Citrus Sinensis ID: 039239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLRLVPTSLN
Secondary Structure (PSIPRED)
cEEcccccccccccccccccccccEEEcccccccccccccccccHHHHHccccccccccccccccccccEEccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccHHHHcccHHHHHHHHcHHHHHHHHHHHHccccccccEEEEcccccccccccccccccEEEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHcccccccccccccEEEcccccHHccccccccHHHHHHHcccccHHccccHHHHHHHHcEEEcccccHHHHccHHHccHHHHHEEEccccccHccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccccccEEEccccHHHHcccHHHccHHHHHHHHHcccccHcccccccccccHEEEEEcccccccHHEcEcccccEEEEEcccccccccccccccccccEEEEEEEEcccccccEEEEEEEEEcccccccccccccccccHHHHHccEEEEEEccccccccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mldlsdckslkslpAEISNLESLKKlnlsgcsklkrlpefssagnieeicgckrlkslpssicklkslkvlnldgcsniqklphelgnlEALNSLYAKgiattevpsSVVRLNNKLYelssdrsrrgdkqmglLLPITlsidglhmtdlrhfdlsgnfkldrkEVRGIFEDALQDIQLMAAARWKQVREEgyflekcgyvifpgneipkwfkfqsvgssssitlemptplpgcfsnknrvlgFTFSAIVAFGEHRAFYLGkvqgrmprfiptdpnlvHHVAQLGKAQARMLKlvpiesnqaphaVHLGKALGRMLRLVPTSLN
Flexible Loop (DISEMBL)
mldlsdckslkslpaeisnleslkklnlsgCSKLkrlpefssagniEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIattevpssvvrlNNKLYelssdrsrrgdkqmGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLRLVPTSLN
Low Complexity Region (SEG)
MldlsdckslkslPAEIsnleslkklnlsGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLRLVPTSLN
Disordered region (IsUnstruct)
******************************C**LKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYE************MGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLR*******
Disordered Region (DISOPRED)
MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAA***************CGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLRLVPTSL*
Disordered Region (DISEMBL)
MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLRLVPTSLN
Disordered Region (DISPRO)
MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLRLVPTSL*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPNLVHHVAQLGKAQARMLKLVPIESNQAPHAVHLGKALGRMLRLVPTSLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.340	0.096	0.366	5e-13
Q9FKZ0	815	Probable disease resistan	no	no	0.343	0.136	0.338	6e-12
Q9FKZ1	809	Probable disease resistan	no	no	0.343	0.137	0.338	3e-11
Q9SZA7	816	Probable disease resistan	no	no	0.349	0.138	0.344	2e-10
Q9LVT1	623	Putative disease resistan	no	no	0.343	0.178	0.307	3e-10
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.383	0.065	0.355	7e-10
Q9LZ25	811	Probable disease resistan	no	no	0.349	0.139	0.293	7e-10
Q9FKZ2	415	Probable disease resistan	no	no	0.343	0.267	0.330	2e-08
Q9FL92	1372	Probable WRKY transcripti	no	no	0.315	0.074	0.342	5e-07
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.300	0.074	0.365	7e-07

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 29/139 (20%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS-----------SAGNIEEI- 49
           L L+DCKSLK  P    N+ESL+ L L  C  L++LPE                 I E+ 
Sbjct: 671 LYLNDCKSLKRFPC--VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELP 728

Query: 50  ---------------CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
                             K L +LPSSIC+LKSL  L++ GCS ++ LP E+G+L+ L  
Sbjct: 729 SSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRV 788

Query: 95  LYAKGIATTEVPSSVVRLN 113
             A        PSS++RLN
Sbjct: 789 FDASDTLILRPPSSIIRLN 807

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 7/118 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-----CGCKRLK 56
           +D+  C  L  LP  I  + SLK L+++ C+KL +LPE  + GN+  +     C C  L 
Sbjct: 660 IDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPE--AIGNLSRLEVLRMCSCMNLS 717

Query: 57  SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN 114
            LP +  +L +L+ L++  C  ++KLP E+G L+ L ++  +  +  E+P SV  L N
Sbjct: 718 ELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCSGCELPDSVRYLEN 775

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 7/118 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-----CGCKRLK 56
           +D+  C  L  LP  IS + SLK L+++ C+KL +LPE  + GN+  +     C    L 
Sbjct: 654 IDIDYCYDLDELPYWISEIVSLKTLSITNCNKLSQLPE--AIGNLSRLEVLRLCSSMNLS 711

Query: 57  SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN 114
            LP +   L +L+ L++  C  ++KLP E+G L+ L  +  +  +  E+P SV  L N
Sbjct: 712 ELPEATEGLSNLRFLDISHCLGLRKLPQEIGKLQNLKKISMRKCSGCELPESVTNLEN 769

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 3/116 (2%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS---AGNIEEICGCKRLKSL 58
           L +  C  L +LP+ I  L SL  L+++ C +L  LP+  S   A  I  +  C  LK+L
Sbjct: 661 LTIDHCDDLVALPSSICGLTSLSCLSITNCPRLGELPKNLSKLQALEILRLYACPELKTL 720

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN 114
           P  IC+L  LK L++  C ++  LP E+G L+ L  +  +    ++ PSS V L +
Sbjct: 721 PGEICELPGLKYLDISQCVSLSCLPEEIGKLKKLEKIDMRECCFSDRPSSAVSLKS 776

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 7   CKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS---AGNIEEICGCKRLKSLPSSIC 63
           C  L  LP+ I  + SL  ++++ C  +K LP+  S   A  +  +  C  LKSLP  IC
Sbjct: 473 CDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQALQLLRLYACPELKSLPVEIC 532

Query: 64  KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLY 117
           +L  L  +++  C ++  LP ++GN+  L  +  +  + + +PSS V L +  Y
Sbjct: 533 ELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDMRECSLSSIPSSAVSLTSLCY 586

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 25/149 (16%)

Query: 1    MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS--------SAGNIEEICGC 52
             L+L  C  L+++P+ + +LESL+ LNLSGCSKL   PE S            I+EI   
Sbjct: 1309 FLNLKGCSKLENIPSMV-DLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSS 1367

Query: 53   ---------------KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYA 97
                           + LK+LP+SI KLK L+ LNL GC ++++ P     ++ L  L  
Sbjct: 1368 IKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDL 1427

Query: 98   KGIATTEVPSSVVRLNNKLYELSSDRSRR 126
                  E+PSS+  L   L EL    SRR
Sbjct: 1428 SRTDIKELPSSISYL-TALDELLFVDSRR 1455

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS---AGNIEEICGCKRLKSL 58
           L +  C  L  LP+ I  + SL  ++++ C ++K LP+  S   A  +  +  C  L SL
Sbjct: 656 LTIDHCDDLLELPSTICGITSLNSISITNCPRIKELPKNLSKLKALQLLRLYACHELNSL 715

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN 114
           P  IC+L  LK +++  C ++  LP ++G ++ L  +  +  + + +P+SVV L +
Sbjct: 716 PVEICELPRLKYVDISQCVSLSSLPEKIGKVKTLEKIDTRECSLSSIPNSVVLLTS 771

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ2|DRL41_ARATH Probable disease resistance protein At5g66890 OS=Arabidopsis thaliana GN=At5g66890 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 7/118 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-----CGCKRLK 56
           +++  C +L  LP  IS + SLKKL+++ C+KL R+ E  + G++ ++       C  L 
Sbjct: 260 IEIDYCYNLDELPYWISQVVSLKKLSVTNCNKLCRVIE--AIGDLRDLETLRLSSCASLL 317

Query: 57  SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN 114
            LP +I +L +L+ L++ G   ++ LP E+G L+ L  +  K     E+P SV  L N
Sbjct: 318 ELPETIDRLDNLRFLDVSGGFQLKNLPLEIGKLKKLEKISMKDCYRCELPDSVKNLEN 375

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 6/108 (5%)

Query: 10  LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKS 67
           LK L     +LE LK + L    +L  + +   A N+E  ++ GC RL+S P++  +L  
Sbjct: 581 LKKLWGGTKDLEMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCTRLQSFPAT-GQLLH 639

Query: 68  LKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNK 115
           L+V+NL GC+ I+  P    N+E LN    +G    E+P S+V+ N +
Sbjct: 640 LRVVNLSGCTEIKSFPEIPPNIETLN---LQGTGIIELPLSIVKPNYR 684

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 26/123 (21%)

Query: 1   MLDLSDCKSLKSLPA------------EISNLE----------SLKKLNLSGCSKLKRLP 38
           +LD  DC  LKSLP+            + S LE          SLK++NL   + LK +P
Sbjct: 572 LLDWDDC-PLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIP 630

Query: 39  EFSSAGNIEEI--CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           + S A N+EE+   GCK L +LPSSI     L  L++  C  ++  P +L NLE+L  L 
Sbjct: 631 DLSLAINLEELDLVGCKSLVTLPSSIQNATKLIYLDMSDCKKLESFPTDL-NLESLEYLN 689

Query: 97  AKG 99
             G
Sbjct: 690 LTG 692

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
297804200	1046	predicted protein [Arabidopsis lyrata su	0.653	0.201	0.347	2e-18
359486073	1296	PREDICTED: TMV resistance protein N-like	0.458	0.114	0.406	7e-18
317415948	2048	nematode resistance-like protein [Prunus	0.643	0.101	0.317	1e-17
317415954	1625	nematode resistance-like protein [Prunus	0.653	0.129	0.320	1e-17
296081002	599	unnamed protein product [Vitis vinifera]	0.724	0.390	0.295	1e-17
359496026	1250	PREDICTED: TMV resistance protein N-like	0.349	0.090	0.45	2e-17
255563202	1158	leucine-rich repeat containing protein,	0.739	0.206	0.298	4e-17
359486075	1291	PREDICTED: TMV resistance protein N-like	0.458	0.114	0.401	4e-17
359493267	1417	PREDICTED: TMV resistance protein N-like	0.352	0.080	0.421	1e-16
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.458	0.104	0.395	2e-16

>gi|297804200|ref|XP_002869984.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315820|gb|EFH46243.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 117/253 (46%), Gaps = 42/253 (16%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS--------AGNIEEIC--- 50
           L+L DC SL+SLP  I NL+SLK L LSGCS L+     S            IE++    
Sbjct: 678 LNLRDCTSLESLPEGI-NLKSLKTLILSGCSNLQEFQIISDNIESLYLEGSAIEQVVEHI 736

Query: 51  ------------GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAK 98
                        C+RLK LP+ + KLKSL+ L L GCS ++ LP     +E L  L   
Sbjct: 737 ESLRNLILLNLKNCRRLKYLPNDLYKLKSLQELILSGCSALESLPPIKEEMECLEILLMD 796

Query: 99  GIATTEVPSSVVRLNNKLYEL--SSDRSRRG----DKQMGLLL-----PITLSI--DGLH 145
           G +  + P ++   N K++    SS     G    D    + L     P+TL +  D +H
Sbjct: 797 GTSIKQTPETICLSNLKMFSFCGSSIEDSTGLHYVDAHGCVSLEKVAEPVTLPLVTDRMH 856

Query: 146 MTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGN 205
            T    F  +  FKL+R E   I   A    QL+A     Q   +G  LE    V FPG+
Sbjct: 857 TT----FIFTNCFKLNRAEQEAIVAQAQLKSQLLARTSL-QHNNKGLVLEPLVAVCFPGS 911

Query: 206 EIPKWFKFQSVGS 218
           EIP WF  Q +GS
Sbjct: 912 EIPSWFSHQRMGS 924

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 95/177 (53%), Gaps = 29/177 (16%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS------------------ 42
           +L+L +CKSL+SLP+ I  L+SLK L LS CS+LK+LPE                     
Sbjct: 774 LLNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENMESLKELFLDDTGLREL 833

Query: 43  AGNIEEICG--------CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
             +IE + G        CKRL SLP S CKL SL+ L L GCS ++KLP ++G+L+ L  
Sbjct: 834 PSSIEHLNGLVLLKLKNCKRLASLPESFCKLTSLQTLTLSGCSELKKLPDDMGSLQCLLK 893

Query: 95  LYAKGIATTEVPSSVVRLNNKLYELSSDRSR-RGDKQMGLLLPITLS-IDGLHMTDL 149
           L A G    EVP+S+  L  KL  LS    +  G K   L L +  S  DGL ++ L
Sbjct: 894 LKANGSGIQEVPTSITLL-TKLQVLSLAGCKGGGSKSKNLALSLRASPTDGLRLSSL 949

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317415948|emb|CAR94514.1| nematode resistance-like protein [Prunus cerasifera]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 135/290 (46%), Gaps = 82/290 (28%)

Query: 1    MLDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE-----------FSSAGNIEE 48
            +L+L DCK+L SLP  I ++L SL+ LN+SGCS L  LPE           ++S   I+E
Sbjct: 736  LLNLRDCKNLLSLPDVICTSLTSLQILNVSGCSNLNELPENLGSLECLQELYASRTAIQE 795

Query: 49   ICG---------------CKRLKSLPSSIC-KLKSLKVLNLDGCSNIQKLPHELGNLEAL 92
            +                 CK L +LP  IC  L SL++LNL GCSN+ +LP  LG+LE L
Sbjct: 796  LPTSIKHLTDLTLLNLRECKNLLTLPDVICTNLTSLQILNLSGCSNLNELPENLGSLECL 855

Query: 93   NSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDL--- 149
              LYA G A +++P S+ +L ++L EL  D   +   Q    LP ++    +H   L   
Sbjct: 856  QELYASGTAISQIPESISQL-SQLGELVLDGCSK--LQSLPRLPFSIRAVSVHNCPLLQG 912

Query: 150  ----------------------RHFDLSGNFKLDRKEV-----RGIFEDALQDIQLMAAA 182
                                  RH D++  F L  K +     +  FEDA++        
Sbjct: 913  AHSNKITVWPSAAAGFSFLNRQRHDDIAQAFWLPDKHLLWPFYQTFFEDAIR-------- 964

Query: 183  RWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPG 232
                 R+E +   + GY     NEIP W   +S  + S+IT+ +P  + G
Sbjct: 965  -----RDERF---EYGYR---SNEIPAWLSRRS--TESTITIPLPHDVDG 1001

Source: Prunus cerasifera

Species: Prunus cerasifera

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317415954|emb|CAR94519.1| nematode resistance-like protein [Prunus cerasifera]

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 129/287 (44%), Gaps = 76/287 (26%)

Query: 1   MLDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE-FSSAGNIEEICG------- 51
           +L+L DCKSL SLP  I ++L SL+ LN+SGCS L  LPE   S   ++E+         
Sbjct: 734 LLNLRDCKSLLSLPDVICTSLTSLQILNVSGCSNLNELPENLGSLECLQELYASRTPIQV 793

Query: 52  ------------------CKRLKSLPSSIC-KLKSLKVLNLDGCSNIQKLPHELGNLEAL 92
                             CK L +LP  IC  L SL++LNL GCSN+ +LP  LG+LE+L
Sbjct: 794 LPTSSKHLTDLTLLNLRECKNLLTLPDVICTNLTSLQILNLSGCSNLNELPENLGSLESL 853

Query: 93  NSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLL--LPITLSIDGLHMTDL- 149
             LYA G A ++VP S+ +L ++L EL  D    G  ++  L  LP ++    +H   L 
Sbjct: 854 QELYASGTAISQVPESISQL-SQLEELVFD----GCSKLQSLPRLPFSIRAVSVHNCPLL 908

Query: 150 ------------------------RHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWK 185
                                   RH D++  F L  K +   F           A R  
Sbjct: 909 QGADSNKITVWPSAAAGFSFLNRQRHDDIAQAFWLPDKHLLWPFYQTF----FEGAIRRD 964

Query: 186 QVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPG 232
           +  E GY            NEIP W   +S  + S+IT+ +P  + G
Sbjct: 965 ERFEYGY----------RSNEIPAWLSRRS--TESTITIPLPHDVDG 999

Source: Prunus cerasifera

Species: Prunus cerasifera

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081002|emb|CBI18506.3| unnamed protein product [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 137/315 (43%), Gaps = 81/315 (25%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS------------------ 42
           +LDL +CK LKSLP+ I  L+SL+ L LS CSKL+  PE                     
Sbjct: 160 LLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQL 219

Query: 43  AGNIEEICG--------CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
             +IE + G        CK L +LP SI  LKSL+ L + GCS +Q+LP  LG+L+ L  
Sbjct: 220 HPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVK 279

Query: 95  LYAKGIATTEVPSSVVRLN-----NKLYELSSDRSR------------RGDKQMGLLLPI 137
           L A G    + PSS+V L      N  + L +  S+            +   Q+  L   
Sbjct: 280 LQADGTLVRQPPSSIVLLRNLEILNNFFSLPAGISKLSKLRFLSLNHCKSLLQIPELPSS 339

Query: 138 TLSIDGLHMTDLRH------------------FDLSGNFKLDRKEVRGIFEDALQDIQLM 179
            + ++  + + L                    F L   F LD +           D+ ++
Sbjct: 340 IIEVNAQYCSSLNTILTPSSVCNNQPVCRWLVFTLPNCFNLDAE------NPCSNDMAII 393

Query: 180 AAARWKQVREEGYFLEKCGYVIF-PGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKN 238
           +       R +  FL   G+ IF PG+EIP W   Q++G  S +T+E+P   P  F  ++
Sbjct: 394 SP------RMQINFLPDFGFSIFLPGSEIPDWISNQNLG--SEVTIELP---PHWF--ES 440

Query: 239 RVLGFTFSAIVAFGE 253
             LGF    + AF +
Sbjct: 441 NFLGFAVCCVFAFED 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 75/140 (53%), Gaps = 27/140 (19%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-----------FSSAGNIEEI 49
            L+L DCK+L+  P+ I  LESLK L LSGCSKL   PE           F     I+E+
Sbjct: 701 FLNLKDCKNLQCFPSSIE-LESLKVLILSGCSKLDNFPEILENMEGLRELFLDGTAIKEL 759

Query: 50  C---------------GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
                            C+RL +LPSSIC LKSL  L L GCS ++KLP  LGNLE L  
Sbjct: 760 PLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCSQLEKLPENLGNLECLVE 819

Query: 95  LYAKGIATTEVPSSVVRLNN 114
           L A G A  + PSS+V L N
Sbjct: 820 LVADGSAVIQPPSSIVLLRN 839

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 129/302 (42%), Gaps = 63/302 (20%)

Query: 1    MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN------IEEICGCKR 54
            +L++ +C  L+ +P+ I  L+SL  L LSGC KL+  PE     N      ++E      
Sbjct: 748  VLNMKNCNELECIPSTIFKLKSLGVLILSGCKKLESFPEILETTNHLQHLSLDETA---- 803

Query: 55   LKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP------SS 108
            + +LP + C LK+L +LN   CS + KLP  + NL++L  L A G   + +P      SS
Sbjct: 804  MVNLPDTFCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRAGGCNLSTLPADLKYLSS 863

Query: 109  VVRLNNKLYELSSDRSRRGDKQMGLLLPITL----------------------------S 140
            +V LN  L   + D    G  Q+  L  I +                            S
Sbjct: 864  IVELN--LSGSNFDTMPAGINQLSKLRWINVTGCKRLQSLPELPPRIRYLNARDCRSLVS 921

Query: 141  IDGL---------HMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMAAARWKQVREEG 191
            I GL         +  D   F  +  FKLD+     I   A   IQ  A  R    RE  
Sbjct: 922  ISGLKQLFELGCSNSLDDETFVFTNCFKLDQDNWADILASAQLKIQHFAMGRKHYDRE-- 979

Query: 192  YFLEKCGYVIFPGNEIPKWFKFQSVGSSSSITLEMPTPLPGCFSNKNRVLGFTFSAIVAF 251
             + E      +PG EIP+WF  +S+GSS +I    P  L       +R LGF+   +VAF
Sbjct: 980  LYDETFICFTYPGTEIPEWFADKSIGSSVTIQHLPPDWL------NHRFLGFSVCLVVAF 1033

Query: 252  GE 253
             +
Sbjct: 1034 DD 1035

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 93/177 (52%), Gaps = 29/177 (16%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS------------------ 42
           + +L +CKSL+SLP  I  L+SLK L LS C +LK+LPE                     
Sbjct: 769 LFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLREL 828

Query: 43  AGNIEEICG--------CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
             +IE + G        CKRL SLP SICKL SL+ L L GCS ++KLP ++G+L+ L  
Sbjct: 829 PSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLLK 888

Query: 95  LYAKGIATTEVPSSVVRLNNKLYELSSDRSR-RGDKQMGLLLPITLS-IDGLHMTDL 149
           L A G    EVPSS+  L  +L  LS    +  G K   L L +  S  DGL ++ L
Sbjct: 889 LKANGSGIQEVPSSITLL-TRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLRLSSL 944

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493267|ref|XP_002271591.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 76/140 (54%), Gaps = 26/140 (18%)

Query: 1    MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEF-SSAGNIEEIC--------- 50
            +LDL  CK+LKSLPA I  LESL+ L LSGCSKL+  PE      N++E+          
Sbjct: 884  ILDLKRCKNLKSLPASICKLESLEYLFLSGCSKLENFPEMMEDMENLKELLLDGTSIEGL 943

Query: 51   ----------------GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
                             CK L SLP  +CKL SL+ L + GCS +  LP  LG+L+ L  
Sbjct: 944  PLSIDRLKGLVLLNLRNCKNLVSLPKGMCKLTSLETLIVSGCSLLNNLPRNLGSLQRLVQ 1003

Query: 95   LYAKGIATTEVPSSVVRLNN 114
            L+A+G A T+ P S+V L N
Sbjct: 1004 LHAEGTAITQPPDSIVLLRN 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 92/177 (51%), Gaps = 29/177 (16%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS------------------ 42
           + +L +CKSL+SLP     L+SLK L LS C +LK+LPE                     
Sbjct: 742 LFNLEECKSLESLPGCXFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLREL 801

Query: 43  AGNIEEICG--------CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
             +IE + G        CKRL SLP SICKL SL+ L L GCS ++KLP ++G+L+ L  
Sbjct: 802 PSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLLK 861

Query: 95  LYAKGIATTEVPSSVVRLNNKLYELSSDRSR-RGDKQMGLLLPITLS-IDGLHMTDL 149
           L A G    EVPSS+  L  +L  LS    +  G K   L L +  S  DGL ++ L
Sbjct: 862 LKANGSGIQEVPSSITLL-TRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLRLSSL 917

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.188	0.049	0.484	2.4e-08
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.582	0.161	0.311	9.2e-08
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.294	0.083	0.407	1.9e-07
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.560	0.179	0.268	2.2e-07
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.318	0.086	0.357	3.4e-07
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.281	0.045	0.377	6.2e-07
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.349	0.094	0.370	9.7e-07
TAIR|locus:2146228	1245	AT5G18350 [Arabidopsis thalian	0.260	0.067	0.380	1.3e-06
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.244	0.066	0.373	1.5e-06
TAIR|locus:2174944	815	AT5G66910 [Arabidopsis thalian	0.253	0.100	0.337	2.8e-06

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query:    34 LKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEA 91
             LK +P+ S A N+EE  +C CK L +LPSS+  L  L+VL +  CSN++ LP +L NLE+
Sbjct:   637 LKEIPDLSYAVNLEEMDLCSCKSLVTLPSSVRNLDKLRVLRMSSCSNVEVLPTDL-NLES 695

Query:    92 LNSL 95
             L+ L
Sbjct:   696 LDLL 699

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 9.2e-08, P = 9.2e-08
 Identities = 66/212 (31%), Positives = 94/212 (44%)

Query:    52 CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP--SSV 109
             C+ L  LP    KLK L+ L   GC  +  LP  + N++ L  L   G A T++P  SS+
Sbjct:   788 CEMLVKLPEEFDKLKVLQELVCSGCKRLSSLPDVMKNMQCLQILLLDGTAITKIPHISSL 847

Query:   110 VRL----NNKLYELSSD-RSRRGDKQMGLLLPITL-SIDGLHMTDLRHFDLSGNFKLDRK 163
              RL    N K+  LS+D R     K + L     L SI  L  T+L+  D +G   L   
Sbjct:   848 ERLCLSRNEKISCLSNDIRLLSQLKWLDLKYCTKLVSIPELP-TNLQCLDANGCESLTT- 905

Query:   164 EVRGIFEDALQDIQLMAAA------RWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVG 217
              V       L   Q+ +        +  +  +EG+  E      FPG E+P WF  ++VG
Sbjct:   906 -VANPLATHLPTEQIHSTFIFTNCDKLDRTAKEGFVPEALFSTCFPGCEVPSWFCHEAVG 964

Query:   218 SSSSITLEMPTPLPGCFSNKNRVLGFTFSAIV 249
             S   + L     LP    N+NR +G    A+V
Sbjct:   965 SVLKLNL-----LPHW--NENRFVGIALCAVV 989

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 42/103 (40%), Positives = 57/103 (55%)

Query:    53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRL 112
             K L +LPSSIC+LKSL  L++ GCS ++ LP E+G+L+ L    A        PSS++RL
Sbjct:   747 KNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRL 806

Query:   113 NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155
             N KL  L      RG K  G+        +GLH   L + +LS
Sbjct:   807 N-KLIILMF----RGFKD-GVHFEFPPVAEGLH--SLEYLNLS 841

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 54/201 (26%), Positives = 93/201 (46%)

Query:    30 GCSKLKRLPEFSSAGNIEEIC--GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELG 87
             G  KLK +P+ S A N+E +    C  L  LPSSI  L  L  L + GC  ++ LP ++ 
Sbjct:   643 GSKKLKEIPDLSLATNLETLYLNDCSSLVELPSSIKNLNKLWDLGMKGCEKLELLPTDIN 702

Query:    88 NLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMT 147
                 L SLY   +       S   +++ + EL  +R+    +++   +     +  L M 
Sbjct:   703 ----LKSLYRLDLGRCSRLKSFPDISSNISELYLNRT--AIEEVPWWIQKFSRLKRLRMR 756

Query:   148 DLRHFD-LSGNF-KLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGN 205
             + +    +S N  KL   E+   F + +   +  A  + + V +         Y+IFPG 
Sbjct:   757 ECKKLKCISPNISKLKHLEMLD-FSNCIATTEEEALVQQQSVLK---------YLIFPGG 806

Query:   206 EIPKWFKFQSVGSSSSITLEM 226
             ++P +F +Q+ GSS +I L +
Sbjct:   807 QVPLYFTYQATGSSLAIPLSL 827

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 40/112 (35%), Positives = 57/112 (50%)

Query:    14 PAEIXXXXXXXXXXXXGCSKLKRLPEFSSAGNIEEICG-----CKRLKSLPSSICKLKSL 68
             P+ I             CS L +LP  SS GN+  +       C  L  LPSS   + SL
Sbjct:   697 PSSIGNATNLLELDLIDCSSLVKLP--SSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSL 754

Query:    69 KVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT-TEVPSSVVRLNNKLYEL 119
             K LNL GCS++ ++P  +GN+  L  +YA G ++  ++PSS+   N  L EL
Sbjct:   755 KELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGN-NTNLKEL 805

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 6.2e-07, P = 6.2e-07
 Identities = 37/98 (37%), Positives = 60/98 (61%)

Query:    34 LKRLPEFSSAGNIEEI--CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEA 91
             LK LP+FS+A N++ +  CGC  L  LP SI    +L+ L+L  C+++ +LP  +GNL  
Sbjct:  1880 LKELPDFSTATNLQTLILCGCSSLVELPYSIGSANNLQKLHLCRCTSLVELPASIGNLHK 1939

Query:    92 LNSLYAKGIATTEV-PSSV-VRLNNKLYELSSDRSRRG 127
             L ++  KG +  EV P+++ + L+ K Y+   +R  RG
Sbjct:  1940 LQNVTLKGCSKLEVVPTNINLILDVKKYK---NRENRG 1974

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 9.7e-07, P = 9.7e-07
 Identities = 47/127 (37%), Positives = 70/127 (55%)

Query:    32 SKLKRLPEFSSAGNIEEIC--GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNL 89
             S LK LP  S+A N+EE+    C  L  LPSSI KL SL++L+L+ CS+++KLP  + N 
Sbjct:   725 SYLKELPNLSTATNLEELKLRNCSSLVELPSSIEKLTSLQILDLENCSSLEKLP-AIENA 783

Query:    90 EALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTD 148
               L  L  +  ++  E+P S+    N L +L+      G   + + LP ++      +TD
Sbjct:   784 TKLRELKLQNCSSLIELPLSIGTATN-LKQLNIS----GCSSL-VKLPSSIG----DITD 833

Query:   149 LRHFDLS 155
             L  FDLS
Sbjct:   834 LEVFDLS 840

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2146228 AT5G18350 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 35/92 (38%), Positives = 52/92 (56%)

Query:    34 LKRLPEFSSAGNIEEI--CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELG---N 88
             LK +P+ S+A N+EE+    C  L  L  SI K  +LK L L  CS ++KLP  +G   N
Sbjct:   658 LKEIPDLSNATNLEELDLSSCSGLLELTDSIGKATNLKRLKLACCSLLKKLPSSIGDATN 717

Query:    89 LEALNSLYAKGIATTEVPSSVVRLNN-KLYEL 119
             L+ L+  + +     E+P S+ +L N K+ EL
Sbjct:   718 LQVLDLFHCESFE--ELPKSIGKLTNLKVLEL 747

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 31/83 (37%), Positives = 46/83 (55%)

Query:    31 CSKLKRLPE-FSSAGNIEEIC--GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELG 87
             C+KL  LP    +A N++ +    C  L  LPSSI    +L  +NL  CSN+ +LP  +G
Sbjct:   828 CAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIG 887

Query:    88 NLEALNSLYAKGIATTE-VPSSV 109
             NL+ L  L  KG +  E +P ++
Sbjct:   888 NLQKLQELILKGCSKLEDLPINI 910

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174944 AT5G66910 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 30/89 (33%), Positives = 50/89 (56%)

Query:    31 CSKLKRLPEFSSAGNIEEI-----CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHE 85
             C+KL +LPE  + GN+  +     C C  L  LP +  +L +L+ L++  C  ++KLP E
Sbjct:   689 CNKLSQLPE--AIGNLSRLEVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQE 746

Query:    86 LGNLEALNSLYAKGIATTEVPSSVVRLNN 114
             +G L+ L ++  +  +  E+P SV  L N
Sbjct:   747 IGKLQKLENISMRKCSGCELPDSVRYLEN 775

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-10
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-05
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	7e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 59.9 bits (145), Expect = 6e-10
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 50/238 (21%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L++ +C +L++LP  I NLESL+ L+LSGCS+L+  P+ S+  NI ++      ++ +P 
Sbjct: 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST--NISDLNLSRTGIEEVPW 863

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELS 120
            I K  +L  L+++GC+N+Q++   +  L+ L          T   S    L    +  S
Sbjct: 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE---------TVDFSDCGALTEASWNGS 914

Query: 121 SDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFEDALQDIQLMA 180
                     +   LP T+ I           +    F LD++ +               
Sbjct: 915 PSEVAMATDNIHSKLPSTVCI-----------NFINCFNLDQEAL--------------- 948

Query: 181 AARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSS-SSITLEMPTPLPGCFSNK 237
                 ++++  F      +I  G E+P +F  ++ G+S ++I L   +P    F  +
Sbjct: 949 ------LQQQSIFK----QLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFR 996

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 27/119 (22%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           L LSDC SL  LP+ I  L  L+ L++S                      C+ L+ LP+ 
Sbjct: 662 LKLSDCSSLVELPSSIQYLNKLEDLDMS---------------------RCENLEILPTG 700

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELS 120
           I  LKSL  LNL GCS ++  P    N   ++ L     A  E PS+ +RL N L EL 
Sbjct: 701 I-NLKSLYRLNLSGCSRLKSFPDISTN---ISWLDLDETAIEEFPSN-LRLEN-LDELI 753

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 4/116 (3%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSG--CSKLKRLPEFSSAGNIEEICGCKRLKSL 58
            LDL+    L+S  +E+  L +L  L+L     + +  L     +   E      +++SL
Sbjct: 97  SLDLNL-NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL 155

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN 114
           PS +  L +LK L+L    ++  LP  L NL  LN+L   G   +++P  +  L+ 
Sbjct: 156 PSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA 210

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 35/190 (18%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           LDLSD   ++SLP+ + NL +LK L+LS                         L  LP  
Sbjct: 145 LDLSD-NKIESLPSPLRNLPNLKNLDLSFN----------------------DLSDLPKL 181

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSV-VRLNNKLYELS 120
           +  L +L  L+L G + I  LP E+  L AL  L     +  E+ SS+    N    ELS
Sbjct: 182 LSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELS 240

Query: 121 SDRSRRGDKQMGLLLPITL---------SIDGLH-MTDLRHFDLSGNFKLDRKEVRGIFE 170
           +++     + +G L  +           SI  L  +T+LR  DLSGN   +   +  +  
Sbjct: 241 NNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Query: 171 DALQDIQLMA 180
             L+ +  + 
Sbjct: 301 LLLELLLNLL 310

Length = 394

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 24/104 (23%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEIC-GCKRLKSLPS 60
           + + +C +L +LP  I   E L+KL +  C ++  LPE  S  ++E        +K++P+
Sbjct: 77  ITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE--SVRSLEIKGSATDSIKNVPN 132

Query: 61  SICKLK------------------SLKVLNLDGCSNIQKLPHEL 86
            +  L                   SLK L+L GCSNI  LP +L
Sbjct: 133 GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKL 175

Length = 426

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 13  LPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI----CGCKRLK-SLPSSICKLKS 67
           +P +IS L  L+ +NLSG S    +P   S G+I  +            S+P S+ +L S
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIP--PSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 68  LKVLNLDGCSNIQKLPHELG 87
           L++LNL+G S   ++P  LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-----CGCKRLK 56
           LDLS+      +P +I +  SLK L+L G   + ++P  +S  N+  +        + + 
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVG 202

Query: 57  SLPSSICKLKSLKVLNLDGCSNIQ-KLPHELGNLEALNSL-YAKGIATTEVPSSVVRLNN 114
            +P  + ++KSLK + L G +N+  ++P+E+G L +LN L       T  +PSS+  L N
Sbjct: 203 QIPRELGQMKSLKWIYL-GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261

Query: 115 KLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNF 158
             Y            Q  L  PI  SI  L    L   DLS N 
Sbjct: 262 LQYLFLY--------QNKLSGPIPPSIFSL--QKLISLDLSDNS 295

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.67
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.36
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.34
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.31
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.18
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.16
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.05
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.04
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.99
PLN03150	623	hypothetical protein; Provisional	98.95
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.89
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.84
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.8
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.56
PLN03150	623	hypothetical protein; Provisional	98.53
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.28
PRK15386	426	type III secretion protein GogB; Provisional	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.15
PRK15386	426	type III secretion protein GogB; Provisional	98.09
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.08
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.46
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.23
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.0
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.68
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.04
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.82
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.7
smart00370	26	LRR Leucine-rich repeats, outliers.	93.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.91
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.74

>PLN03210 Resistant to P

Probab=99.86  E-value=3.2e-21  Score=206.62  Aligned_cols=75  Identities=20%  Similarity=0.213  Sum_probs=56.7

Q ss_pred             ceeEeCCCCCCCcceeccccCCeeE-EeecCCCCCCCCCCCCCceeeEEEEEEEeecCccccccccccccCCcccCCCCC
Q 039239          197 CGYVIFPGNEIPKWFKFQSVGSSSS-ITLEMPTPLPGCFSNKNRVLGFTFSAIVAFGEHRAFYLGKVQGRMPRFIPTDPN  275 (323)
Q Consensus       197 ~~~~~~pg~~iP~wf~~~~~g~sl~-i~~~lp~~~~~~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~n  275 (323)
                      +..+++||.++|+||+|+..|.+++ |+  +|+   .|+  ...+.||++|+|+++.....-.+....+..+++++..+|
T Consensus       955 ~~~~~l~g~evp~~f~hr~~g~sl~~i~--l~~---~~~--~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~ 1027 (1153)
T PLN03210        955 FKQLILSGEEVPSYFTHRTTGASLTNIP--LLH---ISP--CQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGN 1027 (1153)
T ss_pred             ceEEECCCccCchhccCCcccceeeeec--cCC---ccc--CCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCC
Confidence            4467999999999999999999998 99  888   898  788999999999987765432222223445556655555


Q ss_pred             chh
Q 039239          276 LVH  278 (323)
Q Consensus       276 ~~~  278 (323)
                      .++
T Consensus      1028 ~~~ 1030 (1153)
T PLN03210       1028 HFD 1030 (1153)
T ss_pred             ccc
Confidence            444

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.67  E-value=7.8e-17  Score=170.72  Aligned_cols=167  Identities=23%  Similarity=0.293  Sum_probs=86.9

Q ss_pred             EEecCCCCCCcCCcccC-CCCCCCEEeeeCCCCCccCCC-CcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEIS-NLESLKKLNLSGCSKLKRLPE-FSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~-~L~~L~~L~Ls~c~~l~~~p~-~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |+|++|++.+.+|..+. .+++|++|+|++|...+.+|. ....+...++++|...+.+|..++++++|++|++++|.+.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~  177 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV  177 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence            34444444444443332 344444444444444444432 1112222233444333455556666666666666666666


Q ss_pred             CCCCcccCCCcccceeecccccc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           80 QKLPHELGNLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      +.+|..++++++|++|++++|.+ +.+|..++.++ +|+.|+++ +|.       +.. .+|..++++++|++|++++| 
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~-~n~-------l~~-~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLG-YNN-------LSG-EIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC-CccEEECc-CCc-------cCC-cCChhHhcCCCCCEEECcCce
Confidence            66666666666666666666665 34566666666 66666666 544       221 12456677777777777777 


Q ss_pred             c--ccCccccccccchhhhhhhhhhh
Q 039239          158 F--KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 l--~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      +  .+| ..+..+  ++|+.+++..|
T Consensus       248 l~~~~p-~~l~~l--~~L~~L~L~~n  270 (968)
T PLN00113        248 LTGPIP-SSLGNL--KNLQYLFLYQN  270 (968)
T ss_pred             eccccC-hhHhCC--CCCCEEECcCC
Confidence            5  344 344444  45555554444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=8e-17  Score=170.65  Aligned_cols=118  Identities=25%  Similarity=0.371  Sum_probs=55.6

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |+|++|.+.+.+|.  +.+++|++|+|++|...+.+|..++.+.   ..++++|...+.+|..++++++|++|++++|.+
T Consensus       123 L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  200 (968)
T PLN00113        123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL  200 (968)
T ss_pred             EECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence            45555555444443  2345555555555544444444333322   222334333344444455555555555555544


Q ss_pred             CCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEcc
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~  122 (323)
                      .+.+|..++++++|++|++++|.+. .+|..++.++ +|++|+++
T Consensus       201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~  244 (968)
T PLN00113        201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-SLNHLDLV  244 (968)
T ss_pred             cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC-CCCEEECc
Confidence            4445555555555555555555442 3444444444 45555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=1.6e-17  Score=137.46  Aligned_cols=155  Identities=29%  Similarity=0.394  Sum_probs=131.5

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |.|++|+ +..+|+.|..+.+|+.|++.+ +.++++|..++.+. ++.+. +.+.+..+|.+|+.++.|++||+.+|+..
T Consensus        38 LtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   38 LTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             hhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc
Confidence            5688988 667787899999999999998 56778887766655 44443 56778889999999999999999998876


Q ss_pred             C-CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           80 Q-KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        80 ~-~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      + .+|..|..|+.|+.|++++|.+..+|..+++++ +|+.|.+. .|.       +.++  |.+++.++.|++|++.+| 
T Consensus       116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt-~lqil~lr-dnd-------ll~l--pkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLT-NLQILSLR-DND-------LLSL--PKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhc-ceeEEeec-cCc-------hhhC--cHHHHHHHHHHHHhcccce
Confidence            4 688889999999999999999999999999999 99999998 777       6655  899999999999999999 


Q ss_pred             c-ccCccccccccc
Q 039239          158 F-KLDRKEVRGIFE  170 (323)
Q Consensus       158 l-~lP~~~L~~L~~  170 (323)
                      + .+| +.+..++.
T Consensus       185 l~vlp-pel~~l~l  197 (264)
T KOG0617|consen  185 LTVLP-PELANLDL  197 (264)
T ss_pred             eeecC-hhhhhhhh
Confidence            8 777 56666655

>PLN03210 Resistant to P

Probab=99.43  E-value=2.6e-13  Score=146.00  Aligned_cols=168  Identities=30%  Similarity=0.457  Sum_probs=81.1

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |+|++|..++.+|. ++.+++|+.|+|++|..+..+|..++.+.   ..++++|++++.+|..+ ++++|+.|++++|..
T Consensus       639 L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        639 IDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             EECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCC
Confidence            34444444444443 44444555555555544444444433322   22334455555555443 445555555555544


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCC--------------CCcceec------
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQM--------------GLLLPIT------  138 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~--------------~~L~~l~------  138 (323)
                      ++.+|+.   ..+|++|++++|.++++|..+ .++ +|+.|.+. ++......              ..|+.++      
T Consensus       717 L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~-~L~~L~l~-~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~  790 (1153)
T PLN03210        717 LKSFPDI---STNISWLDLDETAIEEFPSNL-RLE-NLDELILC-EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS  790 (1153)
T ss_pred             ccccccc---cCCcCeeecCCCccccccccc-ccc-cccccccc-ccchhhccccccccchhhhhccccchheeCCCCCC
Confidence            4444432   234555666666666666543 233 44444444 32110000              0012221      


Q ss_pred             ---CccccccCCCCCeecCCCC--c-ccCccccccccchhhhhhhhhhh
Q 039239          139 ---LSIDGLHMTDLRHFDLSGN--F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       139 ---L~~~l~~l~~L~~L~Ls~N--l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                         +|..++++++|+.|++++|  + .+|...  .+  .+|+.+++..+
T Consensus       791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L--~sL~~L~Ls~c  835 (1153)
T PLN03210        791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI--NL--ESLESLDLSGC  835 (1153)
T ss_pred             ccccChhhhCCCCCCEEECCCCCCcCeeCCCC--Cc--cccCEEECCCC
Confidence               3566788889999999988  6 777321  12  44555555444

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.36  E-value=6.2e-14  Score=135.58  Aligned_cols=142  Identities=26%  Similarity=0.368  Sum_probs=67.3

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCC----CccCCCCcCCcchhhhcC-ccccccccccccCCCCCCEEEeeCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSK----LKRLPEFSSAGNIEEICG-CKRLKSLPSSICKLKSLKVLNLDGC   76 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~----l~~~p~~~~~l~l~~L~~-~~~l~~lP~~i~~L~~L~~L~Ls~n   76 (323)
                      ||||+|+ +..+|+.+.+|..|+.|+|++|..    +..+|...+ +..+.+++ ...+..+|.++..|.+|..+|+|.|
T Consensus       155 LDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  155 LDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            4555554 455555555555555555555432    122232110 00111111 1112234555555555555555543


