Citrus Sinensis ID: 039225

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
LNLSFFLIFLDSHNFSCDCSLTEMVMEIDSSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALPPSPSSSPPSGNYSFKFGKFIRERSNNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKVRFVL
Secondary Structure (PSIPRED)
cccEEEEEEEcccccccccccccEEEEccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHccccccEEEEccEEEEcHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEcccccHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccccccEEEEEEccccccccccEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccEEEEEEcccccccHHHcccEEEEEEccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccEEEEcccEcccHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHEEEEEccccHHHHHHHHHHHccccHHcccccc
Coil and Loop (DISEMBL)
LNLSFFLIFLdshnfscdcslTEMVMEIdssnpngedgvnkinghdhdsdrrhmaiiephselpkpeapaglfalppspsssppsgnysfkfGKFIRERSNNFSAAIVKKLNSLDdaraeaepepaastvikpdevtqfnISGLKVVVKLKshgeegeeKIKGRIsffsrsncrdcTAVRRFFKQRGLKFVeinvdvfpprekelirrtgssqvpqvflndkLFGGLVALnslrnsgtfDERFREMLGrkcsgdapapplygfddddeeEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHhfkcdrmkvrfvl
Flexible Loop (DISEMBL)
LNLSFFLIFLDSHNFSCDCSLTEMVMEIDSSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALPPSPSSSPPSGNYSFKFGKFIRERSNNFSAAIVKKLNSLDDARAEAEpepaastvikpdevtqfniSGLKVVVKLkshgeegeekikgrisffsrsncrdCTAVRRFfkqrglkfveinvdvfpprEKELirrtgssqvpqVFLNDKLFGGLVALNSLRNSGTFDERFREMLgrkcsgdapapplYGFDDDDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVlthhfkcdrmkvrfvl
Low Complexity Region (SEG)
LNLSFFLIFLDSHNFSCDCSLTEMVMEIDSSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALppspsssppsGNYSFKFGKFIRERSNNFSAAIVKKLNSLDDaraeaepepaaSTVIKPDEVTQFNISGLKVVVKLKSHgeegeeKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFddddeeeesmdemllsVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKVRFVL
Disordered region (IsUnstruct)
**LSFFLIFLDSHNFSCDCSLTEMVM***************************************************************FKFGKFIRE***NFSAAIV**************************EVTQFNISGLKVVVKLKS*******KIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERF*********************************LLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKVRF**
Disordered Region (DISOPRED)
*NLSFFLIFLDSHNFSCDCSLTEMVMEIDS***************DHDSDRRHMAI**********************************KFGKFIRERSNNF************************************************************RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFR*****************************DEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDR**VRF**
Disordered Region (DISEMBL)
LNLSFFLIFLDSHNFSCDCSLTEMVMEIDSSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALPP********GNYSFKFGKFIRERSNNFSAAIVKKLNSLD************STVIKPDEVTQFNISGLKVVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKVRFVL
Disordered Region (DISPRO)
LNLSFFLIFLDSHNFSCDCSLTEMVMEIDSSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFA************NYSFKFGKFIRERSNNFSAAIVKKLNSLD***************IKPDEVTQFNISGLKVVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LNLSFFLIFLDSHNFSCDCSLTEMVMEIDSSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALPPSPSSSPPSGNYSFKFGKFIRERSNNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKVRFVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q9HU55	84	Glutaredoxin OS=Pseudomon	yes	no	0.232	0.904	0.289	3e-05
P0AC62	83	Glutaredoxin-3 OS=Escheri	N/A	no	0.232	0.915	0.263	8e-05
P0AC63	83	Glutaredoxin-3 OS=Escheri	yes	no	0.232	0.915	0.263	8e-05
P0AC64	83	Glutaredoxin-3 OS=Escheri	N/A	no	0.232	0.915	0.263	8e-05
Q8GWS0	174	Glutaredoxin-C5, chloropl	no	no	0.293	0.551	0.285	0.0003
P0AC68	81	Glutaredoxin-like protein	no	no	0.192	0.777	0.359	0.0009
P0AC65	81	Glutaredoxin-like protein	N/A	no	0.192	0.777	0.359	0.0009
P0AC66	81	Glutaredoxin-like protein	no	no	0.192	0.777	0.359	0.0009
P0AC67	81	Glutaredoxin-like protein	N/A	no	0.192	0.777	0.359	0.0009

>sp|Q9HU55|GLRX_PSEAE Glutaredoxin OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=grx PE=3 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 41/76 (53%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  ++ + C  C   ++  +++G+ F EI  D  P    EL R+ GS+ VPQ+++ +   
Sbjct: 4   VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPELRAELARKAGSTTVPQIWIGETHV 63

Query: 225 GGLVALNSLRNSGTFD 240
           GG   L++L  +G  D
Sbjct: 64  GGCDDLHALERAGKLD 79

Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

>sp|P0AC62|GLRX3_ECOLI Glutaredoxin-3 OS=Escherichia coli (strain K12) GN=grxC PE=1 SV=2

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  +++  C  C   +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  
Sbjct: 4   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 63

Query: 225 GGLVALNSLRNSGTFD 240
           GG   L +L   G  D
Sbjct: 64  GGCDDLYALDARGGLD 79

The disulfide bond functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. In addition, it is also involved in reducing some disulfides in a coupled system with glutathione reductase.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AC63|GLRX3_ECOL6 Glutaredoxin-3 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=grxC PE=3 SV=2

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  +++  C  C   +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  
Sbjct: 4   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 63

Query: 225 GGLVALNSLRNSGTFD 240
           GG   L +L   G  D
Sbjct: 64  GGCDDLYALDARGGLD 79

The disulfide bond functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. In addition, it is also involved in reducing some disulfides in a coupled system with glutathione reductase.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0AC64|GLRX3_ECO57 Glutaredoxin-3 OS=Escherichia coli O157:H7 GN=grxC PE=3 SV=2

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  +++  C  C   +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  
Sbjct: 4   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 63

Query: 225 GGLVALNSLRNSGTFD 240
           GG   L +L   G  D
Sbjct: 64  GGCDDLYALDARGGLD 79

The disulfide bond functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. In addition, it is also involved in reducing some disulfides in a coupled system with glutathione reductase.

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q8GWS0|GRXC5_ARATH Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 154 GEEGEEKIKGRIS-----FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPR----EKE 204
           G   EE I+  ++      +S++ C  CT V+  FK+ G++ + + +D   P+    +K 
Sbjct: 66  GSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKV 125

Query: 205 LIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGR 249
           L R TG   VP VF+  K  GG      L   G  +    E  G+
Sbjct: 126 LERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANGK 170

Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P0AC68|NRDH_SHIFL Glutaredoxin-like protein NrdH OS=Shigella flexneri GN=nrdH PE=3 SV=1

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD   P   E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRV-PEAAEALRAQGFRQLPVVIAGDLS 60

Query: 224 FGGL 227
           + G 
Sbjct: 61  WSGF 64

Electron transport system for the ribonucleotide reductase system nrdEF.

Shigella flexneri (taxid: 623)

>sp|P0AC65|NRDH_ECOLI Glutaredoxin-like protein NrdH OS=Escherichia coli (strain K12) GN=nrdH PE=1 SV=1

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD   P   E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRV-PEAAEALRAQGFRQLPVVIAGDLS 60

Query: 224 FGGL 227
           + G 
Sbjct: 61  WSGF 64

Electron transport system for the ribonucleotide reductase system nrdEF.

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AC66|NRDH_ECOL6 Glutaredoxin-like protein NrdH OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nrdH PE=3 SV=1

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD   P   E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRV-PEAAEALRAQGFRQLPVVIAGDLS 60

Query: 224 FGGL 227
           + G 
Sbjct: 61  WSGF 64

Electron transport system for the ribonucleotide reductase system nrdEF.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0AC67|NRDH_ECO57 Glutaredoxin-like protein NrdH OS=Escherichia coli O157:H7 GN=nrdH PE=3 SV=1

 Score = 44.7 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD   P   E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRV-PEAAEALRAQGFRQLPVVIAGDLS 60

Query: 224 FGGL 227
           + G 
Sbjct: 61  WSGF 64

Electron transport system for the ribonucleotide reductase system nrdEF.

Escherichia coli O157:H7 (taxid: 83334)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
255555547	660	electron transporter, putative [Ricinus	0.776	0.384	0.597	1e-85
449524714	697	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.831	0.390	0.608	7e-84
449463543	666	PREDICTED: uncharacterized protein LOC10	0.831	0.408	0.608	9e-84
359473519	703	PREDICTED: uncharacterized protein LOC10	0.779	0.362	0.593	9e-83
224099673	372	hypothetical protein POPTRDRAFT_766279 [	0.819	0.720	0.597	1e-82
147777298	773	hypothetical protein VITISV_015402 [Viti	0.779	0.329	0.586	3e-82
297738278	546	unnamed protein product [Vitis vinifera]	0.666	0.399	0.632	1e-76
224111352	194	hypothetical protein POPTRDRAFT_726714 [	0.559	0.943	0.737	5e-75
356505328	629	PREDICTED: uncharacterized protein LOC10	0.868	0.451	0.5	4e-67
356522686	633	PREDICTED: uncharacterized protein LOC10	0.859	0.443	0.513	1e-66

>gi|255555547|ref|XP_002518810.1| electron transporter, putative [Ricinus communis] gi|223542191|gb|EEF43735.1| electron transporter, putative [Ricinus communis]

 Score =  322 bits (826), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/283 (59%), Positives = 207/283 (73%), Gaps = 29/283 (10%)

Query: 53  HMAIIEPHSELPKPEAPAGLFA------------LPPSPSSSPPSGNYSFKFGKFIRERS 100
           H+ II+PHS LPKPE P GLF+            LP S +   PS       GKF ++RS
Sbjct: 87  HLQIIQPHSLLPKPEVPPGLFSNQNADPFTRFKSLPDSLTVDMPS------LGKFFKDRS 140

Query: 101 NNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHGEEGEEK 160
           N+ SA+I  + +S  +     +         + ++VT+F+ISGLKV+VKLK+  E   E 
Sbjct: 141 NSLSASIANRFSSFKNNNNTNDDH-------QMNKVTEFSISGLKVIVKLKN--ERDFEF 191

Query: 161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN 220
           IKGRI+FFSRSNCRDCTAVR FF+++ LKFVEIN+DVFP REKELI+RTG+SQVPQ+F N
Sbjct: 192 IKGRITFFSRSNCRDCTAVRSFFREKRLKFVEINIDVFPLREKELIQRTGNSQVPQIFFN 251

Query: 221 DKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEMLLSV 280
           DKLFGGLVALNSLRNSG FD R +EMLG KCSGDAPAPP+YGF  DD EEE++DEM+  V
Sbjct: 252 DKLFGGLVALNSLRNSGGFDHRLKEMLGSKCSGDAPAPPVYGF--DDPEEEAIDEMVEIV 309

Query: 281 KLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKV 323
           +LLRQRLPIQDRL+K+KIVKNCF+GS+MV+VL  H  C R K 
Sbjct: 310 RLLRQRLPIQDRLMKMKIVKNCFAGSQMVEVLIQHLDCARKKA 352

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524714|ref|XP_004169366.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101218879 [Cucumis sativus]

 Score =  317 bits (811), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 174/286 (60%), Positives = 205/286 (71%), Gaps = 14/286 (4%)

Query: 45  HDHDSDRRHMAIIEPHSELPKPEAPAGLFAL----PPSPSSSPPSGNYSF---KFGKFIR 97
           H  + +   + ++EPHS+LPKPEAP G+       PP   S   S N S      GKFIR
Sbjct: 110 HQLEPNNGEVRVLEPHSQLPKPEAPPGISLSSADEPPHKRSQSLSENISVDMPSIGKFIR 169

Query: 98  ERSNNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHGEEG 157
           ERSN+ SAAI K+++SL D   + E +   S       VT+ N+SGLKVVVKLKS  EE 
Sbjct: 170 ERSNSLSAAIFKRISSLKDEYKDDEDDNEKSQT----GVTEINLSGLKVVVKLKS-DEES 224

Query: 158 EEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV 217
           + ++KGRISFFSRSNCRDC AVR FF ++GL+FVEINVDVFP REKEL++RTGS+ VPQ+
Sbjct: 225 DRELKGRISFFSRSNCRDCKAVRSFFNEKGLRFVEINVDVFPQREKELMKRTGSTLVPQI 284

Query: 218 FLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEML 277
           F NDKLFGGLVALNSLRNSG FD R ++ML  KC  DAPAPP+YGFDD D  E S DE+L
Sbjct: 285 FFNDKLFGGLVALNSLRNSGEFDRRIKDMLSHKCPDDAPAPPVYGFDDPD--EGSPDELL 342

Query: 278 LSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKV 323
             VK LRQRLPIQDRLIK+KIVKNCFSGSEMV+ L H   C R K 
Sbjct: 343 EIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIHRLDCGRRKA 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463543|ref|XP_004149493.1| PREDICTED: uncharacterized protein LOC101218879 [Cucumis sativus]

 Score =  316 bits (810), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 174/286 (60%), Positives = 205/286 (71%), Gaps = 14/286 (4%)

Query: 45  HDHDSDRRHMAIIEPHSELPKPEAPAGLFAL----PPSPSSSPPSGNYSF---KFGKFIR 97
           H  + +   + ++EPHS+LPKPEAP G+       PP   S   S N S      GKFIR
Sbjct: 79  HQLEPNNGEVRVLEPHSQLPKPEAPPGISLSSADEPPHKRSQSLSENISVDMPSIGKFIR 138

Query: 98  ERSNNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHGEEG 157
           ERSN+ SAAI K+++SL D   + E +   S       VT+ N+SGLKVVVKLKS  EE 
Sbjct: 139 ERSNSLSAAIFKRISSLKDEYKDDEDDNEKSQT----GVTEINLSGLKVVVKLKS-DEES 193

Query: 158 EEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV 217
           + ++KGRISFFSRSNCRDC AVR FF ++GL+FVEINVDVFP REKEL++RTGS+ VPQ+
Sbjct: 194 DRELKGRISFFSRSNCRDCKAVRSFFNEKGLRFVEINVDVFPQREKELMKRTGSTLVPQI 253

Query: 218 FLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEML 277
           F NDKLFGGLVALNSLRNSG FD R ++ML  KC  DAPAPP+YGFDD D  E S DE+L
Sbjct: 254 FFNDKLFGGLVALNSLRNSGEFDRRIKDMLSHKCPDDAPAPPVYGFDDPD--EGSPDELL 311

Query: 278 LSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKV 323
             VK LRQRLPIQDRLIK+KIVKNCFSGSEMV+ L H   C R K 
Sbjct: 312 EIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIHRLDCGRRKA 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473519|ref|XP_002272955.2| PREDICTED: uncharacterized protein LOC100263256 [Vitis vinifera]

 Score =  313 bits (801), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 162/273 (59%), Positives = 199/273 (72%), Gaps = 18/273 (6%)

Query: 56  IIEPHSELPKPEAPAGLFALPPSPSSSPPSGNYSFK-----FGKFIRERSNNFSAAIVKK 110
           II PHS+LPKPEAP GL   P          + S        GK+IR+RSN+ SAAIVK+
Sbjct: 136 IIPPHSQLPKPEAPPGLLNPPSMEDYYRVERSQSLTENLPAIGKYIRDRSNSLSAAIVKR 195

Query: 111 LNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHGEEGEEKIKGRISFFSR 170
           ++S        E + + S   K + VT+FN+SGLKV+VK K   E  +  +KGRISFFSR
Sbjct: 196 ISSF------KESDESKS---KWNNVTEFNLSGLKVIVKQKD--ENRDFALKGRISFFSR 244

Query: 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVAL 230
           SNCRDCTAVR FF+++GLKFVEINVDV+P REKEL+ RTG+S VPQ+F N+K FGGLVAL
Sbjct: 245 SNCRDCTAVRLFFREKGLKFVEINVDVYPSREKELMERTGTSSVPQIFFNEKFFGGLVAL 304

Query: 231 NSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEMLLSVKLLRQRLPIQ 290
           NSLRNSG FD R  EMLGRKC  DAPAPP+YGF  DD EE++ DEM+  V++LRQRLPIQ
Sbjct: 305 NSLRNSGDFDRRLTEMLGRKCPDDAPAPPVYGF--DDYEEDTTDEMIAIVRVLRQRLPIQ 362

Query: 291 DRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKV 323
           DRL+K+KIV NCF+G+EM++V+  HF C R K 
Sbjct: 363 DRLMKMKIVNNCFAGAEMLEVMIQHFDCGRKKA 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099673|ref|XP_002311573.1| hypothetical protein POPTRDRAFT_766279 [Populus trichocarpa] gi|222851393|gb|EEE88940.1| hypothetical protein POPTRDRAFT_766279 [Populus trichocarpa]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/298 (59%), Positives = 208/298 (69%), Gaps = 30/298 (10%)

Query: 41  KINGHDHDSDRRHMAIIEPHSELPKPEAPAGLF------------ALPPSPSSSPPSGNY 88
           KING+           I+P   LPKPEAP GL             A+  S S S      
Sbjct: 77  KINGYKQ--------TIQPDFHLPKPEAPPGLSPSPPSQPYENGNAVVRSKSLSESFTAV 128

Query: 89  SF-KFGKFIRERSNNFSAAIVKKLNSL--DDARAEAEPEPAASTVIKPDEVTQFNISGLK 145
                GKFI++RSN+ S  I K+ +SL  DD   +       S       VT+F ISGLK
Sbjct: 129 DMPSIGKFIKDRSNSLSETISKRFSSLKFDDGDDDYMNNKVKSF---DSGVTEFKISGLK 185

Query: 146 VVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKEL 205
           VVV LK++  E EE+IKGR+SFFSRSNCRDCTAVR FF++RGLKFVEIN+DV+  REKEL
Sbjct: 186 VVVMLKNN--EKEEQIKGRVSFFSRSNCRDCTAVRSFFRERGLKFVEINIDVYRQREKEL 243

Query: 206 IRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDD 265
           I RTGSSQVPQ+F NDKLFGGLVALNSLRNSG F+ER +EMLG+KCSGDAPAPP+YGF  
Sbjct: 244 IERTGSSQVPQIFFNDKLFGGLVALNSLRNSGGFEERLKEMLGKKCSGDAPAPPVYGF-- 301

Query: 266 DDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKV 323
           DD EEES DEM+  VK+LRQRLPIQDRL+K+KIVKNCF+G EMV+VL HHF C R K+
Sbjct: 302 DDHEEESTDEMVGIVKVLRQRLPIQDRLMKMKIVKNCFAGKEMVEVLIHHFDCGRKKL 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777298|emb|CAN66800.1| hypothetical protein VITISV_015402 [Vitis vinifera]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 160/273 (58%), Positives = 197/273 (72%), Gaps = 18/273 (6%)

Query: 56  IIEPHSELPKPEAPAGLFALPPSPSSSPPSGNYSFK-----FGKFIRERSNNFSAAIVKK 110
           II PHS+LPKPEAP GL   P          + S        GK+IR+RSN+ SAAIVK+
Sbjct: 136 IIPPHSQLPKPEAPPGLLNPPSMEDYYRVERSQSLTENLPAIGKYIRDRSNSLSAAIVKR 195

Query: 111 LNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHGEEGEEKIKGRISFFSR 170
           ++S  ++              K + VT+FN+SGLKV+VK K   E  +  +KGRISFFSR
Sbjct: 196 ISSFKESDESKS---------KWNNVTEFNLSGLKVIVKQKD--ENRDFALKGRISFFSR 244

Query: 171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVAL 230
           SNCRDCTAVR FF+++GLKFVEINVDV+P REKEL+ RTG+S VPQ+F N+K FGGLVAL
Sbjct: 245 SNCRDCTAVRLFFREKGLKFVEINVDVYPSREKELMERTGTSSVPQIFFNEKFFGGLVAL 304

Query: 231 NSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEESMDEMLLSVKLLRQRLPIQ 290
           NSLRNSG FD R  EMLGRKC  DAPAPP+YGF  DD EE++ DEM+  V++LRQRLPIQ
Sbjct: 305 NSLRNSGDFDRRLTEMLGRKCPDDAPAPPVYGF--DDYEEDTTDEMIAIVRVLRQRLPIQ 362

Query: 291 DRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKV 323
           DRL+K+KIV NCF+G+EM++V+  HF C R K 
Sbjct: 363 DRLMKMKIVNNCFAGAEMLEVMIQHFDCGRKKA 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738278|emb|CBI27479.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/231 (63%), Positives = 181/231 (78%), Gaps = 13/231 (5%)

Query: 93  GKFIRERSNNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKS 152
           GK+IR+RSN+ SAAIVK+++S        E + + S   K + VT+FN+SGLKV+VK K 
Sbjct: 21  GKYIRDRSNSLSAAIVKRISSF------KESDESKS---KWNNVTEFNLSGLKVIVKQKD 71

Query: 153 HGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSS 212
             E  +  +KGRISFFSRSNCRDCTAVR FF+++GLKFVEINVDV+P REKEL+ RTG+S
Sbjct: 72  --ENRDFALKGRISFFSRSNCRDCTAVRLFFREKGLKFVEINVDVYPSREKELMERTGTS 129

Query: 213 QVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPLYGFDDDDEEEES 272
            VPQ+F N+K FGGLVALNSLRNSG FD R  EMLGRKC  DAPAPP+YGF  DD EE++
Sbjct: 130 SVPQIFFNEKFFGGLVALNSLRNSGDFDRRLTEMLGRKCPDDAPAPPVYGF--DDYEEDT 187

Query: 273 MDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKV 323
            DEM+  V++LRQRLPIQDRL+K+KIV NCF+G+EM++V+  HF C R K 
Sbjct: 188 TDEMIAIVRVLRQRLPIQDRLMKMKIVNNCFAGAEMLEVMIQHFDCGRKKA 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111352|ref|XP_002315822.1| hypothetical protein POPTRDRAFT_726714 [Populus trichocarpa] gi|222864862|gb|EEF01993.1| hypothetical protein POPTRDRAFT_726714 [Populus trichocarpa]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 163/187 (87%), Gaps = 4/187 (2%)

Query: 136 VTQFNISGLKVVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINV 195
           VT+FNISGLKV VKLK   EE  E+IKGRISFFSRSNCRDCTAVR FF++RGLKFVEIN+
Sbjct: 12  VTRFNISGLKVTVKLKKDDEE--EQIKGRISFFSRSNCRDCTAVRSFFRERGLKFVEINI 69

Query: 196 DVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDA 255
           DV+  REKELI RTG+SQVPQ+F N+KLFGGLVALNSLRNSG F++R +EML +KCSG+A
Sbjct: 70  DVYRQREKELIERTGNSQVPQIFFNEKLFGGLVALNSLRNSGGFEQRLKEMLAKKCSGNA 129

Query: 256 PAPPLYGFDDDDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHH 315
           PAPP+YGF  DD EEES DEM+  VK+LRQ+LPIQDRL+K+KIVKNCF+G+EMV+V+ HH
Sbjct: 130 PAPPVYGF--DDHEEESTDEMVWIVKVLRQKLPIQDRLMKMKIVKNCFAGNEMVEVIIHH 187

Query: 316 FKCDRMK 322
           F C + K
Sbjct: 188 FDCGKKK 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505328|ref|XP_003521443.1| PREDICTED: uncharacterized protein LOC100813775 [Glycine max]

 Score =  261 bits (666), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/296 (50%), Positives = 200/296 (67%), Gaps = 12/296 (4%)

Query: 27  EIDSSNPNGE-DGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALPPSPSSSPPS 85
           EI ++  N + +  +   G D +SDR    ++ PHS LP P  P    +   + + +  S
Sbjct: 33  EIHANTSNNQIEITSHYGGDDAESDRHVTLVVHPHSLLPMPVPPQ---SFKSNENDAVSS 89

Query: 86  GNYSFKFGKFIRERSNNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLK 145
            + +F  G F+R+RS++ SAAIVK+++SL  +  E   +     +    EVT+F++SG+K
Sbjct: 90  NDSNFSVGSFLRQRSSHLSAAIVKRVSSLRQSMEEKTNDDEEENL----EVTEFSLSGVK 145

Query: 146 VVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKEL 205
           V V  K   EE E   KGRISFFS+SNCRDCTAVRRFFK++G+++VEINVDVF  RE+EL
Sbjct: 146 VTVTPKPE-EEKETSFKGRISFFSKSNCRDCTAVRRFFKEKGIRYVEINVDVFGEREREL 204

Query: 206 IRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREML-GRKCSGDAPAPPLYGFD 264
             RTGS  VPQ+F N+KL GGLVALNSLRNSG FD R  E++ G+   GD+PAPP+YGF 
Sbjct: 205 RERTGSGSVPQIFFNEKLIGGLVALNSLRNSGEFDRRVAEIVAGKVAGGDSPAPPVYGF- 263

Query: 265 DDDEEEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDR 320
            D  EEE  DEM+  V++LR RLPIQDRL ++K+VKNCF G+E+V+ L  +F C R
Sbjct: 264 -DYVEEERADEMVGVVRVLRLRLPIQDRLRRMKMVKNCFQGNELVEALLQNFHCAR 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522686|ref|XP_003529977.1| PREDICTED: uncharacterized protein LOC100810111 [Glycine max]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/292 (51%), Positives = 194/292 (66%), Gaps = 11/292 (3%)

Query: 30  SSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALPPSPSSSPPSGNYS 89
           ++N N  +  +   G    SDR+   ++ PHS LP P  P   F +  +   S    N+S
Sbjct: 41  TANNNDTEITSHHGGEHAQSDRQVTLVVHPHSLLPMPVPPQS-FKVSHNDVVSLNDSNFS 99

Query: 90  FKFGKFIRERSNNFSAAIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVK 149
              G F+R+RS++ SAAIVK+++SL  +  E           +  EVT+FN+SG+KV V 
Sbjct: 100 V--GSFLRQRSSDLSAAIVKRVSSLRQSMEENNDNDIDGE--ENREVTEFNLSGVKVTVT 155

Query: 150 LKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT 209
            K    E E  IKGRISFFS+SNCRDCTAVRRFFK++G+K+VEINVDVF  RE+EL  RT
Sbjct: 156 PKP---EKETSIKGRISFFSKSNCRDCTAVRRFFKEKGIKYVEINVDVFGERERELRERT 212

Query: 210 GSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREML-GRKCSGDAPAPPLYGFDDDDE 268
           GS  VPQ+F N+KL GGLVALNSLRNSG FD R  E++ G+   GDAPAPP++GF  D  
Sbjct: 213 GSGSVPQIFFNEKLIGGLVALNSLRNSGEFDRRVAEIVAGKVAGGDAPAPPVFGF--DYV 270

Query: 269 EEESMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDR 320
           EEE  DEM+   ++LR RLPIQDRL ++K+VKNCF G+E+V+ L  HF C R
Sbjct: 271 EEERADEMVGVARVLRLRLPIQDRLRRMKMVKNCFEGNELVEALLQHFHCSR 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2081516	630	AT3G11920 [Arabidopsis thalian	0.562	0.292	0.578	2.6e-61
TAIR|locus:2133524	637	AT4G08550 [Arabidopsis thalian	0.883	0.453	0.25	2.9e-21
UNIPROTKB|P0AC62	83	grxC "reduced glutaredoxin 3"	0.232	0.915	0.263	1.1e-05
UNIPROTKB|P0AC65	81	nrdH "glutaredoxin-like protei	0.189	0.765	0.365	3.9e-05
WB|WBGene00022663	119	glrx-21 [Caenorhabditis elegan	0.266	0.731	0.242	6.4e-05
UNIPROTKB|P73492	88	ssr2061 "Probable glutaredoxin	0.244	0.909	0.271	0.00011
WB|WBGene00012869	531	Y45F10A.7 [Caenorhabditis eleg	0.458	0.282	0.225	0.00024
POMBASE|SPAC15E1.09	110	grx2 "glutaredoxin Grx2" [Schi	0.269	0.8	0.274	0.00049

TAIR|locus:2081516 AT3G11920 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 111/192 (57%), Positives = 139/192 (72%)

Query:   134 DEVTQFNISGLKVVVKLKSHXXXXXXKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEI 193
             D+VT+F ISG+KV+VK+K+       +IKGRI+FFSRSNCRD TAVR F ++RG  F EI
Sbjct:   133 DDVTEFKISGVKVLVKMKNEE-----EIKGRITFFSRSNCRDSTAVRLFLRERGFDFSEI 187

Query:   194 NVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSG 253
             N+DV+  REKEL+ RTGSSQVPQ+F N+K FGGL+ALNSLRNSG FD R +E L  KC G
Sbjct:   188 NIDVYSSREKELVERTGSSQVPQIFFNEKHFGGLMALNSLRNSGEFDRRVKEFLKEKCCG 247

Query:   254 DAPAPPLYGFXXXXXXXXXXXXXXXX---VKLLRQRLPIQDRLIKLKIVKNCFSGSEMVD 310
             DAP P +YGF                   V++LRQ+LPI+DRL+K+KIVKNCFSG+EMV+
Sbjct:   248 DAPLPVMYGFDEESNNKDVVVVVDEMMRFVRVLRQKLPIKDRLMKMKIVKNCFSGAEMVE 307

Query:   311 VLTHHFKCDRMK 322
             +L  +  C R K
Sbjct:   308 ILIDYLDCGRKK 319

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2133524 AT4G08550 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 76/304 (25%), Positives = 132/304 (43%)

Query:    27 EIDSSNPNGEDGVNKINGHDHDSDRRHMAIIEPHSELPKPEAPAGLFALXXXXXXXXXXG 86
             E +  N    D +  ++  D D D    A I    E    +  +G+ +            
Sbjct:    81 EEEGDNNVSLDEIMSVDSSDDDDDSESSAEITKACEETVVDERSGI-SQESNSSTSSAWT 139

Query:    87 NYSFKFGKFIRERSNNFSAAIVKKLN---SLDDXXXXXXXXXXXSTVIKPDEVTQFN-IS 142
               +     F+R +S      ++++L+   S+D+           S   K +  + +N +S
Sbjct:   140 EKAAAIKNFVRAKSEVAVHTMIRRLSGKLSIDNAAHGTKDDEVESP--KTEGKSLWNPLS 197

Query:   143 GLKVV------VKLKSHXXXXXXKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVD 196
              LK++      V  +         +KGRI  ++R  C +C   R F  ++ L++VEIN+D
Sbjct:   198 YLKMMQNDEDLVYREEETVFEPVVMKGRIILYTRLGCEECRGCRLFLHEKRLRYVEINID 257

Query:   197 VFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAP 256
             ++P R+ EL + +G   VP VF N+KL G    L  L  SG  +E+ + ++      +AP
Sbjct:   258 IYPTRKVELEKISGGDVVPMVFFNEKLVGSYKELKVLEESGELEEKIKHLIEETPPREAP 317

Query:   257 APPLYGFXXXXXXXXXXXXXXXXVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF 316
              PP  G                 +K+  +   ++DR  K++  KNCF GSE VD L+   
Sbjct:   318 LPPFSGEDDASSKGPVDELALIVLKM--KPCVVKDRFYKMRRFKNCFLGSEAVDFLSADQ 375

Query:   317 KCDR 320
             + +R
Sbjct:   376 RLER 379

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|P0AC62 grxC "reduced glutaredoxin 3" [Escherichia coli K-12 (taxid:83333)]

 Score = 108 (43.1 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query:   165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
             +  +++  C  C   +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  
Sbjct:     4 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 63

Query:   225 GGLVALNSLRNSGTFD 240
             GG   L +L   G  D
Sbjct:    64 GGCDDLYALDARGGLD 79

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0043295 "glutathione binding" evidence=IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA;IDA

GO:0009263 "deoxyribonucleotide biosynthetic process" evidence=IEA

UNIPROTKB|P0AC65 nrdH "glutaredoxin-like protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 103 (41.3 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 23/63 (36%), Positives = 33/63 (52%)

Query:   164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
             RI+ ++R++C  C A +R  + RG  F  INVD  P    E +R  G  Q+P V   D  
Sbjct:     2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVP-EAAEALRAQGFRQLPVVIAGDLS 60

Query:   224 FGG 226
             + G
Sbjct:    61 WSG 63

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0051353 "positive regulation of oxidoreductase activity" evidence=IMP

GO:0022900 "electron transport chain" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA;IDA

GO:0009055 "electron carrier activity" evidence=IEA;IDA

WB|WBGene00022663 glrx-21 [Caenorhabditis elegans (taxid:6239)]

 Score = 101 (40.6 bits), Expect = 6.4e-05, P = 6.4e-05
 Identities = 23/95 (24%), Positives = 44/95 (46%)

Query:   162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKE--------LIRRTGSSQ 213
             K  +  +++++C  C   +  F    + + E+N+D     + +        L+  T  + 
Sbjct:    19 KDPVVMYTKTSCTFCNRAKDLFSDVRVAYKEVNLDTLKASQPDDYLGIVNGLVYTTRQTS 78

Query:   214 VPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLG 248
             VPQ+F+  +  GG   L++LRNSG   E   +  G
Sbjct:    79 VPQIFVCGRFIGGYTELDALRNSGHLFEAIAQCTG 113

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|P73492 ssr2061 "Probable glutaredoxin ssr2061" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
 Identities = 22/81 (27%), Positives = 39/81 (48%)

Query:   161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF-PPREKELIRRTGSSQVPQVFL 219
             +  +I  ++ S C  C       K++G++F E  +D     RE    R  G   +PQ+F+
Sbjct:     3 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFI 62

Query:   220 NDKLFGGLVALNSLRNSGTFD 240
             +D+  GG   + +L  +G  D
Sbjct:    63 DDQHIGGCDDIYALDGAGKLD 83

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00012869 Y45F10A.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
 Identities = 37/164 (22%), Positives = 67/164 (40%)

Query:   163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK 222
             G++  ++      C   R    + G+ + ++++D FP   +E+  RTG+  +PQ+F N+ 
Sbjct:    17 GQVVIYTEIGNSKCAKGRDLLHREGIPYTDVSLDSFPQHSQEIFDRTGTDVLPQIFFNNI 76

Query:   223 LFGGLVALNSLRNSGTFDERFREMLGR-KCSGDAPAPP----LYGFXXXXXXXXXX---- 273
               G    L  +       E   E + R KC+   P  P      GF              
Sbjct:    77 YIGHETDLERVIGETNKWESLVEHVRREKCTNGGPIVPHPMNAIGFEEYETENNNKCCDE 136

Query:   274 -----XXXXXXVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVL 312
                        V+ ++    I++  +KLK+ +N F G E+V+ L
Sbjct:   137 VLWVPDEYSKLVRDMKNAQLIKNNRVKLKVYRNSFKGEELVEWL 180

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

POMBASE|SPAC15E1.09 grx2 "glutaredoxin Grx2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 93 (37.8 bits), Expect = 0.00049, P = 0.00048
 Identities = 25/91 (27%), Positives = 40/91 (43%)

Query:   165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPR---EKELIRRTGSSQVPQVFLND 221
             ++ FS+S C  C A +    +    +    +D        +  L  +T  S VP +F  +
Sbjct:    18 VTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRN 77

Query:   222 KLFGGLVALNSLRNSGTFDERFREMLGRKCS 252
             +  GG   LN LR+SGT  +   E+   K S
Sbjct:    78 QFIGGNSDLNKLRSSGTLTKMIAELKENKSS 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.416    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      327       284   0.00085  115 3  11 22  0.45    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  187 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.81u 0.08s 20.89t   Elapsed:  00:00:05
  Total cpu time:  20.81u 0.08s 20.89t   Elapsed:  00:00:05
  Start:  Fri May 10 15:01:08 2013   End:  Fri May 10 15:01:13 2013

GO:0004364 "glutathione transferase activity" evidence=ISS

GO:0004602 "glutathione peroxidase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IC

GO:0022900 "electron transport chain" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IGI

GO:0045454 "cell redox homeostasis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
cd03027	73	cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishe	4e-32
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	2e-16
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	1e-14
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	6e-13
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	4e-12
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	2e-10
cd02976	73	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is	3e-10
TIGR02196	74	TIGR02196, GlrX_YruB, Glutaredoxin-like protein, Y	1e-07
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	1e-07
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	2e-07
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	2e-06
pfam00610	74	pfam00610, DEP, Domain found in Dishevelled, Egl-1	2e-06
cd04371	81	cd04371, DEP, DEP domain, named after Dishevelled,	3e-06
TIGR02194	72	TIGR02194, GlrX_NrdH, Glutaredoxin-like protein Nr	3e-06
PRK10329	81	PRK10329, PRK10329, glutaredoxin-like protein; Pro	5e-06
TIGR02190	79	TIGR02190, GlrX-dom, Glutaredoxin-family domain	1e-05
cd03029	72	cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family	3e-05
smart00049	77	smart00049, DEP, Domain found in Dishevelled, Egl-	4e-05
TIGR02189	99	TIGR02189, GlrX-like_plant, Glutaredoxin-like fami	5e-04

>gnl|CDD|239325 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

 Score =  114 bits (287), Expect = 4e-32
 Identities = 42/73 (57%), Positives = 54/73 (73%)

Query: 163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK 222
           GR++ +SR  C DCTAVR F +++GL +VEIN+D+FP R+ EL  RTGSS VPQ+F N+K
Sbjct: 1   GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60

Query: 223 LFGGLVALNSLRN 235
           L GGL  L SL  
Sbjct: 61  LVGGLTDLKSLEE 73

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. Length = 73

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 72.5 bits (179), Expect = 2e-16
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           ++  FS+S C  C   +R  +  G++F EI++       +EL   +G   VPQ+F+N + 
Sbjct: 1   KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEF 60

Query: 224 FGGLVALNSL 233
            GG   L +L
Sbjct: 61  IGGYDDLKAL 70

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 67.1 bits (165), Expect = 1e-14
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           F++  C  C   +R     G+KF EI+VD  P   +EL   +G   VPQVF++ +  
Sbjct: 4   FTKPTCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSGWPTVPQVFIDGEHI 60

Length = 60

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 63.1 bits (154), Expect = 6e-13
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP--REKELIRRTGSSQVPQVFLNDK 222
           ++ +++  C  C   +R   ++G+ + EI+VD   P    + + R  G   VPQ+F+  K
Sbjct: 3   VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGK 62

Query: 223 LFGGLVALNSLRNSGTFD 240
             GG   L++L   G  D
Sbjct: 63  HVGGCDDLDALEAKGKLD 80

Length = 80

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           ++ +++  C  CT  +     +G+ F EI VD  P    E+++R+G   VPQ+F+ D   
Sbjct: 1   VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHV 60

Query: 225 GGLVALNSLRNSGTFD 240
           GG   L +L   G  D
Sbjct: 61  GGCDDLYALDREGKLD 76

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS-SQVPQVFLNDKL 223
           +  +++ NC  C   +    ++G+ + EI+VD  P   +E+I R+G    VPQ+F+ D  
Sbjct: 2   VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVH 61

Query: 224 FGG---LVAL 230
            GG   L AL
Sbjct: 62  IGGCDDLYAL 71

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|239274 cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 11/84 (13%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
            ++ +++ +C  C A +RF  +RG+ F E++VD  P   +EL +  G   VP V + D+ 
Sbjct: 1   EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEH 60

Query: 224 FGGLVALNSLRNSGTFDERFREML 247
                       SG   ++ R +L
Sbjct: 61  L-----------SGFRPDKLRALL 73

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein. Length = 73

>gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 13/63 (20%), Positives = 30/63 (47%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           ++  ++   C  C   + +   +G+ F EI+V+      +E+++  G   VP + +  K+
Sbjct: 1   KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKI 60

Query: 224 FGG 226
             G
Sbjct: 61  IVG 63

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. Length = 74

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 21/76 (27%), Positives = 41/76 (53%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  ++++ C  C   +     +G+ F EI +D    + +E+I+R+G + VPQ+F++ +  
Sbjct: 4   VEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHI 63

Query: 225 GGLVALNSLRNSGTFD 240
           GG   L +L   G  D
Sbjct: 64  GGCDDLYALDARGGLD 79

Length = 83

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 47.9 bits (115), Expect = 2e-07
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PRE--KELIRRTGSSQVPQVFLNDKLF 224
           FS+S C  C   +   K+ G+K   + +D      E    L   TG   VP VF+  K  
Sbjct: 5   FSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFI 64

Query: 225 GGLVALNSLRNSGT 238
           GG   L +L  SG 
Sbjct: 65  GGCDDLMALHKSGK 78

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 168 FSRSNCRDCTAVRRFFKQ----RGLKFVEINVDVFPPRE---KELIRRTGSSQVPQVFLN 220
           FS+S C  C   +    +       + VE+  D           L   TG   VP +F+N
Sbjct: 4   FSKSYCPYCKKAKEILAKLNVKPAYEVVEL--DQLSNGSEIQDYLEEITGQRTVPNIFIN 61

Query: 221 DKLFGGLVALNSLRNSGTFDERF 243
            K  GG   L +L  SG   E  
Sbjct: 62  GKFIGGCSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|216020 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 286 RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCD 319
            + ++DR   LK   NCF+GSE VD L  +F+  
Sbjct: 1   GVKLKDRKKHLKTYPNCFTGSEAVDWLMDNFEGL 34

The DEP domain is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit. Length = 74

>gnl|CDD|239836 cd04371, DEP, DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 275 EMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKC 318
           +++  +      +PI+DR   LK   NCF+GSE+VD L  + + 
Sbjct: 1   DLVRIMLDSDSGVPIKDRKYHLKTYPNCFTGSELVDWLLDNLEA 44

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction. Length = 81

>gnl|CDD|131249 TIGR02194, GlrX_NrdH, Glutaredoxin-like protein NrdH

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLND 221
           I+ +S++NC  C   ++  ++ G+ F EIN+D   P   + ++  G  QVP +  + 
Sbjct: 1   ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKAQGFRQVPVIVADG 56

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. Length = 72

>gnl|CDD|182381 PRK10329, PRK10329, glutaredoxin-like protein; Provisional

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD   P   E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV-PEAAETLRAQGFRQLPVVIAGDLS 60

Query: 224 FGG 226
           + G
Sbjct: 61  WSG 63

Length = 81

>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  F++  C  C   +   K++G  F EI +     R + L   TG++ VPQVF+  KL 
Sbjct: 10  VVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGN-DARGRSLRAVTGATTVPQVFIGGKLI 68

Query: 225 GGLVAL 230
           GG   L
Sbjct: 69  GGSDEL 74

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. Length = 79

>gnl|CDD|239327 cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +S F++  C  C   +   ++ G+ + EI +       + L   TG+  VPQVF++ +L 
Sbjct: 3   VSLFTKPGCPFCARAKAALQENGISYEEIPLGK-DITGRSLRAVTGAMTVPQVFIDGELI 61

Query: 225 GG 226
           GG
Sbjct: 62  GG 63

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH -> GSH reductase -> GSH -> GRX domain of hybrid -> PRX domain of hybrid -> peroxide substrate. Length = 72

>gnl|CDD|214489 smart00049, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 283 LRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKC-DRMKVR 324
               L ++DR   LK   NCF+GSE+VD L  + +  DR +  
Sbjct: 1   PETGLKLRDRKYFLKTYPNCFTGSELVDWLMDNLEIIDREEAV 43

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118). Length = 77

>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPR---EKELIRRTGSSQVPQVFLNDKLF 224
           FSRS+C  C  V+R     G+      +D  P     E  L R   S  VP VF+  KL 
Sbjct: 13  FSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLV 72

Query: 225 GGLVALNSLRNSGTFDERFRE 245
           GGL  + +L  SG+     ++
Sbjct: 73  GGLENVMALHISGSLVPMLKQ 93

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PRK10824	115	glutaredoxin-4; Provisional	99.9
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.9
PHA03050	108	glutaredoxin; Provisional	99.89
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.88
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.87
PRK10638	83	glutaredoxin 3; Provisional	99.86
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.86
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.85
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	99.85
PTZ00062	204	glutaredoxin; Provisional	99.82
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.81
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.81
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.8
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.79
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.78
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.77
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.76
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.76
PRK11200	85	grxA glutaredoxin 1; Provisional	99.74
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.73
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.73
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	99.7
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.69
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.67
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.66
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.64
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.55
PRK10329	81	glutaredoxin-like protein; Provisional	99.54
cd04447	92	DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin	99.45
cd04446	95	DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstri	99.4
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.38
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.31
cd04442	82	DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	99.29
cd04440	93	DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	99.24
cd04449	83	DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Plec	99.23
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.23
cd04448	81	DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstr	99.21
cd04439	81	DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	99.19
cd04438	84	DEP_dishevelled DEP (Dishevelled, Egl-10, and Plec	99.15
cd04443	83	DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstri	99.15
cd04441	85	DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	99.14
cd04437	125	DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin)	99.12
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.09
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.08
cd04444	109	DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin	99.06
PF00610	74	DEP: Domain found in Dishevelled, Egl-10, and Plec	98.87
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.86
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.82
smart00049	77	DEP Domain found in Dishevelled, Egl-10, and Pleck	98.78
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.78
cd04371	81	DEP DEP domain, named after Dishevelled, Egl-10, a	98.76
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.69
cd04450	88	DEP_RGS7-like DEP (Dishevelled, Egl-10, and Plecks	98.63
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.52
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.51
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.5
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.46
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.45
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.44
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.44
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.4
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.37
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.37
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.34
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.3
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.28
PHA02125	75	thioredoxin-like protein	98.26
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.26
cd04445	99	DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin	98.24
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	98.16
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	98.14
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.06
PRK12559	131	transcriptional regulator Spx; Provisional	98.05
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	98.02
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	98.0
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.98
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	97.96
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	97.92
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	97.89
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	97.87
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.85
KOG3029	370	consensus Glutathione S-transferase-related protei	97.77
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	97.75
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	97.71
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	97.7
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.68
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	97.68
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.66
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.65
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	97.62
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.62
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.6
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	97.59
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.57
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.55
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	97.53
PRK10026	141	arsenate reductase; Provisional	97.53
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	97.52
PRK10387	210	glutaredoxin 2; Provisional	97.52
COG1393	117	ArsC Arsenate reductase and related proteins, glut	97.52
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.49
PRK09381	109	trxA thioredoxin; Provisional	97.47
PHA02278	103	thioredoxin-like protein	97.44
KOG3571	626	consensus Dishevelled 3 and related proteins [Gene	97.44
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	97.41
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.4
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.4
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.39
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	97.39
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	97.38
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.38
PRK10853	118	putative reductase; Provisional	97.37
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	97.32
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	97.31
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	97.31
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.31
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.28
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	97.23
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.22
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.22
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.17
KOG4023	108	consensus Uncharacterized conserved protein [Funct	97.14
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	97.13
PRK09481	211	sspA stringent starvation protein A; Provisional	97.13
PTZ00051	98	thioredoxin; Provisional	97.1
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	97.07
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	97.06
PRK10996	139	thioredoxin 2; Provisional	97.01
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	96.91
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	96.86
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.8
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	96.8
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	96.8
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.77
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	96.77
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	96.75
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	96.74
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	96.71
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	96.71
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	96.7
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	96.69
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	96.66
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	96.66
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	96.64
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	96.64
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.63
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	96.63
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	96.58
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	96.55
PRK15113	214	glutathione S-transferase; Provisional	96.55
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	96.35
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	96.33
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	96.31
PLN02473	214	glutathione S-transferase	96.3
KOG3572	1701	consensus Uncharacterized conserved protein, conta	96.29
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	96.29
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	96.27
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	96.26
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	96.24
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	96.17
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	96.14
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	96.12
cd04436	84	DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin	96.11
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	96.07
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	96.05
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	96.03
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	96.03
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.0
PLN02378	213	glutathione S-transferase DHAR1	95.96
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	95.95
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	95.91
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	95.88
PRK13728	181	conjugal transfer protein TrbB; Provisional	95.85
KOG0406	231	consensus Glutathione S-transferase [Posttranslati	95.76
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	95.73
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	95.71
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.63
PLN02817	265	glutathione dehydrogenase (ascorbate)	95.56
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	95.51
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	95.41
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	95.37
PF13728	215	TraF: F plasmid transfer operon protein	95.2
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	95.19
PLN02395	215	glutathione S-transferase	95.07
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	94.98
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	94.93
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	94.82
PTZ00062	204	glutaredoxin; Provisional	94.68
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	94.68
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	94.46
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	94.44
PRK10357	202	putative glutathione S-transferase; Provisional	94.39
COG3019	149	Predicted metal-binding protein [General function	94.15
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	94.07
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.03
cd04435	82	DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin	94.01
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	93.97
PTZ00102	477	disulphide isomerase; Provisional	93.95
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	93.89
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	93.88
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	93.73
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	93.56
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	93.42
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	93.35
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	93.27
PRK11752	264	putative S-transferase; Provisional	93.0
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	92.85
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	92.77
PLN02309	457	5'-adenylylsulfate reductase	92.68
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	92.57
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	92.47
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	92.35
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	92.3
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	92.2
PTZ00057	205	glutathione s-transferase; Provisional	92.18
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	92.11
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	92.05
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	92.05
PTZ00102	477	disulphide isomerase; Provisional	91.89
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	91.84
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	91.41
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	90.91
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	90.84
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	90.74
COG2143	182	Thioredoxin-related protein [Posttranslational mod	90.56
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	90.47
KOG4244	281	consensus Failed axon connections (fax) protein/gl	90.34
PRK10542	201	glutathionine S-transferase; Provisional	89.65
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	89.54
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	89.28
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	89.15
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	89.12
KOG0868	217	consensus Glutathione S-transferase [Posttranslati	88.64
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	88.35
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	87.22
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	87.02
KOG1695	206	consensus Glutathione S-transferase [Posttranslati	86.73
COG5429	261	Uncharacterized secreted protein [Function unknown	86.68
KOG0867	226	consensus Glutathione S-transferase [Posttranslati	86.59
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	85.76
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	84.93
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	84.47
PHA03075	123	glutaredoxin-like protein; Provisional	83.99
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	83.98
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	82.51
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	82.39
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	82.28
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	80.17

>PRK10824 glutaredoxin-4; Provisional

Probab=99.90  E-value=1.3e-23  Score=176.66  Aligned_cols=89  Identities=16%  Similarity=0.322  Sum_probs=84.9

Q ss_pred             cCCcEEEEEcC-----CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSRS-----NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk~-----~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ..++|+||+|.     +||||++|+++|+++|++|..+||+.+++.+++|.+++|++|||||||||+||||+|++.+|++
T Consensus        13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~   92 (115)
T PRK10824         13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ   92 (115)
T ss_pred             hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence            35899999994     9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhhcc
Q 039225          236 SGTFDERFREMLGR  249 (327)
Q Consensus       236 sGeL~~~Lk~~~~~  249 (327)
                      +|+|+++|++++..
T Consensus        93 ~G~L~~lL~~~~~~  106 (115)
T PRK10824         93 RGELQQLIKETAAK  106 (115)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998763

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.90  E-value=1.1e-23  Score=171.57  Aligned_cols=88  Identities=31%  Similarity=0.462  Sum_probs=81.6

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh---HHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP---REKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG  237 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e---~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG  237 (327)
                      ..++|+||++++||||.++|++|+++|++|+++||+.+++   .++++.+++|+.|||+|||||++|||++++++|+++|
T Consensus         6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~~G   85 (99)
T TIGR02189         6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHISG   85 (99)
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHHcC
Confidence            3578999999999999999999999999999999998764   5667888899999999999999999999999999999


Q ss_pred             chHHHHHHhhc
Q 039225          238 TFDERFREMLG  248 (327)
Q Consensus       238 eL~~~Lk~~~~  248 (327)
                      +|+++|+++++
T Consensus        86 ~L~~~l~~~~~   96 (99)
T TIGR02189        86 SLVPMLKQAGA   96 (99)
T ss_pred             CHHHHHHHhCc
Confidence            99999998764

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=99.89  E-value=5.7e-23  Score=170.45  Aligned_cols=87  Identities=14%  Similarity=0.319  Sum_probs=82.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCC---ceEEEEcCC---ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGL---KFVEINVDV---FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV---~y~eiDVd~---d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      .++|+||+++|||||.+|+++|+++++   +|+++||+.   +.+.+++|.+++|+.|||+|||||++|||++++++|++
T Consensus        12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~l~~   91 (108)
T PHA03050         12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLEIDN   91 (108)
T ss_pred             cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHHHHH
Confidence            578999999999999999999999999   799999997   56789999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhhc
Q 039225          236 SGTFDERFREMLG  248 (327)
Q Consensus       236 sGeL~~~Lk~~~~  248 (327)
                      +|+|.++|++++.
T Consensus        92 ~g~L~~~l~~~~~  104 (108)
T PHA03050         92 MDALGDILSSIGV  104 (108)
T ss_pred             cCCHHHHHHHccc
Confidence            9999999999875

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.88  E-value=2.1e-22  Score=163.62  Aligned_cols=83  Identities=16%  Similarity=0.339  Sum_probs=79.4

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ..++|+||++     ++||||.+|+++|+++|++|+++||+.+++.+++|.+++|+.+||+|||||++|||++++.+|++
T Consensus        10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~   89 (97)
T TIGR00365        10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQ   89 (97)
T ss_pred             ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHH
Confidence            4589999998     89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHH
Q 039225          236 SGTFDERF  243 (327)
Q Consensus       236 sGeL~~~L  243 (327)
                      +|+|.++|
T Consensus        90 ~g~L~~~l   97 (97)
T TIGR00365        90 SGELQTLL   97 (97)
T ss_pred             CcChHHhC
Confidence            99998875

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.87  E-value=3.8e-22  Score=174.13  Aligned_cols=107  Identities=24%  Similarity=0.441  Sum_probs=94.6

Q ss_pred             cEEEEEcC------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC----CCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRS------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS----SQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~----~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +|+||+++      +||+|.+||++|++++|+|+++||+++++++++|++++|.    .+||||||||++|||++++++|
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L   80 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL   80 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            58999999      9999999999999999999999999999999999999876    8999999999999999999999


Q ss_pred             hhcCchHHHHHHhhcc----CC--CCCCCCCCCCCCCCCccchhhh
Q 039225          234 RNSGTFDERFREMLGR----KC--SGDAPAPPLYGFDDDDEEEESM  273 (327)
Q Consensus       234 ~esGeL~~~Lk~~~~~----~~--~~~ap~~P~~g~~~~~~~~~e~  273 (327)
                      +++|+|+++|+.+...    .|  +++.+++|+..++   ++....
T Consensus        81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~---Gs~k~~  123 (147)
T cd03031          81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECN---GSCKVF  123 (147)
T ss_pred             HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCC---CcceEE
Confidence            9999999999986322    22  3678888988887   555543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK10638 glutaredoxin 3; Provisional

Probab=99.86  E-value=1.7e-21  Score=152.47  Aligned_cols=83  Identities=25%  Similarity=0.614  Sum_probs=79.2

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHH
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDE  241 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~  241 (327)
                      |.+|+||++++||||.+|+.+|+++|++|+++||+.+++.++++.+++|..++|+||+||++|||++++++++++|+|.+
T Consensus         1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~~   80 (83)
T PRK10638          1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDP   80 (83)
T ss_pred             CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHHH
Confidence            34799999999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             HHH
Q 039225          242 RFR  244 (327)
Q Consensus       242 ~Lk  244 (327)
                      +|+
T Consensus        81 ~~~   83 (83)
T PRK10638         81 LLK   83 (83)
T ss_pred             HhC
Confidence            874

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.86  E-value=2.3e-21  Score=154.78  Aligned_cols=80  Identities=19%  Similarity=0.357  Sum_probs=76.5

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ..++|+||++     ++||||.+|+++|+++|++|+++||+.+++.+++|.+++|+.|+|+|||||++|||++++++|++
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~   85 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE   85 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence            3578999999     59999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchH
Q 039225          236 SGTFD  240 (327)
Q Consensus       236 sGeL~  240 (327)
                      +|+|+
T Consensus        86 ~g~L~   90 (90)
T cd03028          86 SGELQ   90 (90)
T ss_pred             cCCcC
Confidence            99984

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.85  E-value=3.6e-21  Score=148.28  Aligned_cols=79  Identities=30%  Similarity=0.653  Sum_probs=76.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERF  243 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~~L  243 (327)
                      |+||++++||+|.+|+++|+++|++|+++||+.+++.++++.+++|+.+||+|||||++|||++++.+++++|+|+.+|
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~~l   79 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDPLL   79 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhhhC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999998765

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=7.1e-21  Score=157.46  Aligned_cols=88  Identities=26%  Similarity=0.454  Sum_probs=82.2

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG  237 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG  237 (327)
                      ..++|+||+|++||||.++|.+|.++++.+..+++|.++   +++++|.+++|++|||.|||+|++|||+++++++|.+|
T Consensus        12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~~G   91 (104)
T KOG1752|consen   12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHKSG   91 (104)
T ss_pred             hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHHcC
Confidence            468999999999999999999999999998888888753   78899999999999999999999999999999999999


Q ss_pred             chHHHHHHhhc
Q 039225          238 TFDERFREMLG  248 (327)
Q Consensus       238 eL~~~Lk~~~~  248 (327)
                      +|.++|+.+++
T Consensus        92 ~L~~~l~~~~~  102 (104)
T KOG1752|consen   92 ELVPLLKEAGA  102 (104)
T ss_pred             CHHHHHHHhhc
Confidence            99999998875

>PTZ00062 glutaredoxin; Provisional

Probab=99.82  E-value=6.6e-20  Score=167.82  Aligned_cols=85  Identities=24%  Similarity=0.383  Sum_probs=81.4

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ..++|+||+|     ++||||++++++|+++|++|.++||+.+++.+++|++++|++|||||||||++|||++++++|++
T Consensus       111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~~  190 (204)
T PTZ00062        111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELYE  190 (204)
T ss_pred             hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence            3589999999     59999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHH
Q 039225          236 SGTFDERFRE  245 (327)
Q Consensus       236 sGeL~~~Lk~  245 (327)
                      +|+|+++|.+
T Consensus       191 ~G~L~~~l~~  200 (204)
T PTZ00062        191 SNSLRKVIPD  200 (204)
T ss_pred             cCChhhhhhh
Confidence            9999998875

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.81  E-value=1.4e-19  Score=137.21  Aligned_cols=74  Identities=31%  Similarity=0.703  Sum_probs=70.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCC-CccEEEeCCEEeechHHHHHhhhcC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSS-QVPQVFLNDKLFGGLVALNSLRNSG  237 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~-tVPqIFInGe~IGG~deL~~L~esG  237 (327)
                      +|+||++++||+|.+|+++|+++|++|+++||+.+++.++++.+++|.. +||+|||||++|||++++++++++|
T Consensus         1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g   75 (75)
T cd03418           1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG   75 (75)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence            4899999999999999999999999999999999988889999888987 9999999999999999999999987

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.1e-19  Score=148.73  Aligned_cols=86  Identities=17%  Similarity=0.356  Sum_probs=82.5

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcC-CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRG-LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elg-V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..++|+||+|     |.|+|+.++.++|..+| ++|..+||..|+++|+.|+++++|+|+||+||||++|||+|.+.+++
T Consensus        13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~   92 (105)
T COG0278          13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY   92 (105)
T ss_pred             hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence            4689999998     67999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hcCchHHHHHHh
Q 039225          235 NSGTFDERFREM  246 (327)
Q Consensus       235 esGeL~~~Lk~~  246 (327)
                      ++|+|+++|+++
T Consensus        93 q~GELq~~l~~~  104 (105)
T COG0278          93 QSGELQTLLKEA  104 (105)
T ss_pred             HcchHHHHHHhc
Confidence            999999999875

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.80  E-value=2.1e-19  Score=137.05  Aligned_cols=73  Identities=58%  Similarity=1.065  Sum_probs=69.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ++|+||++++||+|++|+++|+++|++|+.+||.++++.++++++++|..++|+|||||++|||++++.+|++
T Consensus         1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~   73 (73)
T cd03027           1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE   73 (73)
T ss_pred             CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence            4699999999999999999999999999999999999999999999999999999999999999999998853

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=3.5e-19  Score=140.19  Aligned_cols=76  Identities=26%  Similarity=0.610  Sum_probs=70.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCch
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTF  239 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL  239 (327)
                      .|+||++++||||.+||++|+++|+.|++++++.++  +.++.+++.+|++|||||||||++|||++++.++...|.|
T Consensus         2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l   79 (80)
T COG0695           2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL   79 (80)
T ss_pred             CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence            599999999999999999999999999999999987  6767777777999999999999999999999999888876

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.78  E-value=7.4e-19  Score=135.01  Aligned_cols=79  Identities=28%  Similarity=0.534  Sum_probs=72.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCc--eEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCch
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLK--FVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTF  239 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~--y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL  239 (327)
                      |++|+++|||+|.+++.+|++++++  |+.++|+.+   .+.++++.+.+|..++|+||+||++|||++++.+++++|+|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l   80 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL   80 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence            6899999999999999999999998  888888764   45677899999999999999999999999999999999999


Q ss_pred             HHHH
Q 039225          240 DERF  243 (327)
Q Consensus       240 ~~~L  243 (327)
                      ..+|
T Consensus        81 ~~~~   84 (84)
T TIGR02180        81 AELL   84 (84)
T ss_pred             hhhC
Confidence            8765

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.77  E-value=1.6e-18  Score=133.10  Aligned_cols=78  Identities=29%  Similarity=0.518  Sum_probs=72.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFD  240 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~  240 (327)
                      +|++|+++|||+|.+++++|++++++|+.++++.+   .+.++++++++|+.++|+||+||++|||+++++++.++|+|.
T Consensus         1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~   80 (82)
T cd03419           1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV   80 (82)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence            48999999999999999999999999998888775   446778999999999999999999999999999999999996


Q ss_pred             H
Q 039225          241 E  241 (327)
Q Consensus       241 ~  241 (327)
                      +
T Consensus        81 ~   81 (82)
T cd03419          81 K   81 (82)
T ss_pred             C
Confidence            5

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.76  E-value=3.3e-18  Score=129.94  Aligned_cols=70  Identities=27%  Similarity=0.523  Sum_probs=64.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +|+||++++||+|.+|+++|+++|++|+++||+.+.. ..+++.++|..+||+|||||++|||+++|.++.
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence            5999999999999999999999999999999998774 457888899999999999999999999998874

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.76  E-value=3.7e-18  Score=132.73  Aligned_cols=75  Identities=28%  Similarity=0.509  Sum_probs=67.4

Q ss_pred             hccCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          159 EKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       159 ~~~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++.+++|+||+++|||+|.+||++|+++|++|+++||+.+.+. .++..++|+.+||+|||||++|||+++|.++.
T Consensus         4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l   78 (79)
T TIGR02190         4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL   78 (79)
T ss_pred             cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence            3456889999999999999999999999999999999987654 46778899999999999999999999998764

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.74  E-value=1.4e-17  Score=130.61  Aligned_cols=74  Identities=18%  Similarity=0.436  Sum_probs=67.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH-----cCCceEEEEcCCChhHHHHHHHHhCC--CCccEEEeCCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ-----RGLKFVEINVDVFPPREKELIRRTGS--SQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e-----lgV~y~eiDVd~d~e~~~eL~~ltG~--~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ++|+||+++|||+|++|+++|++     .+++|+++||+.+....+++.+++|+  .+||+|||||++|||++++.++++
T Consensus         1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~   80 (85)
T PRK11200          1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK   80 (85)
T ss_pred             CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHH
Confidence            46999999999999999999999     79999999999887677889888886  899999999999999999998865


Q ss_pred             c
Q 039225          236 S  236 (327)
Q Consensus       236 s  236 (327)
                      .
T Consensus        81 ~   81 (85)
T PRK11200         81 E   81 (85)
T ss_pred             H
Confidence            3

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.73  E-value=1.7e-17  Score=131.43  Aligned_cols=73  Identities=22%  Similarity=0.506  Sum_probs=65.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCC--CCccEEEeCCEEeechHHHHHhhhcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGS--SQVPQVFLNDKLFGGLVALNSLRNSG  237 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~--~tVPqIFInGe~IGG~deL~~L~esG  237 (327)
                      |+||+++|||||.+|+++|++++     +.|+++||+.+...++++.+.+|+  .+||+|||||++|||+++|.++++++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~   81 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN   81 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence            78999999999999999999984     679999999776567789889997  89999999999999999999997764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.73  E-value=3.6e-17  Score=120.12  Aligned_cols=71  Identities=31%  Similarity=0.604  Sum_probs=68.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +|++|++++||+|++++.+|++++++|.++|+..+++.++++++++|..++|+||+||++|||++++++++
T Consensus         1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~   71 (72)
T cd02066           1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH   71 (72)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence            48999999999999999999999999999999999989999999999999999999999999999999875

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.5e-17  Score=156.93  Aligned_cols=136  Identities=20%  Similarity=0.246  Sum_probs=114.3

Q ss_pred             cCCcEEEEEcC------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC----CCccEEEeCCEEeechHHH
Q 039225          161 IKGRISFFSRS------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS----SQVPQVFLNDKLFGGLVAL  230 (327)
Q Consensus       161 ~~~kVvLYsk~------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~----~tVPqIFInGe~IGG~deL  230 (327)
                      ...+||||+++      +...|..|+++|+.++|.|.++||++|..+++||+++.|.    .++|+|||+|++|||.+++
T Consensus       129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV  208 (281)
T KOG2824|consen  129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV  208 (281)
T ss_pred             CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence            34689999985      7999999999999999999999999999999999999875    7899999999999999999


Q ss_pred             HHhhhcCchHHHHHHhhcc-----CCCCCCCCCCCCCCCCCccchhhhH--HHHHHHHHHhccCccccccccceeccCCc
Q 039225          231 NSLRNSGTFDERFREMLGR-----KCSGDAPAPPLYGFDDDDEEEESMD--EMLLSVKLLRQRLPIQDRLIKLKIVKNCF  303 (327)
Q Consensus       231 ~~L~esGeL~~~Lk~~~~~-----~~~~~ap~~P~~g~~~~~~~~~e~D--Ela~lV~~l~~~~~Ikdr~~~l~~~~~cF  303 (327)
                      ++|++.|+|.++|++...+     ..++++++.|+.++.   ++.....  +-...+.++..     ++.++|.+++.|+
T Consensus       209 ~~LnE~GkL~~lL~~~p~~~~~~C~~CGg~rFlpC~~C~---GS~kv~~~~~~~~~~~rC~~-----CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  209 VRLNEEGKLGKLLKGIPCEGGGVCESCGGARFLPCSNCH---GSCKVHEEEEDDGGVLRCLE-----CNENGLVRCPVCS  280 (281)
T ss_pred             hhhhhcchHHHHHhcCCCCCCCcCCCcCCcceEecCCCC---CceeeeeeccCCCcEEECcc-----cCCCCceeCCccC
Confidence            9999999999999998743     234789999999888   5555433  22233444433     8889999999997


Q ss_pred             c
Q 039225          304 S  304 (327)
Q Consensus       304 ~  304 (327)
                      .
T Consensus       281 ~  281 (281)
T KOG2824|consen  281 N  281 (281)
T ss_pred             C
Confidence            3

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.69  E-value=8.4e-17  Score=130.35  Aligned_cols=80  Identities=18%  Similarity=0.329  Sum_probs=73.7

Q ss_pred             EEEEEcCC------ChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC----CCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSN------CRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS----SQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~------Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~----~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      |+||+++-      -..|..++.+|+.++|+|+++||+.+++.+++|.+.+|.    +++|||||||+||||++++.+|+
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~   81 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK   81 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence            77888752      467999999999999999999999999999999999864    99999999999999999999999


Q ss_pred             hcCchHHHHH
Q 039225          235 NSGTFDERFR  244 (327)
Q Consensus       235 esGeL~~~Lk  244 (327)
                      ++|+|.++|+
T Consensus        82 e~g~L~~lLk   91 (92)
T cd03030          82 ENNTLEEFLK   91 (92)
T ss_pred             hCCCHHHHhC
Confidence            9999999885

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.5e-16  Score=146.59  Aligned_cols=85  Identities=14%  Similarity=0.304  Sum_probs=81.3

Q ss_pred             CCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhc
Q 039225          162 KGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNS  236 (327)
Q Consensus       162 ~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~es  236 (327)
                      .++|+||+|     +.|+|.+++..+|+++|++|..+||..|+++|+.+++++.|+|+|||||||+++||+|.+.+++++
T Consensus       138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~  217 (227)
T KOG0911|consen  138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEK  217 (227)
T ss_pred             cCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhc
Confidence            478999999     579999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHh
Q 039225          237 GTFDERFREM  246 (327)
Q Consensus       237 GeL~~~Lk~~  246 (327)
                      |+|+..|+++
T Consensus       218 geL~~~l~~~  227 (227)
T KOG0911|consen  218 GELVYTLKEA  227 (227)
T ss_pred             ccHHHHhhcC
Confidence            9999998753

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.66  E-value=4.1e-16  Score=114.60  Aligned_cols=60  Identities=27%  Similarity=0.650  Sum_probs=58.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I  224 (327)
                      |+||++++||+|.+++++|+++|++|+++||+.+++.+++|++.+|..++|+|||||++|
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence            789999999999999999999999999999999999999999999999999999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.64  E-value=6.7e-16  Score=154.19  Aligned_cols=83  Identities=23%  Similarity=0.460  Sum_probs=72.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHH---HH-----HHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK---EL-----IRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~---eL-----~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+|+||++++||+|++||++|++.||+|+++||+.++...+   ++     ...+|..+||||||||++|||+++++.  
T Consensus         2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~--   79 (410)
T PRK12759          2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA--   79 (410)
T ss_pred             CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence            46999999999999999999999999999999998775433   22     223689999999999999999999987  


Q ss_pred             hcCchHHHHHHhh
Q 039225          235 NSGTFDERFREML  247 (327)
Q Consensus       235 esGeL~~~Lk~~~  247 (327)
                      .+|+|.++|++.+
T Consensus        80 ~~g~l~~~~~~~~   92 (410)
T PRK12759         80 RAGEVIARVKGSS   92 (410)
T ss_pred             HhCCHHHHhcCCc
Confidence            8999999998755

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.55  E-value=1.4e-14  Score=110.39  Aligned_cols=63  Identities=27%  Similarity=0.576  Sum_probs=58.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE-EeechH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK-LFGGLV  228 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe-~IGG~d  228 (327)
                      |+||++++||+|++|+++|+++|++|+++||+.+++.+++++. .|..+||+|+++|+ +|||++
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~   64 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-QGFRQVPVIVADGDLSWSGFR   64 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCcccCEEEECCCcEEeccC
Confidence            5799999999999999999999999999999999988888876 49999999999775 999996

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.54  E-value=3.1e-14  Score=112.24  Aligned_cols=65  Identities=34%  Similarity=0.629  Sum_probs=60.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d  228 (327)
                      ++|+||++++||+|.++|++|++.||+|+++||+.+++..++++. .|..+||+|+++|..++||+
T Consensus         1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~   65 (81)
T PRK10329          1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_pred             CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence            369999999999999999999999999999999999988888876 59999999999999999995

>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins

Probab=99.45  E-value=3.3e-14  Score=115.08  Aligned_cols=52  Identities=27%  Similarity=0.420  Sum_probs=48.6

Q ss_pred             HHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhcc--------ccChhhhhhcC
Q 039225          276 MLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF--------KCDRMKVRFVL  327 (327)
Q Consensus       276 la~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~--------~~~r~~Av~~~  327 (327)
                      +..||+.|+++..||+||++|++|++||+|+|+||||+++.        +.+|.+||+|+
T Consensus         3 Wn~ii~~~r~g~~vk~rR~~lr~y~~CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~   62 (92)
T cd04447           3 WNEVTELFRAGMPLRKHRQHFKSYENCFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLL   62 (92)
T ss_pred             HHHHHHHHHccCChHHHHHhcccCccccchHHHHHHHHHHHHhccccCCCCCHHHHHHHH
Confidence            45799999999999999999999999999999999999997        68999999874

BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.

>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins

Probab=99.40  E-value=1.2e-13  Score=112.70  Aligned_cols=50  Identities=30%  Similarity=0.455  Sum_probs=45.6

Q ss_pred             HHHHHHHhccCccccccccceeccCCcchhHHHHHHHhcc---------ccChhhhhhc
Q 039225          277 LLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF---------KCDRMKVRFV  326 (327)
Q Consensus       277 a~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~---------~~~r~~Av~~  326 (327)
                      ..||+.|+.+..|||||++|++|++||+|+||||||..+.         ..+|++||+|
T Consensus         2 n~ii~~~r~~v~ikdRr~~lk~y~~CF~GsEaVDwL~~~l~~n~~f~~~~~tR~~Av~l   60 (95)
T cd04446           2 NSIIDALQTQVEVKKRRHNLKSYHDCFLGSEAVDVVLAHLMQNKYFGDVDVPRAKAVRL   60 (95)
T ss_pred             hHHHHHHHhcCcccceeeeceecccccchHHHHHHHHHHHhhccccCcccCCHHHHHHH
Confidence            4689999999999999999999999999999999887743         5799999986

DEPDC4 is a DEP domain containing protein of unknown function.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.38  E-value=2.4e-12  Score=94.96  Aligned_cols=65  Identities=20%  Similarity=0.554  Sum_probs=60.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d  228 (327)
                      +|++|+.+||++|++++.+|++.+++|..+|++.+++..+++.+.+|..++|+++++|+.++|++
T Consensus         1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~   65 (74)
T TIGR02196         1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFD   65 (74)
T ss_pred             CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence            38999999999999999999999999999999998888888888899999999999999998874

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.31  E-value=1.4e-11  Score=90.92  Aligned_cols=66  Identities=30%  Similarity=0.668  Sum_probs=61.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVA  229 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~de  229 (327)
                      .|++|+.+||++|.+++.+|++.+++|..+|++.+.+..+++.++++..++|+|+++|+.++|++.
T Consensus         1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence            489999999999999999999999999999999888888889888889999999999999999864

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins

Probab=99.29  E-value=8.9e-13  Score=105.01  Aligned_cols=45  Identities=33%  Similarity=0.501  Sum_probs=41.7

Q ss_pred             HHhccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          282 LLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       282 ~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      ++++..+||||++++++|++||+|+||||||+++.. .+|++||.+
T Consensus         8 ~~~~~~~IkdR~~~~r~y~~cF~GselVdWL~~~~~~~sR~eAv~l   53 (82)
T cd04442           8 RLHEAKVIKDRRHHLRTYPNCFVGKELIDWLIEHKEASDRETAIKI   53 (82)
T ss_pred             ecCCCCeeeeeEECCEEcCceeEcHHHHHHHHHcCCCCCHHHHHHH
Confidence            457889999999999999999999999999999988 689999975

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins

Probab=99.24  E-value=5.9e-12  Score=102.47  Aligned_cols=41  Identities=24%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          286 RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       286 ~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      ..+||||++++++|++||+|+||||||+++.+ .+|+|||.+
T Consensus        21 ~~likdR~~~l~~y~~cFvGsElVdWLi~~g~~~tR~eAv~~   62 (93)
T cd04440          21 TPVVKDRDYHLKTYKSVVPASKLVDWLLAQGDCRTREEAVIL   62 (93)
T ss_pred             ccceeeceeccEEcccccchhHHHHHHHHcCCCCCHHHHHHH
Confidence            45999999999999999999999999999876 899999975

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins

Probab=99.23  E-value=4.4e-12  Score=100.75  Aligned_cols=51  Identities=27%  Similarity=0.332  Sum_probs=46.0

Q ss_pred             HHHHHHHHhccC--ccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          276 MLLSVKLLRQRL--PIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       276 la~lV~~l~~~~--~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      ++.||++|++..  .||||++++++|++||+|+|+||||+++.+  .+|+|||++
T Consensus         1 l~~i~~~m~~~~~~~i~~r~~~~~~~~~cF~G~e~VdWL~~~~~~~~~r~eAv~l   55 (83)
T cd04449           1 LAEIAEAMRDPSGIGIFDRSWHKGLPSNCFIGSEAVSWLINNFEDVDTREEAVEL   55 (83)
T ss_pred             CHHHHHHHhCCCCCceeechhcCccCCcceEhHHHHHHHHHhCCCCCCHHHHHHH
Confidence            468999997743  699999999999999999999999999976  899999976

DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.23  E-value=4.8e-11  Score=89.84  Aligned_cols=64  Identities=14%  Similarity=0.341  Sum_probs=56.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEe-CCEEeech
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFL-NDKLFGGL  227 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFI-nGe~IGG~  227 (327)
                      +|+||+.+||++|++++.+|++++++|+.+|++.++...+++.+++ |..++|+|++ ||+.+...
T Consensus         1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~   66 (77)
T TIGR02200         1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP   66 (77)
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence            4899999999999999999999999999999999888888888887 8999999977 56666544

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins

Probab=99.21  E-value=5.3e-12  Score=100.16  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=39.5

Q ss_pred             hccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      ..+..||||++++++|++||+|+||||||+.+.. .+|+|||.+
T Consensus        10 ~~gv~i~drr~~~~~y~~cF~GselVdWL~~~~~~~~R~eAv~~   53 (81)
T cd04448          10 STGIEFQDHRYRLRTYTNCILGKELVNWLIRQGKAATRVQAIAI   53 (81)
T ss_pred             CCCCeeEEEEECCEEcCcccChHHHHHHHHHcCCCCCHHHHHHH
Confidence            3467899999999999999999999999999887 999999975

PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.

