESVNLHTSSDPAKLVLDIILVPIASEKQGS 607

Query: 543 D------------------VASEINPLVRDEAMKVAGEWKEKMRAAVENSLEVLGLLHLL 584
           +                  ++  + P VR+EA+K+A   K  +R + ENSL +LG L LL
Sbjct: 608 EGAIIIDESHILLLEQLMRISPRVKPRVREEALKIAFALKANIRESAENSLTILGFLLLL 667

Query: 585 GAFRLAPAFDGNELESLLAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLVLFI 644
            A+ L   F  +EL   L   A+ +Q  +L R+LGF DK+   +  + ++   ++ V FI
Sbjct: 668 SAYGLVSYFRKDELFKQLESAAQHKQAVELFRTLGFVDKIFDFVRNLIMKQQHIEAVRFI 727

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767145|emb|CAN75646.1| hypothetical protein VITISV_031269 [Vitis vinifera]

 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 304 SKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDIL 363
           SKE Q++  E+          + R +E EL+E + +  R  V    K+  L    +++ +
Sbjct: 65  SKEIQLRSLEI--------ALDRRAKELELKEWQLN--RPIVPSGVKSEPLEDVPVNNGI 114

Query: 364 QLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFY 423
                 +     +T  GRNLQ+ LN++   H  +   VF  +R +ADPA LVLDAM GFY
Sbjct: 115 DRFSSNANLRFCVTMDGRNLQLFLNENADNHGRMGNEVFAALRMSADPAKLVLDAMEGFY 174

Query: 424 PPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDS 483
           PPH + G VEF+ +++RR+C+LLLEQL+ + P I  QV+ EA ++A EWK  M   V DS
Sbjct: 175 PPHLKNGVVEFEGAVVRRSCVLLLEQLTRVGPPIRPQVREEAARLAHEWKAKMGVEVGDS 234

Query: 484 LVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFAD 531
           L VLGFL LL AY+L S FD NE+  L + V  HRQ  +L R+LG  D
Sbjct: 235 LEVLGFLWLLGAYRLTSDFDKNEILKLFENVVQHRQANELARALGLTD 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542460|ref|XP_002512293.1| Protein FRIGIDA, putative [Ricinus communis] gi|223548254|gb|EEF49745.1| Protein FRIGIDA, putative [Ricinus communis]

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 158/514 (30%), Positives = 254/514 (49%), Gaps = 108/514 (21%)

Query: 26  VLVELRVAELKKETLRRSFDLPHEQLG---LFTAQW--IQELFDLTMKSLEKQSSSSIDV 80
           +  EL++ ELKK++ RR+ D  H++       T QW  I++ FD T  S          +
Sbjct: 7   ISTELQLNELKKQSFRRTLDQLHDRASSILSLTLQWKHIEDQFDSTHNS----------I 56

Query: 81  DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE 140
           D+++  L    K IE K  E+    KK          +EK+L  V++ + +  SE++ +E
Sbjct: 57  DVRVEELHSIHKAIEQKLDEV----KK----------REKDLELVQEAVKLRFSEVEERE 102

Query: 141 DELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTE 200
            E  L++            KKE   R   ++  + +S KEL        S+R  IE   +
Sbjct: 103 KEFALIQ------------KKELHDRKREIEW-IEKSGKEL-------DSVRVEIE---D 139

Query: 201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELEC 260
           KL A++E  +                         +L L+   ++     VRL  ++L+ 
Sbjct: 140 KLRAVDEVDN-------------------------RLTLFNHCIEEKADQVRLSVSKLKL 174

Query: 261 KEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKS 320
           KEKEL  K+      ++++EE  + L LK+ ++           KE ++KEK+L      
Sbjct: 175 KEKELAFKDENLKEKEKKLEEHCKVLRLKDEEIHKKF-------KEVELKEKQL------ 221

Query: 321 IRQFEERVREFELREREFDSLRKAVEDSSKNLELR-QKKLSDILQLHPKRSAAPENLTSS 379
                      E R REF+ L++  + S+ N  ++ + +++      P  ++    +   
Sbjct: 222 -----------EQRYREFEELKEKQKPSNNNTCVKIEPQITT-----PSDASLYFTVNMD 265

Query: 380 GRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSII 439
           G+ LQI LN+     D I   VF  +  ++DPA  VLDAM GFYPPH R+G +EF   ++
Sbjct: 266 GKALQIFLNER-EYSDSIRDEVFIALGFSSDPAKFVLDAMQGFYPPHLRKGDMEFKAEVV 324

Query: 440 RRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLA 499
           RR+CILLLEQL  ++PEI+  V+ EA+K++  W   M+   +  L VLGFL LLA+Y LA
Sbjct: 325 RRSCILLLEQLMKISPEISPLVRNEAIKLSFSWMTKMKIDAEHPLEVLGFLQLLASYGLA 384

Query: 500 SAFDGNELASLLDIVANHRQTPKLRRSLGFADEV 533
           S FD +EL + L++V  H  +P L  +LGFAD++
Sbjct: 385 STFDADELLTQLEVVVQHSLSPGLFHALGFADKI 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130856|ref|XP_002328393.1| predicted protein [Populus trichocarpa] gi|222838108|gb|EEE76473.1| predicted protein [Populus trichocarpa]

 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 193/382 (50%), Gaps = 67/382 (17%)

Query: 215 KLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCR 274
           ++E   RE+E  +  +++L  ++R+ +D  +  +  V L+  E+E + KE+  K+R   +
Sbjct: 316 RVEKRFREVEEKERRVRELFKEVRVKDDEFRERRKGVELKGREVEERIKEIGFKDR---K 372

Query: 275 IQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELI--SVGK-------SIRQFE 325
           + ER++E   +    E +LK V   ++    E++VKE  L+  +VGK       + R+ E
Sbjct: 373 VGERLKEVGLKDRKAEERLKEV--GLKGREVEERVKEIALMEKNVGKRSEEVELNRRKLE 430

Query: 326 ERVREFELREREFDSLRKAVEDSS------------------------------------ 349
           E  RE EL+ RE + + K VE                                       
Sbjct: 431 EGFRELELKSREVEEIIKGVELKEKELEERCRGFDLKGKQIEEVQLKEKELEERLREVEM 490

Query: 350 ---------KNLELRQKKLSDILQLHPKRSAAPENLTSS--------GRNLQILLNQHLR 392
                    K  EL++K+++D      K      ++ ++        G+ LQILLN+  +
Sbjct: 491 ENKKCLERIKEFELKEKQVADACNARVKSETVDYSMDANLHFSVKMDGKALQILLNKRCK 550

Query: 393 RHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSS 452
             + +   V   +  ++DPA LVLDAM GFYPPH REG VEF   +++R+C LLLEQL+ 
Sbjct: 551 HDEKMKNEVSIALGLSSDPAKLVLDAMEGFYPPHLREGDVEFKEVVVKRSCNLLLEQLTK 610

Query: 453 LAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLD 512
           ++P I   V+ EA K+A  W   M    + +L V+GF +LLAAY LASAFD +EL S L 
Sbjct: 611 ISPTIKPHVRKEATKLAFLWMTKMTVDDQHNLDVMGFFYLLAAYGLASAFDSDELISRLV 670

Query: 513 IVANHRQTPKLRRSLGFADEVP 534
           I+A +RQ P+  R L   D++P
Sbjct: 671 IIARNRQIPEFLRVLELGDKIP 692

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130848|ref|XP_002328391.1| predicted protein [Populus trichocarpa] gi|222838106|gb|EEE76471.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 182/332 (54%), Gaps = 24/332 (7%)

Query: 225 LTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQ 284
           L +   KD +V+ RL E  L+  +   RL+E  L  K +E+E + +E   +++ + + S+
Sbjct: 293 LKEVGWKDRMVEERLKEVGLKDRKVEERLKEVGL--KGREVEERVKEIALMEKNVGKRSE 350

Query: 285 ELLLKENQLKSVLACIEDCSKEDQ-------VKEKELIS-------VGKSIRQFEERVRE 330
           E+ L   +L+     +E  S+E +       +KEK L          GK I + + + +E
Sbjct: 351 EVELNRRKLEEGFRKLELKSREVEEIIEGVELKEKILEERCRRFDFKGKQIEEVQLKEKE 410

Query: 331 FELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSS--------GRN 382
            E + RE +   K   +  K  EL++K+++D      K      ++ ++        G+ 
Sbjct: 411 LEEKLREVEMENKKCLERIKEFELKEKQVADACNARVKSETVDYSMDANLHFSVKMDGKA 470

Query: 383 LQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRT 442
           LQILLN+  +  + +   V   +  ++DPA LVLDAM GF+PPH REG VEF   +++R+
Sbjct: 471 LQILLNKRCKHDEKMKNEVSIALGLSSDPAKLVLDAMEGFHPPHLREGDVEFKEVVVKRS 530

Query: 443 CILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAF 502
           C LLLEQL+ ++P I   V+ EA K+A  W   M    + +L VLGF +LLAAY LASAF
Sbjct: 531 CNLLLEQLTKISPTIKPHVRKEATKLAFLWMIMMTVDGQHNLDVLGFFNLLAAYGLASAF 590

Query: 503 DGNELASLLDIVANHRQTPKLRRSLGFADEVP 534
           D +EL S L I+A ++QTP+  R L   D++P
Sbjct: 591 DSDELISRLVIIARNKQTPEFLRVLELGDKIP 622

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130872|ref|XP_002328397.1| predicted protein [Populus trichocarpa] gi|222838112|gb|EEE76477.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 100/155 (64%)

Query: 380 GRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSII 439
           G+ LQILLN+  +  + +   V   +  ++DPA LVLDAM GFYPPH REG VEF   ++
Sbjct: 3   GKALQILLNKRCKHDEKMKNEVSIALGLSSDPAKLVLDAMEGFYPPHLREGDVEFKEVVV 62

Query: 440 RRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLA 499
           +R+C LLLEQL  ++P I   V+ EA K+A  W   M      ++ VLGF +LLAAY LA
Sbjct: 63  KRSCNLLLEQLMKISPTIKPHVRKEATKLAFLWMTKMTVDGFHNMDVLGFFYLLAAYGLA 122

Query: 500 SAFDGNELASLLDIVANHRQTPKLRRSLGFADEVP 534
           SAFD +EL S L I+A ++QTP+  R L   D++P
Sbjct: 123 SAFDSDELISRLVIIARNKQTPEFFRVLELGDKIP 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813019|ref|XP_002874393.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320230|gb|EFH50652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 153/559 (27%), Positives = 267/559 (47%), Gaps = 58/559 (10%)

Query: 17  DIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSS 76
           +I I +  L LV  ++AE +K    RS +L   Q  +       E  D+ ++    + S+
Sbjct: 264 EIEIKTKDLTLVMDKIAECEKLFETRSSELIKTQCEVELKGKQLEQMDIDLERRRGEVSA 323

Query: 77  SID-VDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSE 135
            ++ +D       E A+EI+ K  EL  V  KI +   +L   E++L   +K +   +SE
Sbjct: 324 EMEHLDKSQTHSRELAQEIKRKRKELTAVLDKIAEYGKQLESVEQQLASQQKLLETRSSE 383

Query: 136 LQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMI 195
           L SK+ EL+ +                      SL+ E+RE+ K++     +   I  +I
Sbjct: 384 LVSKKKELDGLSLDL--------------DLANSLNNEMRETCKQIKSKGRELEEIERLI 429

Query: 196 EACTEKLEAIEESYDAVKAKLES-EKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLR 254
           +  +  +E+I+   +    +L S E+R  E+T+   K L  ++   E+ +Q L     ++
Sbjct: 430 QERSGHIESIKLLLEEHSEELASKEERHNEITEAIRK-LSSEIVSKEETIQQLSEKQLVK 488

Query: 255 ENELECKEKELE-------LKEREFCRIQERIEESSQELLLKENQLKSV---LACIEDCS 304
           + +L+  EK LE       +KE+E   +++   E  Q   +KE +LKS+   +  I+D  
Sbjct: 489 QRKLDSTEKRLENTTAEFVIKEKELGSVKDTYRECLQNWEIKEKELKSLQEEIKKIQDSL 548

Query: 305 KEDQVKEKELISVGKSIRQFEE-------RVR----EFELREREFDSLRKAVEDSS---- 349
           K+ Q KE E + +  S+ + E+       R+R    + EL+E++ D+  + ++       
Sbjct: 549 KDFQSKEAEQVKLKASLMEREKELGLKEKRIRARSEKIELKEKKLDAREERIDKKDEQLK 608

Query: 350 ----------KNLELRQKKLSDILQLH-PKRSA--APENLTSSGRNLQILLNQHLRRHDV 396
                     K+ EL  KKL+   Q + P +      +      + LQ+LL  HL++ D 
Sbjct: 609 STELKLAKCVKDYELNAKKLASFCQQNNPDQQVDLVRDASVCDEKTLQLLLRGHLKKCDQ 668

Query: 397 IFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPE 456
           +  +V   ++ ++DPA LVLD + G    H R    + D   +RR+ I LLE L +++ E
Sbjct: 669 LHLDVLGALKASSDPAKLVLDTIQGL---HERMAVTKLDPDSVRRSSICLLECLMNMSQE 725

Query: 457 INSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVAN 516
             ++VQ EA+K A EWK       ++ + VLGFLH LAA+ LA  FD +++ +L D    
Sbjct: 726 PKTEVQVEAIKSATEWKNTTLVKAENPVEVLGFLHFLAAFSLAYTFDADKVQNLFDAAFL 785

Query: 517 HRQTPKLRRSLGFADEVPV 535
            +  P L  +LG +   PV
Sbjct: 786 RQYAPSLCEALGVSSLAPV 804

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524874|ref|XP_004169446.1| PREDICTED: uncharacterized LOC101218416, partial [Cucumis sativus]

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 221/446 (49%), Gaps = 17/446 (3%)

Query: 97  KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKR 156
           KE  L  +EK IK    EL  KE+E   +  ++G  + +L SKE EL  +K+  ++  K 
Sbjct: 257 KEKRLDKIEKTIKVRTEELDLKEQEFDVMWSKLGALSEDLLSKESELESIKSCIKEHSKE 316

Query: 157 LNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKL 216
           L+++   +K+L+     +R+ +  ++++    ++I   I  C+++ E  E  + ++K  +
Sbjct: 317 LDVQ---EKQLDGTQQSIRDCQNAVMMLTNYVSTIEKAIIECSKEWELEENHHHSLKETV 373

Query: 217 ESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ 276
           +    +          + + +    + L+S +         +E + K LE  E  F R  
Sbjct: 374 DGNSNDFSSVVEQHGSISLTVDKCLEGLKSQKEHFNALRKFIEERSKYLENVENNFKRRM 433

Query: 277 ERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELRER 336
           E + +  +++ L   +++S+ A   D   +  + EK+   +     Q +    E E +E+
Sbjct: 434 EELNKKDEKVSLYLKEIESLKA---DMDSQILLLEKDREELRLKEIQHKAPDEELESKEK 490

Query: 337 EFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAA-----------PENLTSSGRNLQI 385
           E + +R  ++  ++ ++L     +  LQ+  + S             P      G+ L  
Sbjct: 491 EINLVRALIQKCNEKVKLIDDPNNLHLQVKTEESGCKPAGSSNTLHFPTGSALDGKLLLA 550

Query: 386 LLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCIL 445
           LL +HL+ HD++   +  T++ ++DPA LVLDAM  FYP H+     + D   ++R CI 
Sbjct: 551 LLCEHLKLHDLVRAELMITLKASSDPAKLVLDAMRWFYPTHTESKDAKIDFYNVKRGCIF 610

Query: 446 LLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGN 505
           L E L + +P+I   ++ EAL++A  WK  +   V++   V+ FL L+A ++LAS F+  
Sbjct: 611 LSELLLNFSPKITPPLKEEALRLAGLWKAKLVMPVENHAEVVAFLLLVANFRLASNFNAG 670

Query: 506 ELASLLDIVANHRQTPKLRRSLGFAD 531
           EL  LL+ V+ ++Q  +L R+LG  D
Sbjct: 671 ELQILLNSVSQYKQAFELSRALGIGD 696

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466953|ref|XP_004151190.1| PREDICTED: uncharacterized protein LOC101218416 [Cucumis sativus]

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 221/446 (49%), Gaps = 17/446 (3%)

Query: 97  KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKR 156
           KE  L  +EK IK    EL  KE+E   +  ++G  + +L SKE EL  +K+  ++  K 
Sbjct: 257 KEKRLDKIEKTIKVRTEELDLKEQEFDVMWSKLGALSEDLLSKESELESIKSCIKEHSKE 316

Query: 157 LNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKL 216
           L+++   +K+L+     +R+ +  ++++    ++I   I  C+++ E  E  + ++K  +
Sbjct: 317 LDVQ---EKQLDGTQQSIRDCQNAVMMLTNYVSTIEKAIIECSKEWELEENHHHSLKETV 373

Query: 217 ESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ 276
           +    +          + + +    + L+S +         +E + K LE  E  F R  
Sbjct: 374 DGNSNDFSSVVEQHGSISLTVDKCLEGLKSQKEHFNALRKFIEERSKYLENVENNFKRRM 433

Query: 277 ERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELRER 336
           E + +  +++ L   +++S+ A   D   +  + EK+   +     Q +    E E +E+
Sbjct: 434 EELNKKDEKVSLYLKEIESLKA---DMDSQILLLEKDREELRLKEIQHKAPDEELESKEK 490

Query: 337 EFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAA-----------PENLTSSGRNLQI 385
           E + +R  ++  ++ ++L     +  LQ+  + S             P      G+ L  
Sbjct: 491 EINLVRALIQKCNEKVKLIDDPNNLHLQVKTEESGCKPAGSSNTLHFPTGSALDGKLLLA 550

Query: 386 LLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCIL 445
           LL +HL+ HD++   +  T++ ++DPA LVLDAM  FYP H+     + D   ++R CI 
Sbjct: 551 LLCEHLKLHDLVRAELMITLKASSDPAKLVLDAMRWFYPTHTESKDAKIDFYNVKRGCIF 610

Query: 446 LLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGN 505
           L E L + +P+I   ++ EAL++A  WK  +   V++   V+ FL L+A ++LAS F+  
Sbjct: 611 LSELLLNFSPKITPPLKEEALRLAGLWKAKLVMPVENHAEVVAFLLLVANFRLASNFNAG 670

Query: 506 ELASLLDIVANHRQTPKLRRSLGFAD 531
           EL  LL+ V+ ++Q  +L R+LG  D
Sbjct: 671 ELQILLNSVSQYKQAFELSRALGIGD 696

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	645
TAIR|locus:2181241	1181	AT5G27220 "AT5G27220" [Arabido	0.744	0.406	0.241	9e-29
TAIR|locus:2181251	948	AT5G27230 [Arabidopsis thalian	0.262	0.178	0.308	6.6e-18
TAIR|locus:1005716104	558	AT5G48385 "AT5G48385" [Arabido	0.2	0.231	0.358	9.4e-12
TAIR|locus:2826175	473	FRL2 "AT1G31814" [Arabidopsis	0.336	0.458	0.244	6.8e-10
UNIPROTKB|Q8IUD2	1116	ERC1 "ELKS/Rab6-interacting/CA	0.342	0.198	0.256	4.2e-09
UNIPROTKB|E2QZC5	927	ERC1 "Uncharacterized protein"	0.367	0.255	0.247	5.4e-09
TAIR|locus:2171327	470	FRL1 "FRIGIDA like 1" [Arabido	0.179	0.246	0.36	5e-08
DICTYBASE|DDB_G0286985	1024	zipA "zipper-like domain-conta	0.548	0.345	0.169	7.4e-08
MGI|MGI:2151013	1120	Erc1 "ELKS/RAB6-interacting/CA	0.342	0.197	0.248	3.7e-07
UNIPROTKB|F1SQ11	1411	EEA1 "Uncharacterized protein"	0.553	0.253	0.213	3.8e-07

TAIR|locus:2181241 AT5G27220 "AT5G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 9.0e-29, P = 9.0e-29
 Identities = 122/505 (24%), Positives = 228/505 (45%)

Query:    64 DLTMKSLEKQSSSSIDVDMKIR--------LLDERA---KEIENKESELVLVEKKIKDCN 112
             ++ M+ LEK  + S ++  +I         +LD+ A   K IE  E EL L +K +   +
Sbjct:   322 NVVMEHLEKSQTRSRELAEEIERKRKELTAVLDKTAEYGKTIELVEEELALQQKLLDIRS 381

Query:   113 FELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDG 172
              EL  K+KEL  +   + + NS     ++ +  +++  ++      L +E+    ES+  
Sbjct:   382 SELVSKKKELDGLSLDLELVNSLNNELKETVQRIESKGKELEDMERLIQERSGHNESIKL 441

Query:   173 EVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKD 232
              + E  +EL + +E+   I   +   + ++ + E++   +  K  S++ +L+ T+  +++
Sbjct:   442 LLEEHSEELAIKEERHNEIAEAVRKLSLEIVSKEKTIQQLSEKQHSKQTKLDSTEKCLEE 501

Query:   233 LLVKLRLYEDNLQSLQSTVXXXXXXXXXXXXXXXXXXXXFCRIQERIEESSQELLLKENQ 292
                +L   E+ L S++ T                     F    ++I++S ++   KE +
Sbjct:   502 TTAELVSKENELCSVKDTYRECLQNWEIKEKELKS----FQEEVKKIQDSLKDFQSKEAE 557

Query:   293 LKSVLACIEDCSKEDQVKEKELISVGKSIXXXXXXXXXXXXXXXXXDSLRKAVEDSS--- 349
             L  +   + +  KE  +K+K++    + I                 D   K+ E      
Sbjct:   558 LVKLKESLTEHEKELGLKKKQIHVRSEKIELKDKKLDAREERLDKKDEQLKSAEQKLAKC 617

Query:   350 -KNLELRQKKLSDILQLH-PKRSA--APENLTSSGRNLQILLNQHLRRHDVIFCNVFDTI 405
              K  EL  KKL+   Q + P +      +      + LQ+LL  HL++ D +  +V   +
Sbjct:   618 VKEYELNAKKLASFCQQNNPDQQVDLVRDASVCDEKTLQLLLRGHLKKCDQLHLDVLRAL 677

Query:   406 RKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEA 465
             + ++DPA LVL+ +      H +    + D   +RR  I LLE L  ++PE  ++VQ EA
Sbjct:   678 KASSDPAKLVLNTIQRL---HEKMAVTKLDPDSVRRGSICLLECLMDMSPEPKTEVQVEA 734

Query:   466 LKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRR 525
             +K   EWK       ++ + VLGFLH L+A+ LA  FD +++ +L D     +  P L  
Sbjct:   735 IKSVTEWKNTTLVKAENPVEVLGFLHFLSAFSLAYTFDADKVQNLFDAAFLRQYAPSLCE 794

Query:   526 SLGFADEVPVMHHEQLSDVASEINP 550
             +LG +   PV +   L D   +  P
Sbjct:   795 ALGVSSLAPVNNVLSLDDKPEQQPP 819

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2181251 AT5G27230 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
 Identities = 55/178 (30%), Positives = 85/178 (47%)

Query:   361 DILQLHPKRSAAPENLTSSGRNLQILLN----QHLRRHDVIFCNVFDTIRKAADPALLVL 416
             D +  HP  +    N+ S      +L      Q L+  +    ++ + ++   DPA L L
Sbjct:   528 DTIATHPSGTETKLNILSGSIKADMLRELVEKQPLKESE----DLSNALKCTPDPAKLFL 583

Query:   417 DAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNM 476
             D      P ++  GY EF + I   +C LLL QL  L P+I   V+G+A K+AV WK  +
Sbjct:   584 DTSMALCPTNTEGGY-EFKMLITSASCSLLLNQLKKLLPKIGHPVKGDAKKLAVYWKDKI 642

Query:   477 EDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVP 534
               + +D L V+ FL  L  + + S F  ++L  LLD       +P L + LG  D +P
Sbjct:   643 AKSKRDQLEVICFLQFLGIFGIVSEFKADDLLGLLDNSYWQTVSPDLCQFLGLDDAIP 700

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716104 AT5G48385 "AT5G48385" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
 Identities = 52/145 (35%), Positives = 78/145 (53%)

Query:   406 RKAADPALLVLDAMSGFYPPHSREGYVEFDVSII--RRTCILLLEQLS---------SLA 454
             R AA+PA LVLD++ GFYP  +     + D +++  RRTCI+L+E LS          LA
Sbjct:   210 RAAANPASLVLDSLEGFYPMEAPTADGKKDANLLGMRRTCIMLMECLSILLSGLDRNCLA 269

Query:   455 PEINSQVQGEALKVAVEWKKNMEDTVKD-----SLVVLGFLHLLAAYKLASAFDGNELAS 509
               ++  V+  A  +A  W   +E    D     SL    FL LLA + + + F  +EL  
Sbjct:   270 VVLSQNVKHRAKTIAEGWNPLLESLDMDACNGNSLEAHAFLQLLATFAIVADFKEDELLK 329

Query:   510 LLDIVANHRQTPKLRRSLGFADEVP 534
             L+ +V+  RQ  +L RSLG A+++P
Sbjct:   330 LIPMVSRRRQAAELCRSLGLAEKMP 354

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2826175 FRL2 "AT1G31814" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 55/225 (24%), Positives = 104/225 (46%)

Query:   306 EDQVKEKELISVGKSIXXXXXXXXXXXXXXXXXDSLRKAVEDS-SKNLELRQKKLSDILQ 364
             +D    + L+S   ++                 + L+ AV  S S N+E      ++   
Sbjct:    26 DDLQAHRSLLSPSFNLSWSEIDSHFSSLQSSLFNRLQSAVTSSNSGNIETPTAVTTETPV 85

Query:   365 LHPK-RSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFY 423
             L P+ R    +N    G+ L   + ++ R+   I   + + IR + +PA LVLDA+ G Y
Sbjct:    86 LWPELRKFCEKN---DGKGLGNYMIENSRKRLSINEELPNAIRCSENPAPLVLDAIEGSY 142

Query:   424 PPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDS 483
                S           ++R  +LLLE L  +   + + ++  A  +A +WK N+ +   ++
Sbjct:   143 HCSSPSSSSSARAIDVKRIFVLLLEALIEINANLTNDLRERARTIAYDWKPNIGNKPSEA 202

Query:   484 LVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLG 528
             L   GFLHL+AA++L S F   E+   + +++ ++Q   + + +G
Sbjct:   203 L---GFLHLVAAFELGSLFSTEEICDYIFLISKYKQATTICKKIG 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

UNIPROTKB|Q8IUD2 ERC1 "ELKS/Rab6-interacting/CAST family member 1" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 63/246 (25%), Positives = 124/246 (50%)

Query:    23 SGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQ--------S 74
             S L  +E+ + + K+E L+    L         A+   E+ D  ++ LE++        S
Sbjct:   694 SRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSD-RIQHLEREITRYKDESS 752

Query:    75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA-CKEKELGFVRKRIGVCN 133
              +  +VD  + +L E   E  +K+ ++  +E+++KD N ++A  K KE    +K+     
Sbjct:   753 KAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQ-VEKKKSAQML 811

Query:   134 SELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRES-----EKELVLMKEQK 188
              E + +ED LN   +S+++    L   ++K  R+E L+  +RES     E+E+VL +E+ 
Sbjct:   812 EEARRREDNLN---DSSQQLQDSL---RKKDDRIEELEEALRESVQITAEREMVLAQEES 865

Query:   189 ASIRA--MIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY-EDNLQ 245
             A   A   +E     +E +++  +++KAKL S ++ L   +T + +L  + R + E+ L+
Sbjct:   866 ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLE 925

Query:   246 SLQSTV 251
               Q  +
Sbjct:   926 MKQEAL 931

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0007252 "I-kappaB phosphorylation" evidence=IDA

GO:0008385 "IkappaB kinase complex" evidence=IDA

GO:0043522 "leucine zipper domain binding" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

UNIPROTKB|E2QZC5 ERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 170 (64.9 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 63/255 (24%), Positives = 131/255 (51%)

Query:     2 LRRHSAVFDFAYLVTDIAILSSGLVLVELRVAELKKET-LRRSFDLPHE-QLGLFTAQWI 59
             L+ H++    + L  D  + +  + L + +   LK E+ L+++ +   E +     +  I
Sbjct:   678 LKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESHLKKAHEATLEARASPEMSDRI 737

Query:    60 QELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA-CK 118
             Q+L     +  ++ S +  +VD  + +L E   E  +K+ ++  +E+++KD N ++A  K
Sbjct:   738 QQLEREISRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLK 797

Query:   119 EKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRES- 177
              KE    +K+      E + +ED LN   +S+++    L   ++K  R+E L+  +RES 
Sbjct:   798 HKEQ-VEKKKSAQMLEEARRREDNLN---DSSQQLQDSL---RKKDDRIEELEEALRESV 850

Query:   178 ----EKELVLMKEQKA--SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMK 231
                 E+E+VL +E+ A  S    +E     +E +++  +++KAKL S ++ L   +T + 
Sbjct:   851 QITAEREMVLAQEESARTSAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLT 910

Query:   232 DLLVKLRLY-EDNLQ 245
             +L  + R + E+ L+
Sbjct:   911 NLRAERRKHLEEVLE 925

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=IEA

TAIR|locus:2171327 FRL1 "FRIGIDA like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 5.0e-08, P = 5.0e-08
 Identities = 45/125 (36%), Positives = 67/125 (53%)

Query:   405 IRKAADPALLVLDAMSGF-YPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQG 463
             IR + D A +VLDA+ G  Y P S  G   FDV   RR  +LL+E L  +   I    + 
Sbjct:   135 IRYSPDTASMVLDAIEGSNYTPSS-SGR-SFDV---RRVFVLLMEVLIEINANITVDTRN 189

Query:   464 EALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKL 523
              A K+A  WK  +     ++LV   FLHL+AA++L S FD  EL+  + ++A ++Q   +
Sbjct:   190 RAKKLAYHWKSKVGVKPFEALV---FLHLVAAFELGSEFDTEELSDYVFMIAKYKQATLV 246

Query:   524 RRSLG 528
                +G
Sbjct:   247 CNKIG 251

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 160 (61.4 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 62/366 (16%), Positives = 163/366 (44%)

Query:    32 VAELKKETL-RRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMK-IRLLDE 89
             +++LK++    +S +    Q  +     +Q  F+     L+ + S  ++   K   LL++
Sbjct:   445 ISQLKQQLASNQSTESQALQSKITELSQLQSEFEKLQNQLQSKDSELLETSKKQSALLEQ 504

Query:    90 RAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNS 149
             ++++ ++K+ +L  VE  ++    +L  K++EL  V+ ++   + + +SK+ +L  V+ +
Sbjct:   505 QSEDSQSKDEKLKSVELNLQQTLQQLQSKDQELQNVKSQLEQQSEDSESKDQKLKSVELT 564

Query:   150 AEKWPKRL-NLKKEKQKRLESLDGEVRESEKELVL-MKEQKASIRAMIEACTEKLEAIEE 207
              ++  ++L ++K + +++ E  + +  E  K + L +++Q  S  + + +  E+L+ +E 
Sbjct:   565 LQQTLQQLQDVKSQLEQQSEHNESK-DEKLKSIELNLQQQLQSKDSELSSKDEQLKCLES 623

Query:   208 SYDAVKAKLESEKRELELTQTFMKDLLV----KLRLYEDNLQSLQSTVXXXXXXXXXXXX 263
                +VK +L S+    +   + +KD L+    +L+  ++ L +  S +            
Sbjct:   624 ELSSVKEQLSSQSSNTDSELSSVKDQLLSKDSELKSKDEQLSNKDSQIKSIESDLQSVKD 683

Query:   264 XXXXXXXXFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIXX 323
                         ++++    ++L  K+ Q+KS+ + ++    +   K++EL S    +  
Sbjct:   684 QLSSKDQELQSTKDQLSSKDEQLSNKDTQIKSIESDLQSVKDQLSSKDQELQSTKDQLSS 743

Query:   324 XXXXXXXXXXXXXXXDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNL 383
                            D   ++ +D    L  +      +     +  +  + L+S    L
Sbjct:   744 KDQELQSTKDQLSTKDQELQSAKDQ---LSCQSSTTDQLSAKDTELQSTKDQLSSKDSEL 800

Query:   384 QILLNQ 389
             Q + +Q
Sbjct:   801 QSIKDQ 806

GO:0005615 "extracellular space" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:2151013 Erc1 "ELKS/RAB6-interacting/CAST family member 1" [Mus musculus (taxid:10090)]

 Score = 154 (59.3 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 62/250 (24%), Positives = 123/250 (49%)

Query:    23 SGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQ--------S 74
             S L  +E+ + + K+E L+    L         A+   E+ D  ++ LE++        S
Sbjct:   694 SRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSD-RIQQLEREISRYKDESS 752

Query:    75 SSSIDVDMKIRLLDERAKEIENKESELV----LVEKKIKDCNFELA-CKEKELGFVRKRI 129
              +  +VD  + +L E   E  +K+ ++     L  +++KD N ++A  K KE    +K+ 
Sbjct:   753 KAQTEVDRLLEILKEVENEKNDKDKKIAELESLTSRQVKDQNKKVANLKHKEQ-VEKKKS 811

Query:   130 GVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRES-----EKELVLM 184
                  E + +ED L+   +S+++    L   ++K  R+E L+  +RES     E+E+VL 
Sbjct:   812 AQMLEEARRREDSLS---DSSQQLQDSL---RKKDDRIEELEEALRESVQITAEREMVLA 865

Query:   185 KEQKASIRA--MIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY-E 241
             +E+ A   A   +E     +E +++  +++KAKL S ++ L   +T + +L  + R + E
Sbjct:   866 QEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLE 925

Query:   242 DNLQSLQSTV 251
             + L+  Q  +
Sbjct:   926 EVLEMKQEAL 935

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=ISO

GO:0008385 "IkappaB kinase complex" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

UNIPROTKB|F1SQ11 EEA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 81/380 (21%), Positives = 166/380 (43%)

Query:    27 LVELRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRL 86
             + EL+  +++KETL        E+L   +        +   +S +K  ++ +D++   + 
Sbjct:   838 VTELQKVKMEKETLVTELSAAKEKLSKVSDSLKNSKSEFEKES-QKGKAAILDLEKTCKD 896

Query:    87 LDERAK-EIEN---KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDE 142
             L  + + +IE+   +++EL    +K K+ + +L   + E+  ++ ++    + L+ KE E
Sbjct:   897 LKHQLQVQIESAHKEQNELKNSLEKEKETSHQL---KLEINSMQGQLTQAQNSLKQKEKE 953

Query:   143 LNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVR--ESEKELVLMKEQKASIRAMIEACTE 200
                ++ +  +  +   L ++K+K++E+L GEV+   S+K  +  K Q+ S +A  E   E
Sbjct:   954 EQQLQGNINELKQ---LTEQKKKQIEALQGEVKIAVSQKTELENKLQQQSTQAAQELAAE 1010

Query:   201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVXXXXXXXXX 260
             K E I    +A +   E+ K +L+ +  + K+   +L     +L+S++  +         
Sbjct:  1011 K-EKISVLQNAYEKNQENLK-QLQ-SDFYGKES--ELLATRQDLKSVEEKLSLAQEDLIS 1065

Query:   261 XXXXXXXXXXXFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKS 320
                           ++       Q+   KE QLK     ++D  KE  +KEKEL++    
Sbjct:  1066 NRNQIGNQNKLIQELKTARTTLEQDSAKKEEQLKEQCKALQDVQKEKSLKEKELVNEKSK 1125

Query:   321 IXXXXXXX-XXXXXXXXXXDSLRKAVEDSSK---NL-ELRQKKLSDILQLHPKRSAAPEN 375
             +                  + L+   ++S K   NL + RQ  +   L+L  K  +    
Sbjct:  1126 LAEIEEIKCRQEKEIAKLSEELKSHKQESIKEVTNLKDARQLLIQQKLELQGKVDSLKAT 1185

Query:   376 LTSSGRNLQILLNQHLRRHD 395
             L    +N Q+L  Q  +  D
Sbjct:  1186 LEQEKKNQQMLKEQMKKEED 1205

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	645
pfam07899	293	pfam07899, Frigida, Frigida-like protein	3e-38
pfam07899	293	pfam07899, Frigida, Frigida-like protein	1e-19
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-08
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-07
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
COG4372	499	COG4372, COG4372, Uncharacterized protein conserve	4e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	5e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	7e-05
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	1e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-04
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-04
TIGR00606	1311	TIGR00606, rad50, rad50	2e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score =  143 bits (362), Expect = 3e-38
 Identities = 70/161 (43%), Positives = 97/161 (60%), Gaps = 5/161 (3%)

Query: 380 GRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSII 439
            R L   + ++ +    +   V   +R A DPA LVLDA+ GFYPP S+ G  E  +  +
Sbjct: 24  SRGLLKFVIENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPDSKGGK-EDKMVDV 82

Query: 440 RRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVK----DSLVVLGFLHLLAA 495
           RR+C+LLLEQL  + P I+  V+ EA K+AVEWK  +E+        SL  LGFL LLAA
Sbjct: 83  RRSCVLLLEQLVRVNPPISPDVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFLQLLAA 142

Query: 496 YKLASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVM 536
           + L S FD +EL  L  +V+  +Q P+L RSLG AD++P +
Sbjct: 143 FGLVSEFDQDELLKLFVMVSRRKQAPELCRSLGLADKMPDL 183

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|219629 pfam07899, Frigida, Frigida-like protein

 Score = 89.7 bits (223), Expect = 1e-19
 Identities = 44/92 (47%), Positives = 55/92 (59%), Gaps = 4/92 (4%)

Query: 539 EQLSDVASEINPLVRDEAMKVAGEWKEKM----RAAVENSLEVLGLLHLLGAFRLAPAFD 594
           EQL  V   I+P V++EA K+A EWK K+          SLE LG L LL AF L   FD
Sbjct: 91  EQLVRVNPPISPDVKEEAKKLAVEWKAKLEEDGGVENGKSLEALGFLQLLAAFGLVSEFD 150

Query: 595 GNELESLLAIVAEDRQTPKLCRSLGFADKVPG 626
            +EL  L  +V+  +Q P+LCRSLG ADK+P 
Sbjct: 151 QDELLKLFVMVSRRKQAPELCRSLGLADKMPD 182

This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time. Length = 293

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 66.2 bits (162), Expect = 4e-11
 Identities = 55/265 (20%), Positives = 113/265 (42%), Gaps = 4/265 (1%)

Query: 85  RLLDERAKEIENKESELVLVEKKIKDCNFELACK-EKELGFVRKRIGVCNSELQSKEDEL 143
             + E  K +E  E  L  + KKIKD   E   + ++++G +   I      +  KE EL
Sbjct: 258 EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKEREL 317

Query: 144 NLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE 203
              +++ E+  K      +    +E L+ E+ E  K    + E+ A ++  +E    +LE
Sbjct: 318 ---EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE 374

Query: 204 AIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEK 263
            +++ +   + +L+  + +LE  +  + +L  +L   ++ LQ L   +      +   E 
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434

Query: 264 ELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQ 323
           ++   E E       I++   +L      L      + D  +E    EKEL  + + + +
Sbjct: 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494

Query: 324 FEERVREFELREREFDSLRKAVEDS 348
            E + R  E R R   ++ + ++ S
Sbjct: 495 AEAQARASEERVRGGRAVEEVLKAS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.1 bits (159), Expect = 9e-11
 Identities = 74/319 (23%), Positives = 138/319 (43%), Gaps = 9/319 (2%)

Query: 30  LRVAELKKETLRRSFDLPHEQLGLFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLLDE 89
            R  ELK E       L   +L     +   E  +  +  LE++      ++     L+E
Sbjct: 213 ERYQELKAELRELELALLLAKLKELRKEL--EELEEELSRLEEE------LEELQEELEE 264