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      + +..+|+.+.++.+|+.|+|++|.|+++--.++... +|+.|+++ .|.       |+.+  |.++.++++|+.|++.+
T Consensus       233 ~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~-~lEtLNlS-rNQ-------Lt~L--P~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  233 N-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE-NLETLNLS-RNQ-------LTVL--PDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             C-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHh-hhhhhccc-cch-------hccc--hHHHhhhHHHHHHHhcc
Confidence            2 34455555555555555555555555444444444 55555555 444       4444  55555666666666666


Q ss_pred             C
Q 039239          157 N  157 (323)
Q Consensus       157 N  157 (323)
                      |
T Consensus       301 N  301 (1255)
T KOG0444|consen  301 N  301 (1255)
T ss_pred             C
Confidence            6

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.34  E-value=1.6e-13  Score=132.82  Aligned_cols=147  Identities=23%  Similarity=0.362  Sum_probs=108.3

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcc---hhhhcCccccccccccccCCCCCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n   76 (323)
                      +||||+|+ +++.|..+.+.+++-.|+||+ +.+..+|... -++.   +++|++ +.++.+|+.+.+|..|++|+|++|
T Consensus       107 ~lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  107 ILDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCC
Confidence            36778877 677787777778888888887 4566666532 2222   344554 678899998888888888888887


Q ss_pred             CCC-------------------------CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCC
Q 039239           77 SNI-------------------------QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        77 ~~~-------------------------~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~  131 (323)
                      .+.                         ..+|.++..|.+|..+|++.|.+..+|+.+..+. +|+.|+++ +|+     
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~-~LrrLNLS-~N~-----  256 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR-NLRRLNLS-GNK-----  256 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh-hhheeccC-cCc-----
Confidence            643                         2345566677778888888888888888888888 88888888 787     


Q ss_pred             CCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239          132 GLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                        ++.++  ...+...+|+.|++|.| + .+|
T Consensus       257 --iteL~--~~~~~W~~lEtLNlSrNQLt~LP  284 (1255)
T KOG0444|consen  257 --ITELN--MTEGEWENLETLNLSRNQLTVLP  284 (1255)
T ss_pred             --eeeee--ccHHHHhhhhhhccccchhccch
Confidence              77773  44567788999999999 8 888

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.31  E-value=2.2e-13  Score=112.95  Aligned_cols=154  Identities=23%  Similarity=0.370  Sum_probs=119.1

Q ss_pred             CcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCCCCCCCcccCC
Q 039239           11 KSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGN   88 (323)
Q Consensus        11 ~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~   88 (323)
                      ..+|. +.++++.+.|.|++|. +..+|+.+..+. ++.+. .++.++++|.+|+.+++|+.|+++-| .+..+|.+|+.
T Consensus        24 ~~~~g-Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPG-LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGS  100 (264)
T ss_pred             hhccc-ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCC
Confidence            35665 5569999999999954 555555444433 44443 34778999999999999999999885 46788999999


Q ss_pred             Ccccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccc
Q 039239           89 LEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKE  164 (323)
Q Consensus        89 l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~  164 (323)
                      ++.|+.||+.+|++.  .+|..++.+. .|+.|.++ +|.       .+.+  |.+++++++|+.|.+..| + ++| ..
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~-tlralyl~-dnd-------fe~l--p~dvg~lt~lqil~lrdndll~lp-ke  168 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMT-TLRALYLG-DND-------FEIL--PPDVGKLTNLQILSLRDNDLLSLP-KE  168 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHH-HHHHHHhc-CCC-------cccC--ChhhhhhcceeEEeeccCchhhCc-HH
Confidence            999999999999984  6899999998 99999998 887       5666  889999999999999999 7 998 44


Q ss_pred             cccccchhhhhhhhhhh
Q 039239          165 VRGIFEDALQDIQLMAA  181 (323)
Q Consensus       165 L~~L~~~sL~~l~l~~n  181 (323)
                      +..|  +.|+.+.+..|
T Consensus       169 ig~l--t~lrelhiqgn  183 (264)
T KOG0617|consen  169 IGDL--TRLRELHIQGN  183 (264)
T ss_pred             HHHH--HHHHHHhcccc
Confidence            4444  55555544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.18  E-value=2.4e-13  Score=125.59  Aligned_cols=112  Identities=27%  Similarity=0.369  Sum_probs=63.6

Q ss_pred             CcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcchhhhc-CccccccccccccCCCCCCEEEeeCCCCCCCCCcccCC
Q 039239           11 KSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGNIEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGN   88 (323)
Q Consensus        11 ~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~   88 (323)
                      ..+|..++.+.+|+.|+.++|. ..++|+.+ ....++++. ..+++.++|++++.+.+|..|++.+|.. ..+|+..-+
T Consensus       104 s~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~  181 (565)
T KOG0472|consen  104 SELPEQIGSLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIA  181 (565)
T ss_pred             hhccHHHhhhhhhhhhhccccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHH
Confidence            3344444444445555544432 22222222 222244443 4556667777777777777777777543 334444444


Q ss_pred             CcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           89 LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        89 l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      |+.|++||...|.++.+|+.++.+. +|..|++. .|+
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~-~L~~LyL~-~Nk  217 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLE-SLELLYLR-RNK  217 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchh-hhHHHHhh-hcc
Confidence            7777777777777777777777777 77777776 666

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.16  E-value=3.7e-13  Score=124.38  Aligned_cols=153  Identities=25%  Similarity=0.288  Sum_probs=76.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |++++|.+....++ +.++..|.+|++.+| .+.+.|..++.+. +..+. ..+++.++|+.++.+.+|..|+.++|. .
T Consensus        50 lils~N~l~~l~~d-l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~-~  126 (565)
T KOG0472|consen   50 LILSHNDLEVLRED-LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE-L  126 (565)
T ss_pred             hhhccCchhhccHh-hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc-e
Confidence            34555553333333 556666666666663 3333444333322 22221 234455555555555555555555543 3


Q ss_pred             CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCC-CCC---------------cceecCcccc
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQ-MGL---------------LLPITLSIDG  143 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~-~~~---------------L~~l~L~~~l  143 (323)
                      .++|++++.+..|+.++..+|++.++|.+++.+. ++..+++. +|+.... +..               ++.+  |+++
T Consensus       127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~-~l~~l~~~-~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl--P~~l  202 (565)
T KOG0472|consen  127 KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS-KLSKLDLE-GNKLKALPENHIAMKRLKHLDCNSNLLETL--PPEL  202 (565)
T ss_pred             eecCchHHHHhhhhhhhccccccccCchHHHHHH-HHHHhhcc-ccchhhCCHHHHHHHHHHhcccchhhhhcC--Chhh
Confidence            3444555555555555555555555555555555 55555555 4441000 000               4444  5666


Q ss_pred             ccCCCCCeecCCCC-c-ccC
Q 039239          144 LHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       144 ~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      +.+.+|..||+..| + .+|
T Consensus       203 g~l~~L~~LyL~~Nki~~lP  222 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLP  222 (565)
T ss_pred             cchhhhHHHHhhhcccccCC
Confidence            66666666666666 4 444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.14  E-value=3.6e-11  Score=115.94  Aligned_cols=168  Identities=21%  Similarity=0.225  Sum_probs=95.6

Q ss_pred             CEEecCCCCCCcCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-Ccccccccccc-ccCCCCCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSS-ICKLKSLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~-i~~L~~L~~L~Ls~n   76 (323)
                      .|||+.|.+. .+| +++..-.++++|+|++|....---..+..++ +..+. ..+.+.++|.- |.+|++|+.|+|..|
T Consensus       153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence            3688887743 344 4466567888888888654432222222222 33332 23456666653 444777777777766


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCC-------------------------hhHHhcccccceeEccCCCCCCCCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVP-------------------------SSVVRLNNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-------------------------~~i~~l~~~L~~L~l~~~n~~~~~~  131 (323)
                      .+-..---.|..+.+|+.|.+..|.|..+-                         .+++.++ +|+.|+++ .|.     
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS-~Na-----  304 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLS-YNA-----  304 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc-hhhhhccc-hhh-----
Confidence            543221123444444444444444444332                         2344444 44444444 444     


Q ss_pred             CCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          132 GLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                        +..+. ++.+...++|++|+|+.| + .+|+.++..|  .+|+.+.+..|
T Consensus       305 --I~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L--~~Le~LnLs~N  351 (873)
T KOG4194|consen  305 --IQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVL--SQLEELNLSHN  351 (873)
T ss_pred             --hheee-cchhhhcccceeEeccccccccCChhHHHHH--HHhhhhccccc
Confidence              34333 245677889999999999 8 8888777777  67777766665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.08  E-value=6.8e-11  Score=114.05  Aligned_cols=167  Identities=21%  Similarity=0.275  Sum_probs=104.7

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-Ccccccccc-ccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLP-SSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP-~~i~~L~~L~~L~Ls~n~~   78 (323)
                      ||+++|++...-+..|.++++|+.++|.. +.+..+|.+..... ++.|. ..+.+.++- ..+.-++.|+.|||+.|.+
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i  161 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI  161 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence            78888886666667788888888888888 56677776654433 22221 123344442 2355566777777777654


Q ss_pred             CCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      ...--.++..-.++++|+|++|.|+.+- ..+..+. +|..|.|+ .|.       ++.+. +..|+++++|+.|+|..|
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkLs-rNr-------ittLp-~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKLS-RNR-------ITTLP-QRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hcccCCCCCCCCCceEEeeccccccccccccccccc-hheeeecc-cCc-------ccccC-HHHhhhcchhhhhhcccc
Confidence            4433344555566777777777776653 4566666 77777777 666       66662 145667777888888777


Q ss_pred             -c-ccCccccccccchhhhhhhhhhh
Q 039239          158 -F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 -l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       + .+....++.|  +||+.+++..|
T Consensus       232 ~irive~ltFqgL--~Sl~nlklqrN  255 (873)
T KOG4194|consen  232 RIRIVEGLTFQGL--PSLQNLKLQRN  255 (873)
T ss_pred             ceeeehhhhhcCc--hhhhhhhhhhc
Confidence             5 4433344445  66777666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.05  E-value=2.1e-10  Score=117.41  Aligned_cols=111  Identities=24%  Similarity=0.298  Sum_probs=57.1

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      |+|++|+ +..+|..+.  .+|++|++++|. +..+|..+ ..+...++++| .+..+|..+.  ++|+.|++++|++. 
T Consensus       204 L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L~-  275 (754)
T PRK15370        204 LILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSIN-RITELPERLP--SALQSLDLFHNKIS-  275 (754)
T ss_pred             EEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCC-ccCcCChhHh--CCCCEEECcCCccC-
Confidence            5566655 345555443  466666666654 33455422 12223333443 3455665543  45666777665443 


Q ss_pred             CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+|..+.  .+|+.|++++|.++.+|..+.  + +|+.|+++ +|.
T Consensus       276 ~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~-sL~~L~Ls-~N~  315 (754)
T PRK15370        276 CLPENLP--EELRYLSVYDNSIRTLPAHLP--S-GITHLNVQ-SNS  315 (754)
T ss_pred             ccccccC--CCCcEEECCCCccccCcccch--h-hHHHHHhc-CCc
Confidence            4565443  356666666666666654332  1 45555555 443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.04  E-value=7.7e-10  Score=113.15  Aligned_cols=14  Identities=36%  Similarity=0.601  Sum_probs=8.6

Q ss_pred             CCCeecCCCC-c-ccC
Q 039239          148 DLRHFDLSGN-F-KLD  161 (323)
Q Consensus       148 ~L~~L~Ls~N-l-~lP  161 (323)
                      +|+.|++++| + .+|
T Consensus       383 ~L~~LdLs~N~Lt~LP  398 (788)
T PRK15387        383 GLKELIVSGNRLTSLP  398 (788)
T ss_pred             ccceEEecCCcccCCC
Confidence            5666666666 5 555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.99  E-value=5.7e-10  Score=114.31  Aligned_cols=112  Identities=21%  Similarity=0.310  Sum_probs=71.6

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcC-CcchhhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS-AGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~-~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      .|++++|+ +..+|..+.  .+|+.|+|++|... .+|..+. .+..++++ ++.+..+|..+.  ++|+.|++++|++.
T Consensus       224 ~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls-~N~L~~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        224 TLYANSNQ-LTSIPATLP--DTIQEMELSINRIT-ELPERLPSALQSLDLF-HNKISCLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             EEECCCCc-cccCChhhh--ccccEEECcCCccC-cCChhHhCCCCEEECc-CCccCccccccC--CCCcEEECCCCccc
Confidence            37888887 557887554  57899999997644 6775432 22233343 567778887664  57889999888654


Q ss_pred             CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                       .+|..+.  .+|+.|++++|.+..+|..+.  + +|+.|+++ +|.
T Consensus       297 -~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~-sL~~L~Ls-~N~  336 (754)
T PRK15370        297 -TLPAHLP--SGITHLNVQSNSLTALPETLP--P-GLKTLEAG-ENA  336 (754)
T ss_pred             -cCcccch--hhHHHHHhcCCccccCCcccc--c-cceecccc-CCc
Confidence             4665442  356666666666666665432  2 56666666 555

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=1.5e-09  Score=110.01  Aligned_cols=66  Identities=29%  Similarity=0.419  Sum_probs=33.9

Q ss_pred             cccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccc-ccCChhHHhcccccceeEccCCCC
Q 039239           59 PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        59 P~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      |..++++++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+ +.+|..++.++ +|+.|+++ +|.
T Consensus       435 p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~-~L~~L~Ls-~N~  501 (623)
T PLN03150        435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLRILNLN-GNS  501 (623)
T ss_pred             CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC-CCCEEECc-CCc
Confidence            33444455555555555555555555555555555555555555 24455555555 55555555 443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.89  E-value=3e-10  Score=114.59  Aligned_cols=152  Identities=28%  Similarity=0.422  Sum_probs=109.9

Q ss_pred             ecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhc-Ccccccccc--------------------
Q 039239            4 LSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEIC-GCKRLKSLP--------------------   59 (323)
Q Consensus         4 Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~-~~~~l~~lP--------------------   59 (323)
                      ..+|. +..+|...+.+++|+.|+|.. +.++.+|+.+-...   +..+. .++.+..+|                    
T Consensus       294 ~~~ne-l~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  294 AAYNE-LEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             hhhhh-hhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            34454 667888788899999999999 56777776322111   11110 122222222                    


Q ss_pred             -----ccccCCCCCCEEEeeCCCCCCCCCc-ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239           60 -----SSICKLKSLKVLNLDGCSNIQKLPH-ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL  133 (323)
Q Consensus        60 -----~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~  133 (323)
                           +-+.+..+|++|+|++|. ++.+|. .+.++..|++|+++||+++.+|..+..+. .|++|... +|.       
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~-~L~tL~ah-sN~-------  441 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG-RLHTLRAH-SNQ-------  441 (1081)
T ss_pred             cccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh-hhHHHhhc-CCc-------
Confidence                 235677889999999975 667775 47788899999999999999999999998 99999888 777       


Q ss_pred             cceecCccccccCCCCCeecCCCC-c---ccC---c-cccccccc
Q 039239          134 LLPITLSIDGLHMTDLRHFDLSGN-F---KLD---R-KEVRGIFE  170 (323)
Q Consensus       134 L~~l~L~~~l~~l~~L~~L~Ls~N-l---~lP---~-~~L~~L~~  170 (323)
                      +..+  | ++.+++.|+.+|++.| +   .+|   | ++|++||+
T Consensus       442 l~~f--P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  442 LLSF--P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDL  483 (1081)
T ss_pred             eeec--h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeec
Confidence            6666  5 8899999999999999 6   454   3 66777766

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.84  E-value=1.6e-10  Score=111.12  Aligned_cols=143  Identities=27%  Similarity=0.412  Sum_probs=113.7

Q ss_pred             ecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhh-cCccccccccccccCCCCCCEEEeeCCCCCCCC
Q 039239            4 LSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKL   82 (323)
Q Consensus         4 Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L-~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~l   82 (323)
                      |.+|. ...+|..+.++..|++|||+. +.+..+|.-+..+.+.-+ -.+++++.+|+.++.+..|..||.+.|. +..+
T Consensus       105 Ly~n~-~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~sl  181 (722)
T KOG0532|consen  105 LYHNC-IRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSL  181 (722)
T ss_pred             HHhcc-ceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhc
Confidence            34444 567788888888888888888 456677776666665443 3567888899989888889999988875 5567


Q ss_pred             CcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-cc
Q 039239           83 PHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KL  160 (323)
Q Consensus        83 p~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~l  160 (323)
                      |..++.+.+|+.|.+..|.+..+|..+..|+  |..|+++ .|+       +..+  |.+|.+|+.|++|-|.+| | +=
T Consensus       182 psql~~l~slr~l~vrRn~l~~lp~El~~Lp--Li~lDfS-cNk-------is~i--Pv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  182 PSQLGYLTSLRDLNVRRNHLEDLPEELCSLP--LIRLDFS-CNK-------ISYL--PVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc--eeeeecc-cCc-------eeec--chhhhhhhhheeeeeccCCCCCC
Confidence            7888888899999999999988998888774  8889998 787       7777  888999999999999999 8 44


Q ss_pred             C
Q 039239          161 D  161 (323)
Q Consensus       161 P  161 (323)
                      |
T Consensus       250 P  250 (722)
T KOG0532|consen  250 P  250 (722)
T ss_pred             h
Confidence            4

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=5.6e-09  Score=88.65  Aligned_cols=117  Identities=21%  Similarity=0.307  Sum_probs=43.0

Q ss_pred             CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccccccc-CCCCCCEEEeeCCCCCCCCCcccCC
Q 039239           10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSIC-KLKSLKVLNLDGCSNIQKLPHELGN   88 (323)
Q Consensus        10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~-~L~~L~~L~Ls~n~~~~~lp~~l~~   88 (323)
                      ...+|. +.+..+++.|+|+||.                      +..+. .++ .+.+|+.|++++|.+.. + +.+..
T Consensus         9 i~~~~~-~~n~~~~~~L~L~~n~----------------------I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~   62 (175)
T PF14580_consen    9 IEQIAQ-YNNPVKLRELNLRGNQ----------------------ISTIE-NLGATLDKLEVLDLSNNQITK-L-EGLPG   62 (175)
T ss_dssp             ---------------------------------------------------S--TT-TT--EEE-TTS--S----TT---
T ss_pred             cccccc-cccccccccccccccc----------------------ccccc-chhhhhcCCCEEECCCCCCcc-c-cCccC
Confidence            445565 4557788999999953                      22222 233 57899999999987654 4 46888


Q ss_pred             CcccceeeccccccccCChhHH-hcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239           89 LEALNSLYAKGIATTEVPSSVV-RLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus        89 l~~L~~L~L~~n~i~~lP~~i~-~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      +++|+.|++++|.|++++..+. .++ +|++|+++ +|+       +..++-=..++.+++|+.|++.+| + .-+
T Consensus        63 L~~L~~L~L~~N~I~~i~~~l~~~lp-~L~~L~L~-~N~-------I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   63 LPRLKTLDLSNNRISSISEGLDKNLP-NLQELYLS-NNK-------ISDLNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             -TT--EEE--SS---S-CHHHHHH-T-T--EEE-T-TS----------SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             hhhhhhcccCCCCCCccccchHHhCC-cCCEEECc-CCc-------CCChHHhHHHHcCCCcceeeccCCcccchh
Confidence            9999999999999999977664 688 99999999 888       544422245678999999999999 6 444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.82  E-value=2.9e-10  Score=105.21  Aligned_cols=199  Identities=17%  Similarity=0.203  Sum_probs=138.0

Q ss_pred             EEecCCCCCCcCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCcccccccccc-ccCCCCCCEEEeeCC
Q 039239            2 LDLSDCKSLKSLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSS-ICKLKSLKVLNLDGC   76 (323)
Q Consensus         2 L~Ls~n~~l~~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n   76 (323)
                      ++|..|+ ++.|| ..|+.+++|+.|||++|+....-|+.+..+. +..  +.+.++++.+|+. |++|.+|+.|.+.-|
T Consensus        72 irLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen   72 IRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             EEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence            5677887 45555 6689999999999999887777777655444 433  3466889999985 789999999999998


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCC----------------CCCC------
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDK----------------QMGL------  133 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~----------------~~~~------  133 (323)
                      .+.-...+.|..|++|..|.+.+|.+..++. ++..+. .++.+++. .|.+.-                ..+.      
T Consensus       151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-~i~tlhlA-~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-AIKTLHLA-QNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-ccchHhhh-cCccccccccchhhhHHhhchhhcccceecch
Confidence            8888888889999999999999999998887 777777 88888887 554211                0000      


Q ss_pred             -------------------ccee-------cC-----c-cccccCCCCCeecCCCC-c-ccCc------cccccccc--h
Q 039239          134 -------------------LLPI-------TL-----S-IDGLHMTDLRHFDLSGN-F-KLDR------KEVRGIFE--D  171 (323)
Q Consensus       134 -------------------L~~l-------~L-----~-~~l~~l~~L~~L~Ls~N-l-~lP~------~~L~~L~~--~  171 (323)
                                         ++.+       +.     | ..|+.+++|+.|+|++| + .|.+      ..+++|.+  +
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N  308 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN  308 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence                               1111       00     1 35789999999999999 8 7764      33444443  5


Q ss_pred             hhhhhhhhhhhhHHHHhhcccccccceeEeCCC
Q 039239          172 ALQDIQLMAAARWKQVREEGYFLEKCGYVIFPG  204 (323)
Q Consensus       172 sL~~l~l~~n~~~~~l~~~~~~~~~~~~~~~pg  204 (323)
                      +++.++-..-+.++.+...++..+.+ ..+-||
T Consensus       309 ~l~~v~~~~f~~ls~L~tL~L~~N~i-t~~~~~  340 (498)
T KOG4237|consen  309 KLEFVSSGMFQGLSGLKTLSLYDNQI-TTVAPG  340 (498)
T ss_pred             hHHHHHHHhhhccccceeeeecCCee-EEEecc
Confidence            55555422223344444455556665 444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.80  E-value=8.5e-09  Score=105.60  Aligned_cols=130  Identities=25%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcch--------------------hhhcCcccccccccc
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI--------------------EEICGCKRLKSLPSS   61 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l--------------------~~L~~~~~l~~lP~~   61 (323)
                      |++++|+ +..+|..   +++|+.|+|++|.. ..+|.....+..                    +++++ +.+..+|..
T Consensus       287 L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~l  360 (788)
T PRK15387        287 LWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPTL  360 (788)
T ss_pred             EECcCCc-ccccccc---ccccceeECCCCcc-ccCCCCcccccccccccCccccccccccccceEecCC-CccCCCCCC
Confidence            4566665 4455542   46677777777543 334443222221                    11222 333444432


Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI  141 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~  141 (323)
                         ..+|+.|++++|.+. .+|..   ..+|+.|++++|.++.+|...   + +|+.|+++ +|.       +..+  |.
T Consensus       361 ---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l~---s-~L~~LdLS-~N~-------LssI--P~  419 (788)
T PRK15387        361 ---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLP---S-ELKELMVS-GNR-------LTSL--PM  419 (788)
T ss_pred             ---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCcc---c-CCCEEEcc-CCc-------CCCC--Cc
Confidence               123444555554433 34432   235666777777776666432   3 56666776 665       4433  32


Q ss_pred             ccccCCCCCeecCCCC-c-ccC
Q 039239          142 DGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       142 ~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      .   ..+|+.|++++| + .||
T Consensus       420 l---~~~L~~L~Ls~NqLt~LP  438 (788)
T PRK15387        420 L---PSGLLSLSVYRNQLTRLP  438 (788)
T ss_pred             c---hhhhhhhhhccCcccccC
Confidence            1   234555566665 5 555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.75  E-value=4.3e-10  Score=108.29  Aligned_cols=160  Identities=28%  Similarity=0.380  Sum_probs=122.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      .||+.|+ ..++|..+..+..|+.+.|.. +.+..+|+.+..+.   +++|+. +.+..+|..++.|+ |+.|.+++| +
T Consensus        80 aDlsrNR-~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNN-k  154 (722)
T KOG0532|consen   80 ADLSRNR-FSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNN-K  154 (722)
T ss_pred             hhccccc-cccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecC-c
Confidence            4677776 566787777788888888877 45677777666655   445554 56778888888776 899999885 5


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      ++.+|+.++.+..|..||.+.|.+..+|+.++.+. +|+.|.+. .|.       +..+  |.++.. -.|..||+++| 
T Consensus       155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~-slr~l~vr-Rn~-------l~~l--p~El~~-LpLi~lDfScNk  222 (722)
T KOG0532|consen  155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLT-SLRDLNVR-RNH-------LEDL--PEELCS-LPLIRLDFSCNK  222 (722)
T ss_pred             cccCCcccccchhHHHhhhhhhhhhhchHHhhhHH-HHHHHHHh-hhh-------hhhC--CHHHhC-CceeeeecccCc
Confidence            88999999988999999999999999999999999 99999998 777       5555  777763 35889999999 


Q ss_pred             c-ccCccccccccchhhhhhhhhhh
Q 039239          158 F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      + .|| -.++.+  ..|+.+.+-.|
T Consensus       223 is~iP-v~fr~m--~~Lq~l~LenN  244 (722)
T KOG0532|consen  223 ISYLP-VDFRKM--RHLQVLQLENN  244 (722)
T ss_pred             eeecc-hhhhhh--hhheeeeeccC
Confidence            8 898 333344  45555554444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.70  E-value=2.2e-09  Score=108.39  Aligned_cols=121  Identities=33%  Similarity=0.427  Sum_probs=91.9

Q ss_pred             EecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccccc-ccCCCCCCEEEeeCCCCCCC
Q 039239            3 DLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS-ICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         3 ~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      .+.+|.+....-+-+.++++|+.|+|++                      +.+.++|++ +.++..|++|+|||| .+..
T Consensus       365 ylanN~Ltd~c~p~l~~~~hLKVLhLsy----------------------NrL~~fpas~~~kle~LeeL~LSGN-kL~~  421 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLVNFKHLKVLHLSY----------------------NRLNSFPASKLRKLEELEELNLSGN-KLTT  421 (1081)
T ss_pred             HHhcCcccccchhhhccccceeeeeecc----------------------cccccCCHHHHhchHHhHHHhcccc-hhhh
Confidence            3455554443333355567777777776                      345566654 668889999999996 5788


Q ss_pred             CCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +|+.+.++..|++|...+|.+..+| .+..++ .|+.+|++ .|.       |..+.++..... ++|++||++||
T Consensus       422 Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~-qL~~lDlS-~N~-------L~~~~l~~~~p~-p~LkyLdlSGN  486 (1081)
T KOG0618|consen  422 LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLP-QLKVLDLS-CNN-------LSEVTLPEALPS-PNLKYLDLSGN  486 (1081)
T ss_pred             hhHHHHhhhhhHHHhhcCCceeech-hhhhcC-cceEEecc-cch-------hhhhhhhhhCCC-cccceeeccCC
Confidence            8999999999999999999999999 788899 99999999 777       777766643322 78999999999

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.56  E-value=3.8e-08  Score=83.57  Aligned_cols=118  Identities=22%  Similarity=0.281  Sum_probs=46.6

Q ss_pred             EEecCCCCCCcCCcccC-CCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEIS-NLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~-~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      |+|++|++ ..+.. ++ .+.+|+.|+|++|.                      ++.++ .+..++.|++|++++|.+..
T Consensus        24 L~L~~n~I-~~Ie~-L~~~l~~L~~L~Ls~N~----------------------I~~l~-~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   24 LNLRGNQI-STIEN-LGATLDKLEVLDLSNNQ----------------------ITKLE-GLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             -------------S---TT-TT--EEE-TTS------------------------S--T-T----TT--EEE--SS---S
T ss_pred             cccccccc-ccccc-hhhhhcCCCEEECCCCC----------------------Ccccc-CccChhhhhhcccCCCCCCc
Confidence            78888874 44443 65 58899999999963                      33333 35568999999999987654


Q ss_pred             CCCccc-CCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecC--ccccccCCCCCeecC
Q 039239           81 KLPHEL-GNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL--SIDGLHMTDLRHFDL  154 (323)
Q Consensus        81 ~lp~~l-~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L--~~~l~~l~~L~~L~L  154 (323)
                       +.+.+ ..+++|++|++++|+|..+-  ..+..++ +|+.|++. +|.       +....-  ..-+..+++|+.||-
T Consensus        79 -i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~-~L~~L~L~-~NP-------v~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   79 -ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP-KLRVLSLE-GNP-------VCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T-T--EEE-T-T-G-------GGGSTTHHHHHHHH-TT-SEETT
T ss_pred             -cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC-Ccceeecc-CCc-------ccchhhHHHHHHHHcChhheeCC
Confidence             54444 46899999999999986543  4667888 99999999 887       332200  012356677777663

>PLN03150 hypothetical protein; Provisional

Probab=98.53  E-value=1.1e-07  Score=96.42  Aligned_cols=106  Identities=19%  Similarity=0.255  Sum_probs=84.1

Q ss_pred             CCCEEEeeCCCCCCCCCcccCCCcccceeecccccc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcccccc
Q 039239           67 SLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLH  145 (323)
Q Consensus        67 ~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~  145 (323)
                      .++.|+|++|.+.+.+|..++++++|+.|++++|.+ +.+|..++.++ +|+.|+++ +|.       +.. .+|..+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~-~L~~LdLs-~N~-------lsg-~iP~~l~~  488 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLS-YNS-------FNG-SIPESLGQ  488 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCC-CCCEEECC-CCC-------CCC-CCchHHhc
Confidence            378899999999999999999999999999999999 58999999999 99999999 887       442 23778899


Q ss_pred             CCCCCeecCCCC-c--ccCccccccccchhhhhhhhhhhhhH
Q 039239          146 MTDLRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAAARW  184 (323)
Q Consensus       146 l~~L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n~~~  184 (323)
                      +++|+.|+|++| +  .+| ..+..+. ..+..+++..|..+
T Consensus       489 L~~L~~L~Ls~N~l~g~iP-~~l~~~~-~~~~~l~~~~N~~l  528 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVP-AALGGRL-LHRASFNFTDNAGL  528 (623)
T ss_pred             CCCCCEEECcCCcccccCC-hHHhhcc-ccCceEEecCCccc
Confidence            999999999999 7  787 3333221 22334445555433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.47  E-value=2.7e-08  Score=89.62  Aligned_cols=85  Identities=19%  Similarity=0.181  Sum_probs=38.8

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI  141 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~  141 (323)
                      +..|++|+.|||++|.+ .++-..-..+.+.+.|.+++|.|..+ +.++.+- +|..|++. +|.       ++.++--.
T Consensus       325 La~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLY-SLvnLDl~-~N~-------Ie~ldeV~  393 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLY-SLVNLDLS-SNQ-------IEELDEVN  393 (490)
T ss_pred             hhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhh-hheecccc-ccc-------hhhHHHhc
Confidence            33444555555555432 22222222344445555555555443 3344444 45555555 444       33333223


Q ss_pred             ccccCCCCCeecCCCC
Q 039239          142 DGLHMTDLRHFDLSGN  157 (323)
Q Consensus       142 ~l~~l~~L~~L~Ls~N  157 (323)
                      .+++++.|+++.|.+|
T Consensus       394 ~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  394 HIGNLPCLETLRLTGN  409 (490)
T ss_pred             ccccccHHHHHhhcCC
Confidence            4555555555555555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.47  E-value=3.2e-08  Score=91.49  Aligned_cols=147  Identities=17%  Similarity=0.048  Sum_probs=79.8

Q ss_pred             EEecCCCCC------CcCCcccCCCCCCCEEeeeCCCCCccCCCCcCC------cchhhhcCcccc----ccccccccCC
Q 039239            2 LDLSDCKSL------KSLPAEISNLESLKKLNLSGCSKLKRLPEFSSA------GNIEEICGCKRL----KSLPSSICKL   65 (323)
Q Consensus         2 L~Ls~n~~l------~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~------l~l~~L~~~~~l----~~lP~~i~~L   65 (323)
                      |+++++...      ..++..+..+++|+.|++++|......+..+..      +...++++|..-    ..+...+..+
T Consensus        56 l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~  135 (319)
T cd00116          56 LCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL  135 (319)
T ss_pred             EeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC
Confidence            456665533      233455677889999999998766443322111      222223333221    1233344455


Q ss_pred             -CCCCEEEeeCCCCCC----CCCcccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCCCcc
Q 039239           66 -KSLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLL  135 (323)
Q Consensus        66 -~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~  135 (323)
                       ++|+.|++++|.+.+    .++..+..+++|++|++++|.++     .++..+...+ +|+.|+++ +|.       +.
T Consensus       136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~-~n~-------i~  206 (319)
T cd00116         136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLN-NNG-------LT  206 (319)
T ss_pred             CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-CCCEEecc-CCc-------cC
Confidence             667777777776553    22334555566777777777664     2334445555 67777776 555       22


Q ss_pred             eec---CccccccCCCCCeecCCCC
Q 039239          136 PIT---LSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       136 ~l~---L~~~l~~l~~L~~L~Ls~N  157 (323)
                      ...   +...+..+++|++|++++|
T Consensus       207 ~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         207 DEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             hHHHHHHHHHhcccCCCCEEecCCC
Confidence            211   1233455666777777776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.42  E-value=4.9e-08  Score=87.94  Aligned_cols=113  Identities=19%  Similarity=0.234  Sum_probs=84.0

Q ss_pred             cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCC
Q 039239           53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMG  132 (323)
Q Consensus        53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~  132 (323)
                      +.+.++-.++.-++.++.|++++|.+...  .++..+.+|+.||+++|.+.++-.+-..+. +++.|.++ +|.      
T Consensus       294 N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG-NIKtL~La-~N~------  363 (490)
T KOG1259|consen  294 NLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLG-NIKTLKLA-QNK------  363 (490)
T ss_pred             cchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhc-CEeeeehh-hhh------
Confidence            45666777777778888999998876654  457888889999999998887776667777 88888888 887      


Q ss_pred             CcceecCccccccCCCCCeecCCCC-c-ccCc-cccccccchhhhhhhhhhh
Q 039239          133 LLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR-KEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       133 ~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~-~~L~~L~~~sL~~l~l~~n  181 (323)
                       ++.+   +.++++-+|..||+++| + .+.. ..+..|  +.|+.+.+..|
T Consensus       364 -iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L--PCLE~l~L~~N  409 (490)
T KOG1259|consen  364 -IETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL--PCLETLRLTGN  409 (490)
T ss_pred             -Hhhh---hhhHhhhhheeccccccchhhHHHhcccccc--cHHHHHhhcCC
Confidence             6666   45678889999999999 5 4431 233334  67777776666

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.42  E-value=1.6e-08  Score=93.50  Aligned_cols=148  Identities=20%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             EEecCCCCC-CcCCcccCCCCCCCEEeeeCCCCCcc----CCCCcCCc---chhhhcCc------cccccccccccCCCC
Q 039239            2 LDLSDCKSL-KSLPAEISNLESLKKLNLSGCSKLKR----LPEFSSAG---NIEEICGC------KRLKSLPSSICKLKS   67 (323)
Q Consensus         2 L~Ls~n~~l-~~lP~~i~~L~~L~~L~Ls~c~~l~~----~p~~~~~l---~l~~L~~~------~~l~~lP~~i~~L~~   67 (323)
                      |+|+.+... ...+..+..+.+|+.|++++|.....    ++......   ....++++      ..+..++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            566666654 34444455577788888888765321    22222111   11122221      223345566777888


Q ss_pred             CCEEEeeCCCCCCCCCcccCCCcc---cceeeccccccc-----cCChhHHhc-ccccceeEccCCCCCCCCCCCccee-
Q 039239           68 LKVLNLDGCSNIQKLPHELGNLEA---LNSLYAKGIATT-----EVPSSVVRL-NNKLYELSSDRSRRGDKQMGLLLPI-  137 (323)
Q Consensus        68 L~~L~Ls~n~~~~~lp~~l~~l~~---L~~L~L~~n~i~-----~lP~~i~~l-~~~L~~L~l~~~n~~~~~~~~L~~l-  137 (323)
                      |+.|++++|.+.+..+..+..+.+   |++|++++|.++     .+...+..+ + +|+.|+++ +|.       ++.- 
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~-~n~-------l~~~~  153 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLG-RNR-------LEGAS  153 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcC-CCc-------CCchH
Confidence            999999988877666665555555   899999888875     234455666 6 88999998 776       3311 


Q ss_pred             --cCccccccCCCCCeecCCCC-c
Q 039239          138 --TLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       138 --~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                        .+...+..+++|++|++++| +
T Consensus       154 ~~~~~~~~~~~~~L~~L~l~~n~l  177 (319)
T cd00116         154 CEALAKALRANRDLKELNLANNGI  177 (319)
T ss_pred             HHHHHHHHHhCCCcCEEECcCCCC
Confidence              11234556677888888888 5

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.37  E-value=2.9e-07  Score=64.13  Aligned_cols=55  Identities=24%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             CCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEcc
Q 039239           67 SLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSD  122 (323)
Q Consensus        67 ~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~  122 (323)
                      +|++|++++|++...-+..|..+++|++|++++|.++.+| ..+..++ +|+.|+++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~   57 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLS   57 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEET
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCc
Confidence            3444555554333322234444555555555555554443 2444444 55555554

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=2.3e-07  Score=88.84  Aligned_cols=146  Identities=29%  Similarity=0.412  Sum_probs=88.8

Q ss_pred             EEecCCCCCCcCCcccCCCC-CCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLE-SLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~-~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++.+|. ...+|+..+.+. +|+.|++++| .+..+|...+.+. +..|. ..+.+..+|...+.++.|+.|++++|. 
T Consensus       121 L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-  197 (394)
T COG4886         121 LDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-  197 (394)
T ss_pred             EecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-
Confidence            4555555 555666566553 7888888774 4444443333222 33332 335566777766677777888887754 


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      +..+|..++.+..|++|.+++|.+.+++..+..+. ++..+.+. ++.       +..+  +..++.+++++.|++++| 
T Consensus       198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~-~l~~l~l~-~n~-------~~~~--~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK-NLSGLELS-NNK-------LEDL--PESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             cccCchhhhhhhhhhhhhhcCCcceecchhhhhcc-cccccccC-Cce-------eeec--cchhccccccceecccccc
Confidence            55666665566667777777776666666777777 77777666 555       3332  344556666667777766 


Q ss_pred             c-ccC
Q 039239          158 F-KLD  161 (323)
Q Consensus       158 l-~lP  161 (323)
                      + .++
T Consensus       267 i~~i~  271 (394)
T COG4886         267 ISSIS  271 (394)
T ss_pred             ccccc
Confidence            5 554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=2.4e-07  Score=88.71  Aligned_cols=129  Identities=26%  Similarity=0.427  Sum_probs=89.2

Q ss_pred             cCCCCCCCEEeeeCCCCCccCCCCcCCc--chhhhc-CccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccc
Q 039239           17 ISNLESLKKLNLSGCSKLKRLPEFSSAG--NIEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALN   93 (323)
Q Consensus        17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l--~l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~   93 (323)
                      +..++.++.|++.+ ....++|...+..  ++..+. ..+.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+
T Consensus       112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence            55567788888887 4455566555554  344443 346677777778888888888888875 445555555778888


Q ss_pred             eeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239           94 SLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus        94 ~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                      .|++++|.+..+|..+.... .|+++.++ +|.       +...  +..+.+++++..+.+.+| +
T Consensus       190 ~L~ls~N~i~~l~~~~~~~~-~L~~l~~~-~N~-------~~~~--~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         190 NLDLSGNKISDLPPEIELLS-ALEELDLS-NNS-------IIEL--LSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             heeccCCccccCchhhhhhh-hhhhhhhc-CCc-------ceec--chhhhhcccccccccCCcee
Confidence            88888888888888776665 68888888 664       1222  355677777788888777 5

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.30  E-value=4.5e-07  Score=63.17  Aligned_cols=58  Identities=31%  Similarity=0.327  Sum_probs=42.4

Q ss_pred             cccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           90 EALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        90 ~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      ++|++|++++|.+..+|. .+..++ +|+.|+++ +|.       ++.+. +..|..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~-~L~~L~l~-~N~-------l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLP-NLETLDLS-NNN-------LTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGT-TESEEEET-SSS-------ESEEE-TTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCC-CCCEeEcc-CCc-------cCccC-HHHHcCCCCCCEEeCcCC
Confidence            357778888888877764 556677 88888888 777       66663 356777888888888877

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.28  E-value=1.5e-07  Score=87.52  Aligned_cols=112  Identities=21%  Similarity=0.284  Sum_probs=86.6

Q ss_pred             cccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccc-cccccCCh-hHHhcccccceeEccCCCCCCC
Q 039239           53 KRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG-IATTEVPS-SVVRLNNKLYELSSDRSRRGDK  129 (323)
Q Consensus        53 ~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~-n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~  129 (323)
                      +.++.||+ +|+.+++|+.|||+.|++...-|+.|..+.+|..|-+.+ |+|+.+|. .++.+. +++.|.+. .|+   
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-slqrLllN-an~---  151 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-SLQRLLLN-ANH---  151 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-HHHHHhcC-hhh---
Confidence            56778877 578899999999999999999999999999988887766 88999986 677787 89988887 666   


Q ss_pred             CCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhh
Q 039239          130 QMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDI  176 (323)
Q Consensus       130 ~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l  176 (323)
                          +..+. ...+..+++|..|.+.+| + .|+..+++.+  .+++++
T Consensus       152 ----i~Cir-~~al~dL~~l~lLslyDn~~q~i~~~tf~~l--~~i~tl  193 (498)
T KOG4237|consen  152 ----INCIR-QDALRDLPSLSLLSLYDNKIQSICKGTFQGL--AAIKTL  193 (498)
T ss_pred             ----hcchh-HHHHHHhhhcchhcccchhhhhhccccccch--hccchH
Confidence                44441 356777888888888888 7 7775455555  334444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.18  E-value=3.1e-06  Score=80.61  Aligned_cols=81  Identities=30%  Similarity=0.511  Sum_probs=49.0

Q ss_pred             CCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecc
Q 039239           19 NLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAK   98 (323)
Q Consensus        19 ~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~   98 (323)
                      .+.+++.|++++| .+..+|.....++-+.+.+|..++.+|..+  ..+|+.|++++|..+..+|..      |+.|++.
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~  120 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIK  120 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeC
Confidence            4567777777776 566666544444444556677777777655  256777777777666666654      4445555