>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins

Probab=99.19  E-value=8.3e-12  Score=99.14  Aligned_cols=43  Identities=28%  Similarity=0.288  Sum_probs=39.8

Q ss_pred             hccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      .++.+||||++++++|++||+|+|+||||+++.. .+|+|||.+
T Consensus        10 ~~~~~ikdr~~~~~~~~~cF~GselVdWL~~~~~~~~r~eAv~l   53 (81)
T cd04439          10 KQGSLIKDRRRKLSTFPKCFLGNEFVSWLLEIGEISKPEEGVNL   53 (81)
T ss_pred             cCCCceEeeEECcEEcCceeEhHHHHHHHHHcCCCCCHHHHHHH
Confidence            5678999999999999999999999999999998 578999875

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins

Probab=99.15  E-value=1.9e-11  Score=97.67  Aligned_cols=49  Identities=33%  Similarity=0.457  Sum_probs=43.1

Q ss_pred             HHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          278 LSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       278 ~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      .+|+.|.+   +..||||++++++|++||+|+|||+||+++.+  .+|+||+.+
T Consensus         2 ~i~~~m~~~~~Gl~ikdR~~~~~~~p~~F~GsdlVdWL~~~~~~~~~R~eAv~~   55 (84)
T cd04438           2 GIPRVMRRPDSGLEIKDRMWLKITIPNSFIGSDLVDWLLSHVEGLTDRREARKY   55 (84)
T ss_pred             chhHhhcCCCCCCceEEEEEeeEECCccccchHHHHHHHHhCCCCCCHHHHHHH
Confidence            47888843   45599999999999999999999999999986  799999875

Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.

>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins

Probab=99.15  E-value=1.7e-11  Score=97.77  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=37.6

Q ss_pred             CccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          287 LPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       287 ~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      .+||||++++++|++||+|+||||||+++.. .+|+|||.+
T Consensus        15 ~~ikdR~~~~~~y~~cF~GselVdWL~~~~~~~sR~eAv~l   55 (83)
T cd04443          15 DIVKDRRCGLRTYKGVFCGCDLVSWLIEVGLAQDRGEAVLY   55 (83)
T ss_pred             hhhccceecceeccccccHHHHHHHHHHcCCCCCHHHHHHH
Confidence            5999999999999999999999999999876 999999975

GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.

>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins

Probab=99.14  E-value=2.5e-11  Score=97.36  Aligned_cols=43  Identities=21%  Similarity=0.129  Sum_probs=39.7

Q ss_pred             hccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      ..+.+||||++++++|++||+|+||||||+++.. .+|+|||++
T Consensus        14 ~~~~~ik~R~~~~~~y~~cF~GsElVdWL~~~~~~~sR~eAv~l   57 (85)
T cd04441          14 TENSILQVREEEGVKYERTFVGSEFIDWLLQEGEAESRREAVQL   57 (85)
T ss_pred             CCCCceeeeEeCCEEcCCEeEchHHHHHHHHcCCCCCHHHHHHH
Confidence            4467999999999999999999999999999998 799999975

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins

Probab=99.12  E-value=2.9e-11  Score=103.36  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=39.5

Q ss_pred             hccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      +++.+||||++++++|++||+|+||||||+++..  .+|++||++
T Consensus        12 ~~~~~ikdR~~~~~~y~~cF~GsElVdWLl~~~~~v~sR~eAv~l   56 (125)
T cd04437          12 DAPHLIRDRKYHLRTYRQCCVGTELVDWLLQQSPCVQSRSQAVGM   56 (125)
T ss_pred             cCcccceeeeECCEECCcccccHHHHHHHHHcCCCCCCHHHHHHH
Confidence            4468999999999999999999999999999987  499999975

Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.09  E-value=2.7e-10  Score=84.60  Aligned_cols=58  Identities=22%  Similarity=0.362  Sum_probs=50.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG  225 (327)
                      +|++|+++|||+|.+++.+|+++     ++.|..+|++.+++    +.+.+|..++|+|++||++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence            48999999999999999999876     68899999987654    566789999999999999875

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.08  E-value=8.3e-10  Score=90.88  Aligned_cols=81  Identities=16%  Similarity=0.308  Sum_probs=63.8

Q ss_pred             cEEEEEcCCC------hhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC---------CCCccEEEeCCEEeechH
Q 039225          164 RISFFSRSNC------RDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG---------SSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       164 kVvLYsk~~C------p~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG---------~~tVPqIFInGe~IGG~d  228 (327)
                      .|.||+++.-      ..|.++..+|+.++|+|+.+||..+++.++.+++..|         ..-.||||+||+++|+++
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye   81 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE   81 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence            4778886532      3588999999999999999999999999999998874         334589999999999999


Q ss_pred             HHHHhhhcCchHHHHH
Q 039225          229 ALNSLRNSGTFDERFR  244 (327)
Q Consensus       229 eL~~L~esGeL~~~Lk  244 (327)
                      ++.++.++|+|.+.|+
T Consensus        82 ~f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   82 DFEEANENGELEEFLK   97 (99)
T ss_dssp             HHHHHHCTT-HHHHHT
T ss_pred             HHHHHHhhCHHHHHhC
Confidence            9999999999999986

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins

Probab=99.06  E-value=1e-10  Score=97.59  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=45.9

Q ss_pred             HHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          276 MLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       276 la~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      |..|+..|++   ++-+.+|++++++|++||+|+|+||||++++. .+|.|||.+
T Consensus         2 L~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~i~R~EAv~l   56 (109)
T cd04444           2 LHRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFAASRLEAVTL   56 (109)
T ss_pred             HHHHHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCCCCHHHHHHH
Confidence            6789999976   56777999999999999999999999999987 999999975

Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways

Probab=98.87  E-value=9.3e-10  Score=84.32  Aligned_cols=41  Identities=44%  Similarity=0.664  Sum_probs=37.0

Q ss_pred             cCccccccccceeccCCcchhHHHHHHHhcc---ccChhhhhhc
Q 039225          286 RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF---KCDRMKVRFV  326 (327)
Q Consensus       286 ~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~---~~~r~~Av~~  326 (327)
                      |+.|+||++++++|++||+|+|+||||+++.   -.+|++|+.+
T Consensus         1 Gv~i~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~~~r~eA~~l   44 (74)
T PF00610_consen    1 GVPIKDRRKRLKTYPNCFTGSEAVDWLMDNFEGFVRDREEAVQL   44 (74)
T ss_dssp             SSCSEEEECSSEEECCEEEHHHHHHHHHHTSCTSTSSHHHHHHH
T ss_pred             CCccEEEEECCEEcCCEeEhHHHHHHHHHhccccccCHHHHHHH
Confidence            4679999999999999999999999999743   5999999976

It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.86  E-value=1.6e-08  Score=77.74  Aligned_cols=71  Identities=13%  Similarity=0.184  Sum_probs=60.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLRN  235 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~e  235 (327)
                      ++||+.++||+|.+++.+|+++|++|+.++++.+.....++.++++..+||++..  +|..+.+...|.+..+
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~   74 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF   74 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence            6899999999999999999999999999999876656678888889999999987  3677888887776543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.82  E-value=1.5e-08  Score=72.73  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=58.8

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +||+.++||+|.+++.+|+.+|++|+.++++.+.....++.+.++..++|.++++|..+++...+.+.
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y   69 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY   69 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            68999999999999999999999999999986543333677888999999999999999998877654

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin

Probab=98.78  E-value=2.6e-09  Score=82.44  Aligned_cols=42  Identities=38%  Similarity=0.595  Sum_probs=39.0

Q ss_pred             ccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          285 QRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       285 ~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      .+..+++|++++++|++||+|+|+|+||+++.. .+|++|+.+
T Consensus         3 ~gl~~~~~~~~~~~~~~~F~G~e~v~wL~~~~~~~~r~eA~~l   45 (77)
T smart00049        3 TGLKLRDRKYFLKTYPNCFTGSELVDWLMDNLEIIDREEAVHL   45 (77)
T ss_pred             CCcccEEEEECCEECcceeEcHHHHHHHHHcCCcCCHHHHHHH
Confidence            467789999999999999999999999999999 799999976

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.78  E-value=5.1e-08  Score=74.21  Aligned_cols=68  Identities=19%  Similarity=0.395  Sum_probs=55.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC----CEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN----DKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn----Ge~IGG~deL~~L~  234 (327)
                      +|+||+.++||+|++++.+|.++|++|+.++++.  ..+.++ +..+..+||+++++    |..+.....+.+..
T Consensus         1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL   72 (77)
T cd03040           1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL   72 (77)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence            4889999999999999999999999999999863  333445 35788999999987    67777777776543

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

Probab=98.76  E-value=4.4e-09  Score=81.43  Aligned_cols=48  Identities=33%  Similarity=0.475  Sum_probs=42.8

Q ss_pred             HHHHHhccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          279 SVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       279 lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      .+.+.+.+..+++|+++++.|++||+|+|+|+||++... .+|++|+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~F~G~e~v~WL~~~~~~~~r~ea~~~   53 (81)
T cd04371           5 IMLDSDSGVPIKDRKYHLKTYPNCFTGSELVDWLLDNLEAITREEAVEL   53 (81)
T ss_pred             HhhccCCCCccEEEEECCEECCceeEcHHHHHHHHHhCCCCCHHHHHHH
Confidence            444556678999999999999999999999999999998 999999876

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.69  E-value=9.6e-08  Score=71.75  Aligned_cols=67  Identities=15%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L~  234 (327)
                      .||+..+||+|.+++.+|..+|++|+.+.++.....  ...+.++..+||+++++ |..+++...+.+..
T Consensus         2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL   69 (71)
T cd03037           2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFI   69 (71)
T ss_pred             ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence            489999999999999999999999999988854322  23356788899999997 88999999887754

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7

Probab=98.63  E-value=1.4e-08  Score=81.36  Aligned_cols=41  Identities=17%  Similarity=0.192  Sum_probs=38.1

Q ss_pred             cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          286 RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       286 ~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      |.-+++|+++++.|++||+|+++|+||+++.. .+|+||+.+
T Consensus        12 Gv~~~~~r~~~~~~~~~F~G~~~v~WL~~~~~~~~~~EA~~~   53 (88)
T cd04450          12 GVRMRTEKSFLTTVPYAFTGKAIVQWLMDCTDVVDPSEALEI   53 (88)
T ss_pred             CeeeeeeEEeeeEcCceeEhHHHHHHHHHCCCCCCHHHHHHH
Confidence            56778999999999999999999999999998 999999875

This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.52  E-value=1.3e-07  Score=78.49  Aligned_cols=50  Identities=20%  Similarity=0.602  Sum_probs=44.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQV  214 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tV  214 (327)
                      |+||++++|++|++|+++|+++|++|+++|+..++..+.+|.++.+...+
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~~   50 (111)
T cd03036           1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSGL   50 (111)
T ss_pred             CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcCC
Confidence            57999999999999999999999999999999988888888877665443

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.51  E-value=6.3e-07  Score=70.92  Aligned_cols=72  Identities=14%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSL  233 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L  233 (327)
                      ..+.++||+.+.||+|.+++.+|...|++|+.++++... ..+++.+.++..+||++.++ |..+.....+.+.
T Consensus        15 ~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y   87 (89)
T cd03055          15 VPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY   87 (89)
T ss_pred             CCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence            567899999999999999999999999999999887543 23457788889999999998 7888877766654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.50  E-value=5.3e-07  Score=68.59  Aligned_cols=55  Identities=27%  Similarity=0.503  Sum_probs=44.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH----cC--CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ----RG--LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e----lg--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe  222 (327)
                      +|++|+.+||++|+.++..|.+    ++  +.+..+|++.+++    +.+.+|..++|++++||+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAMEYGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHHcCCccCCEEEECCE
Confidence            4889999999999999999864    34  5677888876654    344578899999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.46  E-value=8e-07  Score=66.40  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||+.++||+|.+++.+|+..|++|+.++++... ...++++.....+||++..+|..+.....+.+..
T Consensus         1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   69 (73)
T cd03059           1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYL   69 (73)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            36999999999999999999999999998887542 2356777788899999988888777777666543

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.45  E-value=8.4e-07  Score=66.81  Aligned_cols=66  Identities=14%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHH
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNS  232 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~  232 (327)
                      +||+.++||+|.+++.+|.++|++|+.++++.... ..++.+++...+||++..+ |..+.....+.+
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence            68999999999999999999999999998876432 3567788899999999996 888777666654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.44  E-value=1.5e-06  Score=68.11  Aligned_cols=53  Identities=15%  Similarity=0.582  Sum_probs=44.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcC----CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRG----LKFVEINVDVFPPREKELIRRTGSSQVPQVFLND  221 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInG  221 (327)
                      +|++|++++|+.|..|+.+|....    +.++.+||+.+++    +.+.+|. .+|++.++|
T Consensus         1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG   57 (81)
T ss_dssp             -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred             CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence            489999999999999999999764    6689999997776    6667785 799999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.44  E-value=2.9e-07  Score=74.97  Aligned_cols=49  Identities=18%  Similarity=0.385  Sum_probs=44.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQ  213 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~t  213 (327)
                      |+||++++|++|++|+++|++.|++|+++||..++...++|.++.+...
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~   49 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG   49 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence            5799999999999999999999999999999988887888888776544

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.40  E-value=1e-06  Score=65.45  Aligned_cols=68  Identities=19%  Similarity=0.370  Sum_probs=54.5

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      +||+.++|++|.+++.+|+.+|++|+.+.++..  .....++.+++...++|++.+ ||..+.....+.+.
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y   72 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY   72 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence            699999999999999999999999988887642  234456888888999999997 66666666655443

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.37  E-value=1.7e-06  Score=66.09  Aligned_cols=67  Identities=13%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             EEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          167 FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       167 LYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ||..++||||.+++-+|+.+|++|+.++++.... ..++.++++..+||++..||..+.+...|.+..
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL   67 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYL   67 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHH
Confidence            6899999999999999999999999999986443 567888899999999999999999888876653

...

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.37  E-value=1.7e-06  Score=64.91  Aligned_cols=69  Identities=19%  Similarity=0.171  Sum_probs=57.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++||+.+.|++|.+++.+|++.|++|+.++++.  .....+++.+++...+||.+..+|..+.....+.+.
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   71 (74)
T cd03045           1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY   71 (74)
T ss_pred             CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            369999999999999999999999999888874  334456788888889999999998877766666544

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.34  E-value=1.2e-06  Score=70.11  Aligned_cols=59  Identities=24%  Similarity=0.507  Sum_probs=49.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG  225 (327)
                      -.|.+|+.+||++|..++.+++++     ++.|..+|++..+    ++.+.+|..++|.+++||+.++
T Consensus        14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~----e~a~~~~V~~vPt~vidG~~~~   77 (89)
T cd03026          14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ----DEVEERGIMSVPAIFLNGELFG   77 (89)
T ss_pred             EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH----HHHHHcCCccCCEEEECCEEEE
Confidence            357889999999999999998766     6889999998664    3555789999999999998664

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.30  E-value=2.1e-06  Score=66.42  Aligned_cols=55  Identities=16%  Similarity=0.451  Sum_probs=43.1

Q ss_pred             cEEEEEcCCChhHHHH----HHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225          164 RISFFSRSNCRDCTAV----RRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~a----k~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I  224 (327)
                      .|.+|+ +|||.|+.+    +++++++++.++.++|+...+    .. .+|..++|+|++||+.+
T Consensus         2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~-~~~v~~vPti~i~G~~~   60 (76)
T TIGR00412         2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----IL-EAGVTATPGVAVDGELV   60 (76)
T ss_pred             EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HH-HcCCCcCCEEEECCEEE
Confidence            466776 999999999    567778888899899983222    22 36999999999999755

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.28  E-value=3.8e-06  Score=62.44  Aligned_cols=69  Identities=17%  Similarity=0.355  Sum_probs=57.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +++|+.+.|++|.+++.+|...|++|+.++++..  .....++.+.+...++|.+..+|..+.....+.+.
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y   71 (73)
T cd03056           1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY   71 (73)
T ss_pred             CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            3689999999999999999999999999988742  33446677788889999999999888777766543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PHA02125 thioredoxin-like protein

Probab=98.26  E-value=3.6e-06  Score=64.64  Aligned_cols=56  Identities=20%  Similarity=0.370  Sum_probs=42.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG  225 (327)
                      |++|+.+||+.|+.++.+|++..+.  .++|+.+..  .++.+.++..++|++. +|+.++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~~~--~~~vd~~~~--~~l~~~~~v~~~PT~~-~g~~~~   57 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVEYT--YVDVDTDEG--VELTAKHHIRSLPTLV-NTSTLD   57 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHhhe--EEeeeCCCC--HHHHHHcCCceeCeEE-CCEEEE
Confidence            8999999999999999999876544  445543332  3577778999999987 676543

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.26  E-value=1.9e-06  Score=73.73  Aligned_cols=47  Identities=17%  Similarity=0.440  Sum_probs=42.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS  211 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~  211 (327)
                      |+||++++|++|++|+++|++.|++|+++|+..++..+++|..+...
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~   48 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRM   48 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHH
Confidence            88999999999999999999999999999999998888888776543

>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins

Probab=98.24  E-value=5.3e-07  Score=73.88  Aligned_cols=51  Identities=16%  Similarity=0.246  Sum_probs=41.4

Q ss_pred             HHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhcccc-Chhhhhhc
Q 039225          276 MLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKC-DRMKVRFV  326 (327)
Q Consensus       276 la~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~~-~r~~Av~~  326 (327)
                      +.+||..|++   +.---+++...++|++||+|+.+||||+.+... +|.||+-+
T Consensus         2 L~~lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~l   56 (99)
T cd04445           2 LSALYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLML   56 (99)
T ss_pred             HHHHHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHH
Confidence            5677888854   434447788889999999999999999999996 49999754

Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=98.16  E-value=3.8e-06  Score=70.08  Aligned_cols=46  Identities=24%  Similarity=0.581  Sum_probs=41.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      |+||+.++|++|++|+++|++.|++|+.+|+..++..+++|.++..
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~   46 (117)
T TIGR01617         1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS   46 (117)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence            5799999999999999999999999999999998887777776543

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=98.14  E-value=4.7e-06  Score=69.37  Aligned_cols=46  Identities=20%  Similarity=0.467  Sum_probs=41.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      |+||+.++|++|++|+++|++.|++|+.+|+..++..+.+|.++..
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~   47 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS   47 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence            7899999999999999999999999999999988877777777644

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.06  E-value=2.2e-05  Score=60.56  Aligned_cols=54  Identities=20%  Similarity=0.479  Sum_probs=40.4

Q ss_pred             cEEEEEcCCChhHHHHHHHH----HHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEE
Q 039225          164 RISFFSRSNCRDCTAVRRFF----KQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL  223 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL----~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~  223 (327)
                      +|.+ ..++|++|..+.+++    .++++.++.+|+. +.   +++ ..+|..++|.++|||+.
T Consensus         2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~~---~~~-~~ygv~~vPalvIng~~   59 (76)
T PF13192_consen    2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE-DF---EEI-EKYGVMSVPALVINGKV   59 (76)
T ss_dssp             EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT-TH---HHH-HHTT-SSSSEEEETTEE
T ss_pred             EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc-CH---HHH-HHcCCCCCCEEEECCEE
Confidence            4777 567799999877655    5668889888983 32   234 56899999999999984

...

>PRK12559 transcriptional regulator Spx; Provisional

Probab=98.05  E-value=7.9e-06  Score=70.14  Aligned_cols=46  Identities=13%  Similarity=0.375  Sum_probs=42.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      |+||+.++|++|++|+++|++.|++|+++|+..++...++|..+..
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~   47 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILR   47 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHH
Confidence            8899999999999999999999999999999998877777777654

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=98.02  E-value=1e-05  Score=69.56  Aligned_cols=46  Identities=20%  Similarity=0.468  Sum_probs=41.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      |+||+.++|+.|++|+++|+++|++|+++|+..++..+++|..+..
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~   47 (132)
T PRK13344          2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILT   47 (132)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHH
Confidence            7899999999999999999999999999999998877777766643

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=98.00  E-value=9.3e-06  Score=67.07  Aligned_cols=46  Identities=17%  Similarity=0.325  Sum_probs=41.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      |+||+.++|+.|++|+++|++.|++|+++|+..++-..++|..+..
T Consensus         1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~   46 (105)
T cd03035           1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA   46 (105)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence            5799999999999999999999999999999998877777777654

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.98  E-value=9.2e-06  Score=67.28  Aligned_cols=52  Identities=21%  Similarity=0.464  Sum_probs=41.9

Q ss_pred             cEEEE-EcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFF-SRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLY-sk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .|++| +.+||++|+.++.+|+++.     +.+..+|++.++    ++.+.+|..++|++++
T Consensus        24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~~vPt~~i   81 (113)
T cd02975          24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVERVPTTIF   81 (113)
T ss_pred             EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCCcCCEEEE
Confidence            45555 6799999999999998764     568888888655    4667789999999988

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=97.96  E-value=3.9e-05  Score=57.70  Aligned_cols=57  Identities=14%  Similarity=0.218  Sum_probs=48.6

Q ss_pred             CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      +.||+|.+++.+|+.+|++|+.++++...        ++...+||++..+|+.+.++..+.+..+
T Consensus        14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~   70 (72)
T cd03054          14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK   70 (72)
T ss_pred             CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence            38999999999999999999999998532        4566799999999999999988776543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=97.92  E-value=6.7e-05  Score=56.58  Aligned_cols=70  Identities=14%  Similarity=0.186  Sum_probs=58.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++|..+.|++|.+++-+|...|++|+.+.++..  .....++.+++...++|.+..+|..+.....+.+..
T Consensus         2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL   73 (76)
T cd03053           2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL   73 (76)
T ss_pred             eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            6799999999999999999999999999888753  233456778888899999999988888777776654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=97.89  E-value=5.5e-05  Score=57.91  Aligned_cols=69  Identities=16%  Similarity=0.282  Sum_probs=57.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +++|..++|++|.+++-+|+++|++|+.++++..  .....++.+++...+||.+..||..+.....|.+.
T Consensus         1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y   71 (73)
T cd03052           1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY   71 (73)
T ss_pred             CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            4689999999999999999999999998887653  23345688899999999999999888877766554

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.87  E-value=7.5e-05  Score=56.34  Aligned_cols=69  Identities=12%  Similarity=0.157  Sum_probs=54.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC-CCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG-SSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG-~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +.+|..+.||+|.+++-+|...|++|+.++++.. ....++.++.. ..++|.+..+|..+.....+.+..
T Consensus         1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL   70 (74)
T cd03058           1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYI   70 (74)
T ss_pred             CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence            3689999999999999999999999999887753 22234556665 489999998888777777666543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.85  E-value=2.9e-05  Score=65.13  Aligned_cols=47  Identities=15%  Similarity=0.252  Sum_probs=42.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      .|+||+.+.|+.|++|+++|+++|++|+++|+..++-.+++|..+..
T Consensus         1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~   47 (113)
T cd03033           1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG   47 (113)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence            37899999999999999999999999999999998877777877644

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]

Probab=97.77  E-value=5.8e-05  Score=72.80  Aligned_cols=80  Identities=18%  Similarity=0.362  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh------hc
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR------NS  236 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~------es  236 (327)
                      -++++|...+||||.+||++|+-+|++|..++|+  +-.+++++ .+.+..||.+.+.|+-+-..+-|..+.      ..
T Consensus        89 L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~  165 (370)
T KOG3029|consen   89 LDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR  165 (370)
T ss_pred             ceEEEEeeccCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence            4799999999999999999999999999999998  77777775 468899999999998777777666554      22


Q ss_pred             CchHHHHHH
Q 039225          237 GTFDERFRE  245 (327)
Q Consensus       237 GeL~~~Lk~  245 (327)
                      ..|.++++.
T Consensus       166 q~l~eiiq~  174 (370)
T KOG3029|consen  166 QDLGEIIQM  174 (370)
T ss_pred             CCHHHHHHh
Confidence            345555544

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.75  E-value=0.00017  Score=54.79  Aligned_cols=69  Identities=14%  Similarity=0.058  Sum_probs=57.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++|..+.|+.|.+++.+|.+.|++|+.+.++. .....++..++...++|.+..+|..+.....+....
T Consensus         2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   70 (73)
T cd03076           2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL   70 (73)
T ss_pred             cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            678999999999999999999999999998875 233446777777889999999999888887776654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.71  E-value=0.00015  Score=53.82  Aligned_cols=68  Identities=13%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++|....|+.|.+++.+|..+|++|+.+.++..  .....++.+.+...++|++..+|..+.....+.+.
T Consensus         2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   71 (73)
T cd03042           2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY   71 (73)
T ss_pred             EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            589889999999999999999999998888653  23345677788889999999999888777766554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.70  E-value=0.00015  Score=54.41  Aligned_cols=67  Identities=10%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             EEEEcCCChhHHHHHHHHHH--cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQ--RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~e--lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      ++|..+.|++|.+++-+|..  .|++|+.+.++.. ....++.+.....+||.+.. ||..+.....+.+.
T Consensus         2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y   71 (73)
T cd03049           2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEY   71 (73)
T ss_pred             EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence            68999999999999999999  8999999988742 22345667778899999985 77777777666544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.68  E-value=0.00016  Score=57.41  Aligned_cols=59  Identities=19%  Similarity=0.501  Sum_probs=44.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHH------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeech
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGL  227 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~  227 (327)
                      +++|+.+||+.|+.+...|++      -++.+..+|++.+++    +....+..++|.+++  +|+.++-.
T Consensus        17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~----l~~~~~v~~vPt~~i~~~g~~v~~~   83 (97)
T cd02949          17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE----IAEAAGIMGTPTVQFFKDKELVKEI   83 (97)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCCCeeccEEEEEECCeEEEEE
Confidence            566888999999999988876      246788888887654    445567889998854  77765433

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=97.68  E-value=0.00017  Score=54.17  Aligned_cols=69  Identities=12%  Similarity=0.094  Sum_probs=55.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++||....|+.|.+++-+|...|++|+.+.++.......++..++...++|.+..+|..+.....+.+.
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y   69 (72)
T cd03039           1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY   69 (72)
T ss_pred             CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence            368999999999999999999999999998875332223466677789999999999888777766654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.66  E-value=0.00013  Score=61.50  Aligned_cols=64  Identities=13%  Similarity=0.103  Sum_probs=43.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcCCCh--h-----HHHHHHHHh----CCCCccEE--EeCCEEeec
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVDVFP--P-----REKELIRRT----GSSQVPQV--FLNDKLFGG  226 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd~d~--e-----~~~eL~~lt----G~~tVPqI--FInGe~IGG  226 (327)
                      -|+.|+.+|||+|+.+...|+++    ++++-.+|++.+.  +     -..++.+..    +...+|++  |-||+.++.
T Consensus        26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~  105 (122)
T TIGR01295        26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSV  105 (122)
T ss_pred             EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEE
Confidence            47778899999999987777544    5778889998653  1     112343433    34559998  458986654


Q ss_pred             h
Q 039225          227 L  227 (327)
Q Consensus       227 ~  227 (327)
                      .
T Consensus       106 ~  106 (122)
T TIGR01295       106 R  106 (122)
T ss_pred             E
Confidence            4

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.65  E-value=0.0002  Score=61.67  Aligned_cols=87  Identities=17%  Similarity=0.199  Sum_probs=55.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE-e--CCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF-L--NDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-I--nGe~IGG~deL~~L~  234 (327)
                      -|+.|+.+||++|+.....|.++      ++.|..+|++.+.  ...+...++...+|+++ +  +|+.++-....   .
T Consensus        23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~---~   97 (142)
T cd02950          23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYRVDGIPHFVFLDREGNEEGQSIGL---Q   97 (142)
T ss_pred             EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcCCCCCCEEEEECCCCCEEEEEeCC---C
Confidence            35568889999999998777643      2456777776432  12455667889999885 4  47655433221   1


Q ss_pred             hcCchHHHHHHhhccCCCCCC
Q 039225          235 NSGTFDERFREMLGRKCSGDA  255 (327)
Q Consensus       235 esGeL~~~Lk~~~~~~~~~~a  255 (327)
                      ...+|.++|+.+.++.+++.+
T Consensus        98 ~~~~l~~~l~~l~~~~~~~~~  118 (142)
T cd02950          98 PKQVLAQNLDALVAGEPLPYA  118 (142)
T ss_pred             CHHHHHHHHHHHHcCCCCCcc
Confidence            223467778877776665544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=97.62  E-value=0.00039  Score=56.48  Aligned_cols=63  Identities=17%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..||||++++-.|.++|++|+.++|+.... -+.+.+++-...||++..+|..+...+.+.+..
T Consensus        20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL   82 (91)
T cd03061          20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             CCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence            579999999999999999999888875421 145777777789999999999888887776654

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.62  E-value=0.00019  Score=48.56  Aligned_cols=56  Identities=32%  Similarity=0.599  Sum_probs=45.0

Q ss_pred             EEEEEcCCChhHHHHHHHHH-----HcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFK-----QRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLND  221 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~-----elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInG  221 (327)
                      +++|...+|++|.+++..+.     ..++.+..++++......+. ....+..++|++++.+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYGVGGVPTLVVFG   61 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCCCccccEEEEEe
Confidence            46889999999999999999     56788999999887665443 2346778999998766

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.60  E-value=0.0002  Score=57.24  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             cEEEEEcCCChhHHHHHHHH------HH-c--CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFF------KQ-R--GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL------~e-l--gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||++|++....+      .+ +  ++.+..+|++.+.....++.+..|..++|++++
T Consensus        14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953          14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            36678899999999987543      11 1  567778888776655567888889999998854

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=97.59  E-value=0.00033  Score=53.34  Aligned_cols=62  Identities=15%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             EEEEEcC-------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRS-------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~-------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||...       .||+|.+++.+|+..|++|+.++++.        .+.+...++|.+..+|+.+.+...+.+..
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL   70 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHL   70 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence            5788876       57999999999999999999988863        14567889999999999988888776654

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.57  E-value=0.00041  Score=56.88  Aligned_cols=64  Identities=20%  Similarity=0.398  Sum_probs=48.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L  233 (327)
                      |+.|+.+||+.|+.+...|+++     ++.|..+|++..     ++.+..+..++|++  |-+|+.++....+..+
T Consensus        28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~~   98 (113)
T cd02957          28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL   98 (113)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecHHHh
Confidence            5568889999999998888754     456777777643     56777788999987  5699988766555544

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.55  E-value=0.00018  Score=65.77  Aligned_cols=55  Identities=22%  Similarity=0.347  Sum_probs=43.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe  222 (327)
                      .|++|+.+||++|..++.+++++     .+.+..+|++.+++    +...+|..++|+++|+++
T Consensus       136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPtl~i~~~  195 (215)
T TIGR02187       136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPKIVINKG  195 (215)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCEEEEecC
Confidence            57779999999999999999875     35566777776554    555689999999999754

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=97.53  E-value=0.00045  Score=52.98  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=54.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeC---CEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLN---DKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFIn---Ge~IGG~deL~~L  233 (327)
                      ++||..+. ++|.+++.+|+++|++|+.+.++.  ......++.+++...+||.+..+   |..+.....|.+.
T Consensus         2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y   74 (81)
T cd03048           2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLY   74 (81)
T ss_pred             eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence            67999886 999999999999999998877764  23445677788888999999887   7777776666554

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>PRK10026 arsenate reductase; Provisional

Probab=97.53  E-value=0.00017  Score=62.97  Aligned_cols=48  Identities=17%  Similarity=0.346  Sum_probs=42.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      ..|+||..+.|.-|++|++||+++|++|+++|+-.++-..++|+.+..
T Consensus         2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~   49 (141)
T PRK10026          2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIA   49 (141)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHH
Confidence            469999999999999999999999999999999988766677776644

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=97.52  E-value=0.00029  Score=63.82  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHhhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSLRN  235 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L~e  235 (327)
                      ++|....||+|.+++-+|..+|++|+.+++..+...  ...++++..+||++. .||..+++...|.+...
T Consensus         1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~--~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~   69 (209)
T TIGR02182         1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE--TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFD   69 (209)
T ss_pred             CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch--hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence            379999999999999999999999999988654322  234567788999997 78889999888877543

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>PRK10387 glutaredoxin 2; Provisional

Probab=97.52  E-value=0.00035  Score=62.17  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEE-EeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV-FLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI-FInGe~IGG~deL~~L~  234 (327)
                      ++||+...||+|.+++-+|+.+|++|+.++++..... .. .+.++..+||+| ..+|..+.....|....
T Consensus         1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL   69 (210)
T PRK10387          1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYI   69 (210)
T ss_pred             CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHH
Confidence            3689999999999999999999999999998654332 22 346677899999 46788888777766543

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.00018  Score=60.93  Aligned_cols=46  Identities=22%  Similarity=0.533  Sum_probs=41.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT  209 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt  209 (327)
                      .|+||..+.|.-|++|++||+++|++|+++|+..++-.+++|.++.
T Consensus         2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l   47 (117)
T COG1393           2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL   47 (117)
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence            4899999999999999999999999999999999887777777764

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.49  E-value=0.00064  Score=50.72  Aligned_cols=59  Identities=25%  Similarity=0.461  Sum_probs=45.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH-----cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ-----RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e-----lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-+++|+.+||++|..+...|++     .++.+..+|++...+    +.+..+...+|++++  +|+.++
T Consensus        12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~   77 (93)
T cd02947          12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE----LAEEYGVRSIPTFLFFKNGKEVD   77 (93)
T ss_pred             cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh----HHHhcCcccccEEEEEECCEEEE
Confidence            34777889999999999999987     677888888886554    344467788999876  777443

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK09381 trxA thioredoxin; Provisional

Probab=97.47  E-value=0.00054  Score=55.13  Aligned_cols=60  Identities=18%  Similarity=0.344  Sum_probs=43.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeech
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGL  227 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~  227 (327)
                      -++.|+.+||+.|+.+...|+++      ++.+..+|++..+.    +....+..++|++++  +|+.++.+
T Consensus        24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~~~   91 (109)
T PRK09381         24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAATK   91 (109)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh----HHHhCCCCcCCEEEEEeCCeEEEEe
Confidence            36668899999999998777643      35567778876554    444568899998855  88866543

>PHA02278 thioredoxin-like protein

Probab=97.44  E-value=0.00062  Score=55.98  Aligned_cols=62  Identities=13%  Similarity=0.304  Sum_probs=45.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG  225 (327)
                      -|+-|+.+||+.|+.+...|+++      .+.+..+||+.++.-..++.+..+..++|++  |-||+.++
T Consensus        17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~   86 (103)
T PHA02278         17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK   86 (103)
T ss_pred             EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence            35558889999999998877654      2458888998754223457777888999988  45888653

>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]

Probab=97.44  E-value=7.7e-05  Score=76.44  Aligned_cols=52  Identities=31%  Similarity=0.503  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHh---ccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhh
Q 039225          274 DEMLLSVKLLR---QRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRF  325 (327)
Q Consensus       274 DEla~lV~~l~---~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~  325 (327)
                      -+|+.+|+.|-   .++-||||-|-..+.||.|+|+++||||.+|-+  -+|.||-+
T Consensus       391 ~d~~~vvraMa~pdSGLeirdRmWlKItIPnafiGsDlVdWL~~hVeg~~~RkeAR~  447 (626)
T KOG3571|consen  391 MDMIIVVRAMARPDSGLEIRDRMWLKITIPNAFIGSDLVDWLVDHVEGLHERKEARK  447 (626)
T ss_pred             ccHHHHHHhhcCCCCcceeccceeeeeecchhhcchhHHHHHHHHhhhhhhHHHHHH
Confidence            38999999992   378999998888889999999999999999998  88998854

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=97.41  E-value=0.00023  Score=59.37  Aligned_cols=46  Identities=13%  Similarity=0.309  Sum_probs=40.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      |+||..++|.-|++|+++|++.|++|+.+|+...+-..++|..+..
T Consensus         1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~   46 (114)
T TIGR00014         1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA   46 (114)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence            5799999999999999999999999999999988766667766644

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.40  E-value=0.0006  Score=53.11  Aligned_cols=58  Identities=24%  Similarity=0.496  Sum_probs=43.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      -|+.|+.+||+.|+..+..|.+.      ++.+-.+|++...    .+.+..+...+|+++  -+|+.+.
T Consensus        20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~g~~~~   85 (103)
T PF00085_consen   20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK----ELCKKYGVKSVPTIIFFKNGKEVK   85 (103)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH----HHHHHTTCSSSSEEEEEETTEEEE
T ss_pred             EEEEEeCCCCCccccccceecccccccccccccchhhhhccc----hhhhccCCCCCCEEEEEECCcEEE
Confidence            46678889999999999888644      3667777877553    466677889999984  4777554

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.40  E-value=0.00078  Score=56.88  Aligned_cols=57  Identities=16%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG  225 (327)
                      |+-|+.+||+.|+.+...|.++-      +.+-.+|++..++    +...+|..++|++  |-||+.++
T Consensus        18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYELYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEE
Confidence            44599999999999988886552      4577888887664    6667788999998  45888765

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.39  E-value=0.00021  Score=73.33  Aligned_cols=60  Identities=22%  Similarity=0.408  Sum_probs=47.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG  225 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG  225 (327)
                      ...|.+|++++||||..|++.++++     +|..+.+|....++    +.+.++..+||++|+||+.++
T Consensus       117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~  181 (517)
T PRK15317        117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEARNIMAVPTVFLNGEEFG  181 (517)
T ss_pred             CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhcCCcccCEEEECCcEEE
Confidence            3568999999999999999998776     35567777665555    555678899999999998553

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=97.39  E-value=0.00029  Score=58.54  Aligned_cols=45  Identities=16%  Similarity=0.307  Sum_probs=39.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT  209 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt  209 (327)
                      |+||..++|.-|++|+++|++.|++|+++|+.+++-..++|..+.
T Consensus         1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l   45 (112)
T cd03034           1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL   45 (112)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence            579999999999999999999999999999988776566665543

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=97.38  E-value=0.00036  Score=54.08  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=49.4

Q ss_pred             CCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHhh
Q 039225          171 SNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSLR  234 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L~  234 (327)
                      ++|++|.+++.+|..+|++|+.+.++..  .....++ ++....+||.+..+ |..+.+...+.+..
T Consensus        14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL   79 (84)
T cd03038          14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL   79 (84)
T ss_pred             CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence            5799999999999999999988877643  2223344 56678899999988 88888887776654

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.38  E-value=0.00022  Score=73.23  Aligned_cols=60  Identities=23%  Similarity=0.421  Sum_probs=46.8

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG  225 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG  225 (327)
                      ..+|.+|++++||||..|++.++++.     |..+.+|....++    +.+.++..+||++||||+.++
T Consensus       118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~~VP~~~i~~~~~~  182 (515)
T TIGR03140       118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQGVPAVFLNGEEFH  182 (515)
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCcccCEEEECCcEEE
Confidence            35689999999999999999998764     4556666655554    556678899999999998654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10853 putative reductase; Provisional

Probab=97.37  E-value=0.00015  Score=61.27  Aligned_cols=45  Identities=16%  Similarity=0.293  Sum_probs=40.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT  209 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt  209 (327)
                      |+||..+.|.-|++|+++|+++|++|+.+|+-.++-..++|..+.
T Consensus         2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l   46 (118)
T PRK10853          2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI   46 (118)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence            789999999999999999999999999999998876667777664

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=97.32  E-value=0.0013  Score=49.71  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +++|..+.++.|++++-+|...|++|+.+.++..  +....++.+.....+||.+..+|..+.....+...
T Consensus         1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y   71 (76)
T cd03050           1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRY   71 (76)
T ss_pred             CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            3689999999999999999999999998887642  22334677778889999999888777666655544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=97.31  E-value=0.00044  Score=59.18  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=41.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      .|+||..+.|.-|++|+++|++.|++|+.+|+..++-..++|..+..
T Consensus         2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~   48 (126)
T TIGR01616         2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG   48 (126)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence            47899999999999999999999999999999988777777777654

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=97.31  E-value=0.001  Score=50.50  Aligned_cols=68  Identities=10%  Similarity=0.054  Sum_probs=54.3

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L  233 (327)
                      ++|+.+.|++|.+++-+|...|++|+.++++... ...+++.+++-..++|++..+ |..+.....+.+.
T Consensus         2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y   71 (75)
T cd03044           2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY   71 (75)
T ss_pred             eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence            4899999999999999999999999998887642 334567788888999999985 7767666555544

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.31  E-value=0.00076  Score=55.89  Aligned_cols=62  Identities=21%  Similarity=0.426  Sum_probs=46.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVAL  230 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL  230 (327)
                      |+.|+.+||+.|+.+...|.++     ++.+..+|++..++    +.+..+..++|++  |-+|+.++-...+
T Consensus        26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v~~vPt~l~fk~G~~v~~~~g~   94 (113)
T cd02989          26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNIKVLPTVILFKNGKTVDRIVGF   94 (113)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCCccCCEEEEEECCEEEEEEECc
Confidence            5567889999999999888663     46788888887654    5556688889987  5589866544333

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.28  E-value=0.0015  Score=59.60  Aligned_cols=60  Identities=23%  Similarity=0.410  Sum_probs=44.1

Q ss_pred             cEEEEEc---CCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSR---SNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk---~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .|++|+.   +||+.|+.+..+|++.     ++.+..++++.+..  .++.+.+|..++|++.+  ||+.++
T Consensus        22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~--~~l~~~~~V~~~Pt~~~f~~g~~~~   91 (215)
T TIGR02187        22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED--KEEAEKYGVERVPTTIILEEGKDGG   91 (215)
T ss_pred             EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc--HHHHHHcCCCccCEEEEEeCCeeeE
Confidence            4777888   9999999999998766     24456777775432  35777789999999866  655543

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=97.23  E-value=0.00069  Score=51.21  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             CChhHHHHHHHHHHcCCceEEEEcCC--Ch-hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhhh
Q 039225          172 NCRDCTAVRRFFKQRGLKFVEINVDV--FP-PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLRN  235 (327)
Q Consensus       172 ~Cp~C~~ak~iL~elgV~y~eiDVd~--d~-e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~e  235 (327)
                      .||||.+++-+|..+|++|+..-+..  .. ....++.++++..+||.+.. +|+.++....+.+..+
T Consensus         1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~   68 (70)
T PF13409_consen    1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE   68 (70)
T ss_dssp             T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred             CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence            49999999999999999988766632  22 22356888999999999998 8999998888876643

...

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.22  E-value=0.00044  Score=71.73  Aligned_cols=57  Identities=23%  Similarity=0.336  Sum_probs=47.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL  223 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~  223 (327)
                      ..|.+|..++||+|.++.+.+++.     +|..+.+|+...+    ++.+.++..+||.++|||+.
T Consensus       478 ~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~----~~~~~~~v~~vP~~~i~~~~  539 (555)
T TIGR03143       478 VNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP----DLKDEYGIMSVPAIVVDDQQ  539 (555)
T ss_pred             eEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH----HHHHhCCceecCEEEECCEE
Confidence            468899999999999988776543     6889999998765    46656899999999999973

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01068 thioredoxin thioredoxin

Probab=97.22  E-value=0.0012  Score=51.00  Aligned_cols=58  Identities=26%  Similarity=0.480  Sum_probs=42.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|+.+...|+++      ++.+-.+|.+.+.+    +.+..|..++|++++  +|+.++
T Consensus        17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~~   82 (101)
T TIGR01068        17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGIRSIPTLLLFKNGKEVD   82 (101)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCcCCEEEEEeCCcEee
Confidence            35667889999999998777653      26677778776544    445568899999876  776543

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=97.17  E-value=0.0027  Score=51.26  Aligned_cols=60  Identities=17%  Similarity=0.210  Sum_probs=43.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      |+.|+.+||+.|+.....|.++     ++.|..+|++.++.. .++.+..+...+|++++  ||+.++
T Consensus        19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~G~~v~   85 (103)
T cd02985          19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKIIEVPHFLFYKDGEKIH   85 (103)
T ss_pred             EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCCCcCCEEEEEeCCeEEE
Confidence            5558889999999998888654     466777888765432 35666778899997744  787553

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG4023 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.00099  Score=55.20  Aligned_cols=84  Identities=19%  Similarity=0.265  Sum_probs=64.5

Q ss_pred             CcEEEEEcCCChh------HHHHHHHHHHcCCceEEEEcCCChhHHHHH--------HHHhCCCCccEEEeCCEEeechH
Q 039225          163 GRISFFSRSNCRD------CTAVRRFFKQRGLKFVEINVDVFPPREKEL--------IRRTGSSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       163 ~kVvLYsk~~Cp~------C~~ak~iL~elgV~y~eiDVd~d~e~~~eL--------~~ltG~~tVPqIFInGe~IGG~d  228 (327)
                      +.|.+|+++.-+.      =..+..+|+...+.++++||..+.+.++++        +-..|.+.-||||-++++.|+++
T Consensus         2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye   81 (108)
T KOG4023|consen    2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE   81 (108)
T ss_pred             CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence            3466777654332      235667888889999999998876655443        44568888999999999999999


Q ss_pred             HHHHhhhcCchHHHHHHh
Q 039225          229 ALNSLRNSGTFDERFREM  246 (327)
Q Consensus       229 eL~~L~esGeL~~~Lk~~  246 (327)
                      .+.+..++..|++.|+-+
T Consensus        82 ~F~ea~E~ntl~eFL~la   99 (108)
T KOG4023|consen   82 LFFEAVEQNTLQEFLGLA   99 (108)
T ss_pred             HHHHHHHHHHHHHHHccC
Confidence            999999998888888643

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.13  E-value=0.0025  Score=47.97  Aligned_cols=67  Identities=15%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      .+|..+++++|.+++-+|.+.|++|+.++++..  ....+++.+++...+||.+..+|..+.....+.+
T Consensus         2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~   70 (73)
T cd03047           2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR   70 (73)
T ss_pred             EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence            589999999999999999999999998887642  2344567778888999999999887776665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=97.13  E-value=0.0017  Score=58.51  Aligned_cols=68  Identities=15%  Similarity=0.115  Sum_probs=55.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      .++||+.+.|++|.+++-+|.+.|++|+.+.|+.. ....++.+++-..+||++..||..+-....|..
T Consensus        10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~   77 (211)
T PRK09481         10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIME   77 (211)
T ss_pred             eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHH
Confidence            47899999999999999999999999999998753 233567778778999999998877666655544

>PTZ00051 thioredoxin; Provisional

Probab=97.10  E-value=0.0027  Score=49.77  Aligned_cols=60  Identities=22%  Similarity=0.440  Sum_probs=42.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEeech
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFGGL  227 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IGG~  227 (327)
                      -++.|+.+||+.|+++...|..+     ++.|..+|++...    .+.+..+..++|+++  -+|+.++.+
T Consensus        21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~~~~   87 (98)
T PTZ00051         21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS----EVAEKENITSMPTFKVFKNGSVVDTL   87 (98)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH----HHHHHCCCceeeEEEEEeCCeEEEEE
Confidence            35668899999999998888764     4667777877543    345556778889774  477655433

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00093  Score=59.06  Aligned_cols=56  Identities=23%  Similarity=0.398  Sum_probs=44.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      ||-|+.+||.-|+...-+|+++-      +.+-.+|++++.+    |...++...||+|  |.||+.+
T Consensus        65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~I~avPtvlvfknGe~~  128 (150)
T KOG0910|consen   65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYEISAVPTVLVFKNGEKV  128 (150)
T ss_pred             EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcceeeeeEEEEEECCEEe
Confidence            55699999999999999998763      4566777777665    6667888999998  5688755

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.06  E-value=0.0024  Score=48.28  Aligned_cols=67  Identities=16%  Similarity=0.261  Sum_probs=51.6

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L  233 (327)
                      +||+.+.| .|.+++.+|.+.|++|+.++++...  ....++.+++...++|.+..+ |..+.....|.+.
T Consensus         2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y   71 (77)
T cd03057           2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY   71 (77)
T ss_pred             EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence            58888876 4889999999999999887776532  334677788889999999887 7766666665554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>PRK10996 thioredoxin 2; Provisional

Probab=97.01  E-value=0.003  Score=54.09  Aligned_cols=59  Identities=19%  Similarity=0.379  Sum_probs=41.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||+.|+.....|.+.      ++.+..+|++..++    +.+..+..++|++++  +|+.+.
T Consensus        54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V~~~Ptlii~~~G~~v~  120 (139)
T PRK10996         54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRIRSIPTIMIFKNGQVVD  120 (139)
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCCCccCEEEEEECCEEEE
Confidence            346678899999999987777653      34566677765544    555678888998754  787553

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=96.91  E-value=0.004  Score=46.61  Aligned_cols=68  Identities=12%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++|+.+. +.|.+++-+|...|++|+.+.++..  .....++.+++...++|.+..+|..+.....+.+..
T Consensus         2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL   71 (76)
T cd03046           2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYL   71 (76)
T ss_pred             EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            4777665 6789999999999999988887643  233456777788899999999998888887776654

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=96.86  E-value=0.0039  Score=50.02  Aligned_cols=67  Identities=21%  Similarity=0.387  Sum_probs=40.3

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHH---c------CCceEEEEcCCChh----------------HHHHHHHHhCCCCccE
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQ---R------GLKFVEINVDVFPP----------------REKELIRRTGSSQVPQ  216 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~e---l------gV~y~eiDVd~d~e----------------~~~eL~~ltG~~tVPq  216 (327)
                      +..|++|+.+|||||+++.+.+..   .      ++.+..++++.+..                ...++.+..|...+|+
T Consensus         6 k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt   85 (112)
T PF13098_consen    6 KPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPT   85 (112)
T ss_dssp             SEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCE
Confidence            445888999999999999766653   1      23455566654321                2345777789999999


Q ss_pred             EEe-C--CE---EeechH
Q 039225          217 VFL-N--DK---LFGGLV  228 (327)
Q Consensus       217 IFI-n--Ge---~IGG~d  228 (327)
                      +++ |  |+   .+-|+-
T Consensus        86 ~~~~d~~G~~v~~~~G~~  103 (112)
T PF13098_consen   86 IVFLDKDGKIVYRIPGYL  103 (112)
T ss_dssp             EEECTTTSCEEEEEESS-
T ss_pred             EEEEcCCCCEEEEecCCC
Confidence            975 3  66   344554

...

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.80  E-value=0.003  Score=52.17  Aligned_cols=58  Identities=29%  Similarity=0.423  Sum_probs=38.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHH-------H--cCCceEEEEcCCChh---------HHHHHHHHhCCCCccEEE-eC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFK-------Q--RGLKFVEINVDVFPP---------REKELIRRTGSSQVPQVF-LN  220 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~-------e--lgV~y~eiDVd~d~e---------~~~eL~~ltG~~tVPqIF-In  220 (327)
                      .-++.|+.+||++|++....+.       .  .++.+..+|++.+..         ...++...++..++|+++ ++
T Consensus        16 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~   92 (125)
T cd02951          16 PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLD   92 (125)
T ss_pred             cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEc
Confidence            3466688999999999875442       1  145566677765421         124677778889999964 44

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=96.80  E-value=0.0043  Score=49.28  Aligned_cols=55  Identities=15%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe  222 (327)
                      -++.|+.+||+.|++....|.++      .+.+-.+|++.++.    +.+..+..++|+++  -+|+
T Consensus        21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~   83 (101)
T cd03003          21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVNSYPSLYVFPSGM   83 (101)
T ss_pred             EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCCccCEEEEEcCCC
Confidence            36678899999999998887654      24566788876543    44556788999884  4665

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=96.80  E-value=0.0035  Score=52.76  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=46.7

Q ss_pred             CcEEEEEcCC--ChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHH
Q 039225          163 GRISFFSRSN--CRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVA  229 (327)
Q Consensus       163 ~kVvLYsk~~--Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~de  229 (327)
                      ..|+.|+.+|  ||.|..+..+|.++.      +.+-.+|++.++    ++...++..++|++  |-||+.++....
T Consensus        29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~sIPTli~fkdGk~v~~~~G  101 (111)
T cd02965          29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVLRTPALLFFRDGRYVGVLAG  101 (111)
T ss_pred             CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCCcCCEEEEEECCEEEEEEeC
Confidence            3466678885  999999998886652      345577777655    57777899999998  459998775543

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.77  E-value=0.0061  Score=49.03  Aligned_cols=55  Identities=25%  Similarity=0.445  Sum_probs=38.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc----C---CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR----G---LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el----g---V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      |+.|+.+||+.|+.....|...    +   +.+..+|++ .+    ++.+..+..++|++  |-||+.+
T Consensus        21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v~~~Pt~~~~~~g~~~   84 (102)
T cd02948          21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRGKCEPTFLFYKNGELV   84 (102)
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCCCcCcEEEEEECCEEE
Confidence            5668899999999998777543    2   345666666 22    35566788999976  4577644

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=96.77  E-value=0.005  Score=48.69  Aligned_cols=52  Identities=17%  Similarity=0.356  Sum_probs=39.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .++.|+.+||+.|++....|.++       ++.+-.+|++.++.    +.+..+..++|++++
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~   77 (101)
T cd02994          19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFVTALPTIYH   77 (101)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCCcccCEEEE
Confidence            47778999999999998887644       35567777776554    555668889999975

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0043  Score=49.26  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=49.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHH-----------HhCCCCccEEEeC-CEEeechHHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIR-----------RTGSSQVPQVFLN-DKLFGGLVALN  231 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~-----------ltG~~tVPqIFIn-Ge~IGG~deL~  231 (327)
                      -++|....||.|..+++.|+.+++.|+.++|...- .+++.|.-           -.|+-.+|.+.++ |+.|=| +|+.
T Consensus         4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~Dl~   82 (85)
T COG4545           4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DDLS   82 (85)
T ss_pred             ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-chhh
Confidence            47999999999999999999999999999997642 23222211           1477889999876 455544 4444


Q ss_pred             H
Q 039225          232 S  232 (327)
Q Consensus       232 ~  232 (327)
                      +
T Consensus        83 k   83 (85)
T COG4545          83 K   83 (85)
T ss_pred             h
Confidence            3

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=96.74  E-value=0.0073  Score=54.09  Aligned_cols=61  Identities=15%  Similarity=0.308  Sum_probs=44.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVAL  230 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL  230 (327)
                      |+-|+.+||+.|+.+...|..+     .+.|..+|++..     ++....+..++|++  |.||+.++.+..+
T Consensus        87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~vG~  154 (175)
T cd02987          87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNFVRV  154 (175)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEEech
Confidence            4448889999999988877655     356777777742     56677788999977  5699977644333

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=96.71  E-value=0.0071  Score=56.84  Aligned_cols=63  Identities=14%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..||+|++++-.|..+|++|+.+.|+.... .+++.+++-..+||++..+|..+.....|.+..
T Consensus        17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL   79 (236)
T TIGR00862        17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFL   79 (236)
T ss_pred             CCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHH
Confidence            579999999999999999998888875422 356778888899999998888877776665543

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=96.71  E-value=0.0075  Score=49.40  Aligned_cols=58  Identities=19%  Similarity=0.371  Sum_probs=41.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH----c---CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ----R---GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e----l---gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      -++.|+.+||+.|+.....|.+    +   ++.+-.+|++.++.    +....|..++|+++  .+|+.++
T Consensus        27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~i~~~g~~~~   93 (111)
T cd02963          27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGAHSVPAIVGIINGQVTF   93 (111)
T ss_pred             EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCCccCCEEEEEECCEEEE
Confidence            4566889999999988766532    2   46677788776543    45567889999885  5787553

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=96.70  E-value=0.0058  Score=48.55  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=39.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--ND  221 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nG  221 (327)
                      -++.|+.+||+.|+++...++++      ++.+-.+|.+..++    +.+..|...+|++++  +|
T Consensus        22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g   83 (104)
T cd03004          22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIRAYPTIRLYPGN   83 (104)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCCcccEEEEEcCC
Confidence            36668899999999988777544      35677788876543    555568899998843  55

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=96.69  E-value=0.009  Score=46.55  Aligned_cols=56  Identities=20%  Similarity=0.448  Sum_probs=39.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      ++.|+.+||+.|+++...|+++      .+.+-.+|++..+    ++.+..+..++|++  |.+|+.+
T Consensus        18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~----~~~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP----EISEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH----HHHHhcCCccccEEEEEECCEEE
Confidence            5668899999999998888753      3445555555433    45566788889976  4577744

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=96.66  E-value=0.0065  Score=48.89  Aligned_cols=54  Identities=15%  Similarity=0.251  Sum_probs=39.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK  222 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe  222 (327)
                      ++.|+.+||++|++....|++.            .+.+-.+|.+.+.    ++.+..|..++|+++  -+|+
T Consensus        22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~v~~~Ptl~~~~~g~   89 (108)
T cd02996          22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYRINKYPTLKLFRNGM   89 (108)
T ss_pred             EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCCCCcCCEEEEEeCCc
Confidence            6678899999999998877532            2456677777654    466667889999885  4565

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=96.66  E-value=0.01  Score=45.02  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=51.4

Q ss_pred             cCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          170 RSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       170 k~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ...|++|.+++-+|...|++|+.+.++... +...++.+++...++|.+..+|+.+.....+.+.
T Consensus         7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y   71 (73)
T cd03043           7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY   71 (73)
T ss_pred             CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence            467999999999999999999988887532 2345677888889999999999888777666543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=96.64  E-value=0.0062  Score=53.63  Aligned_cols=64  Identities=23%  Similarity=0.348  Sum_probs=43.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHh--CCCCccEE--EeCCEEeechH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRT--GSSQVPQV--FLNDKLFGGLV  228 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~lt--G~~tVPqI--FInGe~IGG~d  228 (327)
                      |+.|+.+||+.|+.....|.++       ++.+-.+|++.++++.+.+.-.+  |..++|++  |.+|+.++...
T Consensus        51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~  125 (152)
T cd02962          51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRP  125 (152)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEe
Confidence            6779999999999998777543       36778889888776544332111  12338876  66888775443

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=96.64  E-value=0.0041  Score=51.18  Aligned_cols=41  Identities=20%  Similarity=0.502  Sum_probs=30.0

Q ss_pred             EEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH
Q 039225          168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR  208 (327)
Q Consensus       168 Ysk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l  208 (327)
                      |..+.|.-|++|+++|++.|++|+.+|+...+-.+++|.++
T Consensus         1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~   41 (110)
T PF03960_consen    1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELREL   41 (110)
T ss_dssp             EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHH
Confidence            78899999999999999999999999999877655565554

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.0044  Score=60.29  Aligned_cols=62  Identities=19%  Similarity=0.391  Sum_probs=49.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVAL  230 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL  230 (327)
                      +|.|+.+||+.|+.....|.++      ++.+..+|++.++.    +....|..++|+|  |++|+.|-||-..
T Consensus        47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~----vAaqfgiqsIPtV~af~dGqpVdgF~G~  116 (304)
T COG3118          47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM----VAAQFGVQSIPTVYAFKDGQPVDGFQGA  116 (304)
T ss_pred             EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh----HHHHhCcCcCCeEEEeeCCcCccccCCC
Confidence            5557789999999999999766      24567888887775    5556789999998  6899999888644

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=96.63  E-value=0.007  Score=47.28  Aligned_cols=56  Identities=13%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I  224 (327)
                      ++.|+.+||+.|++....|.+..      +.+-.+|++...    ++.+..+..++|+++  -+|+.+
T Consensus        16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP----QIAQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH----HHHHHcCCCCCCEEEEEeCCEEe
Confidence            55688899999999988776542      345666766544    455567889999986  467654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=96.58  E-value=0.0073  Score=48.77  Aligned_cols=51  Identities=22%  Similarity=0.415  Sum_probs=36.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcC-CChhHHHHHHHHhCCCCccEEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVD-VFPPREKELIRRTGSSQVPQVF  218 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd-~d~e~~~eL~~ltG~~tVPqIF  218 (327)
                      -++.|+.+||+.|++....|+++     ++.+..+|.+ .++    .+.+.++...+|+++
T Consensus        21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~   77 (100)
T cd02999          21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTIL   77 (100)
T ss_pred             EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEE
Confidence            35668999999999998888655     3455556655 333    466677889999875

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.55  E-value=0.0096  Score=45.34  Aligned_cols=53  Identities=15%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH----c----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ----R----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e----l----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-+++|+.+||++|+.+...|.+    +    ++.+..+|.+.    ...+.+..|...+|++++
T Consensus        17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~i~~~Pt~~~   77 (101)
T cd02961          17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----NNDLCSEYGVRGYPTIKL   77 (101)
T ss_pred             cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----hHHHHHhCCCCCCCEEEE
Confidence            45778999999999999887754    3    23455555554    235666678899998853

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK15113 glutathione S-transferase; Provisional

Probab=96.55  E-value=0.011  Score=53.43  Aligned_cols=69  Identities=16%  Similarity=0.149  Sum_probs=54.6

Q ss_pred             cEEEEEcC--CChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          164 RISFFSRS--NCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       164 kVvLYsk~--~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      .++||+.+  .|++|.+++-+|.++|++|+.+.++..  +....++.+++-...||++..||..|-...-|..
T Consensus         5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~   77 (214)
T PRK15113          5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAE   77 (214)
T ss_pred             eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHH
Confidence            37899965  799999999999999999998887753  2344677788888999999999877765555544

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=96.35  E-value=0.013  Score=45.83  Aligned_cols=52  Identities=19%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -+++|+.+||+.|++....|.+.      .+.+..+|++...+    +.+..|...+|++++
T Consensus        21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~~~P~~~~   78 (103)
T cd03001          21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYGVRGFPTIKV   78 (103)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCCCCccCEEEE
Confidence            36678889999999998777653      34566677765443    455668889998743

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=96.33  E-value=0.0091  Score=47.51  Aligned_cols=54  Identities=15%  Similarity=0.296  Sum_probs=38.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||++|++....|.++      .+.+..+|++.+.  ..++....+..++|++++
T Consensus        21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002          21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEE
Confidence            47778899999999987777654      2445667777532  234656678899998864

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=96.31  E-value=0.01  Score=46.05  Aligned_cols=53  Identities=15%  Similarity=0.325  Sum_probs=37.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-+++|+.+||+.|++....|...        ++.+..+|++.+.    .+.+..|...+|.+++
T Consensus        15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~i~~~P~~~~   75 (102)
T TIGR01126        15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK----DLASRFGVSGFPTIKF   75 (102)
T ss_pred             cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH----HHHHhCCCCcCCEEEE
Confidence            447889999999999887666543        2556666766544    4555678899999844

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PLN02473 glutathione S-transferase

Probab=96.30  E-value=0.016  Score=51.91  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++||+.+.+++|.+++-+|.++|++|+.+.++..  +....++.+++-..+||.+..||..|....-|.+.
T Consensus         3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y   73 (214)
T PLN02473          3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY   73 (214)
T ss_pred             eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence            6799999999999999999999999988876542  23444565677778999999999888777766653

>KOG3572 consensus Uncharacterized conserved protein, contains DEP domain [Signal transduction mechanisms]

Probab=96.29  E-value=0.002  Score=72.04  Aligned_cols=53  Identities=23%  Similarity=0.270  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          273 MDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       273 ~DEla~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      .-.++.+++.|.+ .-|+++-++-+.+++||.|+|+|.||+.++.  -+|++||++
T Consensus      1273 lStLtk~lq~m~~-~klq~~~wh~~~~e~CF~gsE~VnWL~n~f~gI~Tre~Aiky 1327 (1701)
T KOG3572|consen 1273 LSTLTKLLQLMND-IKLQYQGWHPDPNELCFRGSEWVNWLQNYFAGIETREKAIKY 1327 (1701)
T ss_pred             HHHHHHHHhccCC-CceeeecccCCcchhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence            3345555555555 5788999999999999999999999999998  899999975

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=96.29  E-value=0.013  Score=47.60  Aligned_cols=54  Identities=13%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF  218 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF  218 (327)
                      .-++.|+.+||++|++....|.+.       ++.+-.+|++.+.  .....+..+...+|+++
T Consensus        23 ~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~   83 (109)
T cd02993          23 STLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL   83 (109)
T ss_pred             CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence            457779999999999998877654       3556667776521  11223346888999884

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=96.27  E-value=0.012  Score=49.13  Aligned_cols=56  Identities=16%  Similarity=0.185  Sum_probs=40.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe  222 (327)
                      -++.|+.+||++|+.++..|.+..      +.+-.+|++.+.++   ..+.++..++|+|  |.+|+
T Consensus        32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~   95 (113)
T cd03006          32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR   95 (113)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence            467799999999999988887653      45677888765543   2234566778877  55665

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.017  Score=48.06  Aligned_cols=60  Identities=18%  Similarity=0.380  Sum_probs=43.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE----EeechH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK----LFGGLV  228 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe----~IGG~d  228 (327)
                      |+-|+.+||+-|+.+.-.+.++.     +.|-.+|+++    -.++..-.+...+|++.  .||+    ++|+..
T Consensus        25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~   95 (106)
T KOG0907|consen   25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK   95 (106)
T ss_pred             EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence            44488899999999999998774     4466788886    33455667889999984  4675    455543

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=96.24  E-value=0.013  Score=45.88  Aligned_cols=57  Identities=14%  Similarity=0.262  Sum_probs=38.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I  224 (327)
                      -++.|+.+||+.|+.....|++.         .+.+..+|.+.+.    .+.+..+..++|+++  -+|+.+
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~g~~~   86 (102)
T cd03005          19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR----ELCSEFQVRGYPTLLLFKDGEKV   86 (102)
T ss_pred             EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh----hhHhhcCCCcCCEEEEEeCCCee
Confidence            46678899999999887766433         2456666766544    344556788999875  466533

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=96.17  E-value=0.024  Score=52.98  Aligned_cols=57  Identities=12%  Similarity=0.289  Sum_probs=41.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I  224 (327)
                      -++.|+.+||+.|++....+++.    +  +.+..+|++.++    ++.+.++..++|+++  -+|+.+
T Consensus        55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIKGYPTLLLFDKGKMY  119 (224)
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCCcCCEEEEEECCEEE
Confidence            36778899999999998887654    2  445566666543    466667888999874  477755

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.14  E-value=0.014  Score=49.47  Aligned_cols=76  Identities=9%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             CcEEEEEcC-CCh--hHH----------HHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeech
Q 039225          163 GRISFFSRS-NCR--DCT----------AVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGL  227 (327)
Q Consensus       163 ~kVvLYsk~-~Cp--~C~----------~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~  227 (327)
                      ..|++|+.+ ||+  +|+          .+.++|+..++.+..+|++.+++    |...+|..++|+|  |.||+.+. +
T Consensus        28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~~I~~iPTl~lfk~G~~v~-~  102 (120)
T cd03065          28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKLGLDEEDSIYVFKDDEVIE-Y  102 (120)
T ss_pred             ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHcCCccccEEEEEECCEEEE-e
Confidence            356666655 554  597          23445556689999999997754    6667888999998  67998664 4


Q ss_pred             HHHHHhhhcCchHHHHHHh
Q 039225          228 VALNSLRNSGTFDERFREM  246 (327)
Q Consensus       228 deL~~L~esGeL~~~Lk~~  246 (327)
                      ...+   ....|.++|+.+
T Consensus       103 ~G~~---~~~~l~~~l~~~  118 (120)
T cd03065         103 DGEF---AADTLVEFLLDL  118 (120)
T ss_pred             eCCC---CHHHHHHHHHHH
Confidence            3322   223455565543

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=96.12  E-value=0.013  Score=48.98  Aligned_cols=58  Identities=16%  Similarity=0.386  Sum_probs=38.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHH------cCCceEEEEcCCChhHHHHHHHHhCCC--CccEEE-e--CCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ------RGLKFVEINVDVFPPREKELIRRTGSS--QVPQVF-L--NDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e------lgV~y~eiDVd~d~e~~~eL~~ltG~~--tVPqIF-I--nGe~IG  225 (327)
                      ++.|+.+||++|+.....+.+      .+..|..+|++.+.+...   +..+..  .+|+++ +  +|+.++
T Consensus        23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~f~~~~Gk~~~   91 (117)
T cd02959          23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRILFLDPSGDVHP   91 (117)
T ss_pred             EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEEEECCCCCCch
Confidence            555889999999999877766      344688889987653221   122332  489885 4  566544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins

Probab=96.11  E-value=0.0063  Score=49.00  Aligned_cols=48  Identities=23%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             HHHHHHHHhccCcccccc-ccceeccCCcchhHHHHHHHhccc-cChhhh
Q 039225          276 MLLSVKLLRQRLPIQDRL-IKLKIVKNCFSGSEMVDVLTHHFK-CDRMKV  323 (327)
Q Consensus       276 la~lV~~l~~~~~Ikdr~-~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~A  323 (327)
                      +.+|+.+|-+...+.+|+ --+-.|.|||+|+|+|+||+++-. .+++.|
T Consensus         2 lk~lL~~ml~~ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~~~~s~~~a   51 (84)
T cd04436           2 LKELLAAMLKEIPLADYKVPILGTYQNTSSGSEIVSWLQENMPEKDLDAA   51 (84)
T ss_pred             HHHHHHHHHHhCCCccceecccccccCcccHHHHHHHHHHcCCCCCHHHH
Confidence            567888887776666655 456689999999999999999987 555544

Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.