Query: 90  RAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNS 149
             KEIE  +SEL  + +++++   EL   ++E+  +   I +    L+  E+EL  ++  
Sbjct: 265 AEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324

Query: 150 AEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIR-AMIEACTEKLEAIEES 208
            E+  +++   KE+ +  E+L  E+ +   EL   KE+      A++E   E  EA+ E 
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384

Query: 209 YDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK 268
              ++A+L   + ELE  +  ++ L  +L    + L+ L+  ++  E ELE  + ELE  
Sbjct: 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEEL 444

Query: 269 EREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERV 328
             E   ++E++EE    L   E +L  +   ++   KE    E  L  +    R  +   
Sbjct: 445 NEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVR 504

Query: 329 REFELREREFDSLRKAVED 347
              E  E     +   V +
Sbjct: 505 AVLEALESGLPGVYGPVAE 523

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 1e-10
 Identities = 69/288 (23%), Positives = 137/288 (47%), Gaps = 10/288 (3%)

Query: 85   RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELN 144
            R L+E  +E+   E EL  ++ ++++   EL   E+EL  +++R+     EL+S E+ L 
Sbjct: 716  RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 145  ----LVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTE 200
                 ++   EK        +E ++ LE  +  +   E+EL  +++++  +   IE   E
Sbjct: 776  KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 201  KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELEC 260
            ++E +EE  D ++ +LE  ++ELE  +  +++L  +    ED L+ L+      E EL  
Sbjct: 836  EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 261  KEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKEL-ISVGK 319
             E EL   + E  +++ER+EE   +L   E +L  +   +E+  ++    E E  I   +
Sbjct: 896  LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLE 955

Query: 320  SIRQFEERV-----REFELREREFDSLRKAVEDSSKNLELRQKKLSDI 362
               +    V      E+E  E  ++ L+   ED  +  E   + + ++
Sbjct: 956  EEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 70/293 (23%), Positives = 130/293 (44%), Gaps = 6/293 (2%)

Query: 87  LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146
           L     +++    EL  +E+++     EL   ++EL    K I    SEL+   +EL  +
Sbjct: 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286

Query: 147 KNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIE 206
               E+  +     +E +  +  L   + E E EL  ++E+   ++  IEA  E+LE  E
Sbjct: 287 ---QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERE 343

Query: 207 ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE 266
              + ++  L   +   E  +  +  LL +L   E+  ++L+  +   E EL     ELE
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEEL---EELFEALREELAELEAELAEIRNELE 400

Query: 267 LKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE 326
             +RE   ++ER+E  S+ L   + +LK + A +E+   E +   +EL  + + + +  +
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460

Query: 327 RVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSS 379
           R++E E    E     + +E    +LE R  +L    +      A  E L S 
Sbjct: 461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 64.3 bits (157), Expect = 2e-10
 Identities = 57/283 (20%), Positives = 126/283 (44%), Gaps = 20/283 (7%)

Query: 89  ERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN 148
           ER +EIE  E ++  +E+KI +    LA   KEL  + + +     EL+    +++ ++ 
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733

Query: 149 SAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEES 208
              +    +   +E   R+  L  E+ E E E+  ++E+       +     ++E +E  
Sbjct: 734 DLARLEAEVEQLEE---RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790

Query: 209 YDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK 268
            + +K +L++ +  L+  +        +L L  +   +L+  +   E  +   E+ LE  
Sbjct: 791 IEQLKEELKALREALDELRA-------ELTLLNEEAANLRERLESLERRIAATERRLEDL 843

Query: 269 EREFCRIQERIE------ESSQELLLK-ENQLKSVLACIEDCSKEDQVKEKELISVGKSI 321
           E +   + E IE      E  +EL+ + E++L+++L       +   +   EL  + + +
Sbjct: 844 EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903

Query: 322 RQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQ 364
           R+ E +  E     RE + LR+ +      LE  + ++ ++ +
Sbjct: 904 RELESKRSEL---RRELEELREKLAQLELRLEGLEVRIDNLQE 943

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 73/312 (23%), Positives = 145/312 (46%), Gaps = 24/312 (7%)

Query: 67  MKSLEKQSS------------SSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE 114
           +KSLE+Q+               +++ + +  L+E  +E+E  + EL   E+++++   E
Sbjct: 202 LKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE 261

Query: 115 LACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEV 174
           L   E++L  +R  +     E++  + EL  + N   +  ++  + +E+   LE    E+
Sbjct: 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 175 RESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLL 234
               +EL    ++ A   A +E   EKLE ++E  ++++A+LE  + ELE       +L 
Sbjct: 322 EAQLEELESKLDELAEELAELE---EKLEELKEELESLEAELEELEAELE-------ELE 371

Query: 235 VKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLK 294
            +L   E+ L++L+S V   E ++     E+E  E    R+++R E   QE+  +E   K
Sbjct: 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKK 429

Query: 295 SVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLEL 354
              A +++   E +  E+EL  + + + + EE + E      E +    A E     L+ 
Sbjct: 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489

Query: 355 RQKKLSDILQLH 366
           R   L  + +  
Sbjct: 490 RLDSLERLQENL 501

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.3 bits (149), Expect = 1e-09
 Identities = 65/290 (22%), Positives = 141/290 (48%), Gaps = 6/290 (2%)

Query: 66  TMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV 125
           ++    +   SS+    +++ L+E   E+E +  +L   E+++K    EL   E  L  +
Sbjct: 651 SITGGSRNKRSSLAQKRELKELEEELAELEAQLEKL---EEELKSLKNELRSLEDLLEEL 707

Query: 126 RKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMK 185
           R+++     +L+  + EL  ++   E+   RL   +E+   LE L+ E+ E ++ L  ++
Sbjct: 708 RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEE---LEELEEELEELQERLEELE 764

Query: 186 EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQ 245
           E+  S+   +    E++E +EE   A++ +LE  + ELE  +  +  L  +L   E   +
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 246 SLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK 305
            L+  +   E E+E  E++L+  E E   +++ +EE  +EL   E + + +   +++  +
Sbjct: 825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE 884

Query: 306 EDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELR 355
           E +  E+EL  +   + + +E + +   R  E ++  + +E     LE  
Sbjct: 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEE 934

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 60/250 (24%), Positives = 123/250 (49%), Gaps = 4/250 (1%)

Query: 114 ELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNS---AEKWPKRLNLKKE-KQKRLES 169
           EL   E+EL  +  ++     EL+S ++EL  +++      +  + L  + E  ++ L +
Sbjct: 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727

Query: 170 LDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTF 229
           L+ E+ + +  L  ++E+   +   +E   E+LE +EE  ++++  L   K E+E  +  
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787

Query: 230 MKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLK 289
            + L  +L   E+ L+  +  +   E ELE  E+  E  E+E   ++E IEE  ++L   
Sbjct: 788 RQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDEL 847

Query: 290 ENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSS 349
           E +L+ +   +E+  +E +  E E   +   +++ EE   E E   RE +S    +++  
Sbjct: 848 EEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907

Query: 350 KNLELRQKKL 359
           + L  R ++L
Sbjct: 908 EKLRERLEEL 917

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 3e-09
 Identities = 60/248 (24%), Positives = 119/248 (47%), Gaps = 2/248 (0%)

Query: 119 EKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQK-RLESLDGEVRES 177
           E++L    + +      L+  E +L  ++  AEK  +   LK E ++  L  L  +++E 
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237

Query: 178 EKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL 237
            KEL  ++E+ + +   +E   E+LE  E+  + +K++LE  + ELE  Q  + +L  ++
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297

Query: 238 RLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVL 297
              E  +  L+  +   ENELE  E+ LE  + +   ++E +EE    L   E  L  + 
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE 357

Query: 298 ACIEDCSKEDQVKEKELISVGKSIRQ-FEERVREFELREREFDSLRKAVEDSSKNLELRQ 356
              E+  ++     +EL  + +++R+   E   E      E + L++ +E   + LE   
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417

Query: 357 KKLSDILQ 364
           ++L D+ +
Sbjct: 418 ERLEDLKE 425

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 54/263 (20%), Positives = 113/263 (42%), Gaps = 9/263 (3%)

Query: 121 ELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQK-RLESLDGEVRESEK 179
           EL  V + I   +  +  K  +L  ++   EK  +   L KEK++     L  E    E+
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237

Query: 180 ELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELE-LTQTFMKDLLVKLR 238
           +   ++ Q AS+   +E  TE++  +E+  + ++  LE   ++++ L +     +  K+ 
Sbjct: 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIG 297

Query: 239 LYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLA 298
             E  + SL+ ++  +E ELE  E+ L   E E  ++   IEE  +E+  +  +   +  
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357

Query: 299 CIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNL----EL 354
              +  +E +    EL  V K    F E   E +    + + L++ + +  + L    E 
Sbjct: 358 EYAELKEELEDLRAELEEVDKE---FAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 355 RQKKLSDILQLHPKRSAAPENLT 377
            Q+   ++  L+   +     + 
Sbjct: 415 LQRLSEELADLNAAIAGIEAKIN 437

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 62/286 (21%), Positives = 128/286 (44%), Gaps = 30/286 (10%)

Query: 87   LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146
            L    +EIEN +SEL  +E +I++   +L   E+ L  +  R+   +S +   + EL+ +
Sbjct: 746  LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKL 803

Query: 147  KNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIE 206
            +    +           + RL  ++ ++     E   ++++   ++       E++++IE
Sbjct: 804  EEEVSRI----------EARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853

Query: 207  ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE 266
            +  + +  K E  + ELE  +  ++DL       E  L  L+      E +L    +ELE
Sbjct: 854  KEIENLNGKKEELEEELEELEAALRDL-------ESRLGDLKKERDELEAQL----RELE 902

Query: 267  LKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGK---SIRQ 323
             K  E     E+  +   EL  K   L+  L+ IED   ED+   +E +S+      +++
Sbjct: 903  RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962

Query: 324  FEERVREFE----LREREFDSLRKAVEDSSKNLELRQKKLSDILQL 365
             EE +R  E    L  +E++ + K +++  +     +++   IL+ 
Sbjct: 963  VEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 55.8 bits (135), Expect = 5e-08
 Identities = 69/277 (24%), Positives = 127/277 (45%), Gaps = 32/277 (11%)

Query: 84  IRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDEL 143
           I+ +  R + +E        +E+ IK+       KEKEL  V + I   +SEL    +EL
Sbjct: 171 IKEIKRRIERLEKFIKRTENIEELIKE-------KEKELEEVLREINEISSELPELREEL 223

Query: 144 NLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE 203
             ++   ++  +     +E +K LESL+G  R+ E       E+   +   IE   +++E
Sbjct: 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLE-------EKIRELEERIEELKKEIE 276

Query: 204 AIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQS---TVRLRENELEC 260
            +EE    +K +L+ +  E      F ++ L +LR  E  L  L+     +  R  ELE 
Sbjct: 277 ELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335

Query: 261 KEKELELKEREFCRIQERIEE------SSQELLLKENQLKSVLACIEDCSKEDQVKEKEL 314
           KE+ LE  +++   +++R+EE        +E   K+ +L+ +   +   + E   KE E 
Sbjct: 336 KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEE 395

Query: 315 IS-----VGKSIRQFEERVREFELREREFDSLRKAVE 346
           +      + + I +   R+ E +   +E   L+KA+E
Sbjct: 396 LEKAKEEIEEEISKITARIGELKKEIKE---LKKAIE 429

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.9 bits (135), Expect = 6e-08
 Identities = 50/220 (22%), Positives = 106/220 (48%), Gaps = 7/220 (3%)

Query: 154 PKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVK 213
             +    KE ++ L  L+ ++ + E+EL  +K +  S+  ++E    +LE +E   + +K
Sbjct: 663 LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 214 AKLESEKRELELTQTFMKDL---LVKLRLYEDNLQSLQSTVRLRENELECKEKELELKER 270
            +L + + ELE  Q+ +++L   L +L    + LQ     +      LE    +L+ +  
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 271 EFC----RIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE 326
           E       +QE +EE  +EL   E +L ++   +E   +  +  E+E+  + + I + EE
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEE 842

Query: 327 RVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLH 366
           ++ E E    E +   + +++  + LE  +++L D L+  
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 1e-07
 Identities = 60/246 (24%), Positives = 129/246 (52%), Gaps = 6/246 (2%)

Query: 119 EKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESE 178
           ++EL  + + +    ++L+  E+EL  +KN         +L +E +++LE L+ ++ E +
Sbjct: 666 KRELKELEEELAELEAQLEKLEEELKSLKNELRS---LEDLLEELRRQLEELERQLEELK 722

Query: 179 KELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR 238
           +EL  ++E+   +++ +E   E+LE +EE  + ++ +LE  + ELE  +  +  L  ++ 
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 239 LYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLA 298
             E+  Q+LQ  +   E ELE  E+ L+  ERE   +++R E   QE+   E +++ +  
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEE 842

Query: 299 CIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKK 358
            +++  +E +  EKEL  + + + + E    E    E E   L +  E+  + L   + +
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKEE---LEDELKELEEEKEELEEELRELESE 899

Query: 359 LSDILQ 364
           L+++ +
Sbjct: 900 LAELKE 905

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 24/320 (7%)

Query: 87  LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIG------VCNSELQSKE 140
           L+E  KE+E  E EL  +E++IK    ++   E +   + +  G      VC  EL  + 
Sbjct: 412 LEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH 471

Query: 141 DELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTE 200
           ++  L     E       L +EK++    L  E+ E EKEL  ++E+   +  + EA  E
Sbjct: 472 EKELLELYELELEELEEELSREKEEA--ELREEIEELEKELRELEEELIELLELEEALKE 529

Query: 201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELEC 260
           +LE   E  + +  +LE  K +L+L     + L  +LR  ED LQ L+  +         
Sbjct: 530 ELEEKLEKLENLLEELEELKEKLQL-----QQLKEELRQLEDRLQELKELLEELRLLRTR 584

Query: 261 KEKELELKERE------FCRIQERI-----EESSQELLLKENQLKSVLACIEDCSKEDQV 309
           KE+  EL+ER          ++ER+        S EL   EN+L+     +E   ++  +
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNL 644

Query: 310 KEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKR 369
           + +    +  ++ + EE+V E E   R      +  E   + LE  ++   ++ QL  + 
Sbjct: 645 QAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREEL 704

Query: 370 SAAPENLTSSGRNLQILLNQ 389
               + L    + ++ L ++
Sbjct: 705 EELLKKLGEIEQLIEELESR 724

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 44/205 (21%), Positives = 98/205 (47%)

Query: 165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELE 224
            RLE L  E+ E ++EL   +E+   + A ++   EKLE +      ++ ++E  ++EL 
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

Query: 225 LTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQ 284
                +  L  + ++  + L +L+  +   E +LE  E +L+    E   ++E++EE  +
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351

Query: 285 ELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKA 344
           EL   E +L+ + A +E+     +  E++L ++   + Q E ++          ++  + 
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 345 VEDSSKNLELRQKKLSDILQLHPKR 369
           +ED  + L+   ++L   L+    +
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELK 436

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 45/230 (19%), Positives = 100/230 (43%), Gaps = 6/230 (2%)

Query: 164 QKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKREL 223
           ++RLE L  E+   + EL  ++ +   +   +   + K+  IE+  + ++ + E  K  L
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

Query: 224 ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESS 283
           E  +  +  L  ++   +  L+ L++  R+ E E +  + E  L + E      RI E  
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEA--RIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797

Query: 284 QELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELR----EREFD 339
            EL   E ++  + A + +  ++      E   + K I++ +E+  + + +    E+E +
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

Query: 340 SLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQ 389
           +L    E+  + LE  +  L D+           + L +  R L+  + +
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 44/214 (20%), Positives = 92/214 (42%), Gaps = 8/214 (3%)

Query: 83  KIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDE 142
            I   +   ++ E + ++L     K+     E+   E+E+   RKR      E    ++E
Sbjct: 309 SIAEKERELEDAEERLAKLEAEIDKLLA---EIEELEREIEEERKRRDKLTEEYAELKEE 365

Query: 143 LNLVKNSAEKWPKRLNLKKEK----QKRLESLDGEVRESEKELVLMKEQKASIRAMIEAC 198
           L  ++   E+  K     +++    +++LE L  E+ E ++EL  ++E+   +   +   
Sbjct: 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADL 425

Query: 199 TEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENEL 258
              +  IE   + ++ + E +  E++  +  ++ L   L  YE  L  L+      E EL
Sbjct: 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485

Query: 259 ECKEKELELKEREFCRIQER-IEESSQELLLKEN 291
              ++EL   E +    +ER     + E +LK +
Sbjct: 486 SKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 37/218 (16%), Positives = 92/218 (42%), Gaps = 24/218 (11%)

Query: 164 QKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKREL 223
           + +L +L  E+  ++ E    + ++ + R+ ++   ++ EA+ +   A +  L   ++EL
Sbjct: 80  RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQEL 139

Query: 224 -------ELTQTFMKDLLVKLRLYEDNLQSLQ----------STVRLRENELECKEKELE 266
                  +  QT +K L  + R  E   QSLQ          + ++ +  +L+ +  ++E
Sbjct: 140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIE 199

Query: 267 LKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE 326
            + +         +  ++EL  +    +     I+    +   K +++ +  + IR+ E 
Sbjct: 200 QEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERER 259

Query: 327 RVREFELR----EREFDSLRKAVEDSSKNLELRQKKLS 360
           +++  E      E+E   L    +     + LRQ+  +
Sbjct: 260 QLQRLETAQARLEQEVAQLEAYYQAY---VRLRQQAAA 294

Length = 499

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 8e-06
 Identities = 74/348 (21%), Positives = 148/348 (42%), Gaps = 26/348 (7%)

Query: 18   IAILSSGLVLVELRVAELKKE--TLRRSFDLPHEQLGLFTAQWIQE--LFDLTMKSLEKQ 73
            I  L   +  +E ++AEL+K    LR+  +   E+L     +  +         K L + 
Sbjct: 679  IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 74   SSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCN 133
             +    ++ +I  L +   E+E +  EL   E+++++   ELA  E E+  +  +I    
Sbjct: 739  EAEVEQLEERIAQLSKELTELEAEIEEL---EERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 134  SELQ-------SKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKE 186
             EL+           EL L+   A    +RL   +  ++R+ + +  + + E+++  + E
Sbjct: 796  EELKALREALDELRAELTLLNEEAANLRERL---ESLERRIAATERRLEDLEEQIEELSE 852

Query: 187  QKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS 246
               S+ A IE   E +E +E   +A+  +  S +  L L ++ +++L  +LR  E     
Sbjct: 853  DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

Query: 247  LQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK- 305
            L+  +     +L   E  LE  E     +QER+ E     L  E          +D  + 
Sbjct: 913  LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL--EEAEALENKIEDDEEEA 970

Query: 306  EDQVK--EKELISVGK----SIRQFEERVREFELREREFDSLRKAVED 347
              ++K  E ++  +G     +I ++EE    ++    + + L +A E 
Sbjct: 971  RRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKET 1018

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 73/277 (26%), Positives = 133/277 (48%), Gaps = 25/277 (9%)

Query: 78  IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ 137
           +  + +  LL+E   E++  E EL  +E+K +    EL   EK L    + I +     Q
Sbjct: 445 LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQ 504

Query: 138 SKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEA 197
            KE E  L K + E+  K+    ++ +++L  L GE++  +KEL  ++E K         
Sbjct: 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELK--------- 555

Query: 198 CTEKLEAIEESYDAVKAKLESEKREL-ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLREN 256
             +KL  +E+  D ++ +L    +EL EL    +++L       E+ L+ L+        
Sbjct: 556 --KKLAELEKKLDELEEELAELLKELEELGFESVEEL-------EERLKELEPFYN-EYL 605

Query: 257 ELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELIS 316
           EL+  EKELE +E+E  +++E ++++ +EL   E +L+ +   +E+  K+   +E E + 
Sbjct: 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665

Query: 317 VGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLE 353
                 ++ E  RE      E + L K  E+  K LE
Sbjct: 666 -----EEYLELSRELAGLRAELEELEKRREEIKKTLE 697

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 66/315 (20%), Positives = 135/315 (42%), Gaps = 25/315 (7%)

Query: 68  KSLEKQSSSSIDV--DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV 125
           + LE Q S  ++   D+   L +E  +  + +E +    E++++     L  +  EL   
Sbjct: 188 EELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEE 247

Query: 126 RKRIGVCNSELQSKED-ELNLVKNSAEKWPKRLNLKKEKQ---KRLESLDGEVRESEKEL 181
           ++R+    + L   E  EL  +K   E+  +   L +E +   +RLE L+ E+ E E+EL
Sbjct: 248 KERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEEL 307

Query: 182 VLMK---EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR 238
             ++   E+   +   +++  E+LE +EE  + ++++LE    E       +++ L +L 
Sbjct: 308 EGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELE 367

Query: 239 LYEDNLQS----LQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLK 294
              + L+         ++  E  ++  ++EL         IQE +EE  +EL   E +L+
Sbjct: 368 ERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELE 427

Query: 295 SVLACIEDCSKEDQVKEKELIS------------VGKSIRQFEERVREFELREREFDSLR 342
            +   I+   ++    E + +             V       E      EL E E + L 
Sbjct: 428 ELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487

Query: 343 KAVEDSSKNLELRQK 357
           + +    +  ELR++
Sbjct: 488 EELSREKEEAELREE 502

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 72/308 (23%), Positives = 144/308 (46%), Gaps = 30/308 (9%)

Query: 66  TMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV 125
            ++ + + SS   ++  ++  L++  KE+E  + E+  +EK+++         E+++  +
Sbjct: 205 VLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIREL 264

Query: 126 RKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMK 185
            +RI     E++  E+++  +K   EK  + + L +  ++ L+    E+RE EK L  ++
Sbjct: 265 EERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLD----ELREIEKRLSRLE 320

Query: 186 EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQ 245
           E+   I   I+   EK E +EE    +K KL+  ++ LE  +   + L  + +  ++ L+
Sbjct: 321 EEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHE-LYEEAKAKKEELE 375

Query: 246 SLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK 305
            L+   RL     E  EKELE  E+    I+E I + +  +   + ++K +   IE+  K
Sbjct: 376 RLKK--RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433

Query: 306 -------------EDQVKE------KELISVGKSIRQFEERVREFELREREFDSLRKAVE 346
                        E+  KE       EL  + K +++ EE+ R+     RE + + K   
Sbjct: 434 AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKES 493

Query: 347 DSSKNLEL 354
           +  K  EL
Sbjct: 494 ELIKLKEL 501

Length = 880

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 36/166 (21%), Positives = 70/166 (42%), Gaps = 4/166 (2%)

Query: 202 LEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECK 261
           L A  ++Y A K KLE  +R+L     +     +K  +       L   +   + E   +
Sbjct: 347 LAAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGY--PLAEALSKVKEEERPR 404

Query: 262 EKELELKEREFCRIQERIEESSQELLLK--ENQLKSVLACIEDCSKEDQVKEKELISVGK 319
           EKE   +E               E  ++  E +   +   +E+  +E +  E EL    +
Sbjct: 405 EKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464

Query: 320 SIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQL 365
            +R    + RE   R+R  + L K +E+  K +E  ++KL+++ ++
Sbjct: 465 EVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510

Length = 652

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 45.7 bits (108), Expect = 7e-05
 Identities = 54/268 (20%), Positives = 104/268 (38%), Gaps = 13/268 (4%)

Query: 126 RKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMK 185
                +   EL+ KE     ++    K    L  +         L+ E  +  +EL+  +
Sbjct: 191 IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDE 250

Query: 186 EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQ 245
           +++      IE+  ++LE  EE    V  + + E++E +L +  +K L  +    +  L 
Sbjct: 251 QEE------IESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 304

Query: 246 SLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK 305
            L+      E +L+  EKEL+  E+E  + +E IEE  +EL   E + ++     E   K
Sbjct: 305 KLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEK 364

Query: 306 ED----QVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSD 361
                 Q++E+ L        +     +  E      +   K  +     LEL +++   
Sbjct: 365 LQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKL---LLELSEQEEDL 421

Query: 362 ILQLHPKRSAAPENLTSSGRNLQILLNQ 389
           + +   +     E L  S    Q  L +
Sbjct: 422 LKEEKKEELKIVEELEESLETKQGKLTE 449

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 44.9 bits (107), Expect = 1e-04
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 14/164 (8%)

Query: 175 RESEKELVLMKEQKASI--RAMIEACTEKLEAIEESYDAV---KAKLESEKRELELTQTF 229
           R +EK+L   +E    I   A  EA T K EA+ E+ + V   +A+LE E +E       
Sbjct: 21  RIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE--- 77

Query: 230 MKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLK 289
           ++ L  +L   E+ L     ++  +E  LE KEKEL  KE+    + E+ EE  + +  +
Sbjct: 78  LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKN---LDEKEEELEELIAEQ 134

Query: 290 ENQLKSVLACIEDCSKE---DQVKEKELISVGKSIRQFEERVRE 330
             +L+ +    ++ +KE   ++V+E+      K I++ EE  +E
Sbjct: 135 REELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKE 178

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.8 bits (107), Expect = 1e-04
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 177 SEKELVLMKEQKASI--RAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLL 234
           +E ++   +E+   I   A  EA   K EA+ E+ + +       ++EL   +  ++ L 
Sbjct: 29  AEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE 88

Query: 235 VKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLK 294
            +L   E+NL      +  RE ELE KEKELE K++E  + +E +EE  +E L +   L+
Sbjct: 89  KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE---LE 145

Query: 295 SVLACIEDCSKE---DQVKEKELISVGKSIRQFEERVRE 330
            +     + +KE   ++V+E+        I++ EE  +E
Sbjct: 146 RISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKE 184

Length = 520

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 44/265 (16%), Positives = 98/265 (36%), Gaps = 24/265 (9%)

Query: 79  DVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS 138
            +      L+   K+I + E    +  K+I+  + E      +   ++  +    +EL S
Sbjct: 191 KLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL----NELSS 246

Query: 139 KEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKA----SIRAM 194
            ED  N  ++  +     L+++ EK    + L+    +   + V             +  
Sbjct: 247 LEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKND 306

Query: 195 IEACTEKLEAIE---ESYDAVKAK---LESEKRELELTQTFMKDL---LVKLRLYEDNLQ 245
           IE   + L  I+     Y A+  K   L+ +  +    ++   DL   +++L  YE +  
Sbjct: 307 IENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYN 366

Query: 246 SLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK 305
           S           +E  +K++E   +   R+   I E  +   +  + +K  L  I    +
Sbjct: 367 SYL-------KSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQ 419

Query: 306 EDQVKEKELISVGKSIRQFEERVRE 330
           +   K   L    +++R+  + +  
Sbjct: 420 DISSKVSSLNQRIRALRENLDELSR 444

Length = 895

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 67/306 (21%), Positives = 138/306 (45%), Gaps = 35/306 (11%)

Query: 83  KIRLLDERAKEIENKESELVLVEKKIKDCNFELA-------------CKEKELGFVRKRI 129
           +I  ++ER KE+E KE  L  ++KK+K+    L               K++EL  ++KR+
Sbjct: 322 EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381

Query: 130 GVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKEL-------- 181
                  +  E EL  ++ + E+  + ++    +   L+    E++++ +EL        
Sbjct: 382 T--GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP 439

Query: 182 ----VLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL 237
                L +E +  +     A  +++E   +  +  + KL  E RELE       +L+   
Sbjct: 440 VCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK 499

Query: 238 RLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRI---QERIEESSQELLLKENQLK 294
            L E   +  +   +    ELE K +E E  + +  ++    + +++  ++L   + +L 
Sbjct: 500 ELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA 559

Query: 295 SVLACIEDCSKEDQVKEKELISVG-KSIRQFEERVREFELREREFDSLRKAVEDSSKNLE 353
            +   +++  +E     KEL  +G +S+ + EER++E E    E+  L+    D+ K LE
Sbjct: 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK----DAEKELE 615

Query: 354 LRQKKL 359
             +K+L
Sbjct: 616 REEKEL 621

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 73/306 (23%), Positives = 138/306 (45%), Gaps = 23/306 (7%)

Query: 79  DVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS 138
            ++ ++  L++  +EIE + S++     ++K    EL    +EL   + +  VC  EL +
Sbjct: 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREL-T 446

Query: 139 KEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEK------ELVLMKEQKASIR 192
           +E    L++    +  +     KE +++   L  E+RE EK      EL+ +KE    ++
Sbjct: 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLK 506

Query: 193 AMIEACT----EKLEAIEESYDAVK---AKLESEKRELELTQTFMKDLLVKLRLYEDNLQ 245
            + E       E+LE   E Y+ +K    KL+ E + L+     +++L  KL   E  L 
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566

Query: 246 SLQSTVRLRENELE------CKEKELELKE-REFCRIQERIEESSQELLLKENQLKSVLA 298
            L+  +     ELE       +E E  LKE   F      ++++ +EL  +E +LK +  
Sbjct: 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626

Query: 299 CIEDCSKEDQVKEKELISVGKSIRQFEER--VREFELREREFDSLRKAVEDSSKNLELRQ 356
            ++   +E    EK L  + K + + E++    E+E    E+  L + +      LE  +
Sbjct: 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELE 686

Query: 357 KKLSDI 362
           K+  +I
Sbjct: 687 KRREEI 692

Length = 880

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 50/260 (19%), Positives = 119/260 (45%), Gaps = 14/260 (5%)

Query: 133  NSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIR 192
            N E Q K+ EL+ V +  E   K   L +++Q++++ L  +  E + E + +       +
Sbjct: 828  NQEKQEKQHELDTVVSKIELNRK---LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQ 884

Query: 193  AMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVR 252
               E   E    ++     +K      K +    +TF++    +    E+ + S +++ +
Sbjct: 885  QFEEQLVELSTEVQSLIREIKDA----KEQDSPLETFLEKDQQE---KEELISSKETSNK 937

Query: 253  LRENELECKEKELELKEREFCRIQERIEESSQELLL-KENQLKSVLACIEDCSKEDQVKE 311
              ++++   +++++        I+ +I++   + L  KE +L +V A +E+C K  +   
Sbjct: 938  KAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKIN 997

Query: 312  KELISVGKSI--RQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKR 369
            +++  + + I  ++ +ER  +  L  R+ ++  K VE+  K   L++     +LQ+  + 
Sbjct: 998  EDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQH-LKEMGQMQVLQMKQEH 1056

Query: 370  SAAPENLTSSGRNLQILLNQ 389
                EN+    RN  + L +
Sbjct: 1057 QKLEENIDLIKRNHVLALGR 1076

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 12/231 (5%)

Query: 68  KSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRK 127
           +  EK     I +  +I+ L +  +++E  + +L  +EKK+ +        E+EL  + K
Sbjct: 525 EEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE-------LEEELAELLK 577

Query: 128 RIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQ 187
            +           +EL       E +       K+ +K LE  + E+++ E+EL    E+
Sbjct: 578 ELE---ELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEE 634

Query: 188 KASIRAMIEACTEKLEAIEESYDAVK-AKLESEKRELELTQTFMKDLLVKLRLYEDNLQS 246
            A     +E   ++LE +E+ Y   +  +L  E  EL      ++  L +L    + ++ 
Sbjct: 635 LAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694

Query: 247 LQSTVRLRENELECKEKELELKEREFCRIQERIEESSQ-ELLLKENQLKSV 296
               ++    E E  +KELE  E+   R++E  E+  + + LLKE  L  V
Sbjct: 695 TLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKV 745

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 49/209 (23%), Positives = 100/209 (47%), Gaps = 15/209 (7%)

Query: 153 WPKRLNLKKEKQKRLESL----------DGEVRESEKELVLMKEQKASIRAMIEACTEKL 202
           +     + KE ++R+E L          +  ++E EKEL  +  +   I + +    E+L
Sbjct: 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223

Query: 203 EAIEESY---DAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVR-LRENEL 258
           E +E+     + +K ++E  ++ELE  +   + L  K+R  E+ ++ L+  +  L E   
Sbjct: 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283

Query: 259 ECKE-KELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISV 317
           E KE KE   +  +     E   +  +E+  + ++L+  +  IE+  KE + KE+ L  +
Sbjct: 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343

Query: 318 GKSIRQFEERVREFELREREFDSLRKAVE 346
            K +++ E+R+ E E R   ++  +   E
Sbjct: 344 KKKLKELEKRLEELEERHELYEEAKAKKE 372

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 56/293 (19%), Positives = 110/293 (37%), Gaps = 23/293 (7%)

Query: 105 EKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ 164
           ++++     EL   E  L  + + +   + ++   E E+  ++   EK  +RL   +E  
Sbjct: 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746

Query: 165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEA-------------------- 204
             LE     V+   KEL    E+       +E     LEA                    
Sbjct: 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEE 806

Query: 205 ---IEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECK 261
              IE     ++ KL     E E  +  +++L  +    ++ ++S++  +     + E  
Sbjct: 807 VSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866

Query: 262 EKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSI 321
           E+ELE  E     ++ R+ +  +E    E QL+ +   IE+   + + K K L  +   +
Sbjct: 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926

Query: 322 RQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPE 374
              EE + E E  + E + + +            Q+   +I  L P    A +
Sbjct: 927 EALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQ 979

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 15/178 (8%)

Query: 195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQT------FMKDLLVKLRLYEDNLQSLQ 248
            E   E+LE +EE+ + +   ++ ++++LE  +         + LL + R YE      +
Sbjct: 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKE 231

Query: 249 STVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQ 308
                 E + E  E++L   E E  ++ E I E  + L   E  L+ +   I+D  +E+Q
Sbjct: 232 --KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ 289

Query: 309 VK-EKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQL 365
           ++ ++++  +   I   E  + E E        L  A E  +K      K L++I +L
Sbjct: 290 LRVKEKIGELEAEIASLERSIAEKERE------LEDAEERLAKLEAEIDKLLAEIEEL 341

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 1/171 (0%)

Query: 87   LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146
            LDE  +E+E  E EL  +++++++   E    E EL  + +       EL+  E EL  +
Sbjct: 844  LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 147  KNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIE 206
            K   EK  +RL   + K +RLE  +    E E E       +  +   IE   E++EA+ 
Sbjct: 904  KEEIEKLRERLEELEAKLERLEV-ELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962

Query: 207  ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENE 257
                    + E  +   E  ++  +DL        + ++ L    R R  E
Sbjct: 963  PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 64/282 (22%), Positives = 133/282 (47%), Gaps = 29/282 (10%)

Query: 83  KIRLLDERAKEIENKESEL----VLVEKKIKDCNFELACKE--KELGFVRKRIGVCNSE- 135
           +++ +++  KEIE KE +L      +EK +K  +  +  KE  ++L  + +++   N E 
Sbjct: 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEE 519

Query: 136 LQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIR--- 192
           L+ K +E   +K    K    +   K++ ++LE L  ++ E EK+L  ++E+ A +    
Sbjct: 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL 579

Query: 193 -----AMIEACTEKLEAIEESYD------AVKAKLESEKRELELTQTFMKDLLVKLRLYE 241
                  +E   E+L+ +E  Y+        + +LE E++EL+  +  +     +L   E
Sbjct: 580 EELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639

Query: 242 DNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIE 301
             L+ L+    L E E +  E+E E    E+  +   +     EL   E + + +   +E
Sbjct: 640 KRLEELRK--ELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLE 697

Query: 302 DCS---KEDQVKEKELISVGKSIRQFE---ERVREFELRERE 337
                 +E +  +KEL  + K++ + E   E+V++++   +E
Sbjct: 698 KLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739

Length = 880

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 0.002
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 21/111 (18%)

Query: 254 RENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKE 313
           +E E   KE  LE KE     I +   E  +EL  + N+L+           E ++ +KE
Sbjct: 49  KEAEAIKKEALLEAKEE----IHKLRNEFEKELRERRNELQK---------LEKRLLQKE 95

Query: 314 LISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQ 364
                      + ++   E RE E +   K +E   + LE ++++L ++++
Sbjct: 96  --------ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138

Length = 520

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 22/221 (9%)

Query: 87  LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146
           L +  KEI   E ++   + +      +L   E E+  +  ++     E      +L   
Sbjct: 40  LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL----IETADDLKKLRKQ 95

Query: 147 KNSAEKWPKRLNLKKEKQKRL--ESLDGEVR----ESEKELVLMKEQKASIRAMIEACTE 200
                     L +++ +Q+R   E L    R         LV  ++ + S+R  I     
Sbjct: 96  IADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIY---- 151

Query: 201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELEC 260
                   Y A+          L+ T   +  +  ++   +  L +L S  R ++ +L  
Sbjct: 152 --------YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ 203

Query: 261 KEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIE 301
             +E +    +        ++  +EL   E++LK+ +A  E
Sbjct: 204 LLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244

Length = 420

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	645
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	100.0
PF07899	290	Frigida: Frigida-like protein; InterPro: IPR012474	99.89
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.88
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.76
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.66
KOG0018	1141	consensus Structural maintenance of chromosome pro	99.51
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.44
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.42
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.35
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.34
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.33
PRK02224	880	chromosome segregation protein; Provisional	99.33
PRK02224	880	chromosome segregation protein; Provisional	99.3
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.12
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.03
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.96
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.96
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.94
PRK01156	895	chromosome segregation protein; Provisional	98.91
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.9
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.89
PRK01156	895	chromosome segregation protein; Provisional	98.89
PRK03918	880	chromosome segregation protein; Provisional	98.85
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.84
PRK04778	569	septation ring formation regulator EzrA; Provision	98.79
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.74
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.69
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.69
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.63
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.62
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.56
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.56
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.53
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.52
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.48
PHA02562	562	46 endonuclease subunit; Provisional	98.46
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.44
PRK04778	569	septation ring formation regulator EzrA; Provision	98.42
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.41
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.38
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.37
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.37
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.36
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	98.33
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	98.31
PHA02562	562	46 endonuclease subunit; Provisional	98.3
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.27
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.25
KOG0964	1200	consensus Structural maintenance of chromosome pro	98.22
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	98.22
PRK04863	1486	mukB cell division protein MukB; Provisional	98.14
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.03
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.02
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.97
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.96
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.9
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.9
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.86
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.86
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.85
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.83
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.83
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.8
PRK04863	1486	mukB cell division protein MukB; Provisional	97.8
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.78
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.78
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.71
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.7
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.61
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.57
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.56
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.55
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.54
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.49
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.49
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.45
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.44
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.41
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.4
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.37
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.37
KOG0979	1072	consensus Structural maintenance of chromosome pro	97.36
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.35
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.28
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.23
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.22
KOG0963	629	consensus Transcription factor/CCAAT displacement	97.17
KOG0979	1072	consensus Structural maintenance of chromosome pro	97.1
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.02
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.0
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.96
PRK09039	343	hypothetical protein; Validated	96.95
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.9
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.9
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.88
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.84
PRK09039	343	hypothetical protein; Validated	96.83
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.82
COG4372	499	Uncharacterized protein conserved in bacteria with	96.8
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.73
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.71
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.69
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.64
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.59
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.48
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.43
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.37
PRK11281	1113	hypothetical protein; Provisional	96.35
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.31
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.27
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.27
COG4477	570	EzrA Negative regulator of septation ring formatio	96.18
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.13
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.09
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	96.07
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.07
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.95
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.91
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.87
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.86
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.82
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	95.8
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.78
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.76
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.73
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.72
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.54
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.51
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.32
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.22
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.11
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.11
COG2433	652	Uncharacterized conserved protein [Function unknow	95.03
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.98
PRK10246	1047	exonuclease subunit SbcC; Provisional	94.95
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.91
PRK10869	553	recombination and repair protein; Provisional	94.87
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.8
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.72
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	94.61
PRK11281	1113	hypothetical protein; Provisional	94.6
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	94.54
COG4372	499	Uncharacterized protein conserved in bacteria with	94.53
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.52
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.51
PF13514	1111	AAA_27: AAA domain	94.47
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.42
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.25
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.18
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.13
KOG1937	521	consensus Uncharacterized conserved protein [Funct	93.95
PF13166	712	AAA_13: AAA domain	93.93
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	93.72
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	93.7
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.55
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.46
COG2433	652	Uncharacterized conserved protein [Function unknow	93.43
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	93.38
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.16
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	93.04
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	93.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.03
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.99
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.87
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	92.78
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.78
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.77
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.54
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	92.52
PRK12704	520	phosphodiesterase; Provisional	92.49
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	92.34
KOG2991	330	consensus Splicing regulator [RNA processing and m	92.34
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	92.21
PF13166	712	AAA_13: AAA domain	92.0
KOG0249	916	consensus LAR-interacting protein and related prot	91.86
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	91.79
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	91.75
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.68
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	91.45
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	91.38
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.35
PRK10246	1047	exonuclease subunit SbcC; Provisional	91.32
PRK12704	520	phosphodiesterase; Provisional	91.23
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	91.0
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.0
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.9
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	90.69
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	90.61
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	90.39
KOG0249	916	consensus LAR-interacting protein and related prot	90.39
PRK10929	1109	putative mechanosensitive channel protein; Provisi	90.31
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.07
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.81
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	89.76
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	89.65
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.45
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.44
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	88.9
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	88.84
PF14992	280	TMCO5: TMCO5 family	88.74
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	88.64
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	88.56
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	87.99
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	87.79
PRK10869	553	recombination and repair protein; Provisional	87.52
KOG4302	660	consensus Microtubule-associated protein essential	87.38
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	86.92
PRK10929	1109	putative mechanosensitive channel protein; Provisi	86.52
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	86.23
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	86.13
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	86.13
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	85.85
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	85.54
PF06120	301	Phage_HK97_TLTM: Tail length tape measure protein;	85.31
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	85.21
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	84.64
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.5
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.4
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	84.26
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	83.74
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	83.56
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	83.4
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	82.64
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	82.47
PF14992	280	TMCO5: TMCO5 family	82.03
PRK00106	535	hypothetical protein; Provisional	81.78
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	81.73
KOG2991	330	consensus Splicing regulator [RNA processing and m	81.5
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.47
PF07851	330	TMPIT: TMPIT-like protein; InterPro: IPR012926 A n	81.31
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	80.8