Q ss_pred             ccc---cccCChh
Q 039239           99 GIA---TTEVPSS  108 (323)
Q Consensus        99 ~n~---i~~lP~~  108 (323)
                      ++.   ++.+|.+
T Consensus       121 ~n~~~~L~~LPss  133 (426)
T PRK15386        121 GSATDSIKNVPNG  133 (426)
T ss_pred             CCCCcccccCcch
Confidence            544   3444543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.15  E-value=1.6e-07  Score=93.17  Aligned_cols=155  Identities=22%  Similarity=0.212  Sum_probs=107.6

Q ss_pred             CcccCCCCCCCEEeeeCCCCCccC---------CCCcCCcc--------------------h---hhhc-Cccccccccc
Q 039239           14 PAEISNLESLKKLNLSGCSKLKRL---------PEFSSAGN--------------------I---EEIC-GCKRLKSLPS   60 (323)
Q Consensus        14 P~~i~~L~~L~~L~Ls~c~~l~~~---------p~~~~~l~--------------------l---~~L~-~~~~l~~lP~   60 (323)
                      |-.|..+.+|+.|.|.+|......         -..+..-.                    +   ...+ .|+.+..+-.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence            445677899999999999654311         00110000                    1   1121 4566777777


Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS  140 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~  140 (323)
                      ++.-++.|+.|||++|++...  +.+..+.+|++||+++|.+..+|.--..-. +|..|.++ +|.       ++.+   
T Consensus       182 SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr-nN~-------l~tL---  247 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR-NNA-------LTTL---  247 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeec-ccH-------HHhh---
Confidence            787888999999999876655  378899999999999999998886322223 68999999 887       7777   


Q ss_pred             cccccCCCCCeecCCCC-c-ccCccccccccc-hhhhhhhhhhhhhH
Q 039239          141 IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFE-DALQDIQLMAAARW  184 (323)
Q Consensus       141 ~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~-~sL~~l~l~~n~~~  184 (323)
                      ..+.++.+|+.||++.| + .--  .|.-|-. .+|..+.+-+|+.+
T Consensus       248 ~gie~LksL~~LDlsyNll~~hs--eL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  248 RGIENLKSLYGLDLSYNLLSEHS--ELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhHHhhhhhhccchhHhhhhcch--hhhHHHHHHHHHHHhhcCCccc
Confidence            46789999999999999 5 321  3333322 66677777777544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.09  E-value=6e-06  Score=78.69  Aligned_cols=78  Identities=27%  Similarity=0.631  Sum_probs=53.2

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc-CCcchhhhcCccccccccccccCCCCCCEEEeeCC--C
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS-SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGC--S   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n--~   77 (323)
                      .|++++| .++.+|. +  ..+|+.|.+++|..+..+|+.+ ..++-+.+.+|..+..+|++      |+.|++.++  .
T Consensus        56 ~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~  125 (426)
T PRK15386         56 RLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPES------VRSLEIKGSATD  125 (426)
T ss_pred             EEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccc------cceEEeCCCCCc
Confidence            3889999 4788883 2  3579999999999998888644 23334456688888888875      455555543  3


Q ss_pred             CCCCCCcccCC
Q 039239           78 NIQKLPHELGN   88 (323)
Q Consensus        78 ~~~~lp~~l~~   88 (323)
                      .++.+|.++..
T Consensus       126 ~L~~LPssLk~  136 (426)
T PRK15386        126 SIKNVPNGLTS  136 (426)
T ss_pred             ccccCcchHhh
Confidence            35667765443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.08  E-value=2.7e-06  Score=88.98  Aligned_cols=93  Identities=29%  Similarity=0.372  Sum_probs=73.9

Q ss_pred             ccccccc-ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239           55 LKSLPSS-ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL  133 (323)
Q Consensus        55 l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~  133 (323)
                      +..++.. |..++.|++|||++|...+.+|..++.+-+|++|+++++.+.++|.++.++. +|.+|++. .+..      
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk-~L~~Lnl~-~~~~------  630 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLK-KLIYLNLE-VTGR------  630 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHH-hhheeccc-cccc------
Confidence            4445544 5679999999999999999999999999999999999999999999999999 99999998 5542      


Q ss_pred             cceecCccccccCCCCCeecCCCC
Q 039239          134 LLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       134 L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +...  +.....+++|++|.+..-
T Consensus       631 l~~~--~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  631 LESI--PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccc--cchhhhcccccEEEeecc
Confidence            2222  333445777777776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.96  E-value=3e-06  Score=88.62  Aligned_cols=153  Identities=23%  Similarity=0.203  Sum_probs=99.8

Q ss_pred             EecCCCC-CCcCCc-ccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhhhc-CccccccccccccCCCCCCEEEeeCCCC
Q 039239            3 DLSDCKS-LKSLPA-EISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         3 ~Ls~n~~-l~~lP~-~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      -+..|.. +..++. .|..++.|++|||++|...+++|+.++.+- ++.|. ..+.+..+|.++++|+.|.+||+..+..
T Consensus       551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence            3444442 444554 366799999999999999999998877543 44332 3467889999999999999999999888


Q ss_pred             CCCCCcccCCCcccceeeccccccc---cCChhHHhcccccceeEccCCCCCCCCCCC--------------ccee---c
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATT---EVPSSVVRLNNKLYELSSDRSRRGDKQMGL--------------LLPI---T  138 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~---~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~--------------L~~l---~  138 (323)
                      +..+|..+..|.+|++|.+......   ..-..+.++. .|+.+... .........+              +...   .
T Consensus       631 l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le-~L~~ls~~-~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~  708 (889)
T KOG4658|consen  631 LESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE-HLENLSIT-ISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRT  708 (889)
T ss_pred             cccccchhhhcccccEEEeeccccccchhhHHhhhccc-chhhheee-cchhHhHhhhhhhHHHHHHhHhhhhcccccce
Confidence            8888877777999999988665421   1223445555 56555554 2221110000              0000   1


Q ss_pred             CccccccCCCCCeecCCCC
Q 039239          139 LSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       139 L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +...+..+.+|+.|.+.+|
T Consensus       709 ~~~~~~~l~~L~~L~i~~~  727 (889)
T KOG4658|consen  709 LISSLGSLGNLEELSILDC  727 (889)
T ss_pred             eecccccccCcceEEEEcC
Confidence            1245567788888888887

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=2.3e-06  Score=80.61  Aligned_cols=151  Identities=21%  Similarity=0.144  Sum_probs=89.2

Q ss_pred             EEecCCCCCC--cCCcccCCCCCCCEEeeeCCCCCccCCC----CcCCcchhhhcCcccc-ccccccccCCCCCCEEEee
Q 039239            2 LDLSDCKSLK--SLPAEISNLESLKKLNLSGCSKLKRLPE----FSSAGNIEEICGCKRL-KSLPSSICKLKSLKVLNLD   74 (323)
Q Consensus         2 L~Ls~n~~l~--~lP~~i~~L~~L~~L~Ls~c~~l~~~p~----~~~~l~l~~L~~~~~l-~~lP~~i~~L~~L~~L~Ls   74 (323)
                      |||++|-+..  .+-.....|++|+.|+|+.|...--...    .+..++-+.+++|..- ..+-.....+++|+.|+|.
T Consensus       151 LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~  230 (505)
T KOG3207|consen  151 LDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLE  230 (505)
T ss_pred             ecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhh
Confidence            5666664322  2223346789999999998654322211    1111112223344321 2233334456778888888


Q ss_pred             CCCCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecCccc-----cccCC
Q 039239           75 GCSNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSID-----GLHMT  147 (323)
Q Consensus        75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~-----l~~l~  147 (323)
                      +|......-....-+..|+.|+|++|++-..+  ..++.++ .|..|+++ .+.       +.++..|+.     ...++
T Consensus       231 ~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls-~tg-------i~si~~~d~~s~~kt~~f~  301 (505)
T KOG3207|consen  231 ANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLS-STG-------IASIAEPDVESLDKTHTFP  301 (505)
T ss_pred             cccccceecchhhhhhHHhhccccCCccccccccccccccc-chhhhhcc-ccC-------cchhcCCCccchhhhcccc
Confidence            87544433344455667888888888876555  4667777 78888777 666       555555533     35677


Q ss_pred             CCCeecCCCC-c-ccC
Q 039239          148 DLRHFDLSGN-F-KLD  161 (323)
Q Consensus       148 ~L~~L~Ls~N-l-~lP  161 (323)
                      +|+.|+++.| + .++
T Consensus       302 kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  302 KLEYLNISENNIRDWR  317 (505)
T ss_pred             cceeeecccCcccccc
Confidence            8888888888 6 555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.3e-05  Score=51.97  Aligned_cols=40  Identities=30%  Similarity=0.438  Sum_probs=26.5

Q ss_pred             CCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC
Q 039239           66 KSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP  106 (323)
Q Consensus        66 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP  106 (323)
                      ++|++|++++|++. .+|..+++|++|+.|++++|.|+.+|
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35777777776554 56666777777777777777776554

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=9e-06  Score=76.76  Aligned_cols=131  Identities=20%  Similarity=0.243  Sum_probs=59.8

Q ss_pred             ccCCCCCCCEEeeeCCCCCccCC--CCcCCcc-hhh--hcCccccccccc-cccCCCCCCEEEeeCCCCCCC-CCcccCC
Q 039239           16 EISNLESLKKLNLSGCSKLKRLP--EFSSAGN-IEE--ICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQK-LPHELGN   88 (323)
Q Consensus        16 ~i~~L~~L~~L~Ls~c~~l~~~p--~~~~~l~-l~~--L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~-lp~~l~~   88 (323)
                      -...+++++.|||++|-...-.|  .+...+. ++.  ++.+...--..+ .-..+++|+.|.|+.|.+... +-..+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            35579999999999964322111  0111111 111  111110000000 011345566666666655421 1112334


Q ss_pred             Ccccceeeccccc-cc--cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           89 LEALNSLYAKGIA-TT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        89 l~~L~~L~L~~n~-i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +++|+.|++.+|. +.  ..+..+  +. .|++|+++ +|.       +...+.-...+.++.|+.|+++.|
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i--~~-~L~~LdLs-~N~-------li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKI--LQ-TLQELDLS-NNN-------LIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhh--hh-HHhhcccc-CCc-------ccccccccccccccchhhhhcccc
Confidence            4556666666663 22  222222  22 56666666 554       333322234566777777777777

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.46  E-value=0.0001  Score=47.74  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             cccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           90 EALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        90 ~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      ++|++|++++|+|+.+|..+.+++ +|+.|+++ +|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~-~L~~L~l~-~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLP-NLETLNLS-NNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCT-TSSEEEET-SSC
T ss_pred             CcceEEEccCCCCcccCchHhCCC-CCCEEEec-CCC
Confidence            468888888888888888888888 88888888 777

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.34  E-value=5.1e-05  Score=73.37  Aligned_cols=82  Identities=26%  Similarity=0.332  Sum_probs=44.7

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI  141 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~  141 (323)
                      +..+.+|++|++++|.+...  ..+..+..|+.|++.+|.|..+.. +..+. .|+.++++ +|.       +..+  ..
T Consensus       114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~-~L~~l~l~-~n~-------i~~i--e~  179 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG-LESLK-SLKLLDLS-YNR-------IVDI--EN  179 (414)
T ss_pred             hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC-Cccch-hhhcccCC-cch-------hhhh--hh
Confidence            45566666666666544333  235556666666666666655432 22344 66666666 555       2332  11


Q ss_pred             c-cccCCCCCeecCCCC
Q 039239          142 D-GLHMTDLRHFDLSGN  157 (323)
Q Consensus       142 ~-l~~l~~L~~L~Ls~N  157 (323)
                      . ...+.+++.+++.+|
T Consensus       180 ~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  180 DELSELISLEELDLGGN  196 (414)
T ss_pred             hhhhhccchHHHhccCC
Confidence            1 355566666666666

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.29  E-value=6.7e-06  Score=81.98  Aligned_cols=117  Identities=22%  Similarity=0.248  Sum_probs=74.4

Q ss_pred             CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCc-ccCC
Q 039239           10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPH-ELGN   88 (323)
Q Consensus        10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~   88 (323)
                      +..+..++.-++.|+.|||++|.                      +..+- .+..|+.|++|||++|. +..+|. +...
T Consensus       176 L~~mD~SLqll~ale~LnLshNk----------------------~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~g  231 (1096)
T KOG1859|consen  176 LVLMDESLQLLPALESLNLSHNK----------------------FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVG  231 (1096)
T ss_pred             HHhHHHHHHHHHHhhhhccchhh----------------------hhhhH-HHHhcccccccccccch-hccccccchhh
Confidence            44455556656777777777743                      22222 35567788888888875 445553 2233


Q ss_pred             CcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239           89 LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus        89 l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      +. |+.|.+.+|.++++ ..+.++. +|+.|+++ .|-       |....==.-++.+..|+.|+|.|| + .=|
T Consensus       232 c~-L~~L~lrnN~l~tL-~gie~Lk-sL~~LDls-yNl-------l~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  232 CK-LQLLNLRNNALTTL-RGIENLK-SLYGLDLS-YNL-------LSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hh-heeeeecccHHHhh-hhHHhhh-hhhccchh-Hhh-------hhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            33 88888888888776 5678888 88888888 554       222200023456778888888888 6 444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.26  E-value=9.5e-05  Score=71.52  Aligned_cols=93  Identities=24%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             ccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcc
Q 039239           56 KSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLL  135 (323)
Q Consensus        56 ~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~  135 (323)
                      +.+-..++.+++|..|++.+|.+.+. ...+..+.+|++|++++|.|+.+ ..+..++ .|+.|+++ +|.       +.
T Consensus        85 ~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~-~L~~L~l~-~N~-------i~  153 (414)
T KOG0531|consen   85 AKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL-EGLSTLT-LLKELNLS-GNL-------IS  153 (414)
T ss_pred             hhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc-cchhhcc-chhhheec-cCc-------ch
Confidence            33333467889999999999875544 33378899999999999999988 4577788 89999999 898       56


Q ss_pred             eecCccccccCCCCCeecCCCC-c-ccCc
Q 039239          136 PITLSIDGLHMTDLRHFDLSGN-F-KLDR  162 (323)
Q Consensus       136 ~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~  162 (323)
                      .+   ..+..+++|+.+++++| + .++.
T Consensus       154 ~~---~~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  154 DI---SGLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hc---cCCccchhhhcccCCcchhhhhhh
Confidence            55   45566899999999999 7 7764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=1.3e-05  Score=72.44  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             cCCCCCCCEEeeeCCCCCccCCCCc-CCcc--hhhhcCccccccccc--cccCCCCCCEEEeeCCCCCCCCC-cccCCC-
Q 039239           17 ISNLESLKKLNLSGCSKLKRLPEFS-SAGN--IEEICGCKRLKSLPS--SICKLKSLKVLNLDGCSNIQKLP-HELGNL-   89 (323)
Q Consensus        17 i~~L~~L~~L~Ls~c~~l~~~p~~~-~~l~--l~~L~~~~~l~~lP~--~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~l-   89 (323)
                      ++.+.+|+.|.|.|+.....+-..+ .+-.  -.+++.|+.+++..-  -+.+++.|..|+|+.|-.....- ..+.+. 
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his  285 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS  285 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence            3445566666666643322221111 1111  123344555443322  24567788888888876554321 112222 


Q ss_pred             cccceeeccccc--c--ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCCcccCcccc
Q 039239           90 EALNSLYAKGIA--T--TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEV  165 (323)
Q Consensus        90 ~~L~~L~L~~n~--i--~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~Nl~lP~~~L  165 (323)
                      ++|+.|+++|+.  +  ..+..-..+++ +|.+|+++ +|..      ++. ++-..|.+++.|++|.++.|..|||..+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp-~l~~LDLS-D~v~------l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~  356 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCP-NLVHLDLS-DSVM------LKN-DCFQEFFKFNYLQHLSLSRCYDIIPETL  356 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCC-ceeeeccc-cccc------cCc-hHHHHHHhcchheeeehhhhcCCChHHe
Confidence            357778888764  2  23333345666 88888888 6552      222 2234567888899999999853333333


Q ss_pred             ccccc-hhhhhhhhhhh
Q 039239          166 RGIFE-DALQDIQLMAA  181 (323)
Q Consensus       166 ~~L~~-~sL~~l~l~~n  181 (323)
                      -++.- ++|.++++|..
T Consensus       357 ~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  357 LELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeccCcceEEEEeccc
Confidence            33333 55555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.14  E-value=4.6e-05  Score=61.59  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCC-cccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNL-EALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS  140 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l-~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~  140 (323)
                      +.+...|+..+|++|. +..+|+.|... +.++.|++.+|.|.++|..+..++ .|+.|+++ .|.       +...  |
T Consensus        49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~-aLr~lNl~-~N~-------l~~~--p  116 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP-ALRSLNLR-FNP-------LNAE--P  116 (177)
T ss_pred             HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH-Hhhhcccc-cCc-------cccc--h
Confidence            4445566777888864 56667665543 467888888888888888888888 88888888 776       4443  4


Q ss_pred             cccccCCCCCeecCCCC-c-ccC
Q 039239          141 IDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       141 ~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      .-+..+.++-.||..+| . .||
T Consensus       117 ~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  117 RVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             HHHHHHHhHHHhcCCCCccccCc
Confidence            55556777888888888 6 776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.14  E-value=3.6e-05  Score=62.20  Aligned_cols=99  Identities=30%  Similarity=0.393  Sum_probs=61.3

Q ss_pred             EEecCCCCCCcCCcc---cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccC-CCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAE---ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICK-LKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~---i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~-L~~L~~L~Ls~n~   77 (323)
                      +||++|. +..+++.   +.....|+..+|++|                      .+..+|+.+.. .+.++.|++++|.
T Consensus        32 ldLssc~-lm~i~davy~l~~~~el~~i~ls~N----------------------~fk~fp~kft~kf~t~t~lNl~~ne   88 (177)
T KOG4579|consen   32 LDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN----------------------GFKKFPKKFTIKFPTATTLNLANNE   88 (177)
T ss_pred             cccccch-hhHHHHHHHHHhCCceEEEEecccc----------------------hhhhCCHHHhhccchhhhhhcchhh
Confidence            5666666 4444433   333445555567763                      34445554432 2356777777754


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                       +..+|+.+..++.|+.|++..|.+...|.-+..+. ++..|+.. +|.
T Consensus        89 -isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~-~l~~Lds~-~na  134 (177)
T KOG4579|consen   89 -ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLI-KLDMLDSP-ENA  134 (177)
T ss_pred             -hhhchHHHhhhHHhhhcccccCccccchHHHHHHH-hHHHhcCC-CCc
Confidence             55677777777777777777777777777777766 77777766 555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.79  E-value=0.00039  Score=71.21  Aligned_cols=56  Identities=27%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             CCCCCEEEeeCCCCC-CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239           65 LKSLKVLNLDGCSNI-QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        65 L~~L~~L~Ls~n~~~-~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~  122 (323)
                      |++|+.|.+++=.+. ..+-....++++|..||+++++++.+ .+++++. +|+.|.+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk-nLq~L~mr  203 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK-NLQVLSMR  203 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc-cHHHHhcc
Confidence            566666666653221 11223344566666667777666665 5666666 66666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.53  E-value=0.00036  Score=64.45  Aligned_cols=96  Identities=21%  Similarity=0.154  Sum_probs=62.1

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcc----cCCCcccceeeccccccccCChh--------------HHhcccccceeEcc
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHE----LGNLEALNSLYAKGIATTEVPSS--------------VVRLNNKLYELSSD  122 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~----l~~l~~L~~L~L~~n~i~~lP~~--------------i~~l~~~L~~L~l~  122 (323)
                      .+-..++|++||||+|-+--..+..    +.++..|++|+|.+|.++..-..              +..-+ +|+++...
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~-~Lrv~i~~  165 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKP-KLRVFICG  165 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCc-ceEEEEee
Confidence            3445678999999998776555543    56788999999999998643211              12223 67888777


Q ss_pred             CCCCCCCCC-----------CCcceecCc-------------cccccCCCCCeecCCCC-c
Q 039239          123 RSRRGDKQM-----------GLLLPITLS-------------IDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       123 ~~n~~~~~~-----------~~L~~l~L~-------------~~l~~l~~L~~L~Ls~N-l  158 (323)
                       +|......           ..++.+.++             ..+.++++|+.|||..| |
T Consensus       166 -rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  166 -RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             -ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh
Confidence             66522111           013333332             34578999999999999 6

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.23  E-value=0.0024  Score=56.87  Aligned_cols=60  Identities=20%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCCCEEEeeCC--CCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCC
Q 039239           65 LKSLKVLNLDGC--SNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        65 L~~L~~L~Ls~n--~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~  126 (323)
                      |++|+.|.++.|  ...+.++.....+++|++|++++|+|..+-  ..+..+. +|..|++. +|.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~-nL~~Ldl~-n~~  127 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE-NLKSLDLF-NCS  127 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc-chhhhhcc-cCC
Confidence            556666666666  445555555555566666666666654210  1233344 45555555 444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.12  E-value=0.0081  Score=51.80  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=52.7

Q ss_pred             CCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcccccc
Q 039239           66 KSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLH  145 (323)
Q Consensus        66 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~  145 (323)
                      .+...+||++|.+ ..+ +.|..+..|.+|.+++|.|+.|-+.+..+-.+|..|.+. +|.       +..+.==.-+..
T Consensus        42 d~~d~iDLtdNdl-~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt-nNs-------i~~l~dl~pLa~  111 (233)
T KOG1644|consen   42 DQFDAIDLTDNDL-RKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT-NNS-------IQELGDLDPLAS  111 (233)
T ss_pred             cccceecccccch-hhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEec-Ccc-------hhhhhhcchhcc
Confidence            4566777777653 333 356677788888888888877755555444368888887 666       444310023456


Q ss_pred             CCCCCeecCCCC
Q 039239          146 MTDLRHFDLSGN  157 (323)
Q Consensus       146 l~~L~~L~Ls~N  157 (323)
                      +++|++|.+-+|
T Consensus       112 ~p~L~~Ltll~N  123 (233)
T KOG1644|consen  112 CPKLEYLTLLGN  123 (233)
T ss_pred             CCccceeeecCC
Confidence            777888877777

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.00  E-value=0.0041  Score=63.86  Aligned_cols=88  Identities=18%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             cCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCC-cceecC
Q 039239           63 CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGL-LLPITL  139 (323)
Q Consensus        63 ~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~-L~~l~L  139 (323)
                      .++++|..||+|++++.-.  .+++++++|+.|.+.+-.+..-.  ..+++|+ +|+.||+| ..+....+.. ...+  
T Consensus       170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~-~L~vLDIS-~~~~~~~~~ii~qYl--  243 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK-KLRVLDIS-RDKNNDDTKIIEQYL--  243 (699)
T ss_pred             hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhccc-CCCeeecc-ccccccchHHHHHHH--
Confidence            4678999999999875544  78999999999999888775432  4788999 99999999 4442110000 1111  


Q ss_pred             ccccccCCCCCeecCCCC
Q 039239          140 SIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~N  157 (323)
                       +.-..++.|+.||.|+.
T Consensus       244 -ec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  244 -ECGMVLPELRFLDCSGT  260 (699)
T ss_pred             -HhcccCccccEEecCCc
Confidence             23356889999999987

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.68  E-value=0.0033  Score=34.19  Aligned_cols=18  Identities=39%  Similarity=0.431  Sum_probs=9.7

Q ss_pred             cceeeccccccccCChhH
Q 039239           92 LNSLYAKGIATTEVPSSV  109 (323)
Q Consensus        92 L~~L~L~~n~i~~lP~~i  109 (323)
                      |++|++++|.++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.60  E-value=0.0015  Score=60.47  Aligned_cols=87  Identities=10%  Similarity=0.009  Sum_probs=50.9

Q ss_pred             CCCCCCEEEeeCCCCCCCCC-----cccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239           64 KLKSLKVLNLDGCSNIQKLP-----HELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMGL  133 (323)
Q Consensus        64 ~L~~L~~L~Ls~n~~~~~lp-----~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~  133 (323)
                      .-+.|+++....|.+ +..+     ..+...+.|+.+.+..|.|.     -+-..+..++ .|+.|++. .|....    
T Consensus       155 ~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~-DNtft~----  227 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLR-DNTFTL----  227 (382)
T ss_pred             CCcceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecc-cchhhh----
Confidence            345677777777643 3322     34556677777777777763     1234566777 78888887 665210    


Q ss_pred             cceecCccccccCCCCCeecCCCC
Q 039239          134 LLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       134 L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      --...+...+..+++|++|++++|
T Consensus       228 egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  228 EGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHHHHHHHHhcccchheeeccccc
Confidence            011112234456667777777777

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.58  E-value=0.00025  Score=64.38  Aligned_cols=91  Identities=26%  Similarity=0.250  Sum_probs=64.2

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCc--ccCCCcccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcce
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPH--ELGNLEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLP  136 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~  136 (323)
                      .|.+-..|+.|+|+.|+-.....-  -+.+++.|..|+++-|.+.  .+--.+.+...+|+.|+++ ++......     
T Consensus       229 ~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls-G~rrnl~~-----  302 (419)
T KOG2120|consen  229 TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS-GYRRNLQK-----  302 (419)
T ss_pred             HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh-hhHhhhhh-----
Confidence            466778999999999976655432  3678899999999999873  3444566666689999999 76532111     


Q ss_pred             ecCccccccCCCCCeecCCCC
Q 039239          137 ITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       137 l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      -++..--..+++|.+|||++|
T Consensus       303 sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  303 SHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             hHHHHHHHhCCceeeeccccc
Confidence            111222367899999999999

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.36  E-value=0.022  Score=49.18  Aligned_cols=63  Identities=19%  Similarity=0.095  Sum_probs=48.3

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCC
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +..++.|.+|.+++|.++..-|.--.-+++|..|.+.+|.|.++-  .-+..++ +|+.|.+- +|.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p-~L~~Ltll-~Np  124 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP-KLEYLTLL-GNP  124 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCC-ccceeeec-CCc
Confidence            556889999999998887776655445677999999999986542  2456777 88888888 776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.0013  Score=59.33  Aligned_cols=81  Identities=20%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             CCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccc
Q 039239           65 LKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGL  144 (323)
Q Consensus        65 L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~  144 (323)
                      +.+.+.|+..||.+...  .....|+.|+.|.|+-|+|+++ ..+..+. +|++|.|. .|.       +..++-=..+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCt-rLkElYLR-kN~-------I~sldEL~YLk   85 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCT-RLKELYLR-KNC-------IESLDELEYLK   85 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHH-HHHHHHHH-hcc-------cccHHHHHHHh
Confidence            45667788888875433  3456889999999999999887 4577888 99999998 776       44442113457


Q ss_pred             cCCCCCeecCCCC
Q 039239          145 HMTDLRHFDLSGN  157 (323)
Q Consensus       145 ~l~~L~~L~Ls~N  157 (323)
                      ++++|+.|.|..|
T Consensus        86 nlpsLr~LWL~EN   98 (388)
T KOG2123|consen   86 NLPSLRTLWLDEN   98 (388)
T ss_pred             cCchhhhHhhccC
Confidence            8899999999988

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.99  E-value=0.019  Score=51.28  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=57.3

Q ss_pred             CCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc--cc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239           64 KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI--AT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS  140 (323)
Q Consensus        64 ~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n--~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~  140 (323)
                      .+..|+.|.+.++..+..  ..+-.|++|+.|.++.|  .+ ..++.....++ +|++++++ +|+       ++.+.=-
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls-~Nk-------i~~lstl  109 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLS-GNK-------IKDLSTL  109 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCC-ceeEEeec-CCc-------ccccccc
Confidence            345666666766654432  24557889999999999  44 35666666677 99999999 888       3333111


Q ss_pred             cccccCCCCCeecCCCC
Q 039239          141 IDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       141 ~~l~~l~~L~~L~Ls~N  157 (323)
                      ..+..+.+|..||+.+|
T Consensus       110 ~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNC  126 (260)
T ss_pred             chhhhhcchhhhhcccC
Confidence            34567888999999988

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.82  E-value=0.0084  Score=32.53  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=17.2

Q ss_pred             CCCEEEeeCCCCCCCCCcccCCC
Q 039239           67 SLKVLNLDGCSNIQKLPHELGNL   89 (323)
Q Consensus        67 ~L~~L~Ls~n~~~~~lp~~l~~l   89 (323)
                      +|++|++++|++. .+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            5899999999766 888877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.79  E-value=0.01  Score=54.20  Aligned_cols=68  Identities=25%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccc--ccCChhHHhcccccceeEccCCCC
Q 039239           57 SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT--TEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        57 ~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i--~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      ++-.-+.+|+.|+.|+|+.|++...+-..-..+.+|+.|-+.|+.+  +..-+.+..+| ++++|+++ .|.
T Consensus        88 eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP-~vtelHmS-~N~  157 (418)
T KOG2982|consen   88 EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP-KVTELHMS-DNS  157 (418)
T ss_pred             HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch-hhhhhhhc-cch
Confidence            3444466889999999998876544422113567889999998886  46667788888 88999888 665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.70  E-value=0.033  Score=28.19  Aligned_cols=16  Identities=25%  Similarity=0.281  Sum_probs=5.8

Q ss_pred             ccceeeccccccccCC
Q 039239           91 ALNSLYAKGIATTEVP  106 (323)
Q Consensus        91 ~L~~L~L~~n~i~~lP  106 (323)
                      +|+.|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3445555555544443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.09  E-value=0.071  Score=29.93  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=17.1

Q ss_pred             CcccceeeccccccccCChhHH
Q 039239           89 LEALNSLYAKGIATTEVPSSVV  110 (323)
Q Consensus        89 l~~L~~L~L~~n~i~~lP~~i~  110 (323)
                      +++|++|++++|.|..+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4578888888888888887654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.09  E-value=0.071  Score=29.93  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=17.1

Q ss_pred             CcccceeeccccccccCChhHH
Q 039239           89 LEALNSLYAKGIATTEVPSSVV  110 (323)
Q Consensus        89 l~~L~~L~L~~n~i~~lP~~i~  110 (323)
                      +++|++|++++|.|..+|...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4578888888888888887654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=0.0085  Score=54.17  Aligned_cols=60  Identities=22%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             cCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh--hHHhcccccceeEccCCCC
Q 039239           63 CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS--SVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        63 ~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~--~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+++.|++|.|+-|.+..-  ..+..+++|++|+|..|.|..+-+  -+.+++ +|+.|-+. .|.
T Consensus        38 ~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlp-sLr~LWL~-ENP   99 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLP-SLRTLWLD-ENP   99 (388)
T ss_pred             HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc-hhhhHhhc-cCC
Confidence            4789999999999876654  347799999999999999976633  456778 88988887 665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.29  E-value=0.072  Score=48.76  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CCCCCEEEeeCCCCCC--CCCcccCCCcccceeeccccccc----cCChhHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239           65 LKSLKVLNLDGCSNIQ--KLPHELGNLEALNSLYAKGIATT----EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT  138 (323)
Q Consensus        65 L~~L~~L~Ls~n~~~~--~lp~~l~~l~~L~~L~L~~n~i~----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~  138 (323)
                      .+.++.|||.+|.+..  .+-..+.+|+.|+.|+++.|.+.    .+|   ..+. +|+.|-+. +..       |.--.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~-nl~~lVLN-gT~-------L~w~~  137 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK-NLRVLVLN-GTG-------LSWTQ  137 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc-ceEEEEEc-CCC-------CChhh
Confidence            4567778888876653  23334667888888888888753    344   2333 67777765 433       11111


Q ss_pred             CccccccCCCCCeecCCCC
Q 039239          139 LSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       139 L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +...+..++.+++|+++.|
T Consensus       138 ~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  138 STSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             hhhhhhcchhhhhhhhccc
Confidence            1234567778888888888

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.25  E-value=1.6  Score=34.17  Aligned_cols=58  Identities=14%  Similarity=0.134  Sum_probs=26.2

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEcc
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSD  122 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~  122 (323)
                      +.++++|+.+.+.++ ....-...+.++.+|+.+.+.+ .+..++.. +..++ +|+.+.+.
T Consensus        31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~-~l~~i~~~   89 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT-NLKNIDIP   89 (129)
T ss_dssp             TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T-TECEEEET
T ss_pred             ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc-cccccccC
Confidence            445556667776653 2222223455665677776654 44444432 33355 66666664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.91  E-value=1.1  Score=40.72  Aligned_cols=93  Identities=20%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             EEecCCCCCCc----CCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKS----LPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~----lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      +|||+|.+-+.    +-..|.+-.+|+..+++. -.++..-+.+.          .++.-+-+.+-+++.|+..+||+|-
T Consensus        35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~----------~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELY----------SNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             EeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHH----------HHHHHHHHHHhcCCcceeeeccccc
Confidence            68888885543    344567788999999887 44544322110          1223333445677888888888888


Q ss_pred             CCCCCCcc----cCCCcccceeeccccccccC
Q 039239           78 NIQKLPHE----LGNLEALNSLYAKGIATTEV  105 (323)
Q Consensus        78 ~~~~lp~~----l~~l~~L~~L~L~~n~i~~l  105 (323)
                      +....|+.    +++-+.|.+|.+++|.++.+
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            87777754    45667888888888887643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.01  E-value=0.17  Score=45.89  Aligned_cols=90  Identities=18%  Similarity=0.237  Sum_probs=56.8

Q ss_pred             cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCC----C-------cc
Q 039239           17 ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKL----P-------HE   85 (323)
Q Consensus        17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~l----p-------~~   85 (323)
                      +..+..++.++||||..-.+                 ..+.+-..|.+-++|+..+++. -++|..    +       +.
T Consensus        26 l~~~d~~~evdLSGNtigtE-----------------A~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~a   87 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTE-----------------AMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKA   87 (388)
T ss_pred             HHhhcceeEEeccCCcccHH-----------------HHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHH
Confidence            34478888899999643222                 1122333345567777777776 344432    2       23


Q ss_pred             cCCCcccceeeccccccc-cCChh----HHhcccccceeEccCCCC
Q 039239           86 LGNLEALNSLYAKGIATT-EVPSS----VVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        86 l~~l~~L~~L~L~~n~i~-~lP~~----i~~l~~~L~~L~l~~~n~  126 (323)
                      +-.+++|+..++++|.++ +.|+.    |..-. .|++|.++ +|.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t-~l~HL~l~-NnG  131 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSST-DLVHLKLN-NNG  131 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCC-CceeEEee-cCC
Confidence            567788999999999985 45543    34445 68889888 665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.74  E-value=0.068  Score=47.28  Aligned_cols=84  Identities=13%  Similarity=0.078  Sum_probs=68.9

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI  141 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~  141 (323)
                      |.....-+.||++.|.. -.+-..++-++.|..|+++.|.+..+|...+.+. .+..+++. +|.       ++..  |.
T Consensus        38 i~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~-e~~~~~~~-~n~-------~~~~--p~  105 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQR-ETVNAASH-KNN-------HSQQ--PK  105 (326)
T ss_pred             hhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHhhChhhHHHHH-HHHHHHhh-ccc-------hhhC--Cc
Confidence            55667888999998753 3444567778889999999999999999999988 88888888 555       5655  88


Q ss_pred             ccccCCCCCeecCCCC
Q 039239          142 DGLHMTDLRHFDLSGN  157 (323)
Q Consensus       142 ~l~~l~~L~~L~Ls~N  157 (323)
                      ++++.+.++++++.++
T Consensus       106 s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKT  121 (326)
T ss_pred             cccccCCcchhhhccC
Confidence            8899999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 6e-25
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGNIEE--ICGCKRLKS 57
            L + +   L +L   I +L  L++L+L GC+ L+  P  F     ++   +  C  L +
Sbjct: 210 SLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 58  LPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           LP  I +L  L+ L+L GC N+ +LP  +  L A   + 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 40/171 (23%), Positives = 63/171 (36%), Gaps = 26/171 (15%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLP-EFSSAGNIEE--ICGCKRLKSL 58
           L+L     L   P +   L  L+ + +     L  LP        +E   +     L++L
Sbjct: 86  LELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRAL 142

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEA---------LNSLYAKGIATTEVPSSV 109
           P+SI  L  L+ L++  C  + +LP  L + +A         L SL  +      +P+S+
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI 202

Query: 110 VRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKL 160
             L N L  L    S          L   +     H+  L   DL G   L
Sbjct: 203 ANLQN-LKSLKIRNSPLSA------LGPAIH----HLPKLEELDLRGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 2e-23
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 6/117 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLP-EFSSAGNIEE--ICGCKRLKSL 58
           L L     ++SLPA I+NL++LK L +     L  L         +EE  + GC  L++ 
Sbjct: 188 LRLEWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNY 245

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG-IATTEVPSSVVRLNN 114
           P        LK L L  CSN+  LP ++  L  L  L  +G +  + +PS + +L  
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 45/170 (26%)

Query: 2   LDLSDCKSLKSLPAEISN---------LESLKKLNLSGCSKLKRLP-EFSSAGNIEE-IC 50
           L +  C  L  LP  +++         L +L+ L L   + ++ LP   ++  N++    
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKI 213

Query: 51  GCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVV 110
               L +L  +I  L  L+ L+L GC+ ++  P   G    L  L  K            
Sbjct: 214 RNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD----------- 262

Query: 111 RLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKL 160
              + L  L                     I  L  T L   DL G   L
Sbjct: 263 --CSNLLTLPL------------------DIHRL--TQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLP-EFSSAGNIEE--ICGCKRLKSL 58
           LDL  C +L++ P        LK+L L  CS L  LP +      +E+  + GC  L  L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEAL 92
           PS I +L +  ++ +      Q   H      A 
Sbjct: 294 PSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 20/163 (12%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           L      +L+     +S  +     + +      R    ++     E    + LK+    
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP--QIETRTGRALKATADL 74

Query: 62  I--CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYEL 119
           +          L L     + + P +   L  L  +        E+P ++ +    L  L
Sbjct: 75  LEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG-LETL 132

Query: 120 SSDRSRRGDKQMGLL--LPITLSIDGLHMTDLRHFDLSGNFKL 160
           +  R+         L  LP +++     +  LR   +    +L
Sbjct: 133 TLARNP--------LRALPASIA----SLNRLRELSIRACPEL 163

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 10/103 (9%), Positives = 22/103 (21%), Gaps = 12/103 (11%)

Query: 55  LKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN 114
           + S           + L   G + ++     L   +   +                  NN
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNR---WHSAWRQANSNN 57

Query: 115 KLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
              E  + R+         L      ++          +L   
Sbjct: 58  PQIETRTGRA---------LKATADLLEDATQPGRVALELRSV 91

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE 39
            LDL  C +L  LP+ I+ L +   + +    + +    
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 43/179 (24%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI-EEICGCKRLKSL-- 58
           +++ +C +L  LP  +  L  ++ +N++   +     +         +    ++++ +  
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACN-RGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 59  ----------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIAT---TEV 105
                      +S+ K+K L +L       ++      G+   L SL    +A    TE+
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLN---LAYNQITEI 368

Query: 106 PSSVVRLNNKLYELSSDRSRRGDKQMGLL-------LPITLSIDGLHMTDLRHFDLSGN 157
           P++      ++  LS                     +P       +  + +   D S N
Sbjct: 369 PANFCGFTEQVENLS-------------FAHNKLKYIPNIFDAKSV--SVMSAIDFSYN 412

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 3/95 (3%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           +       +  +   +  L  L++  +     +        A   E     ++ K+    
Sbjct: 188 IGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYKTEDLK 244

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
              LK L  + +  C N+ KLP  L  L  +  + 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 28/215 (13%), Positives = 50/215 (23%), Gaps = 81/215 (37%)

Query: 1   MLDLS-------DCKSLKSLPAEISNLESLKKLNLSG-------------CSKLKRL--- 37
            +D S       D K+   L        ++  +NLS               S L  +   
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 38  -------PEFSSAGNIEEICGCK----------RLKSLPSSI--CKLKSLKVLNLDGCSN 78
                  P+ S     E                +L  L        L  L  ++L    +
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-S 524

Query: 79  IQKLPHELGNLEALNSLYAKGIA-------TTEVPSSVVRL---------NNKLYELSSD 122
             K P +  N   L     +            E P  +            +N + +++  
Sbjct: 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE- 583

Query: 123 RSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
                             I      ++   D+  N
Sbjct: 584 -----------------KI----TPNISVLDIKDN 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 23/183 (12%), Positives = 43/183 (23%), Gaps = 30/183 (16%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           L L    +   +P  I  L  L+ L L    +      F      + I      +     
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF----GPKGISANMSDEQKQKM 141

Query: 59  --------PSSICKLKSLKVLNLDGCSN--IQKLPHELGNLEALNSLYAKGIATTEVPSS 108
                        +     ++     S+   + +            +       T V  +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 109 VVRL---------NNKL--YELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
           V+RL         N+      +         +         L  D L   DL   ++   
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL--KDLTDVEVYNC 259

Query: 158 FKL 160
             L
Sbjct: 260 PNL 262

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 20/175 (11%), Positives = 50/175 (28%), Gaps = 39/175 (22%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGC-----SKLKRLPEFSSAGNIEEICGCKRL 55
              + +   +     E    E+ +              LK L +         +  C  L
Sbjct: 210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE-------VYNCPNL 262

Query: 56  KSLPSSICKLKSLKVLNLDGCS--------NIQKLPHELGNLEALNSLYAKG--IATTEV 105
             LP+ +  L  ++++N+            +  +   +    E +  +Y     + T  V
Sbjct: 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322

Query: 106 PSSVVRLNN--KLYELSSDRSRRGDKQMGLLLPITLSIDGL-HMTDLRHFDLSGN 157
            +S+ ++     L     ++             +   +        L   +L+ N
Sbjct: 323 ETSLQKMKKLGMLE-CLYNQ-------------LEGKLPAFGSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 24/95 (25%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
            D    ++L+  P  I+   SL +L +                          ++ +   
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSN----------------------DIRKVNEK 584

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           I    ++ VL++    NI      +          
Sbjct: 585 I--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 17/172 (9%), Positives = 44/172 (25%), Gaps = 35/172 (20%)

Query: 3   DLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL---- 58
           +             +++   +  L+L G     R+P        + I     L+ L    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP--------DAIGQLTELEVLALGS 114

Query: 59  -----------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALN--SLYAKGIATTEV 105
                      P  I    S +          +         +  +            + 
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 106 PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
                R+  K  ++    +         +  ++ ++  + +T LR F +  +
Sbjct: 175 IKKSSRITLKDTQIGQLSNN--------ITFVSKAV--MRLTKLRQFYMGNS 216

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 26/148 (17%)

Query: 10  LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLK 69
           +  +   I  L  L+ +  +               +       K+ ++   S   LK L 
Sbjct: 437 ITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDAN-SDYAKQYENEELSWSNLKDLT 494

Query: 70  VLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDK 129
            + L  C N+ +LP  L +L  L SL                       ++ +R     +
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLN----------------------IACNRGISAAQ 532