>TIGR02740 TraF-like TraF-like protein

Probab=96.07  E-value=0.0069  Score=57.95  Aligned_cols=57  Identities=25%  Similarity=0.472  Sum_probs=40.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCChh-------HHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVFPP-------REKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d~e-------~~~eL~~ltG~~tVPqIFI  219 (327)
                      ..++.|+.+||++|+....+|+    ++|+.+..++++....       .-..+.+..|...+|.+|+
T Consensus       168 ~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L  235 (271)
T TIGR02740       168 SGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL  235 (271)
T ss_pred             eEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence            4566688999999998877765    4577777778775321       0123556678999999974

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=96.05  E-value=0.017  Score=46.25  Aligned_cols=51  Identities=14%  Similarity=0.399  Sum_probs=35.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      ++.|+.+||+.|++....|+++       +  +.+..+|++..+    .+.+..+..++|++++
T Consensus        19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~I~~~Pt~~l   78 (104)
T cd03000          19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS----SIASEFGVRGYPTIKL   78 (104)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH----hHHhhcCCccccEEEE
Confidence            5558889999999887666542       2  344556666544    3555678889999843

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.03  E-value=0.013  Score=45.96  Aligned_cols=60  Identities=13%  Similarity=0.208  Sum_probs=39.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF  224 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I  224 (327)
                      .-++.|+.+||++|++....+.+.        ++.+..+|++.+  ....+....|..++|+++  -+|+.+
T Consensus        19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~i~~~Pt~~~~~~g~~~   88 (104)
T cd02997          19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYNVKGFPTFKYFENGKFV   88 (104)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCCCccccEEEEEeCCCee
Confidence            346779999999999987555432        245666777752  123455566888899874  355533

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=96.03  E-value=0.018  Score=44.90  Aligned_cols=53  Identities=15%  Similarity=0.337  Sum_probs=36.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc----C----CceEEEEcCC-ChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR----G----LKFVEINVDV-FPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el----g----V~y~eiDVd~-d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||+.|++....+.+.    .    +.+..+|.+. .+    .+.+..+..++|.+++
T Consensus        20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~i~~~P~~~~   81 (105)
T cd02998          20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYGVSGFPTLKF   81 (105)
T ss_pred             cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCCCCCcCEEEE
Confidence            347779999999999887777542    2    4455666665 33    3555567889999864

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.00  E-value=0.014  Score=49.59  Aligned_cols=55  Identities=18%  Similarity=0.297  Sum_probs=37.7

Q ss_pred             EEEEEc-------CCChhHHHHHHHHH----Hc--CCceEEEEcCCChh---HHHHHHHHhCCC-CccEEEe
Q 039225          165 ISFFSR-------SNCRDCTAVRRFFK----QR--GLKFVEINVDVFPP---REKELIRRTGSS-QVPQVFL  219 (327)
Q Consensus       165 VvLYsk-------~~Cp~C~~ak~iL~----el--gV~y~eiDVd~d~e---~~~eL~~ltG~~-tVPqIFI  219 (327)
                      |+.|+.       +||+.|+.+..+|+    ++  ++.|..+|++..+.   ...++....+.. ++|++++
T Consensus        25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~   96 (119)
T cd02952          25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR   96 (119)
T ss_pred             EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence            555788       89999998876664    33  36788888876431   123555555666 8999864

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PLN02378 glutathione S-transferase DHAR1

Probab=95.96  E-value=0.02  Score=51.93  Aligned_cols=62  Identities=10%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ..||+|.+|+-+|.+.|++|+.+.|+... ...++.+++-..+||++..||..|.....|...
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~Y   79 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGI   79 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            45999999999999999999877776532 223577788889999999998877666655544

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=95.95  E-value=0.022  Score=51.89  Aligned_cols=58  Identities=14%  Similarity=0.307  Sum_probs=42.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVA  229 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~de  229 (327)
                      |+-|+.+||+.|+.+...|+.+     .+.|..+|++.       ....++...+|+|  |.||+.++-+..
T Consensus       106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~~~~i~~lPTlliyk~G~~v~~ivG  170 (192)
T cd02988         106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIPNYPDKNLPTILVYRNGDIVKQFIG  170 (192)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHhhCCCCCCCEEEEEECCEEEEEEeC
Confidence            4448889999999999888766     35677777762       1345688899988  568986654433

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=95.91  E-value=0.016  Score=51.53  Aligned_cols=68  Identities=15%  Similarity=0.249  Sum_probs=54.4

Q ss_pred             EEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          167 FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       167 LYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ||....|++|.+++-+|.++|++|+.+.++..   .....++.+++-..+||.+..||..+.....|....
T Consensus         2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl   72 (210)
T TIGR01262         2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYL   72 (210)
T ss_pred             cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHH
Confidence            78888899999999999999999998888741   222346777788899999999998887777665543

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=95.88  E-value=0.032  Score=47.31  Aligned_cols=55  Identities=18%  Similarity=0.315  Sum_probs=40.8

Q ss_pred             EEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      +-|+.+||+.|+.+-.+|.++.      +.+-.+|+++-++    +.+.++....|+.  |.||+|+
T Consensus        19 VdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d----va~~y~I~amPtfvffkngkh~   81 (114)
T cd02986          19 LRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV----YTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             EEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH----HHHhcCceeCcEEEEEECCcEE
Confidence            3399999999999988888763      4566778886655    4455666667765  6789987

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=95.85  E-value=0.029  Score=51.05  Aligned_cols=58  Identities=17%  Similarity=0.321  Sum_probs=41.1

Q ss_pred             EEEEEcCCChhHHHH----HHHHHHcCCceEEEEcCCCh-----h----HHHHHHHHhCC--CCccEEEe---CCE
Q 039225          165 ISFFSRSNCRDCTAV----RRFFKQRGLKFVEINVDVFP-----P----REKELIRRTGS--SQVPQVFL---NDK  222 (327)
Q Consensus       165 VvLYsk~~Cp~C~~a----k~iL~elgV~y~eiDVd~d~-----e----~~~eL~~ltG~--~tVPqIFI---nGe  222 (327)
                      +++|+.+|||+|++.    +++-+++|+.+.-++++...     -    -...+.+.+|.  ..+|..|+   +|+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            889999999999998    55556678888777777541     1    12345555663  68999875   564

>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.039  Score=52.12  Aligned_cols=71  Identities=15%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +.|.||+.-.|||..+++-.|+..||+|+.++++... .-+-|.+.. -+..||++..||+.|+-.-.+.+..
T Consensus         8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYi   79 (231)
T KOG0406|consen    8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYI   79 (231)
T ss_pred             CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHH
Confidence            5699999999999999999999999999988887643 122344444 5688999999999987766665543

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=95.73  E-value=0.024  Score=48.31  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=41.3

Q ss_pred             cEEE-EEcCCChhHHHHHH-HHHH------c--CCceEEEEcCCChhHHHHHH----HHhCCCCccEEEe---CCEEeec
Q 039225          164 RISF-FSRSNCRDCTAVRR-FFKQ------R--GLKFVEINVDVFPPREKELI----RRTGSSQVPQVFL---NDKLFGG  226 (327)
Q Consensus       164 kVvL-Ysk~~Cp~C~~ak~-iL~e------l--gV~y~eiDVd~d~e~~~eL~----~ltG~~tVPqIFI---nGe~IGG  226 (327)
                      +|+| |+..||++|+.+.+ .|..      +  +.-+..+|++..++..+.+.    .++|...+|.+++   +|+.+.+
T Consensus        17 pVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~   96 (124)
T cd02955          17 PIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFG   96 (124)
T ss_pred             eEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEee
Confidence            3554 77899999998854 3332      2  34456677776666544332    2457888999865   6777754


Q ss_pred             hH
Q 039225          227 LV  228 (327)
Q Consensus       227 ~d  228 (327)
                      ..
T Consensus        97 ~~   98 (124)
T cd02955          97 GT   98 (124)
T ss_pred             ee
Confidence            43

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=95.71  E-value=0.0057  Score=52.38  Aligned_cols=62  Identities=16%  Similarity=0.282  Sum_probs=36.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe---CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL---NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI---nGe~IG  225 (327)
                      .+|++++-+|||+|....-+|.+.     ++++..+-.+.+.++.+.+.. .|.+++|+++|   +|+.+|
T Consensus        43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~~d~~~~~lg  112 (129)
T PF14595_consen   43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIFLDKDGKELG  112 (129)
T ss_dssp             EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEEE-TT--EEE
T ss_pred             cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEEEcCCCCEeE
Confidence            479999999999999887666543     566766666655555444443 67899999965   345444

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.63  E-value=0.051  Score=50.76  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc---CCceEEE--EcC-CChh-----------------------------------
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR---GLKFVEI--NVD-VFPP-----------------------------------  200 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~ei--DVd-~d~e-----------------------------------  200 (327)
                      +..|++|+-+.||||+++...|.++   ++.+..+  .+. .++.                                   
T Consensus       108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~  187 (232)
T PRK10877        108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVD  187 (232)
T ss_pred             CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccch
Confidence            4569999999999999998888775   3544333  221 1110                                   


Q ss_pred             --HHHHHHHHhCCCCccEEEe-CCEEeechHHHH
Q 039225          201 --REKELIRRTGSSQVPQVFL-NDKLFGGLVALN  231 (327)
Q Consensus       201 --~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~  231 (327)
                        ...++.+..|...+|.|++ ||+.+.|+....
T Consensus       188 v~~~~~la~~lgi~gTPtiv~~~G~~~~G~~~~~  221 (232)
T PRK10877        188 IADHYALGVQFGVQGTPAIVLSNGTLVPGYQGPK  221 (232)
T ss_pred             HHHhHHHHHHcCCccccEEEEcCCeEeeCCCCHH
Confidence              0011222246788999998 999999975443

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=95.56  E-value=0.036  Score=52.82  Aligned_cols=63  Identities=17%  Similarity=0.271  Sum_probs=49.0

Q ss_pred             cCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          170 RSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       170 k~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ...||+|.+++-+|.++|++|+.+.|+... ..+++.+++-..+||++..+|..+.....|.+.
T Consensus        70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~Y  132 (265)
T PLN02817         70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQA  132 (265)
T ss_pred             CCCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHH
Confidence            345999999999999999999987776532 234566777778999999999877766665554

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=95.51  E-value=0.035  Score=43.30  Aligned_cols=52  Identities=10%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcC--------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRG--------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elg--------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||++|+.....|.+..        +.+..+|.+..     ++....+..++|++++
T Consensus        20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~~~~Pt~~~   79 (104)
T cd02995          20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFVVDGFPTILF   79 (104)
T ss_pred             cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhccCCCCCEEEE
Confidence            3466789999999999887775442        44556666643     2333345588998854

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=95.41  E-value=0.036  Score=48.55  Aligned_cols=54  Identities=9%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCC-CccEE-Ee-CCE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSS-QVPQV-FL-NDK  222 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~-tVPqI-FI-nGe  222 (327)
                      |+-|+.+||+.|+.+-.+|.++.      +.+-.+||++.++    +...++.. ..|.+ |+ ||+
T Consensus        27 VvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d----la~~y~I~~~~t~~~ffk~g~   89 (142)
T PLN00410         27 VIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD----FNTMYELYDPCTVMFFFRNKH   89 (142)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH----HHHHcCccCCCcEEEEEECCe
Confidence            34499999999999998887663      3457788887765    44445555 44566 44 555

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=95.37  E-value=0.04  Score=45.46  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=36.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcC---------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRG---------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elg---------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||+.|+.....|++..         +.+..+|.+.+.  ..++.+..+...+|++++
T Consensus        22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l   84 (114)
T cd02992          22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY   84 (114)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence            456688999999999887775432         334455544322  235666678899998854

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PF13728 TraF: F plasmid transfer operon protein

Probab=95.20  E-value=0.022  Score=52.78  Aligned_cols=58  Identities=26%  Similarity=0.520  Sum_probs=43.6

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCC-----hh--HHHHHHHHhCCCCccEEEe
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVF-----PP--REKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d-----~e--~~~eL~~ltG~~tVPqIFI  219 (327)
                      ...+++|+.++|++|.....+|+    ++|+.+..|++|..     +.  .-..+.+..|...+|.+|+
T Consensus       121 ~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L  189 (215)
T PF13728_consen  121 KYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL  189 (215)
T ss_pred             CeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence            45789999999999998877764    56888888888742     11  1234556678899999986

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=95.19  E-value=0.095  Score=40.36  Aligned_cols=68  Identities=16%  Similarity=0.127  Sum_probs=48.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHH--HhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIR--RTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~--ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .++|..+..+-|.+++-+|.+.|++|+.+.++..++.. ++..  ..-..+||.+.+||..+....-+...
T Consensus         2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y   71 (79)
T cd03077           2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNY   71 (79)
T ss_pred             CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            56899888889999999999999999988887533221 1111  11246899999999877666555543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>PLN02395 glutathione S-transferase

Probab=95.07  E-value=0.097  Score=46.72  Aligned_cols=70  Identities=13%  Similarity=0.141  Sum_probs=53.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .++||...+| .+.+++-+|.++|++|+.+.|+..  .....++.+++-..+||++..+|..+.....|.+..
T Consensus         2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL   73 (215)
T PLN02395          2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYY   73 (215)
T ss_pred             eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            4789987765 489999999999999998887653  223356777888899999998887777776665543

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=94.98  E-value=0.11  Score=42.96  Aligned_cols=60  Identities=22%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChh--------------------HHHHHHHHhCCCCcc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPP--------------------REKELIRRTGSSQVP  215 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e--------------------~~~eL~~ltG~~tVP  215 (327)
                      ++.|+.+||+.|++....|.+.         ++.+..++++.+.+                    ....+.+.+|...+|
T Consensus        22 ll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P  101 (131)
T cd03009          22 GLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIP  101 (131)
T ss_pred             EEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCCCCC
Confidence            4457789999999876666432         34555566654432                    123455667888899


Q ss_pred             EEEe---CCEEe
Q 039225          216 QVFL---NDKLF  224 (327)
Q Consensus       216 qIFI---nGe~I  224 (327)
                      .+|+   +|+.+
T Consensus       102 ~~~lid~~G~i~  113 (131)
T cd03009         102 TLIILDADGEVV  113 (131)
T ss_pred             EEEEECCCCCEE
Confidence            8864   45543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.93  E-value=0.072  Score=47.68  Aligned_cols=66  Identities=15%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHHHhCCCCccEEEeCCE-EeechHHHH
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIRRTGSSQVPQVFLNDK-LFGGLVALN  231 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFInGe-~IGG~deL~  231 (327)
                      ++|..+.+|+|.+++-.|.++|++|+.+.|+... ....++..++-...||++..+|- .+-....|.
T Consensus         2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~   69 (211)
T COG0625           2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAIL   69 (211)
T ss_pred             eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHH
Confidence            5788888899999999999999999998888764 45567888888899999998874 444444443

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=94.82  E-value=0.11  Score=39.21  Aligned_cols=57  Identities=19%  Similarity=0.285  Sum_probs=38.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChh-----------------------HHH-----HHHHHhC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPP-----------------------REK-----ELIRRTG  210 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e-----------------------~~~-----eL~~ltG  210 (327)
                      |++|+...||+|..+...|++.      ++.+..+.+.....                       +..     .+....|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            5689999999999999888775      34555555433221                       111     1223357


Q ss_pred             CCCccEEEeCC
Q 039225          211 SSQVPQVFLND  221 (327)
Q Consensus       211 ~~tVPqIFInG  221 (327)
                      ...+|.++++|
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            78999999999

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PTZ00062 glutaredoxin; Provisional

Probab=94.68  E-value=0.15  Score=47.15  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=38.5

Q ss_pred             CcEEE-EEcCCChhHHHHHHHHHHcCC---ceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechH
Q 039225          163 GRISF-FSRSNCRDCTAVRRFFKQRGL---KFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLV  228 (327)
Q Consensus       163 ~kVvL-Ysk~~Cp~C~~ak~iL~elgV---~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~d  228 (327)
                      +.+++ |+.+||+.|+.+...|.++--   .+..+.|+.+          ++...||.+  |-||+.|+.++
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g~~i~r~~   79 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNSQLINSLE   79 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECCEEEeeee
Confidence            44555 447999999999999887743   2444445433          677889976  45888877554

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=94.68  E-value=0.14  Score=42.67  Aligned_cols=60  Identities=18%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChh---------------------HHHHHHHHhCCCCc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPP---------------------REKELIRRTGSSQV  214 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e---------------------~~~eL~~ltG~~tV  214 (327)
                      ++.|+.+||+.|+.....|+++         ++.+..++++...+                     ....+.+.+|...+
T Consensus        21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~i  100 (132)
T cd02964          21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGI  100 (132)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCCC
Confidence            3447789999999876665432         34555566665431                     22355566677888


Q ss_pred             cEEE-eC--CEEe
Q 039225          215 PQVF-LN--DKLF  224 (327)
Q Consensus       215 PqIF-In--Ge~I  224 (327)
                      |.++ ||  |+.+
T Consensus       101 Pt~~lid~~G~iv  113 (132)
T cd02964         101 PTLVVLKPDGDVV  113 (132)
T ss_pred             CEEEEECCCCCEE
Confidence            9887 54  5544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=94.46  E-value=0.2  Score=46.39  Aligned_cols=64  Identities=25%  Similarity=0.469  Sum_probs=37.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC----CceEEEEcC-------CCh-------hHHHHHHHHhCC--CCccEEEeCCE-E
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG----LKFVEINVD-------VFP-------PREKELIRRTGS--SQVPQVFLNDK-L  223 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDVd-------~d~-------e~~~eL~~ltG~--~tVPqIFInGe-~  223 (327)
                      |.||+..+|+.|--|-++|.++.    |-.--+.|+       +|+       +.+..+.+..|.  ...||++|||. +
T Consensus         2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~   81 (202)
T PF06764_consen    2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH   81 (202)
T ss_dssp             EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred             eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence            78999999999999999998763    221112221       122       355556665554  45699999996 6


Q ss_pred             eechH
Q 039225          224 FGGLV  228 (327)
Q Consensus       224 IGG~d  228 (327)
                      .+|.+
T Consensus        82 ~~g~~   86 (202)
T PF06764_consen   82 RVGSD   86 (202)
T ss_dssp             EETT-
T ss_pred             eeccC
Confidence            67775

The function of this family is unknown.; PDB: 2AXO_A.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=94.44  E-value=0.29  Score=42.96  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=16.1

Q ss_pred             EEEEcCCChhHHHHHHHHHH
Q 039225          166 SFFSRSNCRDCTAVRRFFKQ  185 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~e  185 (327)
                      +-|+.+|||.|++....|.+
T Consensus        30 L~FwAsWCppCr~e~P~L~~   49 (146)
T cd03008          30 LFFGAVVSPQCQLFAPKLKD   49 (146)
T ss_pred             EEEECCCChhHHHHHHHHHH
Confidence            33778999999998877754

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK10357 putative glutathione S-transferase; Provisional

Probab=94.39  E-value=0.12  Score=45.87  Aligned_cols=64  Identities=8%  Similarity=0.148  Sum_probs=48.2

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHH
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVAL  230 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL  230 (327)
                      ++|....|+++++++-+|..+|++|+.++++.... ..++.+++...+||++.. +|..+-....|
T Consensus         2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI   66 (202)
T PRK10357          2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPII   66 (202)
T ss_pred             eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHH
Confidence            58999999999999999999999999988875321 234555677889999985 56544444433

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=94.15  E-value=0.18  Score=44.44  Aligned_cols=70  Identities=21%  Similarity=0.367  Sum_probs=53.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC----CCCccEEEeCCEEeech---HHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG----SSQVPQVFLNDKLFGGL---VALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG----~~tVPqIFInGe~IGG~---deL~~L~e  235 (327)
                      -.+++|..++|.=|..-.+.|+..|+++.....+....    +++..|    ..+.=+..|||.+|-|.   +++..|.+
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~a----lK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~  101 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLA----LKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLA  101 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHH----HHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHh
Confidence            45889999999999999999999999998888774333    444444    35777999999999886   34544444


Q ss_pred             c
Q 039225          236 S  236 (327)
Q Consensus       236 s  236 (327)
                      +
T Consensus       102 ~  102 (149)
T COG3019         102 E  102 (149)
T ss_pred             C
Confidence            3

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=94.07  E-value=0.19  Score=44.22  Aligned_cols=57  Identities=23%  Similarity=0.308  Sum_probs=38.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCChh---------HHHHHHHHh---CCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVFPP---------REKELIRRT---GSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d~e---------~~~eL~~lt---G~~tVPqIFI  219 (327)
                      ..++.|+.+||++|++..-.|+    ++++.+.-++++....         ....+...+   |...+|+.|+
T Consensus        52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        52 YALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             CEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            4588899999999998877765    4567777777765320         011223344   5678899874

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.03  E-value=0.23  Score=44.55  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=24.7

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHH--cCCceEEE
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQ--RGLKFVEI  193 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~e--lgV~y~ei  193 (327)
                      .+..|++|+-+.||||+++...+.+  .++.+..+
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~  111 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIF  111 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEE
Confidence            3457999999999999999988874  34444333

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins

Probab=94.01  E-value=0.066  Score=42.85  Aligned_cols=50  Identities=20%  Similarity=0.320  Sum_probs=40.6

Q ss_pred             HHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhh
Q 039225          276 MLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRF  325 (327)
Q Consensus       276 la~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~  325 (327)
                      +..++..+++....++|...=..|++.|+|+|+|+-|..--. .+|.=|+.
T Consensus         2 LS~VA~~fr~~I~~~~~~K~gl~Y~~aFtG~~aV~~i~~ii~t~DRnlALl   52 (82)
T cd04435           2 LSRVALQLRDKIPLGDHTKDGITYRNSFTGKDAVTTIQGIIRTSDRNLALL   52 (82)
T ss_pred             hHHHHHHHHHhccccccccCCeecCcccCcHHHHHHHHHHHhcccHHHHHH
Confidence            456788889998999998877889999999999999886554 66666643

Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=93.97  E-value=0.24  Score=44.50  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=49.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-----CCE--EeechHHHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-----NDK--LFGGLVALNS  232 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-----nGe--~IGG~deL~~  232 (327)
                      ++||..+ +++|.+++-+|.++|++|+.++|+..  .....++.+++-...||++..     ||+  .+-...-|.+
T Consensus         2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~   77 (215)
T PRK13972          2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILL   77 (215)
T ss_pred             eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHH
Confidence            5688876 69999999999999999998877643  233456778888899999987     342  3555544444

>PTZ00102 disulphide isomerase; Provisional

Probab=93.95  E-value=0.23  Score=49.79  Aligned_cols=53  Identities=11%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcC--------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRG--------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elg--------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||++|++....|.+..        +.+..+|.+.+..    +....+.+.+|++++
T Consensus       377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~----~~~~~~v~~~Pt~~~  437 (477)
T PTZ00102        377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET----PLEEFSWSAFPTILF  437 (477)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc----chhcCCCcccCeEEE
Confidence            3466688899999999988886542        3455667665443    233456778898853

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=93.89  E-value=0.32  Score=37.10  Aligned_cols=67  Identities=12%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCC-CCccEEEeC-CEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGS-SQVPQVFLN-DKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~-~tVPqIFIn-Ge~IGG~deL~~L  233 (327)
                      +.+|..++  .|..++-+|...|++|+.+.++.  .....+++.+..-. ..+|.+..+ |..+-....|...
T Consensus         3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~Y   73 (76)
T PF02798_consen    3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRY   73 (76)
T ss_dssp             EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHH
T ss_pred             EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHH
Confidence            56677666  88999999999999998877764  34444777777777 899999999 8888776655543

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=93.88  E-value=0.14  Score=40.16  Aligned_cols=52  Identities=21%  Similarity=0.380  Sum_probs=38.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCC--CccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSS--QVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~--tVPqIFI  219 (327)
                      -+++|+.+||+.|..++..|++..      +.|..+|++..+.    +.+..|..  ++|++.+
T Consensus        15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~   74 (103)
T cd02982          15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAI   74 (103)
T ss_pred             EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEE
Confidence            467788899999999999987642      4566777765433    55556776  8999965

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=93.73  E-value=0.37  Score=45.11  Aligned_cols=59  Identities=12%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             CCChhHHHHHHHHHHcCCce--EEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          171 SNCRDCTAVRRFFKQRGLKF--VEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y--~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      ..||+|+++-..|...+++|  +.+|+..-++   .++.++....+|.|-+||+.+-..+.|.+
T Consensus        19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~   79 (221)
T KOG1422|consen   19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEE   79 (221)
T ss_pred             CCChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHH
Confidence            46999999999999999886  5566665554   67888999999999999998877776543

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=93.56  E-value=0.26  Score=37.85  Aligned_cols=57  Identities=18%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      +.+|+|-++..+|+-.|++|+.+... ++.       .+....+|.|..+|+.|+|+..+.+..+
T Consensus        14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~   70 (73)
T cd03078          14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSPTGKLPALLTSGTKISGPEKIIEYLR   70 (73)
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence            35799999999999999999765333 222       2234569999999999999998887543

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=93.42  E-value=0.22  Score=51.50  Aligned_cols=56  Identities=13%  Similarity=0.192  Sum_probs=38.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LND  221 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InG  221 (327)
                      -++.|+.+||++|+.+...|.++       ++.+..+|++.+..  ......++..++|+|+  .+|
T Consensus       374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g  438 (463)
T TIGR00424       374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKH  438 (463)
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECC
Confidence            36669999999999998887554       35677788886532  1223446778899884  455

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=93.35  E-value=0.18  Score=38.88  Aligned_cols=51  Identities=22%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             cEEEEEcCCChhHHHHHHHH-HH--------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFF-KQ--------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL-~e--------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||++|+...+.+ ..        .++-+..+|++.... ...+..    ..+|.++|
T Consensus        20 vlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~-~~~~~~----~~~P~~~~   79 (82)
T PF13899_consen   20 VLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP-NAQFDR----QGYPTFFF   79 (82)
T ss_dssp             EEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH-HHHHHH----CSSSEEEE
T ss_pred             EEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh-hHHhCC----ccCCEEEE
Confidence            35567889999999987665 21        233445556543222 112222    33899875

...

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=93.27  E-value=0.2  Score=39.13  Aligned_cols=57  Identities=18%  Similarity=0.219  Sum_probs=43.2

Q ss_pred             CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          171 SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +..+.|.++..+|+..|++|+.+++.....       ......||.|.+||+.|++..-+..+.
T Consensus        15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL   71 (74)
T cd03079          15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFV   71 (74)
T ss_pred             CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence            356788999999999999999886542111       122367999999999999988776654

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>PRK11752 putative S-transferase; Provisional

Probab=93.00  E-value=0.55  Score=44.29  Aligned_cols=71  Identities=10%  Similarity=0.062  Sum_probs=52.1

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCC----EEeechH
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLND----KLFGGLV  228 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInG----e~IGG~d  228 (327)
                      ..+.++||+.+ +++|.+++-+|.++      |++|+.+.|+.  ......++.++.-..+||++..++    ..+....
T Consensus        41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~  119 (264)
T PRK11752         41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG  119 (264)
T ss_pred             CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence            44579999964 99999999999997      88888766653  233445677787788999998753    4555555


Q ss_pred             HHHH
Q 039225          229 ALNS  232 (327)
Q Consensus       229 eL~~  232 (327)
                      .|..
T Consensus       120 AIl~  123 (264)
T PRK11752        120 AILL  123 (264)
T ss_pred             HHHH
Confidence            5554

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=92.85  E-value=0.3  Score=51.40  Aligned_cols=55  Identities=11%  Similarity=0.336  Sum_probs=39.3

Q ss_pred             EEEEEcCCChhHHHHHHH-H------HH-cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          165 ISFFSRSNCRDCTAVRRF-F------KQ-RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~i-L------~e-lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      ++.|+.+||+.|+..+.. +      +. .++.+..+|++.+.+..+++.+..|...+|++++
T Consensus       478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~  540 (571)
T PRK00293        478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILF  540 (571)
T ss_pred             EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEE
Confidence            445888999999987654 2      12 2456777888876544456777789999999864

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=92.77  E-value=0.61  Score=38.60  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=19.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHH
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQ  185 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~e  185 (327)
                      +..|++|+-.+||+|.+....+.+
T Consensus         6 ~~~i~~f~D~~Cp~C~~~~~~l~~   29 (154)
T cd03023           6 DVTIVEFFDYNCGYCKKLAPELEK   29 (154)
T ss_pred             CEEEEEEECCCChhHHHhhHHHHH
Confidence            456888999999999998766655

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PLN02309 5'-adenylylsulfate reductase

Probab=92.68  E-value=0.26  Score=50.82  Aligned_cols=54  Identities=15%  Similarity=0.250  Sum_probs=37.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcC-CChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVD-VFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd-~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||++|+.+...|.++       ++.+-.+|++ .+.++   ..+..+..++|+|++
T Consensus       367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~  428 (457)
T PLN02309        367 PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILL  428 (457)
T ss_pred             eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEE
Confidence            457779999999999998887654       3556667766 32221   223467788999843

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=92.57  E-value=0.13  Score=41.64  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=18.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR  186 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el  186 (327)
                      .-|+.|+.+||+.|......|..+
T Consensus        22 ~~vl~F~~~~C~~C~~~~~~l~~~   45 (123)
T cd03011          22 PVLVYFWATWCPVCRFTSPTVNQL   45 (123)
T ss_pred             EEEEEEECCcChhhhhhChHHHHH
Confidence            346678889999999987666654

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=92.47  E-value=0.53  Score=37.57  Aligned_cols=55  Identities=15%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcC----CceEEEEc-CCChhHHHHHHHHhCCCCccEEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRG----LKFVEINV-DVFPPREKELIRRTGSSQVPQVF  218 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDV-d~d~e~~~eL~~ltG~~tVPqIF  218 (327)
                      -|+.|+.+||+.|++....|+++.    -.+..+-+ +.+.+..+.+.+..+...+|.++
T Consensus        24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~   83 (114)
T cd02967          24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVL   83 (114)
T ss_pred             EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEe
Confidence            356688899999998877775532    12222222 22333333444445555677664

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=92.35  E-value=0.77  Score=37.57  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=23.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVD  196 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd  196 (327)
                      -|+.|+.+||+.|.+....|+++    ++.+..++++
T Consensus        28 vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~   64 (127)
T cd03010          28 YLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYK   64 (127)
T ss_pred             EEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence            36668889999999887777554    3555555544

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=92.30  E-value=0.68  Score=41.52  Aligned_cols=33  Identities=15%  Similarity=0.352  Sum_probs=22.5

Q ss_pred             cEEEEEcCCChhHHHHHHHH----HHcCCceEEEEcC
Q 039225          164 RISFFSRSNCRDCTAVRRFF----KQRGLKFVEINVD  196 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL----~elgV~y~eiDVd  196 (327)
                      -|+.|+.+|||.|++....+    ++.++.+.-+..+
T Consensus        77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~  113 (189)
T TIGR02661        77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDG  113 (189)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            46668889999999875544    4446666666543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.20  E-value=0.15  Score=46.88  Aligned_cols=67  Identities=15%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      .+|...-||||.+|+-++.-++++++..-+..|.+..  =.++.|...||.+.- +|++.+..-|+....
T Consensus         2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T--p~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~   69 (215)
T COG2999           2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET--PIRMIGQKQVPILQKEDGRAMPESLDIVHYV   69 (215)
T ss_pred             ceeEeccChHHHHHHHHhhccCCChhhheeccCcccC--hhhhhcccccceEEccccccchhhhHHHHHH
Confidence            3788899999999999999999999877776654422  223569999999975 578888776766543

>PTZ00057 glutathione s-transferase; Provisional

Probab=92.18  E-value=0.69  Score=41.44  Aligned_cols=70  Identities=16%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh-H--HHHHH--HHhCCCCccEEEeCCEEeechHHHHH
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP-R--EKELI--RRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e-~--~~eL~--~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      .+++||+.+..+.|..++-+|...|++|+.+.++...+ .  .+++.  ..+-...||.+.+||..+....-+..
T Consensus         3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~   77 (205)
T PTZ00057          3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR   77 (205)
T ss_pred             CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence            34889998888899999999999999999998854221 1  11112  24567899999999987776665554

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=92.11  E-value=0.43  Score=44.90  Aligned_cols=69  Identities=19%  Similarity=0.387  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCc--eEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee----chHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLK--FVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG----GLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~--y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG----G~deL~~L~  234 (327)
                      ...|.||+.-+|-.|...-+.|++.|+-  ++.+|-...+..  .+  ..+.-+||.||+||+.+-    ..+++..+.
T Consensus        10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~--~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~   84 (265)
T COG5494          10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AF--EKGVISVPSVFIDGELVYADPVDPEEIESIL   84 (265)
T ss_pred             heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hh--hcceeecceEEEcCeEEEcCCCCHHHHHHHH
Confidence            4579999999999999999999999874  666776654432  22  236789999999999773    345666553

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=92.05  E-value=0.4  Score=47.30  Aligned_cols=56  Identities=18%  Similarity=0.367  Sum_probs=39.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH-------cC--CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ-------RG--LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKL  223 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e-------lg--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~  223 (327)
                      -++.|+.+||++|++....+.+       .+  +.+..+|.+.+.    ++.+..|..++|+++  -+|+.
T Consensus        21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~   87 (462)
T TIGR01130        21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGVSGYPTLKIFRNGED   87 (462)
T ss_pred             EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCCccccEEEEEeCCcc
Confidence            3677999999999988755542       33  566777777553    455667888999884  45654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=92.05  E-value=0.74  Score=35.25  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF  198 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d  198 (327)
                      -++.|+.+||+.|.+....|.++       ++.+..++++.+
T Consensus        22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~   63 (116)
T cd02966          22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD   63 (116)
T ss_pred             EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence            46678889999999776555433       456777777764

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PTZ00102 disulphide isomerase; Provisional

Probab=91.89  E-value=0.41  Score=47.95  Aligned_cols=56  Identities=14%  Similarity=0.239  Sum_probs=38.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH-------c--CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ-------R--GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK  222 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e-------l--gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe  222 (327)
                      .-++.|+.+||++|++....+.+       .  ++.+..+|.+.+.    ++.+..|..++|+++  -+|+
T Consensus        51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~  117 (477)
T PTZ00102         51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM----ELAQEFGVRGYPTIKFFNKGN  117 (477)
T ss_pred             cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH----HHHHhcCCCcccEEEEEECCc
Confidence            45777999999999988654432       2  2556677776554    355566788899884  3554

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=91.84  E-value=0.98  Score=34.94  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=16.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR  186 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el  186 (327)
                      ++.|+.+||+.|.+....|.++
T Consensus         5 ll~fwa~~c~~c~~~~~~l~~l   26 (95)
T PF13905_consen    5 LLYFWASWCPPCKKELPKLKEL   26 (95)
T ss_dssp             EEEEE-TTSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
Confidence            5668889999999987777543

...

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=91.41  E-value=0.69  Score=39.67  Aligned_cols=35  Identities=20%  Similarity=0.439  Sum_probs=23.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF  198 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d  198 (327)
                      -++.|+.+||++|++....|.+.       ++.+..++.+..
T Consensus        64 ~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~  105 (173)
T PRK03147         64 VFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET  105 (173)
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            45667889999999865555322       355666666544

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=90.91  E-value=1.6  Score=37.51  Aligned_cols=54  Identities=17%  Similarity=0.380  Sum_probs=35.8

Q ss_pred             HHHHHHHHHcCCceEEEEcCCChh-------HHHHHHHHhCCCCccEEEeCCEEe--echHHHH
Q 039225          177 TAVRRFFKQRGLKFVEINVDVFPP-------REKELIRRTGSSQVPQVFLNDKLF--GGLVALN  231 (327)
Q Consensus       177 ~~ak~iL~elgV~y~eiDVd~d~e-------~~~eL~~ltG~~tVPqIFInGe~I--GG~deL~  231 (327)
                      ..+.++|++.|+.+..+|+.++|.       +.+ +.+..|...+|.++|||+.+  |.+=...
T Consensus        30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~-~L~~~G~e~LPitlVdGeiv~~G~YPt~e   92 (123)
T PF06953_consen   30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQ-LLQTEGAEALPITLVDGEIVKTGRYPTNE   92 (123)
T ss_dssp             HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHH-HHHHH-GGG-SEEEETTEEEEESS---HH
T ss_pred             HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHH-HHHHcCcccCCEEEECCEEEEecCCCCHH
Confidence            466788999999999999999864       333 33346889999999999966  6554433

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=90.84  E-value=0.99  Score=40.18  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=26.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH---cCCceEEEEcCCChh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ---RGLKFVEINVDVFPP  200 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e---lgV~y~eiDVd~d~e  200 (327)
                      -|+.|+.+||+.|++....|.+   .++.+.-++++.+.+
T Consensus        71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~  110 (185)
T PRK15412         71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQ  110 (185)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence            3555888999999987666554   467777777665443

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=90.74  E-value=1.2  Score=39.04  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=24.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDV  197 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~  197 (327)
                      -++.|+.+||+.|++....|+++   ++.+.-++++.
T Consensus        66 vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~  102 (173)
T TIGR00385        66 VLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKD  102 (173)
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            35557889999999886666544   66666666643

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.56  E-value=0.84  Score=41.26  Aligned_cols=63  Identities=14%  Similarity=0.248  Sum_probs=41.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH------c---CCceEEEEcCCC------------hhHHHHHHHHhCCCCccEEEe-C
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ------R---GLKFVEINVDVF------------PPREKELIRRTGSSQVPQVFL-N  220 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e------l---gV~y~eiDVd~d------------~e~~~eL~~ltG~~tVPqIFI-n  220 (327)
                      --+.||..++|+||.+.|+-+..      +   ++.+.++++...            ....++|.+..+.++.|.+++ +
T Consensus        44 ylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfd  123 (182)
T COG2143          44 YLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFD  123 (182)
T ss_pred             EEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEc
Confidence            34788999999999998765532      1   122344555332            123458888899999999865 3


Q ss_pred             --CEEee
Q 039225          221 --DKLFG  225 (327)
Q Consensus       221 --Ge~IG  225 (327)
                        |+.|+
T Consensus       124 k~Gk~Il  130 (182)
T COG2143         124 KTGKTIL  130 (182)
T ss_pred             CCCCEEE
Confidence              45555

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=90.47  E-value=1.7  Score=33.74  Aligned_cols=67  Identities=13%  Similarity=0.076  Sum_probs=43.6

Q ss_pred             EEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-h-H-HHH-HHHH----hCCCCccEEEeCCEEeechHHHHHh
Q 039225          167 FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-P-R-EKE-LIRR----TGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       167 LYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e-~-~~e-L~~l----tG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +|+...-+.|.+++-+|...|++|+.+.|+... + . ..+ +...    .-..+||.+..||..+.-..-|...
T Consensus         3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y   77 (82)
T cd03075           3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY   77 (82)
T ss_pred             EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence            555555567889999999999999888876532 1 1 112 1111    1346999999888776655555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]

Probab=90.34  E-value=0.63  Score=45.01  Aligned_cols=62  Identities=15%  Similarity=0.299  Sum_probs=49.8

Q ss_pred             CCcEEEEEcC-------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHH
Q 039225          162 KGRISFFSRS-------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALN  231 (327)
Q Consensus       162 ~~kVvLYsk~-------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~  231 (327)
                      +..|-+|.-+       -.|||-++..+|+-.+++|+.++-..        ..++...++|-|-.||++|.+.+-+.
T Consensus        43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rSr~G~lPFIELNGe~iaDS~~I~  111 (281)
T KOG4244|consen   43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRSRNGTLPFIELNGEHIADSDLIE  111 (281)
T ss_pred             cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeeccCCCcceEEeCCeeccccHHHH
Confidence            4556677642       35899999999999999999988773        23566789999999999999988654

>PRK10542 glutathionine S-transferase; Provisional

Probab=89.65  E-value=0.89  Score=39.97  Aligned_cols=67  Identities=21%  Similarity=0.335  Sum_probs=46.7

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      +||+..+ +.+.+++-+|.++|++|+.+.|+...   ...+++.+++-...||++.+ ||..|-....|.+.
T Consensus         2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~Y   72 (201)
T PRK10542          2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQY   72 (201)
T ss_pred             ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHH
Confidence            4666543 34677888999999999888776532   12356777877899999987 66666666555543

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=89.54  E-value=1.8  Score=36.16  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=31.1

Q ss_pred             cEEEEEcC-CChhHHHHHHHHH-------HcCCceEEEEcCCChhHHHHHHH
Q 039225          164 RISFFSRS-NCRDCTAVRRFFK-------QRGLKFVEINVDVFPPREKELIR  207 (327)
Q Consensus       164 kVvLYsk~-~Cp~C~~ak~iL~-------elgV~y~eiDVd~d~e~~~eL~~  207 (327)
                      -|+.|+.+ |||.|......|+       ..++.+.-+..+.++..++.+.+
T Consensus        31 ~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~   82 (146)
T PF08534_consen   31 VVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK   82 (146)
T ss_dssp             EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred             EEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence            35567778 9999997764443       34678888888887776655555

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=89.28  E-value=2.1  Score=36.23  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=41.6

Q ss_pred             CcEEEEEc--CCCh---hHHHHHHHHHHc--CCceEEEEcCCChh-HHHHHHHHhCCC--CccEE--EeCC
Q 039225          163 GRISFFSR--SNCR---DCTAVRRFFKQR--GLKFVEINVDVFPP-REKELIRRTGSS--QVPQV--FLND  221 (327)
Q Consensus       163 ~kVvLYsk--~~Cp---~C~~ak~iL~el--gV~y~eiDVd~d~e-~~~eL~~ltG~~--tVPqI--FInG  221 (327)
                      .-+|.|..  +||.   .|++...-+.+.  .|.+-.+|++...+ ...+|.+.+|..  .+|+|  |.+|
T Consensus        20 ~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g   90 (116)
T cd03007          20 YSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGG   90 (116)
T ss_pred             cEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCC
Confidence            34667888  8998   888887665443  36678888864332 235688888988  89988  5566

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=89.15  E-value=1.2  Score=33.12  Aligned_cols=53  Identities=23%  Similarity=0.392  Sum_probs=32.9

Q ss_pred             EEcCCChhHHHHHHHHHHc------CCceEEEEcC-CChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225          168 FSRSNCRDCTAVRRFFKQR------GLKFVEINVD-VFPPREKELIRRTGSSQVPQVF--LNDK  222 (327)
Q Consensus       168 Ysk~~Cp~C~~ak~iL~el------gV~y~eiDVd-~d~e~~~eL~~ltG~~tVPqIF--InGe  222 (327)
                      |+.+||++|+.+...|.+.      .+.+..+|+. ...+....+..  ....+|.+.  .+|+
T Consensus        39 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~  100 (127)
T COG0526          39 FWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK  100 (127)
T ss_pred             EEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence            3699999999998777654      2567777775 44544444432  134456654  4443

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=89.12  E-value=0.96  Score=43.35  Aligned_cols=58  Identities=21%  Similarity=0.351  Sum_probs=43.2

Q ss_pred             CCcEEEEEcCCChhHHHHHHHH----HHcCCceEEEEcCCC--hh-----HHHHHHHHhCCCCccEEEe
Q 039225          162 KGRISFFSRSNCRDCTAVRRFF----KQRGLKFVEINVDVF--PP-----REKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL----~elgV~y~eiDVd~d--~e-----~~~eL~~ltG~~tVPqIFI  219 (327)
                      +..+++|+++.|++|.+.--+|    +++|+.+.-+++|..  +.     .-..+.+..|...+|.+|+
T Consensus       151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L  219 (256)
T TIGR02739       151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL  219 (256)
T ss_pred             ceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence            4689999999999999987666    567898888888864  11     1123445567889999985

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.64  E-value=0.75  Score=42.41  Aligned_cols=68  Identities=13%  Similarity=0.176  Sum_probs=46.8

Q ss_pred             cEEEE--EcCCChhHHHHHHHHHHcCCceEEEEcCCC-hhHHHHHHHHhCCCCccEEEeCCEEeechHHHH
Q 039225          164 RISFF--SRSNCRDCTAVRRFFKQRGLKFVEINVDVF-PPREKELIRRTGSSQVPQVFLNDKLFGGLVALN  231 (327)
Q Consensus       164 kVvLY--sk~~Cp~C~~ak~iL~elgV~y~eiDVd~d-~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~  231 (327)
                      +-++|  +.++|.+=.++--.|++...+|.-+|+-.. .+.-.+++++.-..+||.+.|||..+-..--+.
T Consensus         5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII   75 (217)
T KOG0868|consen    5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAII   75 (217)
T ss_pred             cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHH
Confidence            34455  468898866666566655556666676554 344557888888889999999998776554443

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=88.35  E-value=1.8  Score=42.76  Aligned_cols=51  Identities=8%  Similarity=0.219  Sum_probs=35.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||+.|+.....+.++         ++.+-.+|++...     +.. .+...+|++++
T Consensus       366 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~~i~~~Pt~~~  425 (462)
T TIGR01130       366 DVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-FEVEGFPTIKF  425 (462)
T ss_pred             eEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-CCccccCEEEE
Confidence            346668899999999887777553         3456677776543     222 46678999865

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=87.22  E-value=2.3  Score=44.68  Aligned_cols=22  Identities=18%  Similarity=0.111  Sum_probs=17.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR  186 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el  186 (327)
                      |+-|+.+||+.|++....|.++
T Consensus        60 vV~FWATWCppCk~emP~L~eL   81 (521)
T PRK14018         60 LIKFWASWCPLCLSELGETEKW   81 (521)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHH
Confidence            5558889999999987777544

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=87.02  E-value=1  Score=36.61  Aligned_cols=58  Identities=7%  Similarity=0.297  Sum_probs=35.6

Q ss_pred             EEE-EEcCCChhHHHHH-HHHHHcCC------ceEE--EEcCCChhHHHHHHHHhCCCCccEEE-e---CCEEe
Q 039225          165 ISF-FSRSNCRDCTAVR-RFFKQRGL------KFVE--INVDVFPPREKELIRRTGSSQVPQVF-L---NDKLF  224 (327)
Q Consensus       165 VvL-Ysk~~Cp~C~~ak-~iL~elgV------~y~e--iDVd~d~e~~~eL~~ltG~~tVPqIF-I---nGe~I  224 (327)
                      ++| +..+||++|+... ..|.+-.|      .|..  +|+.. ++. ..+...++...+|.++ +   +|+.+
T Consensus        20 llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~-~~~~~~~~~~~~P~~~~i~~~~g~~l   91 (114)
T cd02958          20 LLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEG-QRFLQSYKVDKYPHIAIIDPRTGEVL   91 (114)
T ss_pred             EEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccH-HHHHHHhCccCCCeEEEEeCccCcEe
Confidence            444 5568999999874 35543322      2433  45543 233 4577778889999985 4   45544

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.73  E-value=2.3  Score=39.46  Aligned_cols=70  Identities=14%  Similarity=0.095  Sum_probs=55.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ....+++-...+.|.-+|.+|.-.|++|++..+..... -.+++..+-..++|.+-|||..|.-.-.+...
T Consensus         2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry   71 (206)
T KOG1695|consen    2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRY   71 (206)
T ss_pred             CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence            44678888899999999999999999999999987653 23455556778999999999877666555443

>COG5429 Uncharacterized secreted protein [Function unknown]

Probab=86.68  E-value=0.94  Score=43.21  Aligned_cols=67  Identities=16%  Similarity=0.277  Sum_probs=43.5

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCc-------e--EEEEc--CCC-------hhHHHHHHHHhCCC--CccEEEeC
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK-------F--VEINV--DVF-------PPREKELIRRTGSS--QVPQVFLN  220 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~-------y--~eiDV--d~d-------~e~~~eL~~ltG~~--tVPqIFIn  220 (327)
                      ...-|.||+..+|..|--+-+.|.++.-.       |  +..|-  -.|       .+.+..+....|.+  ..||.+||
T Consensus        41 ~~~VVELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn  120 (261)
T COG5429          41 PLGVVELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN  120 (261)
T ss_pred             CceEEEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence            34568899999999999999999887422       1  11221  112       24444555555654  45999999


Q ss_pred             CE-Eeech
Q 039225          221 DK-LFGGL  227 (327)
Q Consensus       221 Ge-~IGG~  227 (327)
                      |+ +.-|.
T Consensus       121 Gr~~~~Ga  128 (261)
T COG5429         121 GRVHANGA  128 (261)
T ss_pred             chhhhcCC
Confidence            96 45454

>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.59  E-value=2.4  Score=39.24  Aligned_cols=69  Identities=16%  Similarity=0.123  Sum_probs=56.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      ++++|+...-+.|+++.-.++.+|++|+.+.|+.  ......++.++.-..+||.+.-+|-.+-....|..
T Consensus         2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~   72 (226)
T KOG0867|consen    2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILR   72 (226)
T ss_pred             CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHH
Confidence            4679999999999999999999999988875544  45666778888888999999999877766655543

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=85.76  E-value=2.4  Score=34.90  Aligned_cols=23  Identities=13%  Similarity=0.255  Sum_probs=16.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR  186 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el  186 (327)
                      -|+.|+.+||+.|.+....|+++
T Consensus        26 vvl~F~a~~C~~C~~~~p~l~~l   48 (126)
T cd03012          26 VLLDFWTYCCINCLHTLPYLTDL   48 (126)
T ss_pred             EEEEEECCCCccHHHHHHHHHHH
Confidence            35567889999999876555443

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=84.93  E-value=2.3  Score=40.58  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=41.8

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHH----HcCCceEEEEcCCC--hhH-----HHHHHHHhCCCCccEEEe
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFK----QRGLKFVEINVDVF--PPR-----EKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~----elgV~y~eiDVd~d--~e~-----~~eL~~ltG~~tVPqIFI  219 (327)
                      ...+++|+.+.||||.+.-.+|+    .+|+.+.-+.+|..  +.+     -....+..|...+|.+|+
T Consensus       144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~L  212 (248)
T PRK13703        144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALML  212 (248)
T ss_pred             cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEE
Confidence            46899999999999998866664    56888888888752  221     112334567789999985

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.47  E-value=2.1  Score=41.38  Aligned_cols=58  Identities=22%  Similarity=0.405  Sum_probs=42.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCc-----eEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLK-----FVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~-----y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG  225 (327)
                      -||=|+.+||+-|+++--+|..+.-.     |-.+||++-.    ....-+|....|+.  |.||..|-
T Consensus        24 v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~----~taa~~gV~amPTFiff~ng~kid   88 (288)
T KOG0908|consen   24 VVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECR----GTAATNGVNAMPTFIFFRNGVKID   88 (288)
T ss_pred             EEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhh----chhhhcCcccCceEEEEecCeEee
Confidence            36669999999999999999877443     5677777322    23445688889986  67998663

>PHA03075 glutaredoxin-like protein; Provisional

Probab=83.99  E-value=1.3  Score=38.00  Aligned_cols=32  Identities=16%  Similarity=0.394  Sum_probs=26.8

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEE
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEI  193 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~ei  193 (327)
                      +..+++|.||.|+-|+.+..+|+.+.-+|+..
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~il   33 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYDIL   33 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccccEE
Confidence            46689999999999999999998887666443

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=83.98  E-value=8.5  Score=36.39  Aligned_cols=34  Identities=12%  Similarity=0.159  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHH-------HHcCCceEEEEcC
Q 039225          163 GRISFFSRSNCRDCTAVRRFF-------KQRGLKFVEINVD  196 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL-------~elgV~y~eiDVd  196 (327)
                      .-|+.|+.+||+.|..-...|       ++.|+.+.-++.+
T Consensus       101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d  141 (236)
T PLN02399        101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCN  141 (236)
T ss_pred             eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            345668899999998644333       3346666666653

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=82.51  E-value=5.4  Score=32.87  Aligned_cols=53  Identities=15%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             cEEEEE-cCCChhHHHHHHHHHH-------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEE
Q 039225          164 RISFFS-RSNCRDCTAVRRFFKQ-------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVF  218 (327)
Q Consensus       164 kVvLYs-k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF  218 (327)
                      .|++|. ..|||.|..-...|.+       .|+.+.-+..+...... .+.+..+ .++|.+.
T Consensus        26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~~-~~~p~~~   86 (149)
T cd02970          26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGKF-LPFPVYA   86 (149)
T ss_pred             EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhcC-CCCeEEE
Confidence            345554 6899999986555443       46666666665433333 3333333 4577554

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=82.39  E-value=2.6  Score=44.06  Aligned_cols=55  Identities=18%  Similarity=0.330  Sum_probs=38.4

Q ss_pred             EEEEEcCCChhHHH-------HHHHHHHc--CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEE
Q 039225          165 ISFFSRSNCRDCTA-------VRRFFKQR--GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKL  223 (327)
Q Consensus       165 VvLYsk~~Cp~C~~-------ak~iL~el--gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~  223 (327)
                      .|-|+.+||.+|++       |-..|.+.  .+..-.+|-...    ..+...++.+.+|++  |.||+-
T Consensus        46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlkiFrnG~~  111 (493)
T KOG0190|consen   46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLKIFRNGRS  111 (493)
T ss_pred             EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEEEEecCCc
Confidence            35699999999985       45566776  344555555533    457777888889987  678874

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=82.28  E-value=1.4  Score=37.52  Aligned_cols=49  Identities=18%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             CCChhHHHHHHHHH----Hc--CCceEEEEcCCChhHH---HHHHH--HhCCCCccEEEe
Q 039225          171 SNCRDCTAVRRFFK----QR--GLKFVEINVDVFPPRE---KELIR--RTGSSQVPQVFL  219 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~----el--gV~y~eiDVd~d~e~~---~eL~~--ltG~~tVPqIFI  219 (327)
                      +|||+|++|.-+++    ..  +..+..+.|...++-+   ..++.  ...-..||+|+-
T Consensus        36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~   95 (119)
T PF06110_consen   36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR   95 (119)
T ss_dssp             BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence            69999999985554    33  3456777775432211   13333  245578999973

; PDB: 1V9W_A 1WOU_A.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=80.17  E-value=6.9  Score=31.27  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=30.4

Q ss_pred             cEEEEEcC-CChhHHHHHHHHHH-------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRS-NCRDCTAVRRFFKQ-------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~-~Cp~C~~ak~iL~e-------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .|+.|+.. ||+.|.....-|++       .|+.+.-+..+...+.++.+++ .+ ..+|.+.-
T Consensus        28 ~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~-~~-~~~~~~~D   89 (124)
T PF00578_consen   28 VVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE-YG-LPFPVLSD   89 (124)
T ss_dssp             EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH-HT-CSSEEEEE
T ss_pred             EEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh-hc-cccccccC
Confidence            34455556 99999866544443       3566666666544444443433 33 45566554

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
1fov_A	82	Glutaredoxin 3 From Escherichia Coli In The Fully O		3e-06
2klx_A	89	Solution Structure Of Glutaredoxin From Bartonella		1e-05
1h75_A	81	Structural Basis For The Thioredoxin-Like Activity		4e-05
3rhb_A	113	Crystal Structure Of The Apo Form Of Glutaredoxin C		5e-05
3grx_A	82	Nmr Structure Of Escherichia Coli Glutaredoxin 3-Gl		5e-05
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		6e-05

>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized Form Length = 82

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  +++  C  C   +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  
Sbjct: 3   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 225 GGLVALNSLRNSGTFD 240
           GG   L +L   G  D
Sbjct: 63  GGYDDLYALDARGGLD 78

>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella Henselae Str. Houston Length = 89

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           I  ++R NC  C   R    ++G+K+ +I+      R++ + R  G +  PQ+F+ D   
Sbjct: 8   IILYTRPNCPYCKRARDLLDKKGVKYTDIDAST-SLRQEMVQRANGRNTFPQIFIGDYHV 66
Query: 225 GGLVALNSLRNSGTFDERFREM 246
           GG   L +L N G  D   +++
Sbjct: 67  GGCDDLYALENKGKLDSLLQDV 88

>pdb|1H75|A Chain A, Structural Basis For The Thioredoxin-Like Activity Profile Of The Glutaredoxin-Like Protein Nrdh-Redoxin From Escherichia Coli Length = 81

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD   P   E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRV-PEAAEALRAQGFRQLPVVIAGDLS 60
Query: 224 FGGL 227
           + G 
Sbjct: 61  WSGF 64

>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From Arabidopsis Thaliana Length = 113

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPR----EKELIRRTGSSQVPQVFLN 220
           +  +S++ C  CT V+  FK+ G++ + + +D   P+    +K L R TG   VP VF+ 
Sbjct: 21  VVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVC 80
Query: 221 DKLFGGLVALNSLRNSGTFDERFREMLGR 249
            K  GG      L   G  +    E  G+
Sbjct: 81  GKHIGGCTDTVKLNRKGDLELMLAEANGK 109

>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin 3-Glutathione Mixed Disulfide Complex, 20 Structures Length = 82

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  +++  C      +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  
Sbjct: 3   VEIYTKETCPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62
Query: 225 GGLVALNSLRNSGTFD 240
           GG   L +L   G  D
Sbjct: 63  GGYDDLYALDARGGLD 78

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  ++R  C  C   +    ++G +F EI+    P    E+  R+G +  PQ+F+     
Sbjct: 8   VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHV 67
Query: 225 GGLVALNSLRNSGTFDERFR 244
           GG   L +L + G  D   +
Sbjct: 68  GGCDDLYALEDEGKLDSLLK 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	3e-15
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	6e-15
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	2e-14
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	3e-14
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	1e-13
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	3e-13
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	5e-13
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	5e-13
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	1e-12
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	1e-12
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	2e-12
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	4e-12
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	7e-12
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	7e-12
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	3e-11
1kte_A	105	Thioltransferase; redox-active center, electron tr	4e-11
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	2e-10
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	2e-10
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	5e-10
2ysr_A	105	DEP domain-containing protein 1; structural genomi	1e-09
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	7e-09
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	9e-09
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	2e-08
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	4e-07
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	2e-05
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	2e-05
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	5e-05

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 69.1 bits (170), Expect = 3e-15
 Identities = 20/78 (25%), Positives = 35/78 (44%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
            +  ++R  C  C   +    ++G +F EI+    P    E+  R+G +  PQ+F+    
Sbjct: 7   DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVH 66

Query: 224 FGGLVALNSLRNSGTFDE 241
            GG   L +L + G  D 
Sbjct: 67  VGGCDDLYALEDEGKLDS 84

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 67.9 bits (167), Expect = 6e-15
 Identities = 20/74 (27%), Positives = 39/74 (52%)

Query: 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGL 227
           +++  C  C   +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  GG 
Sbjct: 6   YTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGY 65

Query: 228 VALNSLRNSGTFDE 241
             L +L   G  D 
Sbjct: 66  DDLYALDARGGLDP 79

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 159 EKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR-TGSSQVPQV 217
             +  +I  ++ S C  C       K++G++F E  +D      + +  R  G   +PQ+
Sbjct: 12  SAVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQI 71

Query: 218 FLNDKLFGGLVALNSLRNSGTFDE 241
           F++D+  GG   + +L  +G  D 
Sbjct: 72  FIDDQHIGGCDDIYALDGAGKLDP 95

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 152 SHGEEGEEKIKGRIS-----FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP----RE 202
           S G   EE I+  ++      +S++ C  CT V+  FK+ G++ + + +D   P     +
Sbjct: 3   SFGSRMEESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQ 62

Query: 203 KELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREM 246
           K L R TG   VP VF+  K  GG      L   G  +    E 
Sbjct: 63  KVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 106

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 12/63 (19%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
            I+ +++  C  CTA ++   + GL +  +++ +     ++ +   G  Q P V ++ + 
Sbjct: 2   SITLYTKPACVQCTATKKALDRAGLAYNTVDISL-DDEARDYVMALGYVQAPVVEVDGEH 60

Query: 224 FGG 226
           + G
Sbjct: 61  WSG 63

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD   P   E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMENRGFDFEMINVDR-VPEAAEALRAQGFRQLPVVIAGDLS 60

Query: 224 FGG 226
           + G
Sbjct: 61  WSG 63

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 63.8 bits (156), Expect = 5e-13
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 155 EEGEEKIKGRIS-----FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELI 206
           EE    + G I       FS+S C   T V+  F   G++   + +D        ++ L 
Sbjct: 4   EELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLS 63

Query: 207 RRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRK 250
             T    VP +F+N    GG         SG   +  +E L   
Sbjct: 64  EITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYD 107

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 151 KSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK-----EL 205
           K  G       +G++  +  S C  C   ++     G+ F  + VD    +E+     E+
Sbjct: 10  KDRGNHVSGVDRGKVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEV 69

Query: 206 IRRTGSSQVPQVFLNDK 222
            R   S   P   +ND+
Sbjct: 70  RRFNPSVSFPTTIINDE 86

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 159 EKIKGRIS-----FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP---REKELIRRTG 210
           +K K   S      FS++ C  C  V++   Q G  +  + +D        +  L   TG
Sbjct: 11  KKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTG 70

Query: 211 SSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFRE 245
              VP VF+  K  GG   +             ++
Sbjct: 71  RGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQD 105

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLNDKLF 224
           FS+++C  CT  ++ F    + +  + +D+       +  L + TG   VP++F+N    
Sbjct: 54  FSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFI 113

Query: 225 GGLVALNSLRNSGTFDERFREMLGRK 250
           GG    + L   G       +   +K
Sbjct: 114 GGATDTHRLHKEGKLLPLVHQCYLKK 139

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 155 EEGEEKIKGRIS-----FFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP---REKELI 206
                +I+  IS      FS+++C  CT  ++ F    + +  + +D+       +  L 
Sbjct: 14  TAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALY 73

Query: 207 RRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRK 250
           + TG   VP++F+N    GG    + L   G       +   +K
Sbjct: 74  KMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKK 117

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 157 GEEKIKGR----ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK-----ELIR 207
           G E +  +    +  +  S C  C     F K+ G+ F  I +D     E+     ++  
Sbjct: 2   GRENLYFQGMAEVLMYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHS 61

Query: 208 RTGSSQVPQVFLNDKLFGG 226
            +GS  VP V   DK   G
Sbjct: 62  ISGSYSVPVVVKGDKHVLG 80

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
            I  ++R NC  C   R    ++G+K+ +I+      R++ + R  G +  PQ+F+ D  
Sbjct: 7   EIILYTRPNCPYCKRARDLLDKKGVKYTDIDAST-SLRQEMVQRANGRNTFPQIFIGDYH 65

Query: 224 FGGLVALNSLRNSGTFDE 241
            GG   L +L N G  D 
Sbjct: 66  VGGCDDLYALENKGKLDS 83

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 158 EEKIK-GRISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPP-REKELIRRTG 210
              +    I  FS+S C     ++   +           +E++        ++ +   TG
Sbjct: 8   SLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTG 67

Query: 211 SSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREM 246
              VP + +N    GG   +  L   G   E  +  
Sbjct: 68  RGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVW 103

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 155 EEGEEKIKGRISF-----FSRSNCRDCT-AVRRFFKQRGL-----KFVEINVDVFPP-RE 202
           +E    +K  I        +++ C  C   +   F++  +       +E++        +
Sbjct: 24  QETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQ 83

Query: 203 KELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREML 247
             L   +G   VP V++N K  GG   L +L+ +G   E  + + 
Sbjct: 84  DALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKPVF 128

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 158 EEKIKGRIS-----FFSRSNCRDCTAVRRFFKQRGLK-----FVEINVDVFPP-REKELI 206
           +  +  +I       F +  C  C   +    Q   K     FV+I         +  L 
Sbjct: 2   QAFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQ 61

Query: 207 RRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREM 246
           + TG+  VP+VF+  +  GG   L S+   G    R +++
Sbjct: 62  QLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 2/78 (2%)

Query: 169 SRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS--SQVPQVFLNDKLFGG 226
           SR      + V R    + +++  +++        E+    G+  +  PQ+   +   G 
Sbjct: 14  SREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGD 73

Query: 227 LVALNSLRNSGTFDERFR 244
                      T  E  +
Sbjct: 74  YELFVEAVEQDTLQEFLK 91

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 11/105 (10%)

Query: 153 HGEEGEEKIKGRIS-----FFSRSNCRDCTAVRRFFKQRGLKFVE---INVDVFPP---R 201
           H +  EE ++ R++      F +  C  C        +   K      +++  F P    
Sbjct: 4   HHQMAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENEL 63

Query: 202 EKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREM 246
                + TG   VP++F      GG   L  + N     +    +
Sbjct: 64  RDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSI 108

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 155 EEGEEKIKGRIS-----FFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPP-RE 202
           +E  + +K  I+       S++ C  C A      ++       +  +++N        +
Sbjct: 12  QETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQ 71

Query: 203 KELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLG 248
             L    G   VP +++N K  GG   L  LR +G  +E    +L 
Sbjct: 72  AALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPILA 117

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 280 VKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDR 320
               R  +P++      K   NCF+  E VD L    + + 
Sbjct: 18  TTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNNS 58

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 168 FSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK--ELIRRTGSSQ-----VPQVFLN 220
           ++R+ C  C   +++F++  + F E  +D +  R K  + + ++G        VPQ+F++
Sbjct: 9   YTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFID 68

Query: 221 DKLFGG---LVAL 230
           D+  GG   L A 
Sbjct: 69  DEHIGGFTELKAN 81

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 10/172 (5%)

Query: 87  NYSFKFGKFIRERSNNFSA---AIVKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISG 143
             +      +    N++     A+ K  N   D     E   AA       E+ +     
Sbjct: 182 QNTPIGDGPVLLPDNHYLCYQSALSKDPNEKRDHMVLLEFVTAAGITHGMHELYKSGSGS 241

Query: 144 LKVVVKLKSHGEEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDV 197
              +V  ++     +   +  I   S++ C    A      ++       +  +++N   
Sbjct: 242 GSGMVSQETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMK 301

Query: 198 FPP-REKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREMLG 248
                +  L    G   VP +++N K  GG   L  LR +G  +E    +L 
Sbjct: 302 EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPILA 353

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 168 FSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQ--VPQVFLN 220
           F RS C  C   +   ++        ++  +++      +++L ++ G     VPQ+F++
Sbjct: 6   FGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVD 65

Query: 221 DKLFGG---LVAL 230
            +  GG     A 
Sbjct: 66  QQHIGGYTDFAAW 78

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 Length = 105

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 255 APAPPLYGFDDDDEEEES-MDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLT 313
           +  P     ++     +S M  ++  ++L    L I+DR+     + N   G+++VD L 
Sbjct: 2   SSVPGAPQLEEAPLTVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLY 61

Query: 314 HHFKC--DRMKVR 324
            H +   +R + R
Sbjct: 62  THVEGFKERREAR 74

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A Length = 87

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 14/76 (18%)

Query: 169 SRSNCRDCTAVRRFFKQRGLKFVEINVD-----VFPPREKELIRRTGSSQ-----VPQVF 218
           +   C  C   +R    +   F  IN+          +  EL+ + G        +PQVF
Sbjct: 10  NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVF 69

Query: 219 LND-KLFGG---LVAL 230
             D    GG   L   
Sbjct: 70  APDGSHIGGFDQLREY 85

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 49/367 (13%), Positives = 95/367 (25%), Gaps = 122/367 (33%)

Query: 7   LIFLD---------SHNFSCDCSLTEMVMEIDSSNPNGEDGVNKINGHDHDSDRRHMAII 57
           L+ L          + N SC      ++        +                  H+++ 
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAAT----------TTHISLD 292

Query: 58  EPHSELPKPEAPAGLFA---------LPPSPSSSPP---SGNYSFKFGKFIRE---RSNN 102
                L   E    L           LP    ++ P   S        + IR+     +N
Sbjct: 293 HHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSI-----IAESIRDGLATWDN 346

Query: 103 FSAAIVKKLNSLDDARAEAEPEPA------ASTVIKPDEVTQFNISGLKVVVKL--KSHG 154
           +      KL ++ ++      EPA          + P      +I    ++  +      
Sbjct: 347 WKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSA---HIP-TILLSLIWFDVIK 401

Query: 155 EEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQV 214
            +    +         S       V +  K+  +    I +++    E E          
Sbjct: 402 SDVMVVVN---KLHKYS------LVEKQPKESTISIPSIYLELKVKLENE---------- 442

Query: 215 PQVFLNDKLFGGLVALNSLRNSGTFDERFREMLGRKCSGDAPAPPL--YGFD-------- 264
               L+  +      ++      TFD           S D   P L  Y +         
Sbjct: 443 --YALHRSI------VDHYNIPKTFD-----------SDDLIPPYLDQYFYSHIGHHLKN 483

Query: 265 -DDDEEEESMDEMLLSVKLLRQRL-----------PIQDRLIKLK-----IVKNCFSGSE 307
            +  E       + L  + L Q++            I + L +LK     I  N      
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 308 MVDVLTH 314
           +V+ +  
Sbjct: 544 LVNAILD 550

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Length = 241

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 26/132 (19%)

Query: 99  RSNNFSAAI----VKKLNSLDDARAEAEPEPAASTVIKPDEVTQFNISGLKVVVKLKSHG 154
           RS  +S  +    V+K+        E         V   D +       LK    L    
Sbjct: 123 RSWRYSMLVKNGVVEKMF------IEPNEPGDPFKVSDADTM-------LK---YLAP-- 164

Query: 155 EEGEEKIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQV 214
              + +++  IS F++  C  C   ++    +GL F EI +         +   +G + V
Sbjct: 165 ---QHQVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGH-DATIVSVRAVSGRTTV 220

Query: 215 PQVFLNDKLFGG 226
           PQVF+  K  GG
Sbjct: 221 PQVFIGGKHIGG 232

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 8/81 (9%)

Query: 169 SRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR--------TGSSQVPQVFLN 220
           S +  +    V  F +   + F E ++       K +           TG    PQ+F  
Sbjct: 12  STAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNE 71

Query: 221 DKLFGGLVALNSLRNSGTFDE 241
            +  G   A    R +     
Sbjct: 72  SQYRGDYDAFFEARENNAVYA 92

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVD---VFPPREKELIRRTGSSQVPQVFLN 220
            +  FS++ C  C  V+    +  +K   I +D        +K L   +    VPQ+F+ 
Sbjct: 19  AVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVR 78

Query: 221 DKLFGGLVALNSLRNSGTFDERFRE 245
            K  G    +    ++        E
Sbjct: 79  GKFIGDSQTVLKYYSNDELAGIVNE 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.91
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.89
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.89
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.89
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.89
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.88
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.87
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.87
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.86
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.86
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.85
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.85
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.85
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.84
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.83
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.82
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.81
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.8
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.79
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.78
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.78
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.77
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.77
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.76
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.75
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.75
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.73
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.7
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.61
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.54
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.53
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.53
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.53
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.53
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.47
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.46
2ysr_A	105	DEP domain-containing protein 1; structural genomi	99.4
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.31
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.23
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.23
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	99.16
1v3f_A	120	Pleckstrin 2; three-helix bundle, structural genom	99.14
1uhw_A	109	Pleckstrin; three-helix bundle, beta-ARM, riken st	99.11
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.09
2cso_A	127	Pleckstrin; DEP domain, platelet P47 protein, stru	98.96
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	98.92
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	98.86
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	98.86
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	98.84
3ml6_A	385	Chimeric complex between protein dishevlled2 HOMO	98.74
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	98.6
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.58
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.52
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	98.47
3l78_A	120	Regulatory protein SPX; transcription, transcripti	98.45
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.4
3rdw_A	121	Putative arsenate reductase; structural genomics,	98.38
3gkx_A	120	Putative ARSC family related protein; ARSC family	98.38
3fz4_A	120	Putative arsenate reductase; APC61768, structural	98.36
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.31
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.18
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	98.18
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.15
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.15
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.08
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.07
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.07
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	98.06
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.05
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.03
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.03
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.02
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.02
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.02
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.01
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.0
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.0
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	97.99
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	97.99
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.98
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.97
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.96
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	97.94
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	97.93
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.92
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	97.91
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.9
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.9
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.9
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.89
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	97.89
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.89
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	97.89
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.88
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.87
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.86
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.86
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.86
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.86
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	97.84
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.83
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.83
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.83
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.8
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	97.8
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.8
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.8
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	97.8
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.78
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	97.78
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	97.77
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	97.77
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	97.76
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	97.75
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	97.74
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.74
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	97.73
3lxz_A	229	Glutathione S-transferase family protein; structur	97.73
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.72
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.72
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	97.72
3lyp_A	215	Stringent starvation protein A; structural genomic	97.72
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	97.72
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	97.72
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	97.72
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	97.71
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	97.71
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.71
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	97.7
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	97.7
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	97.7
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.7
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	97.69
3lyk_A	216	Stringent starvation protein A homolog; structural	97.69
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	97.69
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	97.69
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	97.69
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.69
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	97.69
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	97.69
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	97.68
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	97.68
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	97.68
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	97.68
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	97.67
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	97.67
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	97.66
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	97.65
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	97.65
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	97.64
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	97.64
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	97.63
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	97.63
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.63
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	97.61
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	97.6
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.59
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	97.59
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.59
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	97.58
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	97.58
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	97.57
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.57
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.57
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	97.57
1r5a_A	218	Glutathione transferase; glutathione S-transferase	97.56
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	97.56
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	97.55
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	97.55
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.55
4dej_A	231	Glutathione S-transferase related protein; transfe	97.55
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	97.55
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	97.54
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	97.54
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	97.54
3n5o_A	235	Glutathione transferase; seattle structural genomi	97.53
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.53
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	97.52
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	97.51
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	97.49
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.49
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.49
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	97.49
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	97.47
3niv_A	222	Glutathione S-transferase; structural genomics, PS	97.45
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.45
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.45
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.45
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.43
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	97.43
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	97.42
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.42
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	97.4
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.4
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.4
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	97.4
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	96.49
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.36
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	97.35
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	97.34
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.33
4glt_A	225	Glutathione S-transferase-like protein; structural	97.33
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	97.31
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	96.41
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	97.3
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	97.3
4exj_A	238	Uncharacterized protein; transferase-like protein,	97.29
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	97.29
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	97.29
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.26
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.26
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	97.26
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	97.23
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	97.22
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	97.22
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	97.21
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	97.21
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	97.21
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	97.17
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.14
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	97.14
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	97.1
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.09
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	97.09
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.08
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	97.07
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	97.06
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.05
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.05
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	97.03
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	97.02
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.02
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	97.01
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	97.01
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.0
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	97.0
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	97.0
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	96.96
4ecj_A	244	Glutathione S-transferase; transferase-like protei	96.94
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.92
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	96.92
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	96.9
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	96.89
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	96.89
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	96.88
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	96.84
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	96.84
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	96.82
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	96.82
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	96.81
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	96.79
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	96.79
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	96.76
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.76
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	96.73
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	96.73
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.73
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	96.73
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	96.72
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.72
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.72
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	96.71
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.71
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	96.7
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	96.68
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	96.67
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	96.63
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	96.62
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	96.61
3raz_A	151	Thioredoxin-related protein; structural genomics,	96.57
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	96.56
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	96.54
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	96.53
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.5
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	96.47
3uar_A	227	Glutathione S-transferase; GSH binding site; HET:	96.45
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	96.42
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	96.37
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.37
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	96.35
1dug_A	234	Chimera of glutathione S-transferase-synthetic lin	96.32
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	96.32
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.26
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	96.26
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	96.22
2lrt_A	152	Uncharacterized protein; structural genomics, thio	96.2
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.18
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	96.16
3ira_A	173	Conserved protein; methanosarcina mazei,structural	96.14
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	96.03
2pvq_A	201	Glutathione S-transferase; xenobiotics detoxificat	96.03
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	96.01
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	96.01
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	95.98
1n2a_A	201	Glutathione S-transferase; HET: GTS; 1.90A {Escher	95.97
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	95.97
4gf0_A	215	Glutathione S-transferase; GST, enzyme function in	95.94
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	95.94
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	94.92
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	95.76
1pmt_A	203	PMGST, GST B1-1, glutathione transferase; glutathi	95.76
3h1n_A	252	Probable glutathione S-transferase; APC84167, bord	95.74
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	95.73
4evm_A	138	Thioredoxin family protein; structural genomics, n	95.72
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	95.7
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	95.69
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	95.68
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	95.68
2dsa_A	203	Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu	95.65
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	95.53
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	95.36
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	95.35
1f2e_A	201	Glutathione S-transferase; GST complexed with glut	95.33
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	95.22
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	95.12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	95.11
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	95.11
3ppu_A	352	Glutathione-S-transferase; GST fold; HET: GSH; 2.3	94.89
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	94.62
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	94.55
1b8x_A	280	Protein (AML-1B); nuclear matrix targeting signal	94.49
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	94.3
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	94.28
3m1g_A	362	Putative glutathione S-transferase; ECM4-like subf	93.99
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	93.91
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	93.84
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	93.69
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	93.43
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	92.19
3kgk_A	110	Arsenical resistance operon trans-acting represso;	92.99
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	92.85
3ktb_A	106	Arsenical resistance operon trans-acting represso;	92.7
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	92.65
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	92.56
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	92.53
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	92.32
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	91.81
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	91.77
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	91.64
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	91.62
4gci_A	211	Glutathione S-transferase; GST, enzyme function in	91.58
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	91.55
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	91.31
2fno_A	248	AGR_PAT_752P; thioredoxin fold, GST C-terminal dom	90.9
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	90.47
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	90.46
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	89.68
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	89.21
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	88.85
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	88.64
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	88.44
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	87.05
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	86.79
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	86.52
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	86.39
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	85.14
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	84.55
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	84.3
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	84.08
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	84.05
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	83.34
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	82.76
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	82.6
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	82.35
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	81.78
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	81.64
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	81.6
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	81.06
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	81.05
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	80.42

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.91  E-value=3e-24  Score=179.80  Aligned_cols=89  Identities=21%  Similarity=0.382  Sum_probs=84.4

Q ss_pred             cCCcEEEEEcC-----CChhHHHHHHHHHHcCC-ceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSRS-----NCRDCTAVRRFFKQRGL-KFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk~-----~Cp~C~~ak~iL~elgV-~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..++|+||+|.     +||||.+|+++|+++|+ +|+++||+.+++.+++|++++||+|||||||||+||||+|++++|+
T Consensus        18 ~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG~Ddl~~l~   97 (118)
T 2wul_A           18 KKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMH   97 (118)
T ss_dssp             HHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEECHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECCHHHHHHHH
Confidence            35899999995     69999999999999999 6999999999999999999999999999999999999999999999


Q ss_pred             hcCchHHHHHHhhcc
Q 039225          235 NSGTFDERFREMLGR  249 (327)
Q Consensus       235 esGeL~~~Lk~~~~~  249 (327)
                      ++|+|+++|++++..
T Consensus        98 ~~GeL~~lL~~~Gi~  112 (118)
T 2wul_A           98 QNGDLVEELKKLGIH  112 (118)
T ss_dssp             HHTHHHHHHHHTTCC
T ss_pred             HCCCHHHHHHHcCCc
Confidence            999999999998853

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.89  E-value=2.5e-23  Score=169.45  Aligned_cols=88  Identities=16%  Similarity=0.298  Sum_probs=84.2

Q ss_pred             cCCcEEEEEcC-----CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSRS-----NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk~-----~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ..++|+||+++     +||||++|+++|+++|++|+++||+.+++.+++|++++|+++||+|||||++|||++++.++++
T Consensus        16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l~~l~~   95 (109)
T 3ipz_A           16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFK   95 (109)
T ss_dssp             TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETTEEEECHHHHHHHHH
T ss_pred             ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEEEeCHHHHHHHHH
Confidence            46899999996     9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhhc
Q 039225          236 SGTFDERFREMLG  248 (327)
Q Consensus       236 sGeL~~~Lk~~~~  248 (327)
                      +|+|+++|+++++
T Consensus        96 ~G~L~~~L~~a~~  108 (109)
T 3ipz_A           96 TGELQEEVEKAMC  108 (109)
T ss_dssp             HSHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhhc
Confidence            9999999998864

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=172.48  Aligned_cols=89  Identities=15%  Similarity=0.264  Sum_probs=84.5

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ..++|+||++     ++||||.+|+++|+++|++|+++||+.+++.+++|++++|+++||+|||||++|||++++.++++
T Consensus        14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~~iGG~d~l~~l~~   93 (111)
T 3zyw_A           14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEA   93 (111)
T ss_dssp             TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEEECHHHHHHHHH
T ss_pred             hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            4679999999     99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhhcc
Q 039225          236 SGTFDERFREMLGR  249 (327)
Q Consensus       236 sGeL~~~Lk~~~~~  249 (327)
                      +|+|.++|+++..+
T Consensus        94 ~G~L~~~L~~a~~~  107 (111)
T 3zyw_A           94 SEELDTICPKAAEN  107 (111)
T ss_dssp             TTCHHHHSCCCCCC
T ss_pred             CCCHHHHHHhCccc
Confidence            99999999877643