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=100.00  E-value=7.5e-58  Score=475.04  Aligned_cols=242  Identities=33%  Similarity=0.508  Sum_probs=220.9

Q ss_pred             CCCCCchhhhhCChhHHHHHHHHhhhhhhhhhhhhHHHHhhCCCchhhHhhhhcCCCCCCCCCCcccchhhHhHHHHHHH
Q 039206          367 PKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILL  446 (645)
Q Consensus       367 p~~~l~~lc~~md~~~L~~~i~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd~~e~~~~~~~~~~~~~~~~~~~r~~cill  446 (645)
                      |++.+..+|++|||+||++||++|+++..++|+|+|+||++|||||+||||+++|||+++.+. +++.++..+||+||+|
T Consensus        11 ~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cilL   89 (290)
T PF07899_consen   11 PRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACILL   89 (290)
T ss_pred             hHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999999999999765 7788899999999999


Q ss_pred             HHhhhhcCCCCChhhHHHHHHHHHHHHHhc-cccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHHh
Q 039206          447 LEQLSSLAPEINSQVQGEALKVAVEWKKNM-EDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRR  525 (645)
Q Consensus       447 LE~L~~~~p~i~~~vke~A~~lA~~WK~~i-~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~~  525 (645)
                      ||+|+.++|.++|+|+++|+++|.+||++| +.+++++++|+||||||++|||+++||.|||++||..+++|+|+|+||+
T Consensus        90 LE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~~  169 (290)
T PF07899_consen   90 LEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELCR  169 (290)
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHHH
Confidence            999999999999999999999999999999 7778899999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCcchhhhh------hhccc----------cccCChhhHHHHHHHHHHHHHhhhh---------hhhchhhH-HH
Q 039206          526 SLGFADEVPVMHHE------QLSDV----------ASEINPLVRDEAMKVAGEWKEKMRA---------AVENSLEV-LG  579 (645)
Q Consensus       526 ~lgl~~ki~~~v~~------~i~Av----------~f~~~pllk~~a~k~a~~wk~~~~~---------~~~~~lea-~~  579 (645)
                      +|||++||||+|++      ||+||          .|.|+|+|++|++.....|+.....         +.+.++.| ++
T Consensus       170 sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~~a~~ea~~kel~aL~~  249 (290)
T PF07899_consen  170 SLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSSEAQNEANEKELAALKS  249 (290)
T ss_pred             HcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            99999999999998      99999          3357899999998766666643321         11234555 59


Q ss_pred             HHHHHHHhCCCCCCChhhHHHHHHHHHhcc
Q 039206          580 LLHLLGAFRLAPAFDGNELESLLAIVAEDR  609 (645)
Q Consensus       580 ~L~~I~~y~L~s~f~~d~L~k~v~~~a~~k  609 (645)
                      +++||++|+|+++||.+.|.+++.++.+.+
T Consensus       250 vikcIee~kLes~~~~~~l~kri~~Lek~~  279 (290)
T PF07899_consen  250 VIKCIEEHKLESEFPLEPLQKRIEQLEKQK  279 (290)
T ss_pred             HHHHHHHhccccccChHHHHHHHHHHHHHH
Confidence            999999999999999999999999998654

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT)

Probab=99.89  E-value=1.5e-23  Score=218.57  Aligned_cols=111  Identities=43%  Similarity=0.681  Sum_probs=104.3

Q ss_pred             hhhhhhhccccccCChhhHHHHHHHHHHHHHhh-hhhhhchhhHHHHHHHHHHhCCCCCCChhhHHHHHHHHHhccchHH
Q 039206          535 VMHHEQLSDVASEINPLVRDEAMKVAGEWKEKM-RAAVENSLEVLGLLHLLGAFRLAPAFDGNELESLLAIVAEDRQTPK  613 (645)
Q Consensus       535 ~~v~~~i~Av~f~~~pllk~~a~k~a~~wk~~~-~~~~~~~lea~~~L~~I~~y~L~s~f~~d~L~k~v~~~a~~k~~~~  613 (645)
                      .++.+++..+.+.++|.+++.|+++|.+||.++ +.++.++++|+|||+||++|||.++||.++|+++|..+++|+|||+
T Consensus        87 ilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~  166 (290)
T PF07899_consen   87 ILLLEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPE  166 (290)
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHH
Confidence            345567777788999999999999999999999 6677899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCccchhHHHHHHhccccchhcccC
Q 039206          614 LCRSLGFADKVPGKLSVIEIQMYWLQLVLFIK  645 (645)
Q Consensus       614 l~~~lgl~~k~p~~i~~l~~~~~~~~av~~~~  645 (645)
                      ||++|||++||||+|++||++||||+||+||.
T Consensus       167 L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~  198 (290)
T PF07899_consen  167 LCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIY  198 (290)
T ss_pred             HHHHcCchhhhHHHHHHHHHCCCccchHHHHH
Confidence            99999999999999999999999999999973

This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.88  E-value=5.7e-19  Score=216.36  Aligned_cols=417  Identities=21%  Similarity=0.255  Sum_probs=302.5

Q ss_pred             HHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           39 TLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA  116 (645)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~  116 (645)
                      .+..++..+..+...+..++  +..++..+...+.   ++...++....+++.+...+.....+++.+...+..+..++.
T Consensus       671 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  747 (1163)
T COG1196         671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE---ELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE  747 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888888888888  8888888888888   888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          117 CKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIE  196 (645)
Q Consensus       117 ~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE  196 (645)
                      .+..++..++.++......+..+++.+..++..+......   .+.++..+..+.+++.....++..++.++..+....+
T Consensus       748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  824 (1163)
T COG1196         748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK---RQALQEELEELEEELEEAERRLDALERELESLEQRRE  824 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888887777777765521   1346677777777887777777777777777777777


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206          197 ACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ  276 (645)
Q Consensus       197 ~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~  276 (645)
                      .+..++..+..++..++..+......+..++..+.++..++..++.++..+...+...+.+...+.+++..+...+..+.
T Consensus       825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~  904 (1163)
T COG1196         825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK  904 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777766666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHH-hHH-HHHhhHHHHHHHHHHhhhhH----HhhHHHHHHHhhhhh
Q 039206          277 ERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEK-ELI-SVGKSIRQFEERVREFELRE----REFDSLRKAVEDSSK  350 (645)
Q Consensus       277 ~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~-el~-~v~~~i~~le~~~~eLE~~n----~e~~~~~~~~~~~~~  350 (645)
                      ..+......+..+..........++.....+..... .+. .++.++..++.++..|+|||    ++|+++..++    .
T Consensus       905 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~----~  980 (1163)
T COG1196         905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERY----E  980 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHH----H
Confidence            666666555555544444443333333333332111 122 68999999999999999999    9999999999    5


Q ss_pred             hHHHhHHhhH----HHHhhCCCCCCchhhhhCChhHHH------HHHHHhhhhhhhhhhhhHHHHhhCC-CchhhHhhhh
Q 039206          351 NLELRQKKLS----DILQLHPKRSAAPENLTSSGRNLQ------ILLNQHLRRHDVIFCNVFDTIRKAA-DPALLVLDAM  419 (645)
Q Consensus       351 el~~k~~~l~----~~i~~~p~~~l~~lc~~md~~~L~------~~i~~~~ke~~~lr~e~~~AL~~a~-dPa~LVLd~~  419 (645)
                      .|..+...+.    ...+..         ..||.....      ..|+.||+.++   .      ...+ +-|.|+|+-.
T Consensus       981 ~l~~~~~dl~~a~~~l~~~i---------~~~d~~~~~~f~~~f~~In~~F~~if---~------~L~~GG~a~L~l~~~ 1042 (1163)
T COG1196         981 ELKSQREDLEEAKEKLLEVI---------EELDKEKRERFKETFDKINENFSEIF---K------ELFGGGTAELELTEP 1042 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH---H------HhCCCCeeEEEeCCC
Confidence            6666655441    111222         334444433      45677776666   3      4456 4899999999


Q ss_pred             cCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHh
Q 039206          420 SGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAA  495 (645)
Q Consensus       420 e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~  495 (645)
                      .+||.+|..    |.++.          +.=|..|                           +||+++|.|++||+.|..
T Consensus      1043 dd~l~~Giei~a~ppgK~----------~~~l~~L---------------------------SGGEKsLtAlAllFAi~~ 1085 (1163)
T COG1196        1043 DDPLTAGIEISARPPGKK----------LQSLSLL---------------------------SGGEKSLTALALLFAIQK 1085 (1163)
T ss_pred             CchhhcCcEEEEECCCCC----------ccchhhc---------------------------CCcHHHHHHHHHHHHHHh
Confidence            999887753    33333          1123444                           899999999999999999


Q ss_pred             hcCCCCCChHHHHHHHHhhhccccc
Q 039206          496 YKLASAFDGNELASLLDIVANHRQT  520 (645)
Q Consensus       496 ygi~~~f~~del~~l~~~v~~~~~~  520 (645)
                      |.|+|+|-.||++..+|.+...+.+
T Consensus      1086 ~~PaPf~vLDEVDAaLD~~Nv~r~~ 1110 (1163)
T COG1196        1086 YRPAPFYVLDEVDAALDDANVERVA 1110 (1163)
T ss_pred             hCCCCeeeeccchhhccHHHHHHHH
Confidence            9999999999999999987665544

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.76  E-value=5.9e-15  Score=181.32  Aligned_cols=417  Identities=18%  Similarity=0.231  Sum_probs=217.5

Q ss_pred             HHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           39 TLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA  116 (645)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~  116 (645)
                      .+...++.+..++..+...+  ++..+..+...+.   .+...+......+......+..+..++..+...+..+...+.
T Consensus       678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~---~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~  754 (1164)
T TIGR02169       678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELS---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE  754 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555  5555555555555   555555555555555555555555555555555555555666


Q ss_pred             HHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          117 CKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIE  196 (645)
Q Consensus       117 ~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE  196 (645)
                      ....++..+...+.....++..++.++..++.++....  +   ..+..++..++.++..+...+..++.++..+..++.
T Consensus       755 ~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~--~---~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~  829 (1164)
T TIGR02169       755 NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--I---PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE  829 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666665656666555555544332111  0   012333444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206          197 ACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ  276 (645)
Q Consensus       197 ~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~  276 (645)
                      .++.++..+..++..+...+......+..+...+.++..++..++.++..+..++..+...+.....++..+..++..+.
T Consensus       830 ~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~  909 (1164)
T TIGR02169       830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE  909 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444443444444443333333333333333333333333333333333333333333334444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhH------HHHhHHHHHhhHHHHHHHHHHhhhhH----HhhHHHHHHHh
Q 039206          277 ERIEESSQELLLKENQLKSVLACIEDCSKEDQV------KEKELISVGKSIRQFEERVREFELRE----REFDSLRKAVE  346 (645)
Q Consensus       277 ~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~------ke~el~~v~~~i~~le~~~~eLE~~n----~e~~~~~~~~~  346 (645)
                      ..+......+..+...+..+...+..+......      ...++..+..++..+..++..++|+|    .+|+++..++ 
T Consensus       910 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~-  988 (1164)
T TIGR02169       910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRL-  988 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-
Confidence            444444444444444333333333332222110      11246788889999999999999999    9999998888 


Q ss_pred             hhhhhHHHhHHhh-------HHHHhhCCCCCCchhhhhCChhHHH--HHHHHhhhhhhhhhhhhHHHHhhCCCchhhHhh
Q 039206          347 DSSKNLELRQKKL-------SDILQLHPKRSAAPENLTSSGRNLQ--ILLNQHLRRHDVIFCNVFDTIRKAADPALLVLD  417 (645)
Q Consensus       347 ~~~~el~~k~~~l-------~~~i~~~p~~~l~~lc~~md~~~L~--~~i~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd  417 (645)
                         ..+..+...+       .+.|...        ...|...-..  .-|+.+|..++   .    -|-  .+-|.|+|+
T Consensus       989 ---~~l~~q~~dl~~~~~~l~~~i~~l--------~~~~~~~f~~~f~~~~~~f~~~~---~----~l~--~~~~~l~~~ 1048 (1164)
T TIGR02169       989 ---DELKEKRAKLEEERKAILERIEEY--------EKKKREVFMEAFEAINENFNEIF---A----ELS--GGTGELILE 1048 (1164)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH---H----HHh--CCeEEEEec
Confidence               3444443333       3333222        1112211111  34566665544   2    222  566888887


Q ss_pred             hhcCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Q 039206          418 AMSGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLL  493 (645)
Q Consensus       418 ~~e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~~~~~~sl~al~fL~~l  493 (645)
                      ...++|.+|..    |+++.          ..-+..|                           ++|+.++.++||++.+
T Consensus      1049 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~l---------------------------Sgge~~~~~la~~~~~ 1091 (1164)
T TIGR02169      1049 NPDDPFAGGLELSAKPKGKP----------VQRLEAM---------------------------SGGEKSLTALSFIFAI 1091 (1164)
T ss_pred             CCCCcccCCeEEEEEcCCCC----------CCcchhc---------------------------CcchHHHHHHHHHHHH
Confidence            76666655431    11110          0001122                           7899999999999999


Q ss_pred             HhhcCCCCCChHHHHHHHHhhhccccch
Q 039206          494 AAYKLASAFDGNELASLLDIVANHRQTP  521 (645)
Q Consensus       494 a~ygi~~~f~~del~~l~~~v~~~~~~~  521 (645)
                      ..|.++|++=.||++..++.+.....+.
T Consensus      1092 ~~~~~~~~~~lDE~~~~ld~~~~~~~~~ 1119 (1164)
T TIGR02169      1092 QRYKPSPFYAFDEVDMFLDGVNVERVAK 1119 (1164)
T ss_pred             HhcCCCCcEEecccccccCHHHHHHHHH
Confidence            9999999999999999998876555443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.66  E-value=1.1e-12  Score=160.98  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=87.1

Q ss_pred             hHHHHHhhHHHHHHHHHHhhhhH----HhhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCCCCCchhhhhCC---hhHHHH
Q 039206          313 ELISVGKSIRQFEERVREFELRE----REFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSS---GRNLQI  385 (645)
Q Consensus       313 el~~v~~~i~~le~~~~eLE~~n----~e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~~~l~~lc~~md---~~~L~~  385 (645)
                      .+..+...|..+..++.++++++    .+|+.+...+    .+|.....+|...|...-..     ..+..   ..+ ..
T Consensus       966 ~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~----~dL~~~~~~L~~~i~~i~~~-----~~~~f~~~~~~-F~ 1035 (1179)
T TIGR02168       966 DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERY----DFLTAQKEDLTEAKETLEEA-----IEEIDREARER-FK 1035 (1179)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-HH
Confidence            45566677777777777777777    7777777777    56666666665555443000     01111   111 12


Q ss_pred             HHHHhhhhhhhhhhhhHHHHhhCCCchhhHhhhhcCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhh
Q 039206          386 LLNQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQV  461 (645)
Q Consensus       386 ~i~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd~~e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~v  461 (645)
                      -|+.||..++   ..++.-|-. -+-|.|.|+...+||..|..    +.++.          -..+.+|           
T Consensus      1036 ~v~~~f~~~F---~~lf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l----------- 1090 (1179)
T TIGR02168      1036 DTFDQVNENF---QRVFPKLFG-GGEAELRLTDPEDLLEAGIEIFAQPPGKK----------NQNLSLL----------- 1090 (1179)
T ss_pred             HHHHHHHHHH---HHHHHHHhC-CCeEEEEeCCCCcccccCceEEEeCCCCc----------ccccccc-----------
Confidence            3566666655   444444431 13367777766777666542    11100          0011122           


Q ss_pred             HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhcc
Q 039206          462 QGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANH  517 (645)
Q Consensus       462 ke~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~  517 (645)
                                      ++|....-++++.+.+..+++++.+=.||...-++.....
T Consensus      1091 ----------------S~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~ 1130 (1179)
T TIGR02168      1091 ----------------SGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVE 1130 (1179)
T ss_pred             ----------------CccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHH
Confidence                            6677777788887777778888887777777666654443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=3.5e-11  Score=139.08  Aligned_cols=153  Identities=14%  Similarity=0.176  Sum_probs=95.6

Q ss_pred             HHhhHHHHHHHHHHhhhhH---HhhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCCCCCchhhhhCChhHHH------HHH
Q 039206          317 VGKSIRQFEERVREFELRE---REFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQ------ILL  387 (645)
Q Consensus       317 v~~~i~~le~~~~eLE~~n---~e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~~~l~~lc~~md~~~L~------~~i  387 (645)
                      ++.+|......+..+-|.-   +.||+++  +..-..|.+-.++.-.-.-+.+         .+...+-..      .+|
T Consensus       934 L~~kl~e~~~~l~~~~Pn~kA~~~~d~v~--~~~~~~EfE~ark~ak~ak~~F---------~~VK~~R~~~F~~~F~~v 1002 (1141)
T KOG0018|consen  934 LQQKLEEKQSVLNRIAPNLKALERLDEVR--FQEINEEFEAARKEAKKAKNAF---------NKVKKKRYERFMACFEHV 1002 (1141)
T ss_pred             HHHHHHHHHHHHHHhCcchHHHhhhhhHH--HHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence            4444445555555554443   5666666  4444444444443322222233         333333333      344


Q ss_pred             HHhhhhhhhhhhhhHHHHhhCCCchhhHhhhhcCCCCCCCC----CCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHH
Q 039206          388 NQHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSR----EGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQG  463 (645)
Q Consensus       388 ~~~~ke~~~lr~e~~~AL~~a~dPa~LVLd~~e~~~~~~~~----~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke  463 (645)
                      ++|...+.   .++.    .+.+.|-|+||+.+.||..|.+    |..|-|          -=|++|             
T Consensus      1003 a~~Id~IY---K~Lt----nt~g~AyL~~en~~EPyl~GIky~~~pP~KRF----------r~m~~L------------- 1052 (1141)
T KOG0018|consen 1003 ADNIDRIY---KELT----NTEGQAYLGLENPEEPYLDGIKYHCMPPGKRF----------RPMDNL------------- 1052 (1141)
T ss_pred             HHHHHHHH---HHhc----ccccceeecCCCCCcchhcCccccccCCcccc----------Cchhhc-------------
Confidence            55544433   4444    4558899999999999998864    212221          113445             


Q ss_pred             HHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHH
Q 039206          464 EALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLR  524 (645)
Q Consensus       464 ~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~  524 (645)
                                    +||++.+.|||+||.+-+|.|+|+|-.|||+.-++...-.+.+.=.|
T Consensus      1053 --------------SGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr 1099 (1141)
T KOG0018|consen 1053 --------------SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR 1099 (1141)
T ss_pred             --------------CccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh
Confidence                          89999999999999999999999999999999999876666665444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=2e-09  Score=125.72  Aligned_cols=420  Identities=16%  Similarity=0.198  Sum_probs=241.1

Q ss_pred             HHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 039206           38 ETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCN---  112 (645)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~---  112 (645)
                      +.+++.+......+..+..++  +++++-.+|.++.   +++.++++......+....++-++..|...++...-..   
T Consensus       781 ~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~---~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~  857 (1293)
T KOG0996|consen  781 EKLERALSKMSDKARQHQEQLHELEERVRKLRERIP---ELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDK  857 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcH
Confidence            445566666667777777776  8899999999998   88888999999888888888888888888777732222   


Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206          113 FELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASI  191 (645)
Q Consensus       113 ~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel  191 (645)
                      +.+..+++.++.++.++++.+.+-.. +.++..+...|...+ +-++  + -+..++.+...|..++..|....-.|...
T Consensus       858 ~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q--~-qk~kv~~~~~~~~~l~~~i~k~~~~i~~s  933 (1293)
T KOG0996|consen  858 KRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQ--A-QKDKVEKINEQLDKLEADIAKLTVAIKTS  933 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhH--H-hHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence            23445556667777777776533333 667777777777666 2111  1 33444445445555555444443334444


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 039206          192 RAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKERE  271 (645)
Q Consensus       192 ~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E  271 (645)
                      ...|..++..+.++...+...+.+++.+..++..+..+..+++.++.+..+-+.+.++++..+..+++...+....+..+
T Consensus       934 ~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen  934 DRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAE 1013 (1293)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455555555555555666666666666666666666666666666666666666666666666666666666666663


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchh-------------hhHHHH--hH--HHHHhhHHHHHHHHHHh-hh
Q 039206          272 FCRIQERIEESSQELLLKENQLKSVLACIEDCSKE-------------DQVKEK--EL--ISVGKSIRQFEERVREF-EL  333 (645)
Q Consensus       272 ~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e-------------~~~ke~--el--~~v~~~i~~le~~~~eL-E~  333 (645)
                      .-.+...++....++.+.+..+..+.+.+..+..-             ....+.  ++  +.+.++|..++.++.++ ++
T Consensus      1014 rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~~v 1093 (1293)
T KOG0996|consen 1014 RIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREV 1093 (1293)
T ss_pred             hccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhcCC
Confidence            33355555555555555555555444332211110             000111  11  12566788899999999 44


Q ss_pred             hH---HhhHHHHHHHhhhhhhHHH---hHHhhHHHHhhCCCCCCchhhhhCChhHHHHHHHHhhhhhhhhhhhhHHHHhh
Q 039206          334 RE---REFDSLRKAVEDSSKNLEL---RQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRK  407 (645)
Q Consensus       334 ~n---~e~~~~~~~~~~~~~el~~---k~~~l~~~i~~~p~~~l~~lc~~md~~~L~~~i~~~~ke~~~lr~e~~~AL~~  407 (645)
                      -.   .+|.....-|.....+|+.   ++....+..+..   --..|-+=|.|-   .+|..++++.+.+=       - 
T Consensus      1094 d~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~L---rk~RldEFm~gf---~~Is~kLkemYQmI-------T- 1159 (1293)
T KOG0996|consen 1094 DLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEEL---RKRRLDEFMAGF---NIISMKLKEMYQMI-------T- 1159 (1293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHHHHHHHH-------h-
Confidence            33   5665544444333333322   111111000000   000111223332   45777777766221       1 


Q ss_pred             CCCchhhHhhhhcCCCCCCCCCCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHHHHHHHHHHHHhcc-ccCCchHHH
Q 039206          408 AADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGEALKVAVEWKKNME-DTVKDSLVV  486 (645)
Q Consensus       408 a~dPa~LVLd~~e~~~~~~~~~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~A~~lA~~WK~~i~-~~~~~sl~a  486 (645)
                      --+-|.|=|=---+||..|..     |.                ..+|.             ..||.--. +||++.|.-
T Consensus      1160 ~GGdAeLElVDslDPFseGV~-----FS----------------VrPpK-------------KSWK~I~NLSGGEKTLSS 1205 (1293)
T KOG0996|consen 1160 LGGDAELELVDSLDPFSEGVM-----FS----------------VRPPK-------------KSWKNISNLSGGEKTLSS 1205 (1293)
T ss_pred             cCCcceeEeeccCCCcccCce-----EE----------------eeCch-------------hhhhhcccCCcchhHHHH
Confidence            113344433333456666642     00                01111             34765433 688999999


Q ss_pred             HHHHHHHHhhcCCCCCChHHHHHHHH
Q 039206          487 LGFLHLLAAYKLASAFDGNELASLLD  512 (645)
Q Consensus       487 l~fL~~la~ygi~~~f~~del~~l~~  512 (645)
                      |||.|+|--|.|.|.|--|||+.-++
T Consensus      1206 LALVFALH~YkPTPlYVMDEIDAALD 1231 (1293)
T KOG0996|consen 1206 LALVFALHHYKPTPLYVMDEIDAALD 1231 (1293)
T ss_pred             HHHHHHHHccCCCCceehhhHHHhhc
Confidence            99999999999999999999996554

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=1.9e-09  Score=124.07  Aligned_cols=366  Identities=17%  Similarity=0.201  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhch
Q 039206           81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLK  160 (645)
Q Consensus        81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k  160 (645)
                      +.....++++..+++..+.+|++.+..+..+...+..++..|..-.   ..+.+++..++++|......++.....++  
T Consensus       737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~---~~re~rlkdl~keik~~k~~~e~~~~~~e--  811 (1174)
T KOG0933|consen  737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK---ANRERRLKDLEKEIKTAKQRAEESSKELE--  811 (1174)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3344555666666677777777777777777777766666655433   34556666677777777777666653232  


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          161 KEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY  240 (645)
Q Consensus       161 ~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l  240 (645)
                      + -....+-+..+.+.+++.+...+.++..+...++.+..++..+...+...+.......+++.....++..++.++..+
T Consensus       812 k-~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~  890 (1174)
T KOG0933|consen  812 K-RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGL  890 (1174)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence            1 123346677777777777777777777778888888888888888888888888888888888888888888888777


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhh
Q 039206          241 EDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKS  320 (645)
Q Consensus       241 r~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~  320 (645)
                      -...+....+......++..+..++..+.++.......++.+..+..=+..+-..+    -..-...+=...+..+...+
T Consensus       891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~f----gk~gt~yDf~~~~p~~are~  966 (1174)
T KOG0933|consen  891 LTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLF----GKKGTDYDFESYDPHEAREE  966 (1174)
T ss_pred             hhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhh----cCCCCccccccCCHhHHHHH
Confidence            77777777776666666666666666666666665555555555444444322211    11111111111133334445


Q ss_pred             HHHHHHHHHHhhhhH-----HhhHHHHHHHhhhhhhHHHhHHhh---HHHH-hhCCCCCCchhhhhCChhHH------HH
Q 039206          321 IRQFEERVREFELRE-----REFDSLRKAVEDSSKNLELRQKKL---SDIL-QLHPKRSAAPENLTSSGRNL------QI  385 (645)
Q Consensus       321 i~~le~~~~eLE~~n-----~e~~~~~~~~~~~~~el~~k~~~l---~~~i-~~~p~~~l~~lc~~md~~~L------~~  385 (645)
                      +.++......|+..-     .=++.++..+    .++..++.++   ...| ...         ++||-..=      |.
T Consensus       967 l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~----~~lk~k~~~Ie~Dk~kI~ktI---------~~lDe~k~~~L~kaw~ 1033 (1174)
T KOG0933|consen  967 LKKLQEKKEKLEKTVNPKNMDMLERAEEKE----AALKTKKEIIEKDKSKIKKTI---------EKLDEKKREELNKAWE 1033 (1174)
T ss_pred             HHHhhHHHHHHHhhcCHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence            555555555444322     2223333333    4444544443   0111 111         33443221      24


Q ss_pred             HHHHhhhhhhhhhhhhHHHHhh-CCCchhhHhhhhcCCCCCCCCCCcccchhhHhHHHHHHHHHhhhhcCCCCChhhHHH
Q 039206          386 LLNQHLRRHDVIFCNVFDTIRK-AADPALLVLDAMSGFYPPHSREGYVEFDVSIIRRTCILLLEQLSSLAPEINSQVQGE  464 (645)
Q Consensus       386 ~i~~~~ke~~~lr~e~~~AL~~-a~dPa~LVLd~~e~~~~~~~~~~~~~~~~~~~r~~cillLE~L~~~~p~i~~~vke~  464 (645)
                      -||..|-.++  ..=+|.|... .|-.++=|||-++--.                                         
T Consensus      1034 ~VN~dFG~IF--s~LLPga~AkL~Ppeg~~~~dGLEvkV----------------------------------------- 1070 (1174)
T KOG0933|consen 1034 KVNKDFGSIF--STLLPGAMAKLEPPEGKTVLDGLEVKV----------------------------------------- 1070 (1174)
T ss_pred             HHhhhHHHHH--HHhCCCccccccCCCCCccccceEEEE-----------------------------------------
Confidence            4555554444  1112222211 1111221221111000                                         


Q ss_pred             HHHHHHHHHHhcc--ccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhh
Q 039206          465 ALKVAVEWKKNME--DTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIV  514 (645)
Q Consensus       465 A~~lA~~WK~~i~--~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v  514 (645)
                        ++..-||..+.  +||.-||-||++++.+-.|.|+|.|=.||++.-+|..
T Consensus      1071 --~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLS 1120 (1174)
T KOG0933|consen 1071 --KFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLS 1120 (1174)
T ss_pred             --EeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcch
Confidence              12234888876  5788999999999999999999999999999877754

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=3.2e-08  Score=113.73  Aligned_cols=412  Identities=17%  Similarity=0.197  Sum_probs=220.8

Q ss_pred             hhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           42 RSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKE  119 (645)
Q Consensus        42 ~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~  119 (645)
                      ++.-+++-..+..+.++  ++..++..|+.+.   +...+|...-..+..............+.+..++..+..+...++
T Consensus       664 rsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~---~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~  740 (1200)
T KOG0964|consen  664 RSRLELLKNVNESRSELKELQESLDEVRNEIE---DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQ  740 (1200)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            33344555555666666  6666666777666   666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHH-HH--HHHHHHH
Q 039206          120 KELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQ-KA--SIRAMIE  196 (645)
Q Consensus       120 ~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~eke-ie--el~~eIE  196 (645)
                      ..+.-....++...-.+..++...+..+.++..-- -.++.|+..++.+.+..+|+.+...+..+..+ ++  .....++
T Consensus       741 ~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel-~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le  819 (1200)
T KOG0964|consen  741 ESLEPKGKELEEIKTSLHKLESQSNYFESELGSEL-FSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALE  819 (1200)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHH-HhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666665554322 12344778888888888888887777643333 11  1111111


Q ss_pred             -----HHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--
Q 039206          197 -----ACTEKLEAIEESYDA-----VKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKE--  264 (645)
Q Consensus       197 -----~~e~ei~e~~e~ie~-----le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~e--  264 (645)
                           .+.-++.++..++.+     ...+++..+.++.....++...-.+++.+++..+....++..+++.++.+..-  
T Consensus       820 ~~l~~kL~~r~~~l~~ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek  899 (1200)
T KOG0964|consen  820 ANLNTKLYKRVNELEQEIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEK  899 (1200)
T ss_pred             HHHHHHHHhhhhHHHHHhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 122222222222222     23445556666666666666666777777777777777766666665554422  


Q ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhch---h-hhH-HHHhHHHHHhhHHHHHHHH
Q 039206          265 -----------LELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK---E-DQV-KEKELISVGKSIRQFEERV  328 (645)
Q Consensus       265 -----------le~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~---e-~~~-ke~el~~v~~~i~~le~~~  328 (645)
                                 ++...+....|..+.+           +   .-+.|.++..   + +.. .......+..++.++-.++
T Consensus       900 ~~~~~~~~dKe~Ek~~~rk~~Ll~Kre-----------E---~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neel  965 (1200)
T KOG0964|consen  900 EKKDNINFDKELEKLVRRKHMLLKKRE-----------E---CCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEEL  965 (1200)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHH-----------H---HHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHH
Confidence                       1222222222222111           1   1111111100   0 000 1114566777888888889


Q ss_pred             HHhhhhH----H-------hhHHHHHHHhhhhhhHHHhHHhhHHHHhhCCCCCCchhhhhCChhHHHHHHHHhhhhhhhh
Q 039206          329 REFELRE----R-------EFDSLRKAVEDSSKNLELRQKKLSDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVI  397 (645)
Q Consensus       329 ~eLE~~n----~-------e~~~~~~~~~~~~~el~~k~~~l~~~i~~~p~~~l~~lc~~md~~~L~~~i~~~~ke~~~l  397 (645)
                      ..+..||    +       +.+++..|.    .+|.--++...+.|.-....    --+.||.  -.+-|..||++++  
T Consensus       966 k~ys~VNKkAldQf~nfseQre~L~~R~----eELd~s~~sI~eLi~vLdqr----K~eai~~--TFkqV~knFsevF-- 1033 (1200)
T KOG0964|consen  966 KGYSNVNKKALDQFVNFSEQRESLKKRQ----EELDRSKDSILELITVLDQR----KYEAIDL--TFKQVKKNFSEVF-- 1033 (1200)
T ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHHHH----HHhccchhHHHHHHHHHHHh----hHHHHHH--HHHHHHHHHHHHH--
Confidence            9999998    2       334455444    33333333332222111000    0022221  2255788888877  


Q ss_pred             hhhhHHHHhhCC-CchhhHhhhhc---------CCCCCCCCCCcccc-----hhhH-----hHHHHHHHHHhhhhcCCCC
Q 039206          398 FCNVFDTIRKAA-DPALLVLDAMS---------GFYPPHSREGYVEF-----DVSI-----IRRTCILLLEQLSSLAPEI  457 (645)
Q Consensus       398 r~e~~~AL~~a~-dPa~LVLd~~e---------~~~~~~~~~~~~~~-----~~~~-----~r~~cillLE~L~~~~p~i  457 (645)
                       .      ++.| +.|.+|...=.         |-+.+.+.. ++++     +..+     ....=-+.|++|       
T Consensus      1034 -~------~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~-~~~sv~~ytGIsI~VSFnskq~E~~~m~QL------- 1098 (1200)
T KOG0964|consen 1034 -S------RLVPGGTALIIMRKRDNANDHDEDDGDMDGESNE-GKDSVEMYTGISIKVSFNSKQGETLEMEQL------- 1098 (1200)
T ss_pred             -H------HhCCCCceeehhhccccccccccccccccccccc-cccchhhccceeEEEEeecCccHHHHHHHh-------
Confidence             4      6666 45655553322         111111100 0000     0000     011124455566       


Q ss_pred             ChhhHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhccccc
Q 039206          458 NSQVQGEALKVAVEWKKNMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANHRQT  520 (645)
Q Consensus       458 ~~~vke~A~~lA~~WK~~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~  520 (645)
                                          +||.+++-|+++++.++.-.|||+|=.|||+.-++.  +|+.+
T Consensus      1099 --------------------SGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDa--QyR~a 1139 (1200)
T KOG0964|consen 1099 --------------------SGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDA--QYRTA 1139 (1200)
T ss_pred             --------------------cCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccH--HHHHH
Confidence                                899999999999999999999999999999988875  44444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.34  E-value=1.8e-08  Score=124.36  Aligned_cols=104  Identities=14%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE  114 (645)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e  114 (645)
                      -+.+...+..+..+...+..++  ++..+..++..+.   .+..++...+..++....++..+...+..++..+..+..+
T Consensus       683 l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~---~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~e  759 (1164)
T TIGR02169       683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG---EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE  759 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777666  6667766666666   5666666666666666666666666666666666666555


Q ss_pred             HHHHHHHHHHHHHHHhHhHHHHhhHHHHH
Q 039206          115 LACKEKELGFVRKRIGVCNSELQSKEDEL  143 (645)
Q Consensus       115 ~~~~~~el~~l~~~i~e~~~el~~le~eL  143 (645)
                      +.....++..+...+.....++..++..+
T Consensus       760 l~~l~~~i~~l~~~i~~l~~el~~l~~~~  788 (1164)
T TIGR02169       760 LKELEARIEELEEDLHKLEEALNDLEARL  788 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555544433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.33  E-value=2e-08  Score=123.75  Aligned_cols=275  Identities=21%  Similarity=0.286  Sum_probs=114.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhh
Q 039206           78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRL  157 (645)
Q Consensus        78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~l  157 (645)
                      .++......+..+...+..+..+++.++.++..+..++.....++..+...+......+..++..+..+..++......+
T Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~  798 (1179)
T TIGR02168       719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL  798 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333344444444443434444444444444443333333333333333333333322222111


Q ss_pred             hchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          158 NLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL  237 (645)
Q Consensus       158 e~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El  237 (645)
                      .   ++..++.+++.++..+..++.....++..+..++..+..++.....++..+...+......+..++..+.++..++
T Consensus       799 ~---~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  875 (1179)
T TIGR02168       799 K---ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL  875 (1179)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            1   1333333444444444444433333333444444444444444444444433333333333333444444444444


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHH-H---Hh
Q 039206          238 RLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVK-E---KE  313 (645)
Q Consensus       238 ~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~k-e---~e  313 (645)
                      ..+..++..+..++..+...+.....++.....++..+...+..+..++..+..++..+...+.+....+... .   .+
T Consensus       876 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~  955 (1179)
T TIGR02168       876 EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEE  955 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence            4444444444444434433344444444333333333333344444444444433333333333211111100 0   01


Q ss_pred             HHH----HHhhHHHHHHHHHHhhhhHHhhHHHH----HHHhhhhhhHHHhHHhh
Q 039206          314 LIS----VGKSIRQFEERVREFELREREFDSLR----KAVEDSSKNLELRQKKL  359 (645)
Q Consensus       314 l~~----v~~~i~~le~~~~eLE~~n~e~~~~~----~~~~~~~~el~~k~~~l  359 (645)
                      ...    +...+..+...+..|++..++|+++.    .++    ..+..+...|
T Consensus       956 ~~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~----~~l~~q~~dL 1005 (1179)
T TIGR02168       956 AEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEY----EELKERYDFL 1005 (1179)
T ss_pred             HHhhccccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHH----HHHHHHHHHH
Confidence            111    35567788888888888778887777    666    4555544444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.33  E-value=5e-08  Score=117.57  Aligned_cols=38  Identities=13%  Similarity=0.099  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHH
Q 039206          109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV  146 (645)
Q Consensus       109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~l  146 (645)
                      +.+...+...+.+++.+...+......+...+..++..
T Consensus       408 ~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~  445 (880)
T PRK02224        408 GNAEDFLEELREERDELREREAELEATLRTARERVEEA  445 (880)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444333333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.30  E-value=3.6e-08  Score=118.84  Aligned_cols=20  Identities=15%  Similarity=0.170  Sum_probs=9.7