Query: 130 QMGLLLPITLSIDGLHMTDLRHFDLSGN 157
                  +    D      ++ F +  N
Sbjct: 533 LKADWTRLADDEDTG--PKIQIFYMGYN 558

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 40/178 (22%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCK------- 53
           + LS  + ++  P E+ +    +  + LS    +  +PE S                   
Sbjct: 678 VTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 54  ---RLKSLPSSI--CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA------- 101
              +L SL        L  L  +++         P +  N   L +   +          
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794

Query: 102 TTEVPSSVVRLNN--KLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
             + P+ +    +  +L  + S+              I   +D      L   D++ N
Sbjct: 795 LRQWPTGITTCPSLIQLQ-IGSND-------------IR-KVDEKLTPQLYILDIADN 837

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 26/212 (12%), Positives = 50/212 (23%), Gaps = 56/212 (26%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLP-EFSSAGNIEEI----------- 49
            +    K  ++     SNL+ L  + L  C  + +LP        ++ +           
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 50  CGCKRLKSLPSSICKLKSLKVLNLDG--------------CSNIQKL---------PHEL 86
                   L         +++  +                   +  L             
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591

Query: 87  GNLEALNSLYAKGIATTEVPSSVVRL----------NNKLYELSSDRSRRGDKQM----- 131
           G    L  L        E+P                +NKL  + +  + +    M     
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 132 ------GLLLPITLSIDGLHMTDLRHFDLSGN 157
                      I+ S+D     +     LS N
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 24/192 (12%), Positives = 46/192 (23%), Gaps = 48/192 (25%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           L L+   +   +P  I  L  LK L+                  +      +R   +   
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 62  ICKL--------------------------------KSLKVLNLDGCSN-IQKLPHELGN 88
             K+                                 SLK   +   +N I  +   +  
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 89  LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTD 148
           L  L  +Y      T    +V   +          +            ++ S    ++ D
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN----------EELSWS----NLKD 492

Query: 149 LRHFDLSGNFKL 160
           L   +L     +
Sbjct: 493 LTDVELYNCPNM 504

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 25/171 (14%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI--CGCKRLKS 57
           LD    K ++ L         L  L L    +++ +PE   +    +E +     K LK 
Sbjct: 578 LDCVHNK-VRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKY 633

Query: 58  LPS--SICKLKSLKVLNLDGCSNIQKLPHELG---------NLEALNSLYAKGIATTEVP 106
           +P+  +   +  +  ++      I      +          N   +  L    I   + P
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVT-LSYNEI--QKFP 689

Query: 107 SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
           + +    + +  +    +         L P   +        L   DL  N
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT--YLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 21/206 (10%), Positives = 49/206 (23%), Gaps = 53/206 (25%)

Query: 2   LDLSDCKSLKSLP--AEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL- 58
           L  S  K LK +P      ++  +  ++ S   K+       +     +        ++ 
Sbjct: 624 LGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGR--NISCSMDDYKGINASTVT 679

Query: 59  ----------PSSICKLKSLKVLNLDGCS-------NIQKLPHELGNLEALNSLYAKGIA 101
                              +  + L           +++       N   L ++      
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID----- 734

Query: 102 TTEVPSSVVRL-NNKLYELSSDRSRRGDKQMGLL---------LPITLSIDGLHMTDLRH 151
                     L  NKL  LS D        +  +          P        + + L+ 
Sbjct: 735 ----------LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL----NSSQLKA 780

Query: 152 FDLSGNFKLDRKEVRGIFEDALQDIQ 177
           F +      +   +   +   +    
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCP 806

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 25/92 (27%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
            D    + L+  P  I+   SL +L +                          ++ +   
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSN----------------------DIRKVDEK 824

Query: 62  ICKLKSLKVLNLDGCSNIQ-KLPHELGNLEAL 92
           +     L +L++    NI   +      +EA 
Sbjct: 825 L--TPQLYILDIADNPNISIDVTSVCPYIEAG 854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 13/124 (10%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           +   +   LK LP    +LES+          L+ LPE  +   +  I      LK+LP 
Sbjct: 200 IYADNNS-LKKLPDLPLSLESI---VAGNN-ILEELPELQNLPFLTTIYADNNLLKTLPD 254

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLN---NKLY 117
               L++L V +      +  LP    +L  L+         +E+P ++  LN   N++ 
Sbjct: 255 LPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310

Query: 118 ELSS 121
            L  
Sbjct: 311 SLCD 314

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 37/169 (21%)

Query: 4   LSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-----CGCKRLKSL 58
           L    +L  +P E  N++S  +   +     +  P  +       +     C  ++   L
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 59  PSSICKLKS-------LKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVR 111
             +   L S       L+ L    C+++ +LP    +L++L        A +++P  +  
Sbjct: 77  ELNNLGLSSLPELPPHLESLVAS-CNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135

Query: 112 L---NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
           L   NN+L +L   +                     + + L+  D+  N
Sbjct: 136 LGVSNNQLEKLPELQ---------------------NSSFLKIIDVDNN 163

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L +S+ + L+ LP E+ N   LK +++     LK+LP+     ++E I  G  +L+ LP 
Sbjct: 136 LGVSNNQ-LEKLP-ELQNSSFLKIIDVDNN-SLKKLPD--LPPSLEFIAAGNNQLEELP- 189

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALN 93
            +  L  L  +  D   +++KLP    +LE++ 
Sbjct: 190 ELQNLPFLTAIYADNN-SLKKLPDLPLSLESIV 221

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 28/128 (21%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L+ S  + ++SL     +LE L   N+S   KL  LP  +    +E +      L  +P 
Sbjct: 302 LNASSNE-IRSLCDLPPSLEEL---NVSNN-KLIELP--ALPPRLERLIASFNHLAEVPE 354

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEAL---NSLYAKGIATTEVPSSVVRL----- 112
               LK L V        +++ P    ++E L   + L        EVP     L     
Sbjct: 355 LPQNLKQLHVEYN----PLREFPDIPESVEDLRMNSHL-------AEVPELPQNLKQLHV 403

Query: 113 -NNKLYEL 119
             N L E 
Sbjct: 404 ETNPLREF 411

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L +     L+  P    ++E L+  +      L  +PE     N++++      L+  P 
Sbjct: 362 LHVEYNP-LREFPDIPESVEDLRMNS-----HLAEVPE--LPQNLKQLHVETNPLREFPD 413

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS 94
               ++ L++ +       +        LE    
Sbjct: 414 IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 41/147 (27%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCS----------------KLKRLPEFSSAGN 45
           L++S  + L SLP     L  L   +                     +L  LP       
Sbjct: 86  LEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPG 142

Query: 46  IEEI-CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEAL----NSLYAKGI 100
           ++E+     +L SLP+   +L  L   N      +  LP     L+ L    N L     
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNN----QLTSLPMLPSGLQELSVSDNQL----- 193

Query: 101 ATTEVPSSVVRL------NNKLYELSS 121
               +P+    L      NN+L  L +
Sbjct: 194 --ASLPTLPSELYKLWAYNNRLTSLPA 218

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L +S  + L SLP   S L   K+L +SG  +L  LP       +  +     +L  LP 
Sbjct: 226 LIVSGNR-LTSLPVLPSEL---KELMVSGN-RLTSLPM--LPSGLLSLSVYRNQLTRLPE 278

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG-IATTEVPSSVVRLNNKLYEL 119
           S+  L S   +NL+G   + +   +          Y+   I      +S  R    L+  
Sbjct: 279 SLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

Query: 120 SSD 122
           ++D
Sbjct: 338 AAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 7e-09
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           L + D  +L SLPA       L+ L +SG  +L  LP            G   L    + 
Sbjct: 66  LVIPDN-NLTSLPALPPE---LRTLEVSGN-QLTSLP--------VLPPGLLELSIFSNP 112

Query: 62  ICKL----KSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRL---NN 114
           +  L      L  L + G   +  LP     L+ L+    +  +   +PS + +L   NN
Sbjct: 113 LTHLPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNN 171

Query: 115 KLYEL 119
           +L  L
Sbjct: 172 QLTSL 176

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 37/135 (27%)

Query: 2   LDLSDCKSLKSLPAEISNLE-----------------SLKKLNLSGCSKLKRLPEFSSAG 44
           L+++    L SLP   ++LE                 SLK L++    +L  LPE     
Sbjct: 85  LEITQNA-LISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNN-QLTMLPE--LPA 140

Query: 45  NIEEI-CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEAL----NSLYAKG 99
            +E I     +L  LP     L+ L V N      +  LP    +LEAL    N L    
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEVLSVRNN----QLTFLPELPESLEALDVSTNLL---- 192

Query: 100 IATTEVPSSVVRLNN 114
                +P+  VR ++
Sbjct: 193 ---ESLPAVPVRNHH 204

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 7e-07
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 28/109 (25%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCK-------- 53
           L + + + L  LP    +LE    L++S    L+ LP                       
Sbjct: 165 LSVRNNQ-LTFLPELPESLE---ALDVSTN-LLESLPA--------VPVRNHHSEETEIF 211

Query: 54  ------RLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
                 R+  +P +I  L     + L+    +     E  + +     Y
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQPDY 259

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 10  LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLK 69
                +     E       +    +  L E       E       L SLP ++     + 
Sbjct: 26  YADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP--PQIT 83

Query: 70  VLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLN---NKLYEL 119
           VL +     +  LP    +LE L++   +     E+P+S+  L+   N+L  L
Sbjct: 84  VLEITQN-ALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTML 135

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 36/185 (19%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGC--------SKLKRLPEFSSAGN----IEEI 49
           L L   + + ++   ++ L +L  L L+          S LK L   +   N    I  +
Sbjct: 270 LKLGANQ-ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV 327

Query: 50  CGCKRLKSL---------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI 100
               +L+ L          SS+  L ++  L+      I  L   L NL  +  L     
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN-QISDLT-PLANLTRITQLGLNDQ 385

Query: 101 ATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKL 160
           A T  P +     +    +        +    L+ P T+S            D++ N   
Sbjct: 386 AWTNAPVNYKANVSIPNTVK-------NVTGALIAPATIS----DGGSYTEPDITWNLPS 434

Query: 161 DRKEV 165
              EV
Sbjct: 435 YTNEV 439

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L L+  + LK +   +++L +L  L+L+   ++  L   S    + E+  G  ++ ++ S
Sbjct: 226 LSLNGNQ-LKDIGT-LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNI-S 281

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
            +  L +L  L L+    ++ +   + NL+ L  L 
Sbjct: 282 PLAGLTALTNLELNEN-QLEDIS-PISNLKNLTYLT 315

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L  ++ + +  +   +  L +L +L+L+G  +LK +   +S  N+ ++     ++ +L  
Sbjct: 204 LIATNNQ-ISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLA- 259

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELS 120
            +  L  L  L L     I  +   L  L AL +L        ++    +     L  L+
Sbjct: 260 PLSGLTKLTELKLGAN-QISNIS-PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315

Query: 121 SDRSRRGDKQMGLLLPITLSIDGL-HMTDLRHFDLSGN 157
              +            I+  I  +  +T L+      N
Sbjct: 316 LYFNN-----------IS-DISPVSSLTKLQRLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L       +KS+   +  L +L ++N S   +L  +    +   + +I     ++  +  
Sbjct: 51  LQADRLG-IKSIDG-VEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADIT- 106

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
            +  L +L  L L     I  +   L NL  LN L 
Sbjct: 107 PLANLTNLTGLTLFNN-QITDID-PLKNLTNLNRLE 140

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLP 59
            LD+S  K +  +   ++ L +L+ L  +   ++  +       N++E+     +LK + 
Sbjct: 181 RLDISSNK-VSDISV-LAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQLKDIG 237

Query: 60  SSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
            ++  L +L  L+L     I  L   L  L  L  L 
Sbjct: 238 -TLASLTNLTDLDLANN-QISNLA-PLSGLTKLTELK 271

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 2  LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
            ++    +  +    + L    K  L     +      +    +  +      +KS+  
Sbjct: 6  ATITQDTPINQIFT-DTALAEKMKTVLGKT-NVTDTVSQTDLDQVTTLQADRLGIKSI-D 62

Query: 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           +  L +L  +N      +  +   L NL  L  + 
Sbjct: 63 GVEYLNNLTQINFSNN-QLTDIT-PLKNLTKLVDIL 96

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 22/167 (13%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
              +  +   +       L +L  L+      +  +        + ++ C    + +L  
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNITTLD- 80

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELS 120
            + +  +L  L  D    +  L   +  L  L  L       T++  S    N  L  L+
Sbjct: 81  -LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLN 133

Query: 121 SDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRG 167
             R+            +T  ID  H T L   D   N K+ + +V  
Sbjct: 134 CARNT-----------LT-EIDVSHNTQLTELDCHLNKKITKLDVTP 168

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 30/165 (18%)

Query: 2   LDLSDCKSLKSLPA--------EISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGC 52
           LD++    L +L          ++S  + L +LN      + +L   +    +  + C  
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN-NITKLD-LNQNIQLTFLDCSS 221

Query: 53  KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRL 112
            +L  +   +  L  L   +      + +L   +  L  L +L+       E+  +    
Sbjct: 222 NKLTEID--VTPLTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQTDLLEIDLTH--- 273

Query: 113 NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
           N +L    ++                  +D  H T L   D    
Sbjct: 274 NTQLIYFQAEG-----------CRKIKELDVTHNTQLYLLDCQAA 307

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 32/169 (18%)

Query: 2   LDLSDCKSLKSL---------PAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CG 51
           +D+S    L  L           +++    L  L+ S   K+  L   S    +  + C 
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCD 199

Query: 52  CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVR 111
              +  L   + +   L  L+      + ++   +  L  L          TE+  S   
Sbjct: 200 TNNITKLD--LNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNPLTELDVS--- 251

Query: 112 LNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKL 160
             +KL  L   +             +   ID  H T L +F   G  K+
Sbjct: 252 TLSKLTTLHCIQ-----------TDLL-EIDLTHNTQLIYFQAEGCRKI 288

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L       L  +   +++   L      GC K+K L + +    +  + C    +  L  
Sbjct: 259 LHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLDCQAAGITELD- 313

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELS 120
            + +   L  L L+    + +L   + +   L SL        +  S            +
Sbjct: 314 -LSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEA 369

Query: 121 SDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
             ++    K+      +T+++           D  GN
Sbjct: 370 EGQTITMPKETLTNNSLTIAV------SPDLLDQFGN 400

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 24/116 (20%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGC--------SKLKRLPEFSSAGN----IEEI 49
           L ++  K + S+   I  L +L+ LNL+G         S L +L       N    I  +
Sbjct: 49  LVVAGEK-VASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISAL 106

Query: 50  CGCKRLKSL---------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
                L+ L          S +  L  +  LNL    N+      L N+  LN L 
Sbjct: 107 QNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLT 161

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS---------AGN----IEE 48
           L L++   +  +   ++NL  +  LNL     L  L   S+           +    +  
Sbjct: 115 LYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP 172

Query: 49  ICGCKRLKSL---------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           I     L SL          S +  L SL          I  +   + N+  LNSL 
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLK 227

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 23/116 (19%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGC--------SKLKRLPEFSSAGN----IEEI 49
                 + +  +   ++N+  L  L +           + L +L       N    I  +
Sbjct: 204 FTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAV 261

Query: 50  CGCKRLKSL---------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
               +LK L          S +  L  L  L L+      +    +G L  L +L+
Sbjct: 262 KDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 8  KSLKSLPAEI------SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEIC-GCKRLKSLPS 60
           +L +LPA I      ++L    +  L     +  +       +I ++    +++ S+  
Sbjct: 3  ATLATLPAPINQIFPDADLAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGEKVASIQ- 60

Query: 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           I  L +L+ LNL+G   I  +   L NL  L +LY
Sbjct: 61 GIEYLTNLEYLNLNGN-QITDIS-PLSNLVKLTNLY 94

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 22/109 (20%)

Query: 2   LDLSDCK--SLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI-EEICGCKRLKSL 58
           LDLS         +P+ ++NL  L  L + G + L         G I   I    +L  L
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--------VGPIPPAIAKLTQLHYL 106

Query: 59  -----------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
                      P  + ++K+L  L+    +    LP  + +L  L  + 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 22/104 (21%)

Query: 2   LDLSDCKSLK-SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI-EEICGCKRLKSL- 58
           L +    +L   +P  I+ L  L  L ++  +        S  G I + +   K L +L 
Sbjct: 81  LYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-------VS--GAIPDFLSQIKTLVTLD 131

Query: 59  ----------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEAL 92
                     P SI  L +L  +  DG      +P   G+   L
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 23/109 (21%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI-EEICGCKRLKSL- 58
            L ++      ++P  +S +++L  L+ S  +        S  G +   I     L  + 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-------LS--GTLPPSISSLPNLVGIT 155

Query: 59  ----------PSSICKLKSL-KVLNLDGCSNIQKLPHELGNLEALNSLY 96
                     P S      L   + +       K+P    NL  L  + 
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 20/83 (24%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           +DLS             + ++ +K++L+  S        +   ++ ++   K L  L   
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-------LA--FDLGKVGLSKNLNGLDLR 252

Query: 59  --------PSSICKLKSLKVLNL 73
                   P  + +LK L  LN+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNV 275

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 43/191 (22%), Positives = 60/191 (31%), Gaps = 49/191 (25%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSG-----------CSKLKRLPEFSS---AGNI- 46
           LD+S  K        IS    LK LN+S               L+ L   +     G I 
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-SLAENKFTGEIP 286

Query: 47  EEICG-CKRLKSL-----------PSSICKLKSLKVLNLDGCSNIQ-KLPHE-LGNLEAL 92
           + + G C  L  L           P        L+ L L    N   +LP + L  +  L
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGL 345

Query: 93  NSLYA-----KGIATTEVPSSVVRLNNKLYELS-SDRSRRGDKQMGLLLPITLSIDGLHM 146
             L        G    E+P S+  L+  L  L  S  +  G        PI  ++     
Sbjct: 346 KVLDLSFNEFSG----ELPESLTNLSASLLTLDLSSNNFSG--------PILPNLCQNPK 393

Query: 147 TDLRHFDLSGN 157
             L+   L  N
Sbjct: 394 NTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 5e-07
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 1   MLDLSDCKSLK-SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI-EEICGCKRLK-- 56
            L L +       +P  +SN   L  L+LS           S  G I   +    +L+  
Sbjct: 398 ELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNY-------LS--GTIPSSLGSLSKLRDL 447

Query: 57  ---------SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
                     +P  +  +K+L+ L LD      ++P  L N   LN + 
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 52/182 (28%)

Query: 2   LDLSDC---KSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL 58
           +DLS         ++ + + +L  L+ L LS           +  G++        L SL
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH-------IN--GSVSGFKCSASLTSL 105

Query: 59  -------------PSSICKLKSLKVLNLDGCSNIQKLPHE----LGNLEAL----NSLYA 97
                         +S+     LK LN+   +            L +LE L    NS+  
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-- 163

Query: 98  KGIATTEVPSSVVRLNN--KLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155
               +       V  +   +L  L+   ++           I+  +D     +L   D+S
Sbjct: 164 ----SGANVVGWVLSDGCGELKHLAISGNK-----------ISGDVDVSRCVNLEFLDVS 208

Query: 156 GN 157
            N
Sbjct: 209 SN 210

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 33/135 (24%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           L +S  K    +   +S   +L+ L++S  +       FS    I  +  C  L+ L   
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNN-------FS--TGIPFLGDCSALQHLDIS 231

Query: 59  --------PSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEAL----NSLYAKGIATTEV 105
                     +I     LK+LN+     +  +P   L +L+ L    N        T E+
Sbjct: 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF------TGEI 285

Query: 106 PSSVVRLNNKLYELS 120
           P  +    + L  L 
Sbjct: 286 PDFLSGACDTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 27/109 (24%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI-EEICGCKRLKSL-- 58
            +++             N  S+  L++S           S  G I +EI     L  L  
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-------LS--GYIPKEIGSMPYLFILNL 663

Query: 59  ---------PSSICKLKSLKVLNLDGCSNIQ---KLPHELGNLEALNSL 95
                    P  +  L+ L +L+L   S+ +   ++P  +  L  L  +
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDL---SSNKLDGRIPQAMSALTMLTEI 709

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 20/108 (18%)

Query: 2   LDLSDCKSLKSLPAEISNL-ESLKKLNLSGCS------------KLKRLPEFSSAGNIEE 48
           LDLS  +    LP  ++NL  SL  L+LS  +                L E     N   
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--G 405

Query: 49  ICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
             G      +P ++     L  L+L        +P  LG+L  L  L 
Sbjct: 406 FTG-----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 11/98 (11%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 2   LDLSDCKSLKSLP--AEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSL 58
           LDL   + + ++      ++ ++L+ LNL     +  +        ++ +     +L  +
Sbjct: 149 LDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
                    +  ++L     +  +   L   + L    
Sbjct: 207 GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFD 243

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-- 58
             ++D   LK   A +  +  ++K+L+LSG   L ++          ++    +L+ L  
Sbjct: 15  EKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISA-------ADLAPFTKLELLNL 65

Query: 59  -------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALN 93
                     +  L +L+ L+L+    +Q+L     ++E L+
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNN-YVQELL-VGPSIETLH 105

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 30/124 (24%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           LDLS  K L  +  E  +   +  ++L                         +L  +  +
Sbjct: 196 LDLSSNK-LAFMGPEFQSAAGVTWISLRNN----------------------KLVLIEKA 232

Query: 62  ICKLKSLKVLNLDG----CSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLY 117
           +   ++L+  +L G    C  ++         + + ++  + +      +        L 
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDF---FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 118 ELSS 121
              +
Sbjct: 290 HYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 12 SLPAEISNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC-GCKRLKSLP-SSICKLKS 67
          ++     N    K   ++    LK+       SA N++E+      L  +  + +     
Sbjct: 1  AIHEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 68 LKVLNLDGCSNIQKLPHELGNLEALNSLY 96
          L++LNL     + +   +L +L  L +L 
Sbjct: 60 LELLNLSSN-VLYETL-DLESLSTLRTLD 86

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 61/194 (31%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           LDL+    L  LP+ +  L +LKKL LS   K + L + S             L  L   
Sbjct: 283 LDLTATH-LSELPSGLVGLSTLKKLVLSAN-KFENLCQIS-------ASNFPSLTHLSIK 333

Query: 59  ---------PSSICKLKSLKVLNLDGC--SNIQKLPHELGNLEALNSLYAKGIATTEVPS 107
                       +  L++L+ L+L             +L NL  L SL            
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN----------- 382

Query: 108 SVVRL-NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVR 166
               L  N+   L ++                 +        L   DL+   +L  K+ +
Sbjct: 383 ----LSYNEPLSLKTE-----------------AFKEC--PQLELLDLAFT-RLKVKDAQ 418

Query: 167 GIFED--ALQDIQL 178
             F++   L+ + L
Sbjct: 419 SPFQNLHLLKVLNL 432

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/182 (14%), Positives = 51/182 (28%), Gaps = 29/182 (15%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI-CGCKRLKS 57
           L L+    L  +     S  ++LK L       +  +      +   +E +  G   + S
Sbjct: 86  LVLTANP-LIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 58  LP-SSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEALN--SLYAKGIATTEVPSSVVRLN 113
           +        + LKVL+      I  L  E + +L+     SL   G     +        
Sbjct: 144 IKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 114 N--KLYELSSDRSRRGDKQMGLLLPITL----------------SIDGLHMTDLRHFDLS 155
               L    +       K +      +L                  +GL    +   +L 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 156 GN 157
            +
Sbjct: 263 KH 264

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 23/108 (21%)

Query: 2   LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-- 58
           L+ S    L ++     S L +L  L+L+ C ++  + E       +      RL +L  
Sbjct: 38  LEFSFNV-LPTIQNTTFSRLINLTFLDLTRC-QIYWIHE-------DTFQSQHRLDTLVL 88

Query: 59  ---------PSSICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLY 96
                     +++   K+LK L       I  +    L N + L SLY
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLY 135

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 39/174 (22%)

Query: 2   LDLSDCKSLKSLPAE--ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL- 58
           LDL+  + LK   A+    NL  LK LNLS    L    E       +   G   L+ L 
Sbjct: 405 LDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-------QLFDGLPALQHLN 455

Query: 59  -------------PSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTE 104
                         +S+  L  L++L L  C ++  +      +L+ +N +       T 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTS 514

Query: 105 VPSSVVRLNNKLY-ELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
                +     +Y  L+S+        + ++LP  L      ++  R  +L  N
Sbjct: 515 SSIEALSHLKGIYLNLASN-------HISIILPSLLP----ILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 25/110 (22%), Positives = 35/110 (31%), Gaps = 23/110 (20%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-- 58
           L+LS  +   SL  E       L+ L+L+   +LK     S             LK L  
Sbjct: 381 LNLSYNE-PLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSP------FQNLHLLKVLNL 432

Query: 59  ---------PSSICKLKSLKVLNLDGCS---NIQKLPHELGNLEALNSLY 96
                          L +L+ LNL G        +  + L  L  L  L 
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 2   LDLSDCKSLKSLPAEISN--LESLKKLNLSGCSKLKRLPEFSSAG----NIEEI-CGCKR 54
           L+    ++L  +   + N  ++SL           + +      G    ++E I      
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD-DEDISPAVFEGLCEMSVESINLQKHY 265

Query: 55  LKSL-PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
             ++  ++      L+ L+L    ++ +LP  L  L  L  L 
Sbjct: 266 FFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLV 307

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 9e-08
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L L + K +  +   +S L  L  L+L    ++  +   +    ++ +      +  L  
Sbjct: 136 LYLGNNK-ITDITV-LSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDL-R 191

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           ++  LK+L VL L     + K  +   NL   N++ 
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 1e-07
 Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 46/192 (23%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGC--------SKLKRLPEFSSAGN----IEEI 49
            +L   KS+       + L S+ ++  +            L  + +    GN    I+ +
Sbjct: 26  DNLKK-KSVTDAV-TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPL 83

Query: 50  CGCKRLKSLP---------SSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG- 99
              K L  L          SS+  LK LK L+L+    I  +   L +L  L SLY    
Sbjct: 84  TNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN-GISDING-LVHLPQLESLYLGNN 141

Query: 100 -IATTEVPSSVVRL------NNKLYELSSDRSRRGDKQMGLLLPITLS------IDGL-H 145
            I    V S + +L      +N++ ++           +  L  + LS      +  L  
Sbjct: 142 KITDITVLSRLTKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSKNHISDLRALAG 195

Query: 146 MTDLRHFDLSGN 157
           + +L   +L   
Sbjct: 196 LKNLDVLELFSQ 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 24/145 (16%)

Query: 17  ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPSSICKLKSLKVLNLDG 75
                   K NL     +      +   +I++I      +KS+   I  L ++  L L+G
Sbjct: 17  DDAFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG 74

Query: 76  CSNIQKLPHELGNLEALNSLYAKG--IATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL 133
              +  +   L NL+ L  L+     I        + +L   L  L  +           
Sbjct: 75  N-KLTDIK-PLTNLKNLGWLFLDENKIKDLSSLKDLKKL-KSLS-LEHNG---------- 120

Query: 134 LLPITLSIDGL-HMTDLRHFDLSGN 157
              I+  I+GL H+  L    L  N
Sbjct: 121 ---IS-DINGLVHLPQLESLYLGNN 141

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 17/187 (9%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEIC-----GCKRL 55
           LDLS    L +L +     L SL  LNL G    K L E S   ++ ++           
Sbjct: 105 LDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 56  KSLPSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTEVPSSVVRLN 113
             +       L  L+ L +D   ++Q    + L +++ ++ L         +    V + 
Sbjct: 163 TKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221

Query: 114 NKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFED-- 171
           + +  L    +         L     +   +     R+  ++        +V  +     
Sbjct: 222 SSVECLELRDTDLDTFHFSELSTGETN-SLIKKFTFRNVKITDE---SLFQVMKLLNQIS 277

Query: 172 ALQDIQL 178
            L +++ 
Sbjct: 278 GLLELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 15/133 (11%)

Query: 1   MLDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE-ICGCKRLK 56
           +L + +  +   +  +  + L  L++L +     L+        S  N+   I   K+  
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 57  SLPSSI-CKLKSLKVLNLDG----CSNIQKLPH----ELGNLEALNSLYAKGIATTEVPS 107
            L         S++ L L        +  +L       L       ++     +  +V  
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 108 SVVRLNNKLYELS 120
            + +++  L EL 
Sbjct: 272 LLNQISG-LLELE 283

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 19/159 (11%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLP 59
           + L++   +  L   I    ++K L ++           S   N+E   I G        
Sbjct: 49  ITLANIN-VTDLTG-IEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKI 105

Query: 60  SSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYEL 119
            ++  L SL +L++   ++   +  ++  L  +NS+             +  L   L  L
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE-LKSL 164

Query: 120 SSDRSRRGDKQMGLLLPITLSIDGL-HMTDLRHFDLSGN 157
           +                +     G+     L        
Sbjct: 165 NIQFDG-----------VH-DYRGIEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 24/99 (24%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS 60
           +LD+S      S+  +I+ L  +  ++LS    +                      +   
Sbjct: 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI----------------------TDIM 153

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG 99
            +  L  LK LN+     +      + +   LN LYA  
Sbjct: 154 PLKTLPELKSLNIQFD-GVHDYRG-IEDFPKLNQLYAFS 190

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 20/169 (11%), Positives = 49/169 (28%), Gaps = 9/169 (5%)

Query: 2   LDLSDCKSLKSLP--AEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSL 58
           LDL   + + ++      ++ ++L+ LNL     +  +        ++ +     +L  +
Sbjct: 149 LDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFM 206

Query: 59  PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG--IATTEVPSSVVRLNNKL 116
                    +  ++L     +  +   L   + L     +G       +     +     
Sbjct: 207 GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 117 Y-ELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKE 164
                + +   G  +    +P           DL          L RKE
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 41/174 (23%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           LDLS  K L  +  E  +   +  ++L                         +L  +  +
Sbjct: 196 LDLSSNK-LAFMGPEFQSAAGVTWISLRNN----------------------KLVLIEKA 232

Query: 62  ICKLKSLKVLNLDG----CSNIQKLPHELGNLE-----ALNSLYAKGIATTEVPSSVVRL 112
           +   ++L+  +L G    C  ++    +   ++      +  L  +      VP+     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 113 NNKLYELSSDRSRRGDKQMGLLLPIT---------LSIDGLHMTDLRHFDLSGN 157
                +L +  + R          +          L  +  +    R  D    
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-- 58
             ++D   LK   A +  +  ++K+L+LSG   L ++          ++    +L+ L  
Sbjct: 15  EKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISA-------ADLAPFTKLELLNL 65

Query: 59  -------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALN 93
                     +  L +L+ L+L+    +Q+L     ++E L+
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNN-YVQELL-VGPSIETLH 105

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 37/170 (21%), Positives = 55/170 (32%), Gaps = 28/170 (16%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           LDLS C+          +L  L  L L+G   ++ L             G   L+ L   
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLAL-------GAFSGLSSLQKLVAV 108

Query: 59  --------PSSICKLKSLKVLNLDGCSNIQ--KLPHELGNLEALNSLYAKGIATTEVPSS 108
                      I  LK+LK LN+     IQ  KLP    NL  L  L         +  +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 109 VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNF 158
            +R+ +++       +   D  +  +  I           L    L  NF
Sbjct: 168 DLRVLHQM----PLLNLSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNF 211

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 32/170 (18%), Positives = 52/170 (30%), Gaps = 55/170 (32%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           LDLS             +   L+ L+LS C  ++ + +               L +L   
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIED-------GAYQSLSHLSTLILT 84

Query: 59  --------PSSICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLYAKGIATTEVPSSV 109
                     +   L SL+ L      N+  L    +G+L+ L  L              
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELN------------- 130

Query: 110 VRL-NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNF 158
             + +N +                  LP   S    ++T+L H DLS N 
Sbjct: 131 --VAHNLI--------------QSFKLPEYFS----NLTNLEHLDLSSNK 160

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 20/107 (18%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           LD+S   +  +     + L SL+ L ++G S       F      +     + L  L   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-------FQENFLPDIFTELRNLTFLDLS 478

Query: 59  --------PSSICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLY 96
                   P++   L SL+VLN+    N   L       L +L  L 
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 55/182 (30%)

Query: 2   LDLSDCK--SLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL- 58
           LDLS                  SLK L+LS    +  +             G ++L+ L 
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMS--------SNFLGLEQLEHLD 402

Query: 59  -----------PSSICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLYA-----KGIA 101
                       S    L++L  L++    + +         L +L  L       +   
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 102 TTEVPSSVVRL------NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS 155
             ++ + +  L        +L +LS                   + + L    L+  ++S
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPT-----------------AFNSLSS--LQVLNMS 502

Query: 156 GN 157
            N
Sbjct: 503 HN 504

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 20/86 (23%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-- 58
           L ++     ++   +I + L +L  L+LS C +L++L                 L+ L  
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-------TAFNSLSSLQVLNM 501

Query: 59  ---------PSSICKLKSLKVLNLDG 75
                          L SL+VL+   
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEIC-GCKRLKSLP 59
           LDL + K L+ +       L +LK LNL  C  +K +P  +    +EE+         + 
Sbjct: 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIR 234

Query: 60  S-SICKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTEVPSSVVRLNNKLY 117
             S   L SLK L +     +  +       L +L  L       + +P  +      L 
Sbjct: 235 PGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293

Query: 118 ELS 120
           EL 
Sbjct: 294 ELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE--ICGCKRLK 56
           L+L D   L  +P+     L  L++L L     ++ +P   F+   ++    +   K+L+
Sbjct: 128 LELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE 185

Query: 57  SLPSSI-CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
            +       L +LK LNL  C NI+ +P+ L  L  L  L 
Sbjct: 186 YISEGAFEGLFNLKYLNLGMC-NIKDMPN-LTPLVGLEELE 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC-GCKRLKS 57
           L L     ++ +     + L SL  L L     L  +P   F     + E+      ++S
Sbjct: 104 LQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIES 161

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLY 96
           +PS    ++ SL  L+L     ++ +       L  L  L 
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSK--------LKRLPEFSSAGNIEEICGCK 53
           +D +D   +      +  L+ ++K+ L  C          L +L     +    EI  C 
Sbjct: 66  IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125

Query: 54  RL--KSLPSSICKLKSLKVLNLDGCSNI 79
            +  K +  ++   ++LK L L     +
Sbjct: 126 NVTDKGI-IALHHFRNLKYLFLSDLPGV 152

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE---FSSAGNIEEIC-GCKRLKS 57
           LDLS    + ++ +    LE L+ L+      LK++ E   F S  N+  +       + 
Sbjct: 378 LDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 58  LPSSIC-KLKSLKVLNLDGCSNIQK--LPHELGNLEALNSLY 96
             + I   L SL+VL + G  + Q+  LP     L  L  L 
Sbjct: 436 AFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLP----EFSSAGNIEEI-CGCKRLK 56
           L  +  K   +  +E+ +L SL+ L+LS    L              +++ +      + 
Sbjct: 330 LTFTSNK-GGNAFSEV-DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 57  SLPSSICKLKSLKVLNLDGCSNIQKLPHE--LGNLEALNSLY 96
           ++ S+   L+ L+ L+     N++++       +L  L  L 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLD 427

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC-GCKRLKS 57
           LDLS    L+ L +    +   L+ L+LS C +++ + +  + S  ++  +      ++S
Sbjct: 33  LDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLY 96
           L       L SL+ L      N+  L +  +G+L+ L  L 
Sbjct: 91  LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELN 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 31/117 (26%)

Query: 6   DC--KSLKSLPAEI----------------------SNLESLKKLNLSGCSKLKRLPEFS 41
           +C  ++L +LP ++                           L +LNL    +L +L    
Sbjct: 16  NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDG 74

Query: 42  SAGNIEEI-CGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLP----HELGNLEALN 93
           +   +  +     +L+SLP     L +L VL++     +  LP      LG L+ L 
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELY 130

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 35/177 (19%), Positives = 49/177 (27%), Gaps = 23/177 (12%)

Query: 2   LDLSDCKSL--KSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLP 59
           L LS C+      L A  +   +LK+L+L        + + S             L SL 
Sbjct: 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRES----DVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 60  SSICK--------------LKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEV 105
            S                   +LK L L+    ++KL   L     L  L   G      
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250

Query: 106 PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDR 162
           P     L+  L      R   G        P  L       + L   +LS       
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAV---PAYLPAVYSVCSRLTTLNLSYATVQSY 304

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 17/107 (15%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           L L+    L+ L   +     L++L   G +   R   +S       + GCK L+ L   
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA--LSGCKELRCLSGF 273

Query: 59  --------PSSICKLKSLKVLNLDGCS----NIQKLPHELGNLEALN 93
                   P+       L  LNL   +    ++ KL  +   L+ L 
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 31/145 (21%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           L LS   + K      +  + ++ L+++           S  G    + GC  L+ L   
Sbjct: 437 LSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-------DSDLGMHHVLSGCDSLRKLEIR 489

Query: 59  ---------PSSICKLKSLKVLNLDGCS----NIQKLPHELGNL--EALNSLYAKGIATT 103
                     ++  KL++++ L +  CS      + L  ++  L  E ++   A      
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPE 549

Query: 104 EVPSSVVRLNNKLYELSSDRSRRGD 128
             P        +++   +    R D
Sbjct: 550 SCPVE------RVFIYRTVAGPRFD 568

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 50/179 (27%)

Query: 2   LDLSDCKSLKSL-PAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-- 58
           L+L+  + L+ L  A  +    L  L++     + +L         E       LK L  
Sbjct: 30  LNLTHNQ-LRRLPAANFTRYSQLTSLDVGFN-TISKLEP-------ELCQKLPMLKVLNL 80

Query: 59  ---------PSSICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLYAKG--IATTEVP 106
                      +     +L  L+L    +IQK+  +     + L +L      +++T++ 
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 107 S-----SVVRL---NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
           +     ++  L   NNK+  L S+                  +D    + L+  +LS N
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSE-----------------ELDIFANSSLKKLELSSN 181

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 41/178 (23%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI--CGCKRLKS 57
           L L      K         ++L  L+LS    L            N++E+     K +++
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNK-IQA 159

Query: 58  LPS---SICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLY----------AKGIATT 103
           L S    I    SLK L L     I++  P     +  L  L+           + +   
Sbjct: 160 LKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 104 EVPSSVVRL---NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNF 158
              +S+  L   N++L   S+                  +  GL  T+L   DLS N 
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNT-----------------TFLGLKWTNLTMLDLSYNN 259

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 51/171 (29%)

Query: 2   LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKRLPEFSSAGNI-EEICGCKRLKSL- 58
           LDLS+   + ++  + +  LE L+ L+L     L RL + ++ G     + G   L  L 
Sbjct: 485 LDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 59  ----------PSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTEVPS 107
                           L  LK+++L    N+  LP     N  +L SL            
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLN----------- 590

Query: 108 SVVRL-NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
               L  N +  +                     + G    +L   D+  N
Sbjct: 591 ----LQKNLITSVEK------------------KVFGPAFRNLTELDMRFN 619

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 29/172 (16%), Positives = 48/172 (27%), Gaps = 46/172 (26%)

Query: 2   LDLSDCKSLKSLPAEIS---NLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL 58
           L L++ +   SL  ++       S++ L+LS    L      +  G          L  L
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLG-----LKWTNLTML 253

Query: 59  -----------PSSICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLYAKGIATTEVP 106
                        S   L  L+   L+   NIQ L  H L  L  +  L           
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLN---------- 302

Query: 107 SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNF 158
                L     + S          +  +   +       +  L H ++  N 
Sbjct: 303 -----LKRSFTKQSI-----SLASLPKIDDFSFQ----WLKCLEHLNMEDND 340

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 43/157 (27%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
             L            +  L +++ LNL      + +    S  ++ +I           S
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI----SLASLPKID--------DFS 324

Query: 62  ICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELS 120
              LK L+ LN++   +I  +  +    L  L  L                       LS
Sbjct: 325 FQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLS----------------------LS 361

Query: 121 SDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
           +           L      +   L  + L   +L+ N
Sbjct: 362 NSF-------TSLRTLTNETFVSLAHSPLHILNLTKN 391

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE---FSSAGNIEE--ICGCKRLK 56
           LDLS    + ++ +    LE L+ L+      LK++ E   F S  N+    I      +
Sbjct: 83  LDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTR 139

Query: 57  SLPSSICK-LKSLKVLNLDGCSNIQKLPHE----LGNLEALN 93
              + I   L SL+VL + G S  +    +    L NL  L+
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE--ICGCKRLK 56
           LD+S     +     I + L SL+ L ++G S  +      F+   N+    +  C +L+
Sbjct: 131 LDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLE 188

Query: 57  SLPSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLY 96
            L  +    L SL+VLN+    N   L       L +L  L 
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 46/243 (18%), Positives = 70/243 (28%), Gaps = 63/243 (25%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNL-SGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS 60
           L+L +C S +++   +  L      N  S       +        I  I     L+ L  
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-----RIHSI--QAELRRLLK 239

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLY-EL 119
           S      L V  L    N+Q          A N L  K + TT        L+      +
Sbjct: 240 SKPYENCLLV--LL---NVQNAKA----WNAFN-LSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 120 SSDRSRRG---DKQMGLLLPITLSIDGLHMTDLRHFDLSGN-FKLDRKEVRGIFEDALQD 175
           S D        D+   LLL            DL    L+ N  +L       I  ++++D
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRL------SIIAESIRD 339

Query: 176 IQLMAAARWKQVREEGY-----FLEKC-----------GY---VIFPGN-EIPK------ 209
                 A W   +          +E              +    +FP +  IP       
Sbjct: 340 ----GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 210 WFK 212
           WF 
Sbjct: 396 WFD 398

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 23/162 (14%), Positives = 53/162 (32%), Gaps = 13/162 (8%)

Query: 2   LDLSDCKSLKSLP--AEISNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI-CGCKRLK 56
           L+L      ++L   +   NL +L+ L +        +    F+   ++ E+      L+
Sbjct: 103 LNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 57  SLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNK 115
           +  S S+  ++ +  L L    +   L      L ++  L  +         S + ++  
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 116 LYELSSDRSRRGD------KQMGLLLPITLSIDGLHMTDLRH 151
              +     R          ++  LL   L +  +   D   
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 36/167 (21%)

Query: 2   LDLSDCK--SLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGNIEEI-CGCKRLKS 57
           L LS     S++     +  L++L  L++S       +P+       +  +      ++ 
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRV 424

Query: 58  LPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEAL----NSLYAKGIATTEVPSSVVRL- 112
           + + I   ++L+VL++    N+      L  L+ L    N L  K +    +   ++ + 
Sbjct: 425 VKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQELYISRNKL--KTLPDASLFPVLLVMK 479