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.7e-23  Score=171.65  Aligned_cols=90  Identities=19%  Similarity=0.345  Sum_probs=85.3

Q ss_pred             cCCcEEEEEcC-----CChhHHHHHHHHHHcCCc---eEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          161 IKGRISFFSRS-----NCRDCTAVRRFFKQRGLK---FVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       161 ~~~kVvLYsk~-----~Cp~C~~ak~iL~elgV~---y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      ..++|+||+++     +||||.+|+++|+++|++   |+++||+.+++.+++|++++|+++||+|||||++|||++++++
T Consensus        14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~~iGG~d~l~~   93 (121)
T 3gx8_A           14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIGGCDVITS   93 (121)
T ss_dssp             HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTEEEESHHHHHH
T ss_pred             ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEecHHHHHH
Confidence            36899999996     999999999999999999   9999999999999999999999999999999999999999999


Q ss_pred             hhhcCchHHHHHHhhccC
Q 039225          233 LRNSGTFDERFREMLGRK  250 (327)
Q Consensus       233 L~esGeL~~~Lk~~~~~~  250 (327)
                      |+++|+|.++|++++.-.
T Consensus        94 l~~~G~L~~~L~~~g~~~  111 (121)
T 3gx8_A           94 MARSGELADLLEEAQALV  111 (121)
T ss_dssp             HHHHTHHHHHHHHTTCBC
T ss_pred             HHHcCChHHHHHHcCCCC
Confidence            999999999999987543

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.88  E-value=1.5e-22  Score=170.62  Aligned_cols=89  Identities=19%  Similarity=0.288  Sum_probs=82.2

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++|+||+++|||||.+|+++|++.   +++|+++||+.+   .+.+++|++++|++|||+|||||++|||++++.+|+
T Consensus        12 ~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~G~~IGG~ddl~~l~   91 (127)
T 3l4n_A           12 DLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLH   91 (127)
T ss_dssp             TSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEECCCHHHHHHHH
T ss_pred             ccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEECCEEEcCHHHHHHHH
Confidence            46789999999999999999999985   789999999876   467888999999999999999999999999999999


Q ss_pred             hcCchHHHHHHhhcc
Q 039225          235 NSGTFDERFREMLGR  249 (327)
Q Consensus       235 esGeL~~~Lk~~~~~  249 (327)
                      ++|+|+++|+++++.
T Consensus        92 ~~G~L~~lL~~~g~~  106 (127)
T 3l4n_A           92 TQGKLLESLQVWSDG  106 (127)
T ss_dssp             HTTCHHHHHHHTCTT
T ss_pred             HCCCHHHHHHHhcCC
Confidence            999999999998764

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.87  E-value=4e-22  Score=156.89  Aligned_cols=83  Identities=13%  Similarity=0.233  Sum_probs=79.1

Q ss_pred             CCcEEEEEcCCChhH------HHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC--CCCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDC------TAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG--SSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C------~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG--~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      |.+|+||++++||+|      .+|+++|+++|++|+++||+.+++.+++|++++|  ..+||+|||||++|||++++.++
T Consensus         1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l~~l   80 (93)
T 1t1v_A            1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEA   80 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHH
T ss_pred             CCCEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHHHHHH
Confidence            357999999999999      8999999999999999999999999999999999  67999999999999999999999


Q ss_pred             hhcCchHHHHH
Q 039225          234 RNSGTFDERFR  244 (327)
Q Consensus       234 ~esGeL~~~Lk  244 (327)
                      +++|+|+++|+
T Consensus        81 ~~~g~L~~~l~   91 (93)
T 1t1v_A           81 VEQDTLQEFLK   91 (93)
T ss_dssp             HHTTCHHHHTT
T ss_pred             HhcCCHHHHhC
Confidence            99999999885

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.87  E-value=7.6e-22  Score=158.45  Aligned_cols=84  Identities=24%  Similarity=0.539  Sum_probs=80.6

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEeCCEEeechHHHHHhhhcCch
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFLNDKLFGGLVALNSLRNSGTF  239 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFInGe~IGG~deL~~L~esGeL  239 (327)
                      ..++|+||+++|||+|++|+++|+++|++|+++||+.+++.+++|++++ |+.+||+|||||++|||++++.+++++|+|
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~~~g~L   93 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALDGAGKL   93 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHHHHTTCH
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHHHHcCCH
Confidence            4578999999999999999999999999999999999999999999998 999999999999999999999999999999


Q ss_pred             HHHHH
Q 039225          240 DERFR  244 (327)
Q Consensus       240 ~~~Lk  244 (327)
                      +++|+
T Consensus        94 ~~~L~   98 (99)
T 3qmx_A           94 DPLLH   98 (99)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99985

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.86  E-value=8.6e-22  Score=167.68  Aligned_cols=89  Identities=16%  Similarity=0.321  Sum_probs=85.0

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      .+++|+||++     ++||||.+|+++|+++|++|+++||+.+++.+++|++++|+++||+|||||++|||++++.+|++
T Consensus        33 ~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~~iGG~d~l~~l~~  112 (135)
T 2wci_A           33 AENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ  112 (135)
T ss_dssp             HHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEEESHHHHHHHHH
T ss_pred             ccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEECCEEEEChHHHHHHHH
Confidence            3578999999     89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhhcc
Q 039225          236 SGTFDERFREMLGR  249 (327)
Q Consensus       236 sGeL~~~Lk~~~~~  249 (327)
                      +|+|.++|+.++..
T Consensus       113 ~G~L~~~L~~~g~~  126 (135)
T 2wci_A          113 RGELQQLIKETAAK  126 (135)
T ss_dssp             HTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHcCCC
Confidence            99999999988754

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.86  E-value=1.5e-21  Score=158.03  Aligned_cols=86  Identities=15%  Similarity=0.321  Sum_probs=82.1

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      .+++|+||++     +|||+|++|+++|+++|++|+++||+.+++.+++|.+++|+++||+|||||++|||++++.++++
T Consensus        13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~igG~d~l~~l~~   92 (109)
T 1wik_A           13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKD   92 (109)
T ss_dssp             TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEECHHHHHHHHH
T ss_pred             ccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence            3578999999     99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHh
Q 039225          236 SGTFDERFREM  246 (327)
Q Consensus       236 sGeL~~~Lk~~  246 (327)
                      +|+|.++|+.+
T Consensus        93 ~g~L~~~L~~a  103 (109)
T 1wik_A           93 NGELLPILKGE  103 (109)
T ss_dssp             HTCSHHHHHTC
T ss_pred             CCCHHHHHhcc
Confidence            99999999754

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.85  E-value=1.9e-21  Score=158.77  Aligned_cols=85  Identities=25%  Similarity=0.416  Sum_probs=78.8

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG  237 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG  237 (327)
                      ..++|+||+++|||||.+|+.+|+++|++|+++||+.+   .+.+++|++.+|+++||+|||||++|||++++.+++++|
T Consensus        15 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l~~l~~~G   94 (114)
T 3h8q_A           15 ERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSG   94 (114)
T ss_dssp             HHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHHHT
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHHHHHHHCC
Confidence            35789999999999999999999999999999999963   356678989999999999999999999999999999999


Q ss_pred             chHHHHHH
Q 039225          238 TFDERFRE  245 (327)
Q Consensus       238 eL~~~Lk~  245 (327)
                      +|.++|++
T Consensus        95 ~L~~~l~~  102 (114)
T 3h8q_A           95 LLQKLLQE  102 (114)
T ss_dssp             HHHHHHHS
T ss_pred             CHHHHhcC
Confidence            99999974

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.85  E-value=1.7e-21  Score=157.45  Aligned_cols=87  Identities=30%  Similarity=0.546  Sum_probs=79.4

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC----hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF----PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG  237 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d----~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG  237 (327)
                      +++|++|+++|||+|++++.+|+++|++|+++||+.+    ++.+++|.+.+|+++||+|||||++|||++++.+++++|
T Consensus        18 ~~~v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~~~~~~~~g   97 (113)
T 3rhb_A           18 ENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKG   97 (113)
T ss_dssp             HSSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHHHHT
T ss_pred             cCCEEEEECCCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHHHHHHHHcC
Confidence            4679999999999999999999999999999999874    567788999999999999999999999999999999999


Q ss_pred             chHHHHHHhhc
Q 039225          238 TFDERFREMLG  248 (327)
Q Consensus       238 eL~~~Lk~~~~  248 (327)
                      +|.++|+++++
T Consensus        98 ~L~~~l~~~~~  108 (113)
T 3rhb_A           98 DLELMLAEANG  108 (113)
T ss_dssp             HHHHHHTC---
T ss_pred             CHHHHHHHHhh
Confidence            99999988764

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=4.1e-21  Score=156.97  Aligned_cols=84  Identities=19%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             CCcEEEEEcCCChhHH------HHHHHHHHcCCceEEEEcCCChhHHHHHHHHh--------CCCCccEEEeCCEEeech
Q 039225          162 KGRISFFSRSNCRDCT------AVRRFFKQRGLKFVEINVDVFPPREKELIRRT--------GSSQVPQVFLNDKLFGGL  227 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~------~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt--------G~~tVPqIFInGe~IGG~  227 (327)
                      .++|+||++++||+|+      +|+++|++++++|+++||+.+++.+++|.+++        |+++||+|||||++|||+
T Consensus         7 ~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~iGG~   86 (111)
T 2ct6_A            7 GMVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDY   86 (111)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEEEEEH
T ss_pred             ccEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEEEeCH
Confidence            3579999999999999      89999999999999999999999999999985        999999999999999999


Q ss_pred             HHHHHhhhcCchHHHHHH
Q 039225          228 VALNSLRNSGTFDERFRE  245 (327)
Q Consensus       228 deL~~L~esGeL~~~Lk~  245 (327)
                      +++.+++++|+|.++|+.
T Consensus        87 d~l~~l~~~g~L~~~L~~  104 (111)
T 2ct6_A           87 DSFFESKESNTVFSFLGL  104 (111)
T ss_dssp             HHHHHHHTTTCHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHcC
Confidence            999999999999999963

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.84  E-value=4.9e-21  Score=153.57  Aligned_cols=83  Identities=17%  Similarity=0.366  Sum_probs=80.2

Q ss_pred             CCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhc
Q 039225          162 KGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNS  236 (327)
Q Consensus       162 ~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~es  236 (327)
                      +++|+||++     +|||+|++++.+|++++++|.++||+.+++.+++|.+++|+++||+||+||++|||++++.+++++
T Consensus        16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~d~~~~l~~~   95 (105)
T 2yan_A           16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKEN   95 (105)
T ss_dssp             SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEEECHHHHHHHHHT
T ss_pred             cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEEEeChHHHHHHHHC
Confidence            568999999     999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHH
Q 039225          237 GTFDERFR  244 (327)
Q Consensus       237 GeL~~~Lk  244 (327)
                      |+|.++|+
T Consensus        96 g~L~~~l~  103 (105)
T 2yan_A           96 GELLPILR  103 (105)
T ss_dssp             TCHHHHHT
T ss_pred             CCHHHHhc
Confidence            99999986

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.83  E-value=8e-21  Score=156.42  Aligned_cols=88  Identities=24%  Similarity=0.467  Sum_probs=82.0

Q ss_pred             CCcEEEEEcCCChhHHHH-HHHHHHcC---CceEEEEcCCCh---hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAV-RRFFKQRG---LKFVEINVDVFP---PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~a-k~iL~elg---V~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +.+|++|+++|||+|+++ +.+|++++   ++|+.+||+.++   +.+++|.+.+|+++||+|||||++|||++++.+++
T Consensus        24 ~~~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l~~l~  103 (118)
T 3c1r_A           24 ENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELR  103 (118)
T ss_dssp             HSSEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHH
T ss_pred             cCcEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEEECCEEEEcHHHHHHHH
Confidence            468999999999999999 99999999   999999999875   47788999999999999999999999999999999


Q ss_pred             hcCchHHHHHHhhcc
Q 039225          235 NSGTFDERFREMLGR  249 (327)
Q Consensus       235 esGeL~~~Lk~~~~~  249 (327)
                      ++|+|+++|+.++++
T Consensus       104 ~~g~L~~~L~~~g~~  118 (118)
T 3c1r_A          104 ETGELEELLEPILAN  118 (118)
T ss_dssp             HHTHHHHHHHHHHC-
T ss_pred             HCCcHHHHHHHcCCC
Confidence            999999999998863

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.82  E-value=3.4e-20  Score=155.94  Aligned_cols=80  Identities=18%  Similarity=0.224  Sum_probs=77.6

Q ss_pred             EEEEEcCCChhH------HHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh--------CCCCccEEEeCCEEeechHHH
Q 039225          165 ISFFSRSNCRDC------TAVRRFFKQRGLKFVEINVDVFPPREKELIRRT--------GSSQVPQVFLNDKLFGGLVAL  230 (327)
Q Consensus       165 VvLYsk~~Cp~C------~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt--------G~~tVPqIFInGe~IGG~deL  230 (327)
                      |+||++++||+|      .+|+++|+.+||+|+++||+.+++.+++|.+.+        |.+++|||||||++|||+|++
T Consensus         2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~Dd~   81 (121)
T 1u6t_A            2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF   81 (121)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEEHHHH
T ss_pred             EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEEechHHH
Confidence            899999999999      799999999999999999999999999999998        899999999999999999999


Q ss_pred             HHhhhcCchHHHHH
Q 039225          231 NSLRNSGTFDERFR  244 (327)
Q Consensus       231 ~~L~esGeL~~~Lk  244 (327)
                      .++.++|+|.++|.
T Consensus        82 ~~l~e~g~L~~lL~   95 (121)
T 1u6t_A           82 FEARENNAVYAFLG   95 (121)
T ss_dssp             HHHHHTTCHHHHHT
T ss_pred             HHhhhhChHHHHHc
Confidence            99999999999994

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.81  E-value=3.6e-20  Score=155.46  Aligned_cols=85  Identities=22%  Similarity=0.467  Sum_probs=79.7

Q ss_pred             CCcEEEEEcCCChhHHHH-HHHHHHcC---CceEEEEcCCCh---hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAV-RRFFKQRG---LKFVEINVDVFP---PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~a-k~iL~elg---V~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++|+||+++|||||+++ +.+|++++   ++|+++||+.++   +.+++|.+++|+++||+|||||++|||++++.+++
T Consensus        36 ~~~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi~g~~igG~d~l~~l~  115 (129)
T 3ctg_A           36 QKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLK  115 (129)
T ss_dssp             HSSEEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEECCEEEcCHHHHHHHH
Confidence            568999999999999999 99999999   999999999874   57789999999999999999999999999999999


Q ss_pred             hcCchHHHHHHh
Q 039225          235 NSGTFDERFREM  246 (327)
Q Consensus       235 esGeL~~~Lk~~  246 (327)
                      ++|+|.++|+.+
T Consensus       116 ~~G~L~~~L~~a  127 (129)
T 3ctg_A          116 KNGKLAEILKPV  127 (129)
T ss_dssp             HTTHHHHHTTTT
T ss_pred             HCCCHHHHHHHH
Confidence            999999999764

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.80  E-value=4.2e-19  Score=140.35  Aligned_cols=87  Identities=22%  Similarity=0.454  Sum_probs=81.6

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCc---eEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLK---FVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~---y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      +++|++|+++|||+|++++.+|++++++   |+.+||+.+   ++.+++|.+.+|..+||+||+||++|||++++.++++
T Consensus        11 ~~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g~~i~g~~~~~~~~~   90 (105)
T 1kte_A           11 PGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHK   90 (105)
T ss_dssp             TTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             cCCEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECCEEEeccHHHHHHHH
Confidence            4679999999999999999999999999   999999987   4677889999999999999999999999999999999


Q ss_pred             cCchHHHHHHhhc
Q 039225          236 SGTFDERFREMLG  248 (327)
Q Consensus       236 sGeL~~~Lk~~~~  248 (327)
                      +|+|+++|+.++.
T Consensus        91 ~g~L~~~l~~~g~  103 (105)
T 1kte_A           91 RGELLTRLQQVGA  103 (105)
T ss_dssp             HTHHHHHHHHHTC
T ss_pred             CCcHHHHHHHcCC
Confidence            9999999998874

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.79  E-value=1e-18  Score=135.22  Aligned_cols=86  Identities=23%  Similarity=0.507  Sum_probs=81.2

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchH
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFD  240 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~  240 (327)
                      ++.+|++|+++||++|++++.+|++++++|+++||+.+++.++++.+.+|..++|++|+||++|||++++.+++++|+|+
T Consensus         4 ~m~~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~~~l~   83 (92)
T 2khp_A            4 SMVDVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKLD   83 (92)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEEETTEEEESHHHHHHHHTTTCHH
T ss_pred             CcccEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEcCHHHHHHHHHcCCHH
Confidence            45679999999999999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 039225          241 ERFREML  247 (327)
Q Consensus       241 ~~Lk~~~  247 (327)
                      ++|+ ++
T Consensus        84 ~~l~-~g   89 (92)
T 2khp_A           84 SLLK-TG   89 (92)
T ss_dssp             HHHH-HS
T ss_pred             HHHh-cc
Confidence            9998 54

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.78  E-value=7.4e-19  Score=132.25  Aligned_cols=81  Identities=25%  Similarity=0.640  Sum_probs=77.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERF  243 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~~L  243 (327)
                      +|++|+++|||+|++++.+|+++|++|+.+||+.+++.++++.+.+|..++|++|+||+.|||++++.+++++|+|+++|
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~l~~~l   81 (82)
T 1fov_A            2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL   81 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTCSHHHH
T ss_pred             cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHCCCHHHHh
Confidence            58999999999999999999999999999999998888889999999999999999999999999999999999999987


Q ss_pred             H
Q 039225          244 R  244 (327)
Q Consensus       244 k  244 (327)
                      +
T Consensus        82 ~   82 (82)
T 1fov_A           82 K   82 (82)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.78  E-value=8.7e-19  Score=135.73  Aligned_cols=71  Identities=23%  Similarity=0.436  Sum_probs=68.0

Q ss_pred             cEEEEEcC----CChhHHHHHHHHHHcCCceEEEEcC-----CChhHHHHHHHHhCCC-----CccEEEe-CCEEeechH
Q 039225          164 RISFFSRS----NCRDCTAVRRFFKQRGLKFVEINVD-----VFPPREKELIRRTGSS-----QVPQVFL-NDKLFGGLV  228 (327)
Q Consensus       164 kVvLYsk~----~Cp~C~~ak~iL~elgV~y~eiDVd-----~d~e~~~eL~~ltG~~-----tVPqIFI-nGe~IGG~d  228 (327)
                      +|+||+++    +||+|.+|+++|+++|++|+++||+     .+++.+++|++++|+.     +||+||| ||++|||++
T Consensus         1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d   80 (87)
T 1aba_A            1 MFKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD   80 (87)
T ss_dssp             CEEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHH
T ss_pred             CEEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHH
Confidence            48999999    9999999999999999999999999     8889999999999999     9999999 999999999


Q ss_pred             HHHHhh
Q 039225          229 ALNSLR  234 (327)
Q Consensus       229 eL~~L~  234 (327)
                      ++.+++
T Consensus        81 ~l~~~~   86 (87)
T 1aba_A           81 QLREYF   86 (87)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999886

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.77  E-value=1.2e-18  Score=134.51  Aligned_cols=84  Identities=27%  Similarity=0.643  Sum_probs=78.6

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEeCCEEeechHHHHHhhhcCch
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFLNDKLFGGLVALNSLRNSGTF  239 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFInGe~IGG~deL~~L~esGeL  239 (327)
                      ++.+|++|+++|||+|++++.+|++++++|+.+||+  ++.++++.+.+ |..+||+||+||++|||++++.+++++|+|
T Consensus         4 mm~~v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~l   81 (89)
T 2klx_A            4 SMKEIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALENKGKL   81 (89)
T ss_dssp             CCCCEEEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHSSCCSCEEEETTEECCSHHHHHHHHHHTTH
T ss_pred             CcceEEEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCCCCCcCEEEECCEEEeChHHHHHHHHcCcH
Confidence            456899999999999999999999999999999999  77778898888 999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 039225          240 DERFREM  246 (327)
Q Consensus       240 ~~~Lk~~  246 (327)
                      .++|++.
T Consensus        82 ~~~l~~~   88 (89)
T 2klx_A           82 DSLLQDV   88 (89)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9999763

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.77  E-value=2e-18  Score=140.25  Aligned_cols=88  Identities=16%  Similarity=0.373  Sum_probs=82.4

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCc---eEEEEcCCCh---hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK---FVEINVDVFP---PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~---y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++|++|+++|||+|++++.+|++++++   |..+||+.++   +.+++|.+.+|..+||+||+||++|||++++..++
T Consensus        17 ~~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~   96 (114)
T 2hze_A           17 ANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTSIGGYSDLLEID   96 (114)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHHHHHH
T ss_pred             ccCCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEEeCcHHHHHHH
Confidence            35789999999999999999999999999   9999999886   77788999999999999999999999999999999


Q ss_pred             hcCchHHHHHHhhc
Q 039225          235 NSGTFDERFREMLG  248 (327)
Q Consensus       235 esGeL~~~Lk~~~~  248 (327)
                      ++|+|.++|++++.
T Consensus        97 ~~~~L~~~L~~~g~  110 (114)
T 2hze_A           97 NMDALGDILSSIGV  110 (114)
T ss_dssp             HTTCHHHHHHHTTC
T ss_pred             HCChHHHHHHHcCC
Confidence            99999999998764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=4.1e-18  Score=142.17  Aligned_cols=88  Identities=20%  Similarity=0.503  Sum_probs=82.4

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCc
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGT  238 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGe  238 (327)
                      +++|+||+++|||+|++++.+|++++++|..+||+.+   ++.+++|.+.+|..+||+||+||++|||++++..++++|+
T Consensus        26 ~~~vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i~G~~igg~~~l~~~~~~~~  105 (130)
T 2cq9_A           26 DNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGK  105 (130)
T ss_dssp             HSSEEEEECSSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEETTEEEEEHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCc
Confidence            4679999999999999999999999999999999987   6777889999999999999999999999999999999999


Q ss_pred             hHHHHHHhhcc
Q 039225          239 FDERFREMLGR  249 (327)
Q Consensus       239 L~~~Lk~~~~~  249 (327)
                      |.++|+.++..
T Consensus       106 L~~~L~~~g~~  116 (130)
T 2cq9_A          106 LLPLVHQCYLK  116 (130)
T ss_dssp             SHHHHHHHSSS
T ss_pred             HHHHHHHcCcH
Confidence            99999998743

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.75  E-value=3.2e-18  Score=136.78  Aligned_cols=80  Identities=13%  Similarity=0.297  Sum_probs=68.1

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEe-CCEEeechHHHHHhhhcCch
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFL-NDKLFGGLVALNSLRNSGTF  239 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFI-nGe~IGG~deL~~L~esGeL  239 (327)
                      ..+|+||+++|||||.+||++|+++|++|+++||+.+++.++++.+++ |.++||+||| ||+.++|++.       .+|
T Consensus         3 ta~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~-------~el   75 (92)
T 2lqo_A            3 TAALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSA-------DEV   75 (92)
T ss_dssp             SSCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCH-------HHH
T ss_pred             CCcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCH-------HHH
Confidence            457999999999999999999999999999999999999999999886 8999999999 5788888742       234


Q ss_pred             HHHHHHhhc
Q 039225          240 DERFREMLG  248 (327)
Q Consensus       240 ~~~Lk~~~~  248 (327)
                      .++|+++++
T Consensus        76 ~~~L~el~g   84 (92)
T 2lqo_A           76 KAKLVKIAG   84 (92)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            455666554

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.75  E-value=1.4e-18  Score=169.59  Aligned_cols=89  Identities=22%  Similarity=0.366  Sum_probs=79.5

Q ss_pred             cCCcEEEEEcCCChhHHHHHH-HHHHcCCceEEEEc------CCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          161 IKGRISFFSRSNCRDCTAVRR-FFKQRGLKFVEINV------DVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~-iL~elgV~y~eiDV------d~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .+++|+||++++||||.+|++ +|+++|++|+++||      +.+++++++|++++|+++||||||||++|||+++|++|
T Consensus       259 ~~~~VvVYsk~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVFI~Gk~IGG~DdL~~L  338 (362)
T 2jad_A          259 AENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQEL  338 (362)
T ss_dssp             HTCSEEEEECTTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEEETTEEEESHHHHHHH
T ss_pred             ccCCEEEEEcCCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEEECCEEEEChHHHHHh
Confidence            468999999999999999997 89999999876666      34578899999999999999999999999999999999


Q ss_pred             hhcCchHHHHHHhhcc
Q 039225          234 RNSGTFDERFREMLGR  249 (327)
Q Consensus       234 ~esGeL~~~Lk~~~~~  249 (327)
                      +++|+|+++|+.+++.
T Consensus       339 ~~~GeL~~lL~~~~~~  354 (362)
T 2jad_A          339 RETGELEELLEPILAN  354 (362)
T ss_dssp             HHSSHHHHHHHHHC--
T ss_pred             hhCChHHHHHHhCchh
Confidence            9999999999987653

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.73  E-value=1.5e-17  Score=142.46  Aligned_cols=87  Identities=21%  Similarity=0.498  Sum_probs=81.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCc
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGT  238 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGe  238 (327)
                      .++|+||+++|||+|++++.+|++++++|..+||+.+   ++.+++|.+.+|+.+||+||+||++|||++++..++++|+
T Consensus        48 ~~~Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi~G~~igG~d~l~~l~~~g~  127 (146)
T 2ht9_A           48 DNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGK  127 (146)
T ss_dssp             HCSEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEECCEEEeCchHHHHHHHcCh
Confidence            4679999999999999999999999999999999987   6777889999999999999999999999999999999999


Q ss_pred             hHHHHHHhhc
Q 039225          239 FDERFREMLG  248 (327)
Q Consensus       239 L~~~Lk~~~~  248 (327)
                      |.++|+.++.
T Consensus       128 L~~~L~~~g~  137 (146)
T 2ht9_A          128 LLPLVHQCYL  137 (146)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHcCc
Confidence            9999998753

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.70  E-value=6.2e-17  Score=123.20  Aligned_cols=73  Identities=23%  Similarity=0.602  Sum_probs=66.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh--HHHHHHHHhCC-----CCccEEEeCCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP--REKELIRRTGS-----SQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e--~~~eL~~ltG~-----~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ++|+||+++|||+|++++.+|+++|++|+.++|+.+.+  .++++.+++|.     .+||+|||||++|||++++.++++
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i~~~~~   83 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKANAD   83 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHHHHHTHH
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHHHHHHHH
Confidence            56999999999999999999999999999998876543  56789899999     999999999999999999998865

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.61  E-value=4.2e-16  Score=117.83  Aligned_cols=75  Identities=17%  Similarity=0.451  Sum_probs=66.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH-----cCCceEEEEcCCChhHHHHHHHHhC--CCCccEEEeCCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ-----RGLKFVEINVDVFPPREKELIRRTG--SSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e-----lgV~y~eiDVd~d~e~~~eL~~ltG--~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ++|++|+++|||+|++++.+|++     .+++|..+|++.++...+++.+.+|  ..++|+||+||+.|||+++|.++.+
T Consensus         1 m~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~~l~~~~~   80 (85)
T 1ego_A            1 MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVK   80 (85)
T ss_dssp             CEEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHHHHHHHHH
Confidence            36999999999999999999998     7899999999876554567888888  7999999999999999999998876


Q ss_pred             cC
Q 039225          236 SG  237 (327)
Q Consensus       236 sG  237 (327)
                      +|
T Consensus        81 ~~   82 (85)
T 1ego_A           81 EN   82 (85)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.54  E-value=1.3e-14  Score=115.57  Aligned_cols=69  Identities=23%  Similarity=0.431  Sum_probs=60.1

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC-h----hHHHHHHHHhCCCCccEEEeCC-EEeechHH
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF-P----PREKELIRRTGSSQVPQVFLND-KLFGGLVA  229 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d-~----e~~~eL~~ltG~~tVPqIFInG-e~IGG~de  229 (327)
                      .+++|+||+++|||+|++++.+|++++++|+++||+.+ .    +..+++++.+|..+||+|||+| ++|||+++
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~   94 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE   94 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence            34679999999999999999999999999999999973 3    3444556678999999999999 99999974

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.53  E-value=1.2e-14  Score=112.30  Aligned_cols=68  Identities=25%  Similarity=0.384  Sum_probs=60.7

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC-----hhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF-----PPREKELIRRTGSSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d-----~e~~~eL~~ltG~~tVPqIFInGe~IGG~d  228 (327)
                      .|.+|+||+++|||+|++++.+|+++|++|+.+||+..     ++..+++.+.+|..++|+|++||+++||++
T Consensus        10 ~M~~v~ly~~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~   82 (92)
T 3ic4_A           10 GMAEVLMYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN   82 (92)
T ss_dssp             TCSSSEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCC
T ss_pred             CCceEEEEECCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCC
Confidence            45679999999999999999999999999999999842     334578888899999999999999999995

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.53  E-value=1.7e-14  Score=146.07  Aligned_cols=85  Identities=20%  Similarity=0.363  Sum_probs=79.2

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcC
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSG  237 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esG  237 (327)
                      .+++|+||++++||||.+++++|++++++|+++||+.+   ++.++++++++|+++||+||+||++|||++++.++++.|
T Consensus        16 ~~~~v~vy~~~~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~~igG~~~l~~~~~~g   95 (598)
T 2x8g_A           16 DSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSND   95 (598)
T ss_dssp             HHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTEEEECHHHHHHHHHTT
T ss_pred             ccCCEEEEECCCChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCEEEEeeehhhhhhhcC
Confidence            35789999999999999999999999999999999875   677889999999999999999999999999999999999


Q ss_pred             chHHHHHH
Q 039225          238 TFDERFRE  245 (327)
Q Consensus       238 eL~~~Lk~  245 (327)
                      +|+++|..
T Consensus        96 ~L~~~l~~  103 (598)
T 2x8g_A           96 ELAGIVNE  103 (598)
T ss_dssp             CHHHHHHC
T ss_pred             cchhhccc
Confidence            99998853

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.53  E-value=1.9e-14  Score=129.58  Aligned_cols=73  Identities=27%  Similarity=0.507  Sum_probs=66.7

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++|+||++++||+|++|+++|+++|++|+++||+.+++ +++|++.+|+++||+||+||++|||+++|.++.
T Consensus       168 ~~~~i~ly~~~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~-~~~l~~~~g~~~vP~~~~~g~~i~g~~~i~~~l  240 (241)
T 1nm3_A          168 VQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEKYF  240 (241)
T ss_dssp             CCCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTCCSSSCEEEETTEEEESHHHHHHC-
T ss_pred             ccceEEEEECCCChHHHHHHHHHHHcCCceEEEECCCchH-HHHHHHHhCCCCcCEEEECCEEEECHHHHHHHh
Confidence            4578999999999999999999999999999999998765 478999999999999999999999999998764

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.53  E-value=6.5e-14  Score=111.56  Aligned_cols=87  Identities=21%  Similarity=0.424  Sum_probs=78.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh---HHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCc
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP---REKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGT  238 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e---~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGe  238 (327)
                      ...|++|+.+||++|++++.+|++++++|..++|+.++.   .+.++.+.+|..++|++|+||+.+||++++..++..++
T Consensus        19 ~~~vv~f~a~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~~v~~~~~~~~~~~~~~   98 (116)
T 2e7p_A           19 SAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNE   98 (116)
T ss_dssp             SSSEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEECHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEECChHHHHHHHhCCh
Confidence            357999999999999999999999999999999987654   45678888899999999999999999999999999999


Q ss_pred             hHHHHHHhhc
Q 039225          239 FDERFREMLG  248 (327)
Q Consensus       239 L~~~Lk~~~~  248 (327)
                      |.++|++++.
T Consensus        99 l~~~l~~~g~  108 (116)
T 2e7p_A           99 LLPLLQDAAA  108 (116)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHccc
Confidence            9999998764

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.47  E-value=2.1e-13  Score=102.43  Aligned_cols=65  Identities=34%  Similarity=0.632  Sum_probs=59.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d  228 (327)
                      ++|++|+++|||+|++++.+|++++++|..+|++.+++..+++++ +|..++|++|+||+.+||++
T Consensus         1 m~v~~f~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~-~g~~~vP~~~~~g~~~~g~~   65 (81)
T 1h75_A            1 MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCC
T ss_pred             CEEEEEcCCCChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHH-hCCCccCEEEECCEEEecCC
Confidence            369999999999999999999999999999999998887777765 79999999999999999986

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.46  E-value=2.2e-13  Score=100.17  Aligned_cols=64  Identities=19%  Similarity=0.491  Sum_probs=59.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d  228 (327)
                      +|++|+.+||++|++++.+|+++|++|+.+|++.+++..++++ .+|..++|++++||+.+||++
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~-~~~~~~vP~l~~~g~~~~g~~   65 (75)
T 1r7h_A            2 SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVM-ALGYVQAPVVEVDGEHWSGFR   65 (75)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHH-HTTCBCCCEEEETTEEEESCC
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH-HcCCCccCEEEECCeEEcCCC
Confidence            5899999999999999999999999999999999888777775 489999999999999999986

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=113.22  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhc-------cc-cChhhhhhc
Q 039225          272 SMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHH-------FK-CDRMKVRFV  326 (327)
Q Consensus       272 e~DEla~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~-------~~-~~r~~Av~~  326 (327)
                      ...-+..||+.|+++..||||+++|++|++||+|+||||||+.+       .. .+|++||.+
T Consensus        10 at~lw~~ii~~~~~g~~ikdrr~~lk~y~~CF~GsE~VdWL~~~l~~~~~fg~~~sR~eAv~l   72 (105)
T 2ysr_A           10 ATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQL   72 (105)
T ss_dssp             HHHHHHHHHHHHHHSCSCCCCCCSSSSCSSCEEHHHHHHHHHHHHHHSSSSTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcceeeeCCEECCccccchHHHHHHHHhcccccccCccCCHHHHHHH
Confidence            45678999999999999999999999999999999999999998       44 899999976

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.31  E-value=1.9e-12  Score=97.86  Aligned_cols=72  Identities=11%  Similarity=0.247  Sum_probs=57.9

Q ss_pred             CcEEEEEcCCChhHHHHHH----HHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE--EeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRR----FFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK--LFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~----iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe--~IGG~deL~~L~e  235 (327)
                      .+|++|+++|||+|++++.    ++++++++|+.++|+.+.+.. ++.+.+|..++|+|++||+  ++|+..+..+|.+
T Consensus         2 ~~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~gv~~vPt~~i~g~~~~~G~~~~~~~l~~   79 (80)
T 2k8s_A            2 ASKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARI-AEAEKAGVKSVPALVIDGAAFHINFGAGIDDLKG   79 (80)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTH-HHHHHHTCCEEEEEEETTEEEEEEEEEEHHHHCC
T ss_pred             cceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhH-HHHHHcCCCcCCEEEECCEEEEeccCcCHHHhhc
Confidence            3599999999999999999    556678889999999753333 3445679999999999999  8898776666643

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.23  E-value=1.1e-11  Score=98.64  Aligned_cols=75  Identities=13%  Similarity=0.428  Sum_probs=59.9

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHH--HcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEE--eechHHHHHhhhcC
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFK--QRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL--FGGLVALNSLRNSG  237 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~--elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~--IGG~deL~~L~esG  237 (327)
                      +..|++|+++||++|++++.+|+  ..+++|.++||+. ++. .++.+.+| .++|+||+||+.  +||++.       .
T Consensus        16 ~~~v~~f~~~~C~~C~~~~~~L~~l~~~i~~~~vdi~~-~~~-~el~~~~g-~~vP~l~~~g~~~~~~g~~~-------~   85 (100)
T 1wjk_A           16 LPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITL-PEN-STWYERYK-FDIPVFHLNGQFLMMHRVNT-------S   85 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTS-STT-HHHHHHSS-SSCSEEEESSSEEEESSCCH-------H
T ss_pred             CCEEEEEeCCCCcchHHHHHHHHHhhhCCeEEEEECCC-cch-HHHHHHHC-CCCCEEEECCEEEEecCCCH-------H
Confidence            45699999999999999999999  5679999999993 222 56777889 999999999998  788752       2


Q ss_pred             chHHHHHHh
Q 039225          238 TFDERFREM  246 (327)
Q Consensus       238 eL~~~Lk~~  246 (327)
                      +|.++|+..
T Consensus        86 ~l~~~l~~~   94 (100)
T 1wjk_A           86 KLEKQLRKL   94 (100)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHHH
Confidence            456666543

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.23  E-value=2.5e-11  Score=95.37  Aligned_cols=59  Identities=17%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCc-eEEEEcCCChhHHHHHHHHhCCCCccEEE-eCCEEeech
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLK-FVEINVDVFPPREKELIRRTGSSQVPQVF-LNDKLFGGL  227 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~-y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-InGe~IGG~  227 (327)
                      +|++|+++||++|+.++.+|++.+++ |.++||+.+++    +.+.+|.+ ||+|+ +||+.++|.
T Consensus         2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~~~~vdid~~~~----l~~~~g~~-vPtl~~~~G~~v~g~   62 (87)
T 1ttz_A            2 ALTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAA----LESAYGLR-VPVLRDPMGRELDWP   62 (87)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHH----HHHHHTTT-CSEEECTTCCEEESC
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHhheEEEECCCCHH----HHHHhCCC-cCeEEEECCEEEeCC
Confidence            69999999999999999999999997 99999998876    44456777 99999 899999654

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31

Probab=99.16  E-value=1.5e-11  Score=100.63  Aligned_cols=54  Identities=26%  Similarity=0.380  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHh---ccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          273 MDEMLLSVKLLR---QRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       273 ~DEla~lV~~l~---~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      ..+++.||++|+   .+..||||++++++|++||+|+|+||||+++.+  .+|+||+.+
T Consensus        18 ~~~l~~iv~~M~~p~~Gv~i~dr~~~~~~~~~~F~G~dlVdWL~~~~~~~~~r~eAv~l   76 (105)
T 1fsh_A           18 KSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKY   76 (105)
T ss_dssp             SSCHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCCceeEEeEeCCEECCceeEcHHHHHHHHHhCcCCCCHHHHHHH
Confidence            457999999995   467899999999999999999999999999985  899999975

>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31

Probab=99.14  E-value=2.2e-11  Score=101.98  Aligned_cols=52  Identities=17%  Similarity=0.166  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          275 EMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       275 Ela~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      .|+.|+..|++   +..|++|++++++|++||+|+|+||||+++.. .+|.|||.+
T Consensus         7 ~l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~~sR~eAv~l   62 (120)
T 1v3f_A            7 GLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTL   62 (120)
T ss_dssp             HHHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHH
T ss_pred             cHHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCCCCHHHHHHH
Confidence            69999999965   45689999999999999999999999999987 799999975

>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A

Probab=99.11  E-value=2.4e-11  Score=100.42  Aligned_cols=53  Identities=13%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          274 DEMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       274 DEla~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      -+|+.||+.|++   ++.+++|++++++|++||+|+|+||||+++.. .+|+|||.+
T Consensus         6 ~~l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~~~R~EAv~l   62 (109)
T 1uhw_A            6 SGLGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMI   62 (109)
T ss_dssp             TTHHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSSSSHHHHHHH
T ss_pred             cCHHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCCCCHHHHHHH
Confidence            379999999964   45589999999999999999999999999997 699999975

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.09  E-value=1.6e-10  Score=94.70  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=51.4

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHH----cCCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQ----RGLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~e----lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      .+..|++|+++||++|++++.+|++    ++++|+++||+.++++    .+.+|.. ||+|  |+||+.+
T Consensus        28 ~m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l----~~~ygv~-VP~l~~~~dG~~v   92 (107)
T 2fgx_A           28 EPRKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHL----TRLYNDR-VPVLFAVNEDKEL   92 (107)
T ss_dssp             CCCCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHH----HHHSTTS-CSEEEETTTTEEE
T ss_pred             CccEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHH----HHHhCCC-CceEEEEECCEEE
Confidence            3567999999999999999999998    7999999999988764    4456775 9999  9999987

>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31

Probab=98.96  E-value=2.3e-10  Score=96.84  Aligned_cols=53  Identities=15%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          274 DEMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       274 DEla~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      -.|+.||+.|++   ++.+++|++++++|++||+|+|+||||+++.. .+|+||+.+
T Consensus        16 ~~l~~Lv~~Mqd~~~GV~~~~r~~~~~~~~~cF~GsdlVdWLl~~~~~~sR~EAv~l   72 (127)
T 2cso_A           16 IDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMI   72 (127)
T ss_dssp             CCHHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSCSSHHHHHHH
T ss_pred             cCHHHHHHHHhCCCCCceeeeEEeccEEecceeechHHHHHHHHcCCCCCHHHHHHH
Confidence            379999999975   55589999999999999999999999999987 899999875

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=98.92  E-value=2.5e-09  Score=100.74  Aligned_cols=80  Identities=19%  Similarity=0.354  Sum_probs=58.7

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc----CC---ceEEEEcC----CCh-------hHHHHHHHHhCCCCc--cEEEeCC
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR----GL---KFVEINVD----VFP-------PREKELIRRTGSSQV--PQVFLND  221 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el----gV---~y~eiDVd----~d~-------e~~~eL~~ltG~~tV--PqIFInG  221 (327)
                      +..|+||++++||||.+|+++|+++    ++   .|+..+++    .|+       +.++++.+.+|.++|  |||||||
T Consensus        43 ~~~VelyTs~gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~Ing  122 (270)
T 2axo_A           43 KGVVELFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAILNG  122 (270)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEETT
T ss_pred             CcEEEEEeCCCCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEECC
Confidence            3579999999999999999999998    76   45422222    332       234457777899999  9999999


Q ss_pred             E-EeechHHHHHhhhcCchHHHHHHhhc
Q 039225          222 K-LFGGLVALNSLRNSGTFDERFREMLG  248 (327)
Q Consensus       222 e-~IGG~deL~~L~esGeL~~~Lk~~~~  248 (327)
                      + ++||++.       .+|.+.|.++.+
T Consensus       123 ~~~v~G~d~-------~~l~~~l~~~~~  143 (270)
T 2axo_A          123 RDHVKGADV-------RGIYDRLDAFKR  143 (270)
T ss_dssp             TEEEETTCH-------HHHHHHHHHHHH
T ss_pred             EEeecCCCH-------HHHHHHHHHhhc
Confidence            9 8999973       245666655543

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=98.86  E-value=2.7e-09  Score=87.22  Aligned_cols=65  Identities=9%  Similarity=0.202  Sum_probs=52.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhC------------------------------
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTG------------------------------  210 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG------------------------------  210 (327)
                      .|+||++++|++|++|+++|++.|++|+++||..++   +..+++.+.+|                              
T Consensus         1 ~i~iY~~~~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~~~   80 (114)
T 1rw1_A            1 TYVLYGIKACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIE   80 (114)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhCChHHhccCCcHhHHhcCccccccCCHHHHHH
Confidence            389999999999999999999999999999998765   33334444455                              


Q ss_pred             -------CCCccEEEeCCEEeechH
Q 039225          211 -------SSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       211 -------~~tVPqIFInGe~IGG~d  228 (327)
                             ....|.|..+|+.+-|++
T Consensus        81 ~l~~~p~likrPiv~~~~~~~vGf~  105 (114)
T 1rw1_A           81 LMLAQPSMIKRPVLELGGRTLVGFK  105 (114)
T ss_dssp             HHHHCGGGBCSCEEECSSCEEESCC
T ss_pred             HHHhChhheeCcEEEECCEEEEeCC
Confidence                   346899999998888886

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=98.86  E-value=4.1e-09  Score=88.23  Aligned_cols=46  Identities=20%  Similarity=0.465  Sum_probs=40.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT  209 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt  209 (327)
                      .|+||++++|++|++|+++|+++|++|+++||..++..+++|+++.
T Consensus         2 mi~lY~~~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l   47 (132)
T 1z3e_A            2 MVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL   47 (132)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHH
Confidence            3899999999999999999999999999999998876666666554

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=98.84  E-value=3.7e-09  Score=87.17  Aligned_cols=65  Identities=12%  Similarity=0.274  Sum_probs=53.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhC------------------------------
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTG------------------------------  210 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG------------------------------  210 (327)
                      .|+||++++|++|++|+++|++.|++|+++||..++   +..+++.+.+|                              
T Consensus         6 ~i~iY~~~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~~~   85 (120)
T 2kok_A            6 SVTIYGIKNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVDAASARE   85 (120)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCCHHHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCCHHHHHH
Confidence            699999999999999999999999999999998655   33344444556                              


Q ss_pred             -------CCCccEEEeCCEEeechH
Q 039225          211 -------SSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       211 -------~~tVPqIFInGe~IGG~d  228 (327)
                             ....|.|..+|+.+-|++
T Consensus        86 ~l~~~p~likrPiv~~~~~~~vGf~  110 (120)
T 2kok_A           86 LMLAQPSMVKRPVLERDGKLMVGFK  110 (120)
T ss_dssp             HHHHCGGGBCSSEEEETTEEEECCC
T ss_pred             HHHhCcccEECCEEEECCEEEEeCC
Confidence                   346899999999888886

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}

Probab=98.74  E-value=3.3e-09  Score=104.25  Aligned_cols=52  Identities=31%  Similarity=0.432  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          275 EMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       275 Ela~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      +|+.||+.|++   +..|+||++++++|++||+|+||||||+++.+  .+|+||+.+
T Consensus         8 ~l~~i~~~M~~~~~Gl~i~dr~~~~~~~~~~F~G~elVdWL~~~~~~~~~R~eA~~~   64 (385)
T 3ml6_A            8 DMASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEGFPERREARKY   64 (385)
T ss_dssp             CHHHHHHHHHSTTSSSCCEEECCSSCCEEEEEEHHHHHHHHHHTCCSCSSHHHHHHH
T ss_pred             CHHHHHHHhhCCCCCceeEeeEECcEECCCeEEhHHHHHHHHHccCCCCCHHHHHHH
Confidence            68999999965   66799999999999999999999999999976  899999874

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.60  E-value=1.8e-08  Score=100.25  Aligned_cols=55  Identities=9%  Similarity=0.250  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccccChhhhhhc
Q 039225          272 SMDEMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKCDRMKVRFV  326 (327)
Q Consensus       272 e~DEla~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~~~r~~Av~~  326 (327)
                      ....|+.||..|++   |+.|++|++++++|++||+|+++|+||+++...+++||+.+
T Consensus        18 ~~~~~e~lv~~M~~~~~Gv~i~~~~~~~~~~p~~F~Gsd~V~WL~~~~~~~~~EA~~l   75 (424)
T 2pbi_A           18 FLQKIEALVKDMQNPETGVRMHNQRVLVTSVPHAMTGGDVLQWITQRLWISNLEAQNL   75 (424)
T ss_dssp             HHHHHHHHHHHHTCTTTSCCCCCCSSCCCSSCCCEEHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hhhhHHHHHHHHhCCCCCCCccceeecceeCCCccccHHHHHHHHHcCCCChHHHHHH
Confidence            46799999999954   77899999999999999999999999999999999999875

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.58  E-value=3.9e-08  Score=72.78  Aligned_cols=61  Identities=18%  Similarity=0.300  Sum_probs=49.9

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE--Eeec
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK--LFGG  226 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe--~IGG  226 (327)
                      +..|++|+.+||++|+++...|++.      ++.+..+|++.+++    +.+.+|..++|++++||+  +.|.
T Consensus         2 m~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~G~~~~~G~   70 (85)
T 1nho_A            2 VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYGLMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CCCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTCSSCSSEEEETTTEEEECS
T ss_pred             eEEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhCCceeeCEEEECCEEEEccC
Confidence            4578999999999999999888763      58899999987765    444578899999999998  4554

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.52  E-value=7.4e-08  Score=77.23  Aligned_cols=70  Identities=13%  Similarity=0.254  Sum_probs=55.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh--HHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP--REKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e--~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      ..|+.|+.+||++|++.+..|.++.-.|..+|++.+..  ...++.+.+|..++|+++|||+.+.|..+..+
T Consensus        14 ~~vV~F~A~WC~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i~G~~~~G~~~~~~   85 (106)
T 3kp8_A           14 IGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRTYTGVRSLEA   85 (106)
T ss_dssp             HTCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEETTEEEESCCCHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHcCCeEeCEEEECCEEecCCCCHHH
Confidence            34889999999999999999999887777888874422  23457777899999999999998877654433

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=98.47  E-value=5.4e-08  Score=82.97  Aligned_cols=53  Identities=13%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCcc
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVP  215 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVP  215 (327)
                      ..|+||++++|++|++|+++|++.|++|+++|+..++..+++|.++.+...+|
T Consensus         2 ~~itiY~~p~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~~g~p   54 (141)
T 1s3c_A            2 SNITIYHNPASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGIS   54 (141)
T ss_dssp             -CCEEECCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHhcccCCC
Confidence            35899999999999999999999999999999999887777887776655565

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=98.45  E-value=1.8e-07  Score=77.33  Aligned_cols=51  Identities=20%  Similarity=0.455  Sum_probs=44.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCcc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVP  215 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVP  215 (327)
                      |+||++++|++|++|+++|++.|++|+++|+..++..+++|+.+.+...+|
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~~~~~~   52 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILSYTENG   52 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHHCSST
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHhhcCCC
Confidence            889999999999999999999999999999999887788888876544433

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.40  E-value=1e-07  Score=70.50  Aligned_cols=57  Identities=25%  Similarity=0.443  Sum_probs=46.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL  223 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~  223 (327)
                      ..|++|+.+||++|+++...|++.      ++.+..+|++.+++    +.+.+|..++|++++||+.
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~G~~   66 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEYGIMAVPTIVINGDV   66 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTSTTTCCSSEEEETTEE
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHH----HHHHCCCcccCEEEECCEE
Confidence            358889999999999999888763      57788899987764    3445688999999999984

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=98.38  E-value=1.5e-07  Score=78.13  Aligned_cols=53  Identities=11%  Similarity=0.179  Sum_probs=44.4

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCc
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQV  214 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tV  214 (327)
                      |..|+||++++|++|++|+++|++.|++|+++||..++..+++|..+.+...+
T Consensus         4 M~~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~   56 (121)
T 3rdw_A            4 MKDVTIYHNPRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGF   56 (121)
T ss_dssp             --CCEEECCTTCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcCC
Confidence            44599999999999999999999999999999999988777777776544433

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=98.38  E-value=1.9e-07  Score=77.32  Aligned_cols=48  Identities=13%  Similarity=0.294  Sum_probs=42.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG  210 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG  210 (327)
                      +.|+||++++|++|++|+++|++.|++|+++||..++..+++|..+.+
T Consensus         4 M~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~   51 (120)
T 3gkx_A            4 MKTLFLQYPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIP   51 (120)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHH
T ss_pred             cEEEEEECCCChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHH
Confidence            459999999999999999999999999999999998877777766654

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=98.36  E-value=4.1e-07  Score=75.35  Aligned_cols=51  Identities=14%  Similarity=0.368  Sum_probs=44.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCc
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQV  214 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tV  214 (327)
                      .|+||++++|++|++|+++|++.|++|+++|+..++..+++|..+.+...+
T Consensus         4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~   54 (120)
T 3fz4_A            4 MLTFYEYPKCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLENSGL   54 (120)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHHHSCC
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHHHcCC
Confidence            489999999999999999999999999999999988777777777654443

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.31  E-value=3.1e-07  Score=87.11  Aligned_cols=72  Identities=13%  Similarity=0.237  Sum_probs=57.2

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +..|++|+.+|||+|++++.+|++..-++..+|++.+.  +...++.+.+|.+++|++|+||+.+.|..+..++
T Consensus       198 ~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i~G~~~~G~~~~~~L  271 (291)
T 3kp9_A          198 QIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRTYTGVRSLEAL  271 (291)
T ss_dssp             HTTCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEEEETTEEEESCCCHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcCCcccCeEEECCEEecCCCCHHHH
Confidence            35689999999999999999999987666677777422  2244677778999999999999999888765544

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.18  E-value=4.3e-06  Score=83.69  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeec-h---HHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGG-L---VALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG-~---deL~~L  233 (327)
                      ..|++|+.+||++|+.+..+|+++     ++.+..+|++..++    +.+.+|..++|++|+||+.++. .   +++.++
T Consensus       119 ~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~----~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~  194 (521)
T 1hyu_A          119 FEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITERNVMGVPAVFVNGKEFGQGRMTLTEIVAK  194 (521)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTTCCSSSEEEETTEEEEESCCCHHHHHHH
T ss_pred             cceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHH----HHHHhCCCccCEEEECCEEEecCCCCHHHHHHH
Confidence            468999999999999998888754     46677788875554    6667899999999999998853 2   455555


Q ss_pred             hhcCch
Q 039225          234 RNSGTF  239 (327)
Q Consensus       234 ~esGeL  239 (327)
                      .+++.+
T Consensus       195 l~~~~~  200 (521)
T 1hyu_A          195 VDTGAE  200 (521)
T ss_dssp             HCCSSC
T ss_pred             Hhhccc
Confidence            555543

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=98.18  E-value=3.2e-07  Score=75.90  Aligned_cols=46  Identities=15%  Similarity=0.264  Sum_probs=40.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT  209 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt  209 (327)
                      .|+||++++|++|++|+++|++.|++|+++|+..++..+++|..+.
T Consensus         5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l   50 (119)
T 3f0i_A            5 SVVIYHNPKCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLY   50 (119)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHH
Confidence            5999999999999999999999999999999988766666666554

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.15  E-value=5.4e-06  Score=65.10  Aligned_cols=59  Identities=19%  Similarity=0.504  Sum_probs=47.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      ..|+.|+.+||++|+++...|+++     ++.+..+|++..++    +.+.+|..++|++++  +|+.++
T Consensus        21 ~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~v~   86 (110)
T 2l6c_A           21 DAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPE----LMKELGFERVPTLVFIRDGKVAK   86 (110)
T ss_dssp             EEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHH----HHHHTTCCSSCEEEEEESSSEEE
T ss_pred             CEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHH----HHHHcCCcccCEEEEEECCEEEE
Confidence            347779999999999999998876     36678888875543    556678999999988  998776

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.15  E-value=3.7e-06  Score=76.29  Aligned_cols=57  Identities=16%  Similarity=0.223  Sum_probs=46.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH----------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ----------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e----------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I  224 (327)
                      .|++|+.+||++|+++...|++          .++.+..+|++.+++    +.+.+|..++|++++||+.+
T Consensus       141 ~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~V~~vPt~~i~G~~~  207 (243)
T 2hls_A          141 HIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD----IADKYGVMSVPSIAINGYLV  207 (243)
T ss_dssp             EEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHH----HHHHTTCCSSSEEEETTEEE
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHH----HHHHcCCeeeCeEEECCEEE
Confidence            4677999999999999998875          357888999987664    44567899999999999843

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.08  E-value=6.3e-06  Score=65.53  Aligned_cols=58  Identities=21%  Similarity=0.470  Sum_probs=46.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||++|+++...|.++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        33 vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   97 (114)
T 2oe3_A           33 LVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPD----IAKECEVTAMPTFVLGKDGQLIG   97 (114)
T ss_dssp             EEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSBSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHCCCCcccEEEEEeCCeEEE
Confidence            36678899999999999888765     58888899987654    555678899999977  888654

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.07  E-value=1.1e-05  Score=63.67  Aligned_cols=59  Identities=17%  Similarity=0.370  Sum_probs=46.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|++....|.++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        36 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~  101 (122)
T 2vlu_A           36 LVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKP----IAEQFSVEAMPTFLFMKEGDVKD  101 (122)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHH----HHHHcCCCcccEEEEEeCCEEEE
Confidence            457778999999999998888753     47788888887654    555678899999877  888654

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.07  E-value=1.3e-05  Score=62.33  Aligned_cols=59  Identities=19%  Similarity=0.374  Sum_probs=46.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+++...|+++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        30 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   95 (118)
T 2vm1_A           30 LVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKD----VAEAYNVEAMPTFLFIKDGEKVD   95 (118)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSBSEEEEEETTEEEE
T ss_pred             EEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHH----HHHHcCCCcCcEEEEEeCCeEEE
Confidence            456778999999999998888754     57788888886543    555678899999977  898654

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=98.06  E-value=1e-05  Score=70.42  Aligned_cols=70  Identities=11%  Similarity=0.170  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L~  234 (327)
                      ++++||+.++||+|.+++-+|..+|++|+.++|+.....  ...++++..+||++. .||..+.+...|.+..
T Consensus         2 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~--~~~~~~p~~~vP~l~~~~g~~l~eS~aI~~yL   72 (218)
T 3ir4_A            2 NAMKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEA--TPTRMIGQKMVPILQKDDSRYLPESMDIVHYV   72 (218)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCCH--HHHHHHSSSCSCEEECTTSCEEECHHHHHHHH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCceEEEECCCcchh--hhhhcCCCceeeeEEEeCCeEeeCHHHHHHHH
Confidence            458899999999999999999999999999999875432  235678999999999 8898888887776543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.05  E-value=1.8e-05  Score=65.92  Aligned_cols=79  Identities=13%  Similarity=0.256  Sum_probs=56.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~e  235 (327)
                      .-|+.|+.+||++|+++...|.++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++.+...    .
T Consensus        34 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~G~----~  105 (153)
T 2wz9_A           34 LLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPE----VSEKYEISSVPTFLFFKNSQKIDRLDGA----H  105 (153)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEEEEESS----C
T ss_pred             eEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEEEEeCC----C
Confidence            346778899999999998888765     68889999987654    555678899999987  99875432221    1


Q ss_pred             cCchHHHHHHhhcc
Q 039225          236 SGTFDERFREMLGR  249 (327)
Q Consensus       236 sGeL~~~Lk~~~~~  249 (327)
                      ..+|.++|++....
T Consensus       106 ~~~l~~~i~~~l~~  119 (153)
T 2wz9_A          106 APELTKKVQRHASS  119 (153)
T ss_dssp             HHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHhcc
Confidence            12467777776543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.03  E-value=1.8e-05  Score=59.57  Aligned_cols=59  Identities=19%  Similarity=0.326  Sum_probs=46.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|+++...|+++     ++.+..+|++.+++    +.+.+|..++|++++  +|+.++
T Consensus        18 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   83 (104)
T 2e0q_A           18 IAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPD----IAARYGVMSLPTVIFFKDGEPVD   83 (104)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSCEEEEEETTEEEE
T ss_pred             cEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHH----HHHhCCccccCEEEEEECCeEhh
Confidence            346678899999999998887653     47788888887654    555678889999988  898664

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.03  E-value=1.6e-05  Score=60.49  Aligned_cols=60  Identities=20%  Similarity=0.408  Sum_probs=47.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeec
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGG  226 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG  226 (327)
                      .-++.|+.+||++|+++...|.++     ++.+..+|++..++    +.+..|..++|++++  +|+.++.
T Consensus        22 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~   88 (105)
T 3m9j_A           22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASESEVKSMPTFQFFKKGQKVGE   88 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHH----HHHHTTCCBSSEEEEEETTEEEEE
T ss_pred             eEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHH----HHHHcCCCcCcEEEEEECCeEEEE
Confidence            446679999999999999888764     57788888887654    555678899999987  8887653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.02  E-value=1.8e-05  Score=61.07  Aligned_cols=59  Identities=15%  Similarity=0.381  Sum_probs=45.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|++....|.++      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        26 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   92 (112)
T 1ep7_A           26 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAAGITAMPTFHVYKDGVKAD   92 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHHTCCBSSEEEEEETTEEEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHH----HHHHcCCCcccEEEEEECCeEEE
Confidence            447778899999999998887654      47788888876554    555678899999877  888654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.02  E-value=2.8e-05  Score=61.89  Aligned_cols=84  Identities=11%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe---CCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL---NDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI---nGe~IGG~deL~~L  233 (327)
                      .-|+.|+.+||++|++....|.++      ++.+..+|++.+..  .++.+.+|...+|++++   +|+.++-+...   
T Consensus        28 ~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~--~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~---  102 (126)
T 2l57_A           28 PTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKN--IDLAYKYDANIVPTTVFLDKEGNKFYVHQGL---  102 (126)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHH--HHHHHHTTCCSSSEEEEECTTCCEEEEEESC---
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCch--HHHHHHcCCcceeEEEEECCCCCEEEEecCC---
Confidence            446778999999999998877652      56777788322222  35667789999999988   88865422111   


Q ss_pred             hhcCchHHHHHHhhccCC
Q 039225          234 RNSGTFDERFREMLGRKC  251 (327)
Q Consensus       234 ~esGeL~~~Lk~~~~~~~  251 (327)
                      ....+|.++|+.......
T Consensus       103 ~~~~~l~~~l~~~~~~~~  120 (126)
T 2l57_A          103 MRKNNIETILNSLGVKEG  120 (126)
T ss_dssp             CCHHHHHHHHHHHCCCCC
T ss_pred             CCHHHHHHHHHHHhcccc
Confidence            112346677777655433

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.02  E-value=1.8e-05  Score=60.92  Aligned_cols=60  Identities=27%  Similarity=0.499  Sum_probs=46.6

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      +.-++.|+.+||++|+++...|.++      ++.+..+|++..++    +.+.+|...+|++++  +|+.++
T Consensus        23 ~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~~   90 (111)
T 3gnj_A           23 KACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT----LFQRFSLKGVPQILYFKDGEYKG   90 (111)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHTTCCSSCEEEEEETTEEEE
T ss_pred             CEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChh----HHHhcCCCcCCEEEEEECCEEEE
Confidence            3447779999999999998888654      37788888887654    556678899999866  898664

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.01  E-value=2.2e-05  Score=60.56  Aligned_cols=59  Identities=17%  Similarity=0.258  Sum_probs=46.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|+++...|.++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        23 ~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   88 (107)
T 1gh2_A           23 LAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG----TAATNNISATPTFQFFRNKVRID   88 (107)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHhcCCCcccEEEEEECCeEEE
Confidence            446778999999999999888764     57888899987654    556678899998854  888654

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.00  E-value=1.6e-05  Score=62.17  Aligned_cols=58  Identities=17%  Similarity=0.398  Sum_probs=45.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||++|+++...|+++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.+.
T Consensus        29 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   93 (112)
T 1syr_A           29 VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKENITSMPTFKVYKNGSSVD   93 (112)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHH----HHHHcCCCcccEEEEEECCcEEE
Confidence            36668899999999999888763     57888888886653    555678899999877  888653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.00  E-value=2e-05  Score=61.75  Aligned_cols=59  Identities=19%  Similarity=0.352  Sum_probs=46.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|++....|.++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.+.
T Consensus        26 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   91 (109)
T 3f3q_A           26 LVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD----VAQKNEVSAMPTLLLFKNGKEVA   91 (109)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcCCCccCEEEEEECCEEEE
Confidence            346668899999999999888764     57788888886654    556678899999976  888665

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=97.99  E-value=2.1e-05  Score=61.76  Aligned_cols=59  Identities=24%  Similarity=0.407  Sum_probs=46.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+++...|+++    ++.+..+|++.+++    +.+.+|..++|++++  +|+.++
T Consensus        35 ~~vv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   99 (117)
T 2xc2_A           35 LVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEE----TARKYNISAMPTFIAIKNGEKVG   99 (117)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHTTSSSEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCCCHhHHHHhHHHHHHHHHcCcEEEEEECCccHH----HHHHcCCCccceEEEEeCCcEEE
Confidence            346778999999999999888765    56778888876543    555678899999887  898654

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=97.99  E-value=2.5e-05  Score=59.22  Aligned_cols=58  Identities=14%  Similarity=0.260  Sum_probs=45.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|+++...|+++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.+.
T Consensus        22 ~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   86 (104)
T 2vim_A           22 IVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEE----AAAKYSVTAMPTFVFIKDGKEVD   86 (104)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHH----HHHHcCCccccEEEEEeCCcEEE
Confidence            45668899999999998888764     67888899887654    555678889999877  888654

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.98  E-value=1.7e-05  Score=63.98  Aligned_cols=58  Identities=17%  Similarity=0.418  Sum_probs=45.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||++|++....|+++     ++.+..+|++.+.+    +.+.+|...+|++++  +|+.++
T Consensus        41 vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~  105 (124)
T 1xfl_A           41 VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS----VASDWAIQAMPTFMFLKEGKILD  105 (124)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHHcCCCccCEEEEEECCEEEE
Confidence            35668899999999998888764     56677788876543    556678899999987  898654

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.97  E-value=2.4e-05  Score=63.31  Aligned_cols=79  Identities=18%  Similarity=0.320  Sum_probs=54.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~e  235 (327)
                      .-|+.|+.+||++|++....|+++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++-+...    .
T Consensus        48 ~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~~~~G~----~  119 (139)
T 3d22_A           48 IVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSD----FSASWEIKATPTFFFLRDGQQVDKLVGA----N  119 (139)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCEESEEEEEETTEEEEEEESC----C
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHH----HHHHcCCCcccEEEEEcCCeEEEEEeCC----C
Confidence            346678899999999998888764     57888899886654    556678899998765  78765422111    0


Q ss_pred             cCchHHHHHHhhcc
Q 039225          236 SGTFDERFREMLGR  249 (327)
Q Consensus       236 sGeL~~~Lk~~~~~  249 (327)
                      ..+|.++|+.....
T Consensus       120 ~~~l~~~l~~~~~~  133 (139)
T 3d22_A          120 KPELHKKITAILDS  133 (139)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc
Confidence            12456666665543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.96  E-value=2.1e-05  Score=60.68  Aligned_cols=75  Identities=16%  Similarity=0.341  Sum_probs=50.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhhhc
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLRNS  236 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~es  236 (327)
                      -|+.|+.+||++|+++...|+++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++.....    ..
T Consensus        29 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~~~~g~----~~  100 (113)
T 1ti3_A           29 IVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKA----VAEEWNVEAMPTFIFLKDGKLVDKTVGA----DK  100 (113)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHH----HHHHHHCSSTTEEEEEETTEEEEEEECC----CT
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHH----HHHhCCCCcccEEEEEeCCEEEEEEecC----CH
Confidence            35568899999999998877654     56778888886654    444557788999877  89865432211    12


Q ss_pred             CchHHHHHHh
Q 039225          237 GTFDERFREM  246 (327)
Q Consensus       237 GeL~~~Lk~~  246 (327)
                      .+|.++|++.
T Consensus       101 ~~l~~~l~~~  110 (113)
T 1ti3_A          101 DGLPTLVAKH  110 (113)
T ss_dssp             THHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            3455666554

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=97.94  E-value=2.1e-05  Score=62.35  Aligned_cols=59  Identities=19%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+++...|.++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.+.
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   98 (116)
T 3qfa_C           33 LVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASECEVKSMPTFQFFKKGQKVG   98 (116)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHH----HHHHTTCCSSSEEEEESSSSEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcCCccccEEEEEeCCeEEE
Confidence            346668899999999999888775     46678888886554    556678999999877  787654

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=97.93  E-value=2.6e-05  Score=63.30  Aligned_cols=59  Identities=19%  Similarity=0.493  Sum_probs=47.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+++...|.++     ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        39 ~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~i~~~G~~~~  104 (125)
T 1r26_A           39 LTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKCRVLQLPTFIIARSGKMLG  104 (125)
T ss_dssp             CEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcCCCcccEEEEEeCCeEEE
Confidence            457778999999999998888764     58888899987654    555678899999987  898654

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.92  E-value=1.7e-05  Score=57.61  Aligned_cols=56  Identities=14%  Similarity=0.342  Sum_probs=41.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH----cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ----RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e----lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG  225 (327)
                      +|.+|+ +||++|+.+...|++    ++..+..+.|+ +.    ++.+.+|..++|++++||+.+.
T Consensus         3 ~v~f~a-~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-~~----~~~~~~~v~~~Pt~~~~G~~~~   62 (77)
T 1ilo_A            3 KIQIYG-TGCANCQMLEKNAREAVKELGIDAEFEKIK-EM----DQILEAGLTALPGLAVDGELKI   62 (77)
T ss_dssp             EEEEEC-SSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-SH----HHHHHHTCSSSSCEEETTEEEE
T ss_pred             EEEEEc-CCChhHHHHHHHHHHHHHHcCCceEEEEec-CH----HHHHHCCCCcCCEEEECCEEEE
Confidence            355555 799999998877654    45567777776 33    4556679999999999998653

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=97.91  E-value=2.6e-05  Score=69.94  Aligned_cols=71  Identities=23%  Similarity=0.381  Sum_probs=52.8

Q ss_pred             CCcEEEE--------EcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFF--------SRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLY--------sk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +..++||        +.++||+|.+++-+|...|++|+.+.|+.. ....++.+++...+||+|..||..|.....|.+.
T Consensus        11 ~~~i~ly~~~~~~~~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y   89 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMT-RKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEF   89 (247)
T ss_dssp             CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECCC-----------CCSSSCEEEETTEEECCHHHHHHH
T ss_pred             CCCEEEEEecCcccccCCCChhHHHHHHHHHHcCCCcEEEEcCcc-cchHHHHHhCCCCCCCEEEECCEeccCHHHHHHH
Confidence            4569999        889999999999999999999999888754 2334566777889999999999988777766554

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.90  E-value=6e-05  Score=57.37  Aligned_cols=58  Identities=16%  Similarity=0.296  Sum_probs=45.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||++|+++...|.+.      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        23 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   88 (107)
T 2i4a_A           23 VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE----TPNAYQVRSIPTLMLVRDGKVID   88 (107)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH----HHHhcCCCccCEEEEEeCCEEEE
Confidence            46678899999999998887653      46778888887664    455678899999988  998764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.90  E-value=3.3e-05  Score=59.23  Aligned_cols=58  Identities=19%  Similarity=0.374  Sum_probs=44.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|+++...|.+.      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        23 ~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   88 (108)
T 2trx_A           23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAA   88 (108)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH----HHHHcCCcccCEEEEEeCCEEEE
Confidence            46678899999999998877653      36677888887665    445678899999988  898643

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.90  E-value=3.2e-05  Score=60.02  Aligned_cols=59  Identities=19%  Similarity=0.351  Sum_probs=43.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|+++...|.++       ++.+..+|++.+++    +.+.+|..++|++++  +|+.++
T Consensus        23 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   90 (112)
T 3d6i_A           23 LIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSE----ISELFEISAVPYFIIIHKGTILK   90 (112)
T ss_dssp             CEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHH----HHHHcCCCcccEEEEEECCEEEE
Confidence            346678899999999998887632       57788888887654    555678899999976  898765

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.89  E-value=4e-05  Score=59.13  Aligned_cols=59  Identities=20%  Similarity=0.440  Sum_probs=46.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|++....|.++      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        27 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   93 (115)
T 1thx_A           27 PVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKYKVEGVPALRLVKGEQILD   93 (115)
T ss_dssp             CEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             eEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH----HHHHcCCCceeEEEEEcCCEEEE
Confidence            447778899999999998877653      37788888887654    555678899999988  898654

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=97.89  E-value=2.9e-05  Score=67.26  Aligned_cols=69  Identities=17%  Similarity=0.335  Sum_probs=56.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      -++||+.+.||||++|+-+|.++|++|+.+.|+... ..+++.+++...+||++..||..|.....|.+.
T Consensus         3 Mm~LY~~~~sP~~~rvr~~L~e~gi~~e~~~v~~~~-~~~~~~~~nP~g~vPvL~~~~~~l~ES~aI~~y   71 (210)
T 4hoj_A            3 MMTLYSGITCPFSHRCRFVLYEKGMDFEIKDIDIYN-KPEDLAVMNPYNQVPVLVERDLVLHESNIINEY   71 (210)
T ss_dssp             -CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             eEEEecCCCChHHHHHHHHHHHcCCCCEEEEeCCCC-CCHHHHHHCCCCCCcEEEECCEEEeccHHHHHH
Confidence            378999999999999999999999999998887532 124677788889999999999988777666554

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.89  E-value=3.5e-05  Score=58.61  Aligned_cols=59  Identities=12%  Similarity=0.314  Sum_probs=45.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|++....|.+.      .+.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        21 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   87 (106)
T 3die_A           21 VQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPS----TAAKYEVMSIPTLIVFKDGQPVD   87 (106)
T ss_dssp             EEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSBSEEEEEETTEEEE
T ss_pred             cEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHH----HHHhCCCcccCEEEEEeCCeEEE
Confidence            346678899999999998887654      26778888887654    555678899999976  887654

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.89  E-value=3.1e-05  Score=62.43  Aligned_cols=77  Identities=13%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNS  232 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~  232 (327)
                      -|+.|+.+||++|++....|.++         ++.+..+|++.+.    ++.+.+|...+|++++  +|+ +..+...  
T Consensus        37 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~G~-~~~~~g~--  109 (140)
T 2dj1_A           37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS----MLASKFDVSGYPTIKILKKGQ-AVDYDGS--  109 (140)
T ss_dssp             EEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH----HHHHHTTCCSSSEEEEEETTE-EEECCSC--
T ss_pred             EEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH----HHHHHCCCCccCeEEEEECCc-EEEcCCC--
Confidence            46668889999999887777643         2667777777654    4556678899999987  887 4322211  


Q ss_pred             hhhcCchHHHHHHhhc
Q 039225          233 LRNSGTFDERFREMLG  248 (327)
Q Consensus       233 L~esGeL~~~Lk~~~~  248 (327)
                       ....+|.++|++...
T Consensus       110 -~~~~~l~~~l~~~~~  124 (140)
T 2dj1_A          110 -RTQEEIVAKVREVSQ  124 (140)
T ss_dssp             -CCHHHHHHHHHHHHS
T ss_pred             -CCHHHHHHHHHHhcC
Confidence             112245666766654

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.88  E-value=4.8e-05  Score=60.27  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=45.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+++...|.++      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        33 ~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   99 (119)
T 1w4v_A           33 PVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD----LAIEYEVSAVPTVLAMKNGDVVD   99 (119)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH----HHHHcCCCcccEEEEEeCCcEEE
Confidence            346778899999999998777652      46788888886553    556678899999988  998654

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.87  E-value=3.9e-05  Score=60.71  Aligned_cols=59  Identities=15%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCC-ChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDV-FPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~-d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|++....|+++     ++.+..+|++. +.    ++.+.+|..++|++++  +|+.++
T Consensus        39 ~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~----~~~~~~~v~~~Pt~~~~~~G~~~~  105 (124)
T 1faa_A           39 PVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK----TLAKELGIRVVPTFKILKENSVVG  105 (124)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH----HHHHHHCCSSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchH----HHHHHcCCCeeeEEEEEeCCcEEE
Confidence            446778999999999998888754     57788888873 33    4556678999999877  898764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.86  E-value=3.4e-05  Score=59.88  Aligned_cols=59  Identities=14%  Similarity=0.254  Sum_probs=44.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcC-CChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVD-VFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd-~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|++....|+++     ++.+..+|++ .+.    ++.+.+|..++|++++  +|+.++
T Consensus        26 ~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~v~~~Pt~~~~~~G~~~~   92 (111)
T 2pu9_C           26 PVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENK----TLAKELGIRVVPTFKILKENSVVG   92 (111)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH----HHHHHHCCSBSSEEEEESSSSEEE
T ss_pred             EEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchH----HHHHHcCCCeeeEEEEEeCCcEEE
Confidence            346678899999999998888764     5778888887 333    4556678899999877  787543

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.86  E-value=4.8e-05  Score=57.80  Aligned_cols=58  Identities=14%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|++....|++.      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        23 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   88 (106)
T 1xwb_A           23 VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYNISSMPTFVFLKNGVKVE   88 (106)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHH----HHHHcCCCcccEEEEEcCCcEEE
Confidence            46678899999999998777653      46677788876543    555678899999977  888654