Q ss_pred             hHHHHHhhhcchHhhhhhHH
Q 039206           36 KKETLRRSFDLPHEQLGLFT   55 (645)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~   55 (645)
                      +++.+...+.+++..+....
T Consensus       315 ~~~~l~~k~~el~~~l~~~~  334 (880)
T PRK02224        315 RREELEDRDEELRDRLEECR  334 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.12  E-value=2.5e-06  Score=105.75  Aligned_cols=234  Identities=23%  Similarity=0.310  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-hhhhchHHHHHHHHHhHHHHHH
Q 039206           98 ESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-KRLNLKKEKQKRLESLDGEVRE  176 (645)
Q Consensus        98 ~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-~~le~k~el~~~ieei~~eI~~  176 (645)
                      ..++......++.+...+...+.+++.+...+.....++..++.++.++..++.... ..+.    ++..+.++.+++..
T Consensus       231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~le~~~~~  306 (1163)
T COG1196         231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE----LKEEIEELEGEISL  306 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            356666666777777777777777777777777777777777777777777776664 2122    55567777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 039206          177 SEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR----LYEDNLQSLQSTVR  252 (645)
Q Consensus       177 ~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~----~lr~e~e~l~eel~  252 (645)
                      +..++.....++......+..++.++......+................+.....+.+....    ..........+++.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  386 (1163)
T COG1196         307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA  386 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            77777766666555555555555555555554444422222222222222222222222222    22223333333444


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhh
Q 039206          253 LRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFE  332 (645)
Q Consensus       253 ~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE  332 (645)
                      .+..++.....+++.+..+++.+..++.++...++.+..++.+...++.+...++.....++..+...++.+...+.+++
T Consensus       387 ~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (1163)
T COG1196         387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE  466 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hhH
Q 039206          333 LRE  335 (645)
Q Consensus       333 ~~n  335 (645)
                      ..-
T Consensus       467 ~~~  469 (1163)
T COG1196         467 REL  469 (1163)
T ss_pred             HHH
Confidence            444

>TIGR00606 rad50 rad50

Probab=99.03  E-value=2.2e-05  Score=98.71  Aligned_cols=104  Identities=20%  Similarity=0.289  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-------hhhhchHHHHHHHHHhHHHHHHHHHHH
Q 039206          109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-------KRLNLKKEKQKRLESLDGEVRESEKEL  181 (645)
Q Consensus       109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-------~~le~k~el~~~ieei~~eI~~~e~~i  181 (645)
                      ++++.++..+..++..+...++....+...++.+|..+...+...+       ..+..++.+..+++++..++..+...|
T Consensus       825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~  904 (1311)
T TIGR00606       825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREI  904 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555444445555555555555533333222       334444567777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          182 VLMKEQKASIRAMIEACTEKLEAIEESYDAV  212 (645)
Q Consensus       182 e~~ekeieel~~eIE~~e~ei~e~~e~ie~l  212 (645)
                      ..++.++..+...++.+..+..++.......
T Consensus       905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  935 (1311)
T TIGR00606       905 KDAKEQDSPLETFLEKDQQEKEELISSKETS  935 (1311)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766666666666665555544443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.96  E-value=7.2e-05  Score=88.47  Aligned_cols=40  Identities=15%  Similarity=0.088  Sum_probs=35.5

Q ss_pred             ccCCchHHHHHHHHHHHhhcCCCCCChHHHHHHHHhhhcc
Q 039206          478 DTVKDSLVVLGFLHLLAAYKLASAFDGNELASLLDIVANH  517 (645)
Q Consensus       478 ~~~~~sl~al~fL~~la~ygi~~~f~~del~~l~~~v~~~  517 (645)
                      +||+.|....+||+.|-.--=.|+.-.||.+-|.|+|.+.
T Consensus       991 SGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRK 1030 (1074)
T KOG0250|consen  991 SGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRK 1030 (1074)
T ss_pred             CcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHH
Confidence            6889999999999999888888999999999888888654

>TIGR00606 rad50 rad50

Probab=98.96  E-value=2.2e-05  Score=98.57  Aligned_cols=170  Identities=11%  Similarity=0.024  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhh
Q 039206           85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV------RKRIGVCNSELQSKEDELNLVKNSAEKWPKRLN  158 (645)
Q Consensus        85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l------~~~i~e~~~el~~le~eL~~le~ei~~~~~~le  158 (645)
                      ..+..+...+..++.++..++..++++...+.....+++.+      -..|+....++..++..|..++.+....+... 
T Consensus       744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~-  822 (1311)
T TIGR00606       744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR-  822 (1311)
T ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-
Confidence            33444444444444444444444444444444444444333      22345557777777777777777666444210 


Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206          159 LKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE----------AIEESYDAVKAKLESEKRELELTQT  228 (645)
Q Consensus       159 ~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~----------e~~e~ie~le~eIee~e~ELeel~~  228 (645)
                      .-.++..++..++.+++.+...++.+..+.+.++.+|..++.++.          ........++..++++..++..+..
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112455666666666666655555544444444444444422222          2222333334444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          229 FMKDLLVKLRLYEDNLQSLQSTVRLRE  255 (645)
Q Consensus       229 ~i~ele~El~~lr~e~e~l~eel~~~~  255 (645)
                      .+.+++.++..+...+..+..++..+.
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  929 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEELI  929 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            444444444444444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.94  E-value=1.7e-05  Score=99.83  Aligned_cols=206  Identities=17%  Similarity=0.219  Sum_probs=91.9

Q ss_pred             CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206           75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP  154 (645)
Q Consensus        75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~  154 (645)
                      .+...++....+++....+-..++.+....+.++.++.+.+++++..+.++..+......++..+++++..++..+....
T Consensus       905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~  984 (1930)
T KOG0161|consen  905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS  984 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555554444444444444445555555555555555555555554444444444444444444433332


Q ss_pred             hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          155 KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLL  234 (645)
Q Consensus       155 ~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele  234 (645)
                      .   .++++...+.++...+...+.....+.+....+...++.++..+........+++.....++.++...+..+.++.
T Consensus       985 k---ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~ 1061 (1930)
T KOG0161|consen  985 K---EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELK 1061 (1930)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            1   1233444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          235 VKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESS  283 (645)
Q Consensus       235 ~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~  283 (645)
                      .....+..++.....++..+..+++.....+..++..+..+..++..+.
T Consensus      1062 ~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~ 1110 (1930)
T KOG0161|consen 1062 KQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE 1110 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444333333333333333333333333333333333

>PRK01156 chromosome segregation protein; Provisional

Probab=98.91  E-value=3e-05  Score=94.03  Aligned_cols=33  Identities=6%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             hHHHHHhhHHHHHHHHHHhhhhHHhhHHHHHHH
Q 039206          313 ELISVGKSIRQFEERVREFELREREFDSLRKAV  345 (645)
Q Consensus       313 el~~v~~~i~~le~~~~eLE~~n~e~~~~~~~~  345 (645)
                      .+..+..++..+...+.+++....+|.++...+
T Consensus       523 ~~~~l~~~l~~~~~~l~~le~~~~~~~~l~~~~  555 (895)
T PRK01156        523 KIESARADLEDIKIKINELKDKHDKYEEIKNRY  555 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666555

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.90  E-value=2.5e-05  Score=91.61  Aligned_cols=266  Identities=16%  Similarity=0.210  Sum_probs=121.7

Q ss_pred             HHHhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcC---CchHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           28 VELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQS---SSSIDVDMKIRLLDERAKEIENKESELV  102 (645)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~---~~~~~v~~~~~~~ee~~~~~e~~~~eie  102 (645)
                      ..|+++..--+++..++..|++++ -...++  +..+++.......--.   -+..++.++..+.+....+++.+.+.++
T Consensus        60 ~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE  138 (775)
T PF10174_consen   60 EQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLE  138 (775)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666677777777777776 333333  3333333332222000   1223444444455555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------HhHHHHhhHHHHHHHHHHhhhhchhhh------------
Q 039206          103 LVEKKIKDCNFELACKEKELGFVRKRIG-------------VCNSELQSKEDELNLVKNSAEKWPKRL------------  157 (645)
Q Consensus       103 ~~e~~lee~~~e~~~~~~el~~l~~~i~-------------e~~~el~~le~eL~~le~ei~~~~~~l------------  157 (645)
                      ..+..++.+...+....+++..+...+.             ...+.+...+..+..++.-++.++.+.            
T Consensus       139 ~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~  218 (775)
T PF10174_consen  139 ELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQ  218 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Confidence            5555555555555555555555544431             122234444455555555555554222            


Q ss_pred             -hchH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039206          158 -NLKK----EKQKRLESLDGEVRESEKELVLMKEQKASIR--------------AMIEACTEKLEAIEESYDAVKAKLES  218 (645)
Q Consensus       158 -e~k~----el~~~ieei~~eI~~~e~~ie~~ekeieel~--------------~eIE~~e~ei~e~~e~ie~le~eIee  218 (645)
                       .-.|    -+..-|+.....|..+++.++.++.+|..++              .+++.....-...+.+++.+..++..
T Consensus       219 ~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~r  298 (775)
T PF10174_consen  219 MERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSR  298 (775)
T ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence             1111    1334456666666666666666555554222              23333333333334344444444444


Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          219 EKRELELTQTFMKDL-------LVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKEN  291 (645)
Q Consensus       219 ~e~ELeel~~~i~el-------e~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~  291 (645)
                      +..++..++.++..+       ...|..++..+.....+...++.+++.++.++++....++.....+.....+......
T Consensus       299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~  378 (775)
T PF10174_consen  299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQG  378 (775)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444433       3344444444444444444444444444444444444444444444333333333333


Q ss_pred             hHH
Q 039206          292 QLK  294 (645)
Q Consensus       292 el~  294 (645)
                      ++.
T Consensus       379 Ei~  381 (775)
T PF10174_consen  379 EIE  381 (775)
T ss_pred             HHH
Confidence            333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.89  E-value=5.4e-05  Score=95.44  Aligned_cols=41  Identities=29%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHhhhhcCCCCChhh---HHHHHHHHHHHHHhccccC
Q 039206          439 IRRTCILLLEQLSSLAPEINSQV---QGEALKVAVEWKKNMEDTV  480 (645)
Q Consensus       439 ~r~~cillLE~L~~~~p~i~~~v---ke~A~~lA~~WK~~i~~~~  480 (645)
                      .+.-|-.|-++|-.- ...-...   --+|..-+..|+.++...+
T Consensus      1327 l~~e~~~l~e~leee-~e~~~~l~r~lsk~~~e~~~~~~k~e~~~ 1370 (1930)
T KOG0161|consen 1327 LEHELDLLREQLEEE-QEAKNELERKLSKANAELAQWKKKFEEEV 1370 (1930)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455676676666320 0011111   1234555778999987543

>PRK01156 chromosome segregation protein; Provisional

Probab=98.89  E-value=0.00023  Score=86.33  Aligned_cols=13  Identities=15%  Similarity=0.141  Sum_probs=5.0

Q ss_pred             HHHHHHHHHhhhh
Q 039206           59 IQELFDLTMKSLE   71 (645)
Q Consensus        59 ~e~~~~~~r~~~~   71 (645)
                      +...+.++...+.
T Consensus       368 l~~~l~~~~~~~~  380 (895)
T PRK01156        368 YLKSIESLKKKIE  380 (895)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PRK03918 chromosome segregation protein; Provisional

Probab=98.85  E-value=5.9e-05  Score=91.16  Aligned_cols=13  Identities=15%  Similarity=0.038  Sum_probs=4.8

Q ss_pred             HhHHHHHHHHHHH
Q 039206           78 IDVDMKIRLLDER   90 (645)
Q Consensus        78 ~~v~~~~~~~ee~   90 (645)
                      .++..++.+++.+
T Consensus       207 ~ei~~l~~e~~~l  219 (880)
T PRK03918        207 REINEISSELPEL  219 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.84  E-value=2.7e-06  Score=87.30  Aligned_cols=117  Identities=15%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhch
Q 039206           81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLK  160 (645)
Q Consensus        81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k  160 (645)
                      ..++..++....++......+..+++..++.++.+..++........+|+.+...+..........+....         
T Consensus        46 ~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~---------  116 (237)
T PF00261_consen   46 QLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYE---------  116 (237)
T ss_dssp             HHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            33333333333333333344444444444444444444444444444444433333333333333333222         


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          161 KEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEE  207 (645)
Q Consensus       161 ~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e  207 (645)
                       ++.+++..+.+.+.+++.+.+..+..+..+..++....+.+..+..
T Consensus       117 -E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen  117 -EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             -HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence             1333444444444444444444444444444444444444333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.79  E-value=7.8e-05  Score=85.96  Aligned_cols=132  Identities=16%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 039206          223 LELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIED  302 (645)
Q Consensus       223 Leel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~  302 (645)
                      ...+...+.++.+.+..+..........+..+...++...++++.+..+...+...+..+.....+.+..+..++..+.+
T Consensus       350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~  429 (569)
T PRK04778        350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE  429 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444445555555666666666666666666666666666666666666666666665


Q ss_pred             hchhhhH---------HHHhHHHHHhhHHHHHHHHHHhhhhH-----HhhHHHHHHHhhhhhhHHHhHHhh
Q 039206          303 CSKEDQV---------KEKELISVGKSIRQFEERVREFELRE-----REFDSLRKAVEDSSKNLELRQKKL  359 (645)
Q Consensus       303 ~~~e~~~---------ke~el~~v~~~i~~le~~~~eLE~~n-----~e~~~~~~~~~~~~~el~~k~~~l  359 (645)
                      ....+..         .-..+..+...+..+...+.. +|+|     .+|+++..++    ..|..+...+
T Consensus       430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~----~~L~~q~~dL  495 (569)
T PRK04778        430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDV----ETLEEETEEL  495 (569)
T ss_pred             HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            5544333         112566788999999999999 9999     4888898888    5555554444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.74  E-value=6.2e-05  Score=89.04  Aligned_cols=184  Identities=17%  Similarity=0.300  Sum_probs=82.8

Q ss_pred             HhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039206          136 LQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAK  215 (645)
Q Consensus       136 l~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~e  215 (645)
                      +.....++.+.+.+|...+.   -.+.+++++++..+.++....++       .+.+..+..+..+......+++...+.
T Consensus       276 V~~~~~ql~~~~~~i~~~qe---k~~~l~~ki~~~~~k~~~~r~k~-------teiea~i~~~~~e~~~~d~Ei~~~r~~  345 (1074)
T KOG0250|consen  276 VNEVERQLNNQEEEIKKKQE---KVDTLQEKIEEKQGKIEEARQKL-------TEIEAKIGELKDEVDAQDEEIEEARKD  345 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            33444555555555544331   01234444444444444444333       333344444444444444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039206          216 LESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKS  295 (645)
Q Consensus       216 Iee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~  295 (645)
                      +...+.+...++..+.+....+..++..++.+.+.+..+.++.      -+++..++......++.+..+++.++.++.+
T Consensus       346 ~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~------~~~~~~~~~e~e~k~~~L~~evek~e~~~~~  419 (1074)
T KOG0250|consen  346 LDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT------NNELGSELEERENKLEQLKKEVEKLEEQINS  419 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555544443333      0333334444444444444444444444444


Q ss_pred             HHHhhhhhchhhhHHHH-------hHHHHHhhHHHHHHHHHHhhhhH
Q 039206          296 VLACIEDCSKEDQVKEK-------ELISVGKSIRQFEERVREFELRE  335 (645)
Q Consensus       296 ~~~~i~~~~~e~~~ke~-------el~~v~~~i~~le~~~~eLE~~n  335 (645)
                      +++++..+..++...+.       .+..+...|......+++|...+
T Consensus       420 L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k  466 (1074)
T KOG0250|consen  420 LREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK  466 (1074)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444444444444333       44444444445544555554443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=0.00014  Score=86.33  Aligned_cols=97  Identities=21%  Similarity=0.203  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhch
Q 039206          226 TQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK  305 (645)
Q Consensus       226 l~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~  305 (645)
                      ....+..+++++..+-.++.....+++-++++++-+....+...+.++.+..++...+..+.+....+.+.+..|+.++-
T Consensus       477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~  556 (1293)
T KOG0996|consen  477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ  556 (1293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            34445555555666666666666666666666666666666666666666666666666666666666666666655555


Q ss_pred             hhhHHHHhHHHHHhhHH
Q 039206          306 EDQVKEKELISVGKSIR  322 (645)
Q Consensus       306 e~~~ke~el~~v~~~i~  322 (645)
                      ++...+.++........
T Consensus       557 e~~~~~k~l~~~~~e~~  573 (1293)
T KOG0996|consen  557 ELKEKEKELPKLRKEER  573 (1293)
T ss_pred             HHHHHHHhHHHHHHHHH
Confidence            55555544444444333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.69  E-value=0.00056  Score=80.53  Aligned_cols=131  Identities=23%  Similarity=0.331  Sum_probs=67.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          164 QKRLESLDGEVRESEKELVLMK-------EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVK  236 (645)
Q Consensus       164 ~~~ieei~~eI~~~e~~ie~~e-------keieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~E  236 (645)
                      +.+++..+.++.+....|..+.       .+-.+.+.-|+-+...+.....+.+-+..+++.++.+++.....+..-...
T Consensus       286 K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~  365 (775)
T PF10174_consen  286 KSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ  365 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554444333       332244555555555555555555556556665555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 039206          237 LRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIE  301 (645)
Q Consensus       237 l~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~  301 (645)
                      +..+..+......+       +..+...+...++++..+..+++.+...+.+...++...+..+.
T Consensus       366 ~~~~qeE~~~~~~E-------i~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~  423 (775)
T PF10174_consen  366 IEKLQEEKSRLQGE-------IEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS  423 (775)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555555555       44444444444444444444444444444555555555544444

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.63  E-value=0.0014  Score=73.86  Aligned_cols=43  Identities=19%  Similarity=0.164  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL  237 (645)
Q Consensus       195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El  237 (645)
                      ...+..++.++....+-..+++...+-+.+.+..++.+...++
T Consensus       306 ~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l  348 (546)
T PF07888_consen  306 AELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL  348 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            3333333333333333334444444444444444444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.62  E-value=0.00035  Score=74.31  Aligned_cols=46  Identities=11%  Similarity=0.029  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKK  107 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~  107 (645)
                      .+.++.++|..+.   ++..+-...+.+++.+..+++.+...++...+.
T Consensus        52 ye~el~~lr~~id---~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~   97 (312)
T PF00038_consen   52 YEEELRELRRQID---DLSKEKARLELEIDNLKEELEDLRRKYEEELAE   97 (312)
T ss_dssp             HHHHHHCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhHHhhh---hHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5555555555555   444554444444444444444444444433333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.56  E-value=0.002  Score=73.75  Aligned_cols=47  Identities=13%  Similarity=-0.006  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHH
Q 039206          281 ESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEER  327 (645)
Q Consensus       281 ~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~  327 (645)
                      .+..++..+.-.+.+.|-+.++++..+...+...+.+..+...+...
T Consensus       327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~  373 (1265)
T KOG0976|consen  327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEK  373 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHH
Confidence            34455566666666666666666666665555555555444444433

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.56  E-value=0.0018  Score=72.31  Aligned_cols=200  Identities=15%  Similarity=0.148  Sum_probs=102.2

Q ss_pred             HHhhhcchHhhhhhHHHHH-----HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           40 LRRSFDLPHEQLGLFTAQW-----IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE  114 (645)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~-----~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e  114 (645)
                      ...+++.+......|..++     ..+.+.++|.++.   ++..++.+.+.-+......-....+.++.+..++++-+.+
T Consensus       233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~---~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE  309 (581)
T KOG0995|consen  233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKA---RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEE  309 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH---HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555     5667777777777   7777777766666555444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHH----------HhHhHHHHhhHHHHHHHHHHhhhhchh-hhhchHHHHHHHHHhHHHHHHHHHHHHH
Q 039206          115 LACKEKELGFVRKR----------IGVCNSELQSKEDELNLVKNSAEKWPK-RLNLKKEKQKRLESLDGEVRESEKELVL  183 (645)
Q Consensus       115 ~~~~~~el~~l~~~----------i~e~~~el~~le~eL~~le~ei~~~~~-~le~k~el~~~ieei~~eI~~~e~~ie~  183 (645)
                      ++.++.+.+.++.-          ++..+.+...+..+|+.++.++..... --+++-++...++++......+..-+..
T Consensus       310 ~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~  389 (581)
T KOG0995|consen  310 IEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRR  389 (581)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444433          344455555555555555555554441 1111222333334433333222222221


Q ss_pred             ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206          184 ---------------------------------MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFM  230 (645)
Q Consensus       184 ---------------------------------~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i  230 (645)
                                                       +....+++++++-..++++..++..+.++...|.++...+..++.++
T Consensus       390 i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el  469 (581)
T KOG0995|consen  390 IKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELEL  469 (581)
T ss_pred             HHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                             12223355555666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHH
Q 039206          231 KDLLVKLRLYED  242 (645)
Q Consensus       231 ~ele~El~~lr~  242 (645)
                      ..+++.+...+.
T Consensus       470 ~~~~~~~~~~k~  481 (581)
T KOG0995|consen  470 KKAESKYELKKE  481 (581)
T ss_pred             HHHHHHHHHHHH
Confidence            666555555544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.53  E-value=0.0016  Score=73.42  Aligned_cols=170  Identities=16%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHH
Q 039206          190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENEL----ECKEKEL  265 (645)
Q Consensus       190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~el----e~~~~el  265 (645)
                      ....+.+.+.+.++....++...+.+..-+..+|......-...-.++...+-+-+.+...+......+    .....+.
T Consensus       280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk  359 (546)
T PF07888_consen  280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEK  359 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555556666666666666666666666666666655555555555555544444443333332222    2222333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHH----HhHHHHHhhHHHHHHHHHHhhhhHHhhHHH
Q 039206          266 ELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKE----KELISVGKSIRQFEERVREFELREREFDSL  341 (645)
Q Consensus       266 e~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke----~el~~v~~~i~~le~~~~eLE~~n~e~~~~  341 (645)
                      ..++.......+++..++.++..++.-+.+-+.+-..+..+++...    +.+.+....+..+...++=+....+++-.-
T Consensus       360 ~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~E  439 (546)
T PF07888_consen  360 QALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEE  439 (546)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344445555555555555555444444444444444311    144455555555555554444444444333


Q ss_pred             HHHHhhhhhhHHHhHHhh
Q 039206          342 RKAVEDSSKNLELRQKKL  359 (645)
Q Consensus       342 ~~~~~~~~~el~~k~~~l  359 (645)
                      ++-+..+..-|+.+-+++
T Consensus       440 kQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  440 KQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            333333335555554444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.52  E-value=0.001  Score=69.45  Aligned_cols=88  Identities=15%  Similarity=0.214  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          209 YDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLL  288 (645)
Q Consensus       209 ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e  288 (645)
                      +..+.++++..+.+..++..++.++..+..++.+++-...++.+.++++.+..-.++-......+.+...+.....++.+
T Consensus       160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre  239 (294)
T COG1340         160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRE  239 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555555555555555544444433333333333333333333333333344444444444


Q ss_pred             HHHhHHHH
Q 039206          289 KENQLKSV  296 (645)
Q Consensus       289 ~e~el~~~  296 (645)
                      +...+..+
T Consensus       240 ~~k~ik~l  247 (294)
T COG1340         240 LEKKIKAL  247 (294)
T ss_pred             HHHHHHHH
Confidence            44444333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.48  E-value=0.0026  Score=72.63  Aligned_cols=14  Identities=29%  Similarity=0.446  Sum_probs=7.0

Q ss_pred             hhHHHhHHHHhHHH
Q 039206           26 VLVELRVAELKKET   39 (645)
Q Consensus        26 ~~~~~~~~~~~~~~   39 (645)
                      .+..+++.++.+..
T Consensus        93 e~~k~r~~e~e~~~  106 (522)
T PF05701_consen   93 ELAKFRAKELEQGI  106 (522)
T ss_pred             HHhHHHHHHHhhhh
Confidence            34455555555443

Several sequences in this family are described as being myosin heavy chain-like.

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.46  E-value=0.0001  Score=84.58  Aligned_cols=71  Identities=11%  Similarity=0.135  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          223 LELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL  293 (645)
Q Consensus       223 Leel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el  293 (645)
                      +..+..++.++...+...+..+.+...+...++.+++.+.........++..+...+.....++.+...+.
T Consensus       332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~  402 (562)
T PHA02562        332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK  402 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.44  E-value=0.0027  Score=66.29  Aligned_cols=56  Identities=14%  Similarity=0.150  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206           96 NKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus        96 ~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      .+-.+..+....+.++...+..+-.++..++...++.+..+..+-.++..+...++
T Consensus        45 eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          45 ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33334444444455555555555555555555555555555555555555555555

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.42  E-value=0.0067  Score=70.13  Aligned_cols=19  Identities=11%  Similarity=0.043  Sum_probs=13.6

Q ss_pred             HHhHHHHHhhhcchHhhhh
Q 039206           34 ELKKETLRRSFDLPHEQLG   52 (645)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~   52 (645)
                      =+-+.++.+.++.|+.+-.
T Consensus        21 ~~~rr~~~~~i~~Le~~k~   39 (569)
T PRK04778         21 LILRKRNYKRIDELEERKQ   39 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4556777788888877765

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.41  E-value=0.0035  Score=66.73  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          235 VKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL  293 (645)
Q Consensus       235 ~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el  293 (645)
                      .++..++.........+...+.++...+..++.+..++..+......+...+.+++..+
T Consensus       195 ~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~  253 (312)
T PF00038_consen  195 SKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL  253 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence            34444444444444444444444555555555555555555555555555555554444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.38  E-value=0.017  Score=70.36  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=27.3

Q ss_pred             ccCCchHHHHHHHHHHHhhc-------------CCCCCChHHHHHHHHhhhccccchHHHhhhCCCCCcchhh
Q 039206          478 DTVKDSLVVLGFLHLLAAYK-------------LASAFDGNELASLLDIVANHRQTPKLRRSLGFADEVPVMH  537 (645)
Q Consensus       478 ~~~~~sl~al~fL~~la~yg-------------i~~~f~~del~~l~~~v~~~~~~~~L~~~lgl~~ki~~~v  537 (645)
                      +||+.-+.+++|=+.|+-|-             |-+..|.+-+..+++++-.....   .+.+|.+-+++.|.
T Consensus       817 SGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~  886 (908)
T COG0419         817 SGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD---GRQIIIISHVEELK  886 (908)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence            56665555555544444332             22344666666666554332222   33445555555444

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.37  E-value=0.0041  Score=73.22  Aligned_cols=37  Identities=30%  Similarity=0.464  Sum_probs=29.3

Q ss_pred             HHHHhhhh--hhhchhhHHHHHHHHHHhCCCCCCChhhH
Q 039206          562 EWKEKMRA--AVENSLEVLGLLHLLGAFRLAPAFDGNEL  598 (645)
Q Consensus       562 ~wk~~~~~--~~~~~lea~~~L~~I~~y~L~s~f~~d~L  598 (645)
                      .||.++..  +++.||-|++.|--+=.|+=.|-|-.|++
T Consensus      1075 iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEV 1113 (1174)
T KOG0933|consen 1075 IWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEV 1113 (1174)
T ss_pred             cHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhh
Confidence            48888764  44678999988888888999888877775

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.37  E-value=0.012  Score=74.08  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhh---hch--HHHHHH
Q 039206           92 KEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRL---NLK--KEKQKR  166 (645)
Q Consensus        92 ~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~l---e~k--~el~~~  166 (645)
                      ..=.-+..+.+.....+.++.+.+..++.++.-++..+.....++.....++.-++.+-.+|....   ..+  .--...
T Consensus      1229 EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~ 1308 (1822)
T KOG4674|consen 1229 ESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKND 1308 (1822)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence            333345566666666677777777777777777777777777777777777777776666666211   100  001234


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          167 LESLDGEVRESEKELVLMKEQKASIRAMIEACT  199 (645)
Q Consensus       167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e  199 (645)
                      +..+..+|+++++.+..++..++++...+..++
T Consensus      1309 ~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1309 YEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666666655555554444444444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.36  E-value=0.011  Score=67.46  Aligned_cols=71  Identities=23%  Similarity=0.310  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          181 LVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTV  251 (645)
Q Consensus       181 ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel  251 (645)
                      +.....++++.+..|+...+++..+....++++.+++.-+.++..++.+.......+..+..++...+.++
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL  353 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL  353 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence            33344444455555555555555555555555555555555555555555554444444444444444444

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=0.0046  Score=69.26  Aligned_cols=138  Identities=12%  Similarity=0.222  Sum_probs=75.8

Q ss_pred             hhhHHHHH---HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           51 LGLFTAQW---IQELFDLTMKSLEKQSSSSIDVDMKIRLLDER---AKEIENKESELVLVEKKIKDCNFELACKEKELGF  124 (645)
Q Consensus        51 ~~~~~~~~---~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~---~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~  124 (645)
                      -+.+..++   ++..+.++.+.++   ++.+.-+.+..++.++   .+.++.+++....++.++.-++.-..........
T Consensus       215 ~~~~~~Elk~~l~~~~~~i~~~ie---~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~  291 (581)
T KOG0995|consen  215 SSELEDELKHRLEKYFTSIANEIE---DLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH  291 (581)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence            34555555   7777777888887   7777777666666654   4456666666666666666555555555555555


Q ss_pred             HHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206          125 VRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASI  191 (645)
Q Consensus       125 l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel  191 (645)
                      +.+.++....+++.++.+++.|..+..+...++++..--.++++.++.+...+.+.+..+..+++.+
T Consensus       292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l  358 (581)
T KOG0995|consen  292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL  358 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555554444443333222123444444444444444444444443333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=98.31  E-value=0.0048  Score=72.46  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhh-chHHHHHHHHHhHHHHHHHHH
Q 039206          101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLN-LKKEKQKRLESLDGEVRESEK  179 (645)
Q Consensus       101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le-~k~el~~~ieei~~eI~~~e~  179 (645)
                      +....+.+++++.++.....+.+.+..++..+..++...+.++..++..+...|..+. .+..+..++..++.+.....+
T Consensus       204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~  283 (650)
T TIGR03185       204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRA  283 (650)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556666666666666666666666666666666666666666552211 122455555555555555555


Q ss_pred             HHH
Q 039206          180 ELV  182 (645)
Q Consensus       180 ~ie  182 (645)
                      .+.
T Consensus       284 ~l~  286 (650)
T TIGR03185       284 QLR  286 (650)
T ss_pred             HHH
Confidence            544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.30  E-value=0.00052  Score=78.78  Aligned_cols=69  Identities=7%  Similarity=0.085  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206           81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK  152 (645)
Q Consensus        81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~  152 (645)
                      +..+.+++.+..++..+..++...+..++.++....   ..++.++.+++....+...++.+++.++.+|.+
T Consensus       177 ~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~  245 (562)
T PHA02562        177 RELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLN  245 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444433221   234444444444444444444444444444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.27  E-value=0.0029  Score=71.29  Aligned_cols=150  Identities=19%  Similarity=0.276  Sum_probs=102.3

Q ss_pred             hhHHHhHHHHhHHHHHhhhcchHhhhhhHHHHH---------HHHHHHHHHhhhhhcC-----CchHhHHHHHHHHHHHH
Q 039206           26 VLVELRVAELKKETLRRSFDLPHEQLGLFTAQW---------IQELFDLTMKSLEKQS-----SSSIDVDMKIRLLDERA   91 (645)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~e~~~~~~r~~~~~~~-----~~~~~v~~~~~~~ee~~   91 (645)
                      -.+-++-+.++-   .+.+.+|.+++.....++         ++-.++.+|.....-.     -.+.++.+..+.+++..
T Consensus        29 ~as~ir~sR~rE---K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~  105 (546)
T KOG0977|consen   29 AASPIRDSRERE---KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETA  105 (546)
T ss_pred             chhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHH
Confidence            445555554432   456777777777666555         6667777777655210     12467788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhH
Q 039206           92 KEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLD  171 (645)
Q Consensus        92 ~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~  171 (645)
                      ++...++.+|..++.+++++....+.........+.++......+..++.++.-+...+..+..++.  + |+.+...+.
T Consensus       106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~--~-Lk~en~rl~  182 (546)
T KOG0977|consen  106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK--R-LKAENSRLR  182 (546)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH--H-HHHHhhhhH
Confidence            8888888888888888888888888888888888888888888888888888887777776553222  2 444444444


Q ss_pred             HHHHHHHHHH
Q 039206          172 GEVRESEKEL  181 (645)
Q Consensus       172 ~eI~~~e~~i  181 (645)
                      ..|.++.+.+
T Consensus       183 ~~l~~~r~~l  192 (546)
T KOG0977|consen  183 EELARARKQL  192 (546)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.25  E-value=0.027  Score=71.03  Aligned_cols=146  Identities=12%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH----------HHHHHHHHHHHHHHHHHHHhHH
Q 039206          190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFM---KDLL----------VKLRLYEDNLQSLQSTVRLREN  256 (645)
Q Consensus       190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i---~ele----------~El~~lr~e~e~l~eel~~~~~  256 (645)
                      -+..+++-+.-+...+..+++.+...+++.+..|...+...   ....          ..+..+++.-.-+.++......
T Consensus      1164 i~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~ 1243 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLE 1243 (1822)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            44445555555566666666666666666666555554433   1111          1111111222222222223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhH--------HHHhHHHHHhhHHHHHHHH
Q 039206          257 ELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQV--------KEKELISVGKSIRQFEERV  328 (645)
Q Consensus       257 ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~--------ke~el~~v~~~i~~le~~~  328 (645)
                      .+.++...++.++.++.-+...+..+..++....++++-++.....|+...+.        .-.++.++..+|.+++..+
T Consensus      1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el 1323 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEEL 1323 (1822)
T ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444444444433332        1125666666777777766


Q ss_pred             HHhhhhH
Q 039206          329 REFELRE  335 (645)
Q Consensus       329 ~eLE~~n  335 (645)
                      ...+..+
T Consensus      1324 ~~ke~~~ 1330 (1822)
T KOG4674|consen 1324 EEKENLI 1330 (1822)
T ss_pred             HHHHHHH
Confidence            6555555

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=0.0079  Score=70.63  Aligned_cols=13  Identities=23%  Similarity=0.248  Sum_probs=7.6

Q ss_pred             hHHHHHHHHHHHH
Q 039206          461 VQGEALKVAVEWK  473 (645)
Q Consensus       461 vke~A~~lA~~WK  473 (645)
                      -.+.|.++|....
T Consensus       626 dl~qa~~~ak~~~  638 (1200)
T KOG0964|consen  626 DLEQALRLAKKHE  638 (1200)
T ss_pred             cHHHHHHHHHhcC
Confidence            3456666666544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.0099  Score=68.18  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=21.0

Q ss_pred             HHhHHHHHhhhcchHhhhhhHHHHH
Q 039206           34 ELKKETLRRSFDLPHEQLGLFTAQW   58 (645)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~   58 (645)
                      +=||+||.+=-.+|+-+|..|..+.
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqq  340 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQ  340 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHH
Confidence            5689999999999999888777766

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.14  E-value=0.019  Score=72.55  Aligned_cols=10  Identities=10%  Similarity=0.262  Sum_probs=5.2

Q ss_pred             CCCChhhHHH
Q 039206          455 PEINSQVQGE  464 (645)
Q Consensus       455 p~i~~~vke~  464 (645)
                      |.++...++.
T Consensus       777 p~~gr~are~  786 (1486)
T PRK04863        777 PLFGRAAREK  786 (1486)
T ss_pred             ccccHHHHHH
Confidence            5555555543

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.03  E-value=0.029  Score=65.50  Aligned_cols=148  Identities=20%  Similarity=0.258  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          184 MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKR--------ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRE  255 (645)
Q Consensus       184 ~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~--------ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~  255 (645)
                      ++..-+.++.+++.+++++.++.-..+-++++++.+-.        ++..++..-..+..-+..+++-...-+.....+.
T Consensus       323 AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~  402 (1243)
T KOG0971|consen  323 AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQ  402 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            55556677888888888888887777777777765421        3444555555555556666666666666666667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhhH
Q 039206          256 NELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELRE  335 (645)
Q Consensus       256 ~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~n  335 (645)
                      ++++.+..+++++.+..+.|..+++..++.|.++.+++... ..-++-...+-.+   --.++.+++.+++.+.+||.-+
T Consensus       403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGAE~MV~qLtdk---nlnlEekVklLeetv~dlEale  478 (1243)
T KOG0971|consen  403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGAEEMVEQLTDK---NLNLEEKVKLLEETVGDLEALE  478 (1243)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777666443 0111111111111   1125556666666655555444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.02  E-value=0.0035  Score=70.66  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFE  114 (645)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e  114 (645)
                      ..+.|+-+++.+..+..+..++  +..++++++.+..   +..+.+..-...+......+..+++++......+..++.+
T Consensus        94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~---~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e  170 (546)
T KOG0977|consen   94 LATARKLLDETARERAKLEIEITKLREELKELRKKLE---KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDE  170 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3456667777777777777777  8888888888877   6666666666666666677777777766666666666666


Q ss_pred             HHHHHHHHHHHHHHHhHhHHH
Q 039206          115 LACKEKELGFVRKRIGVCNSE  135 (645)
Q Consensus       115 ~~~~~~el~~l~~~i~e~~~e  135 (645)
                      ...+..+...+...|....+.
T Consensus       171 ~~~Lk~en~rl~~~l~~~r~~  191 (546)
T KOG0977|consen  171 LKRLKAENSRLREELARARKQ  191 (546)
T ss_pred             HHHHHHHhhhhHHHHHHHHHH
Confidence            666666666666666555543

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.97  E-value=0.015  Score=67.26  Aligned_cols=55  Identities=13%  Similarity=0.191  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          199 TEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRL  253 (645)
Q Consensus       199 e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~  253 (645)
                      .++++.++........+...+-.++..++..+.++..++....+....+..++..
T Consensus       425 ~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~  479 (594)
T PF05667_consen  425 IEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK  479 (594)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344444444444444444444555555555555555555555555444444333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.96  E-value=0.0029  Score=64.58  Aligned_cols=26  Identities=8%  Similarity=-0.006  Sum_probs=13.3

Q ss_pred             HHHHHHHHhHHHHHHhhhhhchhhhH
Q 039206          284 QELLLKENQLKSVLACIEDCSKEDQV  309 (645)
Q Consensus       284 ~ei~e~e~el~~~~~~i~~~~~e~~~  309 (645)
                      .++..+..+..++......+..++++
T Consensus       149 ~e~~~i~e~~~~~~~~~~~L~~~l~~  174 (239)
T COG1579         149 EEVAEIREEGQELSSKREELKEKLDP  174 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            34444444444555555555555565

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.90  E-value=0.16  Score=63.79  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=17.7

Q ss_pred             HHhHHHHHhhHHHHHHHHHHhhhhH
Q 039206          311 EKELISVGKSIRQFEERVREFELRE  335 (645)
Q Consensus       311 e~el~~v~~~i~~le~~~~eLE~~n  335 (645)
                      ...+..++.+|++++..+..++...
T Consensus       770 ~~~I~~l~~~i~~L~~~l~~ie~~r  794 (1201)
T PF12128_consen  770 PERIQQLKQEIEQLEKELKRIEERR  794 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3356667778888888777777655

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.90  E-value=0.0041  Score=63.56  Aligned_cols=27  Identities=22%  Similarity=0.177  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          101 LVLVEKKIKDCNFELACKEKELGFVRK  127 (645)
Q Consensus       101 ie~~e~~lee~~~e~~~~~~el~~l~~  127 (645)
                      ++.++.+++.+.+.+..++.+++.++.
T Consensus        33 l~k~~~e~e~~~~~~~~~~~e~e~le~   59 (239)
T COG1579          33 LKKAKAELEALNKALEALEIELEDLEN   59 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.86  E-value=0.11  Score=60.34  Aligned_cols=77  Identities=12%  Similarity=0.141  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039206          190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE  266 (645)
Q Consensus       190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele  266 (645)
                      +++..+.++++....+.....++...+..-+--..++..++.++..++..++..+....+++..+....+...+.++
T Consensus       164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lq  240 (617)
T PF15070_consen  164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQ  240 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555544444444555555555555555555555555554444444444443333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.86  E-value=0.016  Score=68.20  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          226 TQTFMKDLLVKLRLYEDNLQSLQSTVRLRENEL  258 (645)
Q Consensus       226 l~~~i~ele~El~~lr~e~e~l~eel~~~~~el  258 (645)
                      ++.+..+++.|+..++.++-...+++..++.++
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444