Query: 113 --NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
              N+L  +                      D L  T L+   L  N
Sbjct: 480 ISRNQLKSVPDG-----------------IFDRL--TSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 2   LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC--GCKRLK 56
           LDLS  K +  +    +    +L+ L L    ++  +    F S G++E +       L 
Sbjct: 31  LDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLS 87

Query: 57  SLPSSIC-KLKSLKVLNLDGCSNIQKLPH--ELGNLEALNSLY 96
           SL SS    L SLK LNL G    Q L       NL  L +L 
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 65/196 (33%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI---------- 49
           L +        L    S LE +K++ +   SK+  +P        ++E +          
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 50  --------CGCKRLKSL-------------PSSICKLKSLKVLNLDGCSNIQKLPHELGN 88
                        L++L                +  LK+L  L++        +P     
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQW 408

Query: 89  LEALNSLYAKG----IATTEVPSSVVRL---NNKLYELSSDRSRRGDKQMGLLLPITLSI 141
            E +  L        +  T +P ++  L   NN L   S                     
Sbjct: 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL-------------------- 448

Query: 142 DGLHMTDLRHFDLSGN 157
               +  L+   +S N
Sbjct: 449 ---FLPRLQELYISRN 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL--- 58
           LDLS C+           L  L  L L+G   ++               G   L++L   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSP-------GSFSGLTSLENLVAV 112

Query: 59  --------PSSICKLKSLKVLNLDGCSNIQ--KLPHELGNLEALNSLY 96
                      I +L +LK LN+     I   KLP    NL  L  + 
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 57/171 (33%)

Query: 2   LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-- 58
           +DLS    LK L +   SN   L+ L+LS C +++ + + +         G   L +L  
Sbjct: 37  IDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKA-------WHGLHHLSNLIL 87

Query: 59  ---------PSSICKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVPSS 108
                    P S   L SL+ L       +  L    +G L  L  L             
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLN------------ 134

Query: 109 VVRL-NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNF 158
              + +N ++                 LP   S    ++T+L H DLS N+
Sbjct: 135 ---VAHNFIHSCK--------------LPAYFS----NLTNLVHVDLSYNY 164

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 51/167 (30%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           LDLS       + A    LE L+ L+    S LKR+ E                    S+
Sbjct: 381 LDLSFNG-AIIMSANFMGLEELQHLDFQH-STLKRVTE-------------------FSA 419

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY-----AKGIATTEVPSSVVRL---- 112
              L+ L  L++   +           L +LN+L       K    + V ++   L    
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479

Query: 113 --NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
               +L ++S                     D L    L+  ++S N
Sbjct: 480 LSKCQLEQISWG-----------------VFDTL--HRLQLLNMSHN 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 23/168 (13%), Positives = 49/168 (29%), Gaps = 17/168 (10%)

Query: 2   LDLSDCK-SLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAG-------NIEEICGCK 53
           L+++        LPA  SNL +L  ++LS    ++ +              N+       
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 54  RLKSLPSSICKLKSLKVLNLDGCSNIQKLP----HELGNLEALNSLYAKGIATTEVPSSV 109
            +  +     +   L  L L G  N   +       L  L     +  +      +    
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 110 VRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
             +   L +++ D  R           +        + ++    L+G 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH----CLANVSAMSLAGV 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 10/125 (8%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC--GCKRLK 56
           LD+S     K     I   L SL  L ++G S         F++  N+  +    C+ L+
Sbjct: 429 LDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LE 486

Query: 57  SLPSSICK-LKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTEVPSSVVRLNN 114
            +   +   L  L++LN+    N+  L       L +L++L             +     
Sbjct: 487 QISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 115 KLYEL 119
            L   
Sbjct: 546 SLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 30/158 (18%), Positives = 48/158 (30%), Gaps = 39/158 (24%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCK-RLKSLPS 60
             L+          +   L ++  ++L+G   +K L +       + +   + +LK  P+
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRL-NNKLYEL 119
               L  LK L L    N   +  +   L +L+ L                L  N L   
Sbjct: 325 L--DLPFLKSLTLTM--NKGSISFKKVALPSLSYLD---------------LSRNALSFS 365

Query: 120 SSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
                               S   L    LRH DLS N
Sbjct: 366 GCC-----------------SYSDLGTNSLRHLDLSFN 386

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 25/142 (17%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE--ICGCKRLK 56
           +++S    L+ + A++ SNL  L ++ +   + L  +    F +  N++   I     +K
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IK 117

Query: 57  SLPSSI-CKLKSLKVLNLDGCSNIQKLPHEL-----GNLEALNSLYAKGIATTEVPSSVV 110
            LP           +L++    NI  +              L  L   GI   E+ +S  
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW-LNKNGI--QEIHNSAF 174

Query: 111 RL----------NNKLYELSSD 122
                       NN L EL +D
Sbjct: 175 NGTQLDELNLSDNNNLEELPND 196

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 36/189 (19%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE----FSSAGNIEEICGCKRLKS 57
           L+  +    + L       + LK+L +   +  + + +     S  G I    GC+ L+ 
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382

Query: 58  L---------------PSSICKLKSLKVLNLDGCSNIQKLPHELG---------NLEALN 93
           +                + +  L   +++ LD    I  LP + G          L    
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442

Query: 94  SLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFD 153
               +G  T    S + + +  +  +        D+ +                +L+  +
Sbjct: 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR--------GCPNLQKLE 494

Query: 154 LSGNFKLDR 162
           + G    +R
Sbjct: 495 MRGCCFSER 503

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 20/172 (11%)

Query: 2   LDLSDCK--SLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICG--CKRLKS 57
             +++    S K L     N  SL  + +     L+ +  F +A N+EE CG        
Sbjct: 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG 258

Query: 58  LPSSICKLKSLKVLNLDGCSNI-----QKLPHELGNLEALNSLYAKGIATTEVPSSVVRL 112
           +P     L   + L   G S +       L      +  L+ LYA     TE   ++++ 
Sbjct: 259 MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE--TEDHCTLIQK 316

Query: 113 NNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKE 164
              L  L + R+  GD+ + +L          +   L+   +         E
Sbjct: 317 CPNLEVLET-RNVIGDRGLEVL--------AQYCKQLKRLRIERGADEQGME 359

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 18/170 (10%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI-CGCKRLKS 57
           LDLS    + SL + +   L+ LK LNL+   K+ ++ +  F    N++ +      L  
Sbjct: 271 LDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHE----LGNLEALNSLYAKGIATTEVPSSVVRL 112
           L SS    L  +  ++L    +I  +  +    L  L+ L+ L    + T     S+  +
Sbjct: 329 LYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD-LRDNALTTIHFIPSIPDI 386

Query: 113 N---NKLYELSSD--RSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
               NKL  L      +         L  + +    L +  L+   L+ N
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 18/188 (9%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI----CGCKR 54
           L+L    +  ++  E   NL +L+ L+L    K+  L    F    ++ E+    CG   
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSD 111

Query: 55  LKSLPSSICKLKSLKVLNLDGCSNIQKLPHE--LGNLEALNSLYAKGIATTEVPSSVVR- 111
                     LK+L  L+L     I+ L      G L +L S+         V    +  
Sbjct: 112 AVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170

Query: 112 -LNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGNFKLDRKEVRGIFE 170
                L   S   +    +           ++      L   D+SGN      ++ G F 
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWG---KCMNPFRNMVLEILDVSGNG--WTVDITGNFS 225

Query: 171 DALQDIQL 178
           +A+   Q 
Sbjct: 226 NAISKSQA 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L L + K +  +   +S L  L  L+L    ++  +   +    ++ +      +  L  
Sbjct: 139 LYLGNNK-ITDITV-LSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDL-R 194

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
           ++  LK+L VL L     + K  +   NL   N++ 
Sbjct: 195 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 40/178 (22%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGC--------SKLKRLPEFSSAGN----IEEI 49
            +L   KS+       + L S+ ++  +            L  + +    GN    I+ +
Sbjct: 29  DNLKK-KSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPL 86

Query: 50  CGCKRLKSLP---------SSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI 100
              K L  L          SS+  LK LK L+L+    I  +   L +L  L SLY    
Sbjct: 87  ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-GISDING-LVHLPQLESLYLGNN 144

Query: 101 ATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGL-HMTDLRHFDLSGN 157
             T++ + + RL   L  LS + ++           I+  I  L  +T L++  LS N
Sbjct: 145 KITDI-TVLSRLTK-LDTLSLEDNQ-----------IS-DIVPLAGLTKLQNLYLSKN 188

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE--ICGCKRLK 56
           L+L D + L ++P      L  LK+L L     ++ +P   F+   ++    +   KRL 
Sbjct: 117 LELFDNR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLS 174

Query: 57  SLPSSI-CKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
            +       L +L+ LNL  C N++++P+ L  L  L+ L 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMC-NLREIPN-LTPLIKLDELD 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE--ICGCKRLK 56
           L L +   ++S+P+   + + SL++L+L    +L  + E  F    N+    +  C  L+
Sbjct: 141 LWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLR 198

Query: 57  SLPSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTEVPSSVVRLNNK 115
            +P ++  L  L  L+L G  ++  +       L  L  L+        +  +       
Sbjct: 199 EIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 116 LYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
           L E++          + LL     +     +  L    L  N
Sbjct: 257 LVEINLA-----HNNLTLLPHDLFT----PLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI-CGCKRLKS 57
           L LS    ++++     + L +L  L L    +L  +P   F     ++E+      ++S
Sbjct: 93  LQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIES 150

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLY 96
           +PS    ++ SL+ L+L     +  +       L  L  L 
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC-GCKRLKS 57
           +   +   ++ LPA +  +   ++ LNL+   +++ +    F+ A  I+++  G   ++ 
Sbjct: 50  VTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHEL-GNLEALNSLY 96
           LP  +   +  L VL L+   ++  LP  +  N   L +L 
Sbjct: 108 LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLS 147

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 25/96 (26%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS 60
           +DLS  + L+ +       ++ L++L +S               N        RL +L  
Sbjct: 253 VDLSYNE-LEKIMYHPFVKMQRLERLYIS--------------NN--------RLVALNL 289

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
               + +LKVL+L    ++  +       + L +LY
Sbjct: 290 YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 26/95 (27%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           L +S+ + L +L      + +LK L+LS                         L  +  +
Sbjct: 277 LYISNNR-LVALNLYGQPIPTLKVLDLSHN----------------------HLLHVERN 313

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
             +   L+ L LD   +I  L   L     L +L 
Sbjct: 314 QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 29/173 (16%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI--CGCKRLK 56
           L +     ++ LP  +  N+  L  L L     L  LP   F +   +  +       L+
Sbjct: 98  LYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLE 154

Query: 57  SLPSSI-CKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVPSSVVRL-- 112
            +         SL+ L L     +  +    + +L   N +    ++T  +P +V  L  
Sbjct: 155 RIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHAN-VSYNLLSTLAIPIAVEELDA 212

Query: 113 -NNKLYELSSDRSRRGDKQMGLLLPITLS------IDGL-HMTDLRHFDLSGN 157
            +N +  +    +         L  + L          L +   L   DLS N
Sbjct: 213 SHNSINVVRGPVNVE-------LTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 15/121 (12%)

Query: 6   DC--KSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPSSI 62
                  +  P +        K NL     +      +   +I++I      +KS+   I
Sbjct: 4   TVSTPIKQIFPDDAFA--ETIKANLKK-KSVTDAVTQNELNSIDQIIANNSDIKSVQ-GI 59

Query: 63  CKLKSLKVLNLDGCSN-IQKLP--HELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYEL 119
             L +++ L L    N +  +    EL NL  L  L    + +  +P+ V      L EL
Sbjct: 60  QYLPNVRYLALG--GNKLHDISALKELTNLTYLI-LTGNQLQS--LPNGVFDKLTNLKEL 114

Query: 120 S 120
            
Sbjct: 115 V 115

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC-GCKRLKS 57
           +   +   ++ LPA +  +   ++ LNL+   +++ +    F+ A  I+++  G   ++ 
Sbjct: 56  VTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHEL-GNLEALNSLY 96
           LP  +   +  L VL L+   ++  LP  +  N   L +L 
Sbjct: 114 LPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLS 153

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 25/96 (26%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS 60
           +DLS  + L+ +       ++ L++L +S               N        RL +L  
Sbjct: 259 VDLSYNE-LEKIMYHPFVKMQRLERLYIS--------------NN--------RLVALNL 295

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
               + +LKVL+L    ++  +       + L +LY
Sbjct: 296 YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 26/95 (27%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           L +S+ + L +L      + +LK L+LS                         L  +  +
Sbjct: 283 LYISNNR-LVALNLYGQPIPTLKVLDLSHN----------------------HLLHVERN 319

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
             +   L+ L LD   +I  L   L     L +L 
Sbjct: 320 QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 27/172 (15%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC-GCKRLKS 57
           L +     ++ LP  +  N+  L  L L     L  LP   F +   +  +      L+ 
Sbjct: 104 LYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVPSSVVRL--- 112
           +         SL+ L L     +  +    + +L   N +    ++T  +P +V  L   
Sbjct: 162 IEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHAN-VSYNLLSTLAIPIAVEELDAS 219

Query: 113 NNKLYELSSDRSRRGDKQMGLLLPITLS------IDGL-HMTDLRHFDLSGN 157
           +N +  +    +         L  + L          L +   L   DLS N
Sbjct: 220 HNSINVVRGPVNVE-------LTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLP 59
           LD+S             S  +SL  LN+S    L           I+ +     ++KS+P
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPRIKVLDLHSNKIKSIP 437

Query: 60  SSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYA 97
             + KL++L+ LN+     ++ +P      L +L  ++ 
Sbjct: 438 KQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWL 475

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 28/113 (24%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEIC-GCKRLKSLPS 60
           L L   +    +   ++   +L +LNLSGCS         S   ++ +   C RL  L  
Sbjct: 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-------SEFALQTLLSSCSRLDELNL 175

Query: 61  SICK--------------LKSLKVLNLDGCSN------IQKLPHELGNLEALN 93
           S C                +++  LNL G         +  L     NL  L+
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 22/107 (20%)

Query: 2   LDLSDCKSL---KSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL 58
           L+LS  +       L   +    +L  L+LS    L       +    +E      L+ L
Sbjct: 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML------KNDC-FQEFFQLNYLQHL 252

Query: 59  ------------PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALN 93
                          + ++ +LK L + G      L      L  L 
Sbjct: 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE-ICGCKRLKS 57
           LDLS    L+ L +    +   L+ L+LS C +++ + +  + S  ++   I     ++S
Sbjct: 33  LDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHEL-GNLEALNSLY 96
           L       L SL+ L      N+  L +   G+L+ L  L 
Sbjct: 91  LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELN 130

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE--ICGCKRLK 56
           L L +   L+++P+   SNL ++ ++ +S    L++L    F +   +    I   + L 
Sbjct: 36  LKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 57  SLPSSICK-LKSLKVLNLDGCSNIQKLPHE--LGNLEALNSLY 96
            +     K L  LK L +     ++  P    + + +    L 
Sbjct: 95  YIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILE 136

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 36/149 (24%)

Query: 10  LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPSSICKLKSL 68
           L            ++ L+L+    L  L        +  +     RL++LP ++  L+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCL 488

Query: 69  KVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGD 128
           +VL       ++ +   + NL  L  L                 NN+L + ++ +     
Sbjct: 489 EVLQASDN-ALENVD-GVANLPRLQELLLC--------------NNRLQQSAAIQPLV-- 530

Query: 129 KQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
                               L   +L GN
Sbjct: 531 ----------------SCPRLVLLNLQGN 543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 23/160 (14%), Positives = 56/160 (35%), Gaps = 26/160 (16%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           +       +       ++L+ +  L+  G   +  +       N+  +     ++  L +
Sbjct: 24  IAAGKSN-VTDTV-TQADLDGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDL-A 79

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN--KLYE 118
            +  L  +  L L G   ++ +   +  L+++ +L       T+V      L     L  
Sbjct: 80  PLKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQV 133

Query: 119 LSSDRSRRGDKQMGLLLPITLSIDGL-HMTDLRHFDLSGN 157
           L  D ++           IT +I  L  +T+L++  +   
Sbjct: 134 LYLDLNQ-----------IT-NISPLAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L + + + +  L   ++NL  L  L      K+  +   +S  N+ E+     ++  + S
Sbjct: 156 LSIGNAQ-VSDLTP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQISDV-S 211

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
            +    +L ++ L   +   +      NL   N + 
Sbjct: 212 PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVK 247

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 26/178 (14%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI-CGCKRLKS 57
           L L   + LK +P  + + L +L KL++S   K+  L +  F    N++ +  G   L  
Sbjct: 85  LGLRSNR-LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 58  LPSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTEVPSSVVRLNNK 115
           +       L SL+ L L+ C N+  +P E L +L  L  L  + +    +     +   +
Sbjct: 143 ISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 116 LYELSSDRSRR-----GDKQMGLLLPITLSIDG-----------LHMTDLRHFDLSGN 157
           L  L             +   GL L  +LSI              H+  LR  +LS N
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI-CGCKRLKSL 58
           L++S    L ++        +L  L+++ C  L  +P         +  +      + ++
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTI 263

Query: 59  PSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLYAKGIATTEVPSSVVRLNNKL 116
             S+  +L  L+ + L G   +  +       L  L  L   G   T +  SV      L
Sbjct: 264 EGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 117 YELS 120
             L 
Sbjct: 323 ETLI 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEI--------- 49
           L+L++   + ++     +NL +L+ L L    +LK +P   F+   N+ ++         
Sbjct: 61  LELNENI-VSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 50  ------CGCKRLKSL-----------PSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEA 91
                      LKSL             +   L SL+ L L+ C N+  +P E L +L  
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG 177

Query: 92  LNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRH 151
           L  L  + +    +     +   +L  L        D         T++ + L+  +L  
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD---------TMTPNCLYGLNLTS 228

Query: 152 FDLSGN 157
             ++  
Sbjct: 229 LSITHC 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           L LS  + +  L   + +L  L++L+++   +LK L    SA           L+    S
Sbjct: 68  LHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNNELRDT-DS 123

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG 99
           +  LK+L++L++     ++ +   LG L  L  L   G
Sbjct: 124 LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHG 159

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPS 60
           L L + + L+   + + +L++L+ L++    KLK +        +E +      + +   
Sbjct: 111 LFLDNNE-LRDTDS-LIHLKNLEILSIRNN-KLKSIVMLGFLSKLEVLDLHGNEITNT-G 166

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLY 96
            + +LK +  ++L G   + +       L   N++ 
Sbjct: 167 GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 17 ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLPSSICKLKSLKVLNLDG 75
             L +  K NL     +  L        ++        ++SL + +    +LK L+L  
Sbjct: 15 DPGLANAVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSH 72

Query: 76 CSNIQKLPHELGNLEALNSLY 96
             I  L   L +L  L  L 
Sbjct: 73 N-QISDLSP-LKDLTKLEELS 91

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 2   LDLSDCKSLKSLPAEI--SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEEIC-GCKRLK 56
           LDLS    L  L AE   + L +L  L LS    L  +    F    N+  +      L 
Sbjct: 44  LDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 57  SLPSSIC-KLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLY 96
           +L   +   L++L+VL L    +I  +      ++  L  LY
Sbjct: 102 TLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLY 142

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 10/102 (9%)

Query: 2   LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPE--FSSAGNIEE--ICGCKRLK 56
           L L     L  + A   + L  L++L+LS  ++L+ +    F   G +    +  C  L+
Sbjct: 61  LWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQ 118

Query: 57  SLPSSI-CKLKSLKVLNLDGCSNIQKLPHE-LGNLEALNSLY 96
            L   +   L +L+ L L     +Q LP +   +L  L  L+
Sbjct: 119 ELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLF 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.61
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.61
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.6
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.58
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.58
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.57
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.56
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.55
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.53
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.53
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.52
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.52
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.5
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.5
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.49
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.49
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.47
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.45
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.45
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.44
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.41
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.4
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.37
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.36
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.34
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.28
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.27
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.26
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.18
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.17
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.73
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.93
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.46
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.31
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.36

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=1.7e-19  Score=167.09  Aligned_cols=164  Identities=23%  Similarity=0.382  Sum_probs=132.1

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      .|+|++|. +..+|..++++++|++|+|++|... .+|..++.+. +  .++++| .+..+|..++++++|++|++++|+
T Consensus        85 ~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           85 ALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             EEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEET
T ss_pred             EEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCC
Confidence            37899988 4588988999999999999998766 8887665554 3  345554 566899999999999999999999


Q ss_pred             CCCCCCcccCC---------CcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCC
Q 039239           78 NIQKLPHELGN---------LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTD  148 (323)
Q Consensus        78 ~~~~lp~~l~~---------l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~  148 (323)
                      +.+.+|..++.         +++|++|++++|.++.+|..++.++ +|+.|+++ +|.       +..+  +..++.+++
T Consensus       162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~L~-~N~-------l~~l--~~~l~~l~~  230 (328)
T 4fcg_A          162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ-NLKSLKIR-NSP-------LSAL--GPAIHHLPK  230 (328)
T ss_dssp             TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCT-TCCEEEEE-SSC-------CCCC--CGGGGGCTT
T ss_pred             CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCC-CCCEEEcc-CCC-------CCcC--chhhccCCC
Confidence            99999988765         9999999999999999999999999 99999999 888       6654  667888888


Q ss_pred             CCeecCCCC-c--ccCccccccccchhhhhhhhhhh
Q 039239          149 LRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       149 L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      |++|++++| +  .+| ..+..+  .+|+.+++..|
T Consensus       231 L~~L~Ls~n~~~~~~p-~~~~~l--~~L~~L~L~~n  263 (328)
T 4fcg_A          231 LEELDLRGCTALRNYP-PIFGGR--APLKRLILKDC  263 (328)
T ss_dssp             CCEEECTTCTTCCBCC-CCTTCC--CCCCEEECTTC
T ss_pred             CCEEECcCCcchhhhH-HHhcCC--CCCCEEECCCC
Confidence            999999988 5  555 344444  55555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=2e-19  Score=166.73  Aligned_cols=185  Identities=19%  Similarity=0.247  Sum_probs=151.7

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccC---------CCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICK---------LKSL   68 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~---------L~~L   68 (323)
                      +|+|++|.+. .+|..++++++|++|+|++|... .+|..++.+.   ..++++|+.++.+|..++.         +++|
T Consensus       108 ~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L  185 (328)
T 4fcg_A          108 HMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL  185 (328)
T ss_dssp             EEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred             EEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence            4899999866 89999999999999999998665 8887666554   4456788899999988765         9999


Q ss_pred             CEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCC
Q 039239           69 KVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTD  148 (323)
Q Consensus        69 ~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~  148 (323)
                      ++|++++|.+. .+|..++++++|++|++++|.++.+|..+..++ +|+.|+++ +|..      ...  +|..++.+++
T Consensus       186 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~-~L~~L~Ls-~n~~------~~~--~p~~~~~l~~  254 (328)
T 4fcg_A          186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLR-GCTA------LRN--YPPIFGGRAP  254 (328)
T ss_dssp             CEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCT-TCCEEECT-TCTT------CCB--CCCCTTCCCC
T ss_pred             CEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCC-CCCEEECc-CCcc------hhh--hHHHhcCCCC
Confidence            99999999766 899999999999999999999999999999999 99999999 7763      233  3778899999


Q ss_pred             CCeecCCCC-c--ccCccccccccchhhhhhhhhhhhhHHHHhhcccccccceeEeCCCCCCCcceeccccCCeeE
Q 039239          149 LRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAAARWKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSS  221 (323)
Q Consensus       149 L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n~~~~~l~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sl~  221 (323)
                      |++|++++| +  .+| ..+..+  ++|+.+++..|...                    +.+|+||........+.
T Consensus       255 L~~L~L~~n~~~~~~p-~~~~~l--~~L~~L~L~~n~~~--------------------~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLP-LDIHRL--TQLEKLDLRGCVNL--------------------SRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CCEEECTTCTTCCBCC-TTGGGC--TTCCEEECTTCTTC--------------------CCCCGGGGGSCTTCEEE
T ss_pred             CCEEECCCCCchhhcc-hhhhcC--CCCCEEeCCCCCch--------------------hhccHHHhhccCceEEe
Confidence            999999999 5  776 456555  77777776665222                    57899998877665554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.75  E-value=7e-19  Score=161.84  Aligned_cols=204  Identities=19%  Similarity=0.205  Sum_probs=143.7

Q ss_pred             EEecCCCCCC--cCCcccCCCCCCCEEeeeC-CCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeC
Q 039239            2 LDLSDCKSLK--SLPAEISNLESLKKLNLSG-CSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDG   75 (323)
Q Consensus         2 L~Ls~n~~l~--~lP~~i~~L~~L~~L~Ls~-c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~   75 (323)
                      |+|++|.+.+  .+|..++++++|++|++++ |...+.+|..++.+.   ..+++++...+.+|..+.++++|++|++++
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence            7899999888  8999999999999999996 777778887766554   334556554458888899999999999999


Q ss_pred             CCCCCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecC
Q 039239           76 CSNIQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDL  154 (323)
Q Consensus        76 n~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~L  154 (323)
                      |.+.+.+|..++.+++|++|++++|.++ .+|..++.++.+|+.|+++ +|.       +... +|..+..++ |++|++
T Consensus       135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~-------l~~~-~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNR-------LTGK-IPPTFANLN-LAFVDL  204 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSE-------EEEE-CCGGGGGCC-CSEEEC
T ss_pred             CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCe-------eecc-CChHHhCCc-ccEEEC
Confidence            9988899999999999999999999996 8899898886579999998 776       4422 255566665 777777


Q ss_pred             CCC-c-ccCccccccccchhhhhhhhhhhhh---------HHHHhhcccccccceeEeCCCCCCCcceeccccCCeeEEe
Q 039239          155 SGN-F-KLDRKEVRGIFEDALQDIQLMAAAR---------WKQVREEGYFLEKCGYVIFPGNEIPKWFKFQSVGSSSSIT  223 (323)
Q Consensus       155 s~N-l-~lP~~~L~~L~~~sL~~l~l~~n~~---------~~~l~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~sl~i~  223 (323)
                      ++| + ..++..+..+  ++|+.+++..|..         ...++...+..+.+ .     ..+|.||.....-..+.+.
T Consensus       205 s~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l-~-----~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          205 SRNMLEGDASVLFGSD--KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI-Y-----GTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CSSEEEECCGGGCCTT--SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC-E-----ECCCGGGGGCTTCCEEECC
T ss_pred             cCCcccCcCCHHHhcC--CCCCEEECCCCceeeecCcccccCCCCEEECcCCcc-c-----CcCChHHhcCcCCCEEECc
Confidence            777 6 4444444444  4455554444311         01111222333333 1     2578888776655555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.71  E-value=2.6e-17  Score=168.89  Aligned_cols=124  Identities=18%  Similarity=0.159  Sum_probs=108.2

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      +|++++|++.+.+|..++++++|++|++++|...+.+|..+..+.   ..++++|...+.+|..++++++|++|++++|.
T Consensus       422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR  501 (768)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence            378999998889999999999999999999999889998765544   44566777667889999999999999999999


Q ss_pred             CCCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +.+.+|..++.+++|++|++++|.+. .+|..++.++ +|+.|+++ +|.
T Consensus       502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls-~N~  549 (768)
T 3rgz_A          502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLN-TNL  549 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECC-SSE
T ss_pred             cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECC-CCc
Confidence            99999999999999999999999984 7899999999 99999998 775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=3.6e-17  Score=167.82  Aligned_cols=108  Identities=21%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|.+.+.+|..++.+++|++|++++|...+.+|..+..+.   ..++++|...+.+|..++++++|++|++++|.+
T Consensus       447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF  526 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence            56667766666676666677777777777666666665544333   333455554456666666666666666666666


Q ss_pred             CCCCCcccCCCcccceeecccccc-ccCChhH
Q 039239           79 IQKLPHELGNLEALNSLYAKGIAT-TEVPSSV  109 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i-~~lP~~i  109 (323)
                      .+.+|..++.+++|++|++++|.+ +.+|..+
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            666666666666666666666665 3455443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=2.1e-16  Score=142.84  Aligned_cols=176  Identities=22%  Similarity=0.198  Sum_probs=111.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~   77 (323)
                      |++++|++.+..+..+..+++|++|++++|...+..|..+..+.   ..+++++..++.+ |..+.++++|++|++++|.
T Consensus        37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~  116 (285)
T 1ozn_A           37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG  116 (285)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence            67888876555556678888888888888766655565555443   3345565556666 5567788888888888887


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCC-----CC--cceecC---------c
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQM-----GL--LLPITL---------S  140 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~-----~~--L~~l~L---------~  140 (323)
                      +.+..|..++.+++|++|++++|.++.+|. .+..++ +|+.|+++ +|......     ..  |+.+++         +
T Consensus       117 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLH-GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-CccEEECC-CCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence            777777778888888888888888877654 466777 88888888 66621100     00  222222         2


Q ss_pred             cccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          141 IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       141 ~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      ..+.++++|++|++++| + .+|+..+..+  ++|+.+++..|
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~N  235 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLSALPTEALAPL--RALQYLRLNDN  235 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTC--TTCCEEECCSS
T ss_pred             hHccCcccccEeeCCCCcCCcCCHHHcccC--cccCEEeccCC
Confidence            33455555666666665 5 5554334333  45555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=2e-16  Score=142.97  Aligned_cols=164  Identities=18%  Similarity=0.230  Sum_probs=119.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSL-PSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~   77 (323)
                      ++.+++. +..+|..+  .++|++|++++|...+..+..+..+. +  .+++++ .+..+ |..+.++++|++|++++|.
T Consensus        16 ~~c~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           16 TSCPQQG-LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EECCSSC-CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEcCcCC-cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCC
Confidence            4555544 67788654  57999999999876665555555443 3  345554 45555 7789999999999999998


Q ss_pred             CCCCC-CcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239           78 NIQKL-PHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS  155 (323)
Q Consensus        78 ~~~~l-p~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls  155 (323)
                      ..+.+ |..+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.       ++.+. +..++.+++|++|+++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQ-DNA-------LQALP-DDTFRDLGNLTHLFLH  161 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECC
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECC-CCc-------ccccC-HhHhccCCCccEEECC
Confidence            44444 78899999999999999999877 66788899 99999999 887       55441 2346777888888888


Q ss_pred             CC-c-ccCccccccccchhhhhhhhhhh
Q 039239          156 GN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       156 ~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      +| + .+|+..+..+  .+|+.+++..|
T Consensus       162 ~n~l~~~~~~~~~~l--~~L~~L~l~~n  187 (285)
T 1ozn_A          162 GNRISSVPERAFRGL--HSLDRLLLHQN  187 (285)
T ss_dssp             SSCCCEECTTTTTTC--TTCCEEECCSS
T ss_pred             CCcccccCHHHhcCc--cccCEEECCCC
Confidence            88 7 7765444444  55555554444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.67  E-value=4.3e-17  Score=163.94  Aligned_cols=164  Identities=17%  Similarity=0.180  Sum_probs=108.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCC------Cc----------------------------------------
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSK------LK----------------------------------------   35 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~------l~----------------------------------------   35 (323)
                      |+|++|.+.|.+|+.+++|++|++|+|++|..      .+                                        
T Consensus        86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l  165 (636)
T 4eco_A           86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC  165 (636)
T ss_dssp             EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence            78999999999999999999999999999843      11                                        


Q ss_pred             -------------------------------cCCCCcCCcc---hhhhcCcccccc------------------cccccc
Q 039239           36 -------------------------------RLPEFSSAGN---IEEICGCKRLKS------------------LPSSIC   63 (323)
Q Consensus        36 -------------------------------~~p~~~~~l~---l~~L~~~~~l~~------------------lP~~i~   63 (323)
                                                     .+|+.++.+.   ..+++++. +..                  +|+.++
T Consensus       166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~  244 (636)
T 4eco_A          166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLK  244 (636)
T ss_dssp             HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             hhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhh
Confidence                                           1343333332   22334443 333                  666666


Q ss_pred             --CCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc-cc--cCChhHHhc------ccccceeEccCCCCCCCCCC
Q 039239           64 --KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA-TT--EVPSSVVRL------NNKLYELSSDRSRRGDKQMG  132 (323)
Q Consensus        64 --~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~-i~--~lP~~i~~l------~~~L~~L~l~~~n~~~~~~~  132 (323)
                        ++++|++|++++|.+.+.+|..++++++|++|++++|. ++  .+|..++.+      + +|+.|+++ +|.      
T Consensus       245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-~L~~L~L~-~n~------  316 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE-KIQIIYIG-YNN------  316 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-TCCEEECC-SSC------
T ss_pred             hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC-CCCEEECC-CCc------
Confidence              67777777777776666777667777777777777776 54  466666665      5 67777776 665      


Q ss_pred             CcceecCcc--ccccCCCCCeecCCCC-c--ccCccccccccchhhhhhhhhhh
Q 039239          133 LLLPITLSI--DGLHMTDLRHFDLSGN-F--KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       133 ~L~~l~L~~--~l~~l~~L~~L~Ls~N-l--~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       ++.  +|.  .++++++|++|++++| +  .+|  .+..+  .+|+.+++..|
T Consensus       317 -l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l--~~L~~L~L~~N  363 (636)
T 4eco_A          317 -LKT--FPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSE--IKLASLNLAYN  363 (636)
T ss_dssp             -CSS--CCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEE--EEESEEECCSS
T ss_pred             -CCc--cCchhhhccCCCCCEEeCcCCcCccchh--hhCCC--CCCCEEECCCC
Confidence             553  366  6778888888888888 6  676  44443  45555554444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=6.9e-16  Score=138.58  Aligned_cols=166  Identities=22%  Similarity=0.242  Sum_probs=100.9

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc-hh--hhcCccccccccc-cccCCCCCCEEEeeCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGC   76 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n   76 (323)
                      |+|++|++.+..+..+.++++|++|++++|... .+|. .+..+. ++  ++++ +.+..+|. .+.++++|++|++++|
T Consensus        42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCS-SCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred             EECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCC-CcCCcCCHhHcccccCCCEEECCCC
Confidence            566666644433345666777777777775443 3333 223222 22  2333 33555554 3466777777777777


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS  155 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls  155 (323)
                      .+.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+. +..+..+++|++|+++
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~-~~~~~~l~~L~~L~L~  189 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLY-NNQ-------LKRVP-EGAFDKLTELKTLKLD  189 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECC
T ss_pred             ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc-ccceeEec-CCc-------CcEeC-hhHhccCCCcCEEECC
Confidence            66666666667777777777777777666543 56666 77777777 666       44441 2346777888888888


Q ss_pred             CC-c-ccCccccccccchhhhhhhhhhh
Q 039239          156 GN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       156 ~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      +| + .+|+..+..+  .+|+.+++..|
T Consensus       190 ~N~l~~~~~~~~~~l--~~L~~L~l~~N  215 (270)
T 2o6q_A          190 NNQLKRVPEGAFDSL--EKLKMLQLQEN  215 (270)
T ss_dssp             SSCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred             CCcCCcCCHHHhccc--cCCCEEEecCC
Confidence            88 7 7775545544  56666666555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.65  E-value=9.9e-17  Score=147.42  Aligned_cols=123  Identities=14%  Similarity=0.133  Sum_probs=87.9

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccccccCCC-CCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSSICKLK-SLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~i~~L~-~L~~L~Ls~n   76 (323)
                      +|+|++|++.+.+|..++++++|++|+|++|...+.+|..+..+. +  .++++|...+.+|..+++++ +|++|++++|
T Consensus       105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            377888887778888888888888888888877777776655443 3  33445444447777777777 7888888887


Q ss_pred             CCCCCCCcccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+.+.+|..++.++ |++|++++|.++ .+|..+..++ +|+.|+++ +|.
T Consensus       185 ~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~  232 (313)
T 1ogq_A          185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-NTQKIHLA-KNS  232 (313)
T ss_dssp             EEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS-CCSEEECC-SSE
T ss_pred             eeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC-CCCEEECC-CCc
Confidence            77777777777776 777777777774 4566666777 77777777 665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.65  E-value=9.2e-17  Score=161.50  Aligned_cols=167  Identities=14%  Similarity=0.210  Sum_probs=137.8

Q ss_pred             CEEecCCCCCCc-----------------CCcccC--CCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccc--
Q 039239            1 MLDLSDCKSLKS-----------------LPAEIS--NLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLK--   56 (323)
Q Consensus         1 ~L~Ls~n~~l~~-----------------lP~~i~--~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~--   56 (323)
                      +|+|++|.+.+.                 +|..++  ++++|++|+|++|...+.+|+.++.+.   ..++++|..+.  
T Consensus       210 ~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~  289 (636)
T 4eco_A          210 QFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE  289 (636)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH
T ss_pred             EEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc
Confidence            489999997775                 999999  999999999999999999998877665   44566776354  


Q ss_pred             cccccccCC------CCCCEEEeeCCCCCCCCCc--ccCCCcccceeeccccccc-cCChhHHhcccccceeEccCCCCC
Q 039239           57 SLPSSICKL------KSLKVLNLDGCSNIQKLPH--ELGNLEALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRRG  127 (323)
Q Consensus        57 ~lP~~i~~L------~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~~  127 (323)
                      .+|..++++      ++|++|++++|.+. .+|.  .++++++|++|++++|.+. .+| .+..++ +|+.|+++ +|. 
T Consensus       290 ~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~-~N~-  364 (636)
T 4eco_A          290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLA-YNQ-  364 (636)
T ss_dssp             HHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECC-SSE-
T ss_pred             cchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECC-CCc-
Confidence            699988887      99999999999877 8998  8999999999999999997 999 899999 99999999 888 


Q ss_pred             CCCCCCcceecCccccccCCC-CCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          128 DKQMGLLLPITLSIDGLHMTD-LRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       128 ~~~~~~L~~l~L~~~l~~l~~-L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                            +..+  |..+..+++ |++|++++| + .+|. .+..+...+|+.+++..|
T Consensus       365 ------l~~l--p~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          365 ------ITEI--PANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             ------EEEC--CTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSS
T ss_pred             ------cccc--cHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCC
Confidence                  7744  888999999 999999999 8 8883 333222234555555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.64  E-value=8.2e-16  Score=141.78  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=74.1

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|++.+..+..++++++|++|+|++|...+..|..+..+. ++.  +++ +.++.+|..+.  ++|++|++++|.+
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l~~n~l  133 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHENEI  133 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEECCSSCC
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEECCCCcc
Confidence            67777775554444677777777777777666555565554433 332  333 34556666553  5677777777666


Q ss_pred             CCCCCcccCCCcccceeeccccccc---cCChhHHhcccccceeEccCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATT---EVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~---~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+..+..+..+++|++|++++|.++   ..|..+..++ +|+.|+++ +|.
T Consensus       134 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~-~n~  182 (330)
T 1xku_A          134 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIA-DTN  182 (330)
T ss_dssp             CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECC-SSC
T ss_pred             cccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECC-CCc
Confidence            5555555666777777777777664   3355666666 67777776 555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=1.5e-15  Score=134.88  Aligned_cols=164  Identities=23%  Similarity=0.257  Sum_probs=124.0

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccc-ccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLP-SSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~   77 (323)
                      ++++++. +..+|..+.  ++++.|+|++|...+..+..+..+. +  .+++++ .+..++ ..+.++++|++|++++|.
T Consensus        19 l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           19 VDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             EECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc
Confidence            5666665 667887665  6889999999877666665554443 3  344554 455554 457889999999999998


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      +.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+. +..++.+++|++|+|++
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~~~-~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLN-TNQ-------LQSIP-AGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCS
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECc-CCc-------CCccC-HHHcCcCcCCCEEECCC
Confidence            8877777888999999999999999888765 57788 99999999 887       66552 23678899999999999


Q ss_pred             C-c-ccCccccccccchhhhhhhhhhh
Q 039239          157 N-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       157 N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      | + .+|+..+..+  .+|+.+++..|
T Consensus       165 N~l~~~~~~~~~~l--~~L~~L~l~~N  189 (251)
T 3m19_A          165 NQLQSVPHGAFDRL--GKLQTITLFGN  189 (251)
T ss_dssp             SCCSCCCTTTTTTC--TTCCEEECCSC
T ss_pred             CcCCccCHHHHhCC--CCCCEEEeeCC
Confidence            9 8 8886666666  77777777666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=1.4e-16  Score=165.11  Aligned_cols=158  Identities=18%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEee-eCCCCCccCCCCcC--------------------------------------
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNL-SGCSKLKRLPEFSS--------------------------------------   42 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~L-s~c~~l~~~p~~~~--------------------------------------   42 (323)
                      |+|++|.+.|.+|+.+++|++|++|+| ++|...+..|-...                                      
T Consensus       328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~  407 (876)
T 4ecn_A          328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA  407 (876)
T ss_dssp             EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence            789999988999999999999999999 66543333211100                                      


Q ss_pred             --------------Ccchhhh--c-CccccccccccccCCCCCCEEEeeCCCCCC-----------------CCCcccC-
Q 039239           43 --------------AGNIEEI--C-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQ-----------------KLPHELG-   87 (323)
Q Consensus        43 --------------~l~l~~L--~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~-----------------~lp~~l~-   87 (323)
                                    .+.+.++  . .++.+..+|+.++++++|++|+|++|.+.+                 .+|+.++ 
T Consensus       408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f  487 (876)
T 4ecn_A          408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW  487 (876)
T ss_dssp             HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred             hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence                          0001111  1 123444467667777777777777776666                 2666666 


Q ss_pred             -CCcccceeecccccc-ccCChhHHhcccccceeEccCCCC-CC---CCC----------C--Cccee--------cCcc
Q 039239           88 -NLEALNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRR-GD---KQM----------G--LLLPI--------TLSI  141 (323)
Q Consensus        88 -~l~~L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~-~~---~~~----------~--~L~~l--------~L~~  141 (323)
                       ++++|++|++++|.+ +.+|..+++++ +|+.|+++ +|. ..   .+.          .  -|+.+        .+|.
T Consensus       488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls-~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          488 SNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIA-CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             GGCTTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECT-TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             ccCCCCCEEECcCCCCCccChHHHhCCC-CCCEEECc-CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence             677777777777664 56666677776 77777776 554 11   000          0  01222        2244


Q ss_pred             --ccccCCCCCeecCCCC-c-ccC
Q 039239          142 --DGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       142 --~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                        .++++++|++|++++| + .+|
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhhhcCCCCCEEECCCCCcccch
Confidence              5667777777777777 6 666

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=9.2e-16  Score=139.60  Aligned_cols=164  Identities=22%  Similarity=0.180  Sum_probs=116.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |+|++|++.+..|..+..+++|++|+|++|... .++.......++  ++++ +.++.+|..+.++++|++|++++|.+.
T Consensus        36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~l~  113 (290)
T 1p9a_G           36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLT  113 (290)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSCCC
T ss_pred             EEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCcCc
Confidence            677888766555667788888888888886543 344332111233  3444 467788888888888899999888877