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.86  E-value=3.7e-05  Score=59.50  Aligned_cols=59  Identities=15%  Similarity=0.297  Sum_probs=45.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|++....|.++      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        25 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   91 (112)
T 1t00_A           25 PVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG----TAAKYGVMSIPTLNVYQGGEVAK   91 (112)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             eEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHH----HHHhCCCCcccEEEEEeCCEEEE
Confidence            347778899999999998777653      36778888886654    555678899999977  887653

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.86  E-value=6.4e-05  Score=57.08  Aligned_cols=58  Identities=19%  Similarity=0.311  Sum_probs=45.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|++....|.+.      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        21 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   86 (109)
T 2yzu_A           21 VLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPK----TAMRYRVMSIPTVILFKDGQPVE   86 (109)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHh----HHHhCCCCcCCEEEEEeCCcEee
Confidence            46778899999999998877654      36778888887654    555678899999988  898654

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=97.84  E-value=3.4e-05  Score=70.59  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             cCCcEEEE--------EcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          161 IKGRISFF--------SRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       161 ~~~kVvLY--------sk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      .+..|+||        +..+||+|.+++-+|.++|++|+.+.|+... ...++.+++...+||+|..||..|.....|.+
T Consensus        15 ~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~~~g~~l~ES~aI~~   93 (267)
T 2ahe_A           15 KEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKR-KPADLQNLAPGTHPPFITFNSEVKTDVNKIEE   93 (267)
T ss_dssp             -CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHSTTCCSCEEEETTEEECCHHHHHH
T ss_pred             cCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCccc-ChHHHHHhCCCCCCCEEEECCEEecCHHHHHH
Confidence            45679999        7789999999999999999999988887532 22456677888899999999988877776655


Q ss_pred             h
Q 039225          233 L  233 (327)
Q Consensus       233 L  233 (327)
                      .
T Consensus        94 Y   94 (267)
T 2ahe_A           94 F   94 (267)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.83  E-value=8.5e-05  Score=56.60  Aligned_cols=59  Identities=17%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|++....|+++      .+.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        19 ~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   85 (105)
T 1nsw_A           19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE----TTSQFGIMSIPTLILFKGGRPVK   85 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHH----HHHHcCCccccEEEEEeCCeEEE
Confidence            347778899999999998877653      36788888886654    555678899999988  898654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.83  E-value=8.9e-05  Score=58.38  Aligned_cols=63  Identities=16%  Similarity=0.194  Sum_probs=47.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH----cCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ----RGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e----lgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|++....|.+    ++..+..+|++...  +...++.+.+|..++|++++  +|+.+.
T Consensus        31 ~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G~~~~  101 (118)
T 1zma_A           31 TATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINV  101 (118)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEE
T ss_pred             eEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECCEEEE
Confidence            44677899999999998766654    46778888887644  33446777789999999864  787654

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.83  E-value=6.1e-05  Score=57.36  Aligned_cols=58  Identities=17%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      -++.|+.+||++|++....|.++      .+.+..+|++.+++    +.+.+|..++|+++  .+|+.++
T Consensus        24 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~   89 (109)
T 3tco_A           24 VLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQK----IADKYSVLNIPTTLIFVNGQLVD   89 (109)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHH----HHHhcCcccCCEEEEEcCCcEEE
Confidence            36678899999999998877654      36678888886664    55567889999964  4887654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.80  E-value=5.9e-05  Score=57.79  Aligned_cols=58  Identities=16%  Similarity=0.320  Sum_probs=43.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|++....|.++         ++.+..+|++.+++    +.+..|...+|++++  +|+.+.
T Consensus        24 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~~   92 (111)
T 3uvt_A           24 TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN----ICSKYSVRGYPTLLLFRGGKKVS   92 (111)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHh----HHHhcCCCcccEEEEEeCCcEEE
Confidence            36678999999999999888754         34566777776554    556678899999876  887654

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=97.80  E-value=4.7e-05  Score=60.66  Aligned_cols=59  Identities=17%  Similarity=0.350  Sum_probs=45.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+++...|.++       ++.+..+|++.+++    +.+.+|...+|++++  +|+.+.
T Consensus        35 ~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~G~~~~  102 (121)
T 2j23_A           35 VVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQ----IAQEVGIRAMPTFVFFKNGQKID  102 (121)
T ss_dssp             CEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHH----HHHHHTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHH----HHHHcCCCcccEEEEEECCeEEe
Confidence            346778899999999999888753       27788888887654    455668889999877  888653

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.80  E-value=3.3e-05  Score=60.46  Aligned_cols=58  Identities=17%  Similarity=0.314  Sum_probs=45.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|++....|.++      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        20 ~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   85 (112)
T 2voc_A           20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE----TAGKYGVMSIPTLLVLKDGEVVE   85 (112)
T ss_dssp             EEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS----HHHHTTCCSBSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH----HHHHcCCCcccEEEEEeCCEEEE
Confidence            36668899999999998877652      57888899987765    455678899999988  998654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.80  E-value=0.0001  Score=60.03  Aligned_cols=55  Identities=24%  Similarity=0.568  Sum_probs=43.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcC----CceEEEEcCCChhHHHHHHHHhCCCCccEEEe----CCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRG----LKFVEINVDVFPPREKELIRRTGSSQVPQVFL----NDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI----nGe  222 (327)
                      -|+.|+.+||++|+++...|+++.    +.+..+|++.+.    ++.+.+|...+|++++    +|+
T Consensus        43 vvv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           43 IVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIHP----KLNDQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             EEEEEECTTCHHHHHTHHHHHGGGGTEECEEEEEETTTCH----HHHHHTTCCSSSEEEEEEEETTE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHhcCEEEEEEeccchH----HHHHhcCCCCCCEEEEEEecCCC
Confidence            366688999999999999998764    566777777654    3556678899999965    887

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=97.80  E-value=6.5e-05  Score=65.87  Aligned_cols=72  Identities=13%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+.+||..+.||+|++|+-+|.++|++|+.+.|+.  .+....++.+++-..+||++..||..|.....|.+..
T Consensus         2 ~kpiLY~~~~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~eS~aI~~YL   75 (228)
T 4hi7_A            2 VKPILYGIDASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLEDGDANIADSHAIMAYL   75 (228)
T ss_dssp             -CCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEECCCChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhCCCCceeeEEECCEEEechHHHHHHH
Confidence            45689999999999999999999999998877764  3345567777887889999999999888887776653

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=7.9e-05  Score=59.19  Aligned_cols=55  Identities=15%  Similarity=0.304  Sum_probs=43.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      -|+.|+.+||++|++....|.++       ++.+..+|++.+.+    +.+.++...+|++++  +|+
T Consensus        25 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~   88 (126)
T 1x5e_A           25 WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG----LSGRFIINALPTIYHCKDGE   88 (126)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTE
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHH----HHHHcCCcccCEEEEEeCCe
Confidence            36678899999999998887653       57888899887654    555678899999977  887

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=97.78  E-value=8.1e-05  Score=65.03  Aligned_cols=73  Identities=14%  Similarity=0.167  Sum_probs=60.4

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh----hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP----PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~----e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +.+++||+.+.||+|.+++-+|...|++|+.+.|+...    ....++.+++...+||++..||..|.....|.+..
T Consensus        10 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   86 (223)
T 2cz2_A           10 AGKPILYSYFRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITIVQSLAIMEYL   86 (223)
T ss_dssp             -CCCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             cCceEEEecCCCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            35689999999999999999999999999999987543    24456777888899999999999888887776543

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=97.77  E-value=5.1e-05  Score=64.94  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=59.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||+.+.||+|.+++-+|...|++|+.+.++...  ....++.+++...+||++..||..|.+...|.+..
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (209)
T 1axd_A            2 PMKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYA   74 (209)
T ss_dssp             CEEEESCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEeCCCCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhCcCCCCCeEEECCEEEecHHHHHHHH
Confidence            478999999999999999999999999999887532  34456767777889999999999998887776543

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=97.77  E-value=6.4e-05  Score=67.23  Aligned_cols=71  Identities=13%  Similarity=0.279  Sum_probs=56.8

Q ss_pred             CCcEEEEEcC--------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFFSRS--------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~--------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +..++||.++        .||+|.+++-+|..+|++|+.+.|+.. ....++.+++...+||++..||..|.....|.+.
T Consensus         5 ~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~eS~aI~~y   83 (241)
T 1k0m_A            5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTK-RRTETVQKLCPGGELPFLLYGTEVHTDTNKIEEF   83 (241)
T ss_dssp             -CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTT-SCCHHHHHHCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             CCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCc-ccHHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            4568999987        899999999999999999998888753 2334566777788999999999888776666543

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=97.76  E-value=9.8e-05  Score=64.05  Aligned_cols=70  Identities=14%  Similarity=0.112  Sum_probs=58.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.++||+.+.||+|.+++-+|...|++|+.+.++.. ....++.+++...+||++..||..+.+...|...
T Consensus         9 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   78 (213)
T 1yy7_A            9 SVMTLFSGPTDIFSHQVRIVLAEKGVSVEIEQVEAD-NLPQDLIDLNPYRTVPTLVDRELTLYESRIIMEY   78 (213)
T ss_dssp             SSEEEEECTTCHHHHHHHHHHHHHTCCEEEEECCTT-SCCHHHHHHCTTCCSSEEEETTEEEESHHHHHHH
T ss_pred             CceEEEcCCCChhHHHHHHHHHHcCCCCeEEeCCcc-cCcHHHHHHCCCCCCCEEEECCEEEecHHHHHHH
Confidence            458999999999999999999999999999998752 2234566777788999999999888877766654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=97.75  E-value=7.8e-05  Score=60.59  Aligned_cols=58  Identities=29%  Similarity=0.458  Sum_probs=45.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||++|+.....|+++      ++.|..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        53 vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~  118 (140)
T 1v98_A           53 TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG----LAARYGVRSVPTLVLFRRGAPVA  118 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHCCCCccCEEEEEeCCcEEE
Confidence            46778899999999998888753      36678888886654    555678899999987  898653

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=97.74  E-value=7.2e-05  Score=57.71  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=39.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|+++...|.++     ++.+..+|++.+++    +.+.+|..++|++++  +|+.+.
T Consensus        21 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   85 (105)
T 4euy_A           21 VLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQE----IAGRYAVFTGPTVLLFYNGKEIL   85 (105)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC-------------CCCCEEEEEETTEEEE
T ss_pred             EEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHH----HHHhcCCCCCCEEEEEeCCeEEE
Confidence            35668899999999999888764     56778888887764    445567889999765  888763

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.74  E-value=8.3e-05  Score=59.07  Aligned_cols=56  Identities=14%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             EEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          166 SFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      +-|+.+||+.|+.+...|.++     ++.+..+|++..++    |.+.+|..++|+++  -||+.++
T Consensus        25 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~V~~~PT~~~~~~G~~v~   87 (105)
T 3zzx_A           25 IDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECED----IAQDNQIACMPTFLFMKNGQKLD   87 (105)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTTCCBSSEEEEEETTEEEE
T ss_pred             EEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHH----HHHHcCCCeecEEEEEECCEEEE
Confidence            338999999999999888765     45577788886654    66678899999874  4888554

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=97.73  E-value=0.0001  Score=64.02  Aligned_cols=73  Identities=15%  Similarity=0.224  Sum_probs=60.2

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +.+++||+.+.||+|.+++-+|...|++|+.+.++..  .....++.+++...+||++..||..|.....|....
T Consensus         6 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   80 (221)
T 1e6b_A            6 EEKLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYL   80 (221)
T ss_dssp             --CCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCeEEEecCCCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            4568999999999999999999999999999988753  234456777888899999999999998888776654

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=97.73  E-value=7.1e-05  Score=65.40  Aligned_cols=69  Identities=12%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .++||+.++||+|.+++-+|...|++|+.+.|..  ....++.+++...+||++..+|..|.....|.+..
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~--~~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL   70 (229)
T 3lxz_A            2 SLKLYGFSVSNYYNMVKLALLEKGLTFEEVTFYG--GQAPQALEVSPRGKVPVLETEHGFLSETSVILDYI   70 (229)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCC--CSCHHHHTTSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEeCCCCchHHHHHHHHHHcCCCCEEEecCC--CCCHHHHhhCCCCCcCeEEeCCceeecHHHHHHHH
Confidence            3899999999999999999999999999999953  23456777788889999999998888777666543

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.72  E-value=7.9e-05  Score=60.94  Aligned_cols=59  Identities=19%  Similarity=0.346  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|++....|.++      .+.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        26 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   92 (140)
T 3hz4_A           26 PVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPW----TAEKYGVQGTPTFKFFCHGRPVW   92 (140)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHH----HHHHHTCCEESEEEEEETTEEEE
T ss_pred             cEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHh----HHHHCCCCcCCEEEEEeCCcEEE
Confidence            346778999999999998887654      27788888887654    555678899999987  898664

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.72  E-value=0.00016  Score=54.71  Aligned_cols=59  Identities=15%  Similarity=0.271  Sum_probs=44.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|+.....|.+.      ++.+..+|++.+++    +.+..|...+|++++  +|+.++
T Consensus        20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   86 (105)
T 1fb6_A           20 PVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYNIRSIPTVLFFKNGERKE   86 (105)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             cEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHH----HHHhCCCCcccEEEEEeCCeEEE
Confidence            447778899999999998887653      26677788876654    555678899999987  887543

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=97.72  E-value=0.00011  Score=60.29  Aligned_cols=79  Identities=24%  Similarity=0.420  Sum_probs=53.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~  234 (327)
                      .-++.|+.+||++|++....|+++      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++-+...   .
T Consensus        57 ~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~G~---~  129 (148)
T 3p2a_A           57 PMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA----LSTRFRIRSIPTIMLYRNGKMIDMLNGA---V  129 (148)
T ss_dssp             CEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEEEESSC---C
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHH----HHHHCCCCccCEEEEEECCeEEEEEeCC---C
Confidence            346678999999999998887653      46677888886664    556678899999866  88866432211   1


Q ss_pred             hcCchHHHHHHhhc
Q 039225          235 NSGTFDERFREMLG  248 (327)
Q Consensus       235 esGeL~~~Lk~~~~  248 (327)
                      ...+|.++|+....
T Consensus       130 ~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          130 PKAPFDNWLDEQLS  143 (148)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhc
Confidence            22345666666554

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=97.72  E-value=6e-05  Score=65.39  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||+.+.||+|.+++-+|...|++|+.+.|+.. ....++.+++...+||.+..||..|.....|.+..
T Consensus         8 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   77 (215)
T 3lyp_A            8 RLACYSDPADHYSHRVRIVLAEKGVSAEIISVEAG-RQPPKLIEVNPYGSLPTLVDRDLALWESTVVMEYL   77 (215)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHHTCCCEEEECC----CCHHHHHHCTTCCSSEEECC-CEEESHHHHHHHH
T ss_pred             CeEEEeCCCCchHHHHHHHHHHCCCCcEEEecCcc-cccHHHHHHCCCCCcCeEEECCEEeecHHHHHHHH
Confidence            68999999999999999999999999999988754 23356777888899999999998888777665543

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=97.72  E-value=9.9e-05  Score=64.24  Aligned_cols=71  Identities=14%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .+++||+.+.||+|.+++-+|...|++|+.+.++..  .....++.+++...+||++..||..|.+...|.+.
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   74 (221)
T 2imi_A            2 SNLVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIY   74 (221)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEeeCCCCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhCcCCCCCEEEECCEEEeeHHHHHHH
Confidence            458999999999999999999999999999988742  22345676777888999999999988888776654

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=97.72  E-value=8.5e-05  Score=64.44  Aligned_cols=72  Identities=10%  Similarity=0.077  Sum_probs=59.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++++||+.+.||+|.+++-+|...|++|+.+.++..  .....++.+++...+||++..||..+.+...|.+..
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3ay8_A            2 SSLKLYHFPVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVLWESRAIACYL   75 (216)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSSSCCSSEEEETTEEEECHHHHHHHH
T ss_pred             CceEEecCCCCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCCCCCCCeEEECCEEEEcHHHHHHHH
Confidence            457899999999999999999999999999988753  223356777788889999999999888887766543

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=97.72  E-value=0.00012  Score=62.88  Aligned_cols=70  Identities=13%  Similarity=0.072  Sum_probs=59.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH--hCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR--TGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l--tG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.++..  ...++.++  +...+||++..||..|.....|....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   73 (207)
T 1zl9_A            2 VSYKLTYFNGRGAGEVSRQIFAYAGQQYEDNRVTQE--QWPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFL   73 (207)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTT--THHHHHHTTCSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcCCCchHHHHHHHHHHcCCCceEEEecHH--HHHHHhhccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            468999999999999999999999999999999853  23567777  67789999999999888887776644

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=97.71  E-value=9.4e-05  Score=63.95  Aligned_cols=73  Identities=16%  Similarity=0.179  Sum_probs=59.4

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHH-----HhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIR-----RTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~-----ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      |..++||+.+.||+|.+++-+|...|++|+.+.++...+...++.+     ++...+||++..||..|.....|.+..
T Consensus         2 m~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   79 (211)
T 1okt_A            2 GDNIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVRYL   79 (211)
T ss_dssp             CCCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCccEEEEECCCchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccCCCCCCCEEEECCEEeehHHHHHHHH
Confidence            4568999999999999999999999999999888532223456666     777889999999999888887776644

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=97.71  E-value=8.8e-05  Score=64.15  Aligned_cols=72  Identities=14%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             CcEEEEEcC--CChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRS--NCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~--~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++||+.+  .||+|.+++-+|...|++|+.+.|+...  ....++.+++...+||++..||..|.....|....
T Consensus         5 ~~~~Ly~~~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   80 (215)
T 3bby_A            5 PAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYL   80 (215)
T ss_dssp             CCEEEEEETTSCCHHHHHHHHHHHHHTCCCEEEEEC------------------CCCEEEETTEEEESHHHHHHHH
T ss_pred             CCEEEEecCCCCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCCCCCCCEEEeCCeEeecHHHHHHHH
Confidence            568999987  8999999999999999999988887532  33456667777789999999999888887766543

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.71  E-value=0.00011  Score=58.37  Aligned_cols=57  Identities=16%  Similarity=0.262  Sum_probs=42.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH----------cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ----------RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e----------lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      -++.|+.+||++|+++...|.+          .++.+..+|++.+.+    +.+.++...+|++++  +|+.+
T Consensus        28 ~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~   96 (133)
T 1x5d_A           28 WMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV----LASRYGIRGFPTIKIFQKGESP   96 (133)
T ss_dssp             EEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH----HHHHHTCCSSSEEEEEETTEEE
T ss_pred             EEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH----HHHhCCCCeeCeEEEEeCCCce
Confidence            4667889999999988766653          246677888886654    555678899999976  77754

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=97.70  E-value=9.2e-05  Score=63.35  Aligned_cols=70  Identities=13%  Similarity=0.103  Sum_probs=59.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.++.  +...++.+++...+||++..||..|.+...|.+..
T Consensus         2 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~~e~~~v~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on7_A            2 VHYKLTYFAIRGAGECARQIFALADQEFEDVRLDK--EQFAKVKPDLPFGQVPVLEVDGKQLAQSLAICRYL   71 (206)
T ss_dssp             CCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcCCCcchHHHHHHHHHcCCCeeEEEecH--HHHHHhCcCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            45899999999999999999999999999999883  23356667778889999999999998887776644

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=97.70  E-value=7.4e-05  Score=65.93  Aligned_cols=71  Identities=15%  Similarity=0.199  Sum_probs=58.8

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      +++++||+.++||+|.+++-+|...|++|+.+.|+... ..+++.+++...+||++.. ||..+.....|.+.
T Consensus        21 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   92 (241)
T 3vln_A           21 EGSIRIYSMRFSPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEY   92 (241)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHHHHTCCEEEEEBCTTS-CCTTHHHHCTTCCSCEEECTTCCEEESHHHHHHH
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHcCCCCeEEecCccc-CCHHHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence            56799999999999999999999999999999987542 1234666778889999999 88888877766554

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=97.70  E-value=0.00013  Score=63.46  Aligned_cols=70  Identities=13%  Similarity=0.132  Sum_probs=56.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC-CCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS-SQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~-~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .+++||+.+.||+|.+++-+|...|++|+.+.++.. ....++.+++.. .+||++..||..+.+...|...
T Consensus         3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~y   73 (219)
T 2vo4_A            3 DEVVLLDFWPSPFGMRVRIALAEKGIKYEYKEEDLR-NKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQY   73 (219)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTT-SCCHHHHHHCTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEEeccCCchHHHHHHHHHHcCCCceEEecCcc-cCCHHHHHhCCCCCcCCEEEECCEeeehHHHHHHH
Confidence            368999999999999999999999999999888753 223445666664 7999999999888877766654

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.70  E-value=0.00017  Score=56.32  Aligned_cols=59  Identities=19%  Similarity=0.332  Sum_probs=46.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+++...|.++      ++.+..+|++.+++    +.+..|...+|++++  +|+.++
T Consensus        32 ~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~   98 (121)
T 2i1u_A           32 PVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE----TARNFQVVSIPTLILFKDGQPVK   98 (121)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhcCCCcCCEEEEEECCEEEE
Confidence            447778999999999998887653      47788888887654    555678899999987  888653

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=97.69  E-value=6.4e-05  Score=64.45  Aligned_cols=71  Identities=13%  Similarity=0.039  Sum_probs=58.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++||+.+.||+|.+++-+|...|++|+.+.++.. +...++.+++...+||.+..||..|.....|.+..
T Consensus         2 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   72 (208)
T 1yq1_A            2 PSYKLTYFFFRGLGEPIRLLFHLAGVQFEEVRMNPD-QTWLDIKDSTPMKQLPVLNIDGFELPQSGAILRYL   72 (208)
T ss_dssp             CCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEECTT-TCCHHHHHTSTTSCSCEEEESSCEECCHHHHHHHH
T ss_pred             CceEEEEeCCCCchHHHHHHHHHcCCCeEEEEeccc-chhhhhhccCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            468999999999999999999999999999888731 11245667777889999999998888887776644

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=97.69  E-value=0.00011  Score=63.87  Aligned_cols=69  Identities=16%  Similarity=0.274  Sum_probs=58.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .++||+.++||+|.+++-+|...|++|+.+.|+.. ....++.+++...+||++..||..+.+...|.+.
T Consensus         6 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   74 (216)
T 3lyk_A            6 VMTLFSNKDDIYCHQVKIVLAEKGVLYENAEVDLQ-ALPEDLMELNPYGTVPTLVDRDLVLFNSRIIMEY   74 (216)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             eEEEEeCCCChhHHHHHHHHHHcCCCcEEEeCCcc-cCcHHHHhhCCCCCcCeEEECCeEecCHHHHHHH
Confidence            48999999999999999999999999999998754 2334677788889999999999988877766554

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=97.69  E-value=7.2e-05  Score=65.78  Aligned_cols=74  Identities=7%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++..++||+.+.||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||++..||..|.....|.+..
T Consensus        20 m~~m~~Ly~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   95 (229)
T 4iel_A           20 FQSMLHILGKIPSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALNPNGLVPVIKDDGFVLWESNTIIRYL   95 (229)
T ss_dssp             --CCEEEESCTTCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             ccceEEEecCCCCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            34558999999999999999999999999999988753  233456777778889999999999998887776543

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=97.69  E-value=0.0001  Score=63.59  Aligned_cols=73  Identities=16%  Similarity=0.058  Sum_probs=59.0

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      |.+++||+.+.|++|.+++-+|...|++|+.+.|+.......++...+...+||++..||..|.....|.+..
T Consensus         1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   73 (210)
T 2a2r_A            1 MPPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHL   73 (210)
T ss_dssp             CCSEEEEECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCceEEEEeCCcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            3468999999999999999999999999999998743222235666777889999999999888877766543

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=97.69  E-value=0.00012  Score=64.39  Aligned_cols=71  Identities=11%  Similarity=0.138  Sum_probs=57.7

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC-CCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS-SQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~-~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.+++||+.+.||+|.+++-+|...|++|+.+.|+.. ....++.+++.. .+||++..||..|.....|...
T Consensus         4 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~y   75 (231)
T 1oyj_A            4 EKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLG-NKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQY   75 (231)
T ss_dssp             SCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCceEEEeCCCChHHHHHHHHHHHCCCCCeEEecCcc-cCCHHHHhhCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            4679999999999999999999999999999988753 223456666766 6999999999888877766554

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.69  E-value=0.00017  Score=55.07  Aligned_cols=58  Identities=21%  Similarity=0.351  Sum_probs=44.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      .-++.|+.+||++|++....|++.      ++.+..+|++.+++    +.+.+|...+|++++  +|+.+
T Consensus        21 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~   86 (107)
T 1dby_A           21 PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEYGIRSIPTIMVFKGGKKC   86 (107)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHHTCCSSCEEEEESSSSEE
T ss_pred             cEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH----HHHHCCCCcCCEEEEEeCCEEE
Confidence            346778899999999998877653      36778888886654    455678899999877  78754

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=97.69  E-value=0.00011  Score=63.33  Aligned_cols=70  Identities=9%  Similarity=0.095  Sum_probs=58.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +++||+.+.||+|.+++-+|...|++|+.+.|+...  ....++.+++...+||++..||..|.+...|.+.
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   73 (214)
T 2v6k_A            2 KMKLYNFWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEW   73 (214)
T ss_dssp             CCEEEECSSCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECSSCEEECHHHHHHH
T ss_pred             eeEEEecCCCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCCCCcCCEEEECCEEEecHHHHHHH
Confidence            468999999999999999999999999998887532  3445677788889999998888888877766654

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=97.69  E-value=7.2e-05  Score=64.02  Aligned_cols=70  Identities=11%  Similarity=0.075  Sum_probs=58.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++||+.+.||+|.+++-+|...|++|+.+.++.+.  ..++.+++...+||.+..||..+.+...|....
T Consensus         2 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on5_A            2 VHYKLTYFAGRGLAEPIRQIFALAGQKYEDVRYTFQE--WPKHKDEMPFGQIPVLEEDGKQLAQSFAIARYL   71 (206)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTT--GGGGGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEecCCCcchHHHHHHHHHcCCCceEEEecHHH--HHHhccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            4689999999999999999999999999999887532  245566777889999999999998887776644

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=97.68  E-value=5.4e-05  Score=64.87  Aligned_cols=70  Identities=17%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +++||+.+.||+|.+++-+|...|++|+.+.++...  ....++.+++...+||++..||..+.+...|.+.
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   73 (211)
T 1gnw_A            2 GIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQY   73 (211)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eeEEEeCCCCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEECCEEEeCHHHHHHH
Confidence            478999999999999999999999999998887432  2334455667778999999999988887766654

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=97.68  E-value=0.00012  Score=63.09  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=57.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++||+.+.||+|.+++-+|...|++|+.+.++..  .....++.+++...+||++..||..|.....|...
T Consensus         1 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   71 (209)
T 1pn9_A            1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVDNGFALWESRAIQIY   71 (209)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSSEEEETTEEEESHHHHHHH
T ss_pred             CeEEeCCCCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCCCCCCCEEEECCEEEEeHHHHHHH
Confidence            3699999999999999999999999999888742  23345677788888999999999988888777654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=97.68  E-value=0.00012  Score=61.51  Aligned_cols=59  Identities=15%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-|+.|+.+||++|+.....|+++      ++.|..+|++.+++    +.+.+|..++|++++  +|+.++
T Consensus        66 ~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~G~~~~  132 (155)
T 2ppt_A           66 PLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA----VAGRHRIQGIPAFILFHKGRELA  132 (155)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             cEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH----HHHHcCCCcCCEEEEEeCCeEEE
Confidence            447778899999999998887643      47788899887664    556678899999977  898653

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=97.68  E-value=0.00013  Score=64.73  Aligned_cols=72  Identities=14%  Similarity=0.186  Sum_probs=60.3

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.+++||+.+.||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||++..||..|.....|.+.
T Consensus        24 ~~~~~Ly~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~Y   97 (243)
T 3qav_A           24 TSKPFVYWGSGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNPRGQVPTFTDGDVVVNESTAICMY   97 (243)
T ss_dssp             -CCCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEECSHHHHHHH
T ss_pred             cCccEEEeCCCCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHH
Confidence            4579999999999999999999999999998888653  34456788888889999999999988877766554

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=97.67  E-value=3.6e-05  Score=66.38  Aligned_cols=71  Identities=15%  Similarity=0.287  Sum_probs=57.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||+.+.||+|.+++-+|...|++|+.+.++...  ....++.+++...+||++..||..|.+...|.+..
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (216)
T 1aw9_A            2 PLKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYI   74 (216)
T ss_dssp             CEEEESCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEecCCCccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhCCCCCcCEEEECCEEeeCHHHHHHHH
Confidence            578999999999999999999999999998887432  12234455677889999999999998887776543

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=97.67  E-value=0.00013  Score=64.20  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=51.0

Q ss_pred             CcEEEE---------EcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH-----------hCCCCccEEEe--C
Q 039225          163 GRISFF---------SRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR-----------TGSSQVPQVFL--N  220 (327)
Q Consensus       163 ~kVvLY---------sk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l-----------tG~~tVPqIFI--n  220 (327)
                      .+|++|         ..++||||.+|+-+|..+||+|+.+.|+. .+....+...           +...+||+|..  |
T Consensus         3 ~pi~lYd~~~~~~~~~~~~SP~~~kvr~~L~~kgi~y~~~~v~~-~~~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~   81 (253)
T 4f03_A            3 QPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEY-PDIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNT   81 (253)
T ss_dssp             CCEEEEECCCCGGGTTCCCCHHHHHHHHHHHHHTCCEEEEECCG-GGHHHHHHHHTCCCSEECTTCCEECCSCEEEETTT
T ss_pred             CCeEEeecCCCCCCCCCCcChhHHHHHHHHHHcCCCCEEEEEcc-ccchhhhhhcCCCCchhhHhhCCCCccCeEEeCCC
Confidence            458888         45789999999999999999999999984 2333333332           22468999987  5


Q ss_pred             CEEeechHHHHHh
Q 039225          221 DKLFGGLVALNSL  233 (327)
Q Consensus       221 Ge~IGG~deL~~L  233 (327)
                      |..|.....|.+.
T Consensus        82 g~~l~ES~aI~~Y   94 (253)
T 4f03_A           82 KKVVEDSAAIAKY   94 (253)
T ss_dssp             TEEEESHHHHHHH
T ss_pred             CEEEecHHHHHHH
Confidence            6777766666544

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=97.66  E-value=9.1e-05  Score=67.52  Aligned_cols=71  Identities=15%  Similarity=0.374  Sum_probs=55.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHH-HHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKE-LIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~e-L~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      +.++||..+.||||++|+-+|.++|++|+.+.|+......+. +.+++...+||+|.+ ||..|.....|.+.
T Consensus         5 ~~~~LY~~~~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~Y   77 (265)
T 4g10_A            5 QELTIYHIPGCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESMVILRY   77 (265)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHTSCCCSCEEECTTSCEEECHHHHHHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcCCCCccceEEECCCeEEeccHHHHHH
Confidence            568999999999999999999999999998888653211122 456778899999986 67777766666554

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=97.65  E-value=9.8e-05  Score=63.18  Aligned_cols=70  Identities=11%  Similarity=0.054  Sum_probs=58.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++||+.+.||+|.+++-+|...|++|+.+.|+.  +...++.+++...+||.+..||..|.+...|.+..
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 1tw9_A            2 VHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYL   71 (206)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcCCCccHHHHHHHHHHcCCCceEEEeCH--HHHHHHcccCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            45899999999999999999999999999999873  22345666777889999999999998888776654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=97.65  E-value=5.3e-05  Score=61.43  Aligned_cols=58  Identities=17%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||++|++....|+++      ++.+..+|++.+++    +.+.+|...+|++++  +|+.++
T Consensus        43 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~  108 (128)
T 2o8v_B           43 ILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAA  108 (128)
T ss_dssp             EEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT----TSGGGTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCccCEEEEEeCCEEEE
Confidence            46678899999999998777653      36778888887664    444578889999988  998653

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=97.64  E-value=0.00014  Score=62.43  Aligned_cols=73  Identities=11%  Similarity=0.248  Sum_probs=59.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~e  235 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.|+..  +....++.+++...+||.+.+ ||..+.....|.+...
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~d~g~~l~eS~aI~~yL~   77 (210)
T 3m3m_A            2 SLYKVYGDYRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELEDGTCLWESNAILNFLA   77 (210)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTCTTCCSCEEEETTSCEEECHHHHHHHHH
T ss_pred             CeEEEeCCCCCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhCCCCCCCEEEecCCEEEecHHHHHHHHh
Confidence            358999999999999999999999999999988752  233456777777889999996 7888888777766544

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=97.64  E-value=0.00012  Score=67.86  Aligned_cols=70  Identities=9%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh-CCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT-GSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt-G~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.++||..+.||+|.+++-+|..+|++|+.+.++.. ....++..++ ...+||.+..||..+.....|...
T Consensus         2 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~ye~~~v~~~-~~~~~~~~~n~P~g~vPvL~~~g~~l~eS~aI~~y   72 (310)
T 3ic8_A            2 SELILHHYPTSLFAEKARLMLGFKGVNWRSVTIPSI-MPKPDLTALTGGYRKTPVLQIGADIYCDTALMARR   72 (310)
T ss_dssp             CCEEEEECTTCGGGHHHHHHHHHHTCEEEEEECCSS-SCCHHHHHHHSSCCCSCEEEETTEEECSHHHHHHH
T ss_pred             CeEEEEecCCCcHHHHHHHHHHhcCCCcEEEEcCCC-CCcHHHHHhcCCCCceeEEEECCEEEcCHHHHHHH
Confidence            468999999999999999999999999999988753 2334667778 889999999999988877766544

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=97.63  E-value=0.0001  Score=63.13  Aligned_cols=70  Identities=11%  Similarity=0.068  Sum_probs=58.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++||+.+.||+|.+++-+|...|++|+.+.|+.+.  ..++.+++...+||++..||..|.....|.+..
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (204)
T 2ws2_A            2 VHYKLTYFNGRGAAEIIRQVFVLAGQDYEDVRLTHEE--WPKHKASMPFGQLPVLEVDGKQLPQSVAIVRYL   71 (204)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECTTT--GGGTGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CccEEEEeCCCchHHHHHHHHHHcCCCceEEEecHhh--HHHhhhcCCCCCCCEEEECCEEeecHHHHHHHH
Confidence            4589999999999999999999999999999887532  245566777889999999999998888776654

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=97.63  E-value=0.00012  Score=65.92  Aligned_cols=72  Identities=15%  Similarity=0.316  Sum_probs=49.0

Q ss_pred             CCcEEEEEc--------CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFFSR--------SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk--------~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +..|.||.+        +.||||.+++-+|..+|++|+.+.|+.. ....++.+++...+||++..||..+.....|.+.
T Consensus        23 ~~~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~dg~~l~ES~aI~~Y  101 (250)
T 3fy7_A           23 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTR-RSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDF  101 (250)
T ss_dssp             --CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC---------------CCSCEEEETTEEECCHHHHHHH
T ss_pred             CCCceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCc-cChHHHHhhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            346999997        4699999999999999999999888754 2334677777888999999999988877766654


Q ss_pred             h
Q 039225          234 R  234 (327)
Q Consensus       234 ~  234 (327)
                      .
T Consensus       102 L  102 (250)
T 3fy7_A          102 L  102 (250)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.63  E-value=0.00045  Score=55.95  Aligned_cols=76  Identities=17%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe---CCEE---eechHHH
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL---NDKL---FGGLVAL  230 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI---nGe~---IGG~deL  230 (327)
                      .-|+.|+.+||++|++....|.++      ++.+..+|++.+++    +.+.+|...+|++++   +|+.   .|+.+  
T Consensus        40 ~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~~G~~~~~~G~~~--  113 (136)
T 2l5l_A           40 PAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE----LAGAFGIRSIPSILFIPMEGKPEMAQGAMP--  113 (136)
T ss_dssp             CEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSCEEEEECSSSCCEEEESCCC--
T ss_pred             EEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHH----HHHHcCCCCCCEEEEECCCCcEEEEeCCCC--
Confidence            447779999999999998887653      36788888886653    555678899999864   6764   33332  


Q ss_pred             HHhhhcCchHHHHHHhhcc
Q 039225          231 NSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       231 ~~L~esGeL~~~Lk~~~~~  249 (327)
                           ..+|.++|++....
T Consensus       114 -----~~~l~~~l~~~~~~  127 (136)
T 2l5l_A          114 -----KASFKKAIDEFLLK  127 (136)
T ss_dssp             -----HHHHHHHHHHHHTS
T ss_pred             -----HHHHHHHHHHHhhc
Confidence                 23466777766543

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=97.61  E-value=0.00019  Score=62.70  Aligned_cols=71  Identities=11%  Similarity=0.227  Sum_probs=56.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC-CCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS-SQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~-~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++||+.+.||+|.+++-+|...|++|+.+.++.. ....++.+++-. .+||++..||..|.+...|.+..
T Consensus         5 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL   76 (230)
T 1gwc_A            5 DDLKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLY-KKSELLLKSNPVHKKIPVLIHNGAPVCESMIILQYI   76 (230)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHcCCCCeEEecccc-cCCHHHHhhCCCCCccCEEEECCEEeecHHHHHHHH
Confidence            568999999999999999999999999999888753 222345566654 79999999998888877766543

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=97.60  E-value=0.00025  Score=61.07  Aligned_cols=69  Identities=12%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh-hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP-PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++||+.+.||+|.+++-+|...|++|+.+.++... +...++.+++...+||++..||..+.+...|.+.
T Consensus         1 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   70 (210)
T 1v2a_A            1 MDYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLY   70 (210)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CeEEeCCCCccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhCCCCCcCeEEECCEEEEcHHHHHHH
Confidence            46999999999999999999999999998887532 2226777888888999999999988888776654

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.59  E-value=0.00018  Score=57.68  Aligned_cols=58  Identities=17%  Similarity=0.415  Sum_probs=44.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|++....|.++      ++.+..+|++.++    ++.+.+|...+|++++  +|+.++
T Consensus        45 vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~----~l~~~~~v~~~Pt~~~~~~G~~~~  110 (128)
T 3ul3_B           45 IVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE----SLARKFSVKSLPTIILLKNKTMLA  110 (128)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH----HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHcCCCCcCEEEEEECCEEEE
Confidence            35568899999999998887654      3566777777655    4666778999999977  898665

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=97.59  E-value=0.00016  Score=63.29  Aligned_cols=74  Identities=15%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhhhc
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLRNS  236 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~es  236 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||++.+ ||..|.....|.+....
T Consensus         2 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~   78 (225)
T 3m8n_A            2 SLYKLYSMQRSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNPSGQVPLLETAPGRYLAESNAILWYLAV   78 (225)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTCTTCCSSEEECSTTCEEECHHHHHHHHHT
T ss_pred             CceEEecCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhCCCCCCCEEEeCCCCEEEcHHHHHHHHHc
Confidence            348999999999999999999999999999988742  223456777777889999997 77888888877766543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.59  E-value=0.00021  Score=56.82  Aligned_cols=59  Identities=19%  Similarity=0.343  Sum_probs=45.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--C----CEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--N----DKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--n----Ge~IG  225 (327)
                      .-|+.|+.+||++|+.+...|.++     ++.+..+|++.+++    +.+.++...+|++++  +    |+.++
T Consensus        25 ~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~~~~~G~~~~   94 (118)
T 2f51_A           25 LVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGN----AADAYGVSSIPALFFVKKEGNEIKTLD   94 (118)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEEEETTEEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHhcCCCCCCEEEEEeCCCCcceEEE
Confidence            346678999999999998888763     67888999987654    556678899999865  5    66543

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=97.58  E-value=0.0002  Score=62.53  Aligned_cols=70  Identities=17%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .++||..++||+|++|+-+|.++|++|+.+.|+.  .+....++.+++-..+||++..||..|.....|.+.
T Consensus         2 ~mkLY~~~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~Y   73 (216)
T 3vk9_A            2 TIDLYYVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITY   73 (216)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEECCHHHHHHH
T ss_pred             CEEEEeCCCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEecCCceeechHHHHHH
Confidence            3789999999999999999999999998877764  344556787888788999999999988777766654

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=97.58  E-value=0.00022  Score=63.77  Aligned_cols=72  Identities=18%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++|++|....||+|++++-+|.+.|++|+.+.|+...  ....++.+++...+||++..||..|.....|....
T Consensus         8 ~~~~ly~~~~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~gkVPvL~d~g~~l~ES~aI~~YL   81 (247)
T 2c3n_A            8 MGLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYL   81 (247)
T ss_dssp             -CEEEEECTTSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             cceEEeecCCChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCcCcEEEECCEEEEcHHHHHHHH
Confidence            5799999999999999999999999999998887432  23456777788899999999999888887776543

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=97.57  E-value=0.00021  Score=61.02  Aligned_cols=70  Identities=7%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      +++||+.+.||+|.+++-+|...|++|+.+.++.  +...++.+++...+||++..||..+.+...|.....
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   71 (198)
T 2cvd_A            2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQ--ADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLT   71 (198)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECG--GGHHHHHTTSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CcEEEEcCCCchHHHHHHHHHHcCCCceEEEeCH--HHHHHhccCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            4789999999999999999999999999998874  334567777778899999999999988887776543

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.57  E-value=3e-05  Score=60.00  Aligned_cols=57  Identities=14%  Similarity=0.288  Sum_probs=43.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      -++.|+.+||++|++....|.+.         ++.+..+|++.+++    +.+.+|..++|++++  +|+.+
T Consensus        27 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~   94 (120)
T 1mek_A           27 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESD----LAQQYGVRGYPTIKFFRNGDTA   94 (120)
T ss_dssp             EEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCS----SHHHHTCCSSSEEEEEESSCSS
T ss_pred             EEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHH----HHHHCCCCcccEEEEEeCCCcC
Confidence            46778999999999988777642         46788888887664    444568899999987  77644

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.57  E-value=0.00037  Score=58.67  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=24.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc----C-CceEEEEcC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR----G-LKFVEINVD  196 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el----g-V~y~eiDVd  196 (327)
                      ..|++|+-.+||+|.+....|.++    + +.+..+++.
T Consensus        24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p   62 (175)
T 3gyk_A           24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWP   62 (175)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             EEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            457789999999999987666543    3 456666653

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=97.57  E-value=0.00018  Score=63.92  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .++||+.+.||+|.+++-+|...|++|+.+.++..  .....++.+++...+||++..||..|.+...|....
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~YL   74 (244)
T 1ljr_A            2 GLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYL   74 (244)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eEEEEecCCCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhCCCCcCcEEEECCEEEEchHHHHHHH
Confidence            37899999999999999999999999999888753  234456777777889999999999998887776643

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=97.56  E-value=0.00025  Score=61.52  Aligned_cols=70  Identities=9%  Similarity=0.103  Sum_probs=57.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .++||+.+.||+|.+++-+|...|++|+.+.++..  +....++.+++...+||++..||..+.....|...
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   73 (218)
T 1r5a_A            2 TTVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSY   73 (218)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             eEEEEeCCCChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhCCCCCcCEEEECCEEEEcHHHHHHH
Confidence            47899999999999999999999999999988753  23345677777778999999999888877766554

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.56  E-value=7.3e-05  Score=61.24  Aligned_cols=77  Identities=18%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee---chHHHHHh-
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG---GLVALNSL-  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG---G~deL~~L-  233 (327)
                      |+.|+.+||+.|+.+...|.++     ++.|..+|++...       +.++...+|++++  +|+.++   |..++... 
T Consensus        34 vv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~-------~~~~i~~~Pt~~~~~~G~~v~~~~G~~~~~~~~  106 (135)
T 2dbc_A           34 VIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI-------EHYHDNCLPTIFVYKNGQIEGKFIGIIECGGIN  106 (135)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC-------SSCCSSCCSEEEEESSSSCSEEEESTTTTTCTT
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc-------ccCCCCCCCEEEEEECCEEEEEEEeEEeeCCCc
Confidence            5558889999999998888754     3556667776543       3467788999754  776443   33322100 


Q ss_pred             hhcCchHHHHHHhhc
Q 039225          234 RNSGTFDERFREMLG  248 (327)
Q Consensus       234 ~esGeL~~~Lk~~~~  248 (327)
                      ....+|.++|...+.
T Consensus       107 ~~~~~l~~~l~~~~~  121 (135)
T 2dbc_A          107 LKLEELEWKLSEVGA  121 (135)
T ss_dssp             CCHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHcCC
Confidence            022356777777654

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=97.55  E-value=0.0002  Score=61.94  Aligned_cols=70  Identities=11%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      ++||+.+.||+|.+++-+|...|++|+.+.++..  .....++.+++...+||++.. ||..+.....|.+..
T Consensus         1 m~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   73 (219)
T 3f6d_A            1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDGFVLWESRAIQIYL   73 (219)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CEEEeCCCCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCCCCccCeEEeCCCCEEEcHHHHHHHH
Confidence            4699999999999999999999999999888753  234567778888889999999 898888887776543

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=97.55  E-value=0.00026  Score=63.61  Aligned_cols=73  Identities=15%  Similarity=0.151  Sum_probs=59.7

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe---CCEEeechHHHHHh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL---NDKLFGGLVALNSL  233 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI---nGe~IGG~deL~~L  233 (327)
                      .++.++||+.+.||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||++..   ||..|.....|...
T Consensus        16 ~m~~~~Ly~~~~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~ES~aI~~Y   93 (260)
T 1k0d_A           16 PLEGYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLH   93 (260)
T ss_dssp             CSSSEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHH
T ss_pred             CCCcEEEEcCCCCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhCCCCCcCEEEecCCCCeEEECHHHHHHH
Confidence            34679999999999999999999999999999888753  234456777777889999998   78888877766654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.55  E-value=0.00012  Score=64.30  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK  222 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe  222 (327)
                      |+.|+.+||++|+++...|+++     ++.+..+|++.+++    +.+.+|..++|++++||+
T Consensus       140 ~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~G~  198 (229)
T 2ywm_A          140 IWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQD----LAEQFQVVGVPKIVINKG  198 (229)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHH----HHHHTTCCSSSEEEEGGG
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHHcCCcccCEEEECCE
Confidence            4459999999999999888765     57788888886654    556678999999999887

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=97.55  E-value=0.00019  Score=63.77  Aligned_cols=70  Identities=10%  Similarity=0.126  Sum_probs=58.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC-CCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS-SQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~-~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ..++||+.++||+|.+++-+|...|++|+.+.|+.. ....++.+++.. .+||++..||..+.....|.+.
T Consensus        11 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vPvL~~~g~~l~eS~aI~~Y   81 (231)
T 4dej_A           11 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDE-STPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEY   81 (231)
T ss_dssp             SSCEEEECSSCHHHHHHHHHHHHHTCBCEEEECCSS-CCCHHHHHHCCSSSCCSEEEETTEEEESHHHHHHH
T ss_pred             ceEEEEcCCCChHHHHHHHHHHHcCCCcEEEEcCcc-cCCHHHHHhCCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            458999999999999999999999999999988754 233466777888 8999999999888777666544

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=97.55  E-value=0.00011  Score=65.12  Aligned_cols=69  Identities=14%  Similarity=0.219  Sum_probs=57.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.|+..  ...++.+++...+||++..+|..+.....|.+.
T Consensus         2 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~nP~g~vPvL~~~~~~l~eS~aI~~Y   70 (242)
T 3ubk_A            2 VMIKLHGASISNYVNKVKLGILEKGLEYEQIRIAPS--QEEDFLKISPMGKIPVLEMDGKFIFESGAILEF   70 (242)
T ss_dssp             CCEEEESCTTCHHHHHHHHHHHHHTCCEEEECCCCC--CCHHHHTTSTTCCSCEEEETTEEECCHHHHHHH
T ss_pred             CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEecCCc--cCHHHHhcCCCCCcCeEEECCceEecHHHHHHH
Confidence            348999999999999999999999999999999543  335677778888999999999877776666543

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=97.54  E-value=0.0002  Score=63.80  Aligned_cols=71  Identities=8%  Similarity=0.135  Sum_probs=58.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCE---EeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDK---LFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe---~IGG~deL~~L  233 (327)
                      .++++||+.+.||+|.+++-+|..+|++|+.+.|+... ..+++.+++...+||++.. ||.   .|.....|.+.
T Consensus        24 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~~~~l~eS~aI~~y   98 (246)
T 3rbt_A           24 TDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLR-LPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICDY   98 (246)
T ss_dssp             CSSEEEEECTTCHHHHHHHHHHHHTTBCEEEEECCSSS-CCHHHHHHCTTCBSCEEEECCTTSCEEECCHHHHHHH
T ss_pred             CCceEEEecCCCccHHHHHHHHHHcCCCceEEEeCccc-CCHHHHHhCCCCCCCEEEecCCCCceeeeCHHHHHHH
Confidence            46799999999999999999999999999999887643 2345777888899999999 887   77776666543

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=97.54  E-value=0.0002  Score=62.28  Aligned_cols=73  Identities=12%  Similarity=0.246  Sum_probs=57.5

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCC--ceEEEEcCCC--hhHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGL--KFVEINVDVF--PPREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSL  233 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV--~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L  233 (327)
                      ++.+++||+.++||+|.+++-+|..+|+  +|+.+.|+..  .....++.+++...+||++. .||..|.....|...
T Consensus        15 M~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   92 (233)
T 3ibh_A           15 MKQKMIIYDTPAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAITEY   92 (233)
T ss_dssp             ----CEEEECTTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCTTCCSCEEECTTCCEEESHHHHHHH
T ss_pred             cccceEEecCCCCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCCCCccceEEecCCeEEecHHHHHHH
Confidence            3457999999999999999999999999  9998888643  23456777788889999999 688888877766554

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=97.54  E-value=0.00017  Score=62.14  Aligned_cols=68  Identities=12%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L  233 (327)
                      ++||+.+.||+|.+++-+|...|++|+.+.|+.... ..++.+++...+||++. .||..+.....|.+.
T Consensus         3 ~~Ly~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   71 (213)
T 3m0f_A            3 LKLIGMLDSPYVRRVAISLKSLGLPFEHHSLSVFST-FEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDY   71 (213)
T ss_dssp             CEEESCTTSHHHHHHHHHHHHHTCCCEEECCCTTTT-HHHHHHHCTTCCSSEEECTTCCEEESHHHHHHH
T ss_pred             EEEecCCCCCcHHHHHHHHHHCCCCcEEEEecCCCC-cHHHHhcCCCCCcCeEEeCCCcEEEcHHHHHHH
Confidence            789999999999999999999999999998875433 46777888888999998 688888777766554

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=97.53  E-value=0.00026  Score=62.03  Aligned_cols=71  Identities=10%  Similarity=0.170  Sum_probs=58.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCC-----------EEeechHH
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLND-----------KLFGGLVA  229 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInG-----------e~IGG~de  229 (327)
                      .+++||+.+.|++|.+++-+|..+|++|+.+.|+..  .....++.+++...+||+|.++|           ..|.....
T Consensus         8 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~~~~~~~~l~eS~a   87 (235)
T 3n5o_A            8 PNFELYGYFRSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNPTNTVPLLVVSNINNTVSPSSASFSIGQSLA   87 (235)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEEESSCCSSSTTCSEEEECSHHH
T ss_pred             CCeEEEecCCCcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCCCCCCCEEEeCCCccccccccCceeehhHHH
Confidence            469999999999999999999999999999888742  33446778888889999999988           77776665


Q ss_pred             HHHh
Q 039225          230 LNSL  233 (327)
Q Consensus       230 L~~L  233 (327)
                      |.+.
T Consensus        88 I~~y   91 (235)
T 3n5o_A           88 ALEY   91 (235)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.53  E-value=2.2e-05  Score=62.23  Aligned_cols=79  Identities=16%  Similarity=0.330  Sum_probs=55.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~e  235 (327)
                      .-|+.|+.+||++|+++...|+++     ++.+..+|++.+.+    +.+.+|...+|++++  +|+.++.+...    .
T Consensus        38 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~g~----~  109 (130)
T 1wmj_A           38 VVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKE----VAEKYNVEAMPTFLFIKDGAEADKVVGA----R  109 (130)
T ss_dssp             BCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGG----GHHHHTCCSSCCCCBCTTTTCCBCCCTT----C
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHH----HHHHcCCCccceEEEEeCCeEEEEEeCC----C
Confidence            346778899999999888777654     57788888887665    444568889999987  78765433221    2


Q ss_pred             cCchHHHHHHhhcc
Q 039225          236 SGTFDERFREMLGR  249 (327)
Q Consensus       236 sGeL~~~Lk~~~~~  249 (327)
                      ..+|.++|++....
T Consensus       110 ~~~l~~~l~~~~~~  123 (130)
T 1wmj_A          110 KDDLQNTIVKHVGA  123 (130)
T ss_dssp             TTTHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhc
Confidence            34678888776643

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=97.52  E-value=0.00012  Score=64.72  Aligned_cols=71  Identities=14%  Similarity=0.217  Sum_probs=57.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      .++++||+.+.||+|.+++-+|...|++|+.+.|+... ...++.+++...+||++.+ ||..+.....|...
T Consensus        21 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   92 (239)
T 3q18_A           21 EGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRN-KPEWYYTKHPFGHIPVLETSQSQLIYESVIACEY   92 (239)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCSSS-CCGGGGGTSTTCCSCEEECTTCCEECSHHHHHHH
T ss_pred             CCeEEEEeCCCChHHHHHHHHHHHcCCCcEEEecCccc-CCHHHHhcCCCCCCCEEEeCCCceeecHHHHHHH
Confidence            45799999999999999999999999999999887542 1223556677889999999 88888777766554

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=97.51  E-value=0.00022  Score=63.01  Aligned_cols=79  Identities=19%  Similarity=0.321  Sum_probs=53.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLRN  235 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~e  235 (327)
                      -|+.|+.+||++|+.....|.++    +  +.+..+|++.+++    +.+.+|...+|++++  +|+.+.-+...   ..
T Consensus        33 vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~G~---~~  105 (222)
T 3dxb_A           33 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAATKVGA---LS  105 (222)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTT----TGGGGTCCSBSEEEEEETTEEEEEEESC---CC
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHH----HHHHcCCCcCCEEEEEECCeEEEEeccc---cC
Confidence            46668899999999998877654    2  6788888887665    344578899999877  88755422211   12


Q ss_pred             cCchHHHHHHhhcc
Q 039225          236 SGTFDERFREMLGR  249 (327)
Q Consensus       236 sGeL~~~Lk~~~~~  249 (327)
                      ..+|.++|+.....
T Consensus       106 ~~~l~~~l~~~l~~  119 (222)
T 3dxb_A          106 KGQLKEFLDANLAG  119 (222)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHhhccc
Confidence            23556777776543

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=97.49  E-value=0.00029  Score=61.97  Aligned_cols=71  Identities=15%  Similarity=0.180  Sum_probs=59.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      |..++||+.+.||+|.+++-+|...|++|+.+.++.  +...++.+++...+||.+..||..|.+...|....
T Consensus        25 m~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~--~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~YL   95 (225)
T 2hnl_A           25 MEKYTLTYFNGRGRAEVIRLLFALANVSYEDNRITR--DEWKYLKPRTPFGHVPMLNVSGNVLGESHAIELLL   95 (225)
T ss_dssp             CCCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHCCCCeeEEEeCh--hhhHHhccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            456999999999999999999999999999998874  33456667777889999999999888887776543

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.49  E-value=0.0002  Score=57.38  Aligned_cols=61  Identities=26%  Similarity=0.524  Sum_probs=43.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHH--Hc------CCceEEEEcCCChhHHHHHHHHhCC---CCccEEEe---CCEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFK--QR------GLKFVEINVDVFPPREKELIRRTGS---SQVPQVFL---NDKLF  224 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~--el------gV~y~eiDVd~d~e~~~eL~~ltG~---~tVPqIFI---nGe~I  224 (327)
                      .-++.|+.+||++|++....|.  +.      ++.+..+|++... ...++.+.+|.   ..+|++++   +|+.+
T Consensus        31 ~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~-~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           31 PTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFD-RNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTT-SSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             cEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCccc-chHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            3466688999999999988887  32      5677788883211 12346667788   89999865   78765

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.49  E-value=0.00023  Score=63.15  Aligned_cols=66  Identities=21%  Similarity=0.295  Sum_probs=47.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCC---Ch-------------------------------------
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDV---FP-------------------------------------  199 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~---d~-------------------------------------  199 (327)
                      ..|++|+.+|||||++....|+++   ++.+..+.+..   ++                                     
T Consensus        88 ~~vv~F~d~~Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~~~~v  167 (216)
T 1eej_A           88 HVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDI  167 (216)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCCH
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHHHHHH
Confidence            458889999999999998777665   66666555421   11                                     


Q ss_pred             hHHHHHHHHhCCCCccEEEe-CCEEeechH
Q 039225          200 PREKELIRRTGSSQVPQVFL-NDKLFGGLV  228 (327)
Q Consensus       200 e~~~eL~~ltG~~tVPqIFI-nGe~IGG~d  228 (327)
                      +...++.+..|...+|++|+ ||+.+.|+.
T Consensus       168 ~~~~~l~~~~gV~gtPt~v~~dG~~~~G~~  197 (216)
T 1eej_A          168 ADHYALGVQLGVSGTPAVVLSNGTLVPGYQ  197 (216)
T ss_dssp             HHHHHHHHHHTCCSSSEEECTTSCEEESCC
T ss_pred             HHHHHHHHHcCCCccCEEEEcCCeEecCCC
Confidence            12234556679999999998 888887764

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=97.49  E-value=0.00019  Score=65.85  Aligned_cols=70  Identities=16%  Similarity=0.352  Sum_probs=54.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC--C--EEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN--D--KLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn--G--e~IGG~deL~~L~  234 (327)
                      ++.++||+.++||+|.+++.+|.++|++|+.++|+...  ..++ ++++..+||+|.++  |  ..+.....|....
T Consensus        12 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~~~g~~~~l~eS~aI~~yL   85 (290)
T 1z9h_A           12 RLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVL--RAEI-KFSSYRKVPILVAQEGESSQQLNDSSVIISAL   85 (290)
T ss_dssp             -CEEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTT--CGGG-TTCSCCSSCEEEEEETTEEEEECSHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCCeEEEECChhh--HHHH-HHcCCCCCCEEEECCCCCeEEecCHHHHHHHH
Confidence            35699999999999999999999999999999997321  1123 46788999999985  3  5777777666543

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=97.47  E-value=0.00096  Score=54.41  Aligned_cols=80  Identities=11%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhH---------------------HHHHHHHhCCCCcc
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPR---------------------EKELIRRTGSSQVP  215 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~---------------------~~eL~~ltG~~tVP  215 (327)
                      -|+.|+.+||++|.+....|.++       ++.+..++++.+.+.                     ...+.+.+|...+|
T Consensus        32 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P  111 (152)
T 2lrn_A           32 VLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFP  111 (152)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSC
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCC
Confidence            35568889999999877666543       356666777754321                     34566778889999


Q ss_pred             EEEe---CCEEeechHHHHHhhhcCchHHHHHHhhcc
Q 039225          216 QVFL---NDKLFGGLVALNSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       216 qIFI---nGe~IGG~deL~~L~esGeL~~~Lk~~~~~  249 (327)
                      .+|+   +|+.++..-      ...+|.+.|+++..+
T Consensus       112 ~~~lid~~G~i~~~~~------~~~~l~~~l~~l~~~  142 (152)
T 2lrn_A          112 HIILVDPEGKIVAKEL------RGDDLYNTVEKFVNG  142 (152)
T ss_dssp             EEEEECTTSEEEEECC------CTTHHHHHHHHHHTS
T ss_pred             eEEEECCCCeEEEeeC------CHHHHHHHHHHHHhh
Confidence            9764   688776651      223567777776643

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=97.45  E-value=0.00022  Score=62.00  Aligned_cols=70  Identities=13%  Similarity=0.256  Sum_probs=47.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh----hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP----PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~----e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .++||+.+.||+|.+++-+|...|++|+.+.|+...    ....++.+++...+||.|..||..|.....|.+.
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   75 (222)
T 3niv_A            2 SLILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDY   75 (222)
T ss_dssp             --CEEECTTCHHHHHHHHHHHHTTCCCCEEECCC-------------------CCSEEEETTEEEECHHHHHHH
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCCCCCcCEEEECCEEeecHHHHHHH
Confidence            367999999999999999999999999988887532    2445677777888999999999988887766654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.45  E-value=0.00017  Score=63.95  Aligned_cols=65  Identities=18%  Similarity=0.341  Sum_probs=46.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCC---Ch-------------------------------------
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDV---FP-------------------------------------  199 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~---d~-------------------------------------  199 (327)
                      ..|++|+-+|||||++....|+++   ++.+..+.+..   ++                                     
T Consensus        88 ~~vv~F~d~~Cp~C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~~~~v  167 (211)
T 1t3b_A           88 HVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNIV  167 (211)
T ss_dssp             EEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSHH
T ss_pred             EEEEEEECCCCHhHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHHHHHH
Confidence            458889999999999998777664   56666554431   11                                     


Q ss_pred             hHHHHHHHHhCCCCccEEEe-CCEEeech
Q 039225          200 PREKELIRRTGSSQVPQVFL-NDKLFGGL  227 (327)
Q Consensus       200 e~~~eL~~ltG~~tVPqIFI-nGe~IGG~  227 (327)
                      +...++.+..|...+|.+|+ ||+.+.|+
T Consensus       168 ~~~~~l~~~~gV~gTPt~vi~nG~~~~G~  196 (211)
T 1t3b_A          168 KKHYELGIQFGVRGTPSIVTSTGELIGGY  196 (211)
T ss_dssp             HHHHHHHHHHTCCSSCEEECTTSCCCCSC
T ss_pred             HHHHHHHHHcCCCcCCEEEEeCCEEecCC
Confidence            01123455679999999999 99988776

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.45  E-value=0.00062  Score=55.29  Aligned_cols=62  Identities=11%  Similarity=0.201  Sum_probs=45.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcCCCh-----hHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVDVFP-----PREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd~d~-----e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||++|++....|.++    ++.+..+|++...     +...++.+.+|...+|++++  +|+.++
T Consensus        34 vlv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~G~~v~  106 (135)
T 3emx_A           34 AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVD  106 (135)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcCCEEEE
Confidence            35668889999999998887654    5678888885432     33456777789999998865  787554

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.45  E-value=8.1e-05  Score=65.12  Aligned_cols=56  Identities=13%  Similarity=0.162  Sum_probs=45.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----C-CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----G-LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----g-V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      |+-|+.+||+.|+.+..+|.++     + +.|-.+||++.++    +...++..++|++  |.+|+++
T Consensus        45 VVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e----~a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           45 CIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPD----FNTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTTTTCCSSEEEEEEETTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEE
Confidence            3449999999999998888755     2 5688899998776    5556788999998  6799987

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.43  E-value=0.00069  Score=54.56  Aligned_cols=53  Identities=25%  Similarity=0.449  Sum_probs=40.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-|+.|+.+||++|+.....|.++      .+.+..+|++.+++    +.+.+|...+|++++
T Consensus        53 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~  111 (141)
T 3hxs_A           53 PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE----LARDFGIQSIPTIWF  111 (141)
T ss_dssp             CEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH----HHHHcCCCCcCEEEE
Confidence            346668899999999998777654      36677888886654    556678899999876

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=97.43  E-value=0.00026  Score=60.76  Aligned_cols=69  Identities=13%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++||+.++||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||.+..||..+.....|.+.
T Consensus         2 ~~Ly~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   72 (209)
T 3ein_A            2 VDFYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVDNGFALWESRAIQVY   72 (209)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEecCCCCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            5799999999999999999999999998888753  23455677777788999999999988887766554

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=97.42  E-value=0.00027  Score=60.42  Aligned_cols=69  Identities=10%  Similarity=0.080  Sum_probs=57.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||+.+.|++|.+++-+|...|++|+.+.++..  ...++.+++...+||.+..||..|.+...|.+..
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   70 (202)
T 2gsq_A            2 KYTLHYFPLMGRAELCRFVLAAHGEEFTDRVVEMA--DWPNLKATMYSNAMPVLDIDGTKMSQSMCIARHL   70 (202)
T ss_dssp             CEEEEECSSSGGGHHHHHHHHHTTCCCEEEECCTT--THHHHGGGSGGGSSCEEEETTEEECCHHHHHHHH
T ss_pred             CcEEEEcCCCchhHHHHHHHHHcCCCeeEEEeCHH--HHHhhcccCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            47899999999999999999999999999998853  2346666677789999999999888887776644

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=0.00034  Score=55.52  Aligned_cols=82  Identities=13%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHH---HH----cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe---CCEEeechHHHHH
Q 039225          163 GRISFFSRSNCRDCTAVRRFF---KQ----RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL---NDKLFGGLVALNS  232 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL---~e----lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI---nGe~IGG~deL~~  232 (327)
                      .-++.|+.+||++|++....|   ..    ++..+..+.|+.+.+....+.+.+|...+|++++   +|+.++-..... 
T Consensus        29 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~~-  107 (130)
T 2kuc_A           29 LLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVGAE-  107 (130)
T ss_dssp             CEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEESCC-
T ss_pred             eEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecCCC-
Confidence            446678889999999987766   22    2223444444433222345777789999999976   777554221110 


Q ss_pred             hhhcCchHHHHHHhh
Q 039225          233 LRNSGTFDERFREML  247 (327)
Q Consensus       233 L~esGeL~~~Lk~~~  247 (327)
                        ...+|.++|+...
T Consensus       108 --~~~~l~~~l~~~~  120 (130)
T 2kuc_A          108 --DAPELLKKVKLGV  120 (130)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHH
Confidence              1124556666654

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=97.40  E-value=0.00053  Score=60.28  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH--hCCCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR--TGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l--tG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +..++||+.+.|++|.+++-+|...|++|+.+.++..++ ..++...  +...+||++..||..+.....|.+..
T Consensus         2 m~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   75 (229)
T 1vf1_A            2 AAKPVLYYFNGRGKMESIRWLLAAAGVEFEEVFLETREQ-YEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNYI   75 (229)
T ss_dssp             -CCCEEEECSSCTTTHHHHHHHHHTTCCCEEEECCSHHH-HHHHHHHTCSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCeEEEEeCCCchhHHHHHHHHHcCCCCeeEecCcHHH-HHHHHHhcCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            346889999999999999999999999999999874332 2446565  66789999999999888887776654

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.40  E-value=0.00072  Score=56.33  Aligned_cols=61  Identities=18%  Similarity=0.322  Sum_probs=43.8

Q ss_pred             EEEEE-cCCChhHHHHHHHH---HH------cCCceEEEEcCCCh-------hHHHHHHHHhCCCCccEEEe---CCEEe
Q 039225          165 ISFFS-RSNCRDCTAVRRFF---KQ------RGLKFVEINVDVFP-------PREKELIRRTGSSQVPQVFL---NDKLF  224 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL---~e------lgV~y~eiDVd~d~-------e~~~eL~~ltG~~tVPqIFI---nGe~I  224 (327)
                      ++.|+ .+||++|++....|   .+      .++.+..+|++.+.       +...++.+.+|...+|++++   +|+.+
T Consensus        51 lv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~  130 (154)
T 2ju5_A           51 GLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQL  130 (154)
T ss_dssp             EEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred             EEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEcCCCCEE
Confidence            44566 79999999988666   22      24566777777654       34456777889999999875   78766


Q ss_pred             e
Q 039225          225 G  225 (327)
Q Consensus       225 G  225 (327)
                      +
T Consensus       131 ~  131 (154)
T 2ju5_A          131 A  131 (154)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.40  E-value=0.00041  Score=67.38  Aligned_cols=73  Identities=8%  Similarity=0.194  Sum_probs=60.7

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCC---EEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLND---KLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInG---e~IGG~deL~~L~  234 (327)
                      +..++||+.+.||+|.+++-+|..+|++|+.+.|+.......++.+++...+||++.++|   ..+.....|....
T Consensus        24 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~eS~aI~~yL   99 (471)
T 4ags_A           24 ARALKLYVSATCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINPRETVPTLEVGNADKRFMFESMLIAQYL   99 (471)
T ss_dssp             -CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCTTCCSCEEEECSSSCEEEESHHHHHHHH
T ss_pred             CCceEEECCCCCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCCCCccCeEEECCcCeEEEecHHHHHHHH
Confidence            357999999999999999999999999999999986444455677888889999999987   7777777665543

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=97.40  E-value=0.00037  Score=61.30  Aligned_cols=73  Identities=11%  Similarity=0.150  Sum_probs=59.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L~e  235 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||++. .||..|.....|.+...
T Consensus        21 ~m~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~~g~~l~eS~aI~~yL~   96 (230)
T 4hz2_A           21 QSMRIYGMNGSGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNAIGKVPVVVLDDGTALRESNAILLHFA   96 (230)
T ss_dssp             -CCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCTTCCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             hhheeeCCCCCccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCCCCCCCEEEecCCEEeeCHHHHHHHHh
Confidence            347899999999999999999999999999888753  23445677788889999999 88888888877766543

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=96.49  E-value=2.6e-05  Score=58.84  Aligned_cols=59  Identities=22%  Similarity=0.412  Sum_probs=41.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+.+||++|+++...|++..      +.+..+|++.+.+    +.+..|...+|++++  +|+.++
T Consensus        21 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   87 (106)
T 2yj7_A           21 PVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN----TAAQYGIRSIPTLLLFKNGQVVD   87 (106)
Confidence            3467788999999999988876642      4455666665443    445567788999987  787654

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.36  E-value=0.00054  Score=55.49  Aligned_cols=62  Identities=10%  Similarity=0.237  Sum_probs=45.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHH------H-Hc-CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe---CCEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFF------K-QR-GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL---NDKLF  224 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL------~-el-gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI---nGe~I  224 (327)
                      .-|+.|+.+||++|++....|      . .+ ++.+..+|++...+...++.+.+|...+|++++   +|+.+
T Consensus        33 ~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           33 PVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             CEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             cEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence            446678899999999986443      2 22 577888888766566667888889999999864   57654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=97.35  E-value=0.00072  Score=52.88  Aligned_cols=61  Identities=16%  Similarity=0.246  Sum_probs=43.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhH-------------------HHHHHHHhCCCCccEEE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPR-------------------EKELIRRTGSSQVPQVF  218 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~-------------------~~eL~~ltG~~tVPqIF  218 (327)
                      .-|+.|+.+||++|.+....|+++     ++.+..++++.+.+.                   ...+.+.+|...+|.++
T Consensus        27 ~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~  106 (136)
T 1zzo_A           27 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYA  106 (136)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSEEE
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCceEE
Confidence            346678899999999988777655     577888888653221                   12345566778999997


Q ss_pred             e---CCEE
Q 039225          219 L---NDKL  223 (327)
Q Consensus       219 I---nGe~  223 (327)
                      +   +|+.
T Consensus       107 ~id~~g~i  114 (136)
T 1zzo_A          107 FVDPHGNV  114 (136)
T ss_dssp             EECTTCCE
T ss_pred             EECCCCCE
Confidence            7   7876

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=97.34  E-value=0.00011  Score=62.58  Aligned_cols=69  Identities=9%  Similarity=0.106  Sum_probs=54.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L~  234 (327)
                      ++||+.++||+|.+++-+|...|++|+.+.++.. ....++.+++...+||++. .||..+.....|.+..
T Consensus         1 m~Ly~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   70 (202)
T 3r2q_A            1 MKLVGSYTSPFVRKLSILLLEKGITFEFINELPY-NADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYI   70 (202)
T ss_dssp             CEEEECSSCHHHHHHHHHHHHTTCCCEEEECCTT-SSSCSCTTTCTTCCSCEEECTTSCEECSHHHHHHHH
T ss_pred             CEEEeCCCCcHHHHHHHHHHHcCCCCeEEEecCC-CCcHHHHHhCCCCCcCeEEecCCcEEecHHHHHHHH
Confidence            4699999999999999999999999999988753 1122345566778999999 6888887777665543

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.33  E-value=0.00087  Score=55.25  Aligned_cols=64  Identities=13%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             CcEEE-EEcCCChhHHHHHHHHHHc----CCceEEEEcCCChhHHHHHHHHhCCC-CccEEE--eCCEEeec
Q 039225          163 GRISF-FSRSNCRDCTAVRRFFKQR----GLKFVEINVDVFPPREKELIRRTGSS-QVPQVF--LNDKLFGG  226 (327)
Q Consensus       163 ~kVvL-Ysk~~Cp~C~~ak~iL~el----gV~y~eiDVd~d~e~~~eL~~ltG~~-tVPqIF--InGe~IGG  226 (327)
                      .+|+| |..+||+-|+.+...|+++    ++.+-.+||+..+++-.++.+.+|.. ..||++  -||+.+.-
T Consensus        25 ~~vvi~khatwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G~~v~~   96 (112)
T 3iv4_A           25 KYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGEMVWN   96 (112)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETTEEEEE
T ss_pred             CCEEEEEECCcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECCEEEEE
Confidence            44555 5567999999998888765    68899999998888888999999999 599985  49987764

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=97.33  E-value=0.00017  Score=63.52  Aligned_cols=69  Identities=10%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      ..||+.+.||||++|+-+|.++|++|+.+.|+.... .+++.+++-..+||++.. ||+.|.....|.+..
T Consensus        23 MKLy~~~~SP~~~rVr~~L~e~gi~~e~~~v~~~~~-~~~~~~~nP~gkVPvL~~~dG~~l~ES~aI~~YL   92 (225)
T 4glt_A           23 MKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLADP-ECPVADHNPLGKIPVLILPDGESLYDSRVIVEYL   92 (225)
T ss_dssp             CEEEECSSCHHHHHHHHHHHHHTCCCEEEECCTTCS-SSCGGGTCTTCCSCEEECTTSCEECSHHHHHHHH
T ss_pred             ceEecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-CHHHHHhCCCCCCCEEEeCCCCEEeehHHHHHHH
Confidence            369999999999999999999999999988875321 124566666789999987 678887777766554

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=97.31  E-value=0.00069  Score=53.07  Aligned_cols=53  Identities=17%  Similarity=0.327  Sum_probs=42.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||++|+++...|.++      ++.+..+|++.+++    +.+.+|..++|++++
T Consensus        23 ~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~   81 (122)
T 3aps_A           23 HWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ----TCQKAGIKAYPSVKL   81 (122)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHH----HHHHcCCCccceEEE
Confidence            347778999999999998888653      47888889887654    555678899999875

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=96.41  E-value=3.4e-05  Score=61.58  Aligned_cols=81  Identities=21%  Similarity=0.423  Sum_probs=48.4

Q ss_pred             cEEEEEcCCChhHHHHHHHH---HHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEe----CCEE--eechH
Q 039225          164 RISFFSRSNCRDCTAVRRFF---KQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFL----NDKL--FGGLV  228 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL---~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI----nGe~--IGG~d  228 (327)
                      -++.|+.+||++|++....|   .++    +  +.+..+|++  .+...++.+.+|...+|++++    +|+.  +.-+.
T Consensus        22 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~   99 (130)
T 2lst_A           22 VMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVD--TPEGQELARRYRVPGTPTFVFLVPKAGAWEEVGRLF   99 (130)
Confidence            35668899999999988666   332    2  334445553  222345666778889999876    4765  33222