; GO: 0016021 integral to membrane

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.85  E-value=3.3e-06  Score=101.20  Aligned_cols=213  Identities=17%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS  138 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~  138 (645)
                      ++..+.+++.+..   +....+.........+..++..+...+++.+..+..+.+....+..+++.++..+++.......
T Consensus       185 lE~qL~El~~kle---e~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~  261 (859)
T PF01576_consen  185 LEAQLNELQAKLE---ESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQA  261 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhh
Confidence            4555555555555   5555555555555555555555556666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhhhhchhhhh----chHHHHHHHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q 039206          139 KEDELNLVKNSAEKWPKRLN----LKKEKQKRLESLDGEVRESEKELVL---------------MKEQKASIRAMIEACT  199 (645)
Q Consensus       139 le~eL~~le~ei~~~~~~le----~k~el~~~ieei~~eI~~~e~~ie~---------------~ekeieel~~eIE~~e  199 (645)
                      +...+..++.++.....+++    .+.++.+.+.....++.....+++.               +.+.+.++...++...
T Consensus       262 L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~  341 (859)
T PF01576_consen  262 LEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEAN  341 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655554443322    2234445555555555444444432               1112334444455444


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206          200 EKLEAIEESYDAVKAKLESEKRELE-------LTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREF  272 (645)
Q Consensus       200 ~ei~e~~e~ie~le~eIee~e~ELe-------el~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~  272 (645)
                      ..+..+...+.-+..++++...+++       .+..+...++..+.+.+...+.+..++..+..+...+..++-.+...+
T Consensus       342 ~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~l  421 (859)
T PF01576_consen  342 AKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNEL  421 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            4444444444444444444444333       334444555555555555555444444444444444444433333333


Q ss_pred             HH
Q 039206          273 CR  274 (645)
Q Consensus       273 ~~  274 (645)
                      +.
T Consensus       422 ee  423 (859)
T PF01576_consen  422 EE  423 (859)
T ss_dssp             --
T ss_pred             HH
Confidence            33

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.83  E-value=0.098  Score=59.46  Aligned_cols=202  Identities=16%  Similarity=0.107  Sum_probs=96.9

Q ss_pred             hhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 039206           43 SFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDE------------RAKEIENKESELVLVEKKI  108 (645)
Q Consensus        43 ~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee------------~~~~~e~~~~eie~~e~~l  108 (645)
                      +.+..++.++...--+  .+.+||.+..+-.  .....-+..+++..+-            ..+.......+.+++...+
T Consensus        53 kk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk--~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~l  130 (629)
T KOG0963|consen   53 KKNTPEDKLKMVNPLLKSYQSEIDNLTKRSK--FAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEEL  130 (629)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence            3455556666555555  7888888776644  1223345555555442            3344444555666666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch--hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 039206          109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP--KRLNLKKEKQKRLESLDGEVRESEKELVLMKE  186 (645)
Q Consensus       109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~--~~le~k~el~~~ieei~~eI~~~e~~ie~~ek  186 (645)
                      ++++.++..++..-..++...+...+........++..-.......  ...+....|..+-......++.+++.|..+..
T Consensus       131 ee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~  210 (629)
T KOG0963|consen  131 EEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQS  210 (629)
T ss_pred             HHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777776666666666666555555555542222222111  11111123444444444445555555544444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          187 QKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQS  249 (645)
Q Consensus       187 eieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~e  249 (645)
                      -+.....++..+....   .++.....++|.-.=.+|+.-+.++..++.+...++.++.....
T Consensus       211 a~~~t~~el~~~~s~~---dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~  270 (629)
T KOG0963|consen  211 AIEDTQNELFDLKSKY---DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS  270 (629)
T ss_pred             HHHhhhhHHHHHHHhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4333333333322220   01122222233333334444444455555555555555544433

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.83  E-value=0.053  Score=62.70  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          211 AVKAKLESEKRELELTQTFMKDLLVKLRLYE--DNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELL  287 (645)
Q Consensus       211 ~le~eIee~e~ELeel~~~i~ele~El~~lr--~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~  287 (645)
                      .+...++....++..+.+...++..++..+-  ..|...-..+-.+.+.+...+.++..+-.....+++.+..++..+.
T Consensus       451 ~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~  529 (594)
T PF05667_consen  451 ELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD  529 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333444444444444444443331  1233334444444444444444444444444444444444444333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.80  E-value=0.18  Score=61.14  Aligned_cols=99  Identities=19%  Similarity=0.135  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHH
Q 039206           85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ  164 (645)
Q Consensus        85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~  164 (645)
                      ...-+........++++..+++.+..++++++..+...+......+.......+++........++++.+.--..-++..
T Consensus       494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~  573 (1317)
T KOG0612|consen  494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELS  573 (1317)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhh
Confidence            33334444444444444445555555555555555555555444444444455555444555555555442111123455


Q ss_pred             HHHHHhHHHHHHHHHHHHH
Q 039206          165 KRLESLDGEVRESEKELVL  183 (645)
Q Consensus       165 ~~ieei~~eI~~~e~~ie~  183 (645)
                      .++..+..+-+..++++..
T Consensus       574 ~~iq~~~e~~~~~~d~l~~  592 (1317)
T KOG0612|consen  574 KQIQQELEENRDLEDKLSL  592 (1317)
T ss_pred             HHHHHHhhccccHHHHHHH
Confidence            5555555554455555544

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.80  E-value=0.26  Score=62.73  Aligned_cols=39  Identities=13%  Similarity=0.224  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039206          226 TQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKE  264 (645)
Q Consensus       226 l~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~e  264 (645)
                      ++..+.++...+.+++.++..++.++..+...+....+.
T Consensus       440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~  478 (1486)
T PRK04863        440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA  478 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.071  Score=61.53  Aligned_cols=32  Identities=22%  Similarity=0.367  Sum_probs=13.8

Q ss_pred             hhhhhchhhhHHHHhHHHHHhhHHHHHHHHHH
Q 039206          299 CIEDCSKEDQVKEKELISVGKSIRQFEERVRE  330 (645)
Q Consensus       299 ~i~~~~~e~~~ke~el~~v~~~i~~le~~~~e  330 (645)
                      .+.++.++..++-.+++....+++.+...+..
T Consensus       550 qldelskE~esk~~eidi~n~qlkelk~~~~~  581 (1118)
T KOG1029|consen  550 QLDELSKETESKLNEIDIFNNQLKELKEDVNS  581 (1118)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            34444444444444444444444444443333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.78  E-value=5.1e-06  Score=99.64  Aligned_cols=83  Identities=16%  Similarity=0.256  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          159 LKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLR  238 (645)
Q Consensus       159 ~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~  238 (645)
                      .|+.+..++.++...+......+..+++-...+..+++++...+.........+......+...+.++......+..+..
T Consensus       322 aKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d  401 (859)
T PF01576_consen  322 AKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERD  401 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777777776666666666555555555565555555555555555544444444444444444433333333


Q ss_pred             HHH
Q 039206          239 LYE  241 (645)
Q Consensus       239 ~lr  241 (645)
                      .+.
T Consensus       402 ~~q  404 (859)
T PF01576_consen  402 AAQ  404 (859)
T ss_dssp             ---
T ss_pred             HHH
Confidence            333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.71  E-value=0.32  Score=61.28  Aligned_cols=25  Identities=16%  Similarity=0.125  Sum_probs=13.8

Q ss_pred             HHHhhcchhhHHHhHHHHhHHHHHh
Q 039206           18 IAILSSGLVLVELRVAELKKETLRR   42 (645)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~   42 (645)
                      |--+++|..=++++..-+|.....-
T Consensus       183 I~kli~~vln~~~~~d~iK~mIi~i  207 (1201)
T PF12128_consen  183 IEKLINAVLNKKLDFDFIKNMIIAI  207 (1201)
T ss_pred             hHHHHHHHHhccccHHHHHHHHHHH
Confidence            3444455555666666666654443

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.70  E-value=0.051  Score=64.85  Aligned_cols=9  Identities=33%  Similarity=0.604  Sum_probs=6.6

Q ss_pred             hhhHhhhhc
Q 039206          412 ALLVLDAMS  420 (645)
Q Consensus       412 a~LVLd~~e  420 (645)
                      ++||.|++.
T Consensus       580 ~rlv~Dvi~  588 (1141)
T KOG0018|consen  580 VRLVIDVIN  588 (1141)
T ss_pred             eEEEEEecC
Confidence            677777776

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.61  E-value=0.3  Score=58.15  Aligned_cols=111  Identities=15%  Similarity=0.102  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHH
Q 039206          231 KDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVK  310 (645)
Q Consensus       231 ~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~k  310 (645)
                      .++..+..+++.+...+.+.++....++..+...++.+..++.............+..++..++.++++-..+.+.+...
T Consensus       477 ~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L  556 (1195)
T KOG4643|consen  477 DQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL  556 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555566666666555544443333333332


Q ss_pred             HHhHHHHHhhHHHHHHHHHHhhhhHHhhHHHHHHH
Q 039206          311 EKELISVGKSIRQFEERVREFELREREFDSLRKAV  345 (645)
Q Consensus       311 e~el~~v~~~i~~le~~~~eLE~~n~e~~~~~~~~  345 (645)
                      .    .-..++..++.-|.+++--+.+.+..-..+
T Consensus       557 k----~t~qn~~~LEq~~n~lE~~~~elkk~idaL  587 (1195)
T KOG4643|consen  557 K----TTSQNGALLEQNNNDLELIHNELKKYIDAL  587 (1195)
T ss_pred             H----HHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            1    224466777777777776665554444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.57  E-value=0.17  Score=55.67  Aligned_cols=7  Identities=29%  Similarity=0.639  Sum_probs=3.5

Q ss_pred             HHHHhcc
Q 039206          471 EWKKNME  477 (645)
Q Consensus       471 ~WK~~i~  477 (645)
                      .||..+-
T Consensus       320 ~wkG~vi  326 (420)
T COG4942         320 RWKGMVI  326 (420)
T ss_pred             cccceEE
Confidence            4555543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.56  E-value=0.21  Score=58.80  Aligned_cols=67  Identities=10%  Similarity=0.116  Sum_probs=35.1

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRI  129 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i  129 (645)
                      +..|+..+.++..   . +........+++++..++..+..+++.+..++..++.+++..+.++..++..+
T Consensus       187 L~~dl~~~~~~~~---~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~  253 (650)
T TIGR03185       187 LAGDLTNVLRRRK---K-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF  253 (650)
T ss_pred             HHHHHHHHHHHHH---h-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555544432   1 11234444555555555555555555555555555555555555555555544

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.55  E-value=0.082  Score=62.32  Aligned_cols=60  Identities=15%  Similarity=0.139  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206           89 ERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN  148 (645)
Q Consensus        89 e~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~  148 (645)
                      .+..++..+..+-+.++..+.++...++.-+.-|..++.++.+..+....+|+.|.+-.+
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk  516 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERK  516 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777777777777777777788888887777777777777776543

; GO: 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.54  E-value=0.34  Score=57.09  Aligned_cols=35  Identities=11%  Similarity=0.221  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206          120 KELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP  154 (645)
Q Consensus       120 ~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~  154 (645)
                      +..+.++.+++.....+.+++-+|+-|.+++++.|
T Consensus       325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG  359 (1243)
T KOG0971|consen  325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKG  359 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33344555566666666666666666666666665

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.49  E-value=0.34  Score=56.02  Aligned_cols=41  Identities=22%  Similarity=0.313  Sum_probs=17.4

Q ss_pred             hHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhh
Q 039206          292 QLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFE  332 (645)
Q Consensus       292 el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE  332 (645)
                      ++..+...+......+......+..+......+...+..++
T Consensus       352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie  392 (560)
T PF06160_consen  352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE  392 (560)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333344445544444544444444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.49  E-value=0.25  Score=54.36  Aligned_cols=45  Identities=18%  Similarity=0.189  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHH
Q 039206           99 SELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDEL  143 (645)
Q Consensus        99 ~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL  143 (645)
                      .+...+++.|.+++.++..++.++.....++.+.++.|..++..|
T Consensus        59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l  103 (420)
T COG4942          59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL  103 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence            333333333333333333333333333333333333333333333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.45  E-value=0.37  Score=55.25  Aligned_cols=155  Identities=14%  Similarity=0.099  Sum_probs=81.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchh
Q 039206           78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDC--NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPK  155 (645)
Q Consensus        78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~--~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~  155 (645)
                      ..|.+.++.+.-..++...+..+++.+..++...  ..++.+..+-+..+..+-+.+.++.-.-..-|..|.+.+....-
T Consensus       409 QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~et  488 (961)
T KOG4673|consen  409 QRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAET  488 (961)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH
Confidence            4555555555555666666666655554444332  22444455555555555555555555444445555444443331


Q ss_pred             hhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          156 RLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLV  235 (645)
Q Consensus       156 ~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~  235 (645)
                       |.  ....+.|..+.++..++..-+..++.--..+.+.|..++.++...+.........++.++.....++....++..
T Consensus       489 -l~--~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  489 -LE--EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             -HH--HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence             01  224455666666666666655543333224455666666666666666666656666665555555544444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.44  E-value=0.4  Score=55.48  Aligned_cols=141  Identities=20%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             hHHHHhHH---HHHhhhcchHhhhhhHHHHH-------HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHH
Q 039206           31 RVAELKKE---TLRRSFDLPHEQLGLFTAQW-------IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESE  100 (645)
Q Consensus        31 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~e  100 (645)
                      +...|++.   .....+.++++.+..+....       ....+..+...+.   +...++..+...|+++.+..+.-..+
T Consensus        61 ~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~---~~e~~i~~i~~~l~~L~~~e~~nr~~  137 (560)
T PF06160_consen   61 KFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLD---EIEEDIKEILDELDELLESEEKNREE  137 (560)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666663   34456666666665443333       4555555555555   55566666666666665555555555


Q ss_pred             HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH------------hHhHHHHhhHHHHHHHHHHhhhhchhhh
Q 039206          101 LVLVEKKIKDCNFEL-----------ACKEKELGFVRKRI------------GVCNSELQSKEDELNLVKNSAEKWPKRL  157 (645)
Q Consensus       101 ie~~e~~lee~~~e~-----------~~~~~el~~l~~~i------------~e~~~el~~le~eL~~le~ei~~~~~~l  157 (645)
                      +..+.....++++.+           ..++..++.+...+            .+....+..++.++..++..++..+..+
T Consensus       138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~  217 (560)
T PF06160_consen  138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY  217 (560)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            555555555555433           33344444444433            3444555666666666666666665222


Q ss_pred             h-chHHHHHHHHHhHHHH
Q 039206          158 N-LKKEKQKRLESLDGEV  174 (645)
Q Consensus       158 e-~k~el~~~ieei~~eI  174 (645)
                      . ++..+-.++++++.-+
T Consensus       218 ~~l~~~~P~ql~eL~~gy  235 (560)
T PF06160_consen  218 KELQKEFPDQLEELKEGY  235 (560)
T ss_pred             HHHHHHhHHHHHHHHHHH
Confidence            2 2233334444444443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.41  E-value=0.57  Score=56.51  Aligned_cols=69  Identities=6%  Similarity=0.107  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 039206          191 IRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELE  259 (645)
Q Consensus       191 l~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele  259 (645)
                      .+.-|..+...+.-....+...+.+....+..+....+++.+++..+.+++.+......+-..+.+...
T Consensus      1582 a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~ 1650 (1758)
T KOG0994|consen 1582 AQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAG 1650 (1758)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            333344444444444444444444444444444444444444444444444444444444333333333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.29  Score=57.08  Aligned_cols=188  Identities=15%  Similarity=0.140  Sum_probs=114.8

Q ss_pred             CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206           75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP  154 (645)
Q Consensus        75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~  154 (645)
                      +....-..-++..+++..-.-..++.|.+....++++........-+.+++..++.........+++.+..++.++..-+
T Consensus       640 eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~  719 (970)
T KOG0946|consen  640 EEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS  719 (970)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            33333334455667777777778888888888888888888888888888888888888888888888888888876211


Q ss_pred             -------hhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHH
Q 039206          155 -------KRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAV------KAKLESEKR  221 (645)
Q Consensus       155 -------~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~l------e~eIee~e~  221 (645)
                             ...+.-+-..+++.....++.++...-+.+.+++......++..+....+........      ++.+-+...
T Consensus       720 ~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~  799 (970)
T KOG0946|consen  720 SKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLK  799 (970)
T ss_pred             cchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHH
Confidence                   1111111133556666677777776666666665544555554444443222211111      111222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039206          222 ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE  262 (645)
Q Consensus       222 ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~  262 (645)
                      .+.+...+..+...++..++++.+.+-.........++...
T Consensus       800 ~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~  840 (970)
T KOG0946|consen  800 NLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMG  840 (970)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh
Confidence            35555566666666666666666666666655555554443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.37  E-value=0.66  Score=56.54  Aligned_cols=32  Identities=16%  Similarity=0.134  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           82 MKIRLLDERAKEIENKESELVLVEKKIKDCNF  113 (645)
Q Consensus        82 ~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~  113 (645)
                      .....+.+..+....++..+.+++.+++...+
T Consensus       498 e~~ek~~~~~~~~~~l~~~~~~~~eele~~q~  529 (1317)
T KOG0612|consen  498 EVEEKLSEEEAKKRKLEALVRQLEEELEDAQK  529 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.37  E-value=0.59  Score=55.85  Aligned_cols=66  Identities=14%  Similarity=0.053  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039206          195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELEC  260 (645)
Q Consensus       195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~  260 (645)
                      .++.-.+.-.++..+..+..+++.++..+..+.....+++...+.+..+++.+.++......-.+.
T Consensus       396 ~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~r  461 (1195)
T KOG4643|consen  396 YEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSR  461 (1195)
T ss_pred             HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            334444444444444555555555555566666666666666666666666666665554444433

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.36  E-value=0.44  Score=56.95  Aligned_cols=59  Identities=22%  Similarity=0.291  Sum_probs=41.9

Q ss_pred             ccCCchHHHHHHHHHHHhhcCCCCCChHHHH------------HHHHhhh---cccc----chHHHhhhCCCCCcchh
Q 039206          478 DTVKDSLVVLGFLHLLAAYKLASAFDGNELA------------SLLDIVA---NHRQ----TPKLRRSLGFADEVPVM  536 (645)
Q Consensus       478 ~~~~~sl~al~fL~~la~ygi~~~f~~del~------------~l~~~v~---~~~~----~~~L~~~lgl~~ki~~~  536 (645)
                      +||+-|+...-||..|+.|.++||=-.|||-            ..++..+   ...|    +|.|...|.-..+|..+
T Consensus       963 SGGERSVSTiLYLlALQ~l~~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKLLpgL~Ysenm~Il 1040 (1072)
T KOG0979|consen  963 SGGERSVSTILYLLALQELTPAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPKLLPGLDYSENMKIL 1040 (1072)
T ss_pred             CCcchHHHHHHHHHHHhhccCCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchhcCCCChhhcceEE
Confidence            7899999999999999999999998888873            2222222   1111    57777766666666554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.35  E-value=0.04  Score=52.29  Aligned_cols=135  Identities=13%  Similarity=0.185  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHH
Q 039206           85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ  164 (645)
Q Consensus        85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~  164 (645)
                      .+.+....+.+.++..++.++......+.+|.++...+..++.+++.....+......+.+.+...              
T Consensus         7 ~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~--------------   72 (143)
T PF12718_consen    7 LEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK--------------   72 (143)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------
Confidence            344445555555555555555555555555555555555555555555444444444444332221              


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY  240 (645)
Q Consensus       165 ~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l  240 (645)
                             +....+.++|..++.+++.....+.....+++.....-+.+...+..++.+......++.++..++..+
T Consensus        73 -------~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   73 -------SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             -------HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence                   112234444544555555555555555555555555555555555555666666666666665555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.28  E-value=0.78  Score=55.44  Aligned_cols=112  Identities=15%  Similarity=0.086  Sum_probs=69.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          206 EESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQE  285 (645)
Q Consensus       206 ~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~e  285 (645)
                      +..-+.+...+++........+..+.+.+..+...++.+.+.+++....+.-....-+++.++...++.+.-.....+.+
T Consensus      1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~ 1641 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE 1641 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            33334444445555555555666666666666666777777777766666666666667777777777777666666666


Q ss_pred             HHHHHHhHHHHHHhhhhhchhhhHHHHhHHHH
Q 039206          286 LLLKENQLKSVLACIEDCSKEDQVKEKELISV  317 (645)
Q Consensus       286 i~e~e~el~~~~~~i~~~~~e~~~ke~el~~v  317 (645)
                      -...+....+++..-.+.+..++.+...++.+
T Consensus      1642 A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~ 1673 (1758)
T KOG0994|consen 1642 AKQAEKTAGSAKEQALSAEQGLEILQKYYELV 1673 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777666665555555555444444443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.23  E-value=0.65  Score=53.45  Aligned_cols=191  Identities=14%  Similarity=0.076  Sum_probs=134.8

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVD-MKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ  137 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~-~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~  137 (645)
                      +...|.++|-...   ....+.+ ......+.+..--+....++..++....-+......++..|..+.-.+.+-...+.
T Consensus       195 Mi~aFEeLR~qAE---n~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~  271 (786)
T PF05483_consen  195 MIAAFEELRVQAE---NDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCN  271 (786)
T ss_pred             HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence            7788999998766   5555554 44555555666666667888888888888998999999999999888888888888


Q ss_pred             hHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 039206          138 SKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKA-----------SIRAMIEACTEKLEAIE  206 (645)
Q Consensus       138 ~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeie-----------el~~eIE~~e~ei~e~~  206 (645)
                      .++..-..-..-+-.+...-   .-+..+++.++..+.+++..-..++..++           +....++++......+.
T Consensus       272 qLeE~~~~q~E~Lkes~~~q---e~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s  348 (786)
T PF05483_consen  272 QLEEKTKEQHENLKESNEEQ---EHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHS  348 (786)
T ss_pred             HHHHHHHHHHHHHHHhHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            88766665555444444211   23667777787777776666655554433           44455666666666666


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          207 ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRE  255 (645)
Q Consensus       207 e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~  255 (645)
                      ....+++..|-.++.-|..-+.++...+.++..+..+++....++....
T Consensus       349 ~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmt  397 (786)
T PF05483_consen  349 FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMT  397 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHH
Confidence            6666777777777777777788888888888888888877777755443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.74  Score=53.81  Aligned_cols=52  Identities=17%  Similarity=0.107  Sum_probs=39.9

Q ss_pred             HHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           54 FTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKI  108 (645)
Q Consensus        54 ~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~l  108 (645)
                      ...+|  .+++...+|...+   ++...+.++....+.+...+......+....+.+
T Consensus       284 ~~~~~k~t~~~~~~lr~~~~---s~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~  337 (698)
T KOG0978|consen  284 YERELKDTESDNLKLRKQHS---SAADSLESKSRDLESLLDKIQDLISQEAELSKKL  337 (698)
T ss_pred             HHHHHhcccchHHHHHHHHH---HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455  7888888888888   8888888888888888888887777777777533

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=97.17  E-value=0.72  Score=52.71  Aligned_cols=145  Identities=13%  Similarity=0.083  Sum_probs=73.7

Q ss_pred             HHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCc------hHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           34 ELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSS------SIDVDMKIRLLDERAKEIENKESELVLVE  105 (645)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~------~~~v~~~~~~~ee~~~~~e~~~~eie~~e  105 (645)
                      +.+...++-=+-..+.+...|+..-  -+..|.++-.++.   ++      -.....+-..++...++.+++..++++.+
T Consensus        58 e~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~---eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~  134 (629)
T KOG0963|consen   58 EDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLI---EAPDPVPLLASAAELLNKQQKASEENEELKEELEEVN  134 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---hCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            4455566666667777777776665  7777777777765   32      11222222233334445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh----h----HHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHH
Q 039206          106 KKIKDCNFELACKEKELGFVRKRIGVCNSELQ----S----KEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRES  177 (645)
Q Consensus       106 ~~lee~~~e~~~~~~el~~l~~~i~e~~~el~----~----le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~  177 (645)
                      .++......-..++...++++..-......+.    .    ++.+..+.++.+-+...      .++++++.+...|+.+
T Consensus       135 ~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~------~~~~q~~~le~ki~~l  208 (629)
T KOG0963|consen  135 NELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQ------NLQEQLEELEKKISSL  208 (629)
T ss_pred             HHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence            55554444333333333332222211111111    1    22333333333333221      3667777888888888


Q ss_pred             HHHHHHHHHH
Q 039206          178 EKELVLMKEQ  187 (645)
Q Consensus       178 e~~ie~~eke  187 (645)
                      ...|.....+
T Consensus       209 q~a~~~t~~e  218 (629)
T KOG0963|consen  209 QSAIEDTQNE  218 (629)
T ss_pred             HHHHHhhhhH
Confidence            7777765555

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.10  E-value=0.54  Score=56.29  Aligned_cols=110  Identities=13%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYED  242 (645)
Q Consensus       163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~  242 (645)
                      -+.+..+++...+++...++.+.+++..+...++++++++.+...++..+...+.+.-.....+...+.+.+.++..+..
T Consensus       246 ~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~  325 (1072)
T KOG0979|consen  246 HDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKN  325 (1072)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666667777777777776666665555566666666666666666666555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206          243 NLQSLQSTVRLRENELECKEKELELKEREF  272 (645)
Q Consensus       243 e~e~l~eel~~~~~ele~~~~ele~le~E~  272 (645)
                      .++.++..-...+.++...++.+...+.++
T Consensus       326 ~le~lk~~~~~rq~~i~~~~k~i~~~q~el  355 (1072)
T KOG0979|consen  326 KLESLKKAAEKRQKRIEKAKKMILDAQAEL  355 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            555554444444444444444443333333

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.02  E-value=0.4  Score=47.27  Aligned_cols=39  Identities=15%  Similarity=0.318  Sum_probs=17.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLE  203 (645)
Q Consensus       165 ~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~  203 (645)
                      +.+-=+.+.+.+.+.+.+..+..+.++..++--..+.+.
T Consensus        88 rkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk  126 (205)
T KOG1003|consen   88 RKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLK  126 (205)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Confidence            333444455555555554444444444444443333333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.00  E-value=1  Score=51.74  Aligned_cols=189  Identities=14%  Similarity=0.162  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch-hhhhchHHHH
Q 039206           86 LLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP-KRLNLKKEKQ  164 (645)
Q Consensus        86 ~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~-~~le~k~el~  164 (645)
                      .-++...++..+++.+..+=++-+.++.++..++++++.--     ...++.++..-|+.+..+=+..+ .|+.    -.
T Consensus       403 l~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l-----~~DeLaEkdE~I~~lm~EGEkLSK~ql~----qs  473 (961)
T KOG4673|consen  403 LREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAAL-----LKDELAEKDEIINQLMAEGEKLSKKQLA----QS  473 (961)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHhHHHHHH----HH
Confidence            34555666666666666555555556666665555554411     11355555555555555444333 2222    11


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          165 KRLESLDGEVRESEKELVLMKEQKASIRAMIEA-------CTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKL  237 (645)
Q Consensus       165 ~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~-------~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El  237 (645)
                      .-|..++..++..+.-.+-..+.|-.++.+...       .++--..+.+.|.-+.+++......+...+..+..++...
T Consensus       474 ~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~  553 (961)
T KOG4673|consen  474 AIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQA  553 (961)
T ss_pred             HHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            223445555544443322222233333333332       2222233333444444455555555555555555555555


Q ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          238 RLYEDNLQSLQSTV-RLRENELECKEKELELKEREFCRIQERIEESS  283 (645)
Q Consensus       238 ~~lr~e~e~l~eel-~~~~~ele~~~~ele~le~E~~~l~~~le~~~  283 (645)
                      ...+.-+++....+ ...+-+.++.+.+-+.+-.++..|...+....
T Consensus       554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E  600 (961)
T KOG4673|consen  554 LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE  600 (961)
T ss_pred             HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555554444422 12222233444444444455555544444433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.96  E-value=1.3  Score=52.33  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=17.1

Q ss_pred             HHHHHHHHHhCCCCCCChhhHHH
Q 039206          578 LGLLHLLGAFRLAPAFDGNELES  600 (645)
Q Consensus       578 ~~~L~~I~~y~L~s~f~~d~L~k  600 (645)
                      -+-.|++++-+...+++...+-.
T Consensus       878 AsTaQLVaASrVKA~k~S~~ld~  900 (980)
T KOG0980|consen  878 ASTAQLVAASRVKADKDSKKLDA  900 (980)
T ss_pred             HHHHHHHHHHHhhccccchhhHH
Confidence            36678899988888887665543

>PRK09039 hypothetical protein; Validated

Probab=96.95  E-value=0.19  Score=54.60  Aligned_cols=7  Identities=14%  Similarity=0.430  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 039206          140 EDELNLV  146 (645)
Q Consensus       140 e~eL~~l  146 (645)
                      +++|..+
T Consensus        52 ~~eL~~L   58 (343)
T PRK09039         52 DSALDRL   58 (343)
T ss_pred             HHHHHHH
Confidence            3333333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.90  E-value=0.82  Score=50.50  Aligned_cols=44  Identities=9%  Similarity=0.078  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchh
Q 039206          112 NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPK  155 (645)
Q Consensus       112 ~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~  155 (645)
                      ...-.+.-+.|..+..+|+..+.+|..+...+.+|.+.+...++
T Consensus       322 k~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I  365 (622)
T COG5185         322 KQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI  365 (622)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence            33444444556666666666666666666666667666666664

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.90  E-value=1.4  Score=51.53  Aligned_cols=90  Identities=22%  Similarity=0.123  Sum_probs=43.1

Q ss_pred             hhHHHhHHHHHhhcchhhHHHhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHH
Q 039206           10 DFAYLVTDIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLL   87 (645)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~   87 (645)
                      |=|.+-.-..|-+|.++.+++      -..+|+-.+.++++.--+..++  ++.....+....+   .+...++..+.++
T Consensus        66 dkaglneSviie~sk~vstqe------triyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq---~lQ~ti~~~q~d~  136 (1265)
T KOG0976|consen   66 DKAGLNESVIIEQSKKVSTQE------TRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ---KLQDTIQGAQDDK  136 (1265)
T ss_pred             HHhhccchhhhhhcchhhHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            333333334444555554432      2356666666666666555555  5554444444444   4444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 039206           88 DERAKEIENKESELVLVEKKI  108 (645)
Q Consensus        88 ee~~~~~e~~~~eie~~e~~l  108 (645)
                      .+..-+++...++++.++.+|
T Consensus       137 ke~etelE~~~srlh~le~eL  157 (1265)
T KOG0976|consen  137 KENEIEIENLNSRLHKLEDEL  157 (1265)
T ss_pred             HHHHHHHHhhHHHHHHHHHHH
Confidence            444444444444444433333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.88  E-value=1.9  Score=55.03  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=11.4

Q ss_pred             CCChhhHHHHHHHHHHHHHhccc
Q 039206          456 EINSQVQGEALKVAVEWKKNMED  478 (645)
Q Consensus       456 ~i~~~vke~A~~lA~~WK~~i~~  478 (645)
                      .|...++.+= .-|..|=..|+.
T Consensus      1117 ~v~~~l~~ri-~~A~~~v~~mN~ 1138 (1353)
T TIGR02680      1117 EIARHLQSLI-LAAERQVAAMNT 1138 (1353)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHH
Confidence            3444444332 346777777653

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.84  E-value=1.7  Score=51.54  Aligned_cols=11  Identities=18%  Similarity=0.250  Sum_probs=4.9

Q ss_pred             HHHHHHHHhhc
Q 039206          487 LGFLHLLAAYK  497 (645)
Q Consensus       487 l~fL~~la~yg  497 (645)
                      .-.|+-+..||
T Consensus       720 ~~~lq~~~~~~  730 (980)
T KOG0980|consen  720 RQYLQTLNQLG  730 (980)
T ss_pred             HHHHHHHHHHh
Confidence            34444444444

>PRK09039 hypothetical protein; Validated

Probab=96.83  E-value=0.22  Score=54.07  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=12.7

Q ss_pred             hHHHHHhhhcchHhhhhhHHHHH
Q 039206           36 KKETLRRSFDLPHEQLGLFTAQW   58 (645)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~   58 (645)
                      -|--|..+++..+.++..+..++
T Consensus        40 ~q~fLs~~i~~~~~eL~~L~~qI   62 (343)
T PRK09039         40 AQFFLSREISGKDSALDRLNSQI   62 (343)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH
Confidence            35555666666555555555544

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.82  E-value=0.54  Score=46.96  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS  138 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~  138 (645)
                      +.+.+.++..++.   ++..+...+...--.-.+.+...+..=.++-.-|.....++..++..+-............+..
T Consensus        17 L~n~l~elq~~l~---~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~   93 (194)
T PF15619_consen   17 LQNELAELQRKLQ---ELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKD   93 (194)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555   4444444444433333333333333333333333344444444444444433333333333333


Q ss_pred             HHHHHH
Q 039206          139 KEDELN  144 (645)
Q Consensus       139 le~eL~  144 (645)
                      .+.+|.
T Consensus        94 ~~~el~   99 (194)
T PF15619_consen   94 KDEELL   99 (194)
T ss_pred             HHHHHH
Confidence            333333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.80  E-value=1  Score=48.60  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHH
Q 039206           81 DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE  140 (645)
Q Consensus        81 ~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le  140 (645)
                      +.-..+++.+...+..+..+++..+.+..+.+.+++....|+...+.+-+....++...+
T Consensus        70 r~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~  129 (499)
T COG4372          70 RSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAAR  129 (499)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455566666666666666666666666666666666666655555444444444333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.73  E-value=2.2  Score=54.56  Aligned_cols=23  Identities=9%  Similarity=0.098  Sum_probs=10.7

Q ss_pred             hHHHHHhhhcchHhhhhhHHHHH
Q 039206           36 KKETLRRSFDLPHEQLGLFTAQW   58 (645)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~   58 (645)
                      |...=+++|.+|+.++..+..++
T Consensus       736 R~~~R~~ri~el~~~IaeL~~~i  758 (1353)
T TIGR02680       736 RERARLRRIAELDARLAAVDDEL  758 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555555554444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.71  E-value=0.51  Score=44.64  Aligned_cols=77  Identities=19%  Similarity=0.262  Sum_probs=30.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS  246 (645)
Q Consensus       167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~  246 (645)
                      ..+++.+-+.+++.|.+++++       ++..+.........-++.++.+...+.++..+......+..++..++.+...
T Consensus        12 LK~~~~e~dsle~~v~~LEre-------Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~   84 (140)
T PF10473_consen   12 LKESESEKDSLEDHVESLERE-------LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKEN   84 (140)
T ss_pred             HHHHHHhHhhHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444       3333333333333333333334333444444433333333444333333333


Q ss_pred             HHHH
Q 039206          247 LQST  250 (645)
Q Consensus       247 l~ee  250 (645)
                      +.+.
T Consensus        85 L~k~   88 (140)
T PF10473_consen   85 LDKE   88 (140)
T ss_pred             HHHH
Confidence            3333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.69  E-value=2  Score=50.30  Aligned_cols=170  Identities=16%  Similarity=0.100  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHH
Q 039206          106 KKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMK  185 (645)
Q Consensus       106 ~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~e  185 (645)
                      .+++.+.++++.+.+++......-..+..-..+.+..|.+++..+.+...+......+-..+..-+..|+|....=..++
T Consensus        87 ~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK  166 (617)
T PF15070_consen   87 AEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELK  166 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHH
Confidence            33334444444444444333333233333333344444444444444442221111244455555566666666555677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 039206          186 EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKEL  265 (645)
Q Consensus       186 keieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~el  265 (645)
                      .++.+++.-.-.+.++..++...+.+-.--..++...+..++..+..+...++....+...+......+...+.......
T Consensus       167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~  246 (617)
T PF15070_consen  167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY  246 (617)
T ss_pred             HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888877777777766555555544444444444455555555555555544444444444444333333333333333


Q ss_pred             HHHHHHHHHH
Q 039206          266 ELKEREFCRI  275 (645)
Q Consensus       266 e~le~E~~~l  275 (645)
                      +.+..+.+.|
T Consensus       247 q~l~~e~e~L  256 (617)
T PF15070_consen  247 QQLASEKEEL  256 (617)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.64  E-value=0.64  Score=43.97  Aligned_cols=62  Identities=24%  Similarity=0.328  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST  250 (645)
Q Consensus       189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee  250 (645)
                      +.+...|..++.++.........+..+-+..+.++..++..+..+..++..+..+++.+..+
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE   81 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE   81 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555544444444444444444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.59  E-value=0.87  Score=44.99  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          258 LECKEKELELKEREFCRIQERIEESSQE  285 (645)
Q Consensus       258 le~~~~ele~le~E~~~l~~~le~~~~e  285 (645)
                      -+...+.+..++.+++.++..+.....+
T Consensus       160 AE~aERsVakLeke~DdlE~kl~~~k~k  187 (205)
T KOG1003|consen  160 AEFAERRVAKLEKERDDLEEKLEEAKEK  187 (205)
T ss_pred             HHHHHHHHHHHcccHHHHHHhhHHHHHH
Confidence            3333344444444444444444333333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.48  E-value=0.36  Score=51.97  Aligned_cols=47  Identities=17%  Similarity=0.106  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHH
Q 039206          101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVK  147 (645)
Q Consensus       101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le  147 (645)
                      ...+...++.+..+...+.+.++.+..-+.........+..++..+.
T Consensus       151 ~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk  197 (325)
T PF08317_consen  151 KEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK  197 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.43  E-value=1.1  Score=45.01  Aligned_cols=46  Identities=17%  Similarity=0.134  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206          222 ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELEL  267 (645)
Q Consensus       222 ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~  267 (645)
                      .|.....++..++.++..++-+.+.+...+..+..+++.+...++.
T Consensus        87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~  132 (201)
T PF13851_consen   87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES  132 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555554433

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.37  E-value=1.6  Score=45.49  Aligned_cols=7  Identities=14%  Similarity=0.406  Sum_probs=2.6

Q ss_pred             HHHHHHh
Q 039206          164 QKRLESL  170 (645)
Q Consensus       164 ~~~ieei  170 (645)
                      ..|+.-|
T Consensus       133 IsRvtAi  139 (265)
T COG3883         133 ISRVTAI  139 (265)
T ss_pred             HHHHHHH
Confidence            3333333

>PRK11281 hypothetical protein; Provisional

Probab=96.35  E-value=4.3  Score=50.56  Aligned_cols=91  Identities=13%  Similarity=0.155  Sum_probs=59.2

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKE-------------IENKESELVLVEKKIKDCNFELACKEKELGFV  125 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~-------------~e~~~~eie~~e~~lee~~~e~~~~~~el~~l  125 (645)
                      .....+.++.+++   ++..+++...+.+++..+.             ...++..+.+.+..+.+.+..+.....++...
T Consensus        78 ~~~~~~~L~k~l~---~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~  154 (1113)
T PRK11281         78 QKEETEQLKQQLA---QAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSL  154 (1113)
T ss_pred             HHHHHHHHHHHHH---HhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555556666666   6666666666666654431             12355566666666666666666666666666


Q ss_pred             HHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206          126 RKRIGVCNSELQSKEDELNLVKNSAEK  152 (645)
Q Consensus       126 ~~~i~e~~~el~~le~eL~~le~ei~~  152 (645)
                      +...++....+.+-..++.++...+..
T Consensus       155 qT~PERAQ~~lsea~~RlqeI~~~L~~  181 (1113)
T PRK11281        155 QTQPERAQAALYANSQRLQQIRNLLKG  181 (1113)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            776777777777777777777777765