Q ss_pred             CCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCc-cccccCCCCCeecCCCC
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLS-IDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N  157 (323)
                      +..|..|+.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+  + ..+..+++|++|++++|
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLA-NNN-------LTEL--PAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECT-TSC-------CSCC--CTTTTTTCTTCCEEECCSS
T ss_pred             ccCHHHHcCCCCCCEEECCCCCCCccChhhccccc-CCCEEECC-CCc-------CCcc--CHHHhcCcCCCCEEECCCC
Confidence            66667788888899999999888877654 46777 88889888 787       6655  4 34577899999999999


Q ss_pred             -c-ccCccccccccchhhhhhhhhhh
Q 039239          158 -F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 -l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       + .+|. .+...  .+|+.+.+..|
T Consensus       183 ~l~~ip~-~~~~~--~~L~~l~L~~N  205 (290)
T 1p9a_G          183 SLYTIPK-GFFGS--HLLPFAFLHGN  205 (290)
T ss_dssp             CCCCCCT-TTTTT--CCCSEEECCSC
T ss_pred             cCCccCh-hhccc--ccCCeEEeCCC
Confidence             8 8873 22222  45666666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.61  E-value=1.7e-15  Score=145.87  Aligned_cols=153  Identities=17%  Similarity=0.138  Sum_probs=85.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~   77 (323)
                      |+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. ++  ++++ +.+..+|+. +.++++|++|+|++|.
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~  158 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNNP  158 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhhhcccCCCCEEECCCCC
Confidence            67777776655566677777777777777655554444444332 22  3333 335555543 5666677777777766


Q ss_pred             CCCCCCcccCCCcccceeeccc-cccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKG-IATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS  155 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~-n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls  155 (323)
                      +....+..+.++++|++|++++ +.++.+|. .+..++ +|+.|+++ +|.       ++.+   ..+..+++|++|+++
T Consensus       159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~-~n~-------l~~~---~~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLG-MCN-------IKDM---PNLTPLVGLEELEMS  226 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECT-TSC-------CSSC---CCCTTCTTCCEEECT
T ss_pred             cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECC-CCc-------cccc---ccccccccccEEECc
Confidence            5544444566666666666666 33455543 455566 66666666 555       3322   134455555555555


Q ss_pred             CC-c-ccCcccccc
Q 039239          156 GN-F-KLDRKEVRG  167 (323)
Q Consensus       156 ~N-l-~lP~~~L~~  167 (323)
                      +| + .+++..+..
T Consensus       227 ~N~l~~~~~~~~~~  240 (452)
T 3zyi_A          227 GNHFPEIRPGSFHG  240 (452)
T ss_dssp             TSCCSEECGGGGTT
T ss_pred             CCcCcccCcccccC
Confidence            55 4 444333333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.61  E-value=4.8e-15  Score=131.63  Aligned_cols=147  Identities=22%  Similarity=0.192  Sum_probs=120.2

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccc-cccCCCCCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n   76 (323)
                      .|+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. ++  ++++ +.++.+|. .+..+++|++|++++|
T Consensus        39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-CcccccChhHhcccCCCCEEEcCCC
Confidence            389999998777777899999999999999877776666555443 33  4455 45666664 5789999999999999


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS  155 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls  155 (323)
                      .+.+..+..++.+++|++|++++|.++.+|. .+..++ +|+.|+++ +|.       ++.+. +..+..+++|++|+++
T Consensus       118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQTLSLS-TNQ-------LQSVP-HGAFDRLGKLQTITLF  187 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECC
T ss_pred             cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-CCCEEECC-CCc-------CCccC-HHHHhCCCCCCEEEee
Confidence            8876666668999999999999999998876 688899 99999999 888       66552 2467889999999999


Q ss_pred             CC-c
Q 039239          156 GN-F  158 (323)
Q Consensus       156 ~N-l  158 (323)
                      +| +
T Consensus       188 ~N~~  191 (251)
T 3m19_A          188 GNQF  191 (251)
T ss_dssp             SCCB
T ss_pred             CCce
Confidence            99 7

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.60  E-value=3.3e-15  Score=143.37  Aligned_cols=116  Identities=21%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCc-ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCC-C----CC--
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPH-ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQ-M----GL--  133 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~-~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~-~----~~--  133 (323)
                      +.++++|++|++++|+..+.++. .+..+++|++|++++|.++.+|. +..++ +|+.|+++ +|..... +    ++  
T Consensus       156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~-~L~~L~Ls-~N~l~~~~~~~~~~l~~  232 (440)
T 3zyj_A          156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLI-KLDELDLS-GNHLSAIRPGSFQGLMH  232 (440)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCS-SCCEEECT-TSCCCEECTTTTTTCTT
T ss_pred             hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCc-ccCEEECC-CCccCccChhhhccCcc
Confidence            44444455555544444444433 34555555555555555555542 44455 55555555 4441110 0    00  


Q ss_pred             cceecC---------ccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhhh
Q 039239          134 LLPITL---------SIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAAA  182 (323)
Q Consensus       134 L~~l~L---------~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n~  182 (323)
                      |+.+++         +..+.++++|++|+|++| + .+|+..+..+  .+|+.+++..|+
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~Np  290 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL--HHLERIHLHHNP  290 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC--TTCCEEECCSSC
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc--cCCCEEEcCCCC
Confidence            222222         234667777788888877 7 7775555555  677777777773

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=2.7e-15  Score=149.59  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=82.7

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccccc-ccCCCCCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSS-ICKLKSLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n   76 (323)
                      +|+|++|.+.+..|..++.+++|++|+|++|...+..|..++.+. +  +++++| .+..+|+. ++++++|++|++++|
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC
Confidence            377888876666666788888888888888776665555555444 3  334443 56677766 478888888888888


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~  122 (323)
                      .+.+..|..++.+++|++|++++|.++.++  +..++ +|+.|+++
T Consensus       158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~-~L~~L~l~  200 (597)
T 3oja_B          158 NLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP-SLFHANVS  200 (597)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCT-TCSEEECC
T ss_pred             cCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhh-hhhhhhcc
Confidence            887777777888888888888888887664  33444 55555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.59  E-value=4e-15  Score=142.77  Aligned_cols=106  Identities=25%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             hcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCC
Q 039239           49 ICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        49 L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +++|+.++.++. .+.++++|++|++++|.+. .+| .+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~n~  242 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMI-QSQ  242 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECT-TCC
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-cCCEEECC-CCc
Confidence            344555555555 3566666666666666443 444 355666666666666666544 45555555 66666665 444


Q ss_pred             CCCC-----CCC--cceecCc---------cccccCCCCCeecCCCC-c
Q 039239          127 GDKQ-----MGL--LLPITLS---------IDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       127 ~~~~-----~~~--L~~l~L~---------~~l~~l~~L~~L~Ls~N-l  158 (323)
                      ....     ..+  |+.+++.         ..+..+++|+.|+|++| +
T Consensus       243 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            2110     011  3333332         34678999999999999 6

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=1.1e-14  Score=130.78  Aligned_cols=164  Identities=22%  Similarity=0.233  Sum_probs=120.6

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCcccccccccc-ccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|. ++.++. ++.+++|++|++++|...+ ++.+.....++  ++++| .++.+|+. +.++++|++|++++|.+
T Consensus        46 L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A           46 IIANNSD-IKSVQG-IQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQL  121 (272)
T ss_dssp             EECTTSC-CCCCTT-GGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eeeCCCC-cccccc-cccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcC
Confidence            6777776 455664 7889999999999976544 44332222233  34454 55666654 68899999999999988


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+. +..++.+++|++|++++|
T Consensus       122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDLS-YNQ-------LQSLP-EGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEECC-CCC-------cCccC-HHHhcCCccCCEEECCCC
Confidence            877777789999999999999999887654 57888 99999999 887       66542 234678899999999999


Q ss_pred             -c-ccCccccccccchhhhhhhhhhh
Q 039239          158 -F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 -l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       + .+|+..+..+  ++|+.+++..|
T Consensus       192 ~l~~~~~~~~~~l--~~L~~L~l~~N  215 (272)
T 3rfs_A          192 QLKSVPDGVFDRL--TSLQYIWLHDN  215 (272)
T ss_dssp             CCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred             cCCccCHHHHhCC--cCCCEEEccCC
Confidence             8 7776555555  66777766665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=5.7e-16  Score=160.44  Aligned_cols=148  Identities=18%  Similarity=0.231  Sum_probs=121.1

Q ss_pred             CEEecCCCCCC-----------------cCCcccC--CCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccc--
Q 039239            1 MLDLSDCKSLK-----------------SLPAEIS--NLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLK--   56 (323)
Q Consensus         1 ~L~Ls~n~~l~-----------------~lP~~i~--~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~--   56 (323)
                      +|+|++|.+.+                 .+|..++  ++++|++|+|++|...+.+|..++.+.   ..++++|..+.  
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~  531 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA  531 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence            38899999777                 3999888  999999999999999999998776654   34456665344  


Q ss_pred             cccccccCCC-------CCCEEEeeCCCCCCCCCc--ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCC
Q 039239           57 SLPSSICKLK-------SLKVLNLDGCSNIQKLPH--ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRG  127 (323)
Q Consensus        57 ~lP~~i~~L~-------~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~  127 (323)
                      .+|..+++++       +|++|++++|.+. .+|.  .++++++|++|++++|.++.+| .+..++ +|+.|+++ +|. 
T Consensus       532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~-~L~~L~Ls-~N~-  606 (876)
T 4ecn_A          532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNV-KLTDLKLD-YNQ-  606 (876)
T ss_dssp             HHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTS-EESEEECC-SSC-
T ss_pred             cchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCC-cceEEECc-CCc-
Confidence            5888776665       9999999998877 8888  8999999999999999998888 888888 99999998 887 


Q ss_pred             CCCCCCcceecCccccccCCC-CCeecCCCC-c-ccC
Q 039239          128 DKQMGLLLPITLSIDGLHMTD-LRHFDLSGN-F-KLD  161 (323)
Q Consensus       128 ~~~~~~L~~l~L~~~l~~l~~-L~~L~Ls~N-l-~lP  161 (323)
                            +..  +|..+..+++ |++|++++| + .+|
T Consensus       607 ------l~~--lp~~l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          607 ------IEE--IPEDFCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             ------CSC--CCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred             ------ccc--chHHHhhccccCCEEECcCCCCCcCc
Confidence                  663  3777788888 888888888 7 777

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.59  E-value=4.2e-15  Score=143.08  Aligned_cols=167  Identities=19%  Similarity=0.171  Sum_probs=93.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccc-cccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~   77 (323)
                      |+|++|++.+..|..+.++++|++|+|++|...+..+..+..+. ++  ++++ +.+..+|. .+.++++|++|++++|+
T Consensus       104 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~  182 (452)
T 3zyi_A          104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELK  182 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             EECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCC
Confidence            67777776555556677777777777777654433333333322 22  2223 23334433 34444555555555444


Q ss_pred             CCCCCCc-----------------------ccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCC
Q 039239           78 NIQKLPH-----------------------ELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGL  133 (323)
Q Consensus        78 ~~~~lp~-----------------------~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~  133 (323)
                      .++.++.                       .+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.       
T Consensus       183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~n~-------  253 (452)
T 3zyi_A          183 KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVM-NSQ-------  253 (452)
T ss_dssp             TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECT-TSC-------
T ss_pred             CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCcc-CCCEEEeC-CCc-------
Confidence            4444433                       244444555555555555433 34455555 55555555 444       


Q ss_pred             cceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          134 LLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       134 L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      +..+. +..+..+++|++|+|++| + .+|+..+..+  .+|+.+++..|
T Consensus       254 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N  300 (452)
T 3zyi_A          254 VSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPL--RYLVELHLHHN  300 (452)
T ss_dssp             CCEEC-TTTTTTCTTCCEEECCSSCCSCCCTTSSTTC--TTCCEEECCSS
T ss_pred             CceEC-HHHhcCCCCCCEEECCCCcCCccChHHhccc--cCCCEEEccCC
Confidence            44332 355778888999999988 8 8876555555  67777777766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=5.7e-15  Score=132.77  Aligned_cols=145  Identities=21%  Similarity=0.164  Sum_probs=107.0

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccccc-ccCCCCCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSS-ICKLKSLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n   76 (323)
                      +|++++|++.+ ++ .++.+++|++|++++|...+..+..++.+. +  .++++| .+..+|+. ++++++|++|++++|
T Consensus        67 ~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A           67 YLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN  143 (272)
T ss_dssp             EEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC
Confidence            37888888544 44 588899999999999866655555444433 3  344554 45566554 688899999999998


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLS  155 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls  155 (323)
                      .+.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+. +..+..+++|++|+++
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRLY-QNQ-------LKSVP-DGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECC
T ss_pred             ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEECC-CCc-------CCccC-HHHHhCCcCCCEEEcc
Confidence            87766666678899999999999998877654 57788 89999998 887       55542 2446788999999999


Q ss_pred             CC-c
Q 039239          156 GN-F  158 (323)
Q Consensus       156 ~N-l  158 (323)
                      +| +
T Consensus       214 ~N~~  217 (272)
T 3rfs_A          214 DNPW  217 (272)
T ss_dssp             SSCB
T ss_pred             CCCc
Confidence            99 6

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.59  E-value=3.6e-15  Score=143.01  Aligned_cols=39  Identities=26%  Similarity=0.148  Sum_probs=24.5

Q ss_pred             EEecCCCCCCcCCcc-cCCCCCCCEEeeeCCCCCccCCCC
Q 039239            2 LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKRLPEF   40 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~-i~~L~~L~~L~Ls~c~~l~~~p~~   40 (323)
                      |+|++|.+.+..|.. ++++++|++|++++|...+..|..
T Consensus       134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  173 (455)
T 3v47_A          134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED  173 (455)
T ss_dssp             EECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred             EECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh
Confidence            566777655555554 566777777777776655554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=9.5e-15  Score=132.88  Aligned_cols=162  Identities=20%  Similarity=0.193  Sum_probs=116.6

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      +++++++ +..+|..+.  ++++.|+|++|...+..|..+..+. ++.  +++ +.+..+|.. +.+++|++|++++|.+
T Consensus        15 l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~L~Ls~N~l   89 (290)
T 1p9a_G           15 VNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGTLDLSHNQL   89 (290)
T ss_dssp             EECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCEEECCSSCC
T ss_pred             EECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCEEECCCCcC
Confidence            5677766 567787664  7889999999776655555554443 333  334 456677664 7788899999988765


Q ss_pred             CCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                       ..+|..+..+++|++|++++|.++.+| ..+..++ +|+.|+++ +|.       ++.+. +..+..+++|+.|++++|
T Consensus        90 -~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           90 -QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLK-GNE-------LKTLP-PGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             -SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECT-TSC-------CCCCC-TTTTTTCTTCCEEECTTS
T ss_pred             -CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECC-CCC-------CCccC-hhhcccccCCCEEECCCC
Confidence             477888888889999999999988776 5678888 89999998 787       66552 244678889999999999


Q ss_pred             -c-ccCccccccccchhhhhhhhhhh
Q 039239          158 -F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 -l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       + .+|+..+..+  .+|+.+++..|
T Consensus       159 ~l~~l~~~~~~~l--~~L~~L~L~~N  182 (290)
T 1p9a_G          159 NLTELPAGLLNGL--ENLDTLLLQEN  182 (290)
T ss_dssp             CCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred             cCCccCHHHhcCc--CCCCEEECCCC
Confidence             8 8886555555  56666655444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=7.4e-15  Score=135.57  Aligned_cols=119  Identities=19%  Similarity=0.148  Sum_probs=74.3

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|.+.+..|..+.++++|++|++++|...+..|..++.+. ++  ++++ +.++.+|..+.  ++|++|++++|.+
T Consensus        59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~n~i  135 (332)
T 2ft3_A           59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHDNRI  135 (332)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCCCcc
Confidence            67888875555566678888888888888776665565555443 33  3333 34566776654  6777777777666


Q ss_pred             CCCCCcccCCCcccceeeccccccc---cCChhHHhcccccceeEccCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATT---EVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~---~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+..+..++.+++|++|++++|.++   ..|..+..+  +|+.|+++ +|.
T Consensus       136 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~-~n~  183 (332)
T 2ft3_A          136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRIS-EAK  183 (332)
T ss_dssp             CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCC-SSB
T ss_pred             CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECc-CCC
Confidence            5544455677777777777777664   224444433  56666666 554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=5.7e-15  Score=128.90  Aligned_cols=143  Identities=21%  Similarity=0.320  Sum_probs=101.1

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      ++++++. +..+|..+.  ++|+.|++++|.                      +..+|+ .+.++++|++|+|++|.+.+
T Consensus        16 v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~----------------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~   70 (220)
T 2v9t_B           16 VDCRGKG-LTEIPTNLP--ETITEIRLEQNT----------------------IKVIPPGAFSPYKKLRRIDLSNNQISE   70 (220)
T ss_dssp             EECTTSC-CSSCCSSCC--TTCCEEECCSSC----------------------CCEECTTSSTTCTTCCEEECCSSCCCE
T ss_pred             EEcCCCC-cCcCCCccC--cCCCEEECCCCc----------------------CCCcCHhHhhCCCCCCEEECCCCcCCC
Confidence            4566655 667787654  788889888853                      334443 46677788888888887777


Q ss_pred             CCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                      ..|..|..+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+. +..+..+++|++|+|++| +
T Consensus        71 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           71 LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF-SLQLLLLN-ANK-------INCLR-VDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred             cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC-CCCEEECC-CCC-------CCEeC-HHHcCCCCCCCEEECCCCcC
Confidence            7777788888888888888888777665 45677 88888888 776       55542 356777788888888888 7


Q ss_pred             -ccCccccccccchhhhhhhhhhh
Q 039239          159 -KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       159 -~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       .+|+..+..+  .+|+.+++..|
T Consensus       141 ~~~~~~~~~~l--~~L~~L~L~~N  162 (220)
T 2v9t_B          141 QTIAKGTFSPL--RAIQTMHLAQN  162 (220)
T ss_dssp             SCCCTTTTTTC--TTCCEEECCSS
T ss_pred             CEECHHHHhCC--CCCCEEEeCCC
Confidence             7775555555  66666666665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.58  E-value=4.9e-15  Score=139.68  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=72.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~   77 (323)
                      |++++|.+.+..|..++.+++|++|+|++|...+..|..++.+. ++  ++++ +.++.+|.. +.++++|++|++++|.
T Consensus        74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A           74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC-CccCcCCHHHhcCCCCCcEEECCCCc
Confidence            66777765444445667777777777777665555555444433 33  3333 345666665 3667777777777777


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~  122 (323)
                      +.+..|..++.+++|++|++++|.++.++  +..++ +|+.|+++
T Consensus       153 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~-~L~~L~l~  194 (390)
T 3o6n_A          153 LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIP-SLFHANVS  194 (390)
T ss_dssp             CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCT-TCSEEECC
T ss_pred             cCccChhhccCCCCCCEEECCCCcCCccc--ccccc-ccceeecc
Confidence            66666666777777777777777776554  33444 55555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.58  E-value=5.9e-15  Score=142.69  Aligned_cols=119  Identities=20%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccc-------------------
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLP-------------------   59 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP-------------------   59 (323)
                      |+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. ++  ++++ +.+..+|                   
T Consensus        37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCc
Confidence            55666654444445555566666666666544444444333322 21  1222 2233333                   


Q ss_pred             ------ccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEcc
Q 039239           60 ------SSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSD  122 (323)
Q Consensus        60 ------~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~  122 (323)
                            ..+.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|. .+..++ +|+.|+++
T Consensus       116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~  184 (477)
T 2id5_A          116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLR  184 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT-TCCEEEEE
T ss_pred             cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC-CCcEEeCC
Confidence                  344444555555555554444444455555555555555555554443 344444 55555555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.58  E-value=5.3e-15  Score=132.90  Aligned_cols=123  Identities=20%  Similarity=0.160  Sum_probs=95.5

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccc-ccccCCCCCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLP-SSICKLKSLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n   76 (323)
                      +|++++|++.+..+..+.++++|++|++++|...+..+..+..+. +  .+++++ .+..++ ..+.++++|++|++++|
T Consensus        32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCC
Confidence            378999986655555788999999999999866555454444433 3  344554 455554 56889999999999998


Q ss_pred             CCCCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+.+..+..++.+++|++|++++|.++.  +|..+..++ +|+.|+++ +|.
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls-~N~  160 (276)
T 2z62_A          111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLS-SNK  160 (276)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECC-SSC
T ss_pred             CccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECC-CCC
Confidence            8877766678999999999999999975  688999998 99999999 887

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=2.6e-15  Score=143.99  Aligned_cols=105  Identities=16%  Similarity=0.087  Sum_probs=71.4

Q ss_pred             CEEecCCCCCCcC-CcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccccccc--ccCCCCCCEEEee
Q 039239            1 MLDLSDCKSLKSL-PAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSS--ICKLKSLKVLNLD   74 (323)
Q Consensus         1 ~L~Ls~n~~l~~l-P~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~--i~~L~~L~~L~Ls   74 (323)
                      +|++++|...+.+ |..+.++++|++|+|++|...+..|..++.+.   ..++++|.-.+.+|..  +.++++|++|+++
T Consensus        58 ~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  137 (455)
T 3v47_A           58 FLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR  137 (455)
T ss_dssp             EEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred             EEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence            3778888776666 45577888888888888877776676665544   3334555433344444  7777778888888


Q ss_pred             CCCCCCCCCcc-cCCCcccceeeccccccccC
Q 039239           75 GCSNIQKLPHE-LGNLEALNSLYAKGIATTEV  105 (323)
Q Consensus        75 ~n~~~~~lp~~-l~~l~~L~~L~L~~n~i~~l  105 (323)
                      +|.+.+..|.. ++++++|++|++++|.++.+
T Consensus       138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             CCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            77777666665 67777777777777777543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=4.7e-15  Score=133.26  Aligned_cols=147  Identities=20%  Similarity=0.212  Sum_probs=118.1

Q ss_pred             CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcc
Q 039239           10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHE   85 (323)
Q Consensus        10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~   85 (323)
                      +..+|..+.  ++|++|++++|...+..+..+..+. +  .++++| .+..++. .+.++++|++|++++|.+.+..+..
T Consensus        19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            556887664  6899999999876655554554443 3  345554 5666655 6889999999999999988888888


Q ss_pred             cCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc
Q 039239           86 LGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR  162 (323)
Q Consensus        86 l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~  162 (323)
                      +.++++|++|++++|.+..++. .+..++ +|+.|+++ +|.       ++.+.+|..++++++|++|++++| + .+++
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVA-HNL-------IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECC-SSC-------CCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             hcCCccccEEECCCCCccccCchhcccCC-CCCEEECc-CCc-------cceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            9999999999999999987765 688898 99999999 888       777667888999999999999999 8 8876


Q ss_pred             cccccc
Q 039239          163 KEVRGI  168 (323)
Q Consensus       163 ~~L~~L  168 (323)
                      ..+..+
T Consensus       167 ~~~~~l  172 (276)
T 2z62_A          167 TDLRVL  172 (276)
T ss_dssp             GGGHHH
T ss_pred             HHhhhh
Confidence            555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.57  E-value=2e-15  Score=137.61  Aligned_cols=167  Identities=19%  Similarity=0.158  Sum_probs=99.9

Q ss_pred             EEecCCCCCCcCCcc-cCCCCCCCEEeeeCCCCCcc--CCCCc---CCcchhhhcCccccccccccccCCCCCCEEEeeC
Q 039239            2 LDLSDCKSLKSLPAE-ISNLESLKKLNLSGCSKLKR--LPEFS---SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDG   75 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~-i~~L~~L~~L~Ls~c~~l~~--~p~~~---~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~   75 (323)
                      |++++|++ +.+|.. +.++++|++|+|++|.....  .|...   ..++..++++ +.+..+|..+.++++|++|++++
T Consensus        33 L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L~~L~l~~  110 (306)
T 2z66_A           33 LELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQH  110 (306)
T ss_dssp             EECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTT
T ss_pred             EECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC-CccccChhhcCCCCCCCEEECCC
Confidence            67777774 455544 56788888888887654421  12211   1122223333 34556677777777777777777


Q ss_pred             CCCCCCCC-cccCCCcccceeecccccccc-CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeec
Q 039239           76 CSNIQKLP-HELGNLEALNSLYAKGIATTE-VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFD  153 (323)
Q Consensus        76 n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~-lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~  153 (323)
                      |.+.+..+ ..+..+++|++|++++|.++. .|..+..++ +|+.|+++ +|.       +....+|..+..+++|++|+
T Consensus       111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMA-GNS-------FQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECT-TCE-------EGGGEECSCCTTCTTCCEEE
T ss_pred             CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECC-CCc-------cccccchhHHhhCcCCCEEE
Confidence            66554433 456777777777777777753 345566666 77777777 665       44312255667777777777


Q ss_pred             CCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          154 LSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       154 Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      +++| + .+++..+..+  ++|+.+++..|
T Consensus       182 Ls~n~l~~~~~~~~~~l--~~L~~L~L~~N  209 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSL--SSLQVLNMSHN  209 (306)
T ss_dssp             CTTSCCCEECTTTTTTC--TTCCEEECTTS
T ss_pred             CCCCCcCCcCHHHhcCC--CCCCEEECCCC
Confidence            7777 6 6654444444  45555554444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=8.4e-15  Score=134.96  Aligned_cols=165  Identities=19%  Similarity=0.216  Sum_probs=127.7

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcC-CcchhhhcCccccccccc-cccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS-AGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~-~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~   78 (323)
                      +|++++|++.+..|..++++++|++|++++|. +..+|.... .++..+++++ .+..++. .+.++++|++|++++|.+
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l  157 (330)
T 1xku_A           80 TLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPL  157 (330)
T ss_dssp             EEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECCCC-cccccCHhHhcCCccccEEECCCCcC
Confidence            48999999777779889999999999999976 446765433 3333445554 4555554 588999999999999987


Q ss_pred             CC--CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           79 IQ--KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        79 ~~--~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      ..  ..+..++.+++|++|++++|.++.+|..+.  + +|+.|+++ +|.       ++.+. +..+..+++|++|++++
T Consensus       158 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--P-SLTELHLD-GNK-------ITKVD-AASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             CGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--T-TCSEEECT-TSC-------CCEEC-TGGGTTCTTCCEEECCS
T ss_pred             CccCcChhhccCCCCcCEEECCCCccccCCcccc--c-cCCEEECC-CCc-------CCccC-HHHhcCCCCCCEEECCC
Confidence            53  677889999999999999999999987664  5 99999999 887       66552 46788899999999999


Q ss_pred             C-c-ccCccccccccchhhhhhhhhhh
Q 039239          157 N-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       157 N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      | + .+++..+..+  ++|+.+++..|
T Consensus       226 n~l~~~~~~~~~~l--~~L~~L~L~~N  250 (330)
T 1xku_A          226 NSISAVDNGSLANT--PHLRELHLNNN  250 (330)
T ss_dssp             SCCCEECTTTGGGS--TTCCEEECCSS
T ss_pred             CcCceeChhhccCC--CCCCEEECCCC
Confidence            9 8 7776566555  66666665444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.57  E-value=1.7e-14  Score=126.64  Aligned_cols=142  Identities=25%  Similarity=0.245  Sum_probs=88.7

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~   77 (323)
                      ++.++++ ++.+|..+.  ++|++|+|++|...+..|..+..+. ++  ++++ +.++.+|.. +.++++|++|+|++|.
T Consensus        24 v~c~~~~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           24 VDCRSKR-HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             EECTTSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             eEccCCC-cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCc
Confidence            4555555 778887664  8999999999876665555443333 22  2333 334555543 4566667777777666


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +.+..+..+..+++|++|++++|.++.+|..+..++ +|+.|+++ +|.       ++.+. +..+..+++|+.|++++|
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT-HLTHLALD-QNQ-------LKSIP-HGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCT-TCSEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECTTS
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCC-CCCEEECC-CCc-------CCccC-HHHHhCCCCCCEEEeeCC
Confidence            555444556666677777777777666666666666 67777776 665       44441 134566666777777766

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.57  E-value=1.7e-15  Score=138.98  Aligned_cols=150  Identities=16%  Similarity=0.152  Sum_probs=105.9

Q ss_pred             CEEecCCCCCCcCCccc--CCCCCCCEEeeeCCCCCccCCCCcCCc--------chhhhcCcccccccc-ccccCCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEI--SNLESLKKLNLSGCSKLKRLPEFSSAG--------NIEEICGCKRLKSLP-SSICKLKSLK   69 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i--~~L~~L~~L~Ls~c~~l~~~p~~~~~l--------~l~~L~~~~~l~~lP-~~i~~L~~L~   69 (323)
                      +|+|++|++.+.+|..+  +.+++|++|+|++|...+. |..++.+        +..+++++. +..++ ..++++++|+
T Consensus        99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALS  176 (312)
T ss_dssp             EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCC
T ss_pred             EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCC
Confidence            37888888777888876  7889999999998776665 6544332        233445544 44454 6788889999


Q ss_pred             EEEeeCCCCCCC--CCccc--CCCcccceeeccccccccCC---hh-HHhcccccceeEccCCCCCCCCCCCcceecCcc
Q 039239           70 VLNLDGCSNIQK--LPHEL--GNLEALNSLYAKGIATTEVP---SS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI  141 (323)
Q Consensus        70 ~L~Ls~n~~~~~--lp~~l--~~l~~L~~L~L~~n~i~~lP---~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~  141 (323)
                      +|++++|.+.+.  +|..+  +.+++|++|++++|.++.+|   .. +..++ +|+.|+++ +|.       ++...-..
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~~~~~~  247 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLS-HNS-------LRDAAGAP  247 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECT-TSC-------CCSSCCCS
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECC-CCc-------CCcccchh
Confidence            999998887765  34444  78888999999999887443   23 34567 88999998 777       44432113


Q ss_pred             ccccCCCCCeecCCCC-c-ccC
Q 039239          142 DGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       142 ~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      .+..+++|++|++++| + .+|
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLKQVP  269 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCSSCC
T ss_pred             hhhhcCCCCEEECCCCccChhh
Confidence            4556788888888888 7 777

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.57  E-value=1.5e-14  Score=126.99  Aligned_cols=146  Identities=19%  Similarity=0.143  Sum_probs=115.0

Q ss_pred             CCEEeeeCCCCCccCCCCc-CCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc
Q 039239           23 LKKLNLSGCSKLKRLPEFS-SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA  101 (323)
Q Consensus        23 L~~L~Ls~c~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~  101 (323)
                      .+.++.++ ..++.+|..+ ..+...+++++.--+..|..+.++++|++|+|++|.+.+..+..+..+++|++|++++|.
T Consensus        21 ~~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            56788877 5677777643 344455666655444447778999999999999998755555667999999999999999


Q ss_pred             cccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhh
Q 039239          102 TTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQL  178 (323)
Q Consensus       102 i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l  178 (323)
                      ++.+|.. +..++ +|+.|+++ +|.       ++.+  |..+..+++|++|++++| + .+|+..+..+  .+|+.+++
T Consensus       100 l~~l~~~~~~~l~-~L~~L~Ls-~N~-------l~~l--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l  166 (229)
T 3e6j_A          100 LTVLPSAVFDRLV-HLKELFMC-CNK-------LTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFDRL--SSLTHAYL  166 (229)
T ss_dssp             CCCCCTTTTTTCT-TCCEEECC-SSC-------CCSC--CTTGGGCTTCSEEECCSSCCCCCCTTTTTTC--TTCCEEEC
T ss_pred             CCccChhHhCcch-hhCeEecc-CCc-------cccc--CcccccCCCCCEEECCCCcCCccCHHHHhCC--CCCCEEEe
Confidence            9988765 57888 99999999 888       7755  788899999999999999 8 8886666666  77888877


Q ss_pred             hhhh
Q 039239          179 MAAA  182 (323)
Q Consensus       179 ~~n~  182 (323)
                      ..|+
T Consensus       167 ~~N~  170 (229)
T 3e6j_A          167 FGNP  170 (229)
T ss_dssp             TTSC
T ss_pred             eCCC
Confidence            7763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.56  E-value=1.6e-15  Score=138.19  Aligned_cols=121  Identities=20%  Similarity=0.153  Sum_probs=62.6

Q ss_pred             EEecCCCCCC--cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccc--cccCCCCCCEEEee
Q 039239            2 LDLSDCKSLK--SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPS--SICKLKSLKVLNLD   74 (323)
Q Consensus         2 L~Ls~n~~l~--~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~--~i~~L~~L~~L~Ls   74 (323)
                      |++++|++..  ..|..+..+++|++|++++|... .+|..+..+. ++.  +++ +.+..++.  .+.++++|++|+++
T Consensus        57 L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~  134 (306)
T 2z66_A           57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDIS  134 (306)
T ss_dssp             EECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECT
T ss_pred             EECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECC
Confidence            5666665432  22444445666666666665432 3443222222 222  222 23333432  45556666666666


Q ss_pred             CCCCCCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCC
Q 039239           75 GCSNIQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +|.+.+..|..++.+++|++|++++|.+..  +|..+..++ +|+.|+++ +|.
T Consensus       135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls-~n~  186 (306)
T 2z66_A          135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLS-QCQ  186 (306)
T ss_dssp             TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECT-TSC
T ss_pred             CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-CCCEEECC-CCC
Confidence            665555555555566666666666666543  455555555 66666666 554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.56  E-value=2.9e-14  Score=122.80  Aligned_cols=143  Identities=21%  Similarity=0.186  Sum_probs=95.7

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSS-ICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~   77 (323)
                      ++.+++. +..+|..+  .++|++|++++|...+..+..+..+. ++.  +++ +.++.+|.. +.++++|++|++++|.
T Consensus        12 v~c~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           12 VECYSQG-RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EECCSSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCC-ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCc
Confidence            3445544 55677654  46899999999765543333333332 333  333 355666654 5678888888888887


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      +.+..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+. +..+..+++|++|++++
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~-------l~~~~-~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-QLKDLRLY-QNQ-------LKSVP-DGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECCS
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-cCCEEECC-CCc-------cceeC-HHHhccCCCccEEEecC
Confidence            7665555677888888888888888777654 56777 88888888 776       55441 23467788888888888


Q ss_pred             C-c
Q 039239          157 N-F  158 (323)
Q Consensus       157 N-l  158 (323)
                      | +
T Consensus       158 N~~  160 (208)
T 2o6s_A          158 NPW  160 (208)
T ss_dssp             CCB
T ss_pred             CCe
Confidence            8 5

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.56  E-value=2.2e-14  Score=128.68  Aligned_cols=164  Identities=20%  Similarity=0.204  Sum_probs=123.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~   77 (323)
                      +++++++ ++.+|..+.  ++|++|+|++|...+..+..+..+. ++  ++++ +.+..+|.. +.++++|++|++++|.
T Consensus        21 l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           21 VDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             EECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCCc
Confidence            6777776 567887664  7899999999775544444454443 33  3444 456778776 4789999999999998


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      +.+..+..+..+++|++|++++|.++.+|. .+..++ +|+.|+++ +|.       ++.+. +..++.+++|++|++++
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls-~n~-------l~~~~-~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLG-YNE-------LQSLP-KGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCS
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECC-CCc-------CCccC-HhHccCCcccceeEecC
Confidence            777666778899999999999999987764 567888 99999999 887       66552 23478899999999999


Q ss_pred             C-c-ccCccccccccchhhhhhhhhhh
Q 039239          157 N-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       157 N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      | + .+|+..+..+  .+|+.+++..|
T Consensus       167 n~l~~~~~~~~~~l--~~L~~L~L~~N  191 (270)
T 2o6q_A          167 NQLKRVPEGAFDKL--TELKTLKLDNN  191 (270)
T ss_dssp             SCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred             CcCcEeChhHhccC--CCcCEEECCCC
Confidence            9 8 8886556555  66666665544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.56  E-value=7e-15  Score=145.89  Aligned_cols=143  Identities=20%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             CCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcc
Q 039239           10 LKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHE   85 (323)
Q Consensus        10 l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~   85 (323)
                      +..+|..+.  +++++|+|++|...+-.|..+..+.   .++|++| .+..+|+ .|.++++|++|+|++|++.+..+..
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            445565442  4566666666543332233333322   2333443 4555544 4667777777777776655444455


Q ss_pred             cCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc
Q 039239           86 LGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR  162 (323)
Q Consensus        86 l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~  162 (323)
                      |+++++|++|++++|.++.+|. .++.++ +|+.|+++ +|.       ++.+.+|..++.+++|++|++++| + .+++
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-~L~~L~Ls-~N~-------l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVA-HNL-------IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECC-SSC-------CCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCc-ccCeeccc-cCc-------cccCCCchhhccchhhhhhcccCcccccccc
Confidence            6777777777777777766654 466676 77777777 666       555555666667777777777777 6 5554


Q ss_pred             cc
Q 039239          163 KE  164 (323)
Q Consensus       163 ~~  164 (323)
                      ..
T Consensus       191 ~~  192 (635)
T 4g8a_A          191 TD  192 (635)
T ss_dssp             GG
T ss_pred             cc
Confidence            33

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=6.7e-15  Score=146.28  Aligned_cols=122  Identities=19%  Similarity=0.177  Sum_probs=83.7

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|.+.+..+..++.+++|++|++++|. +..+|+.+..+. ++  ++++|......|..+.++++|++|++++|.+
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            6788887666555668888888888888864 447776655443 33  3445433333355677788888888888777


Q ss_pred             CCCCCcc-cCCCcccceeeccccccccC---ChhHHhcccccceeEccCCCC
Q 039239           79 IQKLPHE-LGNLEALNSLYAKGIATTEV---PSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        79 ~~~lp~~-l~~l~~L~~L~L~~n~i~~l---P~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+.+|.. ++.+++|++|++++|.+..+   |..+..++ +|+.|+++ +|.
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~-~n~  387 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLS-YNE  387 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECC-SCS
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECC-CCc
Confidence            7666654 77777788888887777544   55677777 77777777 665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.55  E-value=1.7e-14  Score=133.08  Aligned_cols=167  Identities=17%  Similarity=0.135  Sum_probs=115.7

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCC--ccCCCCcCCcchhhhc-CccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKL--KRLPEFSSAGNIEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l--~~~p~~~~~l~l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|++.+..+..+.++++|++|++++|...  +..|..+..++++.+. ..+.++.+|..+.  ++|++|++++|.+
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i  205 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKI  205 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCC
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcC
Confidence            566666644333344677777777777776553  2444444443433332 2244666777654  7899999999888


Q ss_pred             CCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .+..|..+..+++|++|++++|.++.++ ..+..++ +|+.|+++ +|.       ++.+  |..+..+++|++|++++|
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~l--p~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLD-NNK-------LSRV--PAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECC-SSC-------CCBC--CTTGGGCTTCCEEECCSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECC-CCc-------Ceec--ChhhhcCccCCEEECCCC
Confidence            8877788999999999999999997775 4788888 99999999 887       6754  777889999999999999


Q ss_pred             -c-ccCcccccccc----chhhhhhhhhhh
Q 039239          158 -F-KLDRKEVRGIF----EDALQDIQLMAA  181 (323)
Q Consensus       158 -l-~lP~~~L~~L~----~~sL~~l~l~~n  181 (323)
                       + .+|+..+....    ..+++.+++..|
T Consensus       275 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          275 NITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             CCCccChhHccccccccccccccceEeecC
Confidence             8 88754443321    134455554444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.55  E-value=5.2e-15  Score=123.16  Aligned_cols=125  Identities=18%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             CCCCCEEeeeCCCCC-ccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCccccee
Q 039239           20 LESLKKLNLSGCSKL-KRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSL   95 (323)
Q Consensus        20 L~~L~~L~Ls~c~~l-~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L   95 (323)
                      .++|+.|++++|... +.+|..+..+.   ..++++|. +..+ ..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            466777777776433 23333221111   11111211 2233 334455555555555555544455444445555555


Q ss_pred             eccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecCcc----ccccCCCCCeecCCCC
Q 039239           96 YAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI----DGLHMTDLRHFDLSGN  157 (323)
Q Consensus        96 ~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~----~l~~l~~L~~L~Ls~N  157 (323)
                      ++++|.++.+|  ..+..++ +|+.|+++ +|.       +..+  +.    .+..+++|++|++++|
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~-~L~~L~l~-~N~-------l~~~--~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLE-CLKSLDLF-NCE-------VTNL--NDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCS-CCCEEECC-SSG-------GGTS--TTHHHHHHTTCSSCCEETTEET
T ss_pred             eccCCccCcchhHHHHhcCC-CCCEEEee-CCc-------Ccch--HHHHHHHHHhCccCcEecCCCC
Confidence            55555555443  4455555 55555555 444       3333  22    3445555555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.55  E-value=1.2e-14  Score=124.38  Aligned_cols=106  Identities=14%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccccc-CChhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTE-VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL  139 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L  139 (323)
                      .+..+++|++|++++|.+.+..|..++.+++|++|++++|.++. .|..+..++ +|+.|+++ +|..      +..+  
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~-~n~~------i~~~--  152 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-KVNSIDLS-YNGA------ITDI--  152 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECC-SCTB------CCCC--
T ss_pred             hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC-CCCEEEcc-CCCC------cccc--
Confidence            46667777777777777766667777777777777777777753 566777777 77777777 6642      2333  


Q ss_pred             ccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          140 SIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      + .+..+++|++|++++| + .++  .+..+  ++|+.+++..|
T Consensus       153 ~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l--~~L~~L~l~~N  191 (197)
T 4ezg_A          153 M-PLKTLPELKSLNIQFDGVHDYR--GIEDF--PKLNQLYAFSQ  191 (197)
T ss_dssp             G-GGGGCSSCCEEECTTBCCCCCT--TGGGC--SSCCEEEECBC
T ss_pred             H-hhcCCCCCCEEECCCCCCcChH--HhccC--CCCCEEEeeCc
Confidence            2 4667777777777777 6 654  34444  45555555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=125.57  Aligned_cols=145  Identities=17%  Similarity=0.195  Sum_probs=86.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      +++++|. ++.+|..+.  ..+++|+|++|...+..|.                    ..+.++++|++|++++|.+.+.
T Consensus        16 l~~s~n~-l~~iP~~~~--~~~~~L~L~~N~l~~~~~~--------------------~~~~~l~~L~~L~L~~N~i~~i   72 (220)
T 2v70_A           16 VDCSNQK-LNKIPEHIP--QYTAELRLNNNEFTVLEAT--------------------GIFKKLPQLRKINFSNNKITDI   72 (220)
T ss_dssp             EECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECCC--------------------CCGGGCTTCCEEECCSSCCCEE
T ss_pred             eEeCCCC-cccCccCCC--CCCCEEEcCCCcCCccCch--------------------hhhccCCCCCEEECCCCcCCEE
Confidence            5677776 566777553  4567888888543332221                    1245666666666666665555