Q ss_pred             HHHHhhhcCchHHHHHHhhcc
Q 039225          229 ALNSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       229 eL~~L~esGeL~~~Lk~~~~~  249 (327)
                      ..   ....+|.++|+...+.
T Consensus       100 G~---~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A          100 GS---RPRAEFLKELRQVCVK  117 (130)
Confidence            11   1233566666665543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.30  E-value=0.00022  Score=56.64  Aligned_cols=53  Identities=19%  Similarity=0.275  Sum_probs=40.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-|+.|+.+||++|++....|.++    +  +.+..+|++.+.+    +.+.++...+|++++
T Consensus        37 ~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~   95 (130)
T 2dml_A           37 LWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS----LGGQYGVQGFPTIKI   95 (130)
T ss_dssp             CEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHHTCCSSSEEEE
T ss_pred             eEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHcCCCccCEEEE
Confidence            447778999999999988777643    2  6677888886654    555678899999976

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=97.30  E-value=0.00036  Score=60.30  Aligned_cols=68  Identities=13%  Similarity=0.100  Sum_probs=55.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      ..++||+ ..|++|.+++-+|+..|++|+.+.++   ....++.+++...+||++.. ||..|.+...|.+..
T Consensus         2 ~~~~Ly~-~~~~~~~~v~~~l~~~gi~~e~~~~~---~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   70 (219)
T 1nhy_A            2 SQGTLYA-NFRIRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYL   70 (219)
T ss_dssp             TTCEEEC-CSSHHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHH
T ss_pred             CceEEec-CCCCChHHHHHHHHHcCCCceeeccc---CCCHHHHHHCCCCCCCeEEcCCCCEEecHHHHHHHH
Confidence            3578999 77999999999999999999999887   33345667777889999998 888888877665543

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=97.29  E-value=0.00061  Score=60.23  Aligned_cols=68  Identities=7%  Similarity=-0.071  Sum_probs=55.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      ++ +|+.+ ||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||++.. ||..|.....|.+.
T Consensus         4 ~l-Ly~~~-s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~dg~~l~eS~aI~~y   74 (238)
T 4exj_A            4 AI-LYTGP-TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNPAGIVPTLVDDKGTPITESNNILLY   74 (238)
T ss_dssp             EE-EEECS-STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             ee-EeeCC-CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCCCCCCCEEEeCCCcEEeeHHHHHHH
Confidence            45 99998 99999999999999999999888753  344567778888899999998 46888877776654

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=97.29  E-value=0.00068  Score=59.01  Aligned_cols=71  Identities=14%  Similarity=0.066  Sum_probs=57.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH--hCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR--TGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l--tG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.++..++ ..++...  +...+||++..||..|.....|....
T Consensus         2 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~yL   74 (221)
T 1k3y_A            2 EKPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYI   74 (221)
T ss_dssp             CCCEEEEESSSTTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeCCCchhHHHHHHHHHcCCCceEEEeCchhH-HHHHhhhcCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            35789999999999999999999999999999874332 2345555  66789999999999888887776543

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=97.29  E-value=0.0007  Score=58.71  Aligned_cols=68  Identities=16%  Similarity=0.143  Sum_probs=55.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC-----CCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG-----SSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG-----~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++++||+.+.|++|.+++-+|...|++|+.+.|+..+    ++.++.-     ..+||.+..||..+.....|.+..
T Consensus         3 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~----~~~~~~p~~~~p~g~vP~L~~~g~~l~eS~aI~~yL   75 (222)
T 3ik7_A            3 ARPKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETKE----QLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYI   75 (222)
T ss_dssp             CSCEEEECSSCTTTHHHHHHHHHTTCCCEEEECCSHH----HHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeCCCcchHHHHHHHHHcCCCeeEEeeCcHH----HHHHhhhcCCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence            3689999999999999999999999999999998533    3333331     478999999999888887776543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.26  E-value=0.00056  Score=59.49  Aligned_cols=54  Identities=17%  Similarity=0.293  Sum_probs=42.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc----------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR----------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el----------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      ++.|+.+||++|++....|.++          ++.+..+|++.+++    +.+.+|..++|++++  +|+
T Consensus       138 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~  203 (226)
T 1a8l_A          138 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYNVMAVPKIVIQVNGE  203 (226)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTTCCSSCEEEEEETTE
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHH----HHHhCCCcccCeEEEEeCCc
Confidence            6779999999999998877652          56778888886554    555678899999877  565

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.26  E-value=0.00037  Score=54.84  Aligned_cols=62  Identities=16%  Similarity=0.174  Sum_probs=43.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhH-H-----------------HHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPR-E-----------------KELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~-~-----------------~eL~~ltG~~tVPqIFI  219 (327)
                      .-|+.|+.+||++|.+....|.++     ++.+..++++.+++. +                 .++.+.+|...+|++++
T Consensus        26 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~l  105 (136)
T 1lu4_A           26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVF  105 (136)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEEEE
T ss_pred             EEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCEEEE
Confidence            346668899999999987777654     577888888764321 1                 23445567888999876


Q ss_pred             ---CCEEe
Q 039225          220 ---NDKLF  224 (327)
Q Consensus       220 ---nGe~I  224 (327)
                         +|+.+
T Consensus       106 id~~G~i~  113 (136)
T 1lu4_A          106 YRADGTST  113 (136)
T ss_dssp             ECTTSCEE
T ss_pred             ECCCCcEE
Confidence               67653

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=97.26  E-value=0.00054  Score=58.83  Aligned_cols=70  Identities=11%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCC-----EEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLND-----KLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInG-----e~IGG~deL~~L~  234 (327)
                      ..++||+.+.|++|.+++-+|...|++|+.+.++.. . ..++..++...+||++..+|     ..|.+...|.+..
T Consensus         4 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~-~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~yL   78 (211)
T 2wb9_A            4 QHFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMD-Q-WPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARLL   78 (211)
T ss_dssp             CEEEEEEESSCGGGHHHHHHHHHTTCCCEEEEECTT-T-HHHHGGGSGGGCSCEEEEECTTSCEEEEESHHHHHHHH
T ss_pred             CceEEEEeCCCCchHHHHHHHHHcCCCceEEEechh-h-HHHhCcCCCCCCCCEEEECCCCccceeecCHHHHHHHH
Confidence            358999999999999999999999999999998842 2 25666667778999999988     8888877766543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=97.23  E-value=0.00044  Score=57.79  Aligned_cols=56  Identities=14%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      |+.|+.+||+.|+.....|.++.      +.+..+|++..++    +.+.++..++|++++  +|+.+
T Consensus        27 lv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAV----YTQYFDISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHH----HHHHcCCCccCeEEEEECCeEE
Confidence            45588999999999998887652      5567788876654    556678889998754  78766

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=97.22  E-value=0.0005  Score=59.05  Aligned_cols=66  Identities=11%  Similarity=0.112  Sum_probs=52.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||+.+.||+|.+++-+|...|++|+.+.++.. ....++   +...+||++..+|..+.+...|.+..
T Consensus         3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~---~P~g~vP~L~~~~~~l~eS~aI~~yL   68 (214)
T 3cbu_A            3 LKLCGFAASNYYNKVKLALLEKNVPFEEVLAWIG-ETDTTA---TPAGKVPYMITESGSLCESEVINEYL   68 (214)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTCCEEEEECCTT-SSCTTT---STTCCSCEEEETTEEECSHHHHHHHH
T ss_pred             EEEecCCCCcHhHHHHHHHHhCCCCCEEEecCcc-cCCccc---CCCCCCCEEEECCeeeecHHHHHHHH
Confidence            7899999999999999999999999999988741 111122   55678999999998888777666543

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=97.22  E-value=0.00074  Score=59.54  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeC----C--EEeechHHHHH
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLN----D--KLFGGLVALNS  232 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFIn----G--e~IGG~deL~~  232 (327)
                      +++.++||+.+ ||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||++..+    |  ..|.....|..
T Consensus        19 ~~~~~~Ly~~~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~dG~~~~l~eS~aI~~   97 (244)
T 4ikh_A           19 FPEWIQLYSLP-TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILI   97 (244)
T ss_dssp             STTSEEEEECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTCTTSCSCEEEETTCGGGCCEEEESHHHHHH
T ss_pred             CCCeeEEEeCC-CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcCCCCCCCEEEecCCCCCCceeEEcHHHHHH
Confidence            45689999999 99999999999999999998888753  2345567777778899999983    5  67777776655


Q ss_pred             h
Q 039225          233 L  233 (327)
Q Consensus       233 L  233 (327)
                      .
T Consensus        98 y   98 (244)
T 4ikh_A           98 Y   98 (244)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=97.21  E-value=0.00083  Score=53.48  Aligned_cols=52  Identities=17%  Similarity=0.274  Sum_probs=40.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||++|++....|.++           ++.+..+|++.+.+    +.+..+...+|++++
T Consensus        36 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~   98 (127)
T 3h79_A           36 VFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPD----VIERMRVSGFPTMRY   98 (127)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             EEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHh----HHHhcCCccCCEEEE
Confidence            36668999999999999888775           25677788876543    556678899999854

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=97.21  E-value=0.00028  Score=61.79  Aligned_cols=69  Identities=9%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      ++||+.+.||+|.+++-+|...|++|+.+.++.... ..++.+++...+||++.+ ||..+.+...|.+..
T Consensus         3 ~~Ly~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~yL   72 (226)
T 3tou_A            3 MKLIGSHASPYTRKVRVVLAEKKIDYQFVLEDVWNA-DTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYA   72 (226)
T ss_dssp             CEEEECSSCHHHHHHHHHHHHTTCCCEEEECCTTST-TCCGGGTCTTCCSCEEECTTSCEECSHHHHHHHH
T ss_pred             EEEecCCCCchHHHHHHHHHHcCCCcEEEecCccCC-cHHHHHhCCCCCCCEEEeCCCCEeccHHHHHHHH
Confidence            689999999999999999999999999998875321 123455667789999997 777777776665543

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=97.21  E-value=0.00068  Score=61.30  Aligned_cols=72  Identities=14%  Similarity=0.129  Sum_probs=58.7

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++.+++||+.+.|++|.+++-+|...|++|+.+.++..  ...++.+++...+||++..||..|.....|.+..
T Consensus        46 ~m~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~--~~~e~~~~nP~gkVPvL~~~g~~l~ES~aI~~YL  117 (249)
T 1m0u_A           46 IKHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRD--EWPALKPTMPMGQMPVLEVDGKRVHQSISMARFL  117 (249)
T ss_dssp             -CCCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTT--THHHHGGGSGGGCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCCCeEEEEcCCcccHHHHHHHHHHcCCCcEEEEeCHH--HHHHHhhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            35569999999999999999999999999999998743  2345666666789999999999888877766543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=97.17  E-value=0.0011  Score=54.18  Aligned_cols=42  Identities=29%  Similarity=0.348  Sum_probs=28.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKEL  205 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL  205 (327)
                      -|+.|+.+||++|......|.++       ++.+..++++.+.+....+
T Consensus        37 vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~   85 (165)
T 3or5_A           37 YIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNY   85 (165)
T ss_dssp             EEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHH
T ss_pred             EEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH
Confidence            35568889999999987777544       3667777777655443333

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.14  E-value=0.00027  Score=60.10  Aligned_cols=76  Identities=14%  Similarity=0.313  Sum_probs=51.0

Q ss_pred             EEEEEcCCC--hhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNC--RDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~C--p~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L~  234 (327)
                      ++.|+.+||  +.|+.+--+|.++      .+.+..+|++..    .++...+|.+++|++  |-||+.++-....+   
T Consensus        37 lVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~----~~la~~ygV~siPTlilFkdG~~v~~~vG~~---  109 (137)
T 2qsi_A           37 VLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAE----RGLMARFGVAVCPSLAVVQPERTLGVIAKIQ---  109 (137)
T ss_dssp             EEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGH----HHHHHHHTCCSSSEEEEEECCEEEEEEESCC---
T ss_pred             EEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCC----HHHHHHcCCccCCEEEEEECCEEEEEEeCCC---
Confidence            444667799  9999998888765      245666777643    357788999999998  56999876543322   


Q ss_pred             hcCchHHHHHHhh
Q 039225          235 NSGTFDERFREML  247 (327)
Q Consensus       235 esGeL~~~Lk~~~  247 (327)
                      ...+|.++|++..
T Consensus       110 ~k~~l~~~l~~~l  122 (137)
T 2qsi_A          110 DWSSYLAQIGAML  122 (137)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            2224455555444

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=97.14  E-value=0.00059  Score=58.73  Aligned_cols=69  Identities=13%  Similarity=0.066  Sum_probs=55.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||+.+.|++|.+++-+|...|++|+.+.++....  .++.+++...+||++..||..|.....|.+..
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~--~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   70 (208)
T 1tu7_A            2 SYKLTYFSIRGLAEPIRLFLVDQDIKFIDDRIAKDDF--SSIKSQFQFGQLPCLYDGDQQIVQSGAILRHL   70 (208)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGS--TTTGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEcCCCcchHHHHHHHHHcCCCceEEEEcHHHH--HHhccCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            4789999999999999999999999999888874221  24555667789999999998888877766543

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.10  E-value=0.00025  Score=56.54  Aligned_cols=52  Identities=10%  Similarity=0.243  Sum_probs=37.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||++|++....|.++        ++.+..+|++.+..    +.+.++...+|++++
T Consensus        28 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~   87 (133)
T 2dj3_A           28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDI----TNDQYKVEGFPTIYF   87 (133)
T ss_dssp             EEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCC----CCSSCCCSSSSEEEE
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHH----HHhhcCCCcCCEEEE
Confidence            36668889999999998888653        35666777766543    333467889999965

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.09  E-value=0.00097  Score=55.21  Aligned_cols=57  Identities=9%  Similarity=0.056  Sum_probs=42.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      ++.|+.+||+.|+.....|.++      ++.+..+|++.+++    +.+.+|..++|+++  .+|+.+.
T Consensus        27 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~~~Pt~~~~~~G~~v~   91 (142)
T 1qgv_A           27 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYELYDPCTVMFFFRNKHIM   91 (142)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSCSCSSCEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHH----HHHHcCCCCCCEEEEEECCcEEE
Confidence            5568899999999998877653      36677888887664    44557888999984  4887663

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=97.09  E-value=0.00087  Score=54.14  Aligned_cols=83  Identities=18%  Similarity=0.287  Sum_probs=51.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH----c---CCceEEEEcCCChhH-H------------------HHHHHHhCCCCccEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ----R---GLKFVEINVDVFPPR-E------------------KELIRRTGSSQVPQV  217 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e----l---gV~y~eiDVd~d~e~-~------------------~eL~~ltG~~tVPqI  217 (327)
                      -|+.|+.+||++|.+....|++    +   ++.+..++++.+.+. +                  .++.+.+|...+|.+
T Consensus        33 ~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  112 (152)
T 2lja_A           33 IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRF  112 (152)
T ss_dssp             EEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCE
T ss_pred             EEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEE
Confidence            3556788999999977655543    3   355666777665421 1                  145566788889988


Q ss_pred             Ee---CCEEeechHHHHHhhhcCchHHHHHHhhcc
Q 039225          218 FL---NDKLFGGLVALNSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       218 FI---nGe~IGG~deL~~L~esGeL~~~Lk~~~~~  249 (327)
                      ||   +|+.++-...   .....+|.++|+.....
T Consensus       113 ~lid~~G~i~~~~~g---~~~~~~l~~~l~~~~~~  144 (152)
T 2lja_A          113 ILLDRDGKIISANMT---RPSDPKTAEKFNELLGL  144 (152)
T ss_dssp             EEECTTSCEEESSCC---CTTCHHHHHHHHHHHTC
T ss_pred             EEECCCCeEEEccCC---CCCHHHHHHHHHHHhcc
Confidence            76   6776653321   11233567777776654

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.08  E-value=0.00096  Score=53.27  Aligned_cols=60  Identities=18%  Similarity=0.340  Sum_probs=42.7

Q ss_pred             cEEEEEcC-------CChhHHHHHHHHHHc------CCceEEEEc-------CCChhHHHHHHHHhCCCCccEEEe--CC
Q 039225          164 RISFFSRS-------NCRDCTAVRRFFKQR------GLKFVEINV-------DVFPPREKELIRRTGSSQVPQVFL--ND  221 (327)
Q Consensus       164 kVvLYsk~-------~Cp~C~~ak~iL~el------gV~y~eiDV-------d~d~e~~~eL~~ltG~~tVPqIFI--nG  221 (327)
                      -++.|+.+       ||+.|++....|.++      ++.+..+|+       +...+    +.+.++..++|++++  +|
T Consensus        27 v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~----~~~~~~i~~~Pt~~~~~~~  102 (123)
T 1wou_A           27 IFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND----FRKNLKVTAVPTLLKYGTP  102 (123)
T ss_dssp             EEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH----HHHHHCCCSSSEEEETTSS
T ss_pred             EEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH----HHHHCCCCeeCEEEEEcCC
Confidence            35668889       999999999888763      466788888       33333    445578899999975  33


Q ss_pred             EEeech
Q 039225          222 KLFGGL  227 (327)
Q Consensus       222 e~IGG~  227 (327)
                      ..+.|.
T Consensus       103 ~~~~g~  108 (123)
T 1wou_A          103 QKLVES  108 (123)
T ss_dssp             CEEEGG
T ss_pred             ceEecc
Confidence            444444

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=97.07  E-value=0.00057  Score=59.61  Aligned_cols=71  Identities=14%  Similarity=0.164  Sum_probs=56.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH--hCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR--TGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l--tG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..++||+.+.||+|.+++-+|...|++|+.+.++..++ ..++...  +...+||++..||..|.....|....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   74 (221)
T 1b48_A            2 AKPKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETREQ-YEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYL   74 (221)
T ss_dssp             CCCEEEBCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHH-HHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHHH
T ss_pred             CceEEEEeCCCcchHHHHHHHHHcCCCceEEEeCchHh-HHHHHhcCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            45789999999999999999999999999888874222 2345544  56679999999998888877776543

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=97.06  E-value=0.0041  Score=50.28  Aligned_cols=83  Identities=13%  Similarity=0.245  Sum_probs=51.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHH------------------HHHHHHhCCCCccEEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPRE------------------KELIRRTGSSQVPQVF  218 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~------------------~eL~~ltG~~tVPqIF  218 (327)
                      -|+.|+.+||++|.+....|.++       ++.+..++++.+++..                  .++.+.+|...+|++|
T Consensus        29 vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~  108 (151)
T 2f9s_A           29 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTTF  108 (151)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSCEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCCeEE
Confidence            35668889999999887666543       5777788887654211                  2455667888999965


Q ss_pred             -e--CCEEeechHHHHHhhhcCchHHHHHHhhcc
Q 039225          219 -L--NDKLFGGLVALNSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       219 -I--nGe~IGG~deL~~L~esGeL~~~Lk~~~~~  249 (327)
                       |  +|+.+.-+...   ....+|.++|+.+...
T Consensus       109 lid~~G~i~~~~~G~---~~~~~l~~~l~~ll~~  139 (151)
T 2f9s_A          109 LINPEGKVVKVVTGT---MTESMIHDYMNLIKPG  139 (151)
T ss_dssp             EECTTSEEEEEEESC---CCHHHHHHHHHHHSCC
T ss_pred             EECCCCcEEEEEeCC---CCHHHHHHHHHHHHhh
Confidence             4  67765422110   0122456666666543

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.05  E-value=0.00041  Score=56.61  Aligned_cols=76  Identities=17%  Similarity=0.255  Sum_probs=51.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHhh---
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSLR---  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L~---  234 (327)
                      |+-|+.+||+.|+.+...|+++     ++.|..+|++..       .+.++..++|++  |-||+.++.+..+..+-   
T Consensus        27 vv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~~PT~~~fk~G~~v~~~~G~~~~gg~~   99 (118)
T 3evi_A           27 IIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGIN   99 (118)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGGCSEEEEEETTEEEEEEESTTTTTCSS
T ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCCCCEEEEEECCEEEEEEeChhhhCCCC
Confidence            4448899999999999888765     467888888853       245677899998  56998766444333221   


Q ss_pred             -hcCchHHHHHHhh
Q 039225          235 -NSGTFDERFREML  247 (327)
Q Consensus       235 -esGeL~~~Lk~~~  247 (327)
                       ...+|+.+|...+
T Consensus       100 ~~~~~le~~L~~~g  113 (118)
T 3evi_A          100 LKLEELEWKLAEVG  113 (118)
T ss_dssp             CCHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHcC
Confidence             2224556665543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.05  E-value=0.0011  Score=57.83  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=44.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      .-|+.|+.+||++|++....|.++      .+.+..+|++..++    +.+..|...+|++++  +|+.+
T Consensus       116 ~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~  181 (210)
T 3apq_A          116 LWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM----LCRMKGVNSYPSLFIFRSGMAA  181 (210)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHTTCCSSSEEEEECTTSCC
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHH----HHHHcCCCcCCeEEEEECCCce
Confidence            456779999999999998887654      26677888876653    555678899999976  77643

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=97.03  E-value=0.0019  Score=55.48  Aligned_cols=68  Identities=16%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEeC---C----EEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFLN---D----KLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFIn---G----e~IGG~deL~~L  233 (327)
                      ++||+.+ ||+|.+++-+|...|++|+.+.|+...  ....++.+++...+||++..+   |    ..+.....|.+.
T Consensus         2 ~~Ly~~~-s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~~dG~~~~l~eS~aI~~y   78 (215)
T 3gx0_A            2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY   78 (215)
T ss_dssp             EEEEECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTCTTSCSCEEEESSCTTCCSCEEEESHHHHHHH
T ss_pred             eEEEeCC-CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhCCCCCCCEEEeCCCCCCCCceEEEcHHHHHHH
Confidence            6799888 999999999999999999998887542  345567777777899999998   4    778777766654

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=97.02  E-value=0.0017  Score=52.44  Aligned_cols=84  Identities=21%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChh-HHH-----------------HHHHHhCCCCccEE-E
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPP-REK-----------------ELIRRTGSSQVPQV-F  218 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e-~~~-----------------eL~~ltG~~tVPqI-F  218 (327)
                      |+.|+.+||++|......|.++       ++.+..++++.+.+ .++                 ++.+.+|...+|.+ +
T Consensus        32 ll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~l  111 (152)
T 3gl3_A           32 YLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFL  111 (152)
T ss_dssp             EEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSSEEEE
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCCeEEE
Confidence            4558889999999877666543       46677777776543 222                 45566788899995 4


Q ss_pred             e--CCEEeechHHHHHhhhcCchHHHHHHhhcc
Q 039225          219 L--NDKLFGGLVALNSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       219 I--nGe~IGG~deL~~L~esGeL~~~Lk~~~~~  249 (327)
                      |  +|+.+........ ....+|.++|++....
T Consensus       112 id~~G~i~~~~~g~~~-~~~~~l~~~i~~~~~~  143 (152)
T 3gl3_A          112 IDRNGKVLLQHVGFRP-ADKEALEQQILAALGG  143 (152)
T ss_dssp             ECTTSBEEEEEESCCT-TTHHHHHHHHHHHTC-
T ss_pred             ECCCCCEEEEEccCCC-cCHHHHHHHHHHHHcc
Confidence            5  5664432221100 0112456666665543

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.02  E-value=0.0011  Score=64.44  Aligned_cols=72  Identities=14%  Similarity=0.157  Sum_probs=56.5

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      .+.+++||+.+.||+|.+++-+|+.+|++|+.+.|+.. ...+++.+.....+||+|.+ ||..|.....|.+.
T Consensus       249 ~~~~~~L~~~~~sp~~~rv~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y  321 (471)
T 4ags_A          249 ANGGHVLYSNLFCPFVDRARLASELRKFQMHIVEVPLH-PQPEWYKYINPRDTVPALFTPSGEAVHESQLIVQY  321 (471)
T ss_dssp             GTTSCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCCS-SCCTTHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CCCcEEEEecCCCchHHHHHHHHHHCCCCcEEEEecCC-cCcHHHHHhCCCCCcCeEEeCCCcEeecHHHHHHH
Confidence            45789999999999999999999999999999988754 22234555667789999996 77777666555443

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=97.01  E-value=0.0023  Score=55.75  Aligned_cols=72  Identities=10%  Similarity=-0.026  Sum_probs=54.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh----hHHHHHHHH----hCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP----PREKELIRR----TGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~----e~~~eL~~l----tG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++||+.+.|++|.+++-+|...|++|+.+.|+...    ...+.+...    +-..+||++..||..+.....|.+..
T Consensus         4 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~yL   83 (224)
T 3gtu_B            4 SSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSNAILRYI   83 (224)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeCCCcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEECCEEeecHHHHHHHH
Confidence            4588999999999999999999999999998887431    111223333    34578999988888888777666543

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=97.01  E-value=0.00042  Score=60.85  Aligned_cols=71  Identities=17%  Similarity=0.093  Sum_probs=56.8

Q ss_pred             cEEEEEcCCC-----hhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNC-----RDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~C-----p~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||+.+.|     ++|.+++-+|...|++|+.+.++.......++.+++...+||++..||..|.+...|.+..
T Consensus        18 ~~~Ly~~~~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   93 (230)
T 2ycd_A           18 TITVFERSPDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQPFGQIPSYEQGDLILFESGAIVMHI   93 (230)
T ss_dssp             EEEEESSCTTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTCTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             eEEEecCCCccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            6999999999     9999999999999999999888741112234455667789999999999888887776654

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.00  E-value=0.00015  Score=59.84  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=51.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHH-HHcC-------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHH
Q 039225          163 GRISFFSRSNCRDCTAVRRFF-KQRG-------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNS  232 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL-~elg-------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~  232 (327)
                      ..++.|+.+||++|+.+...+ ..+.       +.+..+||+.+..  ..+...++...+|++++  ||+.|+-....  
T Consensus        20 ~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~--~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~--   95 (116)
T 3dml_A           20 LRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP--PGLELARPVTFTPTFVLMAGDVESGRLEGY--   95 (116)
T ss_dssp             EEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC--TTCBCSSCCCSSSEEEEEETTEEEEEEECC--
T ss_pred             CEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc--hhHHHHCCCCCCCEEEEEECCEEEeeecCC--
Confidence            457889999999999986554 3332       5688899987632  12333456778999854  89877633221  


Q ss_pred             hhhcCchHHHHHHhhc
Q 039225          233 LRNSGTFDERFREMLG  248 (327)
Q Consensus       233 L~esGeL~~~Lk~~~~  248 (327)
                       .....|..+|+.+..
T Consensus        96 -~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           96 -PGEDFFWPMLARLIG  110 (116)
T ss_dssp             -CCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHh
Confidence             122345555655543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=97.00  E-value=0.0057  Score=49.30  Aligned_cols=62  Identities=15%  Similarity=0.180  Sum_probs=43.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc---C-CceEEEEcCCChhHHH-------------------HHHHHhCCCCcc-EEE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR---G-LKFVEINVDVFPPREK-------------------ELIRRTGSSQVP-QVF  218 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el---g-V~y~eiDVd~d~e~~~-------------------eL~~ltG~~tVP-qIF  218 (327)
                      .-|+.|+.+||++|.+....|+++   + +.+..++++.+++...                   ++.+.+|...+| .++
T Consensus        44 ~~ll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~~  123 (156)
T 1kng_A           44 VSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFV  123 (156)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCEEEE
T ss_pred             EEEEEEEcccCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCeEEE
Confidence            346678899999999998888876   3 7777788765433211                   344556888999 556


Q ss_pred             e--CCEEe
Q 039225          219 L--NDKLF  224 (327)
Q Consensus       219 I--nGe~I  224 (327)
                      |  +|+.+
T Consensus       124 id~~G~i~  131 (156)
T 1kng_A          124 VGREGTIV  131 (156)
T ss_dssp             ECTTSBEE
T ss_pred             EcCCCCEE
Confidence            6  67654

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=97.00  E-value=0.00045  Score=59.34  Aligned_cols=70  Identities=10%  Similarity=0.124  Sum_probs=52.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEE--EcCCCh-hHHHHHHHHhCCCCccEEE-eCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEI--NVDVFP-PREKELIRRTGSSQVPQVF-LNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~ei--DVd~d~-e~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L  233 (327)
                      .++||+.+.||+|.+++-+|...|++|+.+  ++.... ....++.+++...+||++. .||..+.....|...
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   75 (214)
T 4id0_A            2 SLTLFHNPASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDY   75 (214)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCTTCCSSEEECTTSCEECSHHHHHHH
T ss_pred             ceEEecCCCCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCCCcCCCeEEecCCcEeecHHHHHHH
Confidence            378999999999999999999999996554  444222 2223455567778999999 688877777666543

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=96.96  E-value=0.00034  Score=59.74  Aligned_cols=77  Identities=10%  Similarity=0.119  Sum_probs=52.2

Q ss_pred             cEEE-EEcCC--ChhHHHHHHHHHHcC-------CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHH
Q 039225          164 RISF-FSRSN--CRDCTAVRRFFKQRG-------LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALN  231 (327)
Q Consensus       164 kVvL-Ysk~~--Cp~C~~ak~iL~elg-------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~  231 (327)
                      .|+| |+.+|  |+.|+.+.-+|.++.       +.+..+|++.    ..++...+|.+++|++  |-||+.++-....+
T Consensus        36 ~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe----~~~lA~~ygV~sIPTlilFk~G~~v~~~~G~~  111 (140)
T 2qgv_A           36 DGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ----SEAIGDRFGAFRFPATLVFTGGNYRGVLNGIH  111 (140)
T ss_dssp             SEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH----HHHHHHHHTCCSSSEEEEEETTEEEEEEESCC
T ss_pred             CEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC----CHHHHHHcCCccCCEEEEEECCEEEEEEecCC
Confidence            3444 55667  999999988887652       4555566653    3468888999999997  66999887554332


Q ss_pred             HhhhcCchHHHHHHhh
Q 039225          232 SLRNSGTFDERFREML  247 (327)
Q Consensus       232 ~L~esGeL~~~Lk~~~  247 (327)
                         ...+|.++|++..
T Consensus       112 ---~k~~l~~~i~~~l  124 (140)
T 2qgv_A          112 ---PWAELINLMRGLV  124 (140)
T ss_dssp             ---CHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHh
Confidence               2335666666655

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=96.94  E-value=0.0018  Score=57.66  Aligned_cols=70  Identities=11%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeC-C--EEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLN-D--KLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFIn-G--e~IGG~deL~~L~  234 (327)
                      .++||+.+ ||+|.+++-+|...|++|+.+.|+..  .....++.+++...+||+|.++ |  ..+.....|.+..
T Consensus         3 m~~Ly~~~-sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~dg~~~~l~eS~aI~~YL   77 (244)
T 4ecj_A            3 MIDLYTAA-TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDRDNDDFAVFESGAILIYL   77 (244)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHH
T ss_pred             EEEEecCC-CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcCCCCCCCEEEECCCCeEEEecHHHHHHHH
Confidence            48899987 99999999999999999999888753  2344567777788899999986 4  4777776665543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.92  E-value=0.0011  Score=60.03  Aligned_cols=58  Identities=14%  Similarity=0.342  Sum_probs=44.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -|+.|+.+||+.|+.....|.+.      ++.+..+|++.++    ++.+.+|..++|++++  +|+.+.
T Consensus        29 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~G~~~~   94 (287)
T 3qou_A           29 VLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ----MIAAQFGLRAIPTVYLFQNGQPVD   94 (287)
T ss_dssp             EEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCH----HHHHTTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCH----HHHHHcCCCCCCeEEEEECCEEEE
Confidence            36668899999999988777653      2778888988765    4566778999999865  887553

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=96.92  E-value=0.0038  Score=49.94  Aligned_cols=61  Identities=21%  Similarity=0.376  Sum_probs=42.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCCh--------------------hHHHHHHHHhCCCCccE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFP--------------------PREKELIRRTGSSQVPQ  216 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~--------------------e~~~eL~~ltG~~tVPq  216 (327)
                      |+.|+.+||++|++....|.++        ++.+..++++.+.                    +...++.+.+|...+|+
T Consensus        32 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt  111 (144)
T 1o73_A           32 FLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPT  111 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSE
T ss_pred             EEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCCCCCE
Confidence            5568889999999887766543        4566777777543                    22345667778899999


Q ss_pred             EEe----CCEEee
Q 039225          217 VFL----NDKLFG  225 (327)
Q Consensus       217 IFI----nGe~IG  225 (327)
                      +|+    +|+.+.
T Consensus       112 ~~lid~~~G~i~~  124 (144)
T 1o73_A          112 LITINADTGAIIG  124 (144)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCeEEe
Confidence            864    477664

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=96.90  E-value=0.0012  Score=52.74  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=43.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH----c----CCceEEEEcCCChhH---------------------HHHHHHHhCCCCc
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ----R----GLKFVEINVDVFPPR---------------------EKELIRRTGSSQV  214 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e----l----gV~y~eiDVd~d~e~---------------------~~eL~~ltG~~tV  214 (327)
                      -|+.|+.+||++|......|.+    +    ++.+..++++.+.+.                     ...+.+.+|...+
T Consensus        36 vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~  115 (148)
T 3fkf_A           36 LLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTL  115 (148)
T ss_dssp             EEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSS
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCc
Confidence            3556888999999988766644    3    345666666654421                     2256667788999


Q ss_pred             cEEEe---CCEEeechH
Q 039225          215 PQVFL---NDKLFGGLV  228 (327)
Q Consensus       215 PqIFI---nGe~IGG~d  228 (327)
                      |.+|+   +|+.++...
T Consensus       116 P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A          116 PTNILLSPTGKILARDI  132 (148)
T ss_dssp             SEEEEECTTSBEEEESC
T ss_pred             CEEEEECCCCeEEEecC
Confidence            99765   688776554

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.89  E-value=0.00087  Score=54.20  Aligned_cols=56  Identities=25%  Similarity=0.409  Sum_probs=41.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCC------CccEEEe--CCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSS------QVPQVFL--NDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~------tVPqIFI--nGe~I  224 (327)
                      ++.|+.+||++|+++...|.++       ++.+..+|++.+++    +.+.++..      .+|++++  +|+.+
T Consensus        30 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~~~~~~~Pt~~~~~~G~~~  100 (137)
T 2dj0_A           30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTD----VSTRYKVSTSPLTKQLPTLILFQGGKEA  100 (137)
T ss_dssp             EEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHH----HHHHTTCCCCSSSSCSSEEEEESSSSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHH----HHHHccCcccCCcCCCCEEEEEECCEEE
Confidence            7778899999999988777642       46677777776554    44556776      9999864  67654

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=96.89  E-value=0.0027  Score=50.49  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=41.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChh-HHHH--------------------HHHHhCCCCccE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPP-REKE--------------------LIRRTGSSQVPQ  216 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e-~~~e--------------------L~~ltG~~tVPq  216 (327)
                      |+.|+.+||++|......|.++       ++.+..++++.+++ .++.                    +.+.+|...+|.
T Consensus        35 ll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~  114 (148)
T 3hcz_A           35 ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPV  114 (148)
T ss_dssp             EEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSSCE
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCCCE
Confidence            5558889999999876666543       46777778875543 2222                    555667788999


Q ss_pred             EEe---CCEEee
Q 039225          217 VFL---NDKLFG  225 (327)
Q Consensus       217 IFI---nGe~IG  225 (327)
                      +|+   +|+.+.
T Consensus       115 ~~lid~~G~i~~  126 (148)
T 3hcz_A          115 LYVLDKNKVIIA  126 (148)
T ss_dssp             EEEECTTCBEEE
T ss_pred             EEEECCCCcEEE
Confidence            875   677654

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=96.88  E-value=0.0023  Score=51.78  Aligned_cols=86  Identities=16%  Similarity=0.125  Sum_probs=53.8

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc----CCceEEEEcC--CChh---------------------HHHHHHHHhCCCCc
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVD--VFPP---------------------REKELIRRTGSSQV  214 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd--~d~e---------------------~~~eL~~ltG~~tV  214 (327)
                      +.-|+.|+.+||++|......|.++    ++.+..++++  .+.+                     ....+.+.+|...+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~  110 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLGQ  110 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCcc
Confidence            3446778899999999887766544    7888888883  2221                     22445566788899


Q ss_pred             cEE-Ee--CCEEeechHHHHHhhhcCchHHHHHHhhccC
Q 039225          215 PQV-FL--NDKLFGGLVALNSLRNSGTFDERFREMLGRK  250 (327)
Q Consensus       215 PqI-FI--nGe~IGG~deL~~L~esGeL~~~Lk~~~~~~  250 (327)
                      |.+ +|  +|+.++-+...   ....+|.+.|++...+.
T Consensus       111 P~~~lid~~G~i~~~~~g~---~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          111 PWTFVVDREGKVVALFAGR---AGREALLDALLLAGADL  146 (154)
T ss_dssp             CEEEEECTTSEEEEEEESB---CCHHHHHHHHHHTTCCC
T ss_pred             cEEEEECCCCCEEEEEcCC---CCHHHHHHHHHhccCcc
Confidence            995 45  67655433211   12235667777665443

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=96.84  E-value=0.004  Score=57.60  Aligned_cols=70  Identities=10%  Similarity=0.060  Sum_probs=54.8

Q ss_pred             CCcEEEEEcC---------CChhHHHHHHHH----HHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeec
Q 039225          162 KGRISFFSRS---------NCRDCTAVRRFF----KQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGG  226 (327)
Q Consensus       162 ~~kVvLYsk~---------~Cp~C~~ak~iL----~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG  226 (327)
                      +..|++|.+.         .||||.+++-+|    ...|++|+.+.|+...  .. +.+++-..+||++..  ||..|..
T Consensus        17 ~~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~--~p-fl~~nP~GkVPvL~d~~~g~~l~E   93 (291)
T 2yv9_A           17 KPLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNS--EA-FKKNFLGAQPPIMIEEEKELTYTD   93 (291)
T ss_dssp             SCEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTC--HH-HHHHHTTCCSCEEEEGGGTEEECS
T ss_pred             CCCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCC--hh-HHhcCCCCCCCEEEEcCCCeEEeC
Confidence            4569999865         499999999888    6789999998887542  23 667788899999998  8888877


Q ss_pred             hHHHHHhh
Q 039225          227 LVALNSLR  234 (327)
Q Consensus       227 ~deL~~L~  234 (327)
                      ...|.+..
T Consensus        94 S~aI~~YL  101 (291)
T 2yv9_A           94 NREIEGRI  101 (291)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=96.84  E-value=0.0023  Score=50.85  Aligned_cols=63  Identities=14%  Similarity=0.226  Sum_probs=42.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCCh-----------------------hHHHHHHHHhCCCC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFP-----------------------PREKELIRRTGSSQ  213 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~-----------------------e~~~eL~~ltG~~t  213 (327)
                      .-|+.|+.+||++|.+....|.++    +  +.+..++++...                       +....+.+.+|...
T Consensus        31 ~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  110 (148)
T 2b5x_A           31 PTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEY  110 (148)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCCCC
T ss_pred             EEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhCCCC
Confidence            446778899999999887766543    2  667777765311                       11124556678889


Q ss_pred             ccEEEe---CCEEee
Q 039225          214 VPQVFL---NDKLFG  225 (327)
Q Consensus       214 VPqIFI---nGe~IG  225 (327)
                      +|++|+   +|+.++
T Consensus       111 ~P~~~lid~~G~i~~  125 (148)
T 2b5x_A          111 VPAYYVFDKTGQLRH  125 (148)
T ss_dssp             SSEEEEECTTCBEEE
T ss_pred             CCEEEEECCCCcEEE
Confidence            999987   777654

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=96.82  E-value=0.0049  Score=49.75  Aligned_cols=61  Identities=13%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCCh--------------------hHHHHHHHHhCCCCccE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFP--------------------PREKELIRRTGSSQVPQ  216 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~--------------------e~~~eL~~ltG~~tVPq  216 (327)
                      |+.|+.+||+.|++....|.++        ++.+..++++.+.                    +...++.+.+|...+|+
T Consensus        32 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt  111 (146)
T 1o8x_A           32 FFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPT  111 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSE
T ss_pred             EEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCCCCCE
Confidence            5568889999999887666543        4567777777543                    22346777788899998


Q ss_pred             EEe----CCEEee
Q 039225          217 VFL----NDKLFG  225 (327)
Q Consensus       217 IFI----nGe~IG  225 (327)
                      +++    +|+.+.
T Consensus       112 ~~lid~~~G~i~~  124 (146)
T 1o8x_A          112 LIGVDADSGDVVT  124 (146)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCeEEE
Confidence            864    476654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=96.82  E-value=0.0025  Score=51.46  Aligned_cols=85  Identities=14%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC-hh-HH-----------------HHHHHHhCCCCcc-E
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF-PP-RE-----------------KELIRRTGSSQVP-Q  216 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d-~e-~~-----------------~eL~~ltG~~tVP-q  216 (327)
                      -|+.|+.+||++|.+....|.++       ++.+..++++.+ ++ .+                 ..+.+.+|...+| .
T Consensus        31 vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~  110 (154)
T 3kcm_A           31 VIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPET  110 (154)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCSBCEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCCCCeE
Confidence            35568889999999877666543       455666777654 22 11                 1255667888999 5


Q ss_pred             EEe--CCEEeechHHHHHhhhcCchHHHHHHhhcc
Q 039225          217 VFL--NDKLFGGLVALNSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       217 IFI--nGe~IGG~deL~~L~esGeL~~~Lk~~~~~  249 (327)
                      ++|  +|+.+..+..... ....+|.+.|+.+..+
T Consensus       111 ~lid~~G~i~~~~~g~~~-~~~~~l~~~l~~l~~~  144 (154)
T 3kcm_A          111 FVIDRHGVILKKVVGAME-WDHPEVIAFLNNELSK  144 (154)
T ss_dssp             EEECTTSBEEEEEESCCC-TTSHHHHHHHHTC---
T ss_pred             EEECCCCcEEEEEcCCCc-cccHHHHHHHHHHHHH
Confidence            556  5654432211110 0122455666665543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=96.81  E-value=0.0039  Score=50.14  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHH----------cCCceEEEEcCCChhHHHH--------------------HHHHhCCCCc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ----------RGLKFVEINVDVFPPREKE--------------------LIRRTGSSQV  214 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e----------lgV~y~eiDVd~d~e~~~e--------------------L~~ltG~~tV  214 (327)
                      |+.|+.+||+.|+.....|.+          .++.+.-++++.+.+....                    +.+.++...+
T Consensus        35 ll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~  114 (142)
T 3eur_A           35 LLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAI  114 (142)
T ss_dssp             EEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSCCTTC
T ss_pred             EEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcCCCcC
Confidence            455778999999987666655          3566777777765332111                    2344566889


Q ss_pred             cEEEe---CCEEee
Q 039225          215 PQVFL---NDKLFG  225 (327)
Q Consensus       215 PqIFI---nGe~IG  225 (327)
                      |.+|+   +|+.++
T Consensus       115 P~~~lid~~G~i~~  128 (142)
T 3eur_A          115 PTLYLLDKNKTVLL  128 (142)
T ss_dssp             SEEEEECTTCBEEE
T ss_pred             CeEEEECCCCcEEe
Confidence            99875   576664

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=96.79  E-value=0.0021  Score=58.64  Aligned_cols=72  Identities=10%  Similarity=0.080  Sum_probs=52.5

Q ss_pred             CCcEEEEEcC---------CChhHHHHHHHH----HHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH
Q 039225          162 KGRISFFSRS---------NCRDCTAVRRFF----KQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV  228 (327)
Q Consensus       162 ~~kVvLYsk~---------~Cp~C~~ak~iL----~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d  228 (327)
                      +..|++|.+.         .||||.+++.+|    +..|++|+.+.|+... ...++.+++...+||++..||..|....
T Consensus        20 ~~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~d~g~~l~ES~   98 (260)
T 2yv7_A           20 VPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQK-PPPDFRTNFEATHPPILIDNGLAILENE   98 (260)
T ss_dssp             CCEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTS-CC-----CCTTCCSCEEEETTEEECSHH
T ss_pred             CccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEecccc-CCHHHHhhCCCCCCCEEEECCEEEeCHH
Confidence            4569999642         589999999998    7889999988887531 2235666777889999999998888777


Q ss_pred             HHHHhh
Q 039225          229 ALNSLR  234 (327)
Q Consensus       229 eL~~L~  234 (327)
                      .|....
T Consensus        99 aI~~YL  104 (260)
T 2yv7_A           99 KIERHI  104 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=96.79  E-value=0.0013  Score=51.25  Aligned_cols=50  Identities=12%  Similarity=0.230  Sum_probs=38.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||++|++....|.++           ++.+..+|++..+     +.+  +..++|++++
T Consensus        27 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~--~v~~~Pt~~~   87 (121)
T 2djj_A           27 DVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-----VPD--EIQGFPTIKL   87 (121)
T ss_dssp             CEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-----CSS--CCSSSSEEEE
T ss_pred             CEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-----ccc--ccCcCCeEEE
Confidence            447779999999999998877653           4678888888655     222  7889999865

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=96.76  E-value=0.0037  Score=54.06  Aligned_cols=70  Identities=9%  Similarity=-0.007  Sum_probs=53.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--h--HHHHHHHHh----CCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--P--REKELIRRT----GSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e--~~~eL~~lt----G~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||+.+.|++|.+++-+|...|++|+.+.|+...  +  ..+.+....    -..+||++..||..|.....|....
T Consensus         3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d~~~~l~eS~aI~~yL   80 (218)
T 2c4j_A            3 MTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRYI   80 (218)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEECCeEeeeHHHHHHHH
Confidence            78999999999999999999999999988887532  1  122333332    2568999998888888877776543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=96.76  E-value=0.00078  Score=62.01  Aligned_cols=79  Identities=14%  Similarity=0.225  Sum_probs=51.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHhh---
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSLR---  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L~---  234 (327)
                      |+.|+.+||+.|+.+...|.++     ++.|..+|++.     ..+...++...+|++++  +|+.++-+..+....   
T Consensus       137 vV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-----~~l~~~~~I~~~PTll~~~~G~~v~~~vG~~~~~g~~  211 (245)
T 1a0r_P          137 VVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-----TGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEE  211 (245)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-----HCCTTSSCTTTCSEEEEEETTEEEEEETTGGGGSCTT
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-----HHHHHHCCCCCCCEEEEEECCEEEEEEeCCccccccc
Confidence            5568899999999998888765     46677777753     23444567788998754  888765443332221   


Q ss_pred             -hcCchHHHHHHhhc
Q 039225          235 -NSGTFDERFREMLG  248 (327)
Q Consensus       235 -esGeL~~~Lk~~~~  248 (327)
                       ....|..+|...+.
T Consensus       212 ~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          212 FFTGDVESFLNEYGL  226 (245)
T ss_dssp             CCHHHHHHHHHTTTC
T ss_pred             ccHHHHHHHHHHcCC
Confidence             11236677776654

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=96.73  E-value=0.0019  Score=55.33  Aligned_cols=69  Identities=10%  Similarity=0.150  Sum_probs=53.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEE-----eechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL-----FGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~-----IGG~deL~~L  233 (327)
                      ..++||+.+.|++|.+++-+|...|++|+.+.++...  ..++...+...+||++..+|..     +.+...|...
T Consensus         4 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~y   77 (211)
T 1oe8_A            4 DHIKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQD--WPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARY   77 (211)
T ss_dssp             CEEEEEESCTTSTTHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHHH
T ss_pred             CceEEEEeCCCChHHHHHHHHHHcCCCceEEEechHh--HHHhcccCCCCCCCEEEECCccccceeeccHHHHHHH
Confidence            4589999999999999999999999999999987532  2345555677899999887643     6666665554

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=96.73  E-value=0.0079  Score=49.42  Aligned_cols=62  Identities=13%  Similarity=0.311  Sum_probs=42.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcC------------------CChhH-HH----------------
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVD------------------VFPPR-EK----------------  203 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd------------------~d~e~-~~----------------  203 (327)
                      -|+.|+.+||++|......|.++     ++.+..++++                  .+.+. ++                
T Consensus        40 ~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  119 (165)
T 3ha9_A           40 VILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDD  119 (165)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEECC
T ss_pred             EEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeEEeCh
Confidence            35668899999999887776544     5666667776                  33322 11                


Q ss_pred             -HHHHHhCCCCccEEEe---CCEEee
Q 039225          204 -ELIRRTGSSQVPQVFL---NDKLFG  225 (327)
Q Consensus       204 -eL~~ltG~~tVPqIFI---nGe~IG  225 (327)
                       ++.+.+|...+|.+|+   +|+.+.
T Consensus       120 ~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A          120 GSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             SHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             HHHHHHhCCCCceEEEEEcCCCcEEE
Confidence             3444567788999987   787765

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.73  E-value=0.0044  Score=51.76  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             EEEEEcCCChhHHHH-------HHHHHHc--CCceEEEEcCCChhH---------------------HHHH-HHHhCCCC
Q 039225          165 ISFFSRSNCRDCTAV-------RRFFKQR--GLKFVEINVDVFPPR---------------------EKEL-IRRTGSSQ  213 (327)
Q Consensus       165 VvLYsk~~Cp~C~~a-------k~iL~el--gV~y~eiDVd~d~e~---------------------~~eL-~~ltG~~t  213 (327)
                      ++.|+.+||++|++.       ..+-+.+  ++.+..+|++...+.                     ...+ ...+|...
T Consensus        51 lv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  130 (172)
T 3f9u_A           51 MLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANA  130 (172)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHHHcCCCC
Confidence            445889999999986       2222222  577777888765422                     1111 45678899


Q ss_pred             ccEEE-e--CCEEe
Q 039225          214 VPQVF-L--NDKLF  224 (327)
Q Consensus       214 VPqIF-I--nGe~I  224 (327)
                      +|+++ +  +|+.+
T Consensus       131 ~Pt~~lid~~G~~~  144 (172)
T 3f9u_A          131 QPFYVLIDNEGNPL  144 (172)
T ss_dssp             SSEEEEECTTSCBS
T ss_pred             cceEEEECCCCCEE
Confidence            99975 4  57644

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=96.73  E-value=0.0026  Score=55.00  Aligned_cols=70  Identities=13%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ..++||+.+.+ .|.+++-+|...|++|+.+.|+...   ....++.+++...+||.+..||..+.....|.+.
T Consensus         2 ~~~~Ly~~~~~-~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   74 (217)
T 4hz4_A            2 VMITLHYLKQS-CSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQHPLGKAPVLQDGDLVLAEGNAIIQH   74 (217)
T ss_dssp             -CEEEEEESSS-TTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTSTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             ceEEEeecCCC-cHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcCCCCCCCEEEECCEeeecHHHHHHH
Confidence            34789998866 6999999999999999998887542   2245677777788999999999988877766554

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*

Probab=96.72  E-value=0.0045  Score=53.77  Aligned_cols=70  Identities=10%  Similarity=-0.001  Sum_probs=54.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh----hHHHHHHHHh----CCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP----PREKELIRRT----GSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~----e~~~eL~~lt----G~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||+.+.|++|.+++-+|.+.|++|+.+.|+...    ...+++....    ...+||++..||..|.....|....
T Consensus         2 ~~L~~~~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~yL   79 (219)
T 1gsu_A            2 VTLGYWDIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAILRYI   79 (219)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            57899999999999999999999999988887532    1233444443    4568999998898888887776644

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.72  E-value=0.012  Score=52.27  Aligned_cols=54  Identities=17%  Similarity=0.184  Sum_probs=39.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||++|++....|.++         ++.+..+|++.+..  .++.+.+|...+|++++
T Consensus        33 vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~--~~l~~~~~v~~~Pt~~~   95 (244)
T 3q6o_A           33 WAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN--SAVCRDFNIPGFPTVRF   95 (244)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT--HHHHHHTTCCSSSEEEE
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh--HHHHHHcCCCccCEEEE
Confidence            36678999999999998777543         35677777754322  35777789999999853

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=96.72  E-value=0.00086  Score=60.10  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=43.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEeechH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFGGLV  228 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IGG~d  228 (327)
                      -|+.|+.+||+.|+.+...|.++     ++.|..+|++ +    ..+...++...+|+|+  .+|+.++-+.
T Consensus       123 vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~----~~l~~~~~i~~~PTl~~~~~G~~v~~~~  189 (217)
T 2trc_P          123 IVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-N----TGAGDRFSSDVLPTLLVYKGGELISNFI  189 (217)
T ss_dssp             EEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-H----HTCSTTSCGGGCSEEEEEETTEEEEEET
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-c----HHHHHHCCCCCCCEEEEEECCEEEEEEe
Confidence            35668899999999999999875     4567777776 2    2344456778899865  4898765443

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=96.71  E-value=0.0047  Score=49.29  Aligned_cols=63  Identities=14%  Similarity=0.301  Sum_probs=41.2

Q ss_pred             EEEEEcCCChhHHHHHHH----------HHHcCCceEEEEcCCChhHHHHHH--------------------HHhCCCCc
Q 039225          165 ISFFSRSNCRDCTAVRRF----------FKQRGLKFVEINVDVFPPREKELI--------------------RRTGSSQV  214 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~i----------L~elgV~y~eiDVd~d~e~~~eL~--------------------~ltG~~tV  214 (327)
                      |+.|+.+||++|.+....          +.+.++.+.-++++.+.+....+.                    +.+|...+
T Consensus        31 ll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~  110 (142)
T 3ewl_A           31 MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRAT  110 (142)
T ss_dssp             EEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCCSS
T ss_pred             EEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCCCC
Confidence            445778999999996333          334567788888886554322221                    14677889


Q ss_pred             cEEEe---CCEEeech
Q 039225          215 PQVFL---NDKLFGGL  227 (327)
Q Consensus       215 PqIFI---nGe~IGG~  227 (327)
                      |.+|+   +|+.+.+.
T Consensus       111 P~~~lid~~G~i~~~~  126 (142)
T 3ewl_A          111 PTIYLLDGRKRVILKD  126 (142)
T ss_dssp             SEEEEECTTCBEEECS
T ss_pred             CeEEEECCCCCEEecC
Confidence            98765   57777643

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.71  E-value=0.004  Score=54.00  Aligned_cols=55  Identities=22%  Similarity=0.537  Sum_probs=42.4

Q ss_pred             EEEEEcC-CChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CC
Q 039225          165 ISFFSRS-NCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--ND  221 (327)
Q Consensus       165 VvLYsk~-~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nG  221 (327)
                      |+.|+.+ ||++|++++..|+++     ++.+..+|++. ++. .++.+.+|..++|++++  +|
T Consensus        26 lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~-~~~-~~~~~~~~v~~~Pt~~~~~~g   88 (226)
T 1a8l_A           26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDT-PEG-KELAKRYRIDRAPATTITQDG   88 (226)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTS-HHH-HHHHHHTTCCSSSEEEEEETT
T ss_pred             EEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCC-ccc-HHHHHHcCCCcCceEEEEcCC
Confidence            4668888 999999999999874     46678888874 112 35667789999999987  66

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=96.70  E-value=0.0013  Score=56.90  Aligned_cols=70  Identities=7%  Similarity=-0.128  Sum_probs=51.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcC--CChhHHH-HHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVD--VFPPREK-ELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd--~d~e~~~-eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||+.+.|++|.+++-+|...|++|+.+.|+  ..++... .....+-..+||++..||..|.....|.+..
T Consensus         3 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~~~~l~eS~aI~~yL   75 (218)
T 3iso_A            3 PVLGYWKIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYI   75 (218)
T ss_dssp             CEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEEECCEEEecHHHHHHHH
Confidence            67999999999999999999999999999986  1122111 1111133568999988888888777766543

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=96.68  E-value=0.0038  Score=53.33  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=55.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .++||+.++ +.|.+++-+|...|++|+.+.|+.......++.+++...+||++..||..|.+...|.+..
T Consensus         2 ~~~Ly~~~~-s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (207)
T 2x64_A            2 HMKLYIMPG-ACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALNPSGAVPALQVGDWVLTQNAAILNYI   71 (207)
T ss_dssp             CEEEEECTT-STTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTCTTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             eEEEEcCCC-CcHHHHHHHHHHcCCCcceEEecccccCChhHHhcCCCCcCCeEeECCEEEeeHHHHHHHH
Confidence            478999875 4699999999999999999988754222345666777789999999999888887776543

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=96.67  E-value=0.0019  Score=56.12  Aligned_cols=68  Identities=9%  Similarity=0.086  Sum_probs=56.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---------h----hHHHHHHHHhCCCCccEEEeCCEEeechHHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---------P----PREKELIRRTGSSQVPQVFLNDKLFGGLVALN  231 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---------~----e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~  231 (327)
                      ++||+.+.| +|.+++-+|..+|++|+.+.|+..         .    ....++.+++...+||.+..||..|.....|.
T Consensus         3 ~~Ly~~~~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~   81 (225)
T 3lsz_A            3 LKIYGVYRS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAIT   81 (225)
T ss_dssp             CEEESCSSS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCTTCCSCEEEETTEEEESHHHHH
T ss_pred             EEEEeCCCC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCcCCCCCeEEECCEEEEcHHHHH
Confidence            789999999 999999999999999999888642         0    14456777777889999999999888877766


Q ss_pred             Hh
Q 039225          232 SL  233 (327)
Q Consensus       232 ~L  233 (327)
                      +.
T Consensus        82 ~y   83 (225)
T 3lsz_A           82 LH   83 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=96.63  E-value=0.0054  Score=53.36  Aligned_cols=57  Identities=14%  Similarity=0.236  Sum_probs=43.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      -++.|+.+||++|++....|.++       +  +.+..+|++.+.+    +.+.+|...+|++++  +|+.+
T Consensus        35 v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~  102 (241)
T 3idv_A           35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV----LASRFDVSGYPTIKILKKGQAV  102 (241)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHH----HHHhcCCCcCCEEEEEcCCCcc
Confidence            36668899999999998777654       2  7788888886654    556678899999865  67655

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A*

Probab=96.62  E-value=0.0061  Score=52.67  Aligned_cols=70  Identities=13%  Similarity=-0.021  Sum_probs=52.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh----CCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT----GSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt----G~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||+.+.|++|.+++-+|...|++|+.+.|+... ..+.+....    -..+||++..||..|.....|.+..
T Consensus         1 ~~~L~y~~~~~~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL   74 (216)
T 2fhe_A            1 PAKLGYWKIRGLQQPVRLLLEYLGEKYEEQIYERDD-GEKWFSKKFELGLDLPNLPYYIDDKCKLTQSLAILRYI   74 (216)
T ss_dssp             CEEEEEESSSTTTHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHTTTSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             CcEEEEcCCCchhHHHHHHHHHcCCCceEEeeCCCc-hhhhhccccccCCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            367999899999999999999999999999887531 111222222    3568999998888888877766543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=96.61  E-value=0.0065  Score=48.79  Aligned_cols=61  Identities=15%  Similarity=0.187  Sum_probs=42.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCCh--------------------hHHHHHHHHhCCCCccE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFP--------------------PREKELIRRTGSSQVPQ  216 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~--------------------e~~~eL~~ltG~~tVPq  216 (327)
                      |+.|+.+||+.|++....|.++        ++.+..++++.+.                    +...++.+.+|...+|+
T Consensus        32 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  111 (144)
T 1i5g_A           32 FFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPT  111 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCCCCCE
Confidence            5557889999999887666543        4556677777543                    22346777788899998


Q ss_pred             EE-e---CCEEee
Q 039225          217 VF-L---NDKLFG  225 (327)
Q Consensus       217 IF-I---nGe~IG  225 (327)
                      +| |   +|+.+.
T Consensus       112 ~~lid~~~G~i~~  124 (144)
T 1i5g_A          112 LVGVEADSGNIIT  124 (144)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEECCCCcEEe
Confidence            86 4   476554

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=96.57  E-value=0.005  Score=49.98  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=25.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPR  201 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~  201 (327)
                      |+.|+.+||++|.+....|.++       ++.+..++++.....
T Consensus        28 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~   71 (151)
T 3raz_A           28 IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNI   71 (151)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHH
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHH
Confidence            4558889999999887777653       456667777643333

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=96.56  E-value=0.0027  Score=55.26  Aligned_cols=58  Identities=12%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      -++.|+.+||++|++....|.++         ++.+..+|++.+++    +.+..|..++|++++  +|+.+.
T Consensus       150 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~~  218 (241)
T 3idv_A          150 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD----LAKRFDVSGYPTLKIFRKGRPYD  218 (241)
T ss_dssp             EEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHH----HHHHcCCcccCEEEEEECCeEEE
Confidence            46678999999998775555432         27788899887654    666678899999865  787664

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.54  E-value=0.0044  Score=49.94  Aligned_cols=60  Identities=13%  Similarity=0.276  Sum_probs=38.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCCh--hH-----------------HHHHHHHhCCCCccEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFP--PR-----------------EKELIRRTGSSQVPQV  217 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~--e~-----------------~~eL~~ltG~~tVPqI  217 (327)
                      -|+.|+.+||++|.+....|+++       ++.+..++++.+.  ..                 ...+.+.+|...+|.+
T Consensus        31 ~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~  110 (153)
T 2l5o_A           31 TLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTS  110 (153)
T ss_dssp             EEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCSSSEE
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCccCeE
Confidence            36668889999999877666543       3555555543321  01                 1235556778889998


Q ss_pred             Ee---CCEE
Q 039225          218 FL---NDKL  223 (327)
Q Consensus       218 FI---nGe~  223 (327)
                      |+   +|+.
T Consensus       111 ~lid~~G~i  119 (153)
T 2l5o_A          111 VLIGKKGEI  119 (153)
T ss_dssp             EEECSSSCC
T ss_pred             EEECCCCcE
Confidence            76   6764

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=96.53  E-value=0.00053  Score=58.08  Aligned_cols=59  Identities=19%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH------cCCceEEEEcCCChhHHHHHHHHhCC--CCccEEE-e--CCEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ------RGLKFVEINVDVFPPREKELIRRTGS--SQVPQVF-L--NDKLF  224 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e------lgV~y~eiDVd~d~e~~~eL~~ltG~--~tVPqIF-I--nGe~I  224 (327)
                      .-|+.|+.+||++|+.....|.+      .++.|..+|++.+++.   +....+.  ..+|+++ +  +|+.+
T Consensus        48 ~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~---~~~~~~~~~~~~Pt~~~~d~~G~~~  117 (164)
T 1sen_A           48 PLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP---KDEDFSPDGGYIPRILFLDPSGKVH  117 (164)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTCSCSSEEEEECTTSCBC
T ss_pred             eEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchH---HHHHhcccCCcCCeEEEECCCCCEE
Confidence            34666889999999999988875      3577888888865431   2223344  6699884 4  57644

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.50  E-value=0.012  Score=49.38  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=25.8

Q ss_pred             CCcEEEEEcCCChhHHHHH----HHHHHc----CCceEEEEcC
Q 039225          162 KGRISFFSRSNCRDCTAVR----RFFKQR----GLKFVEINVD  196 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak----~iL~el----gV~y~eiDVd  196 (327)
                      +..|++|+-.+||||.+..    .+++++    ++.+..+++.
T Consensus        28 ~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           28 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            3458889999999999987    456665    4667666653

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=96.47  E-value=0.00092  Score=57.71  Aligned_cols=52  Identities=15%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHh---CCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRT---GSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~lt---G~~tVPqIFI  219 (327)
                      .|+.|+.+|||.|+.....|.++     ++.+..+|++.++    ++...+   |..++|++++
T Consensus        57 vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~----~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           57 RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAE----DDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHH----HHTTTTTTCSSCCSSEEEE
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCH----HHHHHHHHcCCCCcCeEEE
Confidence            36678899999999998888765     3456666665333    233323   4789998643

>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A*

Probab=96.45  E-value=0.0035  Score=55.04  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      .++||+.+++ .|.+++-+|...|++|+.+.|+...   ....++.+++...+||.+.. ||..|.....|.+.
T Consensus         2 ~~~Ly~~~~s-~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~eS~aI~~Y   74 (227)
T 3uar_A            2 VMKLYYFPGA-CSLAPHIVLREAGLDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQY   74 (227)
T ss_dssp             CEEEEECTTS-TTHHHHHHHHHHTCCEEEEEEETTTTEETTCCBHHHHCTTCCSCEEECTTCCEEECHHHHHHH
T ss_pred             eEEEecCCCc-chHHHHHHHHHcCCCceEEEeccCcCcccCCHHHHHhCCCCCCCeEEECCCCEEecHHHHHHH
Confidence            3789998886 4999999999999999888776432   12245667788889999998 57788777766654

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=96.42  E-value=0.012  Score=49.25  Aligned_cols=61  Identities=13%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCChh--------------------HHHHHHHHhCCCCccE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFPP--------------------REKELIRRTGSSQVPQ  216 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e--------------------~~~eL~~ltG~~tVPq  216 (327)
                      |+.|+.+||+.|++....|.++        ++.+..++++.+.+                    ...++.+.+|...+|.
T Consensus        52 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt  131 (165)
T 3s9f_A           52 FFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPT  131 (165)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCCSSSE
T ss_pred             EEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCCCCCE
Confidence            4558889999999887666543        45666777765532                    1146777788899999


Q ss_pred             EEe---C-CEEee
Q 039225          217 VFL---N-DKLFG  225 (327)
Q Consensus       217 IFI---n-Ge~IG  225 (327)
                      +||   + |+.++
T Consensus       132 ~~lid~~~G~iv~  144 (165)
T 3s9f_A          132 LIGLNADTGDTVT  144 (165)
T ss_dssp             EEEEETTTCCEEE
T ss_pred             EEEEeCCCCEEEe
Confidence            875   2 77664

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=96.37  E-value=0.013  Score=48.16  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=41.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCCChhHH-------------------HHHHHHhCCCCcc-EEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDVFPPRE-------------------KELIRRTGSSQVP-QVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~d~e~~-------------------~eL~~ltG~~tVP-qIFI  219 (327)
                      .-|+.|+.+||++|.+....|+++   ++.+..++++.+++..                   .++.+.+|...+| .++|
T Consensus        53 ~vll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~li  132 (168)
T 2b1k_A           53 PVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLI  132 (168)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccCEEEEE
Confidence            346668889999999887766543   7888888876543211                   1344456788899 5566


Q ss_pred             --CCEEe
Q 039225          220 --NDKLF  224 (327)
Q Consensus       220 --nGe~I  224 (327)
                        +|+.+
T Consensus       133 d~~G~i~  139 (168)
T 2b1k_A          133 DGNGIIR  139 (168)
T ss_dssp             CTTSBEE
T ss_pred             CCCCeEE
Confidence              46543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.37  E-value=0.01  Score=50.16  Aligned_cols=82  Identities=17%  Similarity=0.345  Sum_probs=53.7

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcC-CceEEEEcCC---Chh-------------------------------------
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRG-LKFVEINVDV---FPP-------------------------------------  200 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elg-V~y~eiDVd~---d~e-------------------------------------  200 (327)
                      +..|++|+-.+||||+++...|++++ +.+..+++-.   ++.                                     
T Consensus        15 ~~~vv~f~D~~Cp~C~~~~~~l~~l~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~~~~~~~   94 (147)
T 3gv1_A           15 KLKVAVFSDPDCPFCKRLEHEFEKMTDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGGSICDNP   94 (147)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHTTCCSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTCCCCSCS
T ss_pred             CEEEEEEECCCChhHHHHHHHHhhcCceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCccHHHHHH
Confidence            44688899999999999999998875 3444444321   111                                     


Q ss_pred             --HHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhhhcCchHHHHHHhhcc
Q 039225          201 --REKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLRNSGTFDERFREMLGR  249 (327)
Q Consensus       201 --~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~esGeL~~~Lk~~~~~  249 (327)
                        ...++....|...+|+++| ||+.+-|+...      ..|.++|+.+.++
T Consensus        95 v~~~~~la~~~gI~gtPt~vi~nG~~i~G~~~~------~~l~~~i~~~~~~  140 (147)
T 3gv1_A           95 VAETTSLGEQFGFNGTPTLVFPNGRTQSGYSPM------PQLEEIIRKNQQE  140 (147)
T ss_dssp             HHHHHHHHHHTTCCSSCEEECTTSCEEESCCCT------THHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhCCCccCEEEEECCEEeeCCCCH------HHHHHHHHHHHHh
Confidence              0122334457889999999 89888776422      3455666665543

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=96.35  E-value=0.0096  Score=54.55  Aligned_cols=72  Identities=8%  Similarity=0.045  Sum_probs=55.9

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCC----EEeechHH
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLND----KLFGGLVA  229 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInG----e~IGG~de  229 (327)
                      ++.++||+. .||+|.+++-+|.++      |++|+.+.|+..  .....++.+++...+||+|..+|    ..|.....
T Consensus        42 ~~~~~Ly~~-~sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~nP~gkVPvL~~~~g~~~~~l~ES~a  120 (288)
T 3c8e_A           42 KHPLQLYSL-GTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVFESGS  120 (288)
T ss_dssp             SSSEEEEEC-SSHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHCTTCCSCEEEETTSSSCEEEESHHH
T ss_pred             CCceEEecC-CCCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEeCCCCCceEEeCHHH
Confidence            356889987 599999999999998      999999888742  22335677778888999999976    77777776


Q ss_pred             HHHhh
Q 039225          230 LNSLR  234 (327)
Q Consensus       230 L~~L~  234 (327)
                      |....
T Consensus       121 I~~YL  125 (288)
T 3c8e_A          121 ILLYL  125 (288)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A*

Probab=96.32  E-value=0.009  Score=52.70  Aligned_cols=69  Identities=10%  Similarity=-0.100  Sum_probs=51.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHh----CCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRT----GSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~lt----G~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||+.+.|++|.+++-+|.+.|++|+.+.|+... ..+.+....    -..+||.+..||..|.....|....
T Consensus         2 ~~L~y~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL   74 (234)
T 1dug_A            2 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDE-GDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYI   74 (234)
T ss_dssp             CEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTC-HHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             cEEEEcCCCCchHHHHHHHHHcCCCceEEEeCCCc-hhhHhhhccccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            57899999999999999999999999999887531 112222222    3568999998888888777666543

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=96.32  E-value=0.013  Score=49.14  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=27.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-------cCC------ceEEEEcCC-ChhHHHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-------RGL------KFVEINVDV-FPPREKEL  205 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-------lgV------~y~eiDVd~-d~e~~~eL  205 (327)
                      |+.|+.+||++|......|++       .++      .+..++++. +++..+.+
T Consensus        63 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~  117 (183)
T 3lwa_A           63 ILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDF  117 (183)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHH
T ss_pred             EEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHH
Confidence            555888999999977655543       357      788888887 44443444

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.26  E-value=0.0091  Score=53.83  Aligned_cols=33  Identities=12%  Similarity=0.222  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH----cCCceEEEEc
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ----RGLKFVEINV  195 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e----lgV~y~eiDV  195 (327)
                      ..|++|+-++||||++....|.+    -+|.+..+.+
T Consensus        99 ~~v~~F~D~~Cp~C~~~~~~l~~~~~~g~v~v~~~~~  135 (241)
T 1v58_A           99 VIVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLV  135 (241)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             eEEEEEECCCChhHHHHHHHHHHHHhCCcEEEEEEEC
Confidence            35888999999999999665543    2477776666

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=96.26  E-value=0.022  Score=48.49  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEc
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINV  195 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDV  195 (327)
                      -.|+.|+-.+||+|.+....|.++    +  +.|..+.+
T Consensus        27 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           27 IEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            358889999999999998777644    2  44555555

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=96.22  E-value=0.0021  Score=54.76  Aligned_cols=57  Identities=16%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe---CCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL---NDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI---nGe~I  224 (327)
                      ++.|+.+||++|+.....+.+.       +..|..++|+.+..   .+....+...+|++++   +|+.+
T Consensus        48 lV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~---~~~~~~~v~~~PT~~f~~~~G~~v  114 (151)
T 3ph9_A           48 MVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETT---DKNLSPDGQYVPRIMFVDPSLTVR  114 (151)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCS---CGGGCTTCCCSSEEEEECTTSCBC
T ss_pred             EEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCch---hhHhhcCCCCCCEEEEECCCCCEE
Confidence            5558889999999988776542       23688888874321   1122356688999865   56644

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=96.20  E-value=0.024  Score=46.45  Aligned_cols=63  Identities=22%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcCCChhHHHH-------------------HHHHhCCCCccEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVDVFPPREKE-------------------LIRRTGSSQVPQV  217 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~d~e~~~e-------------------L~~ltG~~tVPqI  217 (327)
                      -|+.|+.+||+.|......|.+       .|+.+.-++++...+..+.                   +.+.+|...+|.+
T Consensus        38 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~  117 (152)
T 2lrt_A           38 VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSV  117 (152)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSCSEE
T ss_pred             EEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccCceE
Confidence            3556788999999986655543       3567777777765432221                   5566788888987


Q ss_pred             Ee---CCEEeec
Q 039225          218 FL---NDKLFGG  226 (327)
Q Consensus       218 FI---nGe~IGG  226 (327)
                      |+   +|+.+.-
T Consensus       118 ~lid~~G~i~~~  129 (152)
T 2lrt_A          118 FLVNRNNELSAR  129 (152)
T ss_dssp             EEEETTTEEEEE
T ss_pred             EEECCCCeEEEe
Confidence            65   6776653

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.18  E-value=0.0024  Score=51.25  Aligned_cols=57  Identities=19%  Similarity=0.378  Sum_probs=43.9

Q ss_pred             cEEEEEcCCCh--------------hHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CC
Q 039225          164 RISFFSRSNCR--------------DCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--ND  221 (327)
Q Consensus       164 kVvLYsk~~Cp--------------~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nG  221 (327)
                      -++.|+.+||+              +|+++...|+++      ++.+..+|++.+++    +.+.+|...+|++++  +|
T Consensus        24 vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G   99 (123)
T 1oaz_A           24 ILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNG   99 (123)
T ss_dssp             EEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT----TGGGGTCCBSSEEEEEESS
T ss_pred             EEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCccCEEEEEECC
Confidence            36668899999              999998888754      36678888887654    455678899999977  88


Q ss_pred             EEe
Q 039225          222 KLF  224 (327)
Q Consensus       222 e~I  224 (327)
                      +.+
T Consensus       100 ~~~  102 (123)
T 1oaz_A          100 EVA  102 (123)
T ss_dssp             SEE
T ss_pred             EEE
Confidence            754

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=96.16  E-value=0.0086  Score=50.59  Aligned_cols=61  Identities=20%  Similarity=0.362  Sum_probs=39.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC-------h-hHH-----------------HHHHHHhCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF-------P-PRE-----------------KELIRRTGS  211 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d-------~-e~~-----------------~eL~~ltG~  211 (327)
                      -|+.|+.+||+.|......|.++       ++.+..++++..       + ..+                 .++.+.+|.
T Consensus        49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  128 (196)
T 2ywi_A           49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYDA  128 (196)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHTC
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhCC
Confidence            35667889999999776555432       577778887531       1 111                 134455677


Q ss_pred             CCccEEEe---CCEEe
Q 039225          212 SQVPQVFL---NDKLF  224 (327)
Q Consensus       212 ~tVPqIFI---nGe~I  224 (327)
                      ..+|.+|+   +|+.+
T Consensus       129 ~~~P~~~lid~~G~i~  144 (196)
T 2ywi_A          129 ACTPDFYIFDRDLKCV  144 (196)
T ss_dssp             CEESEEEEEETTCBEE
T ss_pred             CCCCeEEEEcCCCeEE
Confidence            88998765   67755

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=96.14  E-value=0.038  Score=48.16  Aligned_cols=61  Identities=15%  Similarity=0.177  Sum_probs=39.3

Q ss_pred             EEEEEcCCChhHHHHHH-HH------HHc--CCceEEEEcCCChhHHHHH----HHHhCCCCccEEE-e--CCEEee
Q 039225          165 ISFFSRSNCRDCTAVRR-FF------KQR--GLKFVEINVDVFPPREKEL----IRRTGSSQVPQVF-L--NDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~-iL------~el--gV~y~eiDVd~d~e~~~eL----~~ltG~~tVPqIF-I--nGe~IG  225 (327)
                      ++-|+.+||++|+.+.. .|      +.+  ++-+..+|++..+++.+.+    +.++|...+|.++ +  +|+.+.
T Consensus        43 lvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v~  119 (173)
T 3ira_A           43 FLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFF  119 (173)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEE
T ss_pred             EEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCCCCcee
Confidence            44488899999998654 22      112  3555667887766654333    3345889999875 4  577663