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.31  E-value=0.001  Score=78.90  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 039206          190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTF  229 (645)
Q Consensus       190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~  229 (645)
                      .++..++.+......+..........+...+.+++.++..
T Consensus       485 ~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~  524 (713)
T PF05622_consen  485 ELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKS  524 (713)
T ss_dssp             ----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444434444444444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.27  E-value=1.7  Score=46.64  Aligned_cols=23  Identities=17%  Similarity=0.076  Sum_probs=11.3

Q ss_pred             HHHHHHHHhHhHHHHhhHHHHHH
Q 039206          122 LGFVRKRIGVCNSELQSKEDELN  144 (645)
Q Consensus       122 l~~l~~~i~e~~~el~~le~eL~  144 (645)
                      -.++.+.|.+-+.-+..+++++.
T Consensus        72 C~EL~~~I~egr~~~~~~E~et~   94 (312)
T smart00787       72 CKELKKYISEGRDLFKEIEEETL   94 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555555554444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.27  E-value=3.2  Score=48.03  Aligned_cols=119  Identities=15%  Similarity=0.146  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039206          184 MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEK  263 (645)
Q Consensus       184 ~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~  263 (645)
                      .++++.++...+......-.....+       +++.+.+++.-.-+-.++...+..+.-+...+..+.....-++.....
T Consensus       448 ~ekev~dLe~~l~~~~~~eq~yskQ-------VeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qe  520 (786)
T PF05483_consen  448 REKEVHDLEIQLTTIKESEQHYSKQ-------VEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQE  520 (786)
T ss_pred             hhhHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3334444444444443333333333       444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhH
Q 039206          264 ELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQV  309 (645)
Q Consensus       264 ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~  309 (645)
                      .+..-......+...++.+...-..++.++.+++..+.....++..
T Consensus       521 di~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~  566 (786)
T PF05483_consen  521 DINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC  566 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444445555555555555544444443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.18  E-value=3.1  Score=46.98  Aligned_cols=42  Identities=24%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             hHHHhHHHHHhhcchhhHH------HhHHHHhHHHHHhhhcchHhhhh
Q 039206           11 FAYLVTDIAILSSGLVLVE------LRVAELKKETLRRSFDLPHEQLG   52 (645)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~   52 (645)
                      ++.+|.=++...-|..+-+      .+|-+||...|.+-+++=-++..
T Consensus         6 v~llVilv~~~~~g~~lRkk~~~rI~~LEe~K~el~~lPv~dEi~kVK   53 (570)
T COG4477           6 VALLVILVAAYAVGYLLRKKNYQRIDKLEERKNELLNLPVNDEISKVK   53 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCchhHHHHHh
Confidence            4555655666666665543      56778888888877765444443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=3  Score=49.16  Aligned_cols=49  Identities=16%  Similarity=0.104  Sum_probs=27.9

Q ss_pred             CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELG  123 (645)
Q Consensus        75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~  123 (645)
                      +..-++........++.-+.+.++.++...-.....+.+....++.++.
T Consensus       668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  668 ELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334555555555555566666666666665555566666665555555

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.09  E-value=4.5  Score=47.94  Aligned_cols=26  Identities=15%  Similarity=0.149  Sum_probs=13.7

Q ss_pred             hhhhhhhHHHHhhCCCchhhHhhhhcCC
Q 039206          395 DVIFCNVFDTIRKAADPALLVLDAMSGF  422 (645)
Q Consensus       395 ~~lr~e~~~AL~~a~dPa~LVLd~~e~~  422 (645)
                      +.+-+.|...=...  |-+.|||...+.
T Consensus       457 AqLYHHVC~cNgeT--PnRVmLD~yr~~  482 (717)
T PF09730_consen  457 AQLYHHVCMCNGET--PNRVMLDYYRQG  482 (717)
T ss_pred             HHHHHHHHHccCCC--CccHHHHHHHhh
Confidence            33334333333444  555788887764

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=96.07  E-value=1.6  Score=42.69  Aligned_cols=94  Identities=17%  Similarity=0.198  Sum_probs=51.8

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          203 EAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEES  282 (645)
Q Consensus       203 ~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~  282 (645)
                      ..+..+...+...|+++..+|..+.......---++-.+..+..+..++..+..++......+..+..++..........
T Consensus        45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~  124 (177)
T PF13870_consen   45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL  124 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555666666666665555555666666666666655555555555555555555555555555555


Q ss_pred             HHHHHHHHHhHHHH
Q 039206          283 SQELLLKENQLKSV  296 (645)
Q Consensus       283 ~~ei~e~e~el~~~  296 (645)
                      ......+..+-+.+
T Consensus       125 ~~~~~~l~~~~~~~  138 (177)
T PF13870_consen  125 RKQNKKLRQQGGLL  138 (177)
T ss_pred             HHHHHHHHHhcCCC
Confidence            55555555544443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=4.4  Score=47.64  Aligned_cols=18  Identities=22%  Similarity=0.314  Sum_probs=6.6

Q ss_pred             HHHHHhhHHHHHHHHHHh
Q 039206          314 LISVGKSIRQFEERVREF  331 (645)
Q Consensus       314 l~~v~~~i~~le~~~~eL  331 (645)
                      +++..+.+.++...+.++
T Consensus       575 ~ek~~~~le~i~~~~~e~  592 (698)
T KOG0978|consen  575 LEKSEAKLEQIQEQYAEL  592 (698)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.95  E-value=0.0059  Score=72.57  Aligned_cols=31  Identities=3%  Similarity=-0.084  Sum_probs=17.7

Q ss_pred             CCchhhhhCChhHHHHHHHHhhhhhhhhhhhhH
Q 039206          370 SAAPENLTSSGRNLQILLNQHLRRHDVIFCNVF  402 (645)
Q Consensus       370 ~l~~lc~~md~~~L~~~i~~~~ke~~~lr~e~~  402 (645)
                      .-.-|+-++++.+-..++.  ...+..++.|.-
T Consensus       546 ~trVL~lr~NP~~~~~~~k--~~~l~~L~~En~  576 (722)
T PF05557_consen  546 KTRVLHLRDNPTSKAEQIK--KSTLEALQAENE  576 (722)
T ss_dssp             TEEEEEESS-HHHHHHHHH--HHHHHHHHHHHH
T ss_pred             CceeeeeCCCcHHHHHHHH--HHHHHHHHHHHH
Confidence            3455666777777666664  345666665433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.91  E-value=0.0021  Score=76.29  Aligned_cols=80  Identities=16%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             CchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHhHH---HHhhHHHHHHHHHH
Q 039206           75 SSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKE---KELGFVRKRIGVCNS---ELQSKEDELNLVKN  148 (645)
Q Consensus        75 ~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~---~el~~l~~~i~e~~~---el~~le~eL~~le~  148 (645)
                      ++..+++.+..++.+........+.+++.++.++.+++.+..++.   .+...++.+++..+.   .+..++..++...+
T Consensus       243 ~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKk  322 (713)
T PF05622_consen  243 DLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKK  322 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555554444444444455555555554444433333   233334444443322   33444555555555


Q ss_pred             hhhhch
Q 039206          149 SAEKWP  154 (645)
Q Consensus       149 ei~~~~  154 (645)
                      .+.+..
T Consensus       323 KLed~~  328 (713)
T PF05622_consen  323 KLEDLE  328 (713)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            555544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.87  E-value=5  Score=48.01  Aligned_cols=21  Identities=10%  Similarity=0.306  Sum_probs=12.9

Q ss_pred             hHHHHHhhHHHHHHHHHHhhh
Q 039206          313 ELISVGKSIRQFEERVREFEL  333 (645)
Q Consensus       313 el~~v~~~i~~le~~~~eLE~  333 (645)
                      .|-+.++-|..+..++..|-|
T Consensus       741 KLAECQeTI~sLGkQLksLa~  761 (769)
T PF05911_consen  741 KLAECQETIASLGKQLKSLAT  761 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC
Confidence            455555666666666666654

The function of this family is unknown.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.86  E-value=0.036  Score=65.92  Aligned_cols=130  Identities=17%  Similarity=0.247  Sum_probs=19.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEES---------YDAVKAKLESEKRELELTQTFMKDL  233 (645)
Q Consensus       163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~---------ie~le~eIee~e~ELeel~~~i~el  233 (645)
                      ++..+...+..+.++++..-..-++++-++..++.++.+.......         ++++...++.   -..+++..+..+
T Consensus       390 l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ele~~l~~l  466 (722)
T PF05557_consen  390 LEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDE---YKAELEAQLEEL  466 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHH---HHHHHHHHHHHH
Confidence            3344445555566666666667777776676666655544333211         1222111211   122222344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039206          234 LVKLRLYEDNLQSLQSTVRLRENELE-------CKEKELELKEREFCRIQERIEESSQELLLKENQLKS  295 (645)
Q Consensus       234 e~El~~lr~e~e~l~eel~~~~~ele-------~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~  295 (645)
                      ..++...+........++..+.....       ....++..+..++..+...+..+..++..++.+++.
T Consensus       467 ~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  467 EEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             ---------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444333333333222222221       123344455555555555565666666666666654

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.82  E-value=2.2  Score=42.22  Aligned_cols=109  Identities=13%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 039206          185 KEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKE  264 (645)
Q Consensus       185 ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~e  264 (645)
                      +.++++++.....+++..+.+..+...++.+...+..++..++..-..+..+...++.+...+...       ...+...
T Consensus        66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~-------~~~Lq~Q  138 (193)
T PF14662_consen   66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATE-------KATLQRQ  138 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHh-------hHHHHHH
Confidence            444555555555555555555555555555555555555555555555555554444444444433       5555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 039206          265 LELKEREFCRIQERIEESSQELLLKENQLKSVLACI  300 (645)
Q Consensus       265 le~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i  300 (645)
                      +-.++.-+..-...+......+.++...+.+|+.-.
T Consensus       139 l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~t  174 (193)
T PF14662_consen  139 LCEFESLICQRDAILSERTQQIEELKKTIEEYRSIT  174 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            554544444444455555556666666665553333

>TIGR00634 recN DNA repair protein RecN

Probab=95.80  E-value=0.89  Score=52.67  Aligned_cols=40  Identities=8%  Similarity=-0.009  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206          109 KDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN  148 (645)
Q Consensus       109 ee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~  148 (645)
                      .....+......++..+.........++..++-.++++++
T Consensus       164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~  203 (563)
T TIGR00634       164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE  203 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            3333334444444444444444444444444444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.78  E-value=3.6  Score=44.36  Aligned_cols=10  Identities=30%  Similarity=0.438  Sum_probs=4.3

Q ss_pred             HhhHHHHHHH
Q 039206          336 REFDSLRKAV  345 (645)
Q Consensus       336 ~e~~~~~~~~  345 (645)
                      .+...++.++
T Consensus       276 ~Ev~~Lk~~~  285 (325)
T PF08317_consen  276 SEVKRLKAKV  285 (325)
T ss_pred             HHHHHHHHHH
Confidence            3334444444

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.76  E-value=8.1  Score=48.25  Aligned_cols=21  Identities=14%  Similarity=0.270  Sum_probs=10.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHH
Q 039206          163 KQKRLESLDGEVRESEKELVL  183 (645)
Q Consensus       163 l~~~ieei~~eI~~~e~~ie~  183 (645)
                      +..++.++..++.....++..
T Consensus       883 le~~~~~l~e~~~~~~s~~~e  903 (1294)
T KOG0962|consen  883 LEEDIEELSEEITRLDSKVKE  903 (1294)
T ss_pred             hHHHHHHHHHHHHHHHHHHHh
Confidence            444555555555555544443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=4.9  Score=45.49  Aligned_cols=66  Identities=23%  Similarity=0.202  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          220 KRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV  296 (645)
Q Consensus       220 e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~  296 (645)
                      +.++.+..-+...+-.++.++.++--.+++.+..+           -.-+.+++++.-.+.++..+++-+..++++.
T Consensus       155 r~elKe~KfRE~RllseYSELEEENIsLQKqVs~L-----------R~sQVEyEglkheikRleEe~elln~q~ee~  220 (772)
T KOG0999|consen  155 RDELKEYKFREARLLSEYSELEEENISLQKQVSNL-----------RQSQVEYEGLKHEIKRLEEETELLNSQLEEA  220 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH-----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444442222           1224456666777777777777777777664

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.72  E-value=8.4  Score=48.13  Aligned_cols=55  Identities=20%  Similarity=0.256  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206          174 VRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQT  228 (645)
Q Consensus       174 I~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~  228 (645)
                      +...-.++..++.++.++++.+.....++.+...++..+...+....++.+.+..
T Consensus       873 ~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~  927 (1294)
T KOG0962|consen  873 IERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKN  927 (1294)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHH
Confidence            3333334444555555555555555555555555555554444444444444333

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.54  E-value=4.8  Score=44.16  Aligned_cols=18  Identities=11%  Similarity=0.361  Sum_probs=7.7

Q ss_pred             hHHHHHhhHHHHHHHHHH
Q 039206          313 ELISVGKSIRQFEERVRE  330 (645)
Q Consensus       313 el~~v~~~i~~le~~~~e  330 (645)
                      ++..++.++..+...+..
T Consensus       254 ~l~~~~~~l~~~~~~l~~  271 (423)
T TIGR01843       254 RLAELRERLNKARDRLQR  271 (423)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            333444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.51  E-value=3.1  Score=41.79  Aligned_cols=52  Identities=12%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206          101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK  152 (645)
Q Consensus       101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~  152 (645)
                      |..+..+++++.......+..|..+..+......-+...+.+..++...+..
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~   80 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN   80 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444455555555555555555555555555555444443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.32  E-value=2.4  Score=39.54  Aligned_cols=19  Identities=16%  Similarity=0.517  Sum_probs=9.4

Q ss_pred             HHhhHHHHHHHHHHhhhhH
Q 039206          317 VGKSIRQFEERVREFELRE  335 (645)
Q Consensus       317 v~~~i~~le~~~~eLE~~n  335 (645)
                      ++..+..++.++.+|..-|
T Consensus       103 le~e~~~~~~r~~dL~~QN  121 (132)
T PF07926_consen  103 LEKELSELEQRIEDLNEQN  121 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.22  E-value=9.6  Score=45.69  Aligned_cols=8  Identities=0%  Similarity=0.285  Sum_probs=3.4

Q ss_pred             HHHhhhhh
Q 039206          343 KAVEDSSK  350 (645)
Q Consensus       343 ~~~~~~~~  350 (645)
                      .++..|.+
T Consensus       740 ~KLAECQe  747 (769)
T PF05911_consen  740 EKLAECQE  747 (769)
T ss_pred             HHHHHHHH
Confidence            34444443

The function of this family is unknown.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.11  E-value=6.4  Score=43.19  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=10.5

Q ss_pred             HHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206          127 KRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus       127 ~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      .++......+..+...+..+...+.
T Consensus        81 ~~l~~l~~~~~~l~a~~~~l~~~~~  105 (423)
T TIGR01843        81 ADAAELESQVLRLEAEVARLRAEAD  105 (423)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444444444444444444333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.11  E-value=2.9  Score=50.11  Aligned_cols=62  Identities=13%  Similarity=0.142  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206           91 AKEIENKESELVLVEKKIKDCNFELAC--------KEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK  152 (645)
Q Consensus        91 ~~~~e~~~~eie~~e~~lee~~~e~~~--------~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~  152 (645)
                      ..++..++.++...+..+..+..+-..        ...+|..+...+...+.++...+..+..++..+..
T Consensus       200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~  269 (754)
T TIGR01005       200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQN  269 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334444444444444444444432111        12556666666666666666666666666666553

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=95.03  E-value=0.73  Score=52.55  Aligned_cols=13  Identities=8%  Similarity=0.133  Sum_probs=6.5

Q ss_pred             HHHHHHHHHhhhh
Q 039206           59 IQELFDLTMKSLE   71 (645)
Q Consensus        59 ~e~~~~~~r~~~~   71 (645)
                      +...|..+..+++
T Consensus       357 yk~kl~~vEr~~~  369 (652)
T COG2433         357 YKPKLEKVERKLP  369 (652)
T ss_pred             HHHHHHHHHHhcc
Confidence            4455555555444

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.98  E-value=6.3  Score=42.29  Aligned_cols=42  Identities=12%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 039206           96 NKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ  137 (645)
Q Consensus        96 ~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~  137 (645)
                      ++..-|.-+.++|+.++.++..+.--.+.++.+-....+...
T Consensus         6 SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~   47 (319)
T PF09789_consen    6 SKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYR   47 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556666666666666666666665555544444433

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=94.95  E-value=14  Score=46.17  Aligned_cols=13  Identities=8%  Similarity=0.192  Sum_probs=8.3

Q ss_pred             CChhHHHHHHHHh
Q 039206          378 SSGRNLQILLNQH  390 (645)
Q Consensus       378 md~~~L~~~i~~~  390 (645)
                      -+|..|..|+...
T Consensus       889 ~~g~kf~~~~~~~  901 (1047)
T PRK10246        889 KEGDKFRKFAQGL  901 (1047)
T ss_pred             ccCchHHHHHHHH
Confidence            4566777777543

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.91  E-value=2  Score=42.28  Aligned_cols=19  Identities=21%  Similarity=0.296  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 039206          223 LELTQTFMKDLLVKLRLYE  241 (645)
Q Consensus       223 Leel~~~i~ele~El~~lr  241 (645)
                      +..+...+..+.+++..++
T Consensus       132 l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  132 LDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK10869 recombination and repair protein; Provisional

Probab=94.87  E-value=4.1  Score=47.17  Aligned_cols=31  Identities=16%  Similarity=-0.007  Sum_probs=15.4

Q ss_pred             ccCCchHHHHHHHHHHHhhcCCCCCChHHHH
Q 039206          478 DTVKDSLVVLGFLHLLAAYKLASAFDGNELA  508 (645)
Q Consensus       478 ~~~~~sl~al~fL~~la~ygi~~~f~~del~  508 (645)
                      ++|+.+.-++|+...++.+..++.+=.||+.
T Consensus       432 SgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd  462 (553)
T PRK10869        432 SGGELSRIALAIQVITARKMETPALIFDEVD  462 (553)
T ss_pred             CHHHHHHHHHHHHHHhccCCCCCEEEEECCC
Confidence            4555555555555555444444444444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.80  E-value=6.7  Score=41.76  Aligned_cols=106  Identities=13%  Similarity=0.201  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206          188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELEL  267 (645)
Q Consensus       188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~  267 (645)
                      ++.++.++..++.+...++.+...+..+-...+..   -+.-+.++-++|.....++..+.+++.....+......++..
T Consensus       162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~  238 (306)
T PF04849_consen  162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS  238 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777766665544333322   111233444445555555555555544444446666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          268 KEREFCRIQERIEESSQELLLKENQLKSV  296 (645)
Q Consensus       268 le~E~~~l~~~le~~~~ei~e~e~el~~~  296 (645)
                      +..++-.++.+......+-+++...+...
T Consensus       239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~s  267 (306)
T PF04849_consen  239 LLSQIVDLQQRCKQLAAENEELQQHLQAS  267 (306)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            66666666666666666666666665544

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.72  E-value=6.3  Score=44.73  Aligned_cols=10  Identities=10%  Similarity=0.268  Sum_probs=5.3

Q ss_pred             HhhHHHHHHH
Q 039206          336 REFDSLRKAV  345 (645)
Q Consensus       336 ~e~~~~~~~~  345 (645)
                      ..|+.+..++
T Consensus       369 ~~Y~~l~~r~  378 (498)
T TIGR03007       369 SNYEQLLTRR  378 (498)
T ss_pred             HHHHHHHHHH
Confidence            4555555555

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=10  Score=42.99  Aligned_cols=27  Identities=4%  Similarity=-0.199  Sum_probs=16.2

Q ss_pred             hhhhhhhhHHHHhhCCCchhhHhhhhc
Q 039206          394 HDVIFCNVFDTIRKAADPALLVLDAMS  420 (645)
Q Consensus       394 ~~~lr~e~~~AL~~a~dPa~LVLd~~e  420 (645)
                      .+-+-+-..+++..+|+|+.-|...+.
T Consensus       611 ~~ql~~~~~~~~~~~~ln~~d~~~~~~  637 (654)
T KOG4809|consen  611 TFQLVSIGLAAVAMDVLNTGDVVWLLN  637 (654)
T ss_pred             HHHHHHHHHHhcccCCCCCCccccccc
Confidence            333445666777777777766555444

>PRK11281 hypothetical protein; Provisional

Probab=94.60  E-value=17  Score=45.50  Aligned_cols=24  Identities=13%  Similarity=0.072  Sum_probs=11.3

Q ss_pred             CchHhHHHHHHHHHHHHHHHHHHH
Q 039206           75 SSSIDVDMKIRLLDERAKEIENKE   98 (645)
Q Consensus        75 ~~~~~v~~~~~~~ee~~~~~e~~~   98 (645)
                      +..+.+...-.++.+..++++.+.
T Consensus        84 ~L~k~l~~Ap~~l~~a~~~Le~Lk  107 (1113)
T PRK11281         84 QLKQQLAQAPAKLRQAQAELEALK  107 (1113)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhh
Confidence            444444444444444444444433

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=94.54  E-value=7.8  Score=45.73  Aligned_cols=43  Identities=19%  Similarity=0.275  Sum_probs=24.6

Q ss_pred             HHhHHHHhHHHHHh--------------hhcchHhhhh-hHHHHH----HHHHHHHHHhhhh
Q 039206           29 ELRVAELKKETLRR--------------SFDLPHEQLG-LFTAQW----IQELFDLTMKSLE   71 (645)
Q Consensus        29 ~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~~~----~e~~~~~~r~~~~   71 (645)
                      +-+|.+||+|....              .|..|..+.+ .++...    ++..++-+|...+
T Consensus       435 e~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~s  496 (762)
T PLN03229        435 EGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFS  496 (762)
T ss_pred             HHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            34677888877655              3444444444 233322    6777777776666

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.53  E-value=8.7  Score=41.81  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=35.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhh
Q 039206           78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSA  150 (645)
Q Consensus        78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei  150 (645)
                      .+++.+..++.-..++....+.|-+....++.....+.+.++.+++..+..+-....++..+.+.-.++..++
T Consensus        81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl  153 (499)
T COG4372          81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRL  153 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444455555555555555555555554444444444444444444333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.52  E-value=0.81  Score=45.95  Aligned_cols=73  Identities=25%  Similarity=0.246  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039206          190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE  262 (645)
Q Consensus       190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~  262 (645)
                      ++++..+++..++.+...+..++..+++.++.++++.+.+++.+..+.+.+...+..+-.++..+++.++++.
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            5555666666666666666666666666666666666666666666666666666555555444444444333

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.51  E-value=4.5  Score=42.00  Aligned_cols=108  Identities=16%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206          189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK  268 (645)
Q Consensus       189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~l  268 (645)
                      .++...++.+..+.....-.++++++.++..+...++-......+..+...+-+..+.+...-..+..++-.+...++-+
T Consensus        21 qelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l  100 (307)
T PF10481_consen   21 QELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL  100 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence            33344444444444444445555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          269 EREFCRIQERIEESSQELLLKENQLKSV  296 (645)
Q Consensus       269 e~E~~~l~~~le~~~~ei~e~e~el~~~  296 (645)
                      +.++......++.+..++...+.+++..
T Consensus       101 EgQl~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen  101 EGQLNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555554443

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF13514 AAA_27: AAA domain

Probab=94.47  E-value=19  Score=45.41  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=10.9

Q ss_pred             HHHHHHHHhhcCCCCCChHHHHHHH
Q 039206          487 LGFLHLLAAYKLASAFDGNELASLL  511 (645)
Q Consensus       487 l~fL~~la~ygi~~~f~~del~~l~  511 (645)
                      +||+..++..|.+--|=.|+++..|
T Consensus      1040 LA~~e~~~~~~~~lP~IlDD~fvnf 1064 (1111)
T PF13514_consen 1040 LALAELLAEQGEPLPFILDDIFVNF 1064 (1111)
T ss_pred             HHHHHHHHhCCCCCcEEeeCCcccc
Confidence            3555555444443333334444333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.42  E-value=11  Score=42.68  Aligned_cols=33  Identities=12%  Similarity=0.137  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206          119 EKELGFVRKRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus       119 ~~el~~l~~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      ..++..+...+...+.++...+..+..+...+.
T Consensus       203 ~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~  235 (498)
T TIGR03007       203 YSEISEAQEELEAARLELNEAIAQRDALKRQLG  235 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344555555555555555555555555555444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.25  E-value=11  Score=41.97  Aligned_cols=89  Identities=24%  Similarity=0.264  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHH
Q 039206           88 DERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV---RKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ  164 (645)
Q Consensus        88 ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l---~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~  164 (645)
                      ++.-+.++.+..+|+.++.+|..+...+.++...+..-   -...+..+.+...+-++|+.+..++....      +.+.
T Consensus       326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~------k~V~  399 (622)
T COG5185         326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLT------KSVK  399 (622)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHH------HHHH
Confidence            34445555555555555555555555555555554441   12233444444444455544444433322      2233


Q ss_pred             HHHHHhHHHHHHHHHHHH
Q 039206          165 KRLESLDGEVRESEKELV  182 (645)
Q Consensus       165 ~~ieei~~eI~~~e~~ie  182 (645)
                      .+--++++-++.+++.+.
T Consensus       400 ~~~leaq~~~~slek~~~  417 (622)
T COG5185         400 SRKLEAQGIFKSLEKTLR  417 (622)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            333344444444444443

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.18  E-value=8.6  Score=46.17  Aligned_cols=16  Identities=38%  Similarity=0.461  Sum_probs=9.9

Q ss_pred             HHHhHHHHHhhcchhh
Q 039206           12 AYLVTDIAILSSGLVL   27 (645)
Q Consensus        12 ~~~~~~~~~~~~~~~~   27 (645)
                      .++-|-+.|+.|-.++
T Consensus        72 ~~v~tqieiL~Sr~v~   87 (754)
T TIGR01005        72 TGVATQVEILSSNEIL   87 (754)
T ss_pred             HHHHHHHHHHccHHHH
Confidence            3566777777775443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.13  E-value=0.77  Score=45.73  Aligned_cols=105  Identities=12%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206          189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELK  268 (645)
Q Consensus       189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~l  268 (645)
                      ..++.++.++.....+...++..+..++..++..+......+..+..++..++.++..+..++....+.++.+..++..+
T Consensus        77 ~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L  156 (194)
T PF08614_consen   77 AKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL  156 (194)
T ss_dssp             -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555566666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          269 EREFCRIQERIEESSQELLLKENQL  293 (645)
Q Consensus       269 e~E~~~l~~~le~~~~ei~e~e~el  293 (645)
                      +.+++.+++++..+..+=..+-...
T Consensus       157 ~l~~~~~e~k~~~l~~En~~Lv~Rw  181 (194)
T PF08614_consen  157 QLQLNMLEEKLRKLEEENRELVERW  181 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665555544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.95  E-value=13  Score=41.42  Aligned_cols=145  Identities=16%  Similarity=0.192  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 039206          190 SIRAMIEACTEKLEAIEESYDAVKAKLESEKR--ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELEL  267 (645)
Q Consensus       190 el~~eIE~~e~ei~e~~e~ie~le~eIee~e~--ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~  267 (645)
                      +++..+....++++....-...+..+++..-.  .......++.++..-+...+.++.....+-..++++.......++.
T Consensus       349 eleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~R  428 (521)
T KOG1937|consen  349 ELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNR  428 (521)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444333333333333332211  1233444555555555555555555555544444444444333221


Q ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHH
Q 039206          268 -----------------KEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVRE  330 (645)
Q Consensus       268 -----------------le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~e  330 (645)
                                       .-+..-.+..++....++|-+.-..=+.++..+-++...++..+  ....-++.+++...+.+
T Consensus       429 sfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~--~k~~l~slEkl~~Dyqa  506 (521)
T KOG1937|consen  429 SFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEE--QKQYLKSLEKLHQDYQA  506 (521)
T ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHH--HHHHHhhHHHHHHHHHH
Confidence                             11122233344444444554444444444444444444434321  22334444555555555


Q ss_pred             hhhhHH
Q 039206          331 FELRER  336 (645)
Q Consensus       331 LE~~n~  336 (645)
                      +...|.
T Consensus       507 irqen~  512 (521)
T KOG1937|consen  507 IRQEND  512 (521)
T ss_pred             HHHHHH
Confidence            554443

>PF13166 AAA_13: AAA domain

Probab=93.93  E-value=13  Score=44.27  Aligned_cols=56  Identities=13%  Similarity=0.227  Sum_probs=26.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 039206          206 EESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECK  261 (645)
Q Consensus       206 ~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~  261 (645)
                      ..++..+...+......+......+..+..++..++.++.....-...+-..+...
T Consensus       416 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  416 QKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            33333444444444444444555555555555555555444444444444444444

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=93.72  E-value=5.5  Score=44.89  Aligned_cols=33  Identities=15%  Similarity=0.062  Sum_probs=21.0

Q ss_pred             HHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHH
Q 039206           34 ELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLT   66 (645)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~   66 (645)
                      .|....+...++.++.++..+..++  ++...+++
T Consensus        89 ~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~  123 (457)
T TIGR01000        89 VYDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSI  123 (457)
T ss_pred             EECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566667777777777666666  55555544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=93.70  E-value=11  Score=39.87  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039206          188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFM----KDLLVKLRLYEDNLQSLQSTVRLRENELECKEK  263 (645)
Q Consensus       188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i----~ele~El~~lr~e~e~l~eel~~~~~ele~~~~  263 (645)
                      -+.+..+|+.+-.+++..-..++.....-.+.+-.+..-+..+    ..+..+++.+++.-+-+.+.       +...+.
T Consensus        86 kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQq-------Lskaes  158 (305)
T PF14915_consen   86 KERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQ-------LSKAES  158 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHH-------HHHHHH
Confidence            3455555555555555555554444333223332232222222    22333344444444444444       556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhhH----HhhH
Q 039206          264 ELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELRE----REFD  339 (645)
Q Consensus       264 ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~n----~e~~  339 (645)
                      .+++++.++-...+.++..+--++.....+....-.+++...-....+..+.+.-.+-..+++++.-+.+.|    .++|
T Consensus       159 K~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLd  238 (305)
T PF14915_consen  159 KFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLD  238 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666665555555555555555566666667788888888888888    6666


Q ss_pred             HHHHHH
Q 039206          340 SLRKAV  345 (645)
Q Consensus       340 ~~~~~~  345 (645)
                      ....+.
T Consensus       239 dA~~K~  244 (305)
T PF14915_consen  239 DAHNKA  244 (305)
T ss_pred             HHHHHH
Confidence            665555

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.55  E-value=6.4  Score=36.73  Aligned_cols=69  Identities=19%  Similarity=0.211  Sum_probs=28.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLV  235 (645)
Q Consensus       167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~  235 (645)
                      +..+...+......+..+...+.........+++....--..++..-..|...+.++..++..+.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~   80 (132)
T PF07926_consen   12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA   80 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333344444444444444444444444444444444444444433333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=93.46  E-value=13  Score=39.94  Aligned_cols=44  Identities=18%  Similarity=0.184  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           80 VDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELG  123 (645)
Q Consensus        80 v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~  123 (645)
                      |..+....-++..+.......+...++....+..+.+.+..++.
T Consensus        24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~   67 (309)
T PF09728_consen   24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS   67 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333334444444444444444444444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=93.43  E-value=1.3  Score=50.67  Aligned_cols=53  Identities=21%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206           99 SELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus        99 ~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      .++....+++..++..++.++.+...++..+++..+++..++.+++.+..+..
T Consensus       415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~  467 (652)
T COG2433         415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR  467 (652)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666666666666666666666666666666666666666655554

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=93.38  E-value=9.2  Score=41.56  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=17.8

Q ss_pred             HHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHH
Q 039206          289 KENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE  326 (645)
Q Consensus       289 ~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~  326 (645)
                      ....+.....=+.++..+-......+..+......+-+
T Consensus       275 ~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~G  312 (344)
T PF12777_consen  275 TERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVG  312 (344)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHH
T ss_pred             HHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHH
Confidence            33333333333444444444444455556555555544

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.16  E-value=23  Score=42.10  Aligned_cols=66  Identities=11%  Similarity=0.007  Sum_probs=37.2

Q ss_pred             HhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHH
Q 039206           30 LRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKE   98 (645)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~   98 (645)
                      |+=+.-|-..+..+|.+++.+...++..+  ...+.+.+....+   +..+.....+.+.-.+..++...+
T Consensus        22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~---~~~~~~~~~e~~~~~lr~e~ke~K   89 (717)
T PF09730_consen   22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQ---ELRKECEDLELERKRLREEIKEYK   89 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666677777777777777666666  5555555555555   444444444444444444433333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=93.04  E-value=11  Score=37.89  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          100 ELVLVEKKIKDCNFELACKEKELGFVRK  127 (645)
Q Consensus       100 eie~~e~~lee~~~e~~~~~~el~~l~~  127 (645)
                      +|.-+...|.+...++..+..+|-.++.
T Consensus        11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~   38 (202)
T PF06818_consen   11 EISLLKQQLKESQAEVNQKDSEIVSLRA   38 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3333333333333333333333333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=93.03  E-value=18  Score=40.37  Aligned_cols=24  Identities=4%  Similarity=0.120  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          235 VKLRLYEDNLQSLQSTVRLRENEL  258 (645)
Q Consensus       235 ~El~~lr~e~e~l~eel~~~~~el  258 (645)
                      .++..++.+.+-.+.-|+.+-..+
T Consensus       342 ~~~~~L~r~~~~~~~~y~~ll~r~  365 (444)
T TIGR03017       342 DEMSVLQRDVENAQRAYDAAMQRY  365 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555544443333

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.03  E-value=7.1  Score=46.59  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          273 CRIQERIEESSQELLLKENQLKSV  296 (645)
Q Consensus       273 ~~l~~~le~~~~ei~e~e~el~~~  296 (645)
                      ..+.+-+.....+|.++..+++.+
T Consensus       688 ~~I~~iL~~~~~~I~~~v~~ik~i  711 (717)
T PF10168_consen  688 RTIKEILKQQGEEIDELVKQIKNI  711 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445555555544444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.99  E-value=3.2  Score=43.03  Aligned_cols=116  Identities=15%  Similarity=0.188  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206          193 AMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREF  272 (645)
Q Consensus       193 ~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~  272 (645)
                      ..|.+++..+..+..+.....-.|++.+..|..-..+..+-..+++-++.+...+.+..+.+.+....+.-++...+..+
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv   97 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV   97 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence            35566666666666666666666677777776666667777777777777777777776666666666666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhh
Q 039206          273 CRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQ  308 (645)
Q Consensus       273 ~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~  308 (645)
                      .-++..+......++.++.+++-++.+++.......
T Consensus        98 ~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~  133 (307)
T PF10481_consen   98 NFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS  133 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            777776666666666666666666555554444433

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.87  E-value=2.5  Score=45.40  Aligned_cols=10  Identities=20%  Similarity=0.487  Sum_probs=4.1

Q ss_pred             HHHHHHHHhh
Q 039206          441 RTCILLLEQL  450 (645)
Q Consensus       441 ~~cillLE~L  450 (645)
                      .+++.+|.|+
T Consensus       240 ~am~~~L~~~  249 (314)
T PF04111_consen  240 KAMVAFLDCL  249 (314)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3444444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.78  E-value=5.6  Score=40.82  Aligned_cols=75  Identities=13%  Similarity=0.172  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          222 ELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV  296 (645)
Q Consensus       222 ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~  296 (645)
                      .++.....+.++.++...|..++....++++.+..++..++..+.....+.+.....+.++-.++.-+..++.+.
T Consensus        26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~  100 (230)
T PF10146_consen   26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL  100 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445566667777777777777777777777777777777777666666666666666665655555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.78  E-value=2.5  Score=45.39  Aligned_cols=23  Identities=9%  Similarity=0.042  Sum_probs=11.3

Q ss_pred             hHHHHHhhHHHHHHHHHHhhhhH
Q 039206          313 ELISVGKSIRQFEERVREFELRE  335 (645)
Q Consensus       313 el~~v~~~i~~le~~~~eLE~~n  335 (645)
                      +.+.+..++......+..|...|
T Consensus       114 e~~sl~~q~~~~~~~L~~L~ktN  136 (314)
T PF04111_consen  114 ERDSLKNQYEYASNQLDRLRKTN  136 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            44445555555555566655544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.77  E-value=4.7  Score=37.18  Aligned_cols=14  Identities=21%  Similarity=0.366  Sum_probs=5.5

Q ss_pred             HhHHHHHHHHHHHH
Q 039206          169 SLDGEVRESEKELV  182 (645)
Q Consensus       169 ei~~eI~~~e~~ie  182 (645)
                      .++.++..++.+..
T Consensus        72 ~L~~el~~l~~ry~   85 (120)
T PF12325_consen   72 ELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.54  E-value=6.6  Score=46.89  Aligned_cols=65  Identities=8%  Similarity=0.025  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206           87 LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus        87 ~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      -+++..+...+....+.--.+|.++..++..++...+.+.+++++....=+.+.++++.+-....
T Consensus       560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~  624 (717)
T PF10168_consen  560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN  624 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555556666666666666666677777777666666666776666666666666666555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=92.52  E-value=4.1  Score=44.57  Aligned_cols=58  Identities=17%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206           97 KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP  154 (645)
Q Consensus        97 ~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~  154 (645)
                      +-..++.+-.+......++...+++.....+.+.++..++..+..+|+.+..++++.|
T Consensus       264 iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg  321 (359)
T PF10498_consen  264 INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERG  321 (359)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344555555555555666666666666666666667777777777777777776666

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK12704 phosphodiesterase; Provisional

Probab=92.49  E-value=24  Score=40.59  Aligned_cols=18  Identities=11%  Similarity=-0.075  Sum_probs=9.0

Q ss_pred             chHHHhhhCCCCCcchhh
Q 039206          520 TPKLRRSLGFADEVPVMH  537 (645)
Q Consensus       520 ~~~L~~~lgl~~ki~~~v  537 (645)
                      +..+++..|+.+.+.++|
T Consensus       386 Ga~il~~~~~~~~v~~aI  403 (520)
T PRK12704        386 GAELAKKYKESPVVINAI  403 (520)
T ss_pred             HHHHHHHcCCCHHHHHHH
Confidence            455666655544333333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.34  E-value=24  Score=40.19  Aligned_cols=110  Identities=22%  Similarity=0.216  Sum_probs=63.5

Q ss_pred             hHHHhHHHHHhhc---------------chhhHHHhHHHHhHHHHHhhhcchHhhhhhHHHHH--HHHHH---HHHHhhh
Q 039206           11 FAYLVTDIAILSS---------------GLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELF---DLTMKSL   70 (645)
Q Consensus        11 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~---~~~r~~~   70 (645)
                      .-.|-+||++||-               |+.+-+=      |..+..++++++....+++-++  ....|   .+...+ 
T Consensus        10 ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLee------K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk-   82 (772)
T KOG0999|consen   10 VEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEE------KEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKK-   82 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4466788888874               3333221      3345556667777766666666  22222   222222 


Q ss_pred             hhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206           71 EKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGV  131 (645)
Q Consensus        71 ~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e  131 (645)
                          .....+.+-+..|++-....+..-..|-+++++|..++.++..++++.+.+.+.-..
T Consensus        83 ----~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd  139 (772)
T KOG0999|consen   83 ----VARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSD  139 (772)
T ss_pred             ----hhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                123445556677777666666666666777777777777777777666666555433