Q ss_pred             CCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-  158 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-  158 (323)
                      .+..|+.+++|++|++++|.++.+|. .+..++ +|+.|+++ +|.       ++.+. +..+..+++|++|+|++| + 
T Consensus        73 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-SLKTLMLR-SNR-------ITCVG-NDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS-SCCEEECT-TSC-------CCCBC-TTSSTTCTTCSEEECTTSCCC
T ss_pred             CHHHhCCCCCCCEEECCCCccCccCHhHhcCCc-CCCEEECC-CCc-------CCeEC-HhHcCCCccCCEEECCCCcCC
Confidence            55566666666666766666665543 355666 66666666 665       44431 345566666666666666 6 


Q ss_pred             ccCccccccccchhhhhhhhhhh
Q 039239          159 KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       159 ~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      .+++..+..+  .+|+.+++..|
T Consensus       143 ~~~~~~~~~l--~~L~~L~L~~N  163 (220)
T 2v70_A          143 TVAPGAFDTL--HSLSTLNLLAN  163 (220)
T ss_dssp             CBCTTTTTTC--TTCCEEECCSC
T ss_pred             EECHHHhcCC--CCCCEEEecCc
Confidence            5554555544  55555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.55  E-value=2.3e-15  Score=140.18  Aligned_cols=144  Identities=23%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCcccccccccc-ccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSS-ICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~   77 (323)
                      |++++|++.+..+..+.++++|++|++++|...+..|..+..+. ++  ++++ +.++.+|.. ++++++|++|++++|.
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCCC
Confidence            45555553332233455566666666665544443343333322 22  2222 234444443 4555555555555554


Q ss_pred             CCCCCCc--ccCCCcccceeeccccc-cccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeec
Q 039239           78 NIQKLPH--ELGNLEALNSLYAKGIA-TTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFD  153 (323)
Q Consensus        78 ~~~~lp~--~l~~l~~L~~L~L~~n~-i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~  153 (323)
                      +. .+|.  .++.+++|++|++++|. ++.+ |..+..++ +|+.|+++ +|.       +... .+..++.+++|++|+
T Consensus       136 l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~-~n~-------l~~~-~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          136 YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEID-ASD-------LQSY-EPKSLKSIQNVSHLI  204 (353)
T ss_dssp             CS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEE-ETT-------CCEE-CTTTTTTCSEEEEEE
T ss_pred             Cc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCC-CCCEEECC-CCC-------cCcc-CHHHHhccccCCeec
Confidence            33 2333  45555555555555552 4443 33455555 55555555 444       2222 123344455555555


Q ss_pred             CCCC
Q 039239          154 LSGN  157 (323)
Q Consensus       154 Ls~N  157 (323)
                      +++|
T Consensus       205 l~~n  208 (353)
T 2z80_A          205 LHMK  208 (353)
T ss_dssp             EECS
T ss_pred             CCCC
Confidence            5555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.54  E-value=9.1e-15  Score=145.29  Aligned_cols=152  Identities=16%  Similarity=0.106  Sum_probs=107.1

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      +|+|++|.+.+..|..++++++|++|+|++|...+..|..++.+. +  .++++|.-....|..++++++|++|++++|.
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG  116 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred             EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence            378888887666677788888888888888877776676655544 3  3445554334446678888888888888887


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCC--eecC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLR--HFDL  154 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~--~L~L  154 (323)
                      +.+.-|..++++++|++|++++|.+..++ +.+..++ +|+.|+++ +|.       ++.+. +..++.+++|+  .|++
T Consensus       117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~-~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-KLKVLDFQ-NNA-------IHYLS-KEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT-TCCEEECC-SSC-------CCEEC-HHHHHTTTTCCSEEEEC
T ss_pred             cccCCcchhccCCcccEEECCCCcccccCcccccCCc-ccCEEEcc-cCc-------ccccC-hhhhhhhcccceeEEec
Confidence            77665677888888888888888887652 3333477 88888888 776       45442 34567777777  7788


Q ss_pred             CCC-c-ccCc
Q 039239          155 SGN-F-KLDR  162 (323)
Q Consensus       155 s~N-l-~lP~  162 (323)
                      ++| + .+++
T Consensus       187 ~~n~l~~~~~  196 (606)
T 3t6q_A          187 NGNDIAGIEP  196 (606)
T ss_dssp             TTCCCCEECT
T ss_pred             CCCccCccCh
Confidence            888 6 5553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=8.4e-15  Score=128.88  Aligned_cols=96  Identities=17%  Similarity=0.152  Sum_probs=45.7

Q ss_pred             cccccc-cccCCCCCCEEEeeC-CCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccc---eeEccCCC-CCC
Q 039239           55 LKSLPS-SICKLKSLKVLNLDG-CSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLY---ELSSDRSR-RGD  128 (323)
Q Consensus        55 l~~lP~-~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~---~L~l~~~n-~~~  128 (323)
                      ++.+|+ .+.++++|++|++++ |.+.+..+..+..+++|++|++++|.++.+|. +..++ +|+   .|+++ +| .  
T Consensus        68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~-~L~~L~~L~l~-~N~~--  142 (239)
T 2xwt_C           68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVY-STDIFFILEIT-DNPY--  142 (239)
T ss_dssp             CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCC-BCCSEEEEEEE-SCTT--
T ss_pred             cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccc-ccccccEEECC-CCcc--
Confidence            444443 344555555555554 33333333344555555555555555555554 44444 444   55555 44 3  


Q ss_pred             CCCCCcceecCccccccCCCCC-eecCCCC-c-ccC
Q 039239          129 KQMGLLLPITLSIDGLHMTDLR-HFDLSGN-F-KLD  161 (323)
Q Consensus       129 ~~~~~L~~l~L~~~l~~l~~L~-~L~Ls~N-l-~lP  161 (323)
                           ++.+. +..+..+++|+ +|++++| + .+|
T Consensus       143 -----l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C          143 -----MTSIP-VNAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             -----CCEEC-TTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             -----hhhcC-cccccchhcceeEEEcCCCCCcccC
Confidence                 33331 12344555555 5555555 4 444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.54  E-value=3.1e-15  Score=139.28  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=61.6

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHH-hcccccceeEccCCCCCCCCC--C------
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVV-RLNNKLYELSSDRSRRGDKQM--G------  132 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~-~l~~~L~~L~l~~~n~~~~~~--~------  132 (323)
                      +.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+. .++ +|+.|+++ +|......  .      
T Consensus       170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~-~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELR-DTDLDTFHFSELSTGET  247 (353)
T ss_dssp             TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-TEEEEEEE-SCBCTTCCCC------C
T ss_pred             ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc-cccEEECC-CCccccccccccccccc
Confidence            4444444444444444444444445555555555555555544443332 234 55555555 44411100  0      


Q ss_pred             --C-----cceec--------CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          133 --L-----LLPIT--------LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       133 --~-----L~~l~--------L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                        .     +..+.        +|..+.++++|++|++++| + .+|+..+..+  ++|+.+++..|
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L~L~~N  311 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL--TSLQKIWLHTN  311 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSS
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC--CCCCEEEeeCC
Confidence              0     11111        1234678899999999999 8 8885444555  77777777766

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=6.9e-15  Score=134.64  Aligned_cols=151  Identities=14%  Similarity=0.080  Sum_probs=112.7

Q ss_pred             CEEecCCCCCCcCCccc--CCCCCCCEEeeeCCCCCccCCCC-------cCCcchhhhcCccccccccccccCCCCCCEE
Q 039239            1 MLDLSDCKSLKSLPAEI--SNLESLKKLNLSGCSKLKRLPEF-------SSAGNIEEICGCKRLKSLPSSICKLKSLKVL   71 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i--~~L~~L~~L~Ls~c~~l~~~p~~-------~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L   71 (323)
                      +|++++|++.+..|..+  ..+++|++|+|++|...+..+..       ...++..++++|.-....|..++++++|++|
T Consensus        95 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  174 (310)
T 4glp_A           95 ELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSL  174 (310)
T ss_dssp             EEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEE
T ss_pred             EEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEE
Confidence            37899999888899887  88999999999999887765532       1223344556655434445678899999999


Q ss_pred             EeeCCCCCCC--CC--cccCCCcccceeeccccccccCChh----HHhcccccceeEccCCCCCCCCCCCcceecCcccc
Q 039239           72 NLDGCSNIQK--LP--HELGNLEALNSLYAKGIATTEVPSS----VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG  143 (323)
Q Consensus        72 ~Ls~n~~~~~--lp--~~l~~l~~L~~L~L~~n~i~~lP~~----i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l  143 (323)
                      ++++|.+.+.  ++  ..++.+++|++|++++|.++.+|..    +..++ +|++|+++ +|.       +.... |..+
T Consensus       175 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls-~N~-------l~~~~-p~~~  244 (310)
T 4glp_A          175 DLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLS-HNS-------LRATV-NPSA  244 (310)
T ss_dssp             ECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECT-TSC-------CCCCC-CSCC
T ss_pred             ECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECC-CCC-------CCccc-hhhH
Confidence            9999987653  22  3347889999999999999876653    46778 99999999 887       44432 4444


Q ss_pred             ccC---CCCCeecCCCC-c-ccC
Q 039239          144 LHM---TDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       144 ~~l---~~L~~L~Ls~N-l-~lP  161 (323)
                      ..+   ++|++|++++| + .+|
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCCSCC
T ss_pred             HhccCcCcCCEEECCCCCCCchh
Confidence            444   68999999999 8 777

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.53  E-value=2.7e-14  Score=141.85  Aligned_cols=88  Identities=24%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL  139 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L  139 (323)
                      .|+++++|++|++++|.+.+..|..|+++++|++|++++|.+..+| ..++.++ +|++|+++ +|.       +..+.+
T Consensus        75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~l  145 (606)
T 3vq2_A           75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-TLKKLNVA-HNF-------IHSCKL  145 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-TCCEEECC-SSC-------CCCCCC
T ss_pred             HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC-CCCEEeCC-CCc-------ccceec
Confidence            3445555555555555444444445555555555555555554433 3444444 55555555 444       333333


Q ss_pred             ccccccCCCCCeecCCCC
Q 039239          140 SIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~N  157 (323)
                      |..++++++|++|++++|
T Consensus       146 p~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A          146 PAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CGGGGTCTTCCEEECCSS
T ss_pred             hHhHhhcCCCCEEEccCC
Confidence            444445555555555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.53  E-value=2.6e-14  Score=125.77  Aligned_cols=122  Identities=18%  Similarity=0.128  Sum_probs=88.6

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc---hhhhcCccccccccc-cccCCCCCCEEEeeC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN---IEEICGCKRLKSLPS-SICKLKSLKVLNLDG   75 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~---l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~   75 (323)
                      +|++++|++.+..+..+.++++|++|++++|..++.+|. .+..+.   ..++++|+.++.+|+ .+.++++|++|++++
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~  114 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN  114 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC
Confidence            378899885554455788899999999999875666654 343332   334556677888874 577888899999888


Q ss_pred             CCCCCCCCcccCCCcccc---eeecccc-ccccCCh-hHHhcccccc-eeEccCCCC
Q 039239           76 CSNIQKLPHELGNLEALN---SLYAKGI-ATTEVPS-SVVRLNNKLY-ELSSDRSRR  126 (323)
Q Consensus        76 n~~~~~lp~~l~~l~~L~---~L~L~~n-~i~~lP~-~i~~l~~~L~-~L~l~~~n~  126 (323)
                      |.+.+ +|. ++.+++|+   +|++++| .++.+|. .+..++ +|+ .|+++ +|.
T Consensus       115 n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~-~n~  167 (239)
T 2xwt_C          115 TGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLY-NNG  167 (239)
T ss_dssp             ECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECC-SCC
T ss_pred             CCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcC-CCC
Confidence            87655 665 77777777   8888888 7877765 467777 888 88887 666

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.52  E-value=3.5e-14  Score=130.13  Aligned_cols=135  Identities=21%  Similarity=0.283  Sum_probs=87.0

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|. +..+|. +..+++|++|++++|.. ..++. +..+. ++  ++++| .++.+| .+..+++|++|++++|.+
T Consensus        46 L~l~~~~-i~~l~~-~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l  119 (308)
T 1h6u_A           46 LSAFGTG-VTTIEG-VQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQI  119 (308)
T ss_dssp             EECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCC
T ss_pred             EEeeCCC-ccCchh-hhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCC
Confidence            6777776 455664 77788888888888654 34444 33222 33  34443 355555 577788888888888775


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .+ ++ .+..+++|++|++++|.++.+|. +..++ +|+.|+++ +|.       ++.+  +. +..+++|++|++++|
T Consensus       120 ~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~-~L~~L~l~-~n~-------l~~~--~~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          120 TD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLT-NLQYLSIG-NAQ-------VSDL--TP-LANLSKLTTLKADDN  183 (308)
T ss_dssp             CC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCT-TCCEEECC-SSC-------CCCC--GG-GTTCTTCCEEECCSS
T ss_pred             CC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCC-CccEEEcc-CCc-------CCCC--hh-hcCCCCCCEEECCCC
Confidence            54 43 37778888888888888877765 67777 78888887 776       3333  22 455555555555555

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=141.82  Aligned_cols=149  Identities=15%  Similarity=0.132  Sum_probs=88.4

Q ss_pred             CCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccc--cccccccCCCCCCEEEeeCCCCCCCCCcc-cCCCcc
Q 039239           18 SNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLK--SLPSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLEA   91 (323)
Q Consensus        18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~l~~   91 (323)
                      ..+++|++|++++|...+.+|..++.+. ++  ++++|.-.+  .+|..++++++|++|++++|.+.+.+|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            3455666666666555555554443333 22  233322111  34455666666666666666655545543 555666


Q ss_pred             cceeecccccc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccc
Q 039239           92 LNSLYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGI  168 (323)
Q Consensus        92 L~~L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L  168 (323)
                      |++|++++|.+ +.+|..+.  + +|+.|+++ +|.       ++.+  |..+..+++|++|++++| + .+|+..+..+
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~-~L~~L~Ls-~N~-------l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  467 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--P-RIKVLDLH-SNK-------IKSI--PKQVVKLEALQELNVASNQLKSVPDGIFDRL  467 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--T-TCCEEECC-SSC-------CCCC--CGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCEEECcCCCCCcchhhhhc--c-cCCEEECC-CCc-------cccc--chhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence            66666666665 33443332  3 66666666 665       5544  677778999999999999 8 8885545555


Q ss_pred             cchhhhhhhhhhh
Q 039239          169 FEDALQDIQLMAA  181 (323)
Q Consensus       169 ~~~sL~~l~l~~n  181 (323)
                        ++|+.+++..|
T Consensus       468 --~~L~~L~l~~N  478 (520)
T 2z7x_B          468 --TSLQKIWLHTN  478 (520)
T ss_dssp             --TTCCEEECCSS
T ss_pred             --CcccEEECcCC
Confidence              77777777666

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.51  E-value=4.1e-14  Score=136.75  Aligned_cols=175  Identities=22%  Similarity=0.205  Sum_probs=108.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~   77 (323)
                      |++++|.+.+..|..+.++++|++|+|++|...+..+..+..+.   ..++.++. +..+ +..+.++++|+.|++++|.
T Consensus       133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCT
T ss_pred             EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCc
Confidence            78888887666677788888899999888755443322232222   22333432 3333 3356667777777777776


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCC-----CCC--cceecC---------c
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQ-----MGL--LLPITL---------S  140 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~-----~~~--L~~l~L---------~  140 (323)
                      ..+.+|.......+|++|++++|.++.+|. .+..++ +|+.|+++ +|.....     ..+  |+.+++         +
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLS-YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECC-SSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred             cccccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECC-CCcCCccChhhccccccCCEEECCCCccceECH
Confidence            666666655555566666666666666653 455666 66666666 5542110     000  333322         3


Q ss_pred             cccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          141 IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       141 ~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      ..+..+++|++|++++| + .+|+..+..+  .+|+.+++..|
T Consensus       290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~l~~N  330 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSV--GNLETLILDSN  330 (477)
T ss_dssp             TTBTTCTTCCEEECCSSCCSCCCGGGBSCG--GGCCEEECCSS
T ss_pred             HHhcCcccCCEEECCCCcCceeCHhHcCCC--cccCEEEccCC
Confidence            45778888889999888 8 8876555555  67777777766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.51  E-value=3.3e-14  Score=133.09  Aligned_cols=165  Identities=17%  Similarity=0.187  Sum_probs=123.5

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcC-Ccc-hh--hhcCccccccccc-cccCCCCCCEEEeeCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS-AGN-IE--EICGCKRLKSLPS-SICKLKSLKVLNLDGC   76 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~-~l~-l~--~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n   76 (323)
                      ++++++. +..+|..+.  ..++.|+|++|...+..+..+. .+. ++  ++++ +.+..+++ .+.++++|++|+|++|
T Consensus        23 l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           23 LSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECCCC
Confidence            5677766 677887664  5689999999866655554443 332 33  3444 45677764 6899999999999999


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCcccc----ccCCCCCe
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG----LHMTDLRH  151 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l----~~l~~L~~  151 (323)
                      .+.+..+..|..+++|++|++++|.|..+ |..+..++ +|+.|+++ +|.       ++.+  |..+    ..+++|+.
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~~~~l~~L~~  167 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLS-QNQ-------ISRF--PVELIKDGNKLPKLML  167 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC-SSC-------CCSC--CGGGTC----CTTCCE
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECC-CCc-------CCee--CHHHhcCcccCCcCCE
Confidence            88777677899999999999999999876 67889999 99999999 888       6665  4333    67999999


Q ss_pred             ecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          152 FDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       152 L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      |+|++| + .+|+..+..+....++.+++..|
T Consensus       168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             EECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             EECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            999999 8 88866666553223466666666

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.51  E-value=3.1e-14  Score=141.44  Aligned_cols=151  Identities=21%  Similarity=0.160  Sum_probs=122.9

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccc-cccccCCCCCCEEEeeCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSL-PSSICKLKSLKVLNLDGC   76 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n   76 (323)
                      +|+|++|++.+..|..+.++++|++|+|++|...+..|..+..+. +  .++++|. +..+ |..|+++++|++|++++|
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVET  114 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTS
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCC
Confidence            389999997776677899999999999999887776676665554 3  4455654 5555 888999999999999999


Q ss_pred             CCCCCCCcccCCCcccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCC----
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLR----  150 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~----  150 (323)
                      .+.+..|..++++++|++|++++|.+.  .+|..++.++ +|++|+++ +|.       ++.+. +..++.+++|+    
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls-~n~-------l~~~~-~~~~~~l~~L~~~l~  184 (606)
T 3vq2_A          115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLS-YNY-------IQTIT-VNDLQFLRENPQVNL  184 (606)
T ss_dssp             CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECC-SSC-------CCEEC-TTTTHHHHHCTTCCC
T ss_pred             ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-CCCEEEcc-CCc-------ceecC-hhhhhhhhccccccc
Confidence            988877788999999999999999996  5799999999 99999999 887       66552 34565555554    


Q ss_pred             eecCCCC-c-ccCc
Q 039239          151 HFDLSGN-F-KLDR  162 (323)
Q Consensus       151 ~L~Ls~N-l-~lP~  162 (323)
                      +|++++| + .+|+
T Consensus       185 ~L~l~~n~l~~~~~  198 (606)
T 3vq2_A          185 SLDMSLNPIDFIQD  198 (606)
T ss_dssp             EEECTTCCCCEECT
T ss_pred             eeeccCCCcceeCc
Confidence            7999999 8 7774

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=2.5e-14  Score=116.63  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             CCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccc
Q 039239           20 LESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG   99 (323)
Q Consensus        20 L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~   99 (323)
                      .++|+.|++++|...                    -+.+|..+..+++|++|++++|.+.+.  ..++.+++|++|++++
T Consensus        16 ~~~l~~L~l~~n~l~--------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~   73 (149)
T 2je0_A           16 PSDVKELVLDNSRSN--------------------EGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD   73 (149)
T ss_dssp             GGGCSEEECTTCBCB--------------------TTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCS
T ss_pred             CccCeEEEccCCcCC--------------------hhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCC
Confidence            466777777775322                    013445556667777777777665544  5666777777777777


Q ss_pred             ccccc-CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239          100 IATTE-VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       100 n~i~~-lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      |.++. +|..+..++ +|+.|+++ +|.       ++.+..+..++.+++|++|++++| + .+|
T Consensus        74 n~i~~~~~~~~~~l~-~L~~L~ls-~N~-------i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           74 NRVSGGLEVLAEKCP-NLTHLNLS-GNK-------IKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             SCCCSCTHHHHHHCT-TCCEEECT-TSC-------CCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             CcccchHHHHhhhCC-CCCEEECC-CCc-------CCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            77765 666666677 77777777 666       555432355667777777777777 6 555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.50  E-value=6.3e-14  Score=122.26  Aligned_cols=126  Identities=17%  Similarity=0.166  Sum_probs=106.1

Q ss_pred             CEEecCCCCCCcCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~   78 (323)
                      +|+|++|++.+..| ..+..+++|++|+|++|.                      ++.+++ .+.++++|++|+|++|.+
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~----------------------i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----------------------ITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----------------------CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCCc----------------------CCEECHHHhCCCCCCCEEECCCCcc
Confidence            38899999666545 347889999999999953                      344443 678899999999999998


Q ss_pred             CCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .+..|..++.+++|++|++++|.+..+ |..+..++ +|+.|+++ +|.       ++.+. |..+..+++|++|++++|
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLY-DNQ-------ITTVA-PGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECT-TSC-------CCCBC-TTTTTTCTTCCEEECCSC
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECC-CCc-------CCEEC-HHHhcCCCCCCEEEecCc
Confidence            888888899999999999999999876 67888999 99999999 888       66552 567889999999999999


Q ss_pred             -c
Q 039239          158 -F  158 (323)
Q Consensus       158 -l  158 (323)
                       +
T Consensus       164 ~l  165 (220)
T 2v70_A          164 PF  165 (220)
T ss_dssp             CE
T ss_pred             CC
Confidence             6

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.50  E-value=4.6e-14  Score=142.16  Aligned_cols=167  Identities=22%  Similarity=0.120  Sum_probs=95.5

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc---hhhhcCcccc----------------------
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN---IEEICGCKRL----------------------   55 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~---l~~L~~~~~l----------------------   55 (323)
                      |++++|++.+..|..+..+++|++|++++|...+.+|. .+..+.   ..++++|...                      
T Consensus       386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  465 (680)
T 1ziw_A          386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA  465 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence            67778877777777788888999999988877766663 232222   2223333321                      


Q ss_pred             ----ccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh---------hHHhcccccceeEcc
Q 039239           56 ----KSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS---------SVVRLNNKLYELSSD  122 (323)
Q Consensus        56 ----~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~---------~i~~l~~~L~~L~l~  122 (323)
                          +.+|..++++++|++|++++|.+.+..|..++.+++|++|++++|.++.++.         .+..++ +|+.|+++
T Consensus       466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~  544 (680)
T 1ziw_A          466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLE  544 (680)
T ss_dssp             CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECC
T ss_pred             ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECC
Confidence                2344455555555555555555544444445555555555555555543311         144455 55555555


Q ss_pred             CCCCCCCCCCCcceecCc-cccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          123 RSRRGDKQMGLLLPITLS-IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       123 ~~n~~~~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       +|.       ++.+  | ..+..+++|++|++++| + .+|+..+..+  .+|+.+++..|
T Consensus       545 -~N~-------l~~i--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~L~L~~N  594 (680)
T 1ziw_A          545 -SNG-------FDEI--PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ--VSLKSLNLQKN  594 (680)
T ss_dssp             -SSC-------CCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECTTS
T ss_pred             -CCC-------CCCC--CHHHcccccCcceeECCCCCCCcCCHhHhCCC--CCCCEEECCCC
Confidence             554       4433  3 24677777888888777 7 7775444444  55555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.50  E-value=4.6e-14  Score=137.74  Aligned_cols=145  Identities=20%  Similarity=0.163  Sum_probs=121.4

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCc--cCCCCcCCcc---hhhhcCcccccccccc-ccCCCCCCEEEee
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLK--RLPEFSSAGN---IEEICGCKRLKSLPSS-ICKLKSLKVLNLD   74 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~--~~p~~~~~l~---l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls   74 (323)
                      +|++++|++.+.+|..++.+++|++|++++|...+  .+|..+..+.   ..++++|...+.+|.. +..+++|++|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            37999999888899999999999999999987765  5555444433   4455665544448875 7889999999999


Q ss_pred             CCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccc-cccCCCCCeec
Q 039239           75 GCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSID-GLHMTDLRHFD  153 (323)
Q Consensus        75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~-l~~l~~L~~L~  153 (323)
                      +|.+.+.+|..+.  ++|++|++++|.++.+|..++.++ +|+.|+++ +|.       ++.+  |.. +..+++|++|+
T Consensus       408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVA-SNQ-------LKSV--PDGIFDRLTSLQKIW  474 (520)
T ss_dssp             SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCT-TCCEEECC-SSC-------CCCC--CTTTTTTCTTCCEEE
T ss_pred             CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCC-CCCEEECC-CCc-------CCcc--CHHHhccCCcccEEE
Confidence            9999888887764  789999999999999999999999 99999999 888       7765  654 88999999999


Q ss_pred             CCCC-c
Q 039239          154 LSGN-F  158 (323)
Q Consensus       154 Ls~N-l  158 (323)
                      +++| +
T Consensus       475 l~~N~~  480 (520)
T 2z7x_B          475 LHTNPW  480 (520)
T ss_dssp             CCSSCB
T ss_pred             CcCCCC
Confidence            9999 6

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.49  E-value=1.1e-13  Score=118.07  Aligned_cols=122  Identities=20%  Similarity=0.245  Sum_probs=101.0

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccccc--ccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS--ICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~--i~~L~~L~~L~Ls~n~~~   79 (323)
                      ++++++. ++.+|..+.  .+|++|++++|.                      ++.+++.  ++++++|++|+|++|.+.
T Consensus        13 l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~----------------------i~~~~~~~~~~~l~~L~~L~Ls~N~l~   67 (192)
T 1w8a_A           13 VDCTGRG-LKEIPRDIP--LHTTELLLNDNE----------------------LGRISSDGLFGRLPHLVKLELKRNQLT   67 (192)
T ss_dssp             EECTTSC-CSSCCSCCC--TTCSEEECCSCC----------------------CCSBCCSCSGGGCTTCCEEECCSSCCC
T ss_pred             EEcCCCC-cCcCccCCC--CCCCEEECCCCc----------------------CCccCCccccccCCCCCEEECCCCCCC
Confidence            6777877 577887665  388889888853                      4444442  778999999999999999


Q ss_pred             CCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      +..|..++.+++|++|++++|.++.++. .+..++ +|+.|+++ +|.       ++.+. |..+..+++|++|++++| 
T Consensus        68 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH-QLKTLNLY-DNQ-------ISCVM-PGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT-TCCEEECC-SSC-------CCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred             CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC-CCCEEECC-CCc-------CCeeC-HHHhhcCCCCCEEEeCCCC
Confidence            8889999999999999999999987754 588898 99999999 888       66652 567889999999999999 


Q ss_pred             c
Q 039239          158 F  158 (323)
Q Consensus       158 l  158 (323)
                      +
T Consensus       138 l  138 (192)
T 1w8a_A          138 F  138 (192)
T ss_dssp             B
T ss_pred             c
Confidence            6

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=1.3e-13  Score=120.21  Aligned_cols=126  Identities=21%  Similarity=0.217  Sum_probs=104.4

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccc-cccccCCCCCCEEEeeCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-PSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      .|+|++|++.+..+..+..+++|++|+|++|.                      +..+ |..+.++++|++|+|++|.+.
T Consensus        36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~----------------------i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ----------------------ISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECCSSC----------------------CCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             EEECCCCcCCCcCHhHhhCCCCCCEEECCCCc----------------------CCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            37899998666556678999999999999964                      3333 566888999999999999877


Q ss_pred             CCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      +..+..+..+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.       ++.+. +..+..+++|++|++++| 
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-NLNLLSLY-DNK-------LQTIA-KGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-CCCEEECC-CCc-------CCEEC-HHHHhCCCCCCEEEeCCCC
Confidence            55555678999999999999999877 56788999 99999999 888       66662 345788999999999999 


Q ss_pred             c
Q 039239          158 F  158 (323)
Q Consensus       158 l  158 (323)
                      +
T Consensus       164 ~  164 (220)
T 2v9t_B          164 F  164 (220)
T ss_dssp             E
T ss_pred             c
Confidence            6

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.49  E-value=3.7e-14  Score=140.11  Aligned_cols=149  Identities=17%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             CCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccc---cccccccCCCCCCEEEeeCCCCCCCCCcc-cCCCc
Q 039239           18 SNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLK---SLPSSICKLKSLKVLNLDGCSNIQKLPHE-LGNLE   90 (323)
Q Consensus        18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~---~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~-l~~l~   90 (323)
                      +.+++|++|++++|...+.+|..++.+. ++  +++++ .++   .+|..++++++|++|++++|.+.+.+|.. +..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            5677888888888777776676555443 33  34443 344   34456778888888888888777756653 67778


Q ss_pred             ccceeeccccccc-cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCcccccc
Q 039239           91 ALNSLYAKGIATT-EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRG  167 (323)
Q Consensus        91 ~L~~L~L~~n~i~-~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~  167 (323)
                      +|++|++++|.++ .+|..+.  + +|+.|+++ +|.       ++.+  |..+..+++|++|++++| + .+|+..+..
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~-~L~~L~L~-~N~-------l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  495 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--P-KVKVLDLH-NNR-------IMSI--PKDVTHLQALQELNVASNQLKSVPDGVFDR  495 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--T-TCSEEECC-SSC-------CCCC--CTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred             cCCEEECCCCCCCcchhhhhc--C-cCCEEECC-CCc-------Cccc--ChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence            8888888888873 4454432  4 78888888 777       6655  777779999999999999 8 998554555


Q ss_pred             ccchhhhhhhhhhhh
Q 039239          168 IFEDALQDIQLMAAA  182 (323)
Q Consensus       168 L~~~sL~~l~l~~n~  182 (323)
                      +  ++|+.+++..|+
T Consensus       496 l--~~L~~L~l~~N~  508 (562)
T 3a79_B          496 L--TSLQYIWLHDNP  508 (562)
T ss_dssp             C--TTCCCEECCSCC
T ss_pred             C--CCCCEEEecCCC
Confidence            5  778888777773

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=3.9e-14  Score=141.17  Aligned_cols=148  Identities=18%  Similarity=0.130  Sum_probs=86.9

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      |+|++|.+.+..|..++++++|++|+|++|... .+|. .++.+.   ..++++|...+..|..++++++|++|++++|.
T Consensus       104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            667777755555555667777777777776444 3333 333332   22334433222223345556666666665554


Q ss_pred             CCCCC-----------------------------------------------------------CcccCCCcccceeecc
Q 039239           78 NIQKL-----------------------------------------------------------PHELGNLEALNSLYAK   98 (323)
Q Consensus        78 ~~~~l-----------------------------------------------------------p~~l~~l~~L~~L~L~   98 (323)
                      +.+.-                                                           +..++.+++|++|+++
T Consensus       183 l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls  262 (597)
T 3oja_B          183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS  262 (597)
T ss_dssp             CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECC
Confidence            43210                                                           1235566777888888


Q ss_pred             ccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239           99 GIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus        99 ~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      +|.+..+ |..+..++ +|+.|+++ +|.       +..+  +..+..+++|+.|+|++| + .+|
T Consensus       263 ~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~  317 (597)
T 3oja_B          263 YNELEKIMYHPFVKMQ-RLERLYIS-NNR-------LVAL--NLYGQPIPTLKVLDLSHNHLLHVE  317 (597)
T ss_dssp             SSCCCEEESGGGTTCS-SCCEEECT-TSC-------CCEE--ECSSSCCTTCCEEECCSSCCCCCG
T ss_pred             CCccCCCCHHHhcCcc-CCCEEECC-CCC-------CCCC--CcccccCCCCcEEECCCCCCCccC
Confidence            8887544 67777777 88888888 776       5554  444555666777777776 6 655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.49  E-value=9.1e-14  Score=126.36  Aligned_cols=155  Identities=26%  Similarity=0.338  Sum_probs=116.0

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |++++|. +..+|. +..+++|++|++++|...+ ++. +..+. ++.  +++ +.++.+|. +..+++|++|++++|.+
T Consensus        51 L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~n~i  124 (291)
T 1h6t_A           51 IIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDE-NKVKDLSS-LKDLKKLKSLSLEHNGI  124 (291)
T ss_dssp             EECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCS-SCCCCGGG-GTTCTTCCEEECTTSCC
T ss_pred             EEccCCC-cccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCC-CcCCCChh-hccCCCCCEEECCCCcC
Confidence            7888887 555665 7889999999999976554 444 33322 333  344 34666665 88899999999999876


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      .+ + +.+..+++|++|++++|.++.+ ..+..++ +|+.|+++ +|.       ++.+  +. +..+++|++|++++| 
T Consensus       125 ~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~-~L~~L~L~-~N~-------l~~~--~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          125 SD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLT-KLDTLSLE-DNQ-------ISDI--VP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCT-TCSEEECC-SSC-------CCCC--GG-GTTCTTCCEEECCSSC
T ss_pred             CC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCC-CCCEEEcc-CCc-------cccc--hh-hcCCCccCEEECCCCc
Confidence            65 3 4688899999999999999887 5788888 99999999 887       6655  33 788999999999999 


Q ss_pred             c-ccCccccccccchhhhhhhhhhh
Q 039239          158 F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      + .+|  .+..+  ++|+.+++..|
T Consensus       190 i~~l~--~l~~l--~~L~~L~l~~n  210 (291)
T 1h6t_A          190 ISDLR--ALAGL--KNLDVLELFSQ  210 (291)
T ss_dssp             CCBCG--GGTTC--TTCSEEEEEEE
T ss_pred             CCCCh--hhccC--CCCCEEECcCC
Confidence            8 776  35555  66777766655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=4.8e-14  Score=138.70  Aligned_cols=149  Identities=21%  Similarity=0.177  Sum_probs=71.6

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCcccccccc-ccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLP-SSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~   77 (323)
                      |++++|++.+..+..+.++++|++|+|++|...+..|..+..+. +  .+++++. +..+| ..++++++|++|++++|.
T Consensus        33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~  111 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN  111 (570)
T ss_dssp             EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccc
Confidence            55555554444444455566666666666543333333333222 2  2223322 33333 345555555555555554


Q ss_pred             CCCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCC----Ce
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDL----RH  151 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L----~~  151 (323)
                      +.+.-+..++++++|++|++++|.+..  +|..+.+++ +|+.|+++ +|.       ++.+. +..++.+++|    +.
T Consensus       112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~-~n~-------l~~~~-~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLS-SNK-------IQSIY-CTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECT-TSC-------CCEEC-GGGGHHHHTCTTCCCE
T ss_pred             cccCCCccccccccccEEecCCCccceecChhhhcccC-CCCEEeCc-CCc-------cceec-HHHccchhccchhhhh
Confidence            433333345555555555555555542  455555555 55555555 554       33331 2334444444    55


Q ss_pred             ecCCCC-c-ccC
Q 039239          152 FDLSGN-F-KLD  161 (323)
Q Consensus       152 L~Ls~N-l-~lP  161 (323)
                      |++++| + .++
T Consensus       182 L~l~~n~l~~~~  193 (570)
T 2z63_A          182 LDLSLNPMNFIQ  193 (570)
T ss_dssp             EECTTCCCCEEC
T ss_pred             cccCCCCceecC
Confidence            555555 4 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=5.3e-14  Score=137.06  Aligned_cols=163  Identities=16%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccccccc----------------
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSS----------------   61 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~----------------   61 (323)
                      +|+|++|.+.+..|..++.+++|++|+|++|...+..|  ++.+.   ..++++| .++.+|..                
T Consensus        38 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N~l~~~  114 (487)
T 3oja_A           38 ELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRV  114 (487)
T ss_dssp             EEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCCCE
T ss_pred             EEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCCCCCcCEEECcCCcCCCC
Confidence            38999999777777789999999999999987665554  22222   2233333 33333321                


Q ss_pred             -ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccccc-CChhHH-hcccccceeEccCCCCCCCCCCCcceec
Q 039239           62 -ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTE-VPSSVV-RLNNKLYELSSDRSRRGDKQMGLLLPIT  138 (323)
Q Consensus        62 -i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~i~-~l~~~L~~L~l~~~n~~~~~~~~L~~l~  138 (323)
                       ...+++|++|++++|.+.+..|..++.+++|++|++++|.++. .|..+. .++ +|+.|+++ +|.       +..+ 
T Consensus       115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls-~N~-------l~~~-  184 (487)
T 3oja_A          115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQ-YNF-------IYDV-  184 (487)
T ss_dssp             EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECT-TSC-------CCEE-
T ss_pred             CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecC-CCc-------cccc-
Confidence             0134566666666666666666666666667777777776654 344554 556 67777776 665       4444 


Q ss_pred             CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          139 LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       139 L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                        .....+++|+.|+|++| + .+|+. +..+  ++|+.+++..|
T Consensus       185 --~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l--~~L~~L~Ls~N  224 (487)
T 3oja_A          185 --KGQVVFAKLKTLDLSSNKLAFMGPE-FQSA--AGVTWISLRNN  224 (487)
T ss_dssp             --ECCCCCTTCCEEECCSSCCCEECGG-GGGG--TTCSEEECTTS
T ss_pred             --cccccCCCCCEEECCCCCCCCCCHh-HcCC--CCccEEEecCC
Confidence              12234666666666666 6 55532 3333  44444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.48  E-value=1.5e-13  Score=125.85  Aligned_cols=157  Identities=22%  Similarity=0.344  Sum_probs=114.6

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      +|++++|. +..++. +..+++|++|+|++|. +..+|.+.....++  ++++| .+..+|. +..+++|++|++++|.+
T Consensus        67 ~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l  141 (308)
T 1h6u_A           67 GLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQI  141 (308)
T ss_dssp             EEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             EEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCcc
Confidence            37888887 445666 8889999999999976 44555433222233  34443 4666765 88899999999999876


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      .+. +. ++.+++|++|++++|.++.++. +..++ +|+.|+++ +|.       ++.+  + .+..+++|++|++++| 
T Consensus       142 ~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~-~L~~L~l~-~n~-------l~~~--~-~l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          142 TNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLS-KLTTLKAD-DNK-------ISDI--S-PLASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             CCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCCC--G-GGGGCTTCCEEECTTSC
T ss_pred             CcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCC-CCCEEECC-CCc-------cCcC--h-hhcCCCCCCEEEccCCc
Confidence            654 33 7888999999999999988876 78888 89999998 887       6655  2 3788899999999999 


Q ss_pred             c-ccCccccccccchhhhhhhhhhh
Q 039239          158 F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       158 l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      + .+++  +..+  ++|+.+++..|
T Consensus       207 l~~~~~--l~~l--~~L~~L~l~~N  227 (308)
T 1h6u_A          207 ISDVSP--LANT--SNLFIVTLTNQ  227 (308)
T ss_dssp             CCBCGG--GTTC--TTCCEEEEEEE
T ss_pred             cCcccc--ccCC--CCCCEEEccCC
Confidence            7 7662  4444  66666666555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.48  E-value=1.7e-13  Score=129.16  Aligned_cols=148  Identities=18%  Similarity=0.101  Sum_probs=92.3

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCC-cCCcc-hh--hhcCccccccc-cccccCCCCCCEEEeeC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEF-SSAGN-IE--EICGCKRLKSL-PSSICKLKSLKVLNLDG   75 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~-~~~l~-l~--~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~   75 (323)
                      +|++++|++.+..|..++++++|++|++++|... .+|.. +..+. ++  ++++| .+..+ |..+.++++|++|++++
T Consensus        97 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~  174 (390)
T 3o6n_A           97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS  174 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCS
T ss_pred             EEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCC
Confidence            3789999877666777888999999999997544 55543 34333 33  44554 34444 45688888889998888


Q ss_pred             CCCCCCCCcccCCC-------------------------------------cccceeeccccccccCChhHHhcccccce
Q 039239           76 CSNIQKLPHELGNL-------------------------------------EALNSLYAKGIATTEVPSSVVRLNNKLYE  118 (323)
Q Consensus        76 n~~~~~lp~~l~~l-------------------------------------~~L~~L~L~~n~i~~lP~~i~~l~~~L~~  118 (323)
                      |.+.+.-...+.++                                     ++|+.|++++|.++.+ ..+..++ +|+.
T Consensus       175 n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~-~L~~  252 (390)
T 3o6n_A          175 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYP-GLVE  252 (390)
T ss_dssp             SCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCT-TCSE
T ss_pred             CcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCC-CccE
Confidence            87654321212111                                     2344555555555443 3456666 7777


Q ss_pred             eEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239          119 LSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       119 L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      |+++ +|.       ++.+. +..+..+++|++|++++| + .+|
T Consensus       253 L~Ls-~n~-------l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~  288 (390)
T 3o6n_A          253 VDLS-YNE-------LEKIM-YHPFVKMQRLERLYISNNRLVALN  288 (390)
T ss_dssp             EECC-SSC-------CCEEE-SGGGTTCSSCCEEECCSSCCCEEE
T ss_pred             EECC-CCc-------CCCcC-hhHccccccCCEEECCCCcCcccC
Confidence            7777 665       44431 455667777777777777 6 554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=2.5e-13  Score=116.12  Aligned_cols=121  Identities=20%  Similarity=0.264  Sum_probs=98.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      ++++++. ++.+|..+.  ++|++|+|++|                      .+..+|..+.++++|++|+|++|.+.+.
T Consensus        15 l~~~~~~-l~~ip~~~~--~~l~~L~L~~n----------------------~i~~ip~~~~~l~~L~~L~Ls~N~i~~i   69 (193)
T 2wfh_A           15 VRCSNKG-LKVLPKGIP--RDVTELYLDGN----------------------QFTLVPKELSNYKHLTLIDLSNNRISTL   69 (193)
T ss_dssp             EECTTSC-CSSCCSCCC--TTCCEEECCSS----------------------CCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             EEcCCCC-CCcCCCCCC--CCCCEEECCCC----------------------cCchhHHHhhcccCCCEEECCCCcCCEe
Confidence            5666666 567776553  67888888874                      4556777788899999999999988887