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=96.03  E-value=0.027  Score=45.53  Aligned_cols=31  Identities=6%  Similarity=0.114  Sum_probs=20.8

Q ss_pred             EEEEEcCCChhHHH-HHHHHHHc-------CCceEEEEc
Q 039225          165 ISFFSRSNCRDCTA-VRRFFKQR-------GLKFVEINV  195 (327)
Q Consensus       165 VvLYsk~~Cp~C~~-ak~iL~el-------gV~y~eiDV  195 (327)
                      |+.|+.+||+.|.. +...|.++       ++.+.-+++
T Consensus        32 lv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~   70 (158)
T 3eyt_A           32 VIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHT   70 (158)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             EEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEe
Confidence            44588899999998 56555443       455566665

>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*

Probab=96.03  E-value=0.0046  Score=52.67  Aligned_cols=68  Identities=12%  Similarity=0.121  Sum_probs=52.3

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh---HHHHHHHHhCCCCccEEE-eCCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP---REKELIRRTGSSQVPQVF-LNDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e---~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L~  234 (327)
                      +||+.+.|+ |.+++-+|...|++|+.+.++....   ...++.+++...+||++. -||..+.....|.+..
T Consensus         2 ~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   73 (201)
T 2pvq_A            2 KLYYKVGAA-SLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYI   73 (201)
T ss_dssp             EEEECTTST-THHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCTTCCSCEEEEETTEEEESHHHHHHHH
T ss_pred             eeeeCCCcc-HHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCcCCCCCEEEeCCCCEEehHHHHHHHH
Confidence            689999997 9999999999999999988874321   123455566778999998 5888888777666543

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=96.01  E-value=0.023  Score=48.52  Aligned_cols=34  Identities=12%  Similarity=0.322  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVD  196 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd  196 (327)
                      -.|+.|+..|||+|.+....|.++      ++.|..+++.
T Consensus        27 ~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           27 IEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             eEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            358889999999999987777654      3567777775

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=96.01  E-value=0.0058  Score=49.83  Aligned_cols=63  Identities=13%  Similarity=0.122  Sum_probs=39.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC------------------------hhHHHHHHHHhCC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF------------------------PPREKELIRRTGS  211 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d------------------------~e~~~eL~~ltG~  211 (327)
                      .-|+.|+.+||++|+.....|.++       ++.+.-++++..                        .+...++.+.+|.
T Consensus        40 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  119 (164)
T 2h30_A           40 PTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNI  119 (164)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHHTTC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHHcCC
Confidence            346668889999999987776543       344444443210                        0011245566788


Q ss_pred             CCccEEEe---CCEEee
Q 039225          212 SQVPQVFL---NDKLFG  225 (327)
Q Consensus       212 ~tVPqIFI---nGe~IG  225 (327)
                      ..+|.+|+   +|+.++
T Consensus       120 ~~~P~~~lid~~G~i~~  136 (164)
T 2h30_A          120 SVYPSWALIGKDGDVQR  136 (164)
T ss_dssp             CSSSEEEEECTTSCEEE
T ss_pred             CccceEEEECCCCcEEE
Confidence            89999975   676543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=95.98  E-value=0.02  Score=46.29  Aligned_cols=31  Identities=6%  Similarity=0.128  Sum_probs=20.8

Q ss_pred             EEEEEcCCChhHHH-HHHHHHH----c---CCceEEEEc
Q 039225          165 ISFFSRSNCRDCTA-VRRFFKQ----R---GLKFVEINV  195 (327)
Q Consensus       165 VvLYsk~~Cp~C~~-ak~iL~e----l---gV~y~eiDV  195 (327)
                      |+.|+.+||+.|.. +...|.+    +   ++.+.-+++
T Consensus        34 lv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~   72 (160)
T 3lor_A           34 VVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS   72 (160)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             EEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence            45588899999998 5655543    2   355666665

>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A*

Probab=95.97  E-value=0.0037  Score=53.25  Aligned_cols=68  Identities=19%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      +||+.+.|+ |.+++-+|...|++|+.+.|+...   ....++.+++...+||++.+ ||..|.....|.+..
T Consensus         2 ~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   73 (201)
T 1n2a_A            2 KLFYKPGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYL   73 (201)
T ss_dssp             EEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eeecCCCcc-hHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCcCCCCCeEEecCCcEEecHHHHHHHH
Confidence            689988885 999999999999999887776431   12234555677789999996 777887777666543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=95.97  E-value=0.013  Score=55.79  Aligned_cols=57  Identities=19%  Similarity=0.373  Sum_probs=42.8

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      -++.|+.+||++|++....+.+.            ++.+..+|++.+.    ++.+..|...+|++++  +|+.+
T Consensus        25 vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~----~l~~~~~v~~~Pt~~~f~~G~~~   95 (382)
T 2r2j_A           25 ALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS----DIAQRYRISKYPTLKLFRNGMMM   95 (382)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH----HHHHHTTCCEESEEEEEETTEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH----HHHHhcCCCcCCEEEEEeCCcEe
Confidence            36669999999999998777542            1567778887654    4666788999999865  78754

>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}

Probab=95.94  E-value=0.02  Score=49.37  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=53.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L~  234 (327)
                      ..++||+.++ +.+.+++-+|.++|++|+.+.|+.  .+....++.+++-..+||++.++ |..|.....|.+..
T Consensus         2 ~m~kLY~~p~-s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~nP~g~vP~L~~d~g~~l~ES~aI~~YL   75 (215)
T 4gf0_A            2 VMLTLYFTPG-TISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAINPKGRVPALRLEDDTILTETGALLDYV   75 (215)
T ss_dssp             CSEEEEECTT-STHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEECTTSCEEECHHHHHHHH
T ss_pred             CcEEEEeCCC-CcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhCCCCCcceEEecCCcEEechHHHHHHH
Confidence            3478998874 467899999999999999888864  23455677777777899999886 66777766665543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.94  E-value=0.019  Score=48.13  Aligned_cols=47  Identities=17%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCC-hhHHHHHHHHhCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVF-PPREKELIRRTGS  211 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d-~e~~~eL~~ltG~  211 (327)
                      |+.|+.+||+.|......|+++       ++.+.-++++.+ ++..+.+.+..+.
T Consensus        64 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~  118 (186)
T 1jfu_A           64 LVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANL  118 (186)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTC
T ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCC
Confidence            5567889999999876665443       466777777764 2222333344444

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=94.92  E-value=0.0013  Score=52.49  Aligned_cols=34  Identities=15%  Similarity=0.294  Sum_probs=23.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVF  198 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d  198 (327)
                      |+.|+.+||+.|......|.++         ++.+..++++.+
T Consensus        30 ll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~   72 (143)
T 2lus_A           30 GFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRS   72 (143)
Confidence            5668889999999887766543         344555555543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=95.76  E-value=0.0088  Score=47.20  Aligned_cols=61  Identities=23%  Similarity=0.327  Sum_probs=39.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCC---Chh-H-----------------HHHHHHHhCCCCcc
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDV---FPP-R-----------------EKELIRRTGSSQVP  215 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~---d~e-~-----------------~~eL~~ltG~~tVP  215 (327)
                      -++.|+.+||++|......|.++       ++.+..++++.   +.+ .                 ...+.+.+|...+|
T Consensus        37 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  116 (145)
T 3erw_A           37 TILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHIITIP  116 (145)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTCCEES
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCcCccC
Confidence            36668899999999987776543       45566666653   111 1                 12455667788899


Q ss_pred             EEEe---CCEEe
Q 039225          216 QVFL---NDKLF  224 (327)
Q Consensus       216 qIFI---nGe~I  224 (327)
                      .+|+   +|+.+
T Consensus       117 ~~~lid~~G~i~  128 (145)
T 3erw_A          117 TSFLLNEKGEIE  128 (145)
T ss_dssp             EEEEECTTCCEE
T ss_pred             eEEEEcCCCcEE
Confidence            8754   46543

>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*

Probab=95.76  E-value=0.0056  Score=52.19  Aligned_cols=68  Identities=16%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh---HHHHHHHHhCCCCccEEE-eCCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP---REKELIRRTGSSQVPQVF-LNDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e---~~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L~  234 (327)
                      +||+.+.|+ |.+++-+|...|++|+.+.|+....   ...++.+++...+||++. .||..+.....|.+..
T Consensus         2 ~Ly~~~~s~-~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   73 (203)
T 1pmt_A            2 KLYYTPGSC-SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYL   73 (203)
T ss_dssp             EEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eeeccCCcc-hHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCCCCCCCeEEecCCcEEeeHHHHHHHH
Confidence            689988885 9999999999999998877764221   123455566778999998 6778888777776654

>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}

Probab=95.74  E-value=0.013  Score=52.32  Aligned_cols=71  Identities=4%  Similarity=-0.057  Sum_probs=55.6

Q ss_pred             CcEEEEEcCC-ChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHH---HHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          163 GRISFFSRSN-CRDCTAVRRFFKQRGLKFVEINVDVFPPREKELI---RRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~-Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~---~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +.++||+.++ ++.|.+++-+|.+.|++|+.+.|+.+.....++.   .++-. +||++..||..+.....|....
T Consensus        20 m~~~L~y~~g~~~~a~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~k~~nP~-kVPvL~d~g~~l~ES~AI~~YL   94 (252)
T 3h1n_A           20 MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPF-APPYLVADGMTIAQTANILLFL   94 (252)
T ss_dssp             GCEEEECCSSSCTTHHHHHHHHHHHTCCEEEGGGSTTCCHHHHHTSCCSSCCS-SSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEeCCCCCcchHHHHHHHHhCCCCceEEeecCchhhHHHHhhccCCCCC-CCCEEEECCEEeecHHHHHHHH
Confidence            4589999994 9999999999999999999999984333333443   35556 9999999999888877766544

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.023  Score=52.81  Aligned_cols=57  Identities=18%  Similarity=0.350  Sum_probs=42.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      -++.|+.+||+.|++....|.++      .+.+..+|++.+..  .++.+.+|...+|++++  +|+
T Consensus        38 vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~--~~l~~~~~I~~~Pt~~~~~~g~  102 (298)
T 3ed3_A           38 SLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN--KALCAKYDVNGFPTLMVFRPPK  102 (298)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTT--HHHHHHTTCCBSSEEEEEECCC
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccC--HHHHHhCCCCccceEEEEECCc
Confidence            36669999999999998777654      25677888874332  45777789999999865  664

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=95.72  E-value=0.0066  Score=46.98  Aligned_cols=60  Identities=22%  Similarity=0.196  Sum_probs=36.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc----CCceEEEEc--CC-----Chh-H------------------HHHHHHHhCCCCc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR----GLKFVEINV--DV-----FPP-R------------------EKELIRRTGSSQV  214 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDV--d~-----d~e-~------------------~~eL~~ltG~~tV  214 (327)
                      |+.|+.+||++|......|.++    +-.+..+-|  ..     +.+ .                  ..++.+.+|...+
T Consensus        26 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  105 (138)
T 4evm_A           26 YLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSY  105 (138)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHTTCCSS
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHcCcccC
Confidence            5557889999999887777543    323444433  11     110 1                  1235566788889


Q ss_pred             cEEEe---CCEEe
Q 039225          215 PQVFL---NDKLF  224 (327)
Q Consensus       215 PqIFI---nGe~I  224 (327)
                      |.+|+   +|+.+
T Consensus       106 P~~~lid~~G~i~  118 (138)
T 4evm_A          106 PTQAFIDKEGKLV  118 (138)
T ss_dssp             SEEEEECTTCCEE
T ss_pred             CeEEEECCCCcEE
Confidence            99876   56654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=95.70  E-value=0.054  Score=45.80  Aligned_cols=33  Identities=9%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH----cC--CceEEEEc
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ----RG--LKFVEINV  195 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e----lg--V~y~eiDV  195 (327)
                      ..|++|+-.+||||......|.+    ++  +.|..+.+
T Consensus        27 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             eEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            35888999999999988766654    33  45655655

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=95.69  E-value=0.0076  Score=50.33  Aligned_cols=58  Identities=10%  Similarity=0.192  Sum_probs=34.2

Q ss_pred             cEEEEEcCC--ChhHHHHHHHHHHc-----CCc--eEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          164 RISFFSRSN--CRDCTAVRRFFKQR-----GLK--FVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~--Cp~C~~ak~iL~el-----gV~--y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .|+.|+..|  |+.|+.....|.++     ++.  +..+|++..    .++...+|..++|++++  +|+.++
T Consensus        37 ~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~----~~la~~~~V~~iPT~~~fk~G~~v~  105 (142)
T 2es7_A           37 GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS----EAIGDRFNVRRFPATLVFTDGKLRG  105 (142)
T ss_dssp             EEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHH----HHHHHTTTCCSSSEEEEESCC----
T ss_pred             EEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCC----HHHHHhcCCCcCCeEEEEeCCEEEE
Confidence            355565555  99999988777653     356  666776632    35667789999999865  887543

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=95.68  E-value=0.073  Score=44.78  Aligned_cols=60  Identities=13%  Similarity=0.146  Sum_probs=39.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCCChhHHH-------------------HHHHHhCCCCccEE-Ee-
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDVFPPREK-------------------ELIRRTGSSQVPQV-FL-  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~d~e~~~-------------------eL~~ltG~~tVPqI-FI-  219 (327)
                      -|+.|+.+||++|.+....|+++   ++.+.-++++.+++...                   .+.+.+|...+|.+ +| 
T Consensus        61 vll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid  140 (176)
T 3kh7_A           61 ALVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLID  140 (176)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEEC
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEEC
Confidence            45668889999999887666543   78888888765443222                   23344577789944 56 


Q ss_pred             -CCEE
Q 039225          220 -NDKL  223 (327)
Q Consensus       220 -nGe~  223 (327)
                       +|+.
T Consensus       141 ~~G~i  145 (176)
T 3kh7_A          141 KQGII  145 (176)
T ss_dssp             TTCBE
T ss_pred             CCCeE
Confidence             4543

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=95.68  E-value=0.019  Score=55.89  Aligned_cols=56  Identities=11%  Similarity=0.213  Sum_probs=43.6

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----C-CceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----G-LKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----g-V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~I  224 (327)
                      ++.|+.+||++|++....|.+.     + +.+..+|++.+.+    |.+..|...+|++++  +|+.+
T Consensus        25 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Ptl~~~~~g~~~   88 (481)
T 3f8u_A           25 LVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN----TCNKYGVSGYPTLKIFRDGEEA   88 (481)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHH----HHHHTTCCEESEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHH----HHHhcCCCCCCEEEEEeCCcee
Confidence            6668999999999998887654     2 7788899987654    566678999998854  78644

>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A*

Probab=95.65  E-value=0.0055  Score=52.21  Aligned_cols=67  Identities=13%  Similarity=0.228  Sum_probs=50.4

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh---hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP---PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~---e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L  233 (327)
                      +||+.+.|+ |.+++-+|...|++|+.+.++...   ....++.+++...+||++.+ ||..+.....|.+.
T Consensus         2 ~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   72 (203)
T 2dsa_A            2 KLYYSPGAC-SLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQY   72 (203)
T ss_dssp             EEEECTTST-THHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             eeeecCCcc-hHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCCCCCCCEEEecCCcEEecHHHHHHH
Confidence            688888885 999999999999999888776421   12234555666789999996 67788777766654

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=95.53  E-value=0.035  Score=46.69  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=48.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHH----HcC--CceEEEEcCC-------Ch-hHH-----------------HHHHHHhCCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFK----QRG--LKFVEINVDV-------FP-PRE-----------------KELIRRTGSS  212 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~----elg--V~y~eiDVd~-------d~-e~~-----------------~eL~~ltG~~  212 (327)
                      -|+.|+.+||+.|.+....|+    +++  +.+..++++.       .. ..+                 .++.+.+|..
T Consensus        36 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  115 (188)
T 2cvb_A           36 LAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRAL  115 (188)
T ss_dssp             EEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCC
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence            356688899999997555444    333  4455555532       11 111                 1345566778


Q ss_pred             CccEEEe---CCEEee--chHH---HHHhhhcCchHHHHHHhhccCCC
Q 039225          213 QVPQVFL---NDKLFG--GLVA---LNSLRNSGTFDERFREMLGRKCS  252 (327)
Q Consensus       213 tVPqIFI---nGe~IG--G~de---L~~L~esGeL~~~Lk~~~~~~~~  252 (327)
                      .+|.+||   +|+.+.  ..++   ........+|.+.|+.+.++...
T Consensus       116 ~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~~  163 (188)
T 2cvb_A          116 RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP  163 (188)
T ss_dssp             EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred             CCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCCC
Confidence            8998764   566443  2211   00111344677777777665443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=95.36  E-value=0.035  Score=54.45  Aligned_cols=55  Identities=13%  Similarity=0.276  Sum_probs=43.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      -++.|+.+||++|++....+.+.       ++.+..+|++.+.    .+.+.+|...+|++++  +|+
T Consensus        34 ~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~g~   97 (504)
T 2b5e_A           34 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ----DLCMEHNIPGFPSLKIFKNSD   97 (504)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH----HHHHHTTCCSSSEEEEEETTC
T ss_pred             EEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCH----HHHHhcCCCcCCEEEEEeCCc
Confidence            36779999999999998877653       4778888888764    4666789999999855  676

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=95.35  E-value=0.037  Score=48.62  Aligned_cols=51  Identities=18%  Similarity=0.442  Sum_probs=38.6

Q ss_pred             EEEEEc-------CCChhHHHHHHHHHHc-----------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          165 ISFFSR-------SNCRDCTAVRRFFKQR-----------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       165 VvLYsk-------~~Cp~C~~ak~iL~el-----------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      |+.|+.       .||+.|+.+.-.|+++           ++.|..+|++..++    +...+|..++|+|++
T Consensus        41 vV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~----la~~~~I~siPtl~~  109 (178)
T 3ga4_A           41 ILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQ----LVKDLKLQNVPHLVV  109 (178)
T ss_dssp             EEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHH----HHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHH----HHHHcCCCCCCEEEE
Confidence            566776       3999999998887643           35677888886554    666789999999853

>1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5

Probab=95.33  E-value=0.012  Score=49.93  Aligned_cols=67  Identities=15%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hH-HHHHHHHhCCCCccEEE-eCCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PR-EKELIRRTGSSQVPQVF-LNDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~-~~eL~~ltG~~tVPqIF-InGe~IGG~deL~~L  233 (327)
                      +||+.+ +++|.+++-+|...|++|+.+.++...  .. ..++.+++...+||.+. .||..|.....|...
T Consensus         2 ~Ly~~~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   72 (201)
T 1f2e_A            2 KLFISP-GACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLY   72 (201)
T ss_dssp             EEEECT-TSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             eeeecC-CccHHHHHHHHHHcCCCceEEEeecCCCCCCCChHHHccCcCCCCceEEecCCcEeeHHHHHHHH
Confidence            588876 578999999999999999887776421  11 13466677788999998 577777777666554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=95.22  E-value=0.12  Score=43.95  Aligned_cols=53  Identities=11%  Similarity=0.218  Sum_probs=33.4

Q ss_pred             cEEE-EEcCCChhHHHHH----------HHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISF-FSRSNCRDCTAVR----------RFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvL-Ysk~~Cp~C~~ak----------~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .|+| |+.+||.+|+.+.          ++|++ +.-+..+|++  .....++.+.++...+|.++|
T Consensus        44 ~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~--~~~~~~l~~~y~v~~~P~~~f  107 (153)
T 2dlx_A           44 WLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHD--SEEGQRYIQFYKLGDFPYVSI  107 (153)
T ss_dssp             EEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESS--SHHHHHHHHHHTCCSSSEEEE
T ss_pred             eEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecC--CHhHHHHHHHcCCCCCCEEEE
Confidence            3444 6668999998873          33333 2333445553  333446777889999999854

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=95.12  E-value=0.08  Score=42.64  Aligned_cols=63  Identities=14%  Similarity=0.161  Sum_probs=41.4

Q ss_pred             EEEEEcCCChh--HHHHHHHHH----Hc----CCceEEEEcCCChh-HHH--------------------HHHHHhCCCC
Q 039225          165 ISFFSRSNCRD--CTAVRRFFK----QR----GLKFVEINVDVFPP-REK--------------------ELIRRTGSSQ  213 (327)
Q Consensus       165 VvLYsk~~Cp~--C~~ak~iL~----el----gV~y~eiDVd~d~e-~~~--------------------eL~~ltG~~t  213 (327)
                      |+.|+.+||+.  |......|.    ++    ++.+.-++++.+++ .++                    ++.+.+|...
T Consensus        37 ll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  116 (150)
T 3fw2_A           37 LINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYK  116 (150)
T ss_dssp             EEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCc
Confidence            45578899999  998765553    33    45666677775532 222                    4556678889


Q ss_pred             ccEEEe---CCEEeech
Q 039225          214 VPQVFL---NDKLFGGL  227 (327)
Q Consensus       214 VPqIFI---nGe~IGG~  227 (327)
                      +|.+|+   +|+.+.-.
T Consensus       117 ~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A          117 IPANILLSSDGKILAKN  133 (150)
T ss_dssp             SSEEEEECTTSBEEEES
T ss_pred             cCeEEEECCCCEEEEcc
Confidence            998864   57766544

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=95.11  E-value=0.041  Score=51.29  Aligned_cols=51  Identities=10%  Similarity=0.276  Sum_probs=36.6

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcC--------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRG--------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elg--------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .-++.|+.+||++|++....|.++.        +.+..+|.+...      ....+..++|++++
T Consensus       269 ~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~------~~~~~v~~~Pt~~~  327 (361)
T 3uem_A          269 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE------VEAVKVHSFPTLKF  327 (361)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB------CSSCCCCSSSEEEE
T ss_pred             cEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc------hhhcCCcccCeEEE
Confidence            3477789999999999988887652        445566666544      23467889999864

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=95.11  E-value=0.028  Score=47.78  Aligned_cols=34  Identities=18%  Similarity=0.117  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCChhHHHHH----HHHHHcC--CceEEEEc
Q 039225          162 KGRISFFSRSNCRDCTAVR----RFFKQRG--LKFVEINV  195 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak----~iL~elg--V~y~eiDV  195 (327)
                      +..|++|+-.+||+|.+..    ++.++++  +.|..+.+
T Consensus        23 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           23 KIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             CcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            3458889999999998654    4445554  44555554

>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium}

Probab=94.89  E-value=0.081  Score=50.86  Aligned_cols=74  Identities=15%  Similarity=0.168  Sum_probs=51.6

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCc----eEEEEcCC-----------------------ChhHHHHHHHHh----
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK----FVEINVDV-----------------------FPPREKELIRRT----  209 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~----y~eiDVd~-----------------------d~e~~~eL~~lt----  209 (327)
                      ..++..||....||||.+++-+|..+|++    +..++...                       .....+++.++.    
T Consensus        74 e~gry~Ly~s~~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y~~~nP~g~  153 (352)
T 3ppu_A           74 EKGRYHLYVSYACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLKVKPDYD  153 (352)
T ss_dssp             CTTSEEEEECSSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHHHHHCTTCC
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHHHHhCCCCC
Confidence            45779999999999999999999999985    33333221                       112445666664    


Q ss_pred             CCCCccEEEe---CCEEeechHHHHHhh
Q 039225          210 GSSQVPQVFL---NDKLFGGLVALNSLR  234 (327)
Q Consensus       210 G~~tVPqIFI---nGe~IGG~deL~~L~  234 (327)
                      |+.+||+|..   +|..+.....|.++.
T Consensus       154 gr~kVPvL~d~~~g~~vl~ES~aI~~YL  181 (352)
T 3ppu_A          154 GRFTVPVLWDKHTGTIVNNESSEIIRMF  181 (352)
T ss_dssp             SCCCSCEEEETTTTEEEECCHHHHHHHH
T ss_pred             CCeeeeEEEEeCCCCEEEecHHHHHHHH
Confidence            3349999998   445667776666554

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=94.62  E-value=0.056  Score=44.09  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=38.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCCh---------------hHHHHHHHHhCCCCccEE-Ee-
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFP---------------PREKELIRRTGSSQVPQV-FL-  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~---------------e~~~eL~~ltG~~tVPqI-FI-  219 (327)
                      -|+.|+.+||++|......|.++       ++.+..++++..-               +...++.+.+|...+|.+ +| 
T Consensus        44 vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid  123 (158)
T 3hdc_A           44 VLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVD  123 (158)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEEEEC
T ss_pred             EEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEEEEc
Confidence            35558889999999876666543       3445555555410               112356677888999994 45 


Q ss_pred             -CCEEe
Q 039225          220 -NDKLF  224 (327)
Q Consensus       220 -nGe~I  224 (327)
                       +|+.+
T Consensus       124 ~~G~i~  129 (158)
T 3hdc_A          124 RKGIIR  129 (158)
T ss_dssp             TTSBEE
T ss_pred             CCCCEE
Confidence             45533

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=94.55  E-value=0.0085  Score=53.61  Aligned_cols=69  Identities=10%  Similarity=-0.084  Sum_probs=49.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH---h-CCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR---T-GSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l---t-G~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +++||+.+.|++|.+++-+|.+.|++|+.+.++.. ...+.+...   . ...+||++..||..+.....|...
T Consensus         2 ~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~-~~~~~~~~~~~~~~P~g~VPvL~d~~~~l~eS~aI~~y   74 (254)
T 1bg5_A            2 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERD-EGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   74 (254)
T ss_dssp             CCBCCSCSCSTTTHHHHHHHHHTTCCCBCCCCCGG-GTHHHHHHTTTTCCSSCCSSBCCCSSCCCBSHHHHHHH
T ss_pred             CcEEEEeCCcchhHHHHHHHHHcCCCceEEeeCCC-CHHHHhhcccccCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            36789999999999999999999999998887642 111122222   1 356899998777666666665554

>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5

Probab=94.49  E-value=0.011  Score=54.58  Aligned_cols=69  Identities=12%  Similarity=-0.075  Sum_probs=49.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC---hhHHHHHHHHh-CCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF---PPREKELIRRT-GSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d---~e~~~eL~~lt-G~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++||+.+.|++|.+++-+|.++|++|+.+.|+..   +....+. .+. -..+||+|..||..|.....|.+..
T Consensus         2 ~~Lyy~~~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~ln~P~gkVPvL~d~g~~l~ES~aI~~YL   74 (280)
T 1b8x_A            2 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKF-ELGLEFPNLPYYIDGDVKLTQSMAIIRYI   74 (280)
T ss_dssp             CCCEEESSSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTT-TTCCSSCCSSBEECSSCEECSHHHHHHHH
T ss_pred             cEEEEeCCCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhh-ccCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            4578889999999999999999999988877632   1221111 122 3568999998888887777666543

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=94.30  E-value=0.051  Score=47.62  Aligned_cols=87  Identities=18%  Similarity=0.267  Sum_probs=47.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCC-------Chh-H-----------------HHHHHHHhCCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDV-------FPP-R-----------------EKELIRRTGSS  212 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~-------d~e-~-----------------~~eL~~ltG~~  212 (327)
                      |+.|+.+||+.|......|.++       ++.+.-++++.       .++ .                 ..++.+.+|..
T Consensus        63 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~  142 (218)
T 3u5r_E           63 LVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYGAA  142 (218)
T ss_dssp             EEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHTCC
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcCCC
Confidence            5557789999999776655432       46666677641       111 1                 12355556778


Q ss_pred             CccEEEe---CCEEe--echHHHHH----hhhcCchHHHHHHhhccCC
Q 039225          213 QVPQVFL---NDKLF--GGLVALNS----LRNSGTFDERFREMLGRKC  251 (327)
Q Consensus       213 tVPqIFI---nGe~I--GG~deL~~----L~esGeL~~~Lk~~~~~~~  251 (327)
                      .+|.+|+   +|+.+  |..++-..    .....+|.+.|+.+.+..+
T Consensus       143 ~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~  190 (218)
T 3u5r_E          143 CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD  190 (218)
T ss_dssp             EESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence            8888764   46544  43332100    0112345666666655443

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=94.28  E-value=0.062  Score=44.24  Aligned_cols=33  Identities=12%  Similarity=0.311  Sum_probs=22.8

Q ss_pred             EEEEE-cCCChhHHHHHHHHHHc-------CCceEEEEcCC
Q 039225          165 ISFFS-RSNCRDCTAVRRFFKQR-------GLKFVEINVDV  197 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL~el-------gV~y~eiDVd~  197 (327)
                      |+.|+ .+||+.|......|.++       |+.+.-++++.
T Consensus        33 vl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~   73 (161)
T 3drn_A           33 VLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDD   73 (161)
T ss_dssp             EEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCC
T ss_pred             EEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            44566 79999999877666543       56666666663

>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum}

Probab=93.99  E-value=0.047  Score=52.92  Aligned_cols=36  Identities=14%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCc-eEEEEcC
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK-FVEINVD  196 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~-y~eiDVd  196 (327)
                      ..+++.||+...||+|.+++-.|+.+|++ +..+|+.
T Consensus        58 e~gr~~LY~~~~cP~a~Rv~I~L~lkGL~e~i~vdl~   94 (362)
T 3m1g_A           58 EAGRYRLVAARACPWAHRTVITRRLLGLENVISLGLT   94 (362)
T ss_dssp             CTTSEEEEECTTCHHHHHHHHHHHHHTCTTTSEEEEC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHHhCCCceEEEecc
Confidence            45789999999999999999999999997 4455554

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=93.91  E-value=0.13  Score=51.73  Aligned_cols=52  Identities=21%  Similarity=0.376  Sum_probs=40.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----C----------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----G----------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----g----------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -|+.|+.+||+.|++....|.++    .          +.+..+|++..+    ++.+.++...+|++++
T Consensus        45 VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~----~la~~y~V~~~PTlil  110 (470)
T 3qcp_A           45 WIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV----DLCRKYDINFVPRLFF  110 (470)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH----HHHHHTTCCSSCEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH----HHHHHcCCCccCeEEE
Confidence            36778999999999998777653    2          667888888664    4666788999999864

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=93.84  E-value=0.075  Score=51.61  Aligned_cols=51  Identities=10%  Similarity=0.288  Sum_probs=36.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc--------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR--------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||++|++....|.++        ++.+..+|++..     ++....+...+|++++
T Consensus       373 vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-----~~~~~~~v~~~Pt~~~  431 (481)
T 3f8u_A          373 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-----DVPSPYEVRGFPTIYF  431 (481)
T ss_dssp             EEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-----CCCTTCCCCSSSEEEE
T ss_pred             EEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-----hhHhhCCCcccCEEEE
Confidence            35668899999999998888655        244566676654     2334467889999876

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=93.69  E-value=0.23  Score=51.35  Aligned_cols=52  Identities=13%  Similarity=0.196  Sum_probs=39.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      -++.|+.+||+.|++....|.++      ++.+..+|++..++    +.+..|..++|++++
T Consensus       678 v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~  735 (780)
T 3apo_A          678 WVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQ----TCQKAGIKAYPSVKL  735 (780)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH----HHHhcCCCcCCEEEE
Confidence            46668899999999988766543      46778888886654    555678899999865

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=93.43  E-value=0.14  Score=48.55  Aligned_cols=56  Identities=11%  Similarity=0.313  Sum_probs=38.7

Q ss_pred             EEEEEcCCChhHHHHHH------HH-------HHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEe
Q 039225          165 ISFFSRSNCRDCTAVRR------FF-------KQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLF  224 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~------iL-------~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~I  224 (327)
                      ++.|+.+||++|...++      .+       +..++.+..+|++.+++    |.+.+|...+|+|+  -+|+.+
T Consensus        34 lV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~----l~~~~~V~~~PTl~~f~~G~~~  104 (367)
T 3us3_A           34 ALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA----VAKKLGLTEEDSIYVFKEDEVI  104 (367)
T ss_dssp             EEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHH----HHHHHTCCSTTEEEEEETTEEE
T ss_pred             EEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHH----HHHHcCCCcCceEEEEECCcEE
Confidence            56689999999854441      12       22257788888886654    66677899999874  588644

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=92.19  E-value=0.017  Score=47.03  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH---------cCCceEEEEcCCChh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ---------RGLKFVEINVDVFPP  200 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e---------lgV~y~eiDVd~d~e  200 (327)
                      -|+.|+.+||+.|.+....|.+         .++.+..++++.+++
T Consensus        36 vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~   81 (159)
T 2ls5_A           36 VMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLE   81 (159)
Confidence            3556788999999987666655         234555566655443

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=92.99  E-value=0.48  Score=38.82  Aligned_cols=62  Identities=16%  Similarity=0.332  Sum_probs=45.3

Q ss_pred             CCcEEEEEcCCC-hh-------------HHHHHHHHHHcCCceEEEEcCCChh-------HHHHHHHHhCCCCccEEEeC
Q 039225          162 KGRISFFSRSNC-RD-------------CTAVRRFFKQRGLKFVEINVDVFPP-------REKELIRRTGSSQVPQVFLN  220 (327)
Q Consensus       162 ~~kVvLYsk~~C-p~-------------C~~ak~iL~elgV~y~eiDVd~d~e-------~~~eL~~ltG~~tVPqIFIn  220 (327)
                      |.+|.||--.-| +.             -.....+|++.|+.++.+|+.++|.       +.+ +.+..|...+|.++||
T Consensus         1 M~~i~ifepamCCstGvCG~~vd~~L~~~~~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~-~L~~~G~~~LP~~~VD   79 (110)
T 3kgk_A            1 MKTLMVFDPAMAASTGVCGTDVDQALVDFSTDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKA-FIEASGAEGLPLLLLD   79 (110)
T ss_dssp             CCCEEEEECC-------------CHHHHHHHHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHH-HHHHHCGGGCCEEEET
T ss_pred             CCceEEecchhccccCCcCCCCCHHHHHHHHHHHHHHHCCCeEEEEccccChHHHhcCHHHHH-HHHHcCcccCCEEEEC
Confidence            346888876544 21             2356789999999999999999874       333 4444799999999999


Q ss_pred             CEEe
Q 039225          221 DKLF  224 (327)
Q Consensus       221 Ge~I  224 (327)
                      |+.+
T Consensus        80 Gevv   83 (110)
T 3kgk_A           80 GETV   83 (110)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            9965

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=92.85  E-value=0.12  Score=49.62  Aligned_cols=60  Identities=12%  Similarity=0.184  Sum_probs=37.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCC-----Chh-HH-----------------HHHHHHhCCCCc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDV-----FPP-RE-----------------KELIRRTGSSQV  214 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~-----d~e-~~-----------------~eL~~ltG~~tV  214 (327)
                      |+.|+.+||+.|.+....|.++       ++.+.-++++.     +++ .+                 ..+.+.++...+
T Consensus        86 Ll~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~ygV~~~  165 (352)
T 2hyx_A           86 LIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYW  165 (352)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTTCCEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcCCCcc
Confidence            5557889999999876666433       56666666542     111 11                 134455677889


Q ss_pred             cEEE-e--CCEEe
Q 039225          215 PQVF-L--NDKLF  224 (327)
Q Consensus       215 PqIF-I--nGe~I  224 (327)
                      |.+| |  +|+.+
T Consensus       166 Pt~~lID~~G~Iv  178 (352)
T 2hyx_A          166 PAEYLIDATGTVR  178 (352)
T ss_dssp             SEEEEECTTSBEE
T ss_pred             CEEEEEeCCCeEE
Confidence            9965 5  46543

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=92.70  E-value=0.46  Score=38.68  Aligned_cols=63  Identities=16%  Similarity=0.361  Sum_probs=48.3

Q ss_pred             cCCcEEEEEcCCChh--------------HHHHHHHHHHcCCceEEEEcCCChh-------HHHHHHHHhCCCCccEEEe
Q 039225          161 IKGRISFFSRSNCRD--------------CTAVRRFFKQRGLKFVEINVDVFPP-------REKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~--------------C~~ak~iL~elgV~y~eiDVd~d~e-------~~~eL~~ltG~~tVPqIFI  219 (327)
                      .|.+|.||--.-|..              -.....+|++.|+.++.+|+.++|.       +.+ +.+..|...+|.++|
T Consensus         3 ~M~~i~ifepamCCstGvCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~-~L~~~G~~~LP~~~V   81 (106)
T 3ktb_A            3 AMKKIEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVND-FLQKHGADALPITLV   81 (106)
T ss_dssp             CCCCEEEEECSCSSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHH-HHHTTCGGGCSEEEE
T ss_pred             CCceEEEechhhccCCCCcCCCCCHHHHHHHHHHHHHHHCCCEEEEEccccChHHHhcCHHHHH-HHHHcCcccCCEEEE
Confidence            467799998754322              3466789999999999999999874       333 334478999999999


Q ss_pred             CCEEe
Q 039225          220 NDKLF  224 (327)
Q Consensus       220 nGe~I  224 (327)
                      ||+.+
T Consensus        82 DGevv   86 (106)
T 3ktb_A           82 DGEIA   86 (106)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            99966

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=92.65  E-value=0.42  Score=38.67  Aligned_cols=32  Identities=13%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      |+.|+.+||+.|......|++       .++.+.-++++
T Consensus        35 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d   73 (169)
T 2v1m_A           35 LIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN   73 (169)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             EEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            555778999999866555543       35677777765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=92.56  E-value=0.18  Score=50.89  Aligned_cols=53  Identities=17%  Similarity=0.191  Sum_probs=39.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      ++.|+.+||+.|++....|.++         ++.+..+|++.+.  ..++.+.+|...+|++++
T Consensus        34 lV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~--~~~l~~~~~V~~~PTl~~   95 (519)
T 3t58_A           34 AVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET--NSAVCREFNIAGFPTVRF   95 (519)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG--GHHHHHHTTCCSBSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc--cHHHHHHcCCcccCEEEE
Confidence            5668999999999998777643         3567777776432  245777789999999854

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=92.53  E-value=0.29  Score=41.40  Aligned_cols=33  Identities=9%  Similarity=0.157  Sum_probs=23.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      -|+.|+.+||+.|......|++       .++.+.-++++
T Consensus        51 vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   90 (190)
T 2vup_A           51 LLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN   90 (190)
T ss_dssp             EEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             EEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcC
Confidence            3556788999999766555543       36778888876

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=92.32  E-value=0.76  Score=37.16  Aligned_cols=32  Identities=16%  Similarity=0.241  Sum_probs=22.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      |+.|+.+||+.|......|++       .++.+.-++++
T Consensus        36 ll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d   74 (170)
T 2p5q_A           36 LIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN   74 (170)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             EEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence            555778999999876555543       35667777765

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=91.81  E-value=0.57  Score=37.17  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=24.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCCh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFP  199 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~  199 (327)
                      |+.|+.+||+.|.+....|.++       ++.+.-++++.+.
T Consensus        36 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~   77 (143)
T 4fo5_A           36 LLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKE   77 (143)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCH
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCH
Confidence            4558889999999987776553       3455566666544

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=91.77  E-value=0.55  Score=37.77  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=21.4

Q ss_pred             EEEEEcCCChh-HHHHHHHHHHc-----------CCceEEEEcCC
Q 039225          165 ISFFSRSNCRD-CTAVRRFFKQR-----------GLKFVEINVDV  197 (327)
Q Consensus       165 VvLYsk~~Cp~-C~~ak~iL~el-----------gV~y~eiDVd~  197 (327)
                      |+.|+.+||+. |......|+++           ++.+.-+.++.
T Consensus        27 ll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~   71 (164)
T 2ggt_A           27 LIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP   71 (164)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT
T ss_pred             EEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC
Confidence            45577899997 98765544322           55666666654

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=91.64  E-value=0.31  Score=40.25  Aligned_cols=31  Identities=10%  Similarity=0.198  Sum_probs=20.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      |+.|+.+||+.|. ....|.+       .++.+.-++++
T Consensus        36 ll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d   73 (171)
T 3cmi_A           36 LIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN   73 (171)
T ss_dssp             EEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             EEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence            5557889999999 5544433       25666667664

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=91.62  E-value=0.21  Score=46.59  Aligned_cols=53  Identities=11%  Similarity=0.293  Sum_probs=36.7

Q ss_pred             EEEEEcCCChhHHHH-----------HHH---HHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          165 ISFFSRSNCRDCTAV-----------RRF---FKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       165 VvLYsk~~Cp~C~~a-----------k~i---L~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      ++.|+.+||+ |++.           .++   |+..++.+..+|++.+.+    +.+..|...+|++++  +|+
T Consensus        32 lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~  100 (350)
T 1sji_A           32 CLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAK----LAKKLGFDEEGSLYVLKGDR  100 (350)
T ss_dssp             EEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHH----HHHHHTCCSTTEEEEEETTE
T ss_pred             EEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHH----HHHhcCCCccceEEEEECCc
Confidence            5669999999 8533           122   223357788888887654    556678899999854  776

>4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A*

Probab=91.58  E-value=0.12  Score=44.37  Aligned_cols=69  Identities=20%  Similarity=0.301  Sum_probs=46.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--Ch-hHHHHHHHHhCCCCccEEEeCC-EEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FP-PREKELIRRTGSSQVPQVFLND-KLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~-e~~~eL~~ltG~~tVPqIFInG-e~IGG~deL~~L  233 (327)
                      -+.||+.++- .+.+++-+|.++|++|+.+.|+.  .+ ....++.+++-..+||++..+| ..|.....|...
T Consensus         3 mmkLY~~p~s-~s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP~g~vP~L~~d~~~~l~eS~aI~~Y   75 (211)
T 4gci_A            3 MMKLFYKPGA-CSLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQY   75 (211)
T ss_dssp             CEEEEECTTS-TTHHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEECHHHHHHH
T ss_pred             eEEEEeCCCC-cHHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCCCCCCCccccCCCCEEecCHHHHHH
Confidence            3678987642 35789999999999998776653  22 2223455666678999999877 556655555443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=91.55  E-value=0.46  Score=46.46  Aligned_cols=54  Identities=9%  Similarity=0.206  Sum_probs=36.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      .-++.|+.+||++|++....|.++         ++.+..+|.+....     .. .+...+|++++  +|+
T Consensus       378 ~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~-----~~-~~v~~~Pt~~~~~~G~  442 (504)
T 2b5e_A          378 DVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDV-----RG-VVIEGYPTIVLYPGGK  442 (504)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCC-----SS-CCCSSSSEEEEECCTT
T ss_pred             CEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcccc-----cc-CCceecCeEEEEeCCc
Confidence            346678899999999988776543         35566677664432     12 67788999865  663

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=91.31  E-value=0.32  Score=43.58  Aligned_cols=57  Identities=19%  Similarity=0.215  Sum_probs=41.1

Q ss_pred             EEEEEcCC--ChhHHHHHHHHHHcC-----------CceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CC--EEee
Q 039225          165 ISFFSRSN--CRDCTAVRRFFKQRG-----------LKFVEINVDVFPPREKELIRRTGSSQVPQVFL-ND--KLFG  225 (327)
Q Consensus       165 VvLYsk~~--Cp~C~~ak~iL~elg-----------V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nG--e~IG  225 (327)
                      ++.|+.+|  |++|+.++.+|+++.           +.+..+|.+.+++    +.+.+|...+|++.+ +|  ++.|
T Consensus        29 ~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~----~~~~~gv~~~Pt~~i~~g~~~~~G  101 (243)
T 2hls_A           29 EVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSD----KFSEFKVERVPTVAFLGGEVRWTG  101 (243)
T ss_dssp             EEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHH----HHHHTTCCSSSEEEETTTTEEEES
T ss_pred             EEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHH----HHHhcCCCcCCEEEEECCceeEcC
Confidence            34577788  999999999987642           6677788775543    555678889999866 44  4444

>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5

Probab=90.90  E-value=0.19  Score=44.82  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=49.2

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHH-----HHhCCCCccEE--EeCCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELI-----RRTGSSQVPQV--FLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~-----~ltG~~tVPqI--FInGe~IGG~deL~~L  233 (327)
                      +..+++|+.+.++.|.+++-+|.+.|++|+.++++.   ....++     +++-..+||++  ..||..|....-|...
T Consensus        17 ~~~~~Ly~~~~~~~~~~vrl~L~e~gi~ye~~~~~~---~~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES~AI~~Y   92 (248)
T 2fno_A           17 MNTFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDA---IEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIAIY   92 (248)
T ss_dssp             CBSEEEECCSSSSTTHHHHHHHHHTTCCEECCCHHH---HHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHHHH
T ss_pred             CCceEEEecCCCCchHHHHHHHHHcCCCcEeeccch---HHHHHhccccccCCCCCCCCEEEeccCCEEEecHHHHHHH
Confidence            456889999977889999999999999999876652   111121     13446789999  5577777766655543

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=90.47  E-value=1.3  Score=35.84  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             EEEEEcCCChh-HHHHHHHHH----Hc-------CCceEEEEcC
Q 039225          165 ISFFSRSNCRD-CTAVRRFFK----QR-------GLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~-C~~ak~iL~----el-------gV~y~eiDVd  196 (327)
                      |+.|+.+||+. |......|+    ++       ++.+.-++++
T Consensus        30 ll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d   73 (171)
T 2rli_A           30 LMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVD   73 (171)
T ss_dssp             EEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESC
T ss_pred             EEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEEC
Confidence            45577899998 987655443    22       5566667766

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=90.46  E-value=0.42  Score=41.29  Aligned_cols=45  Identities=11%  Similarity=0.188  Sum_probs=29.0

Q ss_pred             CCChhHHHHHHHHHHc--------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          171 SNCRDCTAVRRFFKQR--------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~el--------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      +||+.|+.....+.+.        .+.+..+|.+.+++    +.+.+|...+|++.+
T Consensus        35 ~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Ptl~~   87 (229)
T 2ywm_A           35 ESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE----ETEKYGVDRVPTIVI   87 (229)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHH----HHHHTTCCBSSEEEE
T ss_pred             cccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHH----HHHHcCCCcCcEEEE
Confidence            4455555555555544        25677777776544    666788899999865

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=89.68  E-value=0.53  Score=38.21  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=29.5

Q ss_pred             EEE-EEc-CCChhHHHHHHHHH-------HcCCceEEEEcCCChhHHHHHHHHhCCCCccEE
Q 039225          165 ISF-FSR-SNCRDCTAVRRFFK-------QRGLKFVEINVDVFPPREKELIRRTGSSQVPQV  217 (327)
Q Consensus       165 VvL-Ysk-~~Cp~C~~ak~iL~-------elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI  217 (327)
                      ++| |+. +||+.|......|.       +.|+.+.-+.++.....++.++ ..+ ..+|.+
T Consensus        38 ~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~-~~~-~~~~~~   97 (163)
T 3gkn_A           38 LVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCA-KQG-FAFPLV   97 (163)
T ss_dssp             EEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH-HHC-CSSCEE
T ss_pred             EEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH-HhC-CCceEE
Confidence            444 444 79999987654443       3467777777773334444333 334 345654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=89.21  E-value=0.77  Score=47.43  Aligned_cols=56  Identities=11%  Similarity=0.076  Sum_probs=41.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      .-++.|+.+||+.|++....|.+.      ++.+..+|++.++.    +.+..|...+|++++  +|+
T Consensus       457 ~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~  520 (780)
T 3apo_A          457 PWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEG----LCNMYNIQAYPTTVVFNQSS  520 (780)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTE
T ss_pred             eEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHH----HHHHcCCCcCCeEEEEcCCc
Confidence            345668889999999988777643      46778888876554    555678888999864  454

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=88.85  E-value=0.42  Score=38.36  Aligned_cols=52  Identities=10%  Similarity=0.174  Sum_probs=36.2

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCC--ccEEEe
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQ--VPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~t--VPqIFI  219 (327)
                      .|+++....|+.|+.....|++.      .+.|..+|++..++    +...+|..+  +|++.+
T Consensus        25 pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~----~a~~~gi~~~~iPtl~i   84 (133)
T 2djk_A           25 PLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAFGA----HAGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             CEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGG----GTTTTTCCSSSSSEEEE
T ss_pred             CEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHH----HHHHcCCCcccCCEEEE
Confidence            45554444499999888888654      36788889886664    445567777  998743

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=88.64  E-value=2.4  Score=35.28  Aligned_cols=32  Identities=9%  Similarity=0.082  Sum_probs=20.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd  196 (327)
                      |+.|+.+||+.|......|.++       |+.+.-+.++
T Consensus        42 lv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   80 (180)
T 3kij_A           42 LVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCN   80 (180)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECC
T ss_pred             EEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            4447789999999866555433       3445555544

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=88.44  E-value=1.2  Score=35.82  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=23.0

Q ss_pred             EEEEE-cCCChhHHHHHHHHHHc-------CCceEEEEcCC
Q 039225          165 ISFFS-RSNCRDCTAVRRFFKQR-------GLKFVEINVDV  197 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL~el-------gV~y~eiDVd~  197 (327)
                      |+.|+ .+||+.|......|.++       ++.+.-++++.
T Consensus        40 vl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~   80 (160)
T 1xvw_A           40 LLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGP   80 (160)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC
T ss_pred             EEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCC
Confidence            44465 89999999887777654       45566666653

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=87.05  E-value=0.64  Score=39.41  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=22.7

Q ss_pred             EEEEE-cCCChhHHHHHHHHHHc-------CCceEEEEcCC
Q 039225          165 ISFFS-RSNCRDCTAVRRFFKQR-------GLKFVEINVDV  197 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL~el-------gV~y~eiDVd~  197 (327)
                      |+.|+ .+||+.|......|.++       ++.+.-++++.
T Consensus        49 vl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~   89 (195)
T 2bmx_A           49 VVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDS   89 (195)
T ss_dssp             EEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            44466 78999999876665443       56677777764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=86.79  E-value=0.27  Score=41.59  Aligned_cols=33  Identities=9%  Similarity=0.146  Sum_probs=23.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      -|+.|+.+||+.|......|.+       .|+.+.-+.++
T Consensus        49 vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   88 (187)
T 3dwv_A           49 LLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSN   88 (187)
T ss_dssp             EEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBC
T ss_pred             EEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECc
Confidence            3555888999999875554433       35777777765

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=86.52  E-value=0.59  Score=39.66  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=21.9

Q ss_pred             EEEEE-cCCChhHHHHHHHHHH-------cCCceEEEEcCC
Q 039225          165 ISFFS-RSNCRDCTAVRRFFKQ-------RGLKFVEINVDV  197 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~  197 (327)
                      |+.|+ .+||+.|......|.+       .++.+.-++++.
T Consensus        37 vl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~   77 (198)
T 1zof_A           37 ILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDS   77 (198)
T ss_dssp             EEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             EEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            44466 6899999866555543       367777777764

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=86.39  E-value=0.68  Score=38.56  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEc
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINV  195 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDV  195 (327)
                      +..+++|.||.|+-|+.+..+|..+.-+|+...|
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV   35 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVEELKSEYDILHV   35 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHTTTTTEEEEEE
T ss_pred             CceEEEeCCCccHHHHHHHHHHHHhhccccEEEE
Confidence            4568999999999999999999888777765433

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=85.14  E-value=1.8  Score=36.13  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=22.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      |+.|+.+||+.|.+....|++       .++.+.-++++
T Consensus        53 lv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d   91 (181)
T 2p31_A           53 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCN   91 (181)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             EEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECc
Confidence            555788999999976555543       24666667765

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=84.55  E-value=1.6  Score=37.26  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=22.5

Q ss_pred             EEEEE-cCCChhHHHHHHHHHH-------cCCceEEEEcCC
Q 039225          165 ISFFS-RSNCRDCTAVRRFFKQ-------RGLKFVEINVDV  197 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~  197 (327)
                      |+.|+ .+||+.|......|.+       .++.+.-++++.
T Consensus        40 vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~   80 (202)
T 1uul_A           40 VLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDS   80 (202)
T ss_dssp             EEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             EEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            44466 6899999977665543       356677777764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=84.08  E-value=3.4  Score=33.85  Aligned_cols=53  Identities=15%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             EEE-EE-cCCChhHH-HHH-------HHHHHcCCc-eEEEEcCCChhHHHHHHHHhCCC-CccEEE
Q 039225          165 ISF-FS-RSNCRDCT-AVR-------RFFKQRGLK-FVEINVDVFPPREKELIRRTGSS-QVPQVF  218 (327)
Q Consensus       165 VvL-Ys-k~~Cp~C~-~ak-------~iL~elgV~-y~eiDVd~d~e~~~eL~~ltG~~-tVPqIF  218 (327)
                      |+| |+ .+||+.|. .-.       +-+++.|+. +.-+.++. ++..+++.+..+.. ++|.+.
T Consensus        38 vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~-~~~~~~~~~~~~~~~~~~~l~  102 (162)
T 1tp9_A           38 VILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND-PFVMKAWAKSYPENKHVKFLA  102 (162)
T ss_dssp             EEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC-HHHHHHHHHTCTTCSSEEEEE
T ss_pred             EEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHHhcCCCCCeEEEE
Confidence            444 44 57999999 222       223445888 88888764 33333444444433 466543

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=84.05  E-value=1.9  Score=35.91  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=22.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      |+.|+.+||+.|......|++       .++.+.-++++
T Consensus        51 ll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           51 IVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            555788999999876555543       35667777765

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=83.34  E-value=2.3  Score=35.52  Aligned_cols=32  Identities=13%  Similarity=0.071  Sum_probs=21.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd  196 (327)
                      |+.|+.+|||.|.+....|++       .++.+.-++++
T Consensus        53 lv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d   91 (185)
T 2gs3_A           53 IVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCN   91 (185)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             EEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            555788999999866555543       35666667665

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=82.76  E-value=4  Score=34.10  Aligned_cols=53  Identities=9%  Similarity=0.020  Sum_probs=31.1

Q ss_pred             EEEE-E-cCCChhHHH-HHHH-------HHHcCC-ceEEEEcCCChhHHHHHHHHhCCC-CccEEE
Q 039225          165 ISFF-S-RSNCRDCTA-VRRF-------FKQRGL-KFVEINVDVFPPREKELIRRTGSS-QVPQVF  218 (327)
Q Consensus       165 VvLY-s-k~~Cp~C~~-ak~i-------L~elgV-~y~eiDVd~d~e~~~eL~~ltG~~-tVPqIF  218 (327)
                      |+|+ + .+|||.|.. -...       +++.|+ .+.-+.++. ++..+++.+..+.. .+|.+.
T Consensus        34 vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~-~~~~~~~~~~~~~~~~fp~l~   98 (167)
T 2wfc_A           34 GVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVND-SFVMDAWGKAHGADDKVQMLA   98 (167)
T ss_dssp             EEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSC-HHHHHHHHHHTTCTTTSEEEE
T ss_pred             EEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC-HHHHHHHHHhcCCCcceEEEE
Confidence            5554 3 689999998 3222       344578 777777764 33333444445543 377554

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=82.60  E-value=4.4  Score=35.37  Aligned_cols=41  Identities=12%  Similarity=0.050  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhccCccccccccceeccCCcchhHHHHHHHhcc
Q 039225          275 EMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHF  316 (327)
Q Consensus       275 Ela~lV~~l~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~  316 (327)
                      ..+.+++.|+.. .|+...-.+-.++.|-....+..||.++.
T Consensus       154 ~~~~il~~l~~~-~i~~~~i~ly~~~~Cp~C~~a~~~L~~~~  194 (241)
T 1nm3_A          154 DADTMLKYLAPQ-HQVQESISIFTKPGCPFCAKAKQLLHDKG  194 (241)
T ss_dssp             SHHHHHHHHCTT-SCCCCCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHhhhh-ccccceEEEEECCCChHHHHHHHHHHHcC
Confidence            455566777653 35555444455678988999999998754

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=82.35  E-value=0.7  Score=38.72  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=22.3

Q ss_pred             EEEEE-cCCChhHHHHHHHHHH-------cCCceEEEEcCC
Q 039225          165 ISFFS-RSNCRDCTAVRRFFKQ-------RGLKFVEINVDV  197 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~  197 (327)
                      |+.|+ .+||+.|......|.+       .++.+.-++++.
T Consensus        35 vl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~   75 (187)
T 1we0_A           35 IVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDT   75 (187)
T ss_dssp             EEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            44466 7999999876555433       367777777764

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=81.78  E-value=1.6  Score=35.21  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=22.6

Q ss_pred             EEEEEcCCChh-HHHHHHHHHHc----------CCceEEEEcCC
Q 039225          165 ISFFSRSNCRD-CTAVRRFFKQR----------GLKFVEINVDV  197 (327)
Q Consensus       165 VvLYsk~~Cp~-C~~ak~iL~el----------gV~y~eiDVd~  197 (327)
                      |+.|+.+||+. |......|+++          ++.+.-++++.
T Consensus        39 ll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~   82 (172)
T 2k6v_A           39 LLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDP   82 (172)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCT
T ss_pred             EEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECC
Confidence            55577899995 99877666543          35566666653

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=81.64  E-value=3.4  Score=34.55  Aligned_cols=53  Identities=8%  Similarity=0.125  Sum_probs=32.3

Q ss_pred             EEE--EEcCCChhHHHH-HHH-------HHHcCCc-eEEEEcCCChhHHHHHHHHhCC-CCccEEE
Q 039225          165 ISF--FSRSNCRDCTAV-RRF-------FKQRGLK-FVEINVDVFPPREKELIRRTGS-SQVPQVF  218 (327)
Q Consensus       165 VvL--Ysk~~Cp~C~~a-k~i-------L~elgV~-y~eiDVd~d~e~~~eL~~ltG~-~tVPqIF  218 (327)
                      |+|  |..+|||.|..- ...       +++.|+. +.-++++..... +.+.+..|. ..+|.+.
T Consensus        46 vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~-~~~~~~~~~~~~fp~l~  110 (171)
T 2pwj_A           46 VVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTV-NAWAEKIQAKDAIEFYG  110 (171)
T ss_dssp             EEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHH-HHHHHHTTCTTTSEEEE
T ss_pred             EEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHH-HHHHHHhCCCCceEEEE
Confidence            544  456899999974 333       3445888 888887743333 344444565 3678543

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=81.60  E-value=1.7  Score=37.15  Aligned_cols=36  Identities=11%  Similarity=0.164  Sum_probs=27.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCCh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFP  199 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~  199 (327)
                      .|+.|+..+||+|.+....|.++      ++.|..+.+..+.
T Consensus        27 ~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~~~~   68 (193)
T 3hz8_A           27 EVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVWQK   68 (193)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECCCSG
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCCCCc
Confidence            58889999999999998777654      2456777776544

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=81.06  E-value=2.5  Score=36.80  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=22.5

Q ss_pred             EEEEE-cCCChhHHHHHHHHHH-------cCCceEEEEcCC
Q 039225          165 ISFFS-RSNCRDCTAVRRFFKQ-------RGLKFVEINVDV  197 (327)
Q Consensus       165 VvLYs-k~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~  197 (327)
                      |+.|+ .+||+.|......|.+       .++.+.-+.++.
T Consensus        56 vl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~   96 (213)
T 2i81_A           56 LLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDS   96 (213)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             EEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            44466 6899999987666544       366666677664

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=81.05  E-value=3.6  Score=35.26  Aligned_cols=49  Identities=10%  Similarity=0.081  Sum_probs=30.3

Q ss_pred             cCCChhHHH-HHHHH-------HHcCCc-eEEEEcCCChhHHHHHHHHhCCC-CccEEEe
Q 039225          170 RSNCRDCTA-VRRFF-------KQRGLK-FVEINVDVFPPREKELIRRTGSS-QVPQVFL  219 (327)
Q Consensus       170 k~~Cp~C~~-ak~iL-------~elgV~-y~eiDVd~d~e~~~eL~~ltG~~-tVPqIFI  219 (327)
                      .+|||.|.. =...|       ++.|+. +.-+.++. ++..+++.+..+.. .+|.+.-
T Consensus        66 a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~-~~~~~~f~~~~~~~~~fp~l~D  124 (184)
T 3uma_A           66 GAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVND-LHVMGAWATHSGGMGKIHFLSD  124 (184)
T ss_dssp             CTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC-HHHHHHHHHHHTCTTTSEEEEC
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCC-HHHHHHHHHHhCCCCceEEEEc
Confidence            689999998 22222       345787 77788764 44444555555654 4776653

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=80.42  E-value=3  Score=36.25  Aligned_cols=36  Identities=17%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCChhHHHHHHHH---HHc------CCceEEEEcCCC
Q 039225          163 GRISFFSRSNCRDCTAVRRFF---KQR------GLKFVEINVDVF  198 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL---~el------gV~y~eiDVd~d  198 (327)
                      ..|+-|+..|||+|++....|   .++      ++.|..++++..
T Consensus       115 ~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          115 PQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            457789999999999998776   543      467889999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-12
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	5e-12
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	3e-09
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	5e-09
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	1e-08
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	2e-08
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	5e-08
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-07
d1o7fa1	142	a.4.5.31 (A:180-321) Regulatory domain of epac2, d	1e-06
d1fsha_	94	a.4.5.31 (A:) Segment polarity protein Dishevelled	2e-04
d1abaa_	87	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	0.002
d2csoa1	115	a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens	0.003

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 60.4 bits (146), Expect = 1e-12
 Identities = 20/77 (25%), Positives = 40/77 (51%)

Query: 165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF 224
           +  +++  C  C   +     +G+ F E+ +D    + +E+I+R+G + VPQ+F++ +  
Sbjct: 3   VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHI 62

Query: 225 GGLVALNSLRNSGTFDE 241
           GG   L +L   G  D 
Sbjct: 63  GGYDDLYALDARGGLDP 79

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 58.4 bits (141), Expect = 5e-12
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 160 KIKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL 219
           +++  IS F++  C  C   ++    +GL F EI +         +   +G + VPQVF+
Sbjct: 2   QVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIV-SVRAVSGRTTVPQVFI 60

Query: 220 NDKLFGGLVAL 230
             K  GG   L
Sbjct: 61  GGKHIGGSDDL 71

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
            I+ +++  C  CTA ++   + GL +  +++ +      + +   G  Q P V ++ + 
Sbjct: 2   SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEAR-DYVMALGYVQAPVVEVDGEH 60

Query: 224 FGG 226
           + G
Sbjct: 61  WSG 63

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.8 bits (121), Expect = 5e-09
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 158 EEKIK-GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF------PPREKELIRRTG 210
             KI+ G++  F +  C  C   +    Q   K   +              +  L + TG
Sbjct: 6   NSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG 65

Query: 211 SSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFREM 246
           +  VP+VF+  +  GG   L S+   G    R +++
Sbjct: 66  ARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 1e-08
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKL 223
           RI+ ++R++C  C A +R  + RG  F  INVD  P    E +R  G  Q+P V   D  
Sbjct: 2   RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEA-AEALRAQGFRQLPVVIAGDLS 60

Query: 224 FGG 226
           + G
Sbjct: 61  WSG 63

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (117), Expect = 2e-08
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 10/102 (9%)

Query: 154 GEEGEEKIKGRIS-----FFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK 203
           G  G   +K   +      F +     + C     +       G+++   ++       +
Sbjct: 1   GSSGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQ 60

Query: 204 ELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERFRE 245
            L   +     PQ+++   L GGL  +  L+++G      + 
Sbjct: 61  GLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 2/79 (2%)

Query: 169 SRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR--TGSSQVPQVFLNDKLFGG 226
           SR      + V R    + +++  +++        E+        +  PQ+   +   G 
Sbjct: 14  SREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGD 73

Query: 227 LVALNSLRNSGTFDERFRE 245
                      T  E  + 
Sbjct: 74  YELFVEAVEQDTLQEFLKL 92

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 168 FSRSNCRDCTAVRRFFKQRGLK-----FVEINVDVFPPREKELIRRT--GSSQVPQVFLN 220
           F RS C  C   +   ++   +     +  +++      +++L ++       VPQ+F++
Sbjct: 6   FGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVD 65

Query: 221 DKLFGGLVALNSL 233
            +  GG     + 
Sbjct: 66  QQHIGGYTDFAAW 78

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 274 DEMLLSVKLLRQRL------PIQDRLIKLKIVKNCFSGSEMVDVLTHHFKC 318
           +++L + K+LR  +       I+DR   LK  + C  G+E+VD +     C
Sbjct: 4   EKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSC 54

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 272 SMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVR 324
            M  ++  ++L    L I+DR+     + N   G+++VD L  H +   +R + R
Sbjct: 9   DMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREAR 63

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} Length = 87

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 169 SRSNCRDCTAVRRFFKQRGLKFVEIN-----VDVFPPREKELIRR-----TGSSQVPQVF 218
           +   C  C   +R    +   F  IN           +  EL+ +          +PQVF
Sbjct: 10  NIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVF 69

Query: 219 LND-KLFGGLVALNSL 233
             D    GG   L   
Sbjct: 70  APDGSHIGGFDQLREY 85

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 272 SMDEMLLSVKLLRQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFKC-DRMK 322
            +  + LS+K   + +   +     KI  +CF+G+ ++D L  +    +R +
Sbjct: 10  DLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQE 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.91
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.9
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.88
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.82
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.77
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.77
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.76
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.67
d1fsha_	94	Segment polarity protein Dishevelled-1 {Mouse (Mus	99.29
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.19
d1v3fa_	120	Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}	99.15
d2csoa1	115	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1o7fa1	142	Regulatory domain of epac2, domain 2 {Mouse (Mus m	99.0
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.89
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.86
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.74
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.42
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	98.37
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	98.37
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	98.36
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	98.34
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	98.33
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	98.32
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	98.26
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	98.22
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	98.18
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.14
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	98.12
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	98.02
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	98.0
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	97.99
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	97.97
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.96
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	97.93
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.91
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	97.91
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.8
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.78
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.77
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.75
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.64
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	97.61
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	97.58
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.49
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.49
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.48
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.47
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.46
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	97.44
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	97.37
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.35
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	97.33
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.31
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.99
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	96.95
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	96.94
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	96.86
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	96.69
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.39
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	96.39
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	96.34
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	96.32
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	96.23
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	96.22
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	96.12
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	95.97
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	95.96
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	95.71
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	95.66
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	95.59
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	95.33
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	95.23
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	95.21
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	95.06
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	95.05
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	94.99
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	94.76
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	94.57
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	94.56
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	94.56
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	94.54
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	94.5
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	94.43
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	94.41
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	94.28
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	94.16
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	93.93
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.79
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	93.75
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	93.67
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	93.08
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	92.62
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	91.83
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	91.34
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	90.92
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	90.22
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	89.88
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	89.42
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	89.23
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	87.43
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	86.65
d1oe8a2	81	Class alpha GST {Blood fluke (Schistosoma haematob	81.9
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	81.62

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.91  E-value=5.3e-25  Score=169.19  Aligned_cols=81  Identities=25%  Similarity=0.640  Sum_probs=78.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhhcCchHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRNSGTFDERF  243 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~esGeL~~~L  243 (327)
                      .|+||++++||||.+||++|+++|++|+++||+.+++.++++.+.+|++|||||||||++|||++++.+++++|+|+++|
T Consensus         2 ~I~iys~~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~~~g~L~~lL   81 (82)
T d1fova_           2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLDPLL   81 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTCSHHHH
T ss_pred             cEEEEeCCCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhCCCCCCeEEECCEEEecHHHHHHHHHcCCHHHHh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             H
Q 039225          244 R  244 (327)
Q Consensus       244 k  244 (327)
                      +
T Consensus        82 k   82 (82)
T d1fova_          82 K   82 (82)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.6e-24  Score=174.43  Aligned_cols=88  Identities=16%  Similarity=0.331  Sum_probs=84.2

Q ss_pred             cCCcEEEEEc-----CCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhhh
Q 039225          161 IKGRISFFSR-----SNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       161 ~~~kVvLYsk-----~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      .+++|+||+|     |+||||.+||++|++++++|+++||+.+++.++++.+++|++|||||||||++|||+++|++|++
T Consensus        13 ~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~~IGG~ddl~~l~~   92 (109)
T d1wika_          13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKD   92 (109)
T ss_dssp             TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEECHHHHHHHHH
T ss_pred             hcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence            4689999999     77999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHhhc
Q 039225          236 SGTFDERFREMLG  248 (327)
Q Consensus       236 sGeL~~~Lk~~~~  248 (327)
                      +|+|.++|+++++
T Consensus        93 ~G~L~~lL~~~~~  105 (109)
T d1wika_          93 NGELLPILKGESG  105 (109)
T ss_dssp             HTCSHHHHHTCCS
T ss_pred             CCCHHHHHHhcCC
Confidence            9999999998764

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.88  E-value=3.2e-23  Score=166.88  Aligned_cols=88  Identities=25%  Similarity=0.482  Sum_probs=78.7

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCc-----eEEEEcCCCh-hHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLK-----FVEINVDVFP-PREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~-----y~eiDVd~d~-e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+++|+||++++||||.+||++|+++|++     |.++|+..+. ..++.+.+.+|++|||||||||++|||+++|.+++
T Consensus        10 ~~~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g~~IGG~~el~~l~   89 (105)
T d1ktea_          10 QPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMH   89 (105)
T ss_dssp             CTTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ccCCEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECCEEEecHHHHHHHH
Confidence            35789999999999999999999999976     5666666664 45667888899999999999999999999999999


Q ss_pred             hcCchHHHHHHhhc
Q 039225          235 NSGTFDERFREMLG  248 (327)
Q Consensus       235 esGeL~~~Lk~~~~  248 (327)
                      ++|+|.++|+++|+
T Consensus        90 ~~G~L~~~L~~~Ga  103 (105)
T d1ktea_          90 KRGELLTRLQQVGA  103 (105)
T ss_dssp             HHTHHHHHHHHHTC
T ss_pred             HCCCHHHHHHHcCC
Confidence            99999999999885

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.82  E-value=1.6e-20  Score=141.48  Aligned_cols=71  Identities=28%  Similarity=0.538  Sum_probs=65.5

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHH
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      ++.+|+||++++||||.+||++|+++|++|+++||+.+... +++.+.+|+.+||+|||||++|||++||.+
T Consensus         3 ~~~~I~iYs~~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~~-~~~~~~~~~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           3 VQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATI-VSVRAVSGRTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCH-HHHHHHTCCSSSCEEEETTEEEESHHHHHH
T ss_pred             CcCcEEEEECCCCHHHHHHHHHHHHcCCCeEEEEccCcHHH-HHHHHHhCCccCCEEEECCEEEEChHHHhh
Confidence            56789999999999999999999999999999999988764 567788999999999999999999999875

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.9e-20  Score=146.36  Aligned_cols=84  Identities=13%  Similarity=0.226  Sum_probs=79.0

Q ss_pred             CCcEEEEEcCCC------hhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC--CCccEEEeCCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNC------RDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS--SQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~C------p~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~--~tVPqIFInGe~IGG~deL~~L  233 (327)
                      |+.|+||++++|      .+|.+++++|+.+||+|+++||+.+++.++++.+++|+  +++|||||||++|||++++.++
T Consensus         1 m~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~del~~~   80 (93)
T d1t1va_           1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEA   80 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHH
T ss_pred             CCCEEEEEccCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHHHHHHH
Confidence            467999999999      59999999999999999999999999999999999875  6999999999999999999999


Q ss_pred             hhcCchHHHHHH
Q 039225          234 RNSGTFDERFRE  245 (327)
Q Consensus       234 ~esGeL~~~Lk~  245 (327)
                      +++|+|+++|+.
T Consensus        81 ~e~g~L~~~lk~   92 (93)
T d1t1va_          81 VEQDTLQEFLKL   92 (93)
T ss_dssp             HHTTCHHHHTTC
T ss_pred             HHCCCHHHHhcc
Confidence            999999999874

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.77  E-value=6.1e-19  Score=132.28  Aligned_cols=70  Identities=19%  Similarity=0.467  Sum_probs=62.9

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechH--HHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLV--ALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~d--eL~~L  233 (327)
                      ++|+||++++||||.+||++|+++|++|+++||+.+++.+++++. +|.++||+|||||++|||++  .|++|
T Consensus         1 M~v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~g~~igGf~~d~l~~L   72 (74)
T d1r7ha_           1 MSITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFRPERIKQL   72 (74)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCBCCCEEEETTEEEESCCHHHHHHH
T ss_pred             CEEEEEeCCCChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHH-hCCCCcCEEEECCEEEeCCCHhHHHHh
Confidence            469999999999999999999999999999999999998887765 58999999999999999984  45444

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=9.1e-20  Score=140.79  Aligned_cols=74  Identities=18%  Similarity=0.453  Sum_probs=65.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCC--CCccEEEeCCEEeechHHHHHhhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGS--SQVPQVFLNDKLFGGLVALNSLRN  235 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~--~tVPqIFInGe~IGG~deL~~L~e  235 (327)
                      ++|+||++++||||.+||++|+++|     ++|+++|++.+++.++++.+.++.  +|||||||||++|||+++|.++.+
T Consensus         1 Mkvviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el~~~~~   80 (85)
T d1egoa_           1 MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVK   80 (85)
T ss_dssp             CEEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHHHHHH
T ss_pred             CEEEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCEEEECHHHHHHHHH
Confidence            5799999999999999999999965     678999998888888888888764  699999999999999999998865


Q ss_pred             c
Q 039225          236 S  236 (327)
Q Consensus       236 s  236 (327)
                      +
T Consensus        81 ~   81 (85)
T d1egoa_          81 E   81 (85)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1e-18  Score=132.21  Aligned_cols=71  Identities=34%  Similarity=0.623  Sum_probs=64.3

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeech--HHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGL--VALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~--deL~~L~  234 (327)
                      ++|+||++++||||.+|+++|+++|++|+++||+.+++.+++++. .|.++||+|+|||++|||+  +.|.+|.
T Consensus         1 Mki~iYs~~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~~~~i~Gf~~d~i~~L~   73 (76)
T d1h75a_           1 MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFRPDMINRLH   73 (76)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCCHHHHGGGS
T ss_pred             CEEEEEeCCCCccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHh-cCCCCCCEEEECCEEEECCCHHHHHHHh
Confidence            469999999999999999999999999999999999998887765 6999999999999999998  5666654

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.67  E-value=7.2e-17  Score=125.42  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=59.4

Q ss_pred             EEEEEcCC----ChhHHHHHHHHHHcCCceEEEEcCCC-----hhHHHHHHHH-----hCCCCccEEEe-CCEEeechHH
Q 039225          165 ISFFSRSN----CRDCTAVRRFFKQRGLKFVEINVDVF-----PPREKELIRR-----TGSSQVPQVFL-NDKLFGGLVA  229 (327)
Q Consensus       165 VvLYsk~~----Cp~C~~ak~iL~elgV~y~eiDVd~d-----~e~~~eL~~l-----tG~~tVPqIFI-nGe~IGG~de  229 (327)
                      +.||++++    ||||.+||++|+++|++|++++++.+     ...++++.+.     +|++||||||| ||++|||++|
T Consensus         2 ~~Iy~~~~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~de   81 (87)
T d1abaa_           2 FKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ   81 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred             EEEEEeCCCCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHHH
Confidence            67998775    99999999999999999999999764     3444555544     46799999999 5999999999


Q ss_pred             HHHhhh
Q 039225          230 LNSLRN  235 (327)
Q Consensus       230 L~~L~e  235 (327)
                      |+++++
T Consensus        82 l~e~~k   87 (87)
T d1abaa_          82 LREYFK   87 (87)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            998753

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=4.9e-13  Score=105.72  Aligned_cols=54  Identities=26%  Similarity=0.369  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          273 MDEMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       273 ~DEla~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      .++|+.||+.|++   |+.|+||++++++|+|||+|+|+||||+++.+  .+|++||.+
T Consensus         7 ~~~l~~iv~~M~~~~~Gl~i~dr~~~~~~y~~~F~G~e~V~WL~~~~~~~~~r~eAv~l   65 (94)
T d1fsha_           7 KSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKY   65 (94)
T ss_dssp             SSCHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCCCeeEeEEeccEEcccceehHHHHHHHHHhccccCCHHHHHHH
Confidence            4579999999975   36799999999999999999999999999855  999999975