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=92.34  E-value=15  Score=37.89  Aligned_cols=106  Identities=16%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHH
Q 039206          161 KEKQKRLESLDGEVRESEKELVLMKEQKA------------SIRAMIEACTEKLEAI-----EESYDAVKAKLESEKREL  223 (645)
Q Consensus       161 ~el~~~ieei~~eI~~~e~~ie~~ekeie------------el~~eIE~~e~ei~e~-----~e~ie~le~eIee~e~EL  223 (645)
                      |-|+-....++++++...++|+.+..+|.            .+...--.+..+..++     ..+|..++.++.-.++.-
T Consensus       173 PAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~s  252 (330)
T KOG2991|consen  173 PAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQS  252 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhH
Confidence            55666666666666666666665555443            1111112222222222     234555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039206          224 ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE  266 (645)
Q Consensus       224 eel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele  266 (645)
                      +++.....++..-+.++.+.++.....+--++.++...+++++
T Consensus       253 eElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq  295 (330)
T KOG2991|consen  253 EELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ  295 (330)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666664444444444444333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=92.21  E-value=29  Score=40.78  Aligned_cols=116  Identities=19%  Similarity=0.300  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 039206          231 KDLLVKLRLYEDNLQSLQSTVRLRENEL--------ECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIED  302 (645)
Q Consensus       231 ~ele~El~~lr~e~e~l~eel~~~~~el--------e~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~  302 (645)
                      .++..++..++++++.+-.++...-.-+        +.-..++..+......+...+......+.....++...+..+.+
T Consensus       474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe  553 (739)
T PF07111_consen  474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE  553 (739)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4677888888888888877765333222        33344455666666666666666667777777777777666666


Q ss_pred             hchhhhHHHHhHHHHHhhHH-HHHHHHHHhhhhH-HhhHHHHHHHh
Q 039206          303 CSKEDQVKEKELISVGKSIR-QFEERVREFELRE-REFDSLRKAVE  346 (645)
Q Consensus       303 ~~~e~~~ke~el~~v~~~i~-~le~~~~eLE~~n-~e~~~~~~~~~  346 (645)
                      +..+.-....++..-..... .+...+.++|+.- +.+-.++.+++
T Consensus       554 s~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLN  599 (739)
T PF07111_consen  554 STEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLN  599 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65554444444444333222 5666777777776 66666777664

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF13166 AAA_13: AAA domain

Probab=92.00  E-value=32  Score=40.86  Aligned_cols=7  Identities=29%  Similarity=0.695  Sum_probs=3.1

Q ss_pred             HHHHHHH
Q 039206           59 IQELFDL   65 (645)
Q Consensus        59 ~e~~~~~   65 (645)
                      ++.+|+.
T Consensus       274 l~~~f~~  280 (712)
T PF13166_consen  274 LEKYFDE  280 (712)
T ss_pred             HHHHHHH
Confidence            4444444

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.86  E-value=20  Score=42.04  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHH
Q 039206           89 ERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLE  168 (645)
Q Consensus        89 e~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ie  168 (645)
                      ++++.++.+.+.+-..+.....+.+.++-.+.++..--. .+..-.--+++..++.++.+--++++...+.-..+...++
T Consensus        95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~q  173 (916)
T KOG0249|consen   95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLE  173 (916)
T ss_pred             HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444433211 1111111112223333333333333321111123555666


Q ss_pred             HhHHHHHHHHHHHHHHHH
Q 039206          169 SLDGEVRESEKELVLMKE  186 (645)
Q Consensus       169 ei~~eI~~~e~~ie~~ek  186 (645)
                      +...++.++..+.+.-+.
T Consensus       174 e~naeL~rarqreemnee  191 (916)
T KOG0249|consen  174 ELNAELQRARQREKMNEE  191 (916)
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence            677777777766665333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=91.79  E-value=14  Score=36.16  Aligned_cols=84  Identities=17%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS  246 (645)
Q Consensus       167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~  246 (645)
                      .+.++-+...+..+|+....++..++..+......+.-.++....+..+....+.++......+..+..++...+.+++.
T Consensus        44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k  123 (177)
T PF13870_consen   44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK  123 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555566655555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHH
Q 039206          247 LQST  250 (645)
Q Consensus       247 l~ee  250 (645)
                      +...
T Consensus       124 ~~~~  127 (177)
T PF13870_consen  124 LRKQ  127 (177)
T ss_pred             HHHH
Confidence            5544

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=91.75  E-value=21  Score=38.28  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=10.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHH
Q 039206          165 KRLESLDGEVRESEKELVLMKEQ  187 (645)
Q Consensus       165 ~~ieei~~eI~~~e~~ie~~eke  187 (645)
                      .+-..+++.+..+-...+..+.+
T Consensus       135 ~eN~~L~eKlK~l~eQye~rE~~  157 (309)
T PF09728_consen  135 EENEELREKLKSLIEQYELREEH  157 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555443333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.68  E-value=26  Score=39.10  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=10.5

Q ss_pred             HHHhhhhHHhhHHHHHHH
Q 039206          328 VREFELREREFDSLRKAV  345 (645)
Q Consensus       328 ~~eLE~~n~e~~~~~~~~  345 (645)
                      .++++....-|+.+-.++
T Consensus       348 ~r~~~~~~~~y~~ll~r~  365 (444)
T TIGR03017       348 QRDVENAQRAYDAAMQRY  365 (444)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444555556666666666

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=91.45  E-value=20  Score=37.36  Aligned_cols=56  Identities=25%  Similarity=0.223  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          224 ELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI  279 (645)
Q Consensus       224 eel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l  279 (645)
                      ..+...+.++..++..+++-+.+..........-...-...+..+...+..+.+.-
T Consensus       181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~  236 (264)
T PF06008_consen  181 EAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQ  236 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555444433333333333333333333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=91.38  E-value=9.9  Score=35.09  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=8.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHH
Q 039206          169 SLDGEVRESEKELVLMKEQKA  189 (645)
Q Consensus       169 ei~~eI~~~e~~ie~~ekeie  189 (645)
                      .+.+.|+++++.+..+..++.
T Consensus        20 ~L~s~lr~~E~E~~~l~~el~   40 (120)
T PF12325_consen   20 RLQSQLRRLEGELASLQEELA   40 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444433333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.35  E-value=29  Score=39.09  Aligned_cols=22  Identities=9%  Similarity=0.101  Sum_probs=9.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 039206           79 DVDMKIRLLDERAKEIENKESE  100 (645)
Q Consensus        79 ~v~~~~~~~ee~~~~~e~~~~e  100 (645)
                      ++...+.++..+..++.++.++
T Consensus        98 ~~~~~~~~~~~~~~~~~rL~a~  119 (457)
T TIGR01000        98 QKQLLEQQLDNLKDQKKSLDTL  119 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=91.32  E-value=48  Score=41.56  Aligned_cols=11  Identities=27%  Similarity=0.531  Sum_probs=4.9

Q ss_pred             hCCCCCcchhh
Q 039206          527 LGFADEVPVMH  537 (645)
Q Consensus       527 lgl~~ki~~~v  537 (645)
                      .|++.+++++.
T Consensus      1010 v~iisH~~~l~ 1020 (1047)
T PRK10246       1010 IGVISHVEAMK 1020 (1047)
T ss_pred             EEEEecHHHHH
Confidence            34444444443

>PRK12704 phosphodiesterase; Provisional

Probab=91.23  E-value=32  Score=39.67  Aligned_cols=6  Identities=17%  Similarity=0.208  Sum_probs=2.2

Q ss_pred             hHhhhh
Q 039206           47 PHEQLG   52 (645)
Q Consensus        47 ~~~~~~   52 (645)
                      .+.++.
T Consensus        36 Ae~eAe   41 (520)
T PRK12704         36 AEEEAK   41 (520)
T ss_pred             HHHHHH
Confidence            333333

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=91.00  E-value=36  Score=39.47  Aligned_cols=13  Identities=31%  Similarity=0.549  Sum_probs=6.7

Q ss_pred             HHHHHcCCCCccc
Q 039206          613 KLCRSLGFADKVP  625 (645)
Q Consensus       613 ~l~~~lgl~~k~p  625 (645)
                      +..|++.|++-.|
T Consensus       721 eWLrsiDLAEytp  733 (861)
T KOG1899|consen  721 EWLRSIDLAEYTP  733 (861)
T ss_pred             HHHHhccHHHhCc
Confidence            4445555554444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.00  E-value=11  Score=41.15  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          229 FMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL  293 (645)
Q Consensus       229 ~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el  293 (645)
                      +.+-+...|..+-.+....+.++...+.........+.+...++..+.+.++....+++++.+.+
T Consensus       260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m  324 (359)
T PF10498_consen  260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM  324 (359)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33333334443333333333333333333444444444444444444444444444444444443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.90  E-value=1.6  Score=43.92  Aligned_cols=73  Identities=19%  Similarity=0.130  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206           79 DVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus        79 ~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      ........+++..++-+.+-.++++++.++++.++.+..++.+...+...+..+-.+...+++...+++...+
T Consensus       136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         136 DYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            3333444566666666666667777777777777777777777777777777777777777777776665543

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=90.69  E-value=20  Score=36.17  Aligned_cols=18  Identities=39%  Similarity=0.619  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHhHHHH
Q 039206          195 IEACTEKLEAIEESYDAV  212 (645)
Q Consensus       195 IE~~e~ei~e~~e~ie~l  212 (645)
                      ++++..++.....++..+
T Consensus       120 ~~ey~~~l~~~eqry~aL  137 (207)
T PF05010_consen  120 IEEYEERLKKEEQRYQAL  137 (207)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333433333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=90.61  E-value=11  Score=39.47  Aligned_cols=105  Identities=21%  Similarity=0.288  Sum_probs=56.2

Q ss_pred             HHHhHHHHHhhhcchHhhhh-hHHHHHHHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           33 AELKKETLRRSFDLPHEQLG-LFTAQWIQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDC  111 (645)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~  111 (645)
                      ..|++..+..-++.+.+=-+ -+...|+.+.++.+..-+.    ..+.-       +.+..+.+.....++..+.+++..
T Consensus       144 ~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e----~~~~~-------~~~e~eke~~~r~l~~~~~ELe~~  212 (269)
T PF05278_consen  144 KELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKE----IYDQH-------ETREEEKEEKDRKLELKKEELEEL  212 (269)
T ss_pred             hhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47777777777777776554 6778887777777665433    01111       222333333444444444555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206          112 NFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN  148 (645)
Q Consensus       112 ~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~  148 (645)
                      ..++...+.++..++..|.++.+.+..++.+-..+.+
T Consensus       213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k  249 (269)
T PF05278_consen  213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK  249 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555444444444333

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=90.39  E-value=25  Score=36.63  Aligned_cols=19  Identities=26%  Similarity=0.377  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 039206          233 LLVKLRLYEDNLQSLQSTV  251 (645)
Q Consensus       233 le~El~~lr~e~e~l~eel  251 (645)
                      +...|..+...+..+..-+
T Consensus       183 i~~~L~~~~~kL~Dl~~~l  201 (264)
T PF06008_consen  183 IRDDLNDYNAKLQDLRDLL  201 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444443

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.39  E-value=34  Score=40.26  Aligned_cols=82  Identities=13%  Similarity=0.121  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhh
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQS  138 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~  138 (645)
                      ++.....++....   .......+++..+.+..+.-+..+-.|...+..+-....+-.+...--++++..+......+--
T Consensus        33 ~e~~~~~ar~~~~---~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq  109 (916)
T KOG0249|consen   33 LEHSLPEARKDLI---KAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ  109 (916)
T ss_pred             HHhhhhhhHHHHH---HHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch
Confidence            4455555555555   4445556666666666666666666666666666555554444444444444444444444333


Q ss_pred             HHHHH
Q 039206          139 KEDEL  143 (645)
Q Consensus       139 le~eL  143 (645)
                      .++..
T Consensus       110 ~eekn  114 (916)
T KOG0249|consen  110 NEEKN  114 (916)
T ss_pred             hHHhh
Confidence            33333

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=90.31  E-value=59  Score=40.86  Aligned_cols=16  Identities=13%  Similarity=0.243  Sum_probs=8.7

Q ss_pred             hhHHHHHHHHHHhhhh
Q 039206          137 QSKEDELNLVKNSAEK  152 (645)
Q Consensus       137 ~~le~eL~~le~ei~~  152 (645)
                      .+....+.+++..+..
T Consensus       147 ~~~~~~l~~i~~~L~~  162 (1109)
T PRK10929        147 TEARRQLNEIERRLQT  162 (1109)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            5555556666555443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.07  E-value=23  Score=35.66  Aligned_cols=72  Identities=25%  Similarity=0.351  Sum_probs=44.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHh
Q 039206           78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNS  149 (645)
Q Consensus        78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~e  149 (645)
                      -+|+.+..+|-+...++..+..+|-.+...+.+........+..+..+........-++..-+.+|.....+
T Consensus        10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E   81 (202)
T PF06818_consen   10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE   81 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence            456666677777777766666666666666666666666666666666665555555555555555444433

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.81  E-value=15  Score=33.14  Aligned_cols=63  Identities=16%  Similarity=0.173  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST  250 (645)
Q Consensus       188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee  250 (645)
                      +..++..|+..+....++..+.+.+...+..++.+..+...++.++..++.++...++..+..
T Consensus        18 La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~a   80 (107)
T PF09304_consen   18 LASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQA   80 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666666666666777777777777777888888888888888777776666

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=89.76  E-value=32  Score=37.01  Aligned_cols=18  Identities=22%  Similarity=0.298  Sum_probs=14.2

Q ss_pred             cchhhHhHHHHHHHHHhh
Q 039206          433 EFDVSIIRRTCILLLEQL  450 (645)
Q Consensus       433 ~~~~~~~r~~cillLE~L  450 (645)
                      +...++.+.-|.-|||.+
T Consensus       271 ~~s~sdLksl~~aLle~i  288 (319)
T PF09789_consen  271 PQSISDLKSLATALLETI  288 (319)
T ss_pred             cchHHHHHHHHHHHHHHh
Confidence            345677888999999988

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=89.65  E-value=19  Score=34.23  Aligned_cols=63  Identities=13%  Similarity=0.142  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          218 SEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIE  280 (645)
Q Consensus       218 e~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le  280 (645)
                      =.+.+++.++.+|..++.+|.-+.........+|..+.....++.++...+-..+..|....+
T Consensus        81 P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE  143 (159)
T PF04949_consen   81 PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE  143 (159)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347778888888888888888888888888888666666666666665555555555544443

This entry represents proteins annotated as RAB6-interacting golgins.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.45  E-value=16  Score=32.96  Aligned_cols=64  Identities=14%  Similarity=0.118  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          233 LLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSV  296 (645)
Q Consensus       233 le~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~  296 (645)
                      +...++.+...++..+.....+.++.+.++..+..++.+......++..+..+|.++...+.+.
T Consensus        14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e   77 (107)
T PF09304_consen   14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE   77 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444443333444666666666666666666666665555665555555443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.44  E-value=26  Score=39.07  Aligned_cols=99  Identities=14%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206          195 IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCR  274 (645)
Q Consensus       195 IE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~  274 (645)
                      +++..........+..+++.+....+++-...+.+..++..+++...+++...++.-..+.++.....+.+..++.... 
T Consensus       349 len~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~-  427 (493)
T KOG0804|consen  349 LENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK-  427 (493)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-
Confidence            3333333333333333444444444444444455555555555555555555554544444445555554444443333 


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHH
Q 039206          275 IQERIEESSQELLLKENQLKSV  296 (645)
Q Consensus       275 l~~~le~~~~ei~e~e~el~~~  296 (645)
                        ........+|.++++|+.++
T Consensus       428 --~~~~s~d~~I~dLqEQlrDl  447 (493)
T KOG0804|consen  428 --EALGSKDEKITDLQEQLRDL  447 (493)
T ss_pred             --HHHHHHHHHHHHHHHHHHhH
Confidence              23333344555555555444

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=88.90  E-value=28  Score=36.12  Aligned_cols=23  Identities=26%  Similarity=0.328  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 039206          220 KRELELTQTFMKDLLVKLRLYED  242 (645)
Q Consensus       220 e~ELeel~~~i~ele~El~~lr~  242 (645)
                      +.+|..-+.....+..+...++.
T Consensus        25 ~~~L~e~e~~a~~Leek~k~aee   47 (246)
T PF00769_consen   25 QEALEESEETAEELEEKLKQAEE   47 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=88.84  E-value=50  Score=38.00  Aligned_cols=8  Identities=25%  Similarity=0.339  Sum_probs=3.0

Q ss_pred             HHHHHHHh
Q 039206          559 VAGEWKEK  566 (645)
Q Consensus       559 ~a~~wk~~  566 (645)
                      +|.+.+.+
T Consensus       481 la~~i~~~  488 (514)
T TIGR03319       481 LARDIAKK  488 (514)
T ss_pred             HHHHHHHH
Confidence            33333333

>PF14992 TMCO5: TMCO5 family

Probab=88.74  E-value=35  Score=36.01  Aligned_cols=40  Identities=23%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             HHHHHHHHhhcCCCCCChHHHHHHHHhhhccccchHHHhhhC
Q 039206          487 LGFLHLLAAYKLASAFDGNELASLLDIVANHRQTPKLRRSLG  528 (645)
Q Consensus       487 l~fL~~la~ygi~~~f~~del~~l~~~v~~~~~~~~L~~~lg  528 (645)
                      .++|-.+..|  +.+++.|-+..++..+-.|+..-.|..-|+
T Consensus       229 ~~LL~y~~f~--~~fInpdll~~~LP~~L~R~tlw~LR~~l~  268 (280)
T PF14992_consen  229 TRLLGYLLFY--IQFINPDLLEDVLPKMLSRRTLWRLREFLF  268 (280)
T ss_pred             HHHHHHHHHH--HhhcCcHHHHHHhHHhcchhHHHHHHHHHh
Confidence            3444444555  677888999999998888888777766543

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=88.64  E-value=31  Score=35.37  Aligned_cols=26  Identities=19%  Similarity=0.265  Sum_probs=10.3

Q ss_pred             HHHHHHHHHhHhHHHHhhHHHHHHHH
Q 039206          121 ELGFVRKRIGVCNSELQSKEDELNLV  146 (645)
Q Consensus       121 el~~l~~~i~e~~~el~~le~eL~~l  146 (645)
                      ....++..|+.--.++..+.++|..+
T Consensus        39 ~~~~~~~~i~~aP~~~~~l~~~l~~l   64 (240)
T PF12795_consen   39 RAAEYQKQIDQAPKEIRELQKELEAL   64 (240)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence            33333333333344444444444433

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=88.56  E-value=29  Score=34.94  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             HHHHHhhhcchHhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-
Q 039206           37 KETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLV----EKKIK-  109 (645)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~----e~~le-  109 (645)
                      +-+++.-++.+++=...+...+  ++..+..++..+.   ..-..-.+.++++++....+..........    +.++. 
T Consensus        11 ~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a---~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr   87 (221)
T PF04012_consen   11 KANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALA---RVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAR   87 (221)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3444444444444332333333  5555555555555   444455555555555555555554433322    11111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206          110 DCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus       110 e~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      ..-......+..+..+...++.....+..++..|..++..|.
T Consensus        88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~  129 (221)
T PF04012_consen   88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLE  129 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233334444444444444444444444444444444433

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=87.99  E-value=34  Score=35.06  Aligned_cols=91  Identities=12%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKE------------IENKESELVLVEKKIKDCNFELACKEKELGFVR  126 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~------------~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~  126 (645)
                      ...........+.   ++-.++......|+.....            .+.++..|......+......+......+..+.
T Consensus        36 ~~~~~~~~~~~i~---~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~  112 (240)
T PF12795_consen   36 QKKRAAEYQKQID---QAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQ  112 (240)
T ss_pred             HHHHHHHHHHHHH---HhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444   4444555555555444332            445555666666666666666666666666666


Q ss_pred             HHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206          127 KRIGVCNSELQSKEDELNLVKNSAEK  152 (645)
Q Consensus       127 ~~i~e~~~el~~le~eL~~le~ei~~  152 (645)
                      ...+.....+.+....+.++...+..
T Consensus       113 ~~p~~aq~~l~~~~~~l~ei~~~L~~  138 (240)
T PF12795_consen  113 TRPERAQQQLSEARQRLQEIRNQLQN  138 (240)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66666666666666666666666654

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.79  E-value=50  Score=36.68  Aligned_cols=13  Identities=23%  Similarity=0.123  Sum_probs=6.1

Q ss_pred             HhHHHHHHHHHHH
Q 039206           78 IDVDMKIRLLDER   90 (645)
Q Consensus        78 ~~v~~~~~~~ee~   90 (645)
                      ..|+-+++...++
T Consensus       222 ~kv~flerkv~el  234 (502)
T KOG0982|consen  222 RKVRFLERKVQEL  234 (502)
T ss_pred             HHHHHHHHHHHHh
Confidence            4444444444443

>PRK10869 recombination and repair protein; Provisional

Probab=87.52  E-value=63  Score=37.56  Aligned_cols=12  Identities=17%  Similarity=0.404  Sum_probs=8.0

Q ss_pred             CchhhHhhhhcC
Q 039206          410 DPALLVLDAMSG  421 (645)
Q Consensus       410 dPa~LVLd~~e~  421 (645)
                      +|.-+|+|-+..
T Consensus       452 ~~~~li~DEpd~  463 (553)
T PRK10869        452 ETPALIFDEVDV  463 (553)
T ss_pred             CCCEEEEECCCC
Confidence            567777776554

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.38  E-value=69  Score=37.87  Aligned_cols=30  Identities=10%  Similarity=-0.003  Sum_probs=22.8

Q ss_pred             HHHHHHcCCCCccchhHHHHHHhccccchh
Q 039206          612 PKLCRSLGFADKVPGKLSVIEIQMYWLQLV  641 (645)
Q Consensus       612 ~~l~~~lgl~~k~p~~i~~l~~~~~~~~av  641 (645)
                      +..-+.++.+.+-|+....+....-.+..|
T Consensus       620 ~~~~r~~~~~~~~~~~s~k~~~~~~~~~~s  649 (660)
T KOG4302|consen  620 SEKKRLLSKSSSSPDTSGKLNSPPNEPEFS  649 (660)
T ss_pred             hhhhcccchhccCCchhhhhcCCCCCcccc
Confidence            456677888899999888888877666554

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=86.92  E-value=43  Score=37.97  Aligned_cols=8  Identities=25%  Similarity=-0.110  Sum_probs=4.0

Q ss_pred             cCCCCCCC
Q 039206          420 SGFYPPHS  427 (645)
Q Consensus       420 e~~~~~~~  427 (645)
                      +.+|++++
T Consensus       430 ~~~~~p~S  437 (596)
T KOG4360|consen  430 GMPGQPGS  437 (596)
T ss_pred             CCCCCCCC
Confidence            44555554

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=86.52  E-value=1e+02  Score=38.91  Aligned_cols=16  Identities=19%  Similarity=0.194  Sum_probs=8.0

Q ss_pred             hHhHHHHhhHHHHHHH
Q 039206          130 GVCNSELQSKEDELNL  145 (645)
Q Consensus       130 ~e~~~el~~le~eL~~  145 (645)
                      .+....+.+++..+..
T Consensus       147 ~~~~~~l~~i~~~L~~  162 (1109)
T PRK10929        147 TEARRQLNEIERRLQT  162 (1109)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            4445555555554444

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=86.23  E-value=70  Score=36.78  Aligned_cols=11  Identities=9%  Similarity=0.036  Sum_probs=6.1

Q ss_pred             hHHHHhhCCCc
Q 039206          401 VFDTIRKAADP  411 (645)
Q Consensus       401 ~~~AL~~a~dP  411 (645)
                      +|.++...|.+
T Consensus       456 ~~~~~~~~~~d  466 (511)
T PF09787_consen  456 VPLLMKDSPHD  466 (511)
T ss_pred             hhhhccCCCcc
Confidence            66666655433

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=86.13  E-value=59  Score=35.89  Aligned_cols=19  Identities=21%  Similarity=0.628  Sum_probs=10.5

Q ss_pred             hHHHHHhhHHHHHHHHHHh
Q 039206          313 ELISVGKSIRQFEERVREF  331 (645)
Q Consensus       313 el~~v~~~i~~le~~~~eL  331 (645)
                      .+..|+.+++.++.+|.+|
T Consensus       369 N~~~i~~n~~~le~Ri~~L  387 (388)
T PF04912_consen  369 NMETIEKNVKKLEERIAKL  387 (388)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            4455555556665555544

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=86.13  E-value=97  Score=38.35  Aligned_cols=115  Identities=24%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchh
Q 039206           78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELA--CKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPK  155 (645)
Q Consensus        78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~--~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~  155 (645)
                      .+-=+|...+-++-.+|++++.++...+....=+-.+=.  ..+.+.......|++...++..+++.|..+.......  
T Consensus       397 NQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~--  474 (1041)
T KOG0243|consen  397 NQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ--  474 (1041)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence            344466677777777777777777666555443332222  2344555555566666666666666666655544322  


Q ss_pred             hhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          156 RLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMI  195 (645)
Q Consensus       156 ~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eI  195 (645)
                       ++.+..++++.+.++..+......++..++++..++..+
T Consensus       475 -~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l  513 (1041)
T KOG0243|consen  475 -LEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL  513 (1041)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222344555555555555555555554444444444443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=85.85  E-value=54  Score=35.12  Aligned_cols=84  Identities=15%  Similarity=0.172  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 039206          161 KEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLES-EKRELELTQTFMKDLLVKLRL  239 (645)
Q Consensus       161 ~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee-~e~ELeel~~~i~ele~El~~  239 (645)
                      +-|-++|..++.+-+.+-..++.-+.-      ....+..++..+..++..++..++. .+..+..+...+..+..+...
T Consensus        80 N~LlKkl~~l~keKe~L~~~~e~EEE~------ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~  153 (310)
T PF09755_consen   80 NTLLKKLQQLKKEKETLALKYEQEEEF------LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSA  153 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            445555655555554444333211111      1122233333333333344433333 223344455555554444444


Q ss_pred             HHHHHHHHHHH
Q 039206          240 YEDNLQSLQST  250 (645)
Q Consensus       240 lr~e~e~l~ee  250 (645)
                      ++..++.+..+
T Consensus       154 ~q~~le~Lr~E  164 (310)
T PF09755_consen  154 KQEELERLRRE  164 (310)
T ss_pred             hHHHHHHHHHH
Confidence            44444444333

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=85.54  E-value=13  Score=34.53  Aligned_cols=77  Identities=16%  Similarity=0.181  Sum_probs=39.0

Q ss_pred             HhhhhhHHHHH--HHHHHHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           48 HEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFV  125 (645)
Q Consensus        48 ~~~~~~~~~~~--~e~~~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l  125 (645)
                      .+-.+++..++  +-+.+.++++.++      .+|......+++...-...+..++..+..+++.+..++..+..-...|
T Consensus        42 ~~A~~~v~kql~~vs~~l~~tKkhLs------qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L  115 (126)
T PF07889_consen   42 SDAVASVSKQLEQVSESLSSTKKHLS------QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL  115 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            33444555566  6666666666555      555555555555555544444444444444444444444444444444


Q ss_pred             HHHHh
Q 039206          126 RKRIG  130 (645)
Q Consensus       126 ~~~i~  130 (645)
                      +.+|.
T Consensus       116 e~ki~  120 (126)
T PF07889_consen  116 EGKID  120 (126)
T ss_pred             HHHHH
Confidence            44443

The region featured in this family is approximately 100 amino acids long.

>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12)

Probab=85.31  E-value=41  Score=35.93  Aligned_cols=51  Identities=10%  Similarity=0.261  Sum_probs=25.1

Q ss_pred             HHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          141 DELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIE  196 (645)
Q Consensus       141 ~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE  196 (645)
                      +.|+++..++..++-     +++...|...+..|....+.|+.++++|++++..|.
T Consensus        55 ~~ld~~~~kl~~Ms~-----~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~  105 (301)
T PF06120_consen   55 DSLDELKEKLKEMSS-----TQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK  105 (301)
T ss_pred             HhhHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666663     334444444444444444444444444444444443

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=85.21  E-value=81  Score=36.59  Aligned_cols=35  Identities=11%  Similarity=0.078  Sum_probs=26.7

Q ss_pred             hccccCCchHHHHHHHHHHHhhcCCCCCChHHHHH
Q 039206          475 NMEDTVKDSLVVLGFLHLLAAYKLASAFDGNELAS  509 (645)
Q Consensus       475 ~i~~~~~~sl~al~fL~~la~ygi~~~f~~del~~  509 (645)
                      ++.+||+-|=-.||+=-.++.++-.|..=+|||+.
T Consensus       430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~  464 (557)
T COG0497         430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDT  464 (557)
T ss_pred             hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccC
Confidence            34578888888888888888887666666677764

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=84.64  E-value=40  Score=32.66  Aligned_cols=9  Identities=44%  Similarity=0.460  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 039206          173 EVRESEKEL  181 (645)
Q Consensus       173 eI~~~e~~i  181 (645)
                      +..++.+.+
T Consensus        28 E~~~l~~EL   36 (159)
T PF05384_consen   28 EYERLRKEL   36 (159)
T ss_pred             HHHHHHHHH
Confidence            333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.50  E-value=23  Score=29.71  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206          196 EACTEKLEAIEESYDAVKAKLESEKRE  222 (645)
Q Consensus       196 E~~e~ei~e~~e~ie~le~eIee~e~E  222 (645)
                      +.++.+|...-..|..++.++++.+.+
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~   33 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEK   33 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444443333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.40  E-value=18  Score=38.60  Aligned_cols=15  Identities=20%  Similarity=0.302  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHhc
Q 039206          462 QGEALKVAVEWKKNM  476 (645)
Q Consensus       462 ke~A~~lA~~WK~~i  476 (645)
                      ...|.+.-.+.|=++
T Consensus       278 qrdanrqisd~KfKl  292 (302)
T PF09738_consen  278 QRDANRQISDYKFKL  292 (302)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            334444444444433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=84.26  E-value=47  Score=37.12  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhhhhhcCCchHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHh
Q 039206           59 IQELFDLTMKSLEKQSSSSIDVDMKIR-LLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ  137 (645)
Q Consensus        59 ~e~~~~~~r~~~~~~~~~~~~v~~~~~-~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~  137 (645)
                      +.+++++-|+-.+      ..+..++. +++......+.+-.+...++.+...++......+..+..++..+.++.+++.
T Consensus       326 l~sqleSqr~y~e------~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~  399 (493)
T KOG0804|consen  326 LTSQLESQRKYYE------QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK  399 (493)
T ss_pred             hhhhhhHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555544      33333333 5555555555555555555555555555555566666666555555555554


Q ss_pred             hHH
Q 039206          138 SKE  140 (645)
Q Consensus       138 ~le  140 (645)
                      ..+
T Consensus       400 ~~~  402 (493)
T KOG0804|consen  400 EER  402 (493)
T ss_pred             HHH
Confidence            444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=83.74  E-value=64  Score=34.27  Aligned_cols=20  Identities=10%  Similarity=0.077  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 039206          109 KDCNFELACKEKELGFVRKR  128 (645)
Q Consensus       109 ee~~~e~~~~~~el~~l~~~  128 (645)
                      +.++.+++++...++..-.+
T Consensus        87 erLEtEiES~rsRLaaAi~d  106 (305)
T PF14915_consen   87 ERLETEIESYRSRLAAAIQD  106 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            33444444444444443333

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=83.56  E-value=83  Score=35.40  Aligned_cols=49  Identities=14%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          202 LEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST  250 (645)
Q Consensus       202 i~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee  250 (645)
                      +..+.+-.+..++.+.+.+.+-+.++-.++.+...+..|+++...-.++
T Consensus       392 lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq  440 (527)
T PF15066_consen  392 LQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ  440 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3333333444444445555555555555555555555555544443333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=83.40  E-value=1.5  Score=46.87  Aligned_cols=75  Identities=12%  Similarity=0.203  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhh
Q 039206          258 LECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFE  332 (645)
Q Consensus       258 le~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE  332 (645)
                      +..+...+..++..++.+...+..++.-+......|..++..+.....++.....++....-+|..++.++.+||
T Consensus        79 L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE  153 (326)
T PF04582_consen   79 LNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE  153 (326)
T ss_dssp             ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence            333333333333333333333333333333333333333333333333333334444445555556666666655

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=82.64  E-value=40  Score=33.52  Aligned_cols=41  Identities=22%  Similarity=0.214  Sum_probs=23.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACK  118 (645)
Q Consensus        78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~  118 (645)
                      .....+...++.+..+++.+..++..++..|+.....+..-
T Consensus        62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~  102 (188)
T PF03962_consen   62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES  102 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            45555556666666666666666666665555554444433

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=82.47  E-value=43  Score=35.17  Aligned_cols=64  Identities=20%  Similarity=0.072  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHH
Q 039206           82 MKIRLLDERAKEIENKESELVLVEKKIKDCNF-------ELACKEKELGFVRKRIGVCNSELQSKEDELNL  145 (645)
Q Consensus        82 ~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~-------e~~~~~~el~~l~~~i~e~~~el~~le~eL~~  145 (645)
                      ....+--.+...|+.+..+++..++.|..+..       +.+.++.+|..+=...-.+-.-+..++..|+.
T Consensus       187 ~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~  257 (267)
T PF10234_consen  187 NLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEE  257 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            33333333344444444444444444444443       44444444444433333444444444444443

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF14992 TMCO5: TMCO5 family

Probab=82.03  E-value=73  Score=33.67  Aligned_cols=7  Identities=14%  Similarity=0.382  Sum_probs=2.7

Q ss_pred             HHHHHhh
Q 039206          444 ILLLEQL  450 (645)
Q Consensus       444 illLE~L  450 (645)
                      ++-|.++
T Consensus       260 lw~LR~~  266 (280)
T PF14992_consen  260 LWRLREF  266 (280)
T ss_pred             HHHHHHH
Confidence            3334433

>PRK00106 hypothetical protein; Provisional

Probab=81.78  E-value=1.1e+02  Score=35.50  Aligned_cols=13  Identities=23%  Similarity=0.539  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHhhc
Q 039206          485 VVLGFLHLLAAYK  497 (645)
Q Consensus       485 ~al~fL~~la~yg  497 (645)
                      -.+|=|.+-.+||
T Consensus       336 ~~lg~l~~r~sy~  348 (535)
T PRK00106        336 KIMGRLQFRTSYG  348 (535)
T ss_pred             HHHHHHhhhccCC
Confidence            3344444444443

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=81.73  E-value=48  Score=32.41  Aligned_cols=30  Identities=27%  Similarity=0.299  Sum_probs=16.3

Q ss_pred             hhcchhhHHHhHHHHhHHHHHhhhcchHhh
Q 039206           21 LSSGLVLVELRVAELKKETLRRSFDLPHEQ   50 (645)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   50 (645)
                      +||-++.-.|+---|.+.-+-..++.|.++
T Consensus        23 ~ssq~v~~~lq~e~lgktavqk~Ld~La~~   52 (201)
T KOG4603|consen   23 YSSQDVFGNLQREHLGKTAVQKTLDQLAQQ   52 (201)
T ss_pred             CchHHHHHHHHHHhccchHHHHHHHHHHHc
Confidence            455555555555555555555555555443

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=81.50  E-value=71  Score=33.19  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhHhHHHHhhHHHHHHHHHHhhh
Q 039206           85 RLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGF-------------VRKRIGVCNSELQSKEDELNLVKNSAE  151 (645)
Q Consensus        85 ~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~-------------l~~~i~e~~~el~~le~eL~~le~ei~  151 (645)
                      .+.++..++...+--.+..++.+..++...+..+.....=             +.-.+.++.+++....+.|++...+|.
T Consensus       122 qQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~Qnels  201 (330)
T KOG2991|consen  122 QQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELS  201 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3455566666677778888888888888888888776532             334457888888888888888888888


Q ss_pred             hch
Q 039206          152 KWP  154 (645)
Q Consensus       152 ~~~  154 (645)
                      -+.
T Consensus       202 Awk  204 (330)
T KOG2991|consen  202 AWK  204 (330)
T ss_pred             eee
Confidence            776

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.47  E-value=25  Score=33.98  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=14.1

Q ss_pred             hHHHhHHHHhHHHHHhhhcchHhh
Q 039206           27 LVELRVAELKKETLRRSFDLPHEQ   50 (645)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~   50 (645)
                      ...|.. ++.|...-+-++.|.++
T Consensus        23 ~~nL~~-~~~K~~v~k~Ld~L~~~   45 (169)
T PF07106_consen   23 FDNLHN-KVGKTAVQKALDSLVEE   45 (169)
T ss_pred             HHHHHh-hccHHHHHHHHHHHHhC
Confidence            344444 56667777777666665

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this

Probab=81.31  E-value=16  Score=39.39  Aligned_cols=84  Identities=20%  Similarity=0.311  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhchhhhhchHHHHHHHHHhHHHHHH
Q 039206           97 KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRE  176 (645)
Q Consensus        97 ~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~~~le~k~el~~~ieei~~eI~~  176 (645)
                      +..|.++++++..++++.-......++++.+.-+.+.+.+..-.+++..+...+...+....  ++-...+++++.+|.+
T Consensus         2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~--~e~~~~i~~L~~~Ik~   79 (330)
T PF07851_consen    2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLS--AEERELIEKLEEDIKE   79 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--hhHHHHHHHHHHHHHH
Confidence            34566777777777777788888888888888888888888888888888887777653222  3444555555555555


Q ss_pred             HHHHHH
Q 039206          177 SEKELV  182 (645)
Q Consensus       177 ~e~~ie  182 (645)
                      ....+.
T Consensus        80 r~~~l~   85 (330)
T PF07851_consen   80 RRCQLF   85 (330)
T ss_pred             HHhhHH
Confidence            444443

; GO: 0016021 integral to membrane

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=80.80  E-value=28  Score=28.90  Aligned_cols=34  Identities=6%  Similarity=-0.035  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          217 ESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST  250 (645)
Q Consensus       217 ee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee  250 (645)
                      .+++..+..+..++...+.....+..+++.....
T Consensus         8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~   41 (69)
T PF14197_consen    8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQ   41 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	645
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	8e-04
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 2e-14
 Identities = 66/465 (14%), Positives = 141/465 (30%), Gaps = 145/465 (31%)

Query: 240 YEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLAC 299
           Y+D L   +       +  +CK+                +++  + +L KE         
Sbjct: 18  YKDILSVFEDAFV---DNFDCKD----------------VQDMPKSILSKEE-------- 50

Query: 300 IEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKL 359
           I+            L      + + EE V++F             VE+    L +  K L
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF-------------VEEV---LRINYKFL 94

Query: 360 SDILQLHPKRSAAPENLTSSGRNLQILLNQHLRRHDVIFCNVFDTIRKA---ADPA-LLV 415
              ++   ++ +    +    R+     NQ   +++V     +  +R+A     PA  ++
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 416 LDAMSGF---------YPPHSREGYVEFDV---SIIRRTCI-LLLEQLSSL----APEIN 458
           +D + G             +  +  ++F +   ++        +LE L  L     P   
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 459 SQV-QGEALKVAVEWKKN------MEDTVKDSLVVLGFLHLLAAYKLASAFDGN------ 505
           S+      +K+ +   +            ++ L+VL  L++  A K  +AF+ +      
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNA-KAWNAFNLSCKILLT 271

Query: 506 -ELASLLDIV-ANHRQTPKL-RRSLGFADE--------VPVMHHEQLSDVASEINPLVRD 554
                + D + A       L   S+    +              + L       NP    
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--- 328

Query: 555 EAMKVAGE-----------WK----EKMRAAVENSLEVLGLLHLLGAFRLAPAFDGNELE 599
             + +  E           WK    +K+   +E+SL VL               +  E  
Sbjct: 329 -RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL---------------EPAEYR 372

Query: 600 SL---LAIVAEDRQTPKLCRSLGFADKVPGKLSVIEIQMYWLQLV 641
            +   L++                   +P  L    + + W  ++
Sbjct: 373 KMFDRLSVFPPSA-------------HIPTIL----LSLIWFDVI 400