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=3.5e-12  Score=100.66  Aligned_cols=78  Identities=15%  Similarity=0.394  Sum_probs=61.3

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe--echHHHHHhhhcCc
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF--GGLVALNSLRNSGT  238 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I--GG~deL~~L~esGe  238 (327)
                      .+..|++|+++||++|++++.+|++++.+|...++..|.+..++|.+.+|.+ ||+|||||+.+  |.++       ..+
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~idg~~~~~g~~d-------~~~   86 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD-IPVFHLNGQFLMMHRVN-------TSK   86 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS-CSEEEESSSEEEESSCC-------HHH
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhccc-CCceeecCceEEeCCCC-------HHH
Confidence            4567999999999999999999999999887777766666667899999976 99999999754  3333       234


Q ss_pred             hHHHHHHh
Q 039225          239 FDERFREM  246 (327)
Q Consensus       239 L~~~Lk~~  246 (327)
                      |+++|+++
T Consensus        87 L~~~L~~l   94 (100)
T d1wjka_          87 LEKQLRKL   94 (100)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHHHH
Confidence            56666654

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=7.3e-12  Score=102.82  Aligned_cols=54  Identities=17%  Similarity=0.155  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          273 MDEMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       273 ~DEla~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      .+.|..||+.|++   ++.+++|++++++|++||+|+|+||||+++.. .+|++|+.|
T Consensus         5 ~~~l~~i~~~m~~~~~Gv~~~~~~~~~~~y~~cF~G~e~VdWL~~~~~~~~R~eA~~l   62 (120)
T d1v3fa_           5 SSGLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTL   62 (120)
T ss_dssp             CSHHHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHH
T ss_pred             chhHHHHHHHHhCCCCCceeEEEEECCEEcCcEEEhHHHHHHHHHhcCCCCHHHHHHH
Confidence            4589999999986   57899999999999999999999999999888 889999976

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.9e-11  Score=98.50  Aligned_cols=52  Identities=15%  Similarity=0.236  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhc---cCccccccccceeccCCcchhHHHHHHHhccc-cChhhhhhc
Q 039225          275 EMLLSVKLLRQ---RLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK-CDRMKVRFV  326 (327)
Q Consensus       275 Ela~lV~~l~~---~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~-~~r~~Av~~  326 (327)
                      .++.||+.|++   ++.+++|++++++|++||+|+|+|+||+++.. .+|++||.+
T Consensus        10 ~l~~l~~~m~d~~~Gi~~~~~~~~~~~y~~cF~G~e~V~WL~~~~~~~~r~eAv~l   65 (115)
T d2csoa1          10 DLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSVRNRQEGLMI   65 (115)
T ss_dssp             CHHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSCSSHHHHHHH
T ss_pred             CHHHHHHHhhCCCCCceeeEeeeCCeeccccccHHHHHHHHHHcCCCCCHHHHHHH
Confidence            57889999975   66799999999999999999999999999988 699999976

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=5.2e-11  Score=100.34  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=39.2

Q ss_pred             hccCccccccccceeccCCcchhHHHHHHHhccc--cChhhhhhc
Q 039225          284 RQRLPIQDRLIKLKIVKNCFSGSEMVDVLTHHFK--CDRMKVRFV  326 (327)
Q Consensus       284 ~~~~~Ikdr~~~l~~~~~cF~G~ElvdwL~~~~~--~~r~~Av~~  326 (327)
                      +...+||||++++++|+|||+|+||||||+++.+  -+|++||.+
T Consensus        20 ~~~~likdr~~~l~~y~~cF~G~elVdWL~~~~~~~~sR~eAv~l   64 (142)
T d1o7fa1          20 RAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGM   64 (142)
T ss_dssp             HCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSSSCCSCHHHHHHH
T ss_pred             cCCcccceeEECCEEeCCeeEhHHHHHHHHHhCCCCCCHHHHHHH
Confidence            5577899999999999999999999999999876  489999976

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.89  E-value=2.9e-09  Score=82.53  Aligned_cols=59  Identities=25%  Similarity=0.423  Sum_probs=49.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IG  225 (327)
                      ..|++|+.+|||+|+.++.+|+++     ++.+..+|++.+++    +.+.+|..+||++|+||+.++
T Consensus        17 ~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~----l~~~~~I~~vPt~~~ng~~~~   80 (96)
T d1hyua4          17 FEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITERNVMGVPAVFVNGKEFG   80 (96)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTTCCSSSEEEETTEEEE
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchH----HHhhcccccccEEEECCEEEE
Confidence            358889999999999999999866     46788888887765    555679999999999999774

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.86  E-value=6.2e-09  Score=78.43  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=47.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHH-cCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeec
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQ-RGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGG  226 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~e-lgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG  226 (327)
                      |+||++++|+.|..|+++|.+ .++.++++||+.+++    |.+.+|.+ ||+|.++|..+-+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~----l~~~y~~~-IPVl~~~~~~~l~   59 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAA----LESAYGLR-VPVLRDPMGRELD   59 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHH----HHHHHTTT-CSEEECTTCCEEE
T ss_pred             EEEECCCCccHHHHHHHHHHhccCCcEEEEEccCCHH----HHHHhCCe-eeEEEECCeeEEc
Confidence            899999999999999998765 689999999998875    55667765 8999998754433

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=2e-08  Score=74.88  Aligned_cols=67  Identities=13%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      .||+...||||.+|+.+|..+|++|+.+++..+.  .+++.++++..+||++.. ||+.+....++.+..
T Consensus         2 kLY~~~~cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yL   69 (75)
T d1g7oa2           2 KLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMVGQKQVPILQKDDSRYMPESMDIVHYV   69 (75)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHHSSSCCCEEEETTTEEEECHHHHHHHH
T ss_pred             EEEccCCCCchHHHHHHHHHhCCCcccccccccc--hHHHHHhCCCCceEEEEEcCCCEEecHHHHHHHH
Confidence            4899999999999999999999999999987543  356888899999999997 679999998887754

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.42  E-value=7.3e-08  Score=72.35  Aligned_cols=60  Identities=20%  Similarity=0.357  Sum_probs=48.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE--Eeec
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK--LFGG  226 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe--~IGG  226 (327)
                      -.|++|+.+||++|++++..|+++    +  +.+..+|++.+++    +...+|..++|+++++|+  ++|.
T Consensus         3 v~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~~~~~G~   70 (85)
T d1nhoa_           3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYGLMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTCSSCSSEEEETTTEEEECS
T ss_pred             EEEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchh----hHHhcCceEeCEEEECCcEEEEcC
Confidence            468999999999999999888754    3  6788888887765    455689999999999986  4554

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=98.37  E-value=8e-07  Score=66.17  Aligned_cols=69  Identities=12%  Similarity=0.230  Sum_probs=55.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC-CCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG-SSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG-~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .+.||....||||++|+-+|..+|++|+.+.++....- +++.+... ...+|.+..||..|.....|.+.
T Consensus         3 ~mkLy~~~~sp~~~rvr~~l~~kgi~~e~~~v~~~~~~-~~~~~~~~~~~~~p~l~~dg~~i~eS~~I~~Y   72 (83)
T d1gwca2           3 DLKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLYKKS-ELLLKSNPVHKKIPVLIHNGAPVCESMIILQY   72 (83)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCC-HHHHHHSTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             eEEEEecCCChHHHHHHHHHHHCCCCeEEEEEeccchh-HHHHHHHhccCCCceeecCCceEcCHHHHHHH
Confidence            47899999999999999999999999999998764322 23444444 46789999999999888877665

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=98.37  E-value=9.6e-07  Score=66.29  Aligned_cols=68  Identities=13%  Similarity=0.203  Sum_probs=58.9

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC-hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF-PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d-~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .+|..+.||+|++++.+|.++|++|+.+.|+.. .+.++++.+++...+||++..||..+.....+.+.
T Consensus         2 ~LY~~~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~~~g~~l~eS~aI~~Y   70 (83)
T d1v2aa2           2 DYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLY   70 (83)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEECCCCChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhhccCCCEEEEccceeEcHHHHHHH
Confidence            599999999999999999999999999988753 45567888888999999999999988877776654

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=98.36  E-value=2.5e-07  Score=73.45  Aligned_cols=69  Identities=16%  Similarity=0.327  Sum_probs=56.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC----CEEeechHHHHHhh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN----DKLFGGLVALNSLR  234 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn----Ge~IGG~deL~~L~  234 (327)
                      ++++||+..+||||.+|+.+|..+|++|+.++++....  ..+ ...+..+||++++.    |+.++...+|.+..
T Consensus         1 m~i~LY~~~~sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~~-~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL   73 (113)
T d1z9ha2           1 LQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLR--AEI-KFSSYRKVPILVAQEGESSQQLNDSSVIISAL   73 (113)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTC--GGG-TTCSCCSSCEEEEEETTEEEEECSHHHHHHHH
T ss_pred             CEEEEEcCCCChHHHHHHHHHHHcCCeeEEeccCcccc--hhh-ccCccccccccccccCCCceEeecHHHHHHHH
Confidence            36899999999999999999999999999999975332  222 45788999999753    47899998887654

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=9.6e-07  Score=65.95  Aligned_cols=71  Identities=15%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++.||..+.|++|.+++-+|.++|++|+.+.|+.  ......++.++....+||++..||..+.+...|.+..
T Consensus         1 ~m~Ly~~~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~~~~~~l~eS~aI~~yL   73 (80)
T d1e6ba2           1 KLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYL   73 (80)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcCccccCCEEEECCEEEECHHHHHHHH
Confidence            4679999999999999999999999998887764  3445567788888999999999999988887776654

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7.7e-07  Score=67.85  Aligned_cols=70  Identities=13%  Similarity=0.273  Sum_probs=57.6

Q ss_pred             cEEEEEcC--------CChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRS--------NCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~--------~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .++||.|.        .||||++++-+|.++|++|+.+.|+... ..+++.+++....||++..||..+.....+.+..
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~nP~~~vPvL~~~~~~i~eS~~I~~YL   79 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFL   79 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHCTTCCSSEEEETTEEEECHHHHHHHH
T ss_pred             cEEEEEecCCCcCcCCCCHhHHHHHHHHHHHCCCcEEEEeeccc-ccHHHHHHhccCceeEEEEcccccccHHHHHHHH
Confidence            36778553        5999999999999999999988887632 2356888889999999999999998888776653

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.32  E-value=1.3e-06  Score=66.22  Aligned_cols=72  Identities=11%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhC-CCCccEEEeCCEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTG-SSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG-~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ...++||....||||++++-.|.++|++|+.+.++.... .+++.+++. ..+||.+..||..|.....+.+..
T Consensus         3 ~~~l~Ly~~~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~-~~~~~~~nP~~g~vP~L~~~g~~l~eS~~I~~YL   75 (84)
T d1oyja2           3 EKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNK-SDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYL   75 (84)
T ss_dssp             SCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCceEEEcCCCChHHHHHHHHHHHcCCCcEEEEEccCcC-CHHHHhhCCCcCcccEEEECCceEEcHHHHHHHH
Confidence            356999999999999999999999999999999876432 345667765 578999999999998888776653

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7e-07  Score=69.52  Aligned_cols=72  Identities=17%  Similarity=0.240  Sum_probs=58.8

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHhh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSLR  234 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L~  234 (327)
                      .+.++||....||||.+|+-+|.++|++|+.+.|+... ..+++.+++...+||++..+ |..|.....|.+..
T Consensus        17 ~~~~~Ly~~~~sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL   89 (98)
T d1eema2          17 EGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYL   89 (98)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHH
T ss_pred             CCcEEEEcCCCChHHHHHHHHHHHhCCCCEEEEecccC-CcHHHHhhhccccceeEEeCCCCEEcCHHHHHHHH
Confidence            35699999999999999999999999999988887532 23456777888999999985 68888877776553

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=2.8e-06  Score=64.98  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=58.9

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEe---CCEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFL---NDKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFI---nGe~IGG~deL~~L  233 (327)
                      +..++||+.++||+|.+|+-+|+++|++|+.+.|+..  .....++.++....+||++..   ||..|.....|...
T Consensus         3 ~~~~tLY~~~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~Y   79 (92)
T d1k0da2           3 LEGYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILLH   79 (92)
T ss_dssp             SSSEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHH
T ss_pred             CCceEEeeCCCCccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEcCHHHHHHH
Confidence            4569999999999999999999999999998888754  334467888888899999986   77777666666554

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=98.18  E-value=7.5e-07  Score=66.71  Aligned_cols=71  Identities=15%  Similarity=0.288  Sum_probs=59.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      +++||..+.||+|.+++-+|.++|++|+.+.|+..  .....++.+++...+||++..||..+.....|.+..
T Consensus         2 pm~Ly~~~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~aI~~YL   74 (81)
T d1aw9a2           2 PLKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYI   74 (81)
T ss_dssp             CEEEESCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEeCCCChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHhhcCeeEEEEECCcEEECHHHHHHHH
Confidence            47899999999999999999999999999888643  334456777788889999999999988887776653

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.14  E-value=1.7e-06  Score=66.45  Aligned_cols=57  Identities=16%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc----------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR----------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el----------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      |++|+.+||++|++++..|.++          .+.+..+|++..++    +.+.+|..++|++++  +|+.++
T Consensus        19 i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~----l~~~~~V~~vPTi~i~~~G~~~~   87 (107)
T d1a8la2          19 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYNVMAVPKIVIQVNGEDRV   87 (107)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTTCCSSCEEEEEETTEEEE
T ss_pred             EEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc----cccccccccceEEEEEeCCeEEE
Confidence            5559999999999999888764          25567778776554    666788999999865  676443

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.6e-06  Score=61.59  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=59.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .+.||..+.||+|++++-+|.++|++|+.+.|+..  .....++.++.....||++..||..+.....+.+..
T Consensus         2 ~m~LY~~~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~l~ES~aI~~yL   74 (79)
T d1ljra2           2 GLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYL   74 (79)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eEEEeeCCCChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhhhhcceeEEEeCCcEEEcHHHHHHHH
Confidence            36899999999999999999999999998888654  345567888888899999999999888877776553

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=98.02  E-value=1.1e-05  Score=60.69  Aligned_cols=69  Identities=9%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++||..+.|++|++++-+|+++|++|+.+.|+..  ....+++.++.-..+||.+..||..+.....+...
T Consensus         2 ~iLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (85)
T d1r5aa2           2 TVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSY   72 (85)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHHhcCCCCEEEEcccceecHHHHHHH
Confidence            7899999999999999999999999998888753  44567888888889999999999888777666554

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=98.00  E-value=7.9e-06  Score=60.93  Aligned_cols=71  Identities=13%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      .++||..+.|++|.+++-+|+++|++|+.+.|+..  .....++.+++...+||++..||..+.....|....
T Consensus         2 p~~Ly~~~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL   74 (80)
T d1axda2           2 PMKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYA   74 (80)
T ss_dssp             CEEEESCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhhccccCCEEEECCEEEECHHHHHHHH
Confidence            48899999999999999999999999998888653  344567888888899999999998887777666543

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.5e-05  Score=59.70  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC----hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF----PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d----~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      -+||..+.|++|.+++-+|.++|++|+.+.|+..    .....++.+++...+||.+..||..|.....|.+..
T Consensus         2 piLY~~~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~i~eS~aI~~yL   75 (83)
T d1fw1a2           2 PILYSYFRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYL   75 (83)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEEcCCCChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEEECCEEEecHHHHHHHH
Confidence            3699999999999999999999999988877542    234567888888999999999999988887776553

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=97.97  E-value=1.4e-05  Score=60.09  Aligned_cols=69  Identities=13%  Similarity=0.143  Sum_probs=56.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCC--ChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDV--FPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~--d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.+|..++|++|++++-+|.++|++|+.+.|+.  ......++.+++...+||++..||..|-....+.+.
T Consensus         1 mkLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~ES~aI~~y   71 (84)
T d1jlva2           1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTY   71 (84)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEcCCCCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHhccccCCEEEECCEEEEcHHHHHHH
Confidence            368999999999999999999999999988864  334556788888999999999988877666555443

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.96  E-value=6.8e-06  Score=64.72  Aligned_cols=57  Identities=19%  Similarity=0.489  Sum_probs=44.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG  225 (327)
                      |+.|+.+||+.|++++..|.++     ++.|..+|++..++    +.+.+|..++|++  |-||+.+.
T Consensus        30 vv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~   93 (113)
T d1r26a_          30 VAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKCRVLQLPTFIIARSGKMLG   93 (113)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCccchhhceeccccccccccccccccccccchh----hHHHccccCCCEEEEEECCEEEE
Confidence            4458889999999999888765     67788899987654    5567788999988  55887543

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.93  E-value=8.3e-06  Score=61.27  Aligned_cols=69  Identities=17%  Similarity=0.201  Sum_probs=56.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.||..+.|++|++++-+|.++|++|+.+.|+..  ....+++.+++-..+||.+..||..+.....|.+.
T Consensus         2 ~kLY~~~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (84)
T d1gnwa2           2 IKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQY   72 (84)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeCCCChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHhhcCcceEEEECCcEEecHHHHHHH
Confidence            6799999999999999999999999998888643  33445677777788999999999888777666554

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.91  E-value=2e-06  Score=63.57  Aligned_cols=59  Identities=25%  Similarity=0.482  Sum_probs=43.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE--Eeec
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK--LFGG  226 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe--~IGG  226 (327)
                      .|++|+.+||++|+.+...+.+.    +  +.+..+|.+.+++    +.+.+|..++|+++++++  ++|+
T Consensus         5 ~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~----la~~~~V~~~Pt~~i~~~g~~~G~   71 (85)
T d1fo5a_           5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEYGIMAVPTIVINGDVEFIGA   71 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTSTTTCCSSEEEETTEEECCSS
T ss_pred             EEEEEECCCCcChHhhhhhcccccccccccccccccccccccc----ccccCCceEeeEEEEECCcEEECC
Confidence            47789999999999998888653    3  3456677776554    445678999999988764  5554

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=97.91  E-value=1.6e-05  Score=61.14  Aligned_cols=59  Identities=20%  Similarity=0.455  Sum_probs=45.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeech
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGL  227 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~  227 (327)
                      ++.|+.+||+.|++++..|.+.      .+.+..+|++.+++    +.+.++..++|++++  +|+.++-+
T Consensus        24 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~I~~~Pt~~~~~~g~~v~~~   90 (108)
T d1thxa_          24 LVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKYKVEGVPALRLVKGEQILDST   90 (108)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHH----HHHHhcccCCCEEEEEECCEEEEEE
Confidence            4558899999999999888755      25678888887665    556678899999865  88866433

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.80  E-value=2.6e-05  Score=60.95  Aligned_cols=57  Identities=18%  Similarity=0.391  Sum_probs=42.7

Q ss_pred             EEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeec
Q 039225          166 SFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGG  226 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG  226 (327)
                      +.|+.+||+.|+++...|+++     ++.+..+|++..++    +.+.+|..++|++  |.||+.++.
T Consensus        33 v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~----l~~~~~V~~~Pt~~~~~~G~~v~~   96 (114)
T d1xfla_          33 VDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS----VASDWAIQAMPTFMFLKEGKILDK   96 (114)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEEE
T ss_pred             EEEEcCCCCCccccccchhhhcccccccceeEEEeeecee----eccccceeeeEEEEEEECCEEEEE
Confidence            338899999999998888764     45577788877665    4456788999987  468886543

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.3e-05  Score=59.29  Aligned_cols=59  Identities=22%  Similarity=0.468  Sum_probs=44.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeech
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGL  227 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~  227 (327)
                      |+.|+.+||+.|+.+...|.++     ++.+..+|++..++    +....|..++|++  |-||+.++.+
T Consensus        24 vv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~~V~~~Pt~~~~~~G~~v~~~   89 (105)
T d2ifqa1          24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASECEVKCMPTFQFFKKGQKVGEF   89 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCBSSEEEEEETTEEEEEE
T ss_pred             EEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHh----HHHHcCceEEEEEEEEECCEEEEEE
Confidence            3448999999999999888765     45577888887665    4556788999998  4589866533

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.78  E-value=4e-05  Score=59.80  Aligned_cols=74  Identities=15%  Similarity=0.363  Sum_probs=50.9

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHhhhc
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSLRNS  236 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L~es  236 (327)
                      |+.|+.+||++|+.++..|+++      .+.+..+|++..++    +.+..|..++|++  |-||+.++.+...    ..
T Consensus        28 vv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~v~~~~G~----~~   99 (112)
T d1ep7a_          28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAAGITAMPTFHVYKDGVKADDLVGA----SQ   99 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHHTCCBSSEEEEEETTEEEEEEESC----CH
T ss_pred             EEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccccc----ccccccccCCCEEEEEECCEEEEEEeCc----CH
Confidence            5558889999999999888654      36788888887654    5556788899987  4588865433221    12


Q ss_pred             CchHHHHHHh
Q 039225          237 GTFDERFREM  246 (327)
Q Consensus       237 GeL~~~Lk~~  246 (327)
                      .+|.++|++.
T Consensus       100 ~~l~~~i~k~  109 (112)
T d1ep7a_         100 DKLKALVAKH  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3466666554

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.4e-05  Score=59.33  Aligned_cols=60  Identities=18%  Similarity=0.298  Sum_probs=45.4

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLV  228 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~d  228 (327)
                      |+-|+.+||+.|+++...|+++     ++.|..+|++..++    +.+..|..++|++  |-||+.++.+.
T Consensus        25 vv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~v~~~~   91 (107)
T d1gh2a_          25 VVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG----TAATNNISATPTFQFFRNKVRIDQYQ   91 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEEEEEE
T ss_pred             EEEEECCCCCCccccchhhhccccccccccccccccccchh----hhhhcCceeceEEEEEECCEEEEEEe
Confidence            3348999999999998888654     56788889887665    4556788899986  56898765443

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.75  E-value=4e-05  Score=58.49  Aligned_cols=59  Identities=19%  Similarity=0.445  Sum_probs=45.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeech
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGL  227 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~  227 (327)
                      |+.|+.+||+.|+.+...|+++     ++.+..+|++..++    +.+..+..++|++  |.||+.++.+
T Consensus        22 vv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~~V~~~Pt~i~~k~G~~v~~~   87 (103)
T d1syra_          22 IVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKENITSMPTFKVYKNGSSVDTL   87 (103)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcc----eeeeeeeecceEEEEEECCEEEEEE
Confidence            4458999999999998888765     45678888887664    5556789999996  5599866533

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.64  E-value=6.7e-05  Score=58.34  Aligned_cols=72  Identities=17%  Similarity=0.344  Sum_probs=48.7

Q ss_pred             EEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHHhhhcCc
Q 039225          166 SFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNSLRNSGT  238 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~L~esGe  238 (327)
                      +-|+.+||+.|+.+...|+++     ++.+..+|++..++    +....|..++|++  |-||+.++.+...    ...+
T Consensus        31 v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~I~~~Pt~~~~k~G~~v~~~~G~----~~~~  102 (113)
T d1ti3a_          31 VDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKA----VAEEWNVEAMPTFIFLKDGKLVDKTVGA----DKDG  102 (113)
T ss_dssp             EEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHH----HHHHHHCSSTTEEEEEETTEEEEEEECC----CTTH
T ss_pred             EEEEcCccccchhhhhhhhhhhccCCCceEEeeeeecccc----ccccCeecccceEEEEECCEEEEEEcCC----CHHH
Confidence            338899999999998888754     44577788876665    4455678889988  5689865433221    1235


Q ss_pred             hHHHHHH
Q 039225          239 FDERFRE  245 (327)
Q Consensus       239 L~~~Lk~  245 (327)
                      |.++|++
T Consensus       103 l~~~i~k  109 (113)
T d1ti3a_         103 LPTLVAK  109 (113)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666655

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=4e-05  Score=60.68  Aligned_cols=47  Identities=19%  Similarity=0.451  Sum_probs=41.5

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGS  211 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~  211 (327)
                      |+||..+.|..|++|+++|++.|++|+.+|+..++-..++|.++...
T Consensus         2 i~ly~~~~C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll~~   48 (114)
T d1z3ea1           2 VTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRM   48 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHT
T ss_pred             EEEEcCCCCHHHHHHHHHHHHCCCCeEEEeeeccCCCHHHHHHHHHH
Confidence            78999999999999999999999999999999887666677766543

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=7.4e-05  Score=57.11  Aligned_cols=57  Identities=18%  Similarity=0.360  Sum_probs=41.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      ++.|+.+||++|+.+...+.+.    +  +.+..+|++..+.    +...+|..++|+++  .+|+.++
T Consensus        24 ~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~PT~~~~~~G~~v~   88 (108)
T d2trxa_          24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVAA   88 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhh----HHHHhCCCcEEEEEEEECCEEEE
Confidence            3448899999999988777543    3  3456677776654    55677889999874  4887554

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.49  E-value=0.00017  Score=55.03  Aligned_cols=57  Identities=21%  Similarity=0.350  Sum_probs=42.8

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      |+.|+.+||++|++....+.+.      .+.+..+|++..++    +.+.++..++|+++  .||+.++
T Consensus        23 lv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~   87 (107)
T d1dbya_          23 LVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEYGIRSIPTIMVFKGGKKCE   87 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHHTCCSSCEEEEESSSSEEE
T ss_pred             EEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchh----HHHHhcccceEEEEEEECCeEEE
Confidence            4459999999999998877654      34577788886654    55668889999984  4787654

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=0.00016  Score=55.68  Aligned_cols=56  Identities=14%  Similarity=0.249  Sum_probs=40.7

Q ss_pred             EEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEeech
Q 039225          168 FSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFGGL  227 (327)
Q Consensus       168 Ysk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IGG~  227 (327)
                      |+.+||+.|++.+..|+++    +  +.+..+|++..++    +.+..|...+|+++  -||+.++.+
T Consensus        32 f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~~~   95 (111)
T d1xwaa_          32 FFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYNISSMPTFVFLKNGVKVEEF   95 (111)
T ss_dssp             EECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred             EECCcccCccccchhHHHHhhhcccceEEEEEEeecCcc----hhhcCCCccccEEEEEECCEEEEEE
Confidence            9999999999999888765    2  3456667665554    55667888899874  588765433

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.48  E-value=0.00025  Score=54.98  Aligned_cols=63  Identities=16%  Similarity=0.194  Sum_probs=45.0

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH----cCCceEEEEcCCCh--hHHHHHHHHhCCCCccEEEe--CCEEee
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ----RGLKFVEINVDVFP--PREKELIRRTGSSQVPQVFL--NDKLFG  225 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e----lgV~y~eiDVd~d~--e~~~eL~~ltG~~tVPqIFI--nGe~IG  225 (327)
                      .-++.|+++||++|+++...|.+    ++..+..++++...  +..+.+.+..|..++|++++  +|+.+.
T Consensus        28 ~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~gk~~~   98 (115)
T d1zmaa1          28 TATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINV   98 (115)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEE
T ss_pred             CEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEECCEEEE
Confidence            34666778999999999877754    46666777887543  33345677789999999953  777543

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.47  E-value=0.00021  Score=55.61  Aligned_cols=58  Identities=17%  Similarity=0.330  Sum_probs=42.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEee
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFG  225 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IG  225 (327)
                      |+.|+.+||+.|+.+...|+++     ++.+..+|++...   .+|.+..|..++|+++  -||+.++
T Consensus        29 vv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~---~~l~~~~~V~~~Pt~~~~k~G~~v~   93 (112)
T d1f9ma_          29 VLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQEN---KTLAKELGIRVVPTFKILKENSVVG   93 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTT---HHHHHHHCCSSSSEEEEEETTEEEE
T ss_pred             EEEEEcCCCcchHHHHHHHhhhccccccceeecccccccc---hhhHhheeeccCCEEEEEECCEEEE
Confidence            4448899999999999888764     4556777776421   2466667889999984  4888654

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=97.46  E-value=0.00027  Score=53.45  Aligned_cols=58  Identities=17%  Similarity=0.312  Sum_probs=42.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeec
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGG  226 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG  226 (327)
                      ++.|+.+||+.|+++...+.++    +  +.+..+|++.+++    +.+.+|..++|++  |-+|+.++.
T Consensus        21 lv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~~   86 (104)
T d1fb6a_          21 MVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYNIRSIPTVLFFKNGERKES   86 (104)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEEE
T ss_pred             EEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchh----hhhhcceeeeeEEEEEEcCeEEEE
Confidence            4448899999999999887665    2  3456667776553    6667889999998  458876543

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=97.44  E-value=0.00028  Score=53.53  Aligned_cols=58  Identities=17%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEee
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFG  225 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IG  225 (327)
                      -|+.|+.+||+.|+.+...|.++      .+.+..+|++..+.    +...++..++|++  |-+|+.++
T Consensus        20 vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~----~~~~~~V~~~Pt~~~~~~G~~~~   85 (105)
T d1nw2a_          20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE----TTSQFGIMSIPTLILFKGGEPVK   85 (105)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH----HHHHTTCCBSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcc----cHHHCCcceeeEEEEEECCEEEE
Confidence            46668899999999998888654      46788899987665    4556788999988  45887654

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0003  Score=51.17  Aligned_cols=70  Identities=17%  Similarity=0.085  Sum_probs=56.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +++||+.+.++.|..++-+|...|++|+.+.++.......+.....-..+||++..||..|.....|...
T Consensus         2 ~~~L~yf~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~~~g~~i~eS~aI~~y   71 (77)
T d2a2ra2           2 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRH   71 (77)
T ss_dssp             SEEEEECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CEEEEEcCCchhHHHHHHHHHHcCCCcEEEEecccccccccccccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            4789888999999999999999999999999986544333444455567899999999999888777654

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.37  E-value=5.6e-05  Score=59.65  Aligned_cols=45  Identities=9%  Similarity=0.197  Sum_probs=37.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR  208 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l  208 (327)
                      .++||..+.|.-|++|+++|++.|++|+.+|+..++-...+|.++
T Consensus         1 t~~iY~~p~Cs~srka~~~L~~~~i~~~~idy~k~pls~~eL~~l   45 (114)
T d1rw1a_           1 TYVLYGIKACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRW   45 (114)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCeEEEEccccCCCHHHHHHH
Confidence            379999999999999999999999999999998765444455444

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.35  E-value=0.0002  Score=53.69  Aligned_cols=57  Identities=16%  Similarity=0.403  Sum_probs=44.8

Q ss_pred             CCcEEEEEcCCChhHHHH----HHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEe
Q 039225          162 KGRISFFSRSNCRDCTAV----RRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLF  224 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~a----k~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~I  224 (327)
                      |++|.+| .++|+.|.++    ++.+.++|+..+...|..   . +++.+ +|..++|.++|||+.+
T Consensus         1 Mm~IkVl-g~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d---~-~ei~~-ygVmstPalvIdg~vv   61 (77)
T d1iloa_           1 MMKIQIY-GTGCANCQMLEKNAREAVKELGIDAEFEKIKE---M-DQILE-AGLTALPGLAVDGELK   61 (77)
T ss_dssp             CEEEEEE-CSSSSTTHHHHHHHHHHHHHTTCCEEEEEECS---H-HHHHH-HTCSSSSCEEETTEEE
T ss_pred             CcEEEEe-CCCCccHHHHHHHHHHHHHHcCCceEEEEeCC---H-HHHHH-cCCcCCCEEEECCEEE
Confidence            3568888 5899999955    556788999999888862   2 24554 7999999999999855

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00053  Score=49.86  Aligned_cols=69  Identities=7%  Similarity=0.067  Sum_probs=57.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ++.||+.+.++.|..+|-+|...|++|+++.++.+  ...+..+.+...+||.+.+||..|.....|.+..
T Consensus         2 ~~kL~yf~~~~~~~~vRl~L~~~gi~~e~~~~~~~--~~~~~~~~~p~g~vP~L~~~g~~l~qS~AI~~yL   70 (74)
T d2cvda2           2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYL   70 (74)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCCEecccccc--cchhhcccCCCCCcCEEEECCEEEEcHHHHHHHH
Confidence            47899999999999999999999999999998853  3345666667789999999999888777666543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00013  Score=59.51  Aligned_cols=54  Identities=11%  Similarity=0.106  Sum_probs=43.8

Q ss_pred             EEEcCCChhHHHHHHHHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          167 FFSRSNCRDCTAVRRFFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       167 LYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      .|+.+||+.|+++..+|.++      .+.+-.+|++..++    +.+.++..++|++  |.+|+++
T Consensus        28 ~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~----la~~~~I~~~PT~~~f~~g~~i   89 (137)
T d1qgva_          28 RFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYELYDPCTVMFFFRNKHI   89 (137)
T ss_dssp             EEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSCSCSSCEEEEEETTEEE
T ss_pred             EEECCCCccchhcChHHHHHHHHhhccceEEEeeccccch----hhhhcCeeeEEEEEEEeCCcEE
Confidence            38999999999999998765      25678889987775    5556788999998  6799877

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0013  Score=53.63  Aligned_cols=70  Identities=21%  Similarity=0.274  Sum_probs=45.6

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc---CCceEEEEcCC---C-------------------------------------
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR---GLKFVEINVDV---F-------------------------------------  198 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiDVd~---d-------------------------------------  198 (327)
                      +..|++|+-..||||+++...|+++   ++.+..+..-.   +                                     
T Consensus        27 k~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (156)
T d1eeja1          27 KHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVD  106 (156)
T ss_dssp             CEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSCC
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcch
Confidence            4468889999999999997666544   44444333311   0                                     


Q ss_pred             hhHHHHHHHHhCCCCccEEEe-CCEEeechHHHH
Q 039225          199 PPREKELIRRTGSSQVPQVFL-NDKLFGGLVALN  231 (327)
Q Consensus       199 ~e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~  231 (327)
                      -+...++.+..|.+.+|.+|+ ||+.|-|+-...
T Consensus       107 i~~~~~la~~lgv~GTPt~~~~nG~~v~G~~~~e  140 (156)
T d1eeja1         107 IADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPK  140 (156)
T ss_dssp             HHHHHHHHHHHTCCSSSEEECTTSCEEESCCCHH
T ss_pred             HHHHHHHHHHcCCcCCCEEEEeCCeEecCCCCHH
Confidence            111223455568999999888 889998874433

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.0011  Score=51.40  Aligned_cols=55  Identities=13%  Similarity=0.276  Sum_probs=41.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      -++.|+.+||+.|+++...++++       ++.+-.+|++...    ++....+..++|+|++  +|+
T Consensus        30 ~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pti~~f~~g~   93 (119)
T d2b5ea4          30 VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ----DLCMEHNIPGFPSLKIFKNSD   93 (119)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH----HHHHHTTCCSSSEEEEEETTC
T ss_pred             EEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchH----HHHHHhccccCCeEEEEECCE
Confidence            36678899999999988777653       3667788888654    3566678899999965  764

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00032  Score=57.34  Aligned_cols=45  Identities=18%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHH
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRR  208 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~l  208 (327)
                      .|+||..+.|.-|++|+++|++.|++|+.+|+..++-...+|..+
T Consensus         1 ni~iY~~p~Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~l   45 (138)
T d1j9ba_           1 NITIYHNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKL   45 (138)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHH
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCCeEEEeeccCCCCHHHHHHH
Confidence            378999999999999999999999999999998876555555544

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0011  Score=52.10  Aligned_cols=58  Identities=17%  Similarity=0.295  Sum_probs=40.6

Q ss_pred             CCChhHHHHHHHHHHc------CCceEEEEcCCChhHH---HHHHHHhCCCCccEEEe--CCEEeechH
Q 039225          171 SNCRDCTAVRRFFKQR------GLKFVEINVDVFPPRE---KELIRRTGSSQVPQVFL--NDKLFGGLV  228 (327)
Q Consensus       171 ~~Cp~C~~ak~iL~el------gV~y~eiDVd~d~e~~---~eL~~ltG~~tVPqIFI--nGe~IGG~d  228 (327)
                      +||+.|+++...+.++      ++.+..+|++..++..   ..+.+.+|..++|++++  +|+.+.|.+
T Consensus        38 sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT~i~~~~g~~l~~~~  106 (119)
T d1woua_          38 SWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESE  106 (119)
T ss_dssp             BSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSSCEEEGGG
T ss_pred             CCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEEEEEEEEECCeEEeeee
Confidence            4999999999998765      2456778886544332   24666789999999753  566665543

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.002  Score=49.17  Aligned_cols=55  Identities=13%  Similarity=0.303  Sum_probs=40.3

Q ss_pred             EEEEEcCCChhHHHHHHHH-------HHc-CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          165 ISFFSRSNCRDCTAVRRFF-------KQR-GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL-------~el-gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      ++.|+.+||++|++....+       +.+ ++....+|+..+.+...+|.+..|...+|++++
T Consensus        26 lv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   88 (117)
T d2fwha1          26 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILF   88 (117)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             EEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEE
Confidence            4458889999999986543       222 344567777777776677888889999999863

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.39  E-value=0.0026  Score=51.51  Aligned_cols=71  Identities=18%  Similarity=0.290  Sum_probs=45.6

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHc---CCceEEEE--cCC-Chh-----------------------------------
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQR---GLKFVEIN--VDV-FPP-----------------------------------  200 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~el---gV~y~eiD--Vd~-d~e-----------------------------------  200 (327)
                      +..|++|+-..||||+++...++.+   ++.+..+.  +.. ++.                                   
T Consensus        27 k~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~~  106 (150)
T d1t3ba1          27 KHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNI  106 (150)
T ss_dssp             SEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSSH
T ss_pred             CEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhhH
Confidence            3458889999999999997655544   33333332  211 110                                   


Q ss_pred             H--HHHHHHHhCCCCccEEEe-CCEEeechHHHHH
Q 039225          201 R--EKELIRRTGSSQVPQVFL-NDKLFGGLVALNS  232 (327)
Q Consensus       201 ~--~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~  232 (327)
                      +  -.++.+..|.+..|.+|+ ||+.|-|+-...+
T Consensus       107 i~~~~~la~~lGv~GTPt~~~~nG~~i~G~~~~~~  141 (150)
T d1t3ba1         107 VKKHYELGIQFGVRGTPSIVTSTGELIGGYLKPAD  141 (150)
T ss_dssp             HHHHHHHHHHHTCCSSCEEECTTSCCCCSCCCHHH
T ss_pred             HHHHHHHHHhcCcCCCCEEEEcCCcEecCCCCHHH
Confidence            1  123455578999999888 8999988754433

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.0007  Score=53.49  Aligned_cols=64  Identities=11%  Similarity=0.147  Sum_probs=36.3

Q ss_pred             CcEEE--EEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCEEeechH
Q 039225          163 GRISF--FSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDKLFGGLV  228 (327)
Q Consensus       163 ~kVvL--Ysk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe~IGG~d  228 (327)
                      .++++  |..+|||.|+++...|.++     +..+....|+  -+...++.+.+|..++|+++  -||+.++.+.
T Consensus        30 ~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd--~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~  102 (119)
T d2es7a1          30 DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVAD--LEQSEAIGDRFNVRRFPATLVFTDGKLRGALS  102 (119)
T ss_dssp             SEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEEC--HHHHHHHHHTTTCCSSSEEEEESCC----CEE
T ss_pred             CcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEE--CCCCHHHHHhcCcCcceEEEEEEcCeEEEEee
Confidence            34444  3457999999999888765     3334433343  23445688889999999984  5888666443

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.34  E-value=0.0049  Score=44.85  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=55.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +...||+.+..+.|..+|-+|...|++|+.+.++.+.  ..+.++..-..++|.+.+||..+.....+...
T Consensus         2 ~s~kL~Yf~~~g~~e~iRl~L~~~gi~yed~~~~~~~--~~~~~~~~p~g~lP~l~~~g~~l~qS~aI~~Y   70 (76)
T d1m0ua2           2 HSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMPMGQMPVLEVDGKRVHQSISMARF   70 (76)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEETTEEEECHHHHHHH
T ss_pred             ccEEEEecCCchHHHHHHHHHHHcCCCCEEecCChhh--hhhhhccCcCCCCcEEEECCcccccHHHHHHH
Confidence            5678888888888999999999999999999887533  34555556667899999999988887776654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00061  Score=54.98  Aligned_cols=80  Identities=9%  Similarity=0.114  Sum_probs=52.9

Q ss_pred             CcEEE--EEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCEEeechHHHHHh
Q 039225          163 GRISF--FSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvL--Ysk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe~IGG~deL~~L  233 (327)
                      .++++  |..+|||.|+++..+|.++.     ..+....|+  -+...+|.+.+|..++|++++  ||+.+|.+...+..
T Consensus        36 ~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd--~d~~~~la~~~~V~~~PT~~~~~~G~~v~~~~G~~~~  113 (132)
T d2hfda1          36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD--LEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW  113 (132)
T ss_dssp             EEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEEC--HHHHHHHHHHHTCCSCCEEEEEETTEEEEEECCCSCH
T ss_pred             CcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEE--ecCCHHHHHhhccCcceeEEEEEcCcEeeeecCCCCH
Confidence            34554  45689999999998888762     223333344  233457888899999998854  99988866544332


Q ss_pred             hhcCchHHHHHHhh
Q 039225          234 RNSGTFDERFREML  247 (327)
Q Consensus       234 ~esGeL~~~Lk~~~  247 (327)
                         .+|..+|+...
T Consensus       114 ---~~l~~~i~~ll  124 (132)
T d2hfda1         114 ---AELINLMRGLV  124 (132)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHh
Confidence               34566666554

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=96.23  E-value=0.0062  Score=44.05  Aligned_cols=68  Identities=10%  Similarity=0.090  Sum_probs=55.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.+||..+.-+.|..+|-+|...|++|+.+.++.+.  ..+.+......++|.+.+||..|.....|.+.
T Consensus         2 ~~~L~yf~~~g~~~~iRl~L~~~gi~ye~~~~~~~~--~~~~~~~~p~g~lPvL~~~g~~i~eS~aI~~y   69 (75)
T d2gsqa2           2 KYTLHYFPLMGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATMYSNAMPVLDIDGTKMSQSMCIARH   69 (75)
T ss_dssp             CEEEEECSSSGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSGGGSSCEEEETTEEECCHHHHHHH
T ss_pred             CEEEEecCCchhHHHHHHHHHHcCCCchhhcccccc--chhhhhccccCCcCEEEECCeeeecHHHHHHH
Confidence            467888888899999999999999999999988653  34455555667899999999988877766654

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0016  Score=50.04  Aligned_cols=55  Identities=13%  Similarity=0.257  Sum_probs=38.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc---------CCceEEEEcCCChhHHHHHHHHhCCCCccEEE--eCCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR---------GLKFVEINVDVFPPREKELIRRTGSSQVPQVF--LNDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el---------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF--InGe  222 (327)
                      -++.|+.+||++|++++..+.+.         .+.+..+|++....+    ....+...+|+++  .+|+
T Consensus        27 vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~G~   92 (120)
T d1meka_          27 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDL----AQQYGVRGYPTIKFFRNGD   92 (120)
T ss_dssp             EEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSS----HHHHTCCSSSEEEEEESSC
T ss_pred             EEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhH----HHHhCCccCCeEEEEECCe
Confidence            36668999999999887666432         256778888876653    3456788899863  3664

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=96.12  E-value=0.0053  Score=44.65  Aligned_cols=69  Identities=13%  Similarity=0.065  Sum_probs=54.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHhh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSLR  234 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L~  234 (327)
                      ..+||+.+..+.|..++-+|...|++|+.+.++...  ..+........++|++..||..|.....|....
T Consensus         2 ~~kL~Yf~~~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~lPvL~~~~~~l~qS~AI~~YL   70 (77)
T d1tu7a2           2 SYKLTYFSIRGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQFGQLPCLYDGDQQIVQSGAILRHL   70 (77)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEecCCcHHHHHHHHHHHHcCCCceeeeccccc--chhhcccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            367877788899999999999999999988886432  233445567789999999999998887776543

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.97  E-value=0.019  Score=41.71  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHH---HHHHH--HhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPRE---KELIR--RTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~---~eL~~--ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .++++|+.+.-+.|..++-+|...|++|+.+.++.+....   +....  .+-...+|.+..||..+.....+...
T Consensus         3 ~~i~L~Y~~~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~~y   78 (85)
T d1okta2           3 DNIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVRY   78 (85)
T ss_dssp             CCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHHH
T ss_pred             CCeEEEEcCCchhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHHHHH
Confidence            5699988888889999999999999999998887653222   12222  12357899999999988877666554

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=95.96  E-value=0.0078  Score=43.44  Aligned_cols=69  Identities=14%  Similarity=0.036  Sum_probs=51.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHH-HHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREK-ELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~-eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .++|+.+..+.|..++-+|...|++|+.+.++..+.... ......-..++|.+..||..|.....|...
T Consensus         2 pkL~yf~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~y   71 (77)
T d1gula2           2 PKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHY   71 (77)
T ss_dssp             CEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEcCCcchHHHHHHHHHHcCCCceEEeeccccccchhhhcccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            467777888999999999999999999988875433221 122223457899999999988777666554

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.0028  Score=50.28  Aligned_cols=55  Identities=13%  Similarity=0.238  Sum_probs=37.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe--CCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL--NDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI--nGe  222 (327)
                      -++.|+.+||++|+++...|.++       +..+..++++.+..    +....+..++|+|++  +|+
T Consensus        33 vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~----~~~~~~v~~~Ptl~~f~~g~   96 (140)
T d2b5ea1          33 VLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN----DVRGVVIEGYPTIVLYPGGK   96 (140)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC----CCSSCCCSSSSEEEEECCTT
T ss_pred             EEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccch----hccccccccCCeEEEEECCE
Confidence            36779999999999998877654       33455556654433    233467789998854  554

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=95.66  E-value=0.0036  Score=45.53  Aligned_cols=70  Identities=16%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHH-HHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPRE-KELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~-~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.+||+-+..+.|..++-+|...|++|+.+.++...... ...........||.+..||..+.....|...
T Consensus         3 K~kL~yf~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rY   73 (78)
T d1b48a2           3 KPKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSY   73 (78)
T ss_dssp             CCEEEBCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHH
T ss_pred             CcEEEEcCCchHHHHHHHHHHHcCCCcEEEEEcchhhhcchhhcccccCCCCCEEEeCCeEEECHHHHHHH
Confidence            467888888999999999999999999988887533221 1112223446899999999988877666554

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=95.59  E-value=0.02  Score=41.50  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=53.2

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ....|++.+.=..|..+|-+|...|++|+++.++.  +.....+......++|.+.+||..|....-|.+.
T Consensus         2 ~~~kL~Yf~~~gr~e~vR~~L~~~gi~ye~~~~~~--~~~~~~~~~~p~g~lPvL~~~g~~i~qS~AI~~y   70 (77)
T d1tw9a2           2 VHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRY   70 (77)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CCeEEEECCCchHHHHHHHHHHHcCCCceeeeccc--ccchhhhhhcccCCCCEEEECCEEEEcHHHHHHH
Confidence            34567666677899999999999999999999874  3333445556678899999999988877766554

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=95.33  E-value=0.023  Score=47.44  Aligned_cols=89  Identities=16%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc----C--CceEEEEcCC---C----hh-HHHH-----------------HHHHhCCC
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR----G--LKFVEINVDV---F----PP-REKE-----------------LIRRTGSS  212 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el----g--V~y~eiDVd~---d----~e-~~~e-----------------L~~ltG~~  212 (327)
                      -|+.|+.+|||+|++....|.++    +  +.+.-++...   +    .+ .++.                 +.+.+|..
T Consensus        35 vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~~v~  114 (187)
T d2cvba1          35 LAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAYRAL  114 (187)
T ss_dssp             EEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCC
T ss_pred             EEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccccccc
Confidence            35669999999998776555443    3  3344444311   1    11 2211                 33334667


Q ss_pred             CccEEEe---CCE--EeechHHHHH---hhhcCchHHHHHHhhccCCC
Q 039225          213 QVPQVFL---NDK--LFGGLVALNS---LRNSGTFDERFREMLGRKCS  252 (327)
Q Consensus       213 tVPqIFI---nGe--~IGG~deL~~---L~esGeL~~~Lk~~~~~~~~  252 (327)
                      .+|.+|+   +|+  +.|..|+-..   ...+.+|...|+.+.+++..
T Consensus       115 ~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~~  162 (187)
T d2cvba1         115 RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEEP  162 (187)
T ss_dssp             EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCCC
T ss_pred             ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCCC
Confidence            8998775   455  4477665221   22344688888888876554

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.0033  Score=54.38  Aligned_cols=63  Identities=16%  Similarity=0.298  Sum_probs=44.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcC-----CceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEeechHHHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRG-----LKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLFGGLVALNS  232 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elg-----V~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~IGG~deL~~  232 (327)
                      |+-|+.+||+.|+.+...|..+.     +.|..+|.+..+     +...++...+|+|  |-||+.++.+-.+..
T Consensus       124 vvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-----~~~~~~i~~lPtl~~yk~G~~v~~~vg~~~  193 (217)
T d2trcp_         124 VVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-----AGDRFSSDVLPTLLVYKGGELISNFISVAE  193 (217)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-----CSTTSCGGGCSEEEEEETTEEEEEETTGGG
T ss_pred             EEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccch-----hHHhCCCCCCCeEEEEECCEEEEEEECccc
Confidence            33489999999999999998873     556777665322     2234566789987  569998885554443

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.21  E-value=0.037  Score=43.89  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=19.5

Q ss_pred             hCCCCccEEEeCCEEeechHHHHHh
Q 039225          209 TGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       209 tG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      .|...+|++||||+.+.|.....++
T Consensus       142 ~gI~gTPt~~Ing~~~~g~~~~~~~  166 (172)
T d1z6ma1         142 AHIQFVPTIIIGEYIFDESVTEEEL  166 (172)
T ss_dssp             HTCCSSCEEEETTEEECTTCCHHHH
T ss_pred             cCCCcCCEEEECCEEecCCCCHHHH
Confidence            5778999999999999776544433

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.06  E-value=0.014  Score=45.18  Aligned_cols=57  Identities=11%  Similarity=0.247  Sum_probs=38.1

Q ss_pred             cEEEEEcCCChhHH------HHHHHHH-------HcCCceEEEEcCCChhHHHHHHHHhCCCCccEE--EeCCEEe
Q 039225          164 RISFFSRSNCRDCT------AVRRFFK-------QRGLKFVEINVDVFPPREKELIRRTGSSQVPQV--FLNDKLF  224 (327)
Q Consensus       164 kVvLYsk~~Cp~C~------~ak~iL~-------elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI--FInGe~I  224 (327)
                      -+++|+.+||++|.      .+...+.       ..++.+-.+|.+.+.+    +....+...+|+|  |.+|+.+
T Consensus        31 ~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~----l~~~~~I~~yPTi~~f~~g~~~  102 (124)
T d1a8ya1          31 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA----VAKKLGLTEEDSIYVFKEDEVI  102 (124)
T ss_dssp             EEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHH----HHHTTTCCSTTCEEEEESSSEE
T ss_pred             EEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccc----hhhccccccCCcEEEeccCccE
Confidence            47889999998653      3333333       3357788899887664    5555677777777  4577655

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0062  Score=44.32  Aligned_cols=68  Identities=19%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--h-hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--P-PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~-e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      .||+.++.+ +.+++-+|.++|++|+.+.|+..  . ....++.+++....||++.. ||..+.....|.+..
T Consensus         2 kLY~~p~s~-s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL   73 (80)
T d1n2aa2           2 KLFYKPGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYL   73 (80)
T ss_dssp             EEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             EEEeCCCcc-HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHHH
Confidence            368877654 68899999999999887766432  2 23345667778889999987 457777776666543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.99  E-value=0.0029  Score=51.77  Aligned_cols=57  Identities=12%  Similarity=0.148  Sum_probs=35.8

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN  220 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn  220 (327)
                      ..+++|+.+|||+|++..-.|.++     ++.+..++++.+++..+.... .+...+|.+++.
T Consensus        56 ~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~-~~~~~~p~~~~~  117 (166)
T d1z6na1          56 YRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLA-LERIAIPLVLVL  117 (166)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTT-CSSCCSSEEEEE
T ss_pred             eEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHH-hccccccceeec
Confidence            357889999999999998888765     345666666644332222221 144566666553

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.024  Score=41.20  Aligned_cols=70  Identities=6%  Similarity=-0.032  Sum_probs=51.3

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChh--H-H-----HHHHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPP--R-E-----KELIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e--~-~-----~eL~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      ++++|+.+.-+.|..+|-+|...|++|+.+.++.+..  . .     .+.+..+-...+|.+..+|..|.....|...
T Consensus         1 P~~L~Y~~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AIl~Y   78 (84)
T d2c4ja2           1 PMTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRY   78 (84)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHHH
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHHHHHH
Confidence            4778777788899999999999999999988876431  1 1     1122223357799999999988777666554

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=94.57  E-value=0.038  Score=41.51  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR  186 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el  186 (327)
                      -++.|+.+||++|+++...+.++
T Consensus        23 vlV~fya~wC~~Ck~~~p~~~~l   45 (116)
T d2djja1          23 VLIEFYAPWCGHCKALAPKYEEL   45 (116)
T ss_dssp             EEEEEECSSCTTHHHHHHHHHHH
T ss_pred             EEEEEEecccccccccchHHHHH
Confidence            47789999999999999888766

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.56  E-value=0.059  Score=41.75  Aligned_cols=53  Identities=15%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF  218 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF  218 (327)
                      |+.|+.+|||.|.+....|+++     ++.+..++.+.+.+..+++.+..+ .++|.++
T Consensus        28 ll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~-~~~p~~~   85 (134)
T d1lu4a_          28 VLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYN-LNFTNLN   85 (134)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHT-CCSEEEE
T ss_pred             EEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhc-cccceee
Confidence            4557789999999987777543     567777777766544444444344 3566543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=94.56  E-value=0.097  Score=41.04  Aligned_cols=60  Identities=22%  Similarity=0.434  Sum_probs=35.7

Q ss_pred             EEEcCCChhHHHHHHHHH----Hc----CCceEEEEcCCChh--------------------HHHHHHHHhCCCCccEEE
Q 039225          167 FFSRSNCRDCTAVRRFFK----QR----GLKFVEINVDVFPP--------------------REKELIRRTGSSQVPQVF  218 (327)
Q Consensus       167 LYsk~~Cp~C~~ak~iL~----el----gV~y~eiDVd~d~e--------------------~~~eL~~ltG~~tVPqIF  218 (327)
                      -|+.+||+.|++....|+    ++    ++.+.-+.++...+                    ...++.+.+|...+|.+|
T Consensus        34 ~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~  113 (144)
T d1o73a_          34 YFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLI  113 (144)
T ss_dssp             EEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEE
T ss_pred             EeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCCCcCCEEE
Confidence            377899999998765553    33    23334444443321                    122355567888899986


Q ss_pred             -e--C-CEEeec
Q 039225          219 -L--N-DKLFGG  226 (327)
Q Consensus       219 -I--n-Ge~IGG  226 (327)
                       |  + |+.|+.
T Consensus       114 lID~~~G~Ii~~  125 (144)
T d1o73a_         114 TINADTGAIIGT  125 (144)
T ss_dssp             EEETTTCCEEES
T ss_pred             EEECCCCEEEee
Confidence             4  3 666653

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.54  E-value=0.1  Score=41.24  Aligned_cols=60  Identities=20%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             cCCcEE-E-EEcCCChhHHHHHHHHHH----cC--CceEE--EEcCCChh--------------------HHHHHHHHhC
Q 039225          161 IKGRIS-F-FSRSNCRDCTAVRRFFKQ----RG--LKFVE--INVDVFPP--------------------REKELIRRTG  210 (327)
Q Consensus       161 ~~~kVv-L-Ysk~~Cp~C~~ak~iL~e----lg--V~y~e--iDVd~d~e--------------------~~~eL~~ltG  210 (327)
                      .+++++ | |+.+||+.|++....|.+    ++  ..++.  +.++.+.+                    ....|.+.+|
T Consensus        26 l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC
Confidence            344444 3 778999999977655533    32  23444  44443321                    1233556678


Q ss_pred             CCCccEEE-eC
Q 039225          211 SSQVPQVF-LN  220 (327)
Q Consensus       211 ~~tVPqIF-In  220 (327)
                      ...+|.++ ||
T Consensus       106 v~~iPt~~lid  116 (144)
T d1i5ga_         106 VKSIPTLVGVE  116 (144)
T ss_dssp             CCSSSEEEEEE
T ss_pred             CCCcCEEEEEe
Confidence            88999765 54

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=94.50  E-value=0.039  Score=39.89  Aligned_cols=69  Identities=14%  Similarity=0.079  Sum_probs=51.1

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHH--HhCCCCccEEEeCCEEeechHHHHHh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIR--RTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~--ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +.+||+-+.-+.|..++-+|...|++|+++.+...... .....  .+-..++|.+.+||..|....-|.+.
T Consensus         3 k~kL~Yf~~~grae~irl~L~~~gv~yed~~~~~~~~~-~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~Y   73 (79)
T d1k3ya2           3 KPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAEDL-DKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNY   73 (79)
T ss_dssp             CCEEEEESSSTTTHHHHHHHHHHTCCCEEEEECSHHHH-HHHHHTTCCTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CcEEEEcCCcHHHHHHHHHHHHcCCCceEEEecchhhh-hhhcccccCCCCCCCEEEECCeEEEcHHHHHHH
Confidence            45677777778999999999999999999988754322 22222  23357899999999988777666554

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.43  E-value=0.11  Score=40.26  Aligned_cols=52  Identities=15%  Similarity=0.152  Sum_probs=32.9

Q ss_pred             EEcCCChhHHHHHHHH----HHcC----CceEEEEcCCChh--------------------HHHHHHHHhCCCCccEEEe
Q 039225          168 FSRSNCRDCTAVRRFF----KQRG----LKFVEINVDVFPP--------------------REKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       168 Ysk~~Cp~C~~ak~iL----~elg----V~y~eiDVd~d~e--------------------~~~eL~~ltG~~tVPqIFI  219 (327)
                      |+.+||+.|......|    ++++    +.+..+.++.+.+                    ...++.+.++...+|++|+
T Consensus        33 Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~l  112 (144)
T d1o8xa_          33 FSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIG  112 (144)
T ss_dssp             EECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEE
T ss_pred             eccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCCCcCCEEEE
Confidence            7789999999876544    3432    3344455543311                    2235667778899999874

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.41  E-value=0.069  Score=40.99  Aligned_cols=55  Identities=16%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVF  218 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIF  218 (327)
                      -|+.|+.+|||.|++....|+++     ++.+..+....+....+......+...+|.++
T Consensus        28 vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~   87 (134)
T d1zzoa1          28 AVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (134)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             EEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEe
Confidence            35558899999999887666554     34455666554444333344444555566553

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=94.28  E-value=0.023  Score=41.29  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--h-hHHHHHHHHhCCCCccEEEe-CCEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--P-PREKELIRRTGSSQVPQVFL-NDKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~-e~~~eL~~ltG~~tVPqIFI-nGe~IGG~deL~~L~  234 (327)
                      .+|+.++.. +.+++-+|.+.|++|+.+.++..  . ...+++.+++-..+||++.+ ||..|.....+.+..
T Consensus         2 kLY~~p~s~-s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL   73 (80)
T d1f2ea2           2 KLFISPGAC-SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYI   73 (80)
T ss_dssp             EEEECTTST-THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             EEecCCCch-HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHHH
Confidence            378775432 47888899999999887776532  2 23356778888899999987 467777766665543

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.058  Score=38.99  Aligned_cols=68  Identities=13%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeC-CEEeechHHHHHh
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLN-DKLFGGLVALNSL  233 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L  233 (327)
                      |...++|+.+.| ....++.++++.+++|+.++..   ...+++.+++-..+||++..+ |..+-...-+...
T Consensus         1 Ms~~tLY~~~~~-rs~~~~~~l~~~~~d~~~~~~~---~~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~Y   69 (75)
T d1nhya2           1 MSQGTLYANFRI-RTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYY   69 (75)
T ss_dssp             CTTCEEECCSSH-HHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHH
T ss_pred             CCCeEEecCCCc-hHHHHHHHHHhcCccccccCcc---cCCHHHHHhCcCCCCCeEEeCCeeEecCHHHHHHH
Confidence            356789998764 5778889999999999877654   344578888999999999864 7777776666544

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.1  Score=40.20  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=24.4

Q ss_pred             EEcCCChhHHHHHHHHHH---cCCceEEEEcCCCh
Q 039225          168 FSRSNCRDCTAVRRFFKQ---RGLKFVEINVDVFP  199 (327)
Q Consensus       168 Ysk~~Cp~C~~ak~iL~e---lgV~y~eiDVd~d~  199 (327)
                      |+.+||+.|++....|++   .++.+.-++++.+.
T Consensus        27 FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~   61 (136)
T d1z5ye1          27 VWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDR   61 (136)
T ss_dssp             EECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCH
T ss_pred             EEcCcCCCcCccccchhhhhhhhhhhcccccccch
Confidence            789999999987766654   46777777777654

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.051  Score=43.81  Aligned_cols=56  Identities=14%  Similarity=0.199  Sum_probs=34.3

Q ss_pred             EEE-EEcCCChhHHHHHH-HHHHc------CCceEEEEcCCChhHHHHHHHHhCCCCccEE-EeC
Q 039225          165 ISF-FSRSNCRDCTAVRR-FFKQR------GLKFVEINVDVFPPREKELIRRTGSSQVPQV-FLN  220 (327)
Q Consensus       165 VvL-Ysk~~Cp~C~~ak~-iL~el------gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqI-FIn  220 (327)
                      |+| |+.+||++|++..+ +|..-      +-.|..+.++.+..--..+.+.++..++|.| ||+
T Consensus        45 llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~id  109 (147)
T d2dlxa1          45 LMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILD  109 (147)
T ss_dssp             EEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEEC
T ss_pred             EEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEe
Confidence            444 55689999987743 23211      1134444554444444567788899999987 554

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=93.75  E-value=0.018  Score=41.83  Aligned_cols=68  Identities=16%  Similarity=0.252  Sum_probs=47.6

Q ss_pred             EEEEcCCChhHHHHHHHHHHcCCceEEEEcCCC--hhH-HHHHHHHhCCCCccEEEeC-CEEeechHHHHHhh
Q 039225          166 SFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVF--PPR-EKELIRRTGSSQVPQVFLN-DKLFGGLVALNSLR  234 (327)
Q Consensus       166 vLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d--~e~-~~eL~~ltG~~tVPqIFIn-Ge~IGG~deL~~L~  234 (327)
                      .+|+.++- .+.+++-+|.++|++|+.+.|+..  .+. ..++.+++-..+||++.++ |..+-....|....
T Consensus         2 kLY~~p~s-~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL   73 (80)
T d1pmta2           2 KLYYTPGS-CSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYL   73 (80)
T ss_dssp             EEEECTTS-TTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             EEEeCCCC-hHHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHHH
Confidence            37877653 368999999999999887766542  222 2346777888999999875 56665555555443

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.67  E-value=0.076  Score=46.11  Aligned_cols=67  Identities=22%  Similarity=0.398  Sum_probs=43.2

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHHcC----CceEEEEcC-------CC----h---hHHHHHHHHhCCCC--ccEEEeCC
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQRG----LKFVEINVD-------VF----P---PREKELIRRTGSSQ--VPQVFLND  221 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~elg----V~y~eiDVd-------~d----~---e~~~eL~~ltG~~t--VPqIFInG  221 (327)
                      +.=|.+|+..||+.|-.|-++|.++.    +-.-.+-|+       .|    +   +.+..+....|.++  .||++|||
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vvnG   85 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAILNG   85 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEETT
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCCCCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEEeC
Confidence            34488999999999999999998872    222222222       12    2   23344555556544  59999999


Q ss_pred             E-EeechH
Q 039225          222 K-LFGGLV  228 (327)
Q Consensus       222 e-~IGG~d  228 (327)
                      + ...|.+
T Consensus        86 ~~~~~gs~   93 (225)
T d2axoa1          86 RDHVKGAD   93 (225)
T ss_dssp             TEEEETTC
T ss_pred             cccccccC
Confidence            6 455553

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=93.08  E-value=0.1  Score=40.68  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc------CCceEEEEcC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR------GLKFVEINVD  196 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el------gV~y~eiDVd  196 (327)
                      |+.|+.+||+.|.+....|+++      ++.+.-+++.
T Consensus        33 vl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~   70 (143)
T d2b5xa1          33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMP   70 (143)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred             EEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEee
Confidence            3347889999999876555433      3556556553

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.62  E-value=0.15  Score=40.10  Aligned_cols=60  Identities=22%  Similarity=0.489  Sum_probs=43.0

Q ss_pred             hhccCCcE--EEEEc-CCChhHHHHHHHHHHc-----CCceEEEEcCCChhHHHHHHHHhCCCCccEEEe
Q 039225          158 EEKIKGRI--SFFSR-SNCRDCTAVRRFFKQR-----GLKFVEINVDVFPPREKELIRRTGSSQVPQVFL  219 (327)
Q Consensus       158 ~~~~~~kV--vLYsk-~~Cp~C~~ak~iL~el-----gV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFI  219 (327)
                      .+.++++|  ++|.. ..|++|..++++|++.     .+.+++++.+.  ....++.+.+|...+|++.|
T Consensus        17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~--~e~~~~~~~~~ver~Ps~~i   84 (119)
T d1a8la1          17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDT--PEGKELAKRYRIDRAPATTI   84 (119)
T ss_dssp             GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTS--HHHHHHHHHTTCCSSSEEEE
T ss_pred             HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCc--chhhhHHHhhccccCceEEE
Confidence            34466655  45653 5899999999999987     45677777773  33346667788888998766

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=91.83  E-value=0.29  Score=37.84  Aligned_cols=35  Identities=17%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc----CCceEEEEcCCCh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR----GLKFVEINVDVFP  199 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el----gV~y~eiDVd~d~  199 (327)
                      |+.|+.+||+.|+.....|+++    ++.+.-+.++...
T Consensus        35 ll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~   73 (144)
T d1knga_          35 LVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAA   73 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCH
T ss_pred             EEEeeccccccccccCchhhhhhhccCceeEEEEeeech
Confidence            4448889999999888777765    4455556655543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.34  E-value=0.15  Score=39.12  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=34.1

Q ss_pred             cEEEEEcCCChhHHH-----HHHHHHHcC--CceEEEEcCCCh-hHHHHHHHHhCC--CCccEEEe
Q 039225          164 RISFFSRSNCRDCTA-----VRRFFKQRG--LKFVEINVDVFP-PREKELIRRTGS--SQVPQVFL  219 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~-----ak~iL~elg--V~y~eiDVd~d~-e~~~eL~~ltG~--~tVPqIFI  219 (327)
                      -+|.|+.+||++|++     +-+.+.+..  +.+-.+|++... ..-++|....+.  .++|+|++
T Consensus        22 ~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~~   87 (122)
T d2c0ga2          22 SVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFL   87 (122)
T ss_dssp             EEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEE
T ss_pred             EEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcEEE
Confidence            467799999999962     222333333  445677775422 223456666655  57999954

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=90.92  E-value=0.18  Score=38.87  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=15.7

Q ss_pred             CcEEEEEcCCChhHHHHHHHHHH
Q 039225          163 GRISFFSRSNCRDCTAVRRFFKQ  185 (327)
Q Consensus       163 ~kVvLYsk~~Cp~C~~ak~iL~e  185 (327)
                      .-|+.|+.+|||+|++....|++
T Consensus        25 ~vvl~F~a~wC~~C~~~~~~l~~   47 (143)
T d2fy6a1          25 PTLIKFWASWCPLCLSELGQTEK   47 (143)
T ss_dssp             CEEEEEECTTCHHHHTTHHHHHH
T ss_pred             EEEEEEECCCCccccccCcchhh
Confidence            33556888999999965444443

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=90.22  E-value=1.3  Score=35.17  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=21.2

Q ss_pred             EEEEEcCCChhHHHHHHHHHHc-------CCceEEEEcCC
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQR-------GLKFVEINVDV  197 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~el-------gV~y~eiDVd~  197 (327)
                      |+.|+.+||+.|......|+++       ++.+..+.++.
T Consensus        60 ll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~   99 (176)
T d1jfua_          60 LVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT   99 (176)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCC
T ss_pred             EEEeccCcccchHHHHHhhhhccccccccccccccccccc
Confidence            4447789999998776665543       33455566553

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=89.88  E-value=0.61  Score=33.12  Aligned_cols=68  Identities=10%  Similarity=-0.060  Sum_probs=46.7

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhH--HHH-HHHHhCCCCccEEEeCCEEeechHHHHHh
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPR--EKE-LIRRTGSSQVPQVFLNDKLFGGLVALNSL  233 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~--~~e-L~~ltG~~tVPqIFInGe~IGG~deL~~L  233 (327)
                      +..|+ +.=..+..+|-+|...|++|+++.++.....  .++ .+...-..++|.+..||..+.....+...
T Consensus         3 ~L~Y~-~~rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~ry   73 (80)
T d1duga2           3 ILGYW-KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (80)
T ss_dssp             EEEEE-SSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             EEEEc-CCchhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHHHH
Confidence            44555 4447888999999999999999988765321  111 11112357899999999887766666544

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.42  E-value=0.57  Score=35.67  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=24.9

Q ss_pred             cEEEEEcCCChhHHHHHHHHHH-------cCCceEEEEcCCCh
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQ-------RGLKFVEINVDVFP  199 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~e-------lgV~y~eiDVd~d~  199 (327)
                      -|+.|+.+||+.|.+....|++       .++.+.-++++.+.
T Consensus        28 ~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~   70 (137)
T d1st9a_          28 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESK   70 (137)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCH
T ss_pred             EEEEEeeccccceeecccccccccccccccccccccccccchh
Confidence            3556778999999877666653       35666777776554

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.23  E-value=0.06  Score=39.63  Aligned_cols=70  Identities=10%  Similarity=0.034  Sum_probs=49.2

Q ss_pred             cCCcEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHH--HHHHHHhCCCCccEEEeCC--EEeechHHH
Q 039225          161 IKGRISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPRE--KELIRRTGSSQVPQVFLND--KLFGGLVAL  230 (327)
Q Consensus       161 ~~~kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~--~eL~~ltG~~tVPqIFInG--e~IGG~deL  230 (327)
                      .+..++||+.+..+-+..++-+|...|++|+.+.++.....+  .+.++......+|.+.++|  ..|.-..-|
T Consensus         4 ~M~~~~L~Y~~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI   77 (87)
T d2fnoa2           4 GMNTFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAI   77 (87)
T ss_dssp             SCBSEEEECCSSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHH
T ss_pred             CCCCeEEEECCCCcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEecCCCeeeehHHHH
Confidence            356799999998889999999999999999987776322211  1233345678999999864  244444333

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=87.43  E-value=0.23  Score=35.47  Aligned_cols=68  Identities=13%  Similarity=-0.033  Sum_probs=45.1

Q ss_pred             EEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCCh--hHHHHHH-HHhCCCCccEEEeCCEEeechHHHHH
Q 039225          165 ISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFP--PREKELI-RRTGSSQVPQVFLNDKLFGGLVALNS  232 (327)
Q Consensus       165 VvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~--e~~~eL~-~ltG~~tVPqIFInGe~IGG~deL~~  232 (327)
                      ++|++.+.=..|..+|-+|...|++|+.+.++.+.  +..+... ...-..++|.+..+|..|....-+.+
T Consensus         2 ~~L~Y~~~rgrae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~~   72 (80)
T d1fhea2           2 AKLGYWKLRGLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMR   72 (80)
T ss_dssp             CEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHHH
T ss_pred             eEEEEcCCchHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHHHHH
Confidence            56655443367889999999999999999887642  2222111 12235789999988877665554443

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.11  Score=40.13  Aligned_cols=56  Identities=16%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCChhHHHHHHHHHH------cCCceEEEEcCCChhHHHHHHHH-hCCCCccEEEe
Q 039225          162 KGRISFFSRSNCRDCTAVRRFFKQ------RGLKFVEINVDVFPPREKELIRR-TGSSQVPQVFL  219 (327)
Q Consensus       162 ~~kVvLYsk~~Cp~C~~ak~iL~e------lgV~y~eiDVd~d~e~~~eL~~l-tG~~tVPqIFI  219 (327)
                      +.-++.|+.+||++|++....+.+      ....|..++|+.+.+  .++... .....+|++++
T Consensus        26 Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~~~~~~~Pt~~~   88 (135)
T d1sena_          26 LPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE--PKDEDFSPDGGYIPRILF   88 (135)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGS--CSCGGGCTTCSCSSEEEE
T ss_pred             CcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcC--HHHHHHHhhcccceeEEE
Confidence            334556889999999999876632      234566666654322  111111 12345787753

>d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]

Probab=81.90  E-value=0.61  Score=33.20  Aligned_cols=57  Identities=11%  Similarity=0.177  Sum_probs=41.4

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHcCCceEEEEcCCChhHHHHHHHHhCCCCccEEEeCCE
Q 039225          164 RISFFSRSNCRDCTAVRRFFKQRGLKFVEINVDVFPPREKELIRRTGSSQVPQVFLNDK  222 (327)
Q Consensus       164 kVvLYsk~~Cp~C~~ak~iL~elgV~y~eiDVd~d~e~~~eL~~ltG~~tVPqIFInGe  222 (327)
                      ++.||+.+.=..|..+|-+|...|++|+.+.++.+..  ...+.......+|...+.+.
T Consensus         2 ~~kL~Y~~~rgr~e~iR~lL~~~gv~ye~~~~~~~~~--~~~k~~~~~~~lP~~~~p~l   58 (81)
T d1oe8a2           2 HIKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDW--PKIKPTIPGGRLPAVKITDN   58 (81)
T ss_dssp             EEEEEESCTTSTTHHHHHHHHHTTCCCEEEECCTTTH--HHHGGGSTTSCSCEEEEECT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCCceeEeccchhh--HHhhhcccccCCCcccCCcc
Confidence            4778888877899999999999999999998875432  23333334456777766543

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.62  E-value=3.5  Score=31.71  Aligned_cols=72  Identities=13%  Similarity=0.340  Sum_probs=45.4

Q ss_pred             CcEEEEEcC-CChhHH------HHHHHHHHc--------CCceEEEEcCCChh----HHHHH-HHHh-CCCCccEEEeCC
Q 039225          163 GRISFFSRS-NCRDCT------AVRRFFKQR--------GLKFVEINVDVFPP----REKEL-IRRT-GSSQVPQVFLND  221 (327)
Q Consensus       163 ~kVvLYsk~-~Cp~C~------~ak~iL~el--------gV~y~eiDVd~d~e----~~~eL-~~lt-G~~tVPqIFInG  221 (327)
                      ..|++|... -|+.|.      ..-.||+..        ...|+.+||..+++    ..+++ .++. .-.-.|.|.+||
T Consensus         8 v~i~VYGA~~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYPlV~i~~   87 (111)
T d1xg8a_           8 NAVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMND   87 (111)
T ss_dssp             EEEEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEETT
T ss_pred             eEEEEEcccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceeeEEEECC
Confidence            358899874 577764      555666432        34688999976542    33333 3333 346689999999


Q ss_pred             EEee-chHHHHHhh
Q 039225          222 KLFG-GLVALNSLR  234 (327)
Q Consensus       222 e~IG-G~deL~~L~  234 (327)
                      +.|| |+-.|+...
T Consensus        88 eiVaEGnp~LK~I~  101 (111)
T d1xg8a_          88 EYVADGYIQTKQIT  101 (111)
T ss_dssp             EEEEESSCCHHHHH
T ss_pred             EEeecCCccHHHHH
Confidence            9997 665555544