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.9 bits (183), Expect = 5e-14
 Identities = 88/642 (13%), Positives = 202/642 (31%), Gaps = 176/642 (27%)

Query: 60  QELF--DLTMKSLE---KQSSSSIDVD--MKIRLLDERAKEI----ENKESELV--LVEK 106
           ++ F  +   K ++   K   S  ++D  +  +        +     +K+ E+V   VE+
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 107 KIKDCNFELACKEKELGFVRKRIGV-CNS---ELQSKEDELNLVKNSAEKWPK----RLN 158
            ++  N+          F+   I           +   ++ + + N  + + K    RL 
Sbjct: 86  VLRI-NY---------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 159 LKKEKQKRLESLDGEVRESEKELVL--M----KEQKASIRAMIEACTEKLEAIEESYDAV 212
              + ++ L  L        K +++  +    K    +  A ++ C             V
Sbjct: 136 PYLKLRQALLELR-----PAKNVLIDGVLGSGK----TWVA-LDVCLS---------YKV 176

Query: 213 KAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREF 272
           + K++ +   L L      + +++       LQ L   +          +     +    
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLE------MLQKLLYQI----------DPNWTSRSDHS 220

Query: 273 CRIQERIEESSQEL--LLKENQLKSVLACIED-CSKED--------QV----KEKELISV 317
             I+ RI     EL  LLK    ++ L  + +  + +         ++    + K++   
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 318 GKSIRQFEERVREFE--LREREFDSLRKAVEDSSKNLELRQKKL-SDILQLHPKRSAAPE 374
             +       +      L   E  SL        K L+ R + L  ++L  +P       
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL------LLKYLDCRPQDLPREVLTTNP------- 327

Query: 375 NLTSS--GRNLQILLN--QHLRRHDVIFCNVFDTIRKAADPALLVLDAMSGFYPPHSREG 430
               S    +++  L    + +    + C+   TI +++   L VL+      P   R+ 
Sbjct: 328 -RRLSIIAESIRDGLATWDNWKH---VNCDKLTTIIESS---LNVLE------PAEYRKM 374

Query: 431 YVEF-----DVSIIRRT-CILLLEQLSSLAPEINSQVQGEALKVAVEWKKNMEDTVKDSL 484
           +           I      ++  + + S    + +++   +L    +  K    ++    
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIY 432

Query: 485 VVL-------GFLH--LLAAYKLASAFDGNELASL-LDI-VANHRQTPKLRRSLGFADEV 533
           + L         LH  ++  Y +   FD ++L    LD    +H                
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---------------- 476

Query: 534 PVMHH---EQLSDVASEINPLVRDEAMKVAGEW-KEKMRAAVENSLEVLGLLHLLGAFRL 589
            + HH    +  +  +    +  D        + ++K+R           +L+ L   + 
Sbjct: 477 -IGHHLKNIEHPERMTLFRMVFLDF------RFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 590 --------APAFDG--NELESLLAIVAEDRQTPKLCRSLGFA 621
                    P ++   N +   L  + E+    K    L  A
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 41/335 (12%), Positives = 93/335 (27%), Gaps = 82/335 (24%)

Query: 3   RRHSAVFDFA--YLVT--DIAILSSGLVLVELRVAELKKETLRRSFDLPHEQLGLFTAQW 58
            +    F+ +   L+T     +      L       +  +    +   P E   L   ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTD---FLSAATTTHISLDHHSMTLT-PDEVKSLL-LKY 310

Query: 59  I-QELFDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIEN-KESELVLVEKKIKDCNFELA 116
           +     DL     E  +++   + +    + +     +N K      +   I+     L 
Sbjct: 311 LDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 117 CKE-----KELGFVRKRIGV---------CNSELQSKEDELN-LVKNS-AEKWPKRLNLK 160
             E       L        +          +         +N L K S  EK PK     
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK----- 422

Query: 161 KEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEA-------CTEKLEAI-EESY--- 209
            E    + S+  E++   +    +       R++++         ++ L     + Y   
Sbjct: 423 -ESTISIPSIYLELKVKLENEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 210 -------DAVKAKLESEKRELELTQTFMK-----------------DLLVKLRLYEDNLQ 245
                  +    +  +  R + L   F++                 + L +L+ Y+  + 
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 246 SLQSTVRLRENELE-----CKEKELELKEREFCRI 275
                     N +       +E  +  K  +  RI
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.1 bits (182), Expect = 7e-14
 Identities = 39/297 (13%), Positives = 121/297 (40%), Gaps = 14/297 (4%)

Query: 67   MKSLEKQSSSSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVR 126
             + L+ ++    + +     L  + +E+E    E+    ++ ++ + +L  ++K++   +
Sbjct: 898  QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM---Q 954

Query: 127  KRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLK-KEKQKRLESLDGEVRESEKELVLMK 185
            +++     +L+ + +E    +   +      + K K+ +  +  ++ +  +  KE  L++
Sbjct: 955  QQM----LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 186  EQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQ 245
            E+ + +   +    EK + + +  +  ++ +   +  L+  +   ++L    R  E    
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

Query: 246  SLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSK 305
             L   +   + ++   + +L  KE E      R+E+ + +      +++ + + I D  +
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 306  EDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSDI 362
            + + ++       K  R   E +    L+      L   ++ ++   ELR     D 
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELE--ALKTE----LEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 43/283 (15%), Positives = 110/283 (38%), Gaps = 21/283 (7%)

Query: 83   KIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDE 142
            +   +  + +E++  +      E ++K+   +     +E   +++++          + E
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL----------QAE 904

Query: 143  LNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKL 202
              L   + E   +    K+E ++ L  ++  + E E+    ++ +K  ++  +    E+L
Sbjct: 905  TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964

Query: 203  EAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE 262
            E  E +    + KL+ EK   +     +K +   + + ED    L    +L E  +    
Sbjct: 965  EEEEAA----RQKLQLEKVTAD---GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 263  KELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIR 322
              L  +E +   + +   +    +   E +LK      ++  K  +  E E   + + I 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 323  QFEERVREFEL----REREFDSLRKAVEDSSKNLELRQKKLSD 361
            + + ++ E +     +E E  +    +ED +       KK+ +
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 43/316 (13%), Positives = 123/316 (38%), Gaps = 11/316 (3%)

Query: 29   ELRVAELKKETLRRSFDLPHEQLGLFTAQW--IQELFDLTMKSLEKQSSSSIDVDMKIRL 86
              + AE + + L +      E+  L   +     EL+    +   + ++   +++  +  
Sbjct: 872  RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931

Query: 87   LDERAKEIENKESELVLVEKKIKDCNFELACK----EKELGFVRKRIGVCNSELQSKEDE 142
            ++ R +E E +  +L   +KK++    +L  +    E     ++      + +++  ED+
Sbjct: 932  MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991

Query: 143  LNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKL 202
            + ++++   K  K    +K  ++R+  L   + E E++   + + K    +MI     +L
Sbjct: 992  ILIMEDQNNKLTKE---RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048

Query: 203  EAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKE 262
            +  E+S   ++      + E       + +L  ++   +  L   +  ++     LE + 
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108

Query: 263  KELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIR 322
             +     ++   ++  I +  ++L  ++           D S+E +  + EL     +  
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168

Query: 323  QFEE--RVREFELRER 336
              +E       +  ++
Sbjct: 1169 TQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 40/285 (14%), Positives = 112/285 (39%), Gaps = 5/285 (1%)

Query: 83   KIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSK-ED 141
            + +  +   KE+E K ++L   +  +++          E   +R R+     EL+    +
Sbjct: 872  RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931

Query: 142  ELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEK 201
                ++   E+  +    KK+ Q+++  L+ ++ E E     ++ +K +    I+   + 
Sbjct: 932  MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991

Query: 202  LEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECK 261
            +  +E+  + +  + +  +  +    T + +   K +         +S +   E  L+ +
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 262  EKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSI 321
            EK  +  E+   +++    +  +++   + Q+  + A +    +E Q     L       
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111

Query: 322  RQFEERVREFELR----EREFDSLRKAVEDSSKNLELRQKKLSDI 362
                +++RE E      + + +S + A   + K      ++L  +
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 48/256 (18%), Positives = 109/256 (42%), Gaps = 11/256 (4%)

Query: 135  ELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAM 194
            E+Q+K++EL   K   +K    L   ++K  +L     E    +++L    E  A    M
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCE---EKNLLQEKLQAETELYAEAEEM 914

Query: 195  IEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLR 254
                  K + +EE    ++A++E E+   +  Q   K +  ++   E+ L+  ++  +  
Sbjct: 915  RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 255  ENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKEL 314
            + E    + +++  E +   ++++  + ++E  L E ++  +   +    +E++ K    
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA--EEEEKAKNLT- 1031

Query: 315  ISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKLSD-ILQLHPKRSAAP 373
                K   + E  + E E+R ++ +  R+ +E   + LE     L + I +L  + +   
Sbjct: 1032 ----KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 374  ENLTSSGRNLQILLNQ 389
              L      LQ  L +
Sbjct: 1088 AQLAKKEEELQAALAR 1103

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 26/194 (13%), Positives = 79/194 (40%), Gaps = 4/194 (2%)

Query: 173  EVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKD 232
            +V   E+E+    E+    +   +    +L+ +E+ +  +  +    + +L+       +
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 233  LLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQ 292
                        Q L+  +   E  +E +E+  +  + E  ++Q+++ +  ++L  +E  
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 293  LKSVLACIEDCSKEDQVK--EKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSK 350
             + +    E  + + ++K  E +++ +     +  +  +  E R  +  +     E+ +K
Sbjct: 971  RQKLQL--EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 351  NLELRQKKLSDILQ 364
            NL   + K   ++ 
Sbjct: 1029 NLTKLKNKHESMIS 1042

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 30/204 (14%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 134  SELQSKEDELNLVKNSAEKWPKRLNLKKEKQ--KRLESLDGEVRESEKELVLMKEQKASI 191
                     +  ++    +   +  LKK K   + +E         E +++ ++ +    
Sbjct: 881  VHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940

Query: 192  RAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTV 251
                ++  EK+  +E +Y     KL S+   L +++   K+   ++   ++ +  L+   
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK-- 998

Query: 252  RLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKE 311
                 EL   + E +  E    + +   E+   EL   + Q   +    E+ ++    + 
Sbjct: 999  -----ELHQTQTEKKTIEEWADKYKHETEQLVSEL---KEQNTLLKTEKEELNRRIHDQA 1050

Query: 312  KELISVGKSIRQFEERVREFELRE 335
            KE+    +     E +  E +L +
Sbjct: 1051 KEITETMEKKLVEETKQLELDLND 1074

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 36/236 (15%), Positives = 84/236 (35%), Gaps = 15/236 (6%)

Query: 124  FVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVL 183
             +R  +     ++  +E +  +++     W  R++  +  +  +        +     ++
Sbjct: 848  LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY------LQCCYRRMM 901

Query: 184  MKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDN 243
             K +   ++    +  E+ + +    +    +L+ +  E        K LL K+   E  
Sbjct: 902  AKRELKKLKIEARSV-ERYKKLHIGLENKIMQLQRKIDEQNKE---YKSLLEKMNNLEIT 957

Query: 244  LQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDC 303
              +    +R     L   E+E +        +QE I +  +EL   + + K++    +  
Sbjct: 958  YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKY 1017

Query: 304  SKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVEDSSKNLELRQKKL 359
              E +    EL      ++  +E     EL  R  D  ++  E   K L    K+L
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKE-----ELNRRIHDQAKEITETMEKKLVEETKQL 1068

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 22/214 (10%), Positives = 69/214 (32%), Gaps = 3/214 (1%)

Query: 152  KWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQ-KASIRAMIEACTEKLEAIEESYD 210
             + +R       QK        VR+  + +       +A +R  +     ++   E    
Sbjct: 811  TFLRRTRAAIIIQKFQRMY--VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI 868

Query: 211  AVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKER 270
             ++  +      +   +T    + ++        +     +++    +E  +K     E 
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928

Query: 271  EFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVRE 330
            +  ++Q +I+E ++E      ++ ++       +++ +   + L    +  +    RV  
Sbjct: 929  KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988

Query: 331  FELREREFDSLRKAVEDSSKNLELRQKKLSDILQ 364
             +    +        +   K +E    K     +
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 24/207 (11%), Positives = 77/207 (37%), Gaps = 10/207 (4%)

Query: 162  EKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKR 221
              +KR + +       +  L     +      + E  +  ++     + A      + K 
Sbjct: 830  VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889

Query: 222  ELELTQTFMKDLLV-----KLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ 276
             + L Q   + ++      KL++   +++  +      EN++   +++++ + +E+  + 
Sbjct: 890  IVYL-QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948

Query: 277  ERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELR-- 334
            E++         +  +L+S +  +    +E +     ++S+ + I +  + + + +    
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 335  --EREFDSLRKAVEDSSKNLELRQKKL 359
              E   D  +   E     L+ +   L
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLL 1035

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 48/278 (17%), Positives = 104/278 (37%), Gaps = 10/278 (3%)

Query: 87  LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146
           +     + EN        E   K         E EL  ++K++     EL    + L   
Sbjct: 8   MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67

Query: 147 KNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIE 206
           +   E            +K+    + +V    + + L +E+    +  +    +KLE  E
Sbjct: 68  QEKLE----------LAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117

Query: 207 ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE 266
           ++ D  +  ++  +   +  +  M+   ++L+  +   +           +L   E +LE
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177

Query: 267 LKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE 326
             E      + +  E  +E+    N LKS+ A  E  S+++   E+E+  +   +++ E 
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237

Query: 327 RVREFELREREFDSLRKAVEDSSKNLELRQKKLSDILQ 364
           R    E    + +     +ED     +L+ K +S+ L 
Sbjct: 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELD 275

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 27/216 (12%), Positives = 90/216 (41%), Gaps = 3/216 (1%)

Query: 87  LDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLV 146
           L+   K+  + E+++  + ++I+    EL   ++ L    +++          E  + ++
Sbjct: 71  LELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130

Query: 147 KNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIE 206
           ++ A+K  +++   + ++ +L+       +++++   +  +   I + +E   E+ E  E
Sbjct: 131 ESRAQKDEEKM---EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 207 ESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELE 266
                ++ ++++    L+  +   +    K   YE+ ++ L   ++  E   E  E+ + 
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247

Query: 267 LKEREFCRIQERIEESSQELLLKENQLKSVLACIED 302
             E+    +++ +     +      +L   L  +  
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 27/253 (10%), Positives = 87/253 (34%), Gaps = 9/253 (3%)

Query: 119 EKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWPKRLNLKKEKQ---KRLESLDGEVR 175
           ++ +  + + +      L      L+  + +      +   + ++    +  + L  E  
Sbjct: 440 DQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGT 499

Query: 176 ESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLV 235
                L    +    ++   ++  + +  + +    + A + S      +      +++ 
Sbjct: 500 NFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQG---SEVVN 556

Query: 236 KLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKS 295
            L+    NL  ++      EN+L+    ++  K          I E +  +   +     
Sbjct: 557 VLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGG 616

Query: 296 VLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAVE---DSSKNL 352
           +   +++  K+ +   K +    +   + ++   E  LRE    +L  A +   +   NL
Sbjct: 617 LTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANL 676

Query: 353 ELRQKKLSDILQL 365
           +   K  +++ ++
Sbjct: 677 KEGTKFYNELTEI 689

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 81  DMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKE 140
           +  +        EI++  S L   E++  +       ++K++  + ++      +L++  
Sbjct: 843 EPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWA 902

Query: 141 DELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELV--LMKEQKASIRAMIEAC 198
              ++   S E     +   + K K LE+ DGE +  E +    L+              
Sbjct: 903 TTKSVYLGSNETG-DSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV 961

Query: 199 TEKLEAIEESYDAVKAKLESEKRELE 224
            E  E  +  +      ++S     +
Sbjct: 962 PELTERKDTFFAQQWTGVKSSAETYK 987

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 21/169 (12%), Positives = 69/169 (40%), Gaps = 5/169 (2%)

Query: 78  IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQ 137
           +  +  ++ L     EI + + E+  +E  I++   +L     +     K I     E  
Sbjct: 1   LGSNTHLKQL----IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKL 56

Query: 138 SKEDELNLVKNSAEKWPKRLNLKKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEA 197
           + + +++  + + +    ++   ++K   ++S   E+R    E  + KE+       IE 
Sbjct: 57  ALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER-ELRSLNIEEDIAKERSNQANREIEN 115

Query: 198 CTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS 246
              +++   E  + +K ++   ++     ++ +++ +  ++  +  +  
Sbjct: 116 LQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	645
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.39
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.1
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.28
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.13
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.34
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.33
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	97.17
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.0
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.77
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.59
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.56
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.37
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.81
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.8
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	95.51
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.37
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	95.15
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.94
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.49
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	94.12
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	93.93
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	93.76
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	93.61
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.85
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.89
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.48
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.46
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	89.32
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.05
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	89.04
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	88.51
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.02
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	87.74
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.93
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	86.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.44
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	86.36
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	85.92
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	84.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.12
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.37
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	82.71
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	81.99
2xzr_A	114	Immunoglobulin-binding protein EIBD; cell adhesion	81.56

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.39  E-value=1.6e-08  Score=101.28  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=27.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206           78 IDVDMKIRLLDERAKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN  148 (645)
Q Consensus        78 ~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~  148 (645)
                      .++..+...++++...+..+...+...+..+..+...+......+..+...+......+..+...+..++.
T Consensus        13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (284)
T 1c1g_A           13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA   83 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.16  E-value=2.8e-11  Score=147.93  Aligned_cols=20  Identities=0%  Similarity=0.106  Sum_probs=0.0

Q ss_pred             HHHhhHHHHHHHHHHhhhhH
Q 039206          316 SVGKSIRQFEERVREFELRE  335 (645)
Q Consensus       316 ~v~~~i~~le~~~~eLE~~n  335 (645)
                      .+...+..+...+++++++|
T Consensus      1148 ~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S         1148 DLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHHhhHH
Confidence            34444444444444444444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.10  E-value=8.9e-11  Score=143.46  Aligned_cols=14  Identities=14%  Similarity=0.128  Sum_probs=5.2

Q ss_pred             hhcchHhhhhhHHH
Q 039206           43 SFDLPHEQLGLFTA   56 (645)
Q Consensus        43 ~~~~~~~~~~~~~~   56 (645)
                      ++..+..++..+..
T Consensus       858 El~~L~~eL~el~~  871 (1184)
T 1i84_S          858 EMQAKDEELQRTKE  871 (1184)
T ss_dssp             HCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.28  E-value=0.00012  Score=74.65  Aligned_cols=171  Identities=13%  Similarity=0.126  Sum_probs=99.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          167 LESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQS  246 (645)
Q Consensus       167 ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~  246 (645)
                      +..+..+|.++...+..++.+++.+..++..+...+......+..+..++...+.++...+.++......+...+     
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-----   87 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-----   87 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----
Confidence            455556666666666666666666666666666666666666666666666666666666666666666554432     


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHH
Q 039206          247 LQSTVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEE  326 (645)
Q Consensus       247 l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~  326 (645)
                      ..+++..+.++++....++..++.++..+...++.....+......+...+..+.....+++.   .+.++...+..+..
T Consensus        88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~---~~~e~~~e~~~l~~  164 (256)
T 3na7_A           88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN---EVKNIKETQQIIFK  164 (256)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            233455555556666666666666666666666666666666666665555555444444443   23344444455555


Q ss_pred             HHHHhhhhH-----HhhHHHHHHH
Q 039206          327 RVREFELRE-----REFDSLRKAV  345 (645)
Q Consensus       327 ~~~eLE~~n-----~e~~~~~~~~  345 (645)
                      +...+.+.-     ..|+.+..+.
T Consensus       165 ~r~~l~~~i~~~lL~~Yerir~~~  188 (256)
T 3na7_A          165 KKEDLVEKTEPKIYSFYERIRRWA  188 (256)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC
Confidence            554444332     6666665543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.13  E-value=0.00048  Score=70.07  Aligned_cols=7  Identities=0%  Similarity=-0.126  Sum_probs=2.6

Q ss_pred             CCchhhH
Q 039206          409 ADPALLV  415 (645)
Q Consensus       409 ~dPa~LV  415 (645)
                      |+=++++
T Consensus       226 p~CgRIL  232 (256)
T 3na7_A          226 PYCGRIL  232 (256)
T ss_dssp             TTTCCEE
T ss_pred             CCCCeeE
Confidence            3333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.34  E-value=0.087  Score=69.70  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206           91 AKEIENKESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK  152 (645)
Q Consensus        91 ~~~~e~~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~  152 (645)
                      ..-...+..++......+..--..+.+.....+.++.++...+.+++.+.++-+.+-.+|..
T Consensus      1905 ~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A         1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444555555555555555555555555555555554444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.33  E-value=0.11  Score=48.64  Aligned_cols=124  Identities=16%  Similarity=0.259  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          170 LDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQS  249 (645)
Q Consensus       170 i~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~e  249 (645)
                      +.+++.+.+.+.+..+..+.++..++....+.+..+...-......-+..+.++..+..++++.+............+..
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk  105 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK  105 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666666666666666666666666666555544444444555555555555555555555555555555555


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          250 TVRLRENELECKEKELELKEREFCRIQERIEESSQELLLKENQL  293 (645)
Q Consensus       250 el~~~~~ele~~~~ele~le~E~~~l~~~le~~~~ei~e~e~el  293 (645)
                      ++..+..++...+.....+..+++.....+..+...+-.++.++
T Consensus       106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~  149 (155)
T 2efr_A          106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV  149 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            54444444444444444444444444333333334444444433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=97.17  E-value=0.16  Score=47.49  Aligned_cols=79  Identities=13%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          162 EKQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY  240 (645)
Q Consensus       162 el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l  240 (645)
                      ....+|..+...+...+.+.+.+++.+..++..|+.++.++...+..+..+..+++.--.++..+......+.+++..+
T Consensus        74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~  152 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL  152 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence            3556666677777777777777777777777777777777777777666666666655555555555555555554443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.00  E-value=0.24  Score=65.64  Aligned_cols=67  Identities=7%  Similarity=0.029  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          217 ESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERIEESS  283 (645)
Q Consensus       217 ee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~le~~~  283 (645)
                      ...+.++.+++.++..+..+++.+..+.+.++.+++.++..++...+=++.+..|..+....+..+.
T Consensus      2031 ~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A         2031 DEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence            3333333444444444444444444444444444444444444444444444444444444443333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.77  E-value=0.31  Score=45.89  Aligned_cols=71  Identities=10%  Similarity=0.052  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          180 ELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST  250 (645)
Q Consensus       180 ~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee  250 (645)
                      +|..++++++++.+.+..-.+.-..+++...++...+...+..+.+++.+...+...-..++.++..++..
T Consensus         7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~   77 (168)
T 3o0z_A            7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI   77 (168)
T ss_dssp             ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555554444444444444444444444444444444444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.59  E-value=0.47  Score=45.67  Aligned_cols=11  Identities=0%  Similarity=-0.028  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 039206          105 EKKIKDCNFEL  115 (645)
Q Consensus       105 e~~lee~~~e~  115 (645)
                      +.++.++...=
T Consensus        30 e~El~EFqesS   40 (189)
T 2v71_A           30 RDELVEFQEGS   40 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.56  E-value=0.57  Score=45.05  Aligned_cols=37  Identities=11%  Similarity=0.084  Sum_probs=17.2

Q ss_pred             chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206           76 SSIDVDMKIRLLDERAKEIENKESELVLVEKKIKDCN  112 (645)
Q Consensus        76 ~~~~v~~~~~~~ee~~~~~e~~~~eie~~e~~lee~~  112 (645)
                      ...+|.-+.....+....+..++.++.+-...=.+++
T Consensus         8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE   44 (189)
T 2v71_A            8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE   44 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555455555555555544444443333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.37  E-value=0.68  Score=43.57  Aligned_cols=65  Identities=8%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 039206          191 IRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRE  255 (645)
Q Consensus       191 l~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~  255 (645)
                      ++..++++...+..-.+...-+++...+....+........++...+..++..+..+.+++..++
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ   75 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ   75 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555554444444444444444444444444444444444444444444444433333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.81  E-value=0.28  Score=59.36  Aligned_cols=57  Identities=11%  Similarity=0.253  Sum_probs=24.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 039206          164 QKRLESLDGEVRESEKELVLMKEQKA----SIRAMIEACTEKLEAIEESYDAVKAKLESEK  220 (645)
Q Consensus       164 ~~~ieei~~eI~~~e~~ie~~ekeie----el~~eIE~~e~ei~e~~e~ie~le~eIee~e  220 (645)
                      +.++++++.++.++.+....++..++    ++++.+..++.++..++.+.++++..+...+
T Consensus       990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A          990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433333322    3334444444444444444444444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.80  E-value=0.42  Score=57.77  Aligned_cols=28  Identities=11%  Similarity=0.214  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039206          227 QTFMKDLLVKLRLYEDNLQSLQSTVRLR  254 (645)
Q Consensus       227 ~~~i~ele~El~~lr~e~e~l~eel~~~  254 (645)
                      +.++..+.++...++.+++++...+...
T Consensus      1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A         1022 EQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555555433333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.37  E-value=0.71  Score=39.95  Aligned_cols=53  Identities=13%  Similarity=0.134  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          220 KRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI  279 (645)
Q Consensus       220 e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l  279 (645)
                      +.++.+++.++..++.++..+...+......       ++...+.....+.++..+..++
T Consensus        43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k-------Lee~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDS-------LLFAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444433333333       4444444444444444443333

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=95.15  E-value=1.7  Score=38.90  Aligned_cols=58  Identities=21%  Similarity=0.251  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhhhchhhhHHHHhHHHHHhhHHHHHHHHHHhhhhHHhhHHHHHHH
Q 039206          278 RIEESSQELLLKENQLKSVLACIEDCSKEDQVKEKELISVGKSIRQFEERVREFELREREFDSLRKAV  345 (645)
Q Consensus       278 ~le~~~~ei~e~e~el~~~~~~i~~~~~e~~~ke~el~~v~~~i~~le~~~~eLE~~n~e~~~~~~~~  345 (645)
                      .++.+.+.+.++.+=+.++-..|.-+.++++...          =++.+-|..||.-.-+-+.+++++
T Consensus        99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEk----------lK~~E~MdSFE~LkvENE~vkerl  156 (167)
T 4gkw_A           99 KLGELEADLKEKDSMVESLTETIGILRKELENEK----------LKAAENMDSFEKLSMENENLKEKI  156 (167)
T ss_dssp             HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhhHhHHHHH
Confidence            3444445555555555555444444444444322          234444666665444444444444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.94  E-value=0.93  Score=39.13  Aligned_cols=47  Identities=30%  Similarity=0.372  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          233 LLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQERI  279 (645)
Q Consensus       233 le~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~~~l  279 (645)
                      +...+..++++++.....+..+...++...+.....+.++..|..++
T Consensus        49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri   95 (101)
T 3u59_A           49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444444444444444444444444444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.49  E-value=1.7  Score=37.41  Aligned_cols=55  Identities=16%  Similarity=0.147  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 039206          220 KRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCR  274 (645)
Q Consensus       220 e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~  274 (645)
                      ..++..++.++..++.++..+...+......+....+.......++..+.+.+.-
T Consensus        43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444455555555555555543

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=94.12  E-value=3.1  Score=37.26  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHH
Q 039206           97 KESELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKED  141 (645)
Q Consensus        97 ~~~eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~  141 (645)
                      ++..|.+++.+++.+..+.++...+++-+-+-+.+-.+++..+.+
T Consensus         9 K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqK   53 (167)
T 4gkw_A            9 KEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQK   53 (167)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            334455555555555555555555555555555555444444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=93.93  E-value=0.84  Score=38.34  Aligned_cols=63  Identities=10%  Similarity=0.151  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST  250 (645)
Q Consensus       188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee  250 (645)
                      |.+++.+|+.+......+..+++++...++..+..++.-...-..++++|..++..++..--.
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~   64 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLA   64 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            456777778888888888888888888888888887777777777788888887777766655

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=93.76  E-value=1.3  Score=41.02  Aligned_cols=43  Identities=16%  Similarity=0.211  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          208 SYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQST  250 (645)
Q Consensus       208 ~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~ee  250 (645)
                      ++..++.++.+.+...+.-..++.++..++..+...++.....
T Consensus        53 r~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR   95 (147)
T 2b9c_A           53 KMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER   95 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333434444444444444444444444444444444443333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.61  E-value=4.6  Score=37.51  Aligned_cols=45  Identities=20%  Similarity=0.233  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhh
Q 039206          108 IKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEK  152 (645)
Q Consensus       108 lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~  152 (645)
                      +..+..+...+..++..+...+.+-.......+.....++.++++
T Consensus        46 ~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEe   90 (154)
T 2ocy_A           46 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED   90 (154)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555554444444444444444444444

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=92.85  E-value=2.3  Score=39.24  Aligned_cols=16  Identities=19%  Similarity=0.237  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 039206          235 VKLRLYEDNLQSLQST  250 (645)
Q Consensus       235 ~El~~lr~e~e~l~ee  250 (645)
                      ..+..+..++...+..
T Consensus        52 Er~~~lE~qLkeak~~   67 (147)
T 2b9c_A           52 EKMEIQEIQLKEAKHI   67 (147)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.89  E-value=4.1  Score=36.59  Aligned_cols=25  Identities=8%  Similarity=0.294  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHH
Q 039206          188 KASIRAMIEACTEKLEAIEESYDAV  212 (645)
Q Consensus       188 ieel~~eIE~~e~ei~e~~e~ie~l  212 (645)
                      |.+++..|..+..++..++....++
T Consensus        38 i~elrr~iq~L~~el~~l~~~~~~L   62 (129)
T 3tnu_B           38 ISEMNRMIQRLRAEIDNVKKQCANL   62 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3333333333333333333333333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.48  E-value=3.3  Score=37.34  Aligned_cols=11  Identities=9%  Similarity=0.163  Sum_probs=3.9

Q ss_pred             HHHHHHHHHHH
Q 039206          193 AMIEACTEKLE  203 (645)
Q Consensus       193 ~eIE~~e~ei~  203 (645)
                      ..|..+..++.
T Consensus        45 r~iq~L~~el~   55 (131)
T 3tnu_A           45 RTMQNLEIELQ   55 (131)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.46  E-value=2.8  Score=38.28  Aligned_cols=9  Identities=11%  Similarity=0.010  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 039206           59 IQELFDLTM   67 (645)
Q Consensus        59 ~e~~~~~~r   67 (645)
                      +-+.++.++
T Consensus        66 iadEl~k~~   74 (138)
T 3hnw_A           66 IADDYFKAK   74 (138)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=89.32  E-value=5.6  Score=34.40  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHH
Q 039206          114 ELACKEKELGFVRKRIGVCNSELQSKEDELNLVKN  148 (645)
Q Consensus       114 e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~  148 (645)
                      .+..+..++..++..+.....++..+++.+..++.
T Consensus        11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~   45 (112)
T 1l8d_A           11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK   45 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33444444444444555555555555555555543

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.05  E-value=6.6  Score=34.21  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206          188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRE  222 (645)
Q Consensus       188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~E  222 (645)
                      ++.+...+..+++.+......|+.++.++..++..
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~   60 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV   60 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555554443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=89.04  E-value=3.7  Score=35.75  Aligned_cols=79  Identities=11%  Similarity=0.162  Sum_probs=44.2

Q ss_pred             HHHHHhhhhhcCCchHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhH
Q 039206           63 FDLTMKSLEKQSSSSIDVDMKIRLLDERAKEIENKES---ELVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSK  139 (645)
Q Consensus        63 ~~~~r~~~~~~~~~~~~v~~~~~~~ee~~~~~e~~~~---eie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~l  139 (645)
                      ++.+..+..   .+.+.+..+..+++++..++.....   .|.-++...+-+..++..-+...+++.++++++...+..+
T Consensus        26 i~~L~~~L~---~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L  102 (110)
T 2v4h_A           26 LEDLRQQLQ---QAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL  102 (110)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence            444444444   4455555555566666555555555   4445555666666666666666666666665555555555


Q ss_pred             HHHHH
Q 039206          140 EDELN  144 (645)
Q Consensus       140 e~eL~  144 (645)
                      ..++.
T Consensus       103 q~q~~  107 (110)
T 2v4h_A          103 QREFN  107 (110)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            44443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.02  E-value=9.7  Score=31.46  Aligned_cols=10  Identities=10%  Similarity=0.056  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q 039206          258 LECKEKELEL  267 (645)
Q Consensus       258 le~~~~ele~  267 (645)
                      ......++..
T Consensus        64 ~~~wq~Rl~~   73 (81)
T 2jee_A           64 QNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=87.74  E-value=5.3  Score=33.41  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          163 KQKRLESLDGEVRESEKELVLMKEQKASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYED  242 (645)
Q Consensus       163 l~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~  242 (645)
                      |.++|+.+..+-.++.-.+       +.++..++....+...-...+.+.+.++-..++.+....-.-.+++.++..+++
T Consensus         5 Lr~qi~~l~~e~~~l~~e~-------dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e   77 (86)
T 3swk_A            5 LRRQVDQLTNDKARVEVER-------DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE   77 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555444444444       444555666666666666666667777777777666666666666666666666


Q ss_pred             HHHH
Q 039206          243 NLQS  246 (645)
Q Consensus       243 e~e~  246 (645)
                      ++.=
T Consensus        78 El~f   81 (86)
T 3swk_A           78 EIAF   81 (86)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.93  E-value=7.8  Score=34.82  Aligned_cols=16  Identities=6%  Similarity=0.368  Sum_probs=5.3

Q ss_pred             HHHHHHhHHHHHHHHH
Q 039206          202 LEAIEESYDAVKAKLE  217 (645)
Q Consensus       202 i~e~~e~ie~le~eIe  217 (645)
                      +.+.+..+..+..+|+
T Consensus        40 i~elrr~iq~L~~el~   55 (131)
T 3tnu_A           40 ISELRRTMQNLEIELQ   55 (131)
T ss_dssp             -CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.56  E-value=14  Score=31.60  Aligned_cols=54  Identities=17%  Similarity=0.196  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206          101 LVLVEKKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP  154 (645)
Q Consensus       101 ie~~e~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~  154 (645)
                      ++.++..|..++.+...++.++..+...+.+-.......+.....++.++++..
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT   60 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555556666655555555555555555555555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.44  E-value=24  Score=38.09  Aligned_cols=14  Identities=14%  Similarity=0.138  Sum_probs=5.2

Q ss_pred             hHHHHHHHHHHhhh
Q 039206          138 SKEDELNLVKNSAE  151 (645)
Q Consensus       138 ~le~eL~~le~ei~  151 (645)
                      +...++......++
T Consensus       385 ~~~~~~~~~~~~~e  398 (487)
T 3oja_A          385 ELDGTLQQAVGQIE  398 (487)
T ss_dssp             HHHHHHHHHTTSSC
T ss_pred             hhhhhHHHhhchhh
Confidence            33333333333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.36  E-value=3.3  Score=37.54  Aligned_cols=49  Identities=18%  Similarity=0.222  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHhhHHHHHHHHHHhhhhch
Q 039206          106 KKIKDCNFELACKEKELGFVRKRIGVCNSELQSKEDELNLVKNSAEKWP  154 (645)
Q Consensus       106 ~~lee~~~e~~~~~~el~~l~~~i~e~~~el~~le~eL~~le~ei~~~~  154 (645)
                      ..+..+...+..+..++..+...+.+-.......+.+...++.++++..
T Consensus        32 ~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT   80 (135)
T 2e7s_A           32 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT   80 (135)
T ss_dssp             HHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555566666666555555555555555555555555433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=85.92  E-value=11  Score=41.32  Aligned_cols=16  Identities=6%  Similarity=0.063  Sum_probs=0.0

Q ss_pred             hCChhHHHHHHHHhhh
Q 039206          377 TSSGRNLQILLNQHLR  392 (645)
Q Consensus       377 ~md~~~L~~~i~~~~k  392 (645)
                      .|..+.|-.+|-.+||
T Consensus       204 ~lKmrP~kD~Vp~~fK  219 (562)
T 3ghg_A          204 LIKMKPVPDLVPGNFK  219 (562)
T ss_dssp             ----------------
T ss_pred             hcccccccccCchhhh
Confidence            3444444444444444

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=84.88  E-value=17  Score=30.78  Aligned_cols=52  Identities=6%  Similarity=0.116  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          189 ASIRAMIEACTEKLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLY  240 (645)
Q Consensus       189 eel~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~l  240 (645)
                      +.....+.....+++.+..+|.+.-.++.......+.+-.+..-++.+++.+
T Consensus        51 aanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~  102 (114)
T 2xzr_A           51 AANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARI  102 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3333344444444444444444444444444444444444444444444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.12  E-value=23  Score=38.23  Aligned_cols=35  Identities=11%  Similarity=0.053  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039206          192 RAMIEACTEKLEAIEESYDAVKAKLESEKRELELT  226 (645)
Q Consensus       192 ~~eIE~~e~ei~e~~e~ie~le~eIee~e~ELeel  226 (645)
                      +.+++.+.++.+..+..+.++...|.+....+...
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (487)
T 3oja_A          441 QHKETQLAEENARLKKLNGEADLALASANATLQEL  475 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence            33444444444444444444444444444444333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.37  E-value=28  Score=32.18  Aligned_cols=14  Identities=0%  Similarity=0.233  Sum_probs=5.8

Q ss_pred             hhHHHHHHHHHHhh
Q 039206          319 KSIRQFEERVREFE  332 (645)
Q Consensus       319 ~~i~~le~~~~eLE  332 (645)
                      ..+..++.++.+|.
T Consensus       129 ~~l~~lq~ql~~LK  142 (154)
T 2ocy_A          129 TLLDTLTLQLKNLK  142 (154)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=82.71  E-value=24  Score=30.87  Aligned_cols=23  Identities=30%  Similarity=0.122  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 039206          265 LELKEREFCRIQERIEESSQELL  287 (645)
Q Consensus       265 le~le~E~~~l~~~le~~~~ei~  287 (645)
                      +..++..++...++..=+..++.
T Consensus        79 LeD~E~k~n~aiErnalLE~El~  101 (111)
T 2v66_B           79 LEDFEQRLNQAIERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555544444443444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=81.99  E-value=10  Score=32.18  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 039206          188 KASIRAMIEACTEKLEAIEESYDAVKAKLESEKRE  222 (645)
Q Consensus       188 ieel~~eIE~~e~ei~e~~e~ie~le~eIee~e~E  222 (645)
                      ++.+...+..+++.+......|+.++..+...+..
T Consensus         4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~   38 (94)
T 3jsv_C            4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV   38 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34555556666666666666666665555555533

>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}

Probab=81.56  E-value=23  Score=29.93  Aligned_cols=76  Identities=13%  Similarity=0.196  Sum_probs=40.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039206          201 KLEAIEESYDAVKAKLESEKRELELTQTFMKDLLVKLRLYEDNLQSLQSTVRLRENELECKEKELELKEREFCRIQ  276 (645)
Q Consensus       201 ei~e~~e~ie~le~eIee~e~ELeel~~~i~ele~El~~lr~e~e~l~eel~~~~~ele~~~~ele~le~E~~~l~  276 (645)
                      .+.....++......|+.--..+......+.+-+..+...+.++.+.-++..++....+++-....-++.++.++.
T Consensus        28 aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k  103 (114)
T 2xzr_A           28 LIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK  103 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3333444444444444444444454555555555666666666666666655555555555555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	645
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	87.29

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.29  E-value=3  Score=34.03  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039206          160 KKEKQKRLESLDGEVRESEKELVLMKEQKASIRAMIE  196 (645)
Q Consensus       160 k~el~~~ieei~~eI~~~e~~ie~~ekeieel~~eIE  196 (645)
                      .|.|..+++.++++|+++++.+..+++++++++..+.
T Consensus        67 ~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~  103 (107)
T d1fxka_          67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667777777777777777776666666555555443