Q ss_pred             CCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCc-cccccCCCCCeecCCCC-c
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS-IDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N-l  158 (323)
                      .+..|..+++|++|++++|.++.+|. .+..++ +|+.|+++ +|.       ++.+  + ..+..+++|+.|++++| +
T Consensus        70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~-~N~-------l~~~--~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK-SLRLLSLH-GND-------ISVV--PEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECC-SSC-------CCBC--CTTTTTTCTTCCEEECCSSCE
T ss_pred             CHhHccCCCCCCEEECCCCccCEeCHHHhCCCC-CCCEEECC-CCC-------CCee--ChhhhhcCccccEEEeCCCCe
Confidence            77889999999999999999987754 688888 99999999 888       6665  4 35788999999999999 5

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.47  E-value=2.1e-14  Score=140.90  Aligned_cols=122  Identities=24%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-h--hhhcCccccccccc-cccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-I--EEICGCKRLKSLPS-SICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l--~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~   77 (323)
                      |+|++|++.+..|..++++++|++|++++|...+..|..++.+. +  .++++| .+..+|+ .++++++|++|++++|.
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCCc
Confidence            67777775555566677777777777777766555555444433 2  234443 3444444 37777777777777776


Q ss_pred             CCC-CCCcccCCCcccceeeccccc-cccCC-hhHHhcccccceeEccCCCC
Q 039239           78 NIQ-KLPHELGNLEALNSLYAKGIA-TTEVP-SSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        78 ~~~-~lp~~l~~l~~L~~L~L~~n~-i~~lP-~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +.+ ..|..++++++|++|++++|. ++.+| ..+..++ +|++|+++ +|.
T Consensus       110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~-~n~  159 (549)
T 2z81_A          110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIK-ALS  159 (549)
T ss_dssp             CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEE-ETT
T ss_pred             ccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeecc-CCc
Confidence            654 355667777777777777776 45665 4666777 77777777 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.47  E-value=7.1e-14  Score=144.72  Aligned_cols=146  Identities=21%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccC-CCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRL-PEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~-p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      |||++|.+.+..|..+.++++|++|+|++|...+.+ |..++.+.   .+++++|.-....|..++++++|++|+|++|.
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence            555665554444555555666666666665544444 33333332   22233333222235555555555555555555


Q ss_pred             CCCCCCcc--cCCCcccceeeccccccccC--ChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccC--CCCCe
Q 039239           78 NIQKLPHE--LGNLEALNSLYAKGIATTEV--PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHM--TDLRH  151 (323)
Q Consensus        78 ~~~~lp~~--l~~l~~L~~L~L~~n~i~~l--P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l--~~L~~  151 (323)
                      +.+.+|..  ++++++|++|++++|.+..+  +..+++++ +|+.|+++ +|.       +..+. +..+..+  ++|+.
T Consensus       109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~L~Ls-~N~-------i~~~~-~~~l~~l~~~~L~~  178 (844)
T 3j0a_A          109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-SLKSIDFS-SNQ-------IFLVC-EHELEPLQGKTLSF  178 (844)
T ss_dssp             CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-SCCEEEEE-SSC-------CCCCC-SGGGHHHHHCSSCC
T ss_pred             CCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-CCCEEECC-CCc-------CCeeC-HHHcccccCCccce
Confidence            55544443  55555555555555555433  23455555 55555555 444       22221 2333333  55556


Q ss_pred             ecCCCC
Q 039239          152 FDLSGN  157 (323)
Q Consensus       152 L~Ls~N  157 (323)
                      |++++|
T Consensus       179 L~L~~n  184 (844)
T 3j0a_A          179 FSLAAN  184 (844)
T ss_dssp             CEECCS
T ss_pred             EECCCC
Confidence            666655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.46  E-value=9.3e-14  Score=127.08  Aligned_cols=163  Identities=16%  Similarity=0.049  Sum_probs=96.2

Q ss_pred             CEEecCCCCCCcCC----cccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccc--ccc--cccCCCCCC
Q 039239            1 MLDLSDCKSLKSLP----AEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKS--LPS--SICKLKSLK   69 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP----~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~--lP~--~i~~L~~L~   69 (323)
                      +|+|++|++.+..|    ..+..+++|++|+|++|...+..|..++.+.   ..++++|...+.  ++.  .++.+++|+
T Consensus       121 ~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~  200 (310)
T 4glp_A          121 SLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQ  200 (310)
T ss_dssp             SCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCC
T ss_pred             EEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCC
Confidence            36777777665544    2344577777888877766555555544433   334455443321  322  235677777


Q ss_pred             EEEeeCCCCCCCCCc----ccCCCcccceeeccccccccC-ChhHHhc---ccccceeEccCCCCCCCCCCCcceecCcc
Q 039239           70 VLNLDGCSNIQKLPH----ELGNLEALNSLYAKGIATTEV-PSSVVRL---NNKLYELSSDRSRRGDKQMGLLLPITLSI  141 (323)
Q Consensus        70 ~L~Ls~n~~~~~lp~----~l~~l~~L~~L~L~~n~i~~l-P~~i~~l---~~~L~~L~l~~~n~~~~~~~~L~~l~L~~  141 (323)
                      +|++++|.+. .++.    .++.+++|++|++++|.++.+ |..++.+   + +|+.|+++ +|.       ++.+  |.
T Consensus       201 ~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~-~L~~L~Ls-~N~-------l~~l--p~  268 (310)
T 4glp_A          201 NLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS-ALNSLNLS-FAG-------LEQV--PK  268 (310)
T ss_dssp             SCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT-TCCCEECC-SSC-------CCSC--CS
T ss_pred             EEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC-cCCEEECC-CCC-------CCch--hh
Confidence            7777777653 3333    245667777777777777654 6666555   4 77777777 776       5544  54


Q ss_pred             ccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          142 DGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       142 ~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      .+.  ++|++|++++| + .+|.  +..+  ++|+.+++..|
T Consensus       269 ~~~--~~L~~L~Ls~N~l~~~~~--~~~l--~~L~~L~L~~N  304 (310)
T 4glp_A          269 GLP--AKLRVLDLSSNRLNRAPQ--PDEL--PEVDNLTLDGN  304 (310)
T ss_dssp             CCC--SCCSCEECCSCCCCSCCC--TTSC--CCCSCEECSST
T ss_pred             hhc--CCCCEEECCCCcCCCCch--hhhC--CCccEEECcCC
Confidence            443  67777777777 6 6552  2333  44555554444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=2.9e-14  Score=138.94  Aligned_cols=163  Identities=17%  Similarity=0.112  Sum_probs=117.8

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC--------------------CcCCcchhhhcCccccccccc
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE--------------------FSSAGNIEEICGCKRLKSLPS   60 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~--------------------~~~~l~l~~L~~~~~l~~lP~   60 (323)
                      +|+|++|.+.+..|  ++.+++|++|+|++|... .+|.                    .+..+...++++|..-+..|.
T Consensus        62 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  138 (487)
T 3oja_A           62 LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDL  138 (487)
T ss_dssp             EEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB
T ss_pred             EEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCch
Confidence            37888888655444  778888888888887433 2221                    111222233445443334466


Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccC-CCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELG-NLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL  139 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~-~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L  139 (323)
                      .++++++|++|++++|.+.+..|..+. .+++|++|++++|.++.+|... .++ +|+.|+++ +|.       ++.+  
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~-~L~~L~Ls-~N~-------l~~~--  206 (487)
T 3oja_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFA-KLKTLDLS-SNK-------LAFM--  206 (487)
T ss_dssp             CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCT-TCCEEECC-SSC-------CCEE--
T ss_pred             hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCC-CCCEEECC-CCC-------CCCC--
Confidence            788999999999999999888888776 7899999999999998776543 577 99999999 888       7766  


Q ss_pred             ccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          140 SIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      +..+..+++|+.|++++| + .+|+ .+..+  ++|+.+++..|
T Consensus       207 ~~~~~~l~~L~~L~Ls~N~l~~lp~-~l~~l--~~L~~L~l~~N  247 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNNKLVLIEK-ALRFS--QNLEHFDLRGN  247 (487)
T ss_dssp             CGGGGGGTTCSEEECTTSCCCEECT-TCCCC--TTCCEEECTTC
T ss_pred             CHhHcCCCCccEEEecCCcCcccch-hhccC--CCCCEEEcCCC
Confidence            667889999999999999 8 8883 34444  55666665555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.45  E-value=4.7e-13  Score=115.12  Aligned_cols=144  Identities=20%  Similarity=0.189  Sum_probs=107.6

Q ss_pred             CEEeeeCCCCCccCCCC-cCCcchhhhcCcccccccccc-ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc
Q 039239           24 KKLNLSGCSKLKRLPEF-SSAGNIEEICGCKRLKSLPSS-ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA  101 (323)
Q Consensus        24 ~~L~Ls~c~~l~~~p~~-~~~l~l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~  101 (323)
                      +.++.+++ .+..+|.. ...+...+++++ .+..+|.. +.++++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        10 ~~v~c~~~-~l~~~p~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQ-GRTSVPTGIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSS-CCSSCCSCCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCC-CccCCCCCCCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            45666663 44555543 233444455554 45666664 6899999999999998776666668999999999999999


Q ss_pred             cccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhh
Q 039239          102 TTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQL  178 (323)
Q Consensus       102 i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l  178 (323)
                      ++.+|.. +..++ +|+.|+++ +|.       ++.+. +..+..+++|++|++++| + .+|+..+..+  .+|+.+++
T Consensus        88 l~~~~~~~~~~l~-~L~~L~L~-~N~-------l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l  155 (208)
T 2o6s_A           88 LQSLPNGVFDKLT-QLKELALN-TNQ-------LQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL--TSLQYIWL  155 (208)
T ss_dssp             CCCCCTTTTTTCT-TCCEEECC-SSC-------CCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEEC
T ss_pred             CCccCHhHhcCcc-CCCEEEcC-CCc-------CcccC-HhHhccCCcCCEEECCCCccceeCHHHhccC--CCccEEEe
Confidence            9888764 67888 99999999 887       66552 234788999999999999 8 8886555555  66777776


Q ss_pred             hhh
Q 039239          179 MAA  181 (323)
Q Consensus       179 ~~n  181 (323)
                      ..|
T Consensus       156 ~~N  158 (208)
T 2o6s_A          156 HDN  158 (208)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            666

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.45  E-value=1.8e-13  Score=135.13  Aligned_cols=145  Identities=18%  Similarity=0.119  Sum_probs=119.0

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCc--cCCCCcCCcc---hhhhcCcccccccccc-ccCCCCCCEEEee
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLK--RLPEFSSAGN---IEEICGCKRLKSLPSS-ICKLKSLKVLNLD   74 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~--~~p~~~~~l~---l~~L~~~~~l~~lP~~-i~~L~~L~~L~Ls   74 (323)
                      +|++++|++.+.+|..++++++|++|++++|...+  .+|..+..+.   ..++++|.-.+.+|.. +..+++|++|+++
T Consensus       357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~  436 (562)
T 3a79_B          357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS  436 (562)
T ss_dssp             EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred             EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence            37899999888899999999999999999976554  3334444333   3445665544448875 7789999999999


Q ss_pred             CCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccc-cccCCCCCeec
Q 039239           75 GCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSID-GLHMTDLRHFD  153 (323)
Q Consensus        75 ~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~-l~~l~~L~~L~  153 (323)
                      +|.+.+.+|..+.  ++|++|++++|.++.+|..++.++ +|+.|+++ +|.       ++.+  |.. +..+++|+.|+
T Consensus       437 ~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          437 SNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQ-ALQELNVA-SNQ-------LKSV--PDGVFDRLTSLQYIW  503 (562)
T ss_dssp             SSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSC-CCSEEECC-SSC-------CCCC--CTTSTTTCTTCCCEE
T ss_pred             CCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCC-CCCEEECC-CCC-------CCCC--CHHHHhcCCCCCEEE
Confidence            9999888877654  789999999999999999999999 99999999 898       7765  655 88999999999


Q ss_pred             CCCC-c
Q 039239          154 LSGN-F  158 (323)
Q Consensus       154 Ls~N-l  158 (323)
                      +++| +
T Consensus       504 l~~N~~  509 (562)
T 3a79_B          504 LHDNPW  509 (562)
T ss_dssp             CCSCCB
T ss_pred             ecCCCc
Confidence            9999 6

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.45  E-value=3.6e-14  Score=130.36  Aligned_cols=167  Identities=15%  Similarity=0.098  Sum_probs=84.8

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      +|+|++|++.+.. + +..+++|++|++++|... .+|.. ..+...++++ +.+..++..  .+++|++|++++|.+.+
T Consensus        62 ~L~Ls~n~l~~~~-~-~~~l~~L~~L~Ls~n~l~-~l~~~-~~L~~L~l~~-n~l~~~~~~--~~~~L~~L~l~~N~l~~  134 (317)
T 3o53_A           62 LLNLSSNVLYETL-D-LESLSTLRTLDLNNNYVQ-ELLVG-PSIETLHAAN-NNISRVSCS--RGQGKKNIYLANNKITM  134 (317)
T ss_dssp             EEECTTSCCEEEE-E-ETTCTTCCEEECCSSEEE-EEEEC-TTCCEEECCS-SCCSEEEEC--CCSSCEEEECCSSCCCS
T ss_pred             EEECCCCcCCcch-h-hhhcCCCCEEECcCCccc-cccCC-CCcCEEECCC-CccCCcCcc--ccCCCCEEECCCCCCCC
Confidence            3788998865544 3 888999999999997543 33321 1222222233 223333322  24455555555555444


Q ss_pred             CCCcccCCCcccceeeccccccccC-ChhH-HhcccccceeEccCCCCCCCCCCC---------------cceecCcccc
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEV-PSSV-VRLNNKLYELSSDRSRRGDKQMGL---------------LLPITLSIDG  143 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i-~~l~~~L~~L~l~~~n~~~~~~~~---------------L~~l~L~~~l  143 (323)
                      ..|..++.+++|++|++++|.++.+ |..+ ..++ +|+.|+++ +|........               ++.+  +..+
T Consensus       135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~-~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~  210 (317)
T 3o53_A          135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQ-YNFIYDVKGQVVFAKLKTLDLSSNKLAFM--GPEF  210 (317)
T ss_dssp             GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECT-TSCCCEEECCCCCTTCCEEECCSSCCCEE--CGGG
T ss_pred             ccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECC-CCcCcccccccccccCCEEECCCCcCCcc--hhhh
Confidence            4444455555555555555555433 2223 2344 55555555 4441100000               3333  3456


Q ss_pred             ccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          144 LHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       144 ~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      ..+++|++|++++| + .+|. .+..+  ++|+.+++..|
T Consensus       211 ~~l~~L~~L~L~~N~l~~l~~-~~~~l--~~L~~L~l~~N  247 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLVLIEK-ALRFS--QNLEHFDLRGN  247 (317)
T ss_dssp             GGGTTCSEEECTTSCCCEECT-TCCCC--TTCCEEECTTC
T ss_pred             cccCcccEEECcCCcccchhh-HhhcC--CCCCEEEccCC
Confidence            66777777777777 6 6662 23333  45555555444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=142.03  Aligned_cols=147  Identities=17%  Similarity=0.120  Sum_probs=120.9

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~   77 (323)
                      .|.++++ +..+|.   -.++|++|+|++|...+..|..+..+.   .+++++|.....+ |..++++++|++|+|++|.
T Consensus         9 ~dcs~~~-L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            9 AFYRFCN-LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEESCCC-SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             EEccCCC-CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            3455555 778887   368999999999887777676665554   4566787777888 6789999999999999999


Q ss_pred             CCCCCCcccCCCcccceeecccccccc-CChh--HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTE-VPSS--VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDL  154 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~--i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~L  154 (323)
                      +.+..|..|+++++|++|++++|.+.. +|..  +..++ +|++|+++ +|.       +..+..+..++++++|++|++
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-~L~~L~Ls-~N~-------l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-ALTRLDLS-KNQ-------IRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-SCCEEEEE-SCC-------CCCCCCCGGGGTCSSCCEEEE
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC-CCCEEECC-CCc-------ccccccchhHhhCCCCCEEEC
Confidence            998889999999999999999999964 5665  88999 99999999 888       666655567899999999999


Q ss_pred             CCC-c-ccC
Q 039239          155 SGN-F-KLD  161 (323)
Q Consensus       155 s~N-l-~lP  161 (323)
                      ++| + .+.
T Consensus       156 s~N~i~~~~  164 (844)
T 3j0a_A          156 SSNQIFLVC  164 (844)
T ss_dssp             ESSCCCCCC
T ss_pred             CCCcCCeeC
Confidence            999 7 544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.44  E-value=3.2e-14  Score=140.01  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccc--cCChhHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT  138 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~  138 (323)
                      .+.++++|++|++++|.+.+..|..++.+++|++|++++|.+.  .+|..+..++ +|+.|+++ +|.       ++.+.
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l~-~n~-------l~~~~  486 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLS-QCQ-------LEQLS  486 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECT-TSC-------CCEEC
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEECC-CCc-------cccCC
Confidence            3555566666666666655555556666666666666666653  3565666666 66666666 555       44331


Q ss_pred             CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          139 LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       139 L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       |..+.++++|++|++++| + .+|+..+..+  ++|+.+++..|
T Consensus       487 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~N  528 (570)
T 2z63_A          487 -PTAFNSLSSLQVLNMASNQLKSVPDGIFDRL--TSLQKIWLHTN  528 (570)
T ss_dssp             -TTTTTTCTTCCEEECCSSCCSCCCTTTTTTC--TTCCEEECCSS
T ss_pred             -hhhhhcccCCCEEeCCCCcCCCCCHHHhhcc--cCCcEEEecCC
Confidence             345666677777777777 6 6655445444  55555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.44  E-value=9.9e-14  Score=127.09  Aligned_cols=163  Identities=18%  Similarity=0.128  Sum_probs=114.2

Q ss_pred             CEEecCCCCCCcCCcccCCC-----CCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccc--ccccc--cCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNL-----ESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKS--LPSSI--CKLKSL   68 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L-----~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~--lP~~i--~~L~~L   68 (323)
                      +|+|++|++.+. |..++.+     ++|++|+|++|...+..|..++.+.   ..++++|...+.  +|..+  +++++|
T Consensus       125 ~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  203 (312)
T 1wwl_A          125 ILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL  203 (312)
T ss_dssp             EEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred             EEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence            378889886655 7767666     8999999999877666666665544   334556554443  45555  788899


Q ss_pred             CEEEeeCCCCCC--CCC-cccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCCCCCCCCCcceecCcccc
Q 039239           69 KVLNLDGCSNIQ--KLP-HELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG  143 (323)
Q Consensus        69 ~~L~Ls~n~~~~--~lp-~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l  143 (323)
                      ++|++++|.+.+  .++ ..+..+++|++|++++|.++..+  ..+..++ +|+.|+++ +|.       ++.+  |..+
T Consensus       204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~Ls-~N~-------l~~i--p~~~  272 (312)
T 1wwl_A          204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS-QLNSLNLS-FTG-------LKQV--PKGL  272 (312)
T ss_dssp             CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT-TCCEEECT-TSC-------CSSC--CSSC
T ss_pred             CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC-CCCEEECC-CCc-------cChh--hhhc
Confidence            999999987662  223 23457788999999999986643  3455567 89999998 887       6644  6555


Q ss_pred             ccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          144 LHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       144 ~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      .  ++|++|++++| + .+|.  +..+  ++|+.+++..|
T Consensus       273 ~--~~L~~L~Ls~N~l~~~p~--~~~l--~~L~~L~L~~N  306 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRNPS--PDEL--PQVGNLSLKGN  306 (312)
T ss_dssp             C--SEEEEEECCSSCCCSCCC--TTTS--CEEEEEECTTC
T ss_pred             c--CCceEEECCCCCCCCChh--HhhC--CCCCEEeccCC
Confidence            5  78899999999 8 7762  5544  66666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=4.5e-13  Score=111.32  Aligned_cols=122  Identities=16%  Similarity=0.130  Sum_probs=96.9

Q ss_pred             hhhhcCccccc--cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccccccc-CChhHHhcccccceeEcc
Q 039239           46 IEEICGCKRLK--SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTE-VPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        46 l~~L~~~~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~-lP~~i~~l~~~L~~L~l~  122 (323)
                      ..++++|. +.  .+|..+..+++|++|++++|.+.+.  ..++.+++|++|++++|.+.. +|..+..++ +|+.|+++
T Consensus        28 ~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls  103 (168)
T 2ell_A           28 ELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHLNLS  103 (168)
T ss_dssp             EEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEEECB
T ss_pred             EEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEEecc
Confidence            34456654 54  8999899999999999999986655  789999999999999999977 788888899 99999999


Q ss_pred             CCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc---cccccccchhhhhhhhhhh
Q 039239          123 RSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR---KEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       123 ~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~---~~L~~L~~~sL~~l~l~~n  181 (323)
                       +|.       ++.+.....+..+++|++|++++| + .+|+   ..+..+  ++|+.+++..|
T Consensus       104 -~N~-------l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l--~~L~~L~l~~n  157 (168)
T 2ell_A          104 -GNK-------LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL--PQLTYLDGYDR  157 (168)
T ss_dssp             -SSS-------CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC--SSCCEETTEET
T ss_pred             -CCc-------cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC--ccCcEecCCCC
Confidence             888       666632367889999999999999 8 7774   344444  56666654443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=2.1e-13  Score=111.07  Aligned_cols=103  Identities=25%  Similarity=0.367  Sum_probs=58.6

Q ss_pred             CCCCEEEeeCCCCC-CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccc
Q 039239           66 KSLKVLNLDGCSNI-QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGL  144 (323)
Q Consensus        66 ~~L~~L~Ls~n~~~-~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~  144 (323)
                      ++|+.|++++|.+. +.+|..++.+++|++|++++|.++.+ ..+..++ +|+.|+++ +|.       +... +|..++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~-~L~~L~Ls-~n~-------i~~~-~~~~~~   85 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLN-KLKKLELS-DNR-------VSGG-LEVLAE   85 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCT-TCCEEECC-SSC-------CCSC-THHHHH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCC-CCCEEECC-CCc-------ccch-HHHHhh
Confidence            55666666666655 46666666666666666666666555 5555666 66666666 555       3332 244445


Q ss_pred             cCCCCCeecCCCC-c-ccC-ccccccccchhhhhhhhhhh
Q 039239          145 HMTDLRHFDLSGN-F-KLD-RKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       145 ~l~~L~~L~Ls~N-l-~lP-~~~L~~L~~~sL~~l~l~~n  181 (323)
                      .+++|++|++++| + .+| +..+..+  ++|+.+++..|
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l--~~L~~L~l~~N  123 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKL--ENLKSLDLFNC  123 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGC--TTCCEEECTTC
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhC--CCCCEEeCcCC
Confidence            5666666666666 5 443 1233333  44444444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.42  E-value=1.8e-13  Score=137.91  Aligned_cols=151  Identities=17%  Similarity=0.169  Sum_probs=86.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccc-cccCCCCCCEEEeeCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPS-SICKLKSLKVLNLDGCS   77 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~   77 (323)
                      |+|++|.+.+..+..++++++|++|+|++|...+..|..++.+.   ..++++| .+..+|+ .++++++|++|++++|.
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc
Confidence            56666664444444466666666666666655554454433322   2233333 4555555 36666666666666666


Q ss_pred             CCCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCcccc--ccCCCCCeecC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG--LHMTDLRHFDL  154 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l--~~l~~L~~L~L  154 (323)
                      +.+..|..++++++|++|++++|.+..+ |..+..++ +|++|+++ +|.       ++.+. +..+  ..+++|++|++
T Consensus       109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~-~n~-------l~~~~-~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A          109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-NLQELLLS-NNK-------IQALK-SEELDIFANSSLKKLEL  178 (680)
T ss_dssp             CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-TCCEEECC-SSC-------CCCBC-HHHHGGGTTCEESEEEC
T ss_pred             cCccChhHccccCCCCEEECCCCcccccCchhhcccc-cCCEEEcc-CCc-------ccccC-HHHhhccccccccEEEC
Confidence            6555555666666666666666666433 44555666 66666666 555       33331 1222  24577888888


Q ss_pred             CCC-c-ccCcc
Q 039239          155 SGN-F-KLDRK  163 (323)
Q Consensus       155 s~N-l-~lP~~  163 (323)
                      ++| + .+++.
T Consensus       179 ~~n~l~~~~~~  189 (680)
T 1ziw_A          179 SSNQIKEFSPG  189 (680)
T ss_dssp             TTCCCCCBCTT
T ss_pred             CCCcccccChh
Confidence            888 6 65543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.41  E-value=5.7e-13  Score=124.65  Aligned_cols=146  Identities=15%  Similarity=0.081  Sum_probs=111.6

Q ss_pred             CEEeeeCCCCCccCCCCcC-CcchhhhcCcccccccccc-cc-CCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc
Q 039239           24 KKLNLSGCSKLKRLPEFSS-AGNIEEICGCKRLKSLPSS-IC-KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI  100 (323)
Q Consensus        24 ~~L~Ls~c~~l~~~p~~~~-~l~l~~L~~~~~l~~lP~~-i~-~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n  100 (323)
                      +.+++++ ..+..+|..+. .+..++|+++ .+..++.. +. ++++|++|+|++|.+.+..|..|..+++|++|++++|
T Consensus        21 ~~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQSLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCS-SCCSSCCSSCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCC-CCcCccCccCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            6888888 45677886443 3445566664 57777665 44 8999999999999988877788999999999999999


Q ss_pred             ccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCcccccccc-chhhhhh
Q 039239          101 ATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIF-EDALQDI  176 (323)
Q Consensus       101 ~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~-~~sL~~l  176 (323)
                      .++.+|. .+..++ +|+.|+++ +|.       +..+. +..|..+++|++|+|++| + .+|+..+..+. ..+|+.+
T Consensus        99 ~l~~~~~~~~~~l~-~L~~L~L~-~N~-------i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           99 HLHTLDEFLFSDLQ-ALEVLLLY-NNH-------IVVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             CCCEECTTTTTTCT-TCCEEECC-SSC-------CCEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred             cCCcCCHHHhCCCc-CCCEEECC-CCc-------ccEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence            9988865 678888 99999999 888       66663 467899999999999999 8 88854432211 1555666


Q ss_pred             hhhhh
Q 039239          177 QLMAA  181 (323)
Q Consensus       177 ~l~~n  181 (323)
                      ++..|
T Consensus       169 ~L~~N  173 (361)
T 2xot_A          169 DLSSN  173 (361)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=1.2e-13  Score=140.85  Aligned_cols=110  Identities=23%  Similarity=0.236  Sum_probs=56.6

Q ss_pred             cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCC
Q 039239           12 SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGN   88 (323)
Q Consensus        12 ~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~   88 (323)
                      ..|..+..+++|+.|+|++|... .+|..+..+. ++  +|++ +.+..+|..|++|++|++|+|++|.+. .+|..++.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34556677777777877775433 4544332222 22  2233 234455555555555666666555544 55555555


Q ss_pred             CcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           89 LEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        89 l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +++|++|+|++|.|+.+|..++.++ +|+.|+++ +|.
T Consensus       292 l~~L~~L~L~~N~l~~lp~~~~~l~-~L~~L~L~-~N~  327 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVTTLPWEFGNLC-NLQFLGVE-GNP  327 (727)
T ss_dssp             GTTCSEEECCSSCCCCCCSSTTSCT-TCCCEECT-TSC
T ss_pred             CCCCCEEECCCCCCCccChhhhcCC-CccEEeCC-CCc
Confidence            5556666666555555555555555 55566555 554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.41  E-value=4.8e-13  Score=132.64  Aligned_cols=119  Identities=18%  Similarity=0.248  Sum_probs=97.6

Q ss_pred             CCCccCCCCc-CCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-h
Q 039239           32 SKLKRLPEFS-SAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-S  108 (323)
Q Consensus        32 ~~l~~~p~~~-~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~  108 (323)
                      ..+.++|..+ ..++.++|++ +.++.+|+ +|.++++|++|+|++|.+.+..|..|+++++|++|++++|+++.+|. .
T Consensus        41 ~~l~~vP~~lp~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           41 LNFYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             SCCSSCCSSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             CCcCccCCCCCcCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            3566888654 3455566666 56888875 69999999999999998877777789999999999999999999875 5


Q ss_pred             HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239          109 VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       109 i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      +..++ +|++|+++ +|.       ++.+. +..|+++++|++|++++| + .++
T Consensus       120 f~~L~-~L~~L~Ls-~N~-------l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~  164 (635)
T 4g8a_A          120 FSGLS-SLQKLVAV-ETN-------LASLE-NFPIGHLKTLKELNVAHNLIQSFK  164 (635)
T ss_dssp             GTTCT-TCCEEECT-TSC-------CCCST-TCCCTTCTTCCEEECCSSCCCCCC
T ss_pred             hcCCC-CCCEEECC-CCc-------CCCCC-hhhhhcCcccCeeccccCccccCC
Confidence            78899 99999999 888       66662 246899999999999999 7 554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.40  E-value=5.5e-13  Score=133.25  Aligned_cols=156  Identities=26%  Similarity=0.357  Sum_probs=105.5

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |++++|. +..+|. +..+++|+.|+|++|...+ +|.+.....++  +|++| .+..+| .+..+++|+.|+|++|.+.
T Consensus        48 L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~  122 (605)
T 1m9s_A           48 IIANNSD-IKSVQG-IQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGIS  122 (605)
T ss_dssp             CBCTTCC-CCCCTT-GGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCC
T ss_pred             EECcCCC-CCCChH-HccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCC
Confidence            6777776 455664 7788999999998876544 34322222233  33443 455555 5788888888888888765


Q ss_pred             CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                      + + +.+..+++|+.|++++|.+..+ ..+..++ +|+.|+++ +|.       +..+  +. +..+++|+.|+|++| +
T Consensus       123 ~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~-~L~~L~Ls-~N~-------l~~~--~~-l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          123 D-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLT-KLDTLSLE-DNQ-------ISDI--VP-LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             C-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCT-TCSEEECC-SSC-------CCCC--GG-GTTCTTCCEEECCSSCC
T ss_pred             C-C-ccccCCCccCEEECCCCccCCc-hhhcccC-CCCEEECc-CCc-------CCCc--hh-hccCCCCCEEECcCCCC
Confidence            5 3 4577888888888888888777 5677888 88888888 777       5544  22 677788888888888 7


Q ss_pred             -ccCccccccccchhhhhhhhhhh
Q 039239          159 -KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       159 -~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                       .+|  .+..+  .+|+.|++..|
T Consensus       188 ~~l~--~l~~l--~~L~~L~L~~N  207 (605)
T 1m9s_A          188 SDLR--ALAGL--KNLDVLELFSQ  207 (605)
T ss_dssp             CBCG--GGTTC--TTCSEEECCSE
T ss_pred             CCCh--HHccC--CCCCEEEccCC
Confidence             664  34444  55555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.40  E-value=5.8e-13  Score=122.21  Aligned_cols=161  Identities=14%  Similarity=0.067  Sum_probs=115.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccc-cccc-cCCCCCCEEEeeCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSL-PSSI-CKLKSLKVLNLDGC   76 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~l-P~~i-~~L~~L~~L~Ls~n   76 (323)
                      |++++|++.+ ++.  ..+++|++|++++|...+..|..++.+.   ..++++| .+..+ |..+ ..+++|++|++++|
T Consensus       104 L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          104 LHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             EECCSSCCSE-EEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             EECCCCccCC-cCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence            5666766443 332  2367788888888776665554444333   3345554 44444 4555 47899999999998


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      .+.+. | ....+++|++|++++|.++.+|..+..++ +|+.|+++ +|.       ++.+  |..+..+++|+.|++++
T Consensus       180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~L~-~N~-------l~~l--~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAA-GVTWISLR-NNK-------LVLI--EKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             CCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGT-TCSEEECT-TSC-------CCEE--CTTCCCCTTCCEEECTT
T ss_pred             cCccc-c-cccccccCCEEECCCCcCCcchhhhcccC-cccEEECc-CCc-------ccch--hhHhhcCCCCCEEEccC
Confidence            86654 3 34468999999999999999998899999 99999999 888       7766  77889999999999999


Q ss_pred             C-c--ccCccccccccchhhhhhhhhhh
Q 039239          157 N-F--KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       157 N-l--~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      | +  ...+..+..+  +.|+.+++..+
T Consensus       247 N~~~~~~~~~~~~~~--~~L~~l~l~~~  272 (317)
T 3o53_A          247 NGFHCGTLRDFFSKN--QRVQTVAKQTV  272 (317)
T ss_dssp             CCCBHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred             CCccCcCHHHHHhcc--ccceEEECCCc
Confidence            9 6  2333444444  66777766544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.39  E-value=1.7e-12  Score=128.77  Aligned_cols=131  Identities=26%  Similarity=0.335  Sum_probs=88.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      |++++|.+ +.+|..+.  ++|++|+|++|... .+|.....+...++++| .++.+|. +.+  +|++|++++|.+.+ 
T Consensus        64 L~Ls~n~L-~~lp~~l~--~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~-  134 (571)
T 3cvr_A           64 LQLNRLNL-SSLPDNLP--PQITVLEITQNALI-SLPELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTM-  134 (571)
T ss_dssp             EECCSSCC-SCCCSCCC--TTCSEEECCSSCCS-CCCCCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSC-
T ss_pred             EEeCCCCC-CccCHhHc--CCCCEEECcCCCCc-ccccccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCC-
Confidence            77888874 44777663  77888888886544 67744444444455554 5566777 654  78888888876655 


Q ss_pred             CCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-c
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-K  159 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~  159 (323)
                      +|.   .+++|++|++++|.++.+|.   .++ +|+.|+++ +|.       ++.+  |. +.  ++|+.|+|++| + .
T Consensus       135 lp~---~l~~L~~L~Ls~N~l~~lp~---~l~-~L~~L~Ls-~N~-------L~~l--p~-l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          135 LPE---LPALLEYINADNNQLTMLPE---LPT-SLEVLSVR-NNQ-------LTFL--PE-LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCC---CCTTCCEEECCSSCCSCCCC---CCT-TCCEEECC-SSC-------CSCC--CC-CC--TTCCEEECCSSCCSS
T ss_pred             CCC---cCccccEEeCCCCccCcCCC---cCC-CcCEEECC-CCC-------CCCc--ch-hh--CCCCEEECcCCCCCc
Confidence            665   56778888888888877776   455 77888887 776       5554  44 44  67777777777 6 6


Q ss_pred             cC
Q 039239          160 LD  161 (323)
Q Consensus       160 lP  161 (323)
                      +|
T Consensus       195 lp  196 (571)
T 3cvr_A          195 LP  196 (571)
T ss_dssp             CC
T ss_pred             hh
Confidence            66

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.39  E-value=2.5e-13  Score=133.23  Aligned_cols=152  Identities=19%  Similarity=0.186  Sum_probs=111.4

Q ss_pred             EecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCcccccccc-ccccCCCCCCEEEeeCCCC
Q 039239            3 DLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLP-SSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         3 ~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~~   78 (323)
                      |.+++. +..+|..+.  ++|++|+|++|...+..|..+..+.   ..++++| .+..++ ..++++++|++|++++|.+
T Consensus        11 ~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           11 DGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             ECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc
Confidence            445554 678898664  8999999999887766666555544   3345555 455554 6789999999999999988


Q ss_pred             CCCCCcccCCCcccceeecccccccc--CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTE--VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~--lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      .+..|..++++++|++|++++|.++.  +|..+..++ +|+.|+++ +|..      +..+. +..++++++|++|++++
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~-~n~~------~~~~~-~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLRIG-NVET------FSEIR-RIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-TCCEEEEE-ESSS------CCEEC-TTTTTTCCEEEEEEEEE
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-CccEEECC-CCcc------ccccC-HhhhhcccccCeeeccC
Confidence            87777779999999999999999974  567888998 99999999 7652      23331 24677788888888888


Q ss_pred             C-c-ccCcccccc
Q 039239          157 N-F-KLDRKEVRG  167 (323)
Q Consensus       157 N-l-~lP~~~L~~  167 (323)
                      | + .+.+..+..
T Consensus       158 n~l~~~~~~~l~~  170 (549)
T 2z81_A          158 LSLRNYQSQSLKS  170 (549)
T ss_dssp             TTCCEECTTTTTT
T ss_pred             CcccccChhhhhc
Confidence            8 6 433334433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.38  E-value=1.9e-12  Score=119.59  Aligned_cols=116  Identities=21%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |++++|. +..+|. +..+++|++|++++|. +..+|.+.....++  ++++| .+..+| .+.++++|++|++++|.+.
T Consensus        49 L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~  123 (347)
T 4fmz_A           49 LVVAGEK-VASIQG-IEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNIS  123 (347)
T ss_dssp             EECCSSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCC
T ss_pred             EEEeCCc-cccchh-hhhcCCccEEEccCCc-cccchhhhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCccc
Confidence            5566655 344554 5666677777776653 33344322111122  23333 344443 3556666666666665543


Q ss_pred             CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      + ++. +..+++|++|++++|.....+..+..++ +|+.|+++ +|.
T Consensus       124 ~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~-~L~~L~l~-~~~  166 (347)
T 4fmz_A          124 D-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMT-GLNYLTVT-ESK  166 (347)
T ss_dssp             C-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCT-TCCEEECC-SSC
T ss_pred             C-chh-hccCCceeEEECCCCCCcccccchhhCC-CCcEEEec-CCC
Confidence            3 222 5555666666666654322223355555 55555555 444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.37  E-value=1.5e-12  Score=120.41  Aligned_cols=158  Identities=20%  Similarity=0.303  Sum_probs=80.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhh--hcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |++++|. +..+|. +..+++|++|++++|.....++.+.....++.  +++| .+..++. +..+++|++|++++|.+.
T Consensus       115 L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          115 LYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             EECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCC
T ss_pred             EECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCccc
Confidence            6777777 344555 67788888888888776666655322222222  2232 2333333 455555555555555433


Q ss_pred             CCCCc---------------------ccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239           80 QKLPH---------------------ELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT  138 (323)
Q Consensus        80 ~~lp~---------------------~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~  138 (323)
                      + ++.                     .+..+++|++|++++|.++.+|. +..++ +|+.|+++ +|.       +..+ 
T Consensus       191 ~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~-~L~~L~l~-~n~-------l~~~-  258 (347)
T 4fmz_A          191 D-ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLS-QLTWLEIG-TNQ-------ISDI-  258 (347)
T ss_dssp             C-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCCC-
T ss_pred             c-cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCC-CCCEEECC-CCc-------cCCC-
Confidence            2 221                     03344444444444444444433 44444 44444444 443       2322 


Q ss_pred             CccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          139 LSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       139 L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                        ..+..+++|++|++++| + .+|  .+..+  ++|+.+++..|
T Consensus       259 --~~~~~l~~L~~L~l~~n~l~~~~--~~~~l--~~L~~L~L~~n  297 (347)
T 4fmz_A          259 --NAVKDLTKLKMLNVGSNQISDIS--VLNNL--SQLNSLFLNNN  297 (347)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCCCG--GGGGC--TTCSEEECCSS
T ss_pred             --hhHhcCCCcCEEEccCCccCCCh--hhcCC--CCCCEEECcCC
Confidence              34566777777777777 6 554  22222  44555554444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.37  E-value=1.4e-12  Score=118.48  Aligned_cols=142  Identities=17%  Similarity=0.190  Sum_probs=112.6

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      +|++++|++. .++. +..+++|++|++++|.. ..+|.+.....++  ++++| .+..++ .+..+++|++|++++|.+
T Consensus        72 ~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A           72 KLFLNGNKLT-DIKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             EEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             EEEccCCccC-CCcc-cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcC
Confidence            3789999854 4555 88999999999999764 4455533222233  34443 566664 588999999999999987


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      .+.  ..++.+++|++|++++|.++.++. +..++ +|+.|+++ +|.       ++.+  + .+..+++|+.|++++| 
T Consensus       147 ~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~-~L~~L~L~-~N~-------i~~l--~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          147 TDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLT-KLQNLYLS-KNH-------ISDL--R-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCBC--G-GGTTCTTCSEEEEEEEE
T ss_pred             Ccc--hhhccCCCCCEEEccCCccccchh-hcCCC-ccCEEECC-CCc-------CCCC--h-hhccCCCCCEEECcCCc
Confidence            664  678999999999999999988876 88999 99999999 888       6665  3 4889999999999999 


Q ss_pred             c-ccCc
Q 039239          158 F-KLDR  162 (323)
Q Consensus       158 l-~lP~  162 (323)
                      + ..|.
T Consensus       212 i~~~~~  217 (291)
T 1h6t_A          212 CLNKPI  217 (291)
T ss_dssp             EECCCE
T ss_pred             ccCCcc
Confidence            7 6663

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.37  E-value=1.1e-12  Score=122.02  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=102.3

Q ss_pred             CEEecCCCCCCcCCc-ccCCCCCCCEEeeeCCCCCccCCC-CcCCcc-hhh--hcCcccccccc-ccccCCCCCCEEEee
Q 039239            1 MLDLSDCKSLKSLPA-EISNLESLKKLNLSGCSKLKRLPE-FSSAGN-IEE--ICGCKRLKSLP-SSICKLKSLKVLNLD   74 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~-~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~-l~~--L~~~~~l~~lP-~~i~~L~~L~~L~Ls   74 (323)
                      .|+|++|+ ++.+|. .|.++++|++|+|++|...+.+|. .+..+. +++  ..+++++..+| ..+.++++|++|+++
T Consensus        34 ~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~  112 (350)
T 4ay9_X           34 ELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  112 (350)
T ss_dssp             EEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred             EEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence            38999998 566764 588999999999999988888775 334433 332  23567788885 457889999999999


Q ss_pred             CCCCCCCCCcccCCCcc--------------------------cceeeccccccccCChhHHhcccccceeEccCCCCCC
Q 039239           75 GCSNIQKLPHELGNLEA--------------------------LNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGD  128 (323)
Q Consensus        75 ~n~~~~~lp~~l~~l~~--------------------------L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~  128 (323)
                      +|.+.+..+..+....+                          ++.|++++|.|+++|..++... +|+.+++.++|.  
T Consensus       113 ~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~-~L~~l~l~~~n~--  189 (350)
T 4ay9_X          113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDELNLSDNNN--  189 (350)
T ss_dssp             EECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE-EEEEEECTTCTT--
T ss_pred             ccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc-chhHHhhccCCc--
Confidence            98766544433333333                          4445555555555555544444 555555541232  


Q ss_pred             CCCCCcceecCc-cccccCCCCCeecCCCC-c-ccCcc
Q 039239          129 KQMGLLLPITLS-IDGLHMTDLRHFDLSGN-F-KLDRK  163 (323)
Q Consensus       129 ~~~~~L~~l~L~-~~l~~l~~L~~L~Ls~N-l-~lP~~  163 (323)
                           ++.+  | ..|+.+++|++||+++| + .+|+.
T Consensus       190 -----l~~i--~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          190 -----LEEL--PNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             -----CCCC--CTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             -----ccCC--CHHHhccCcccchhhcCCCCcCccChh
Confidence                 4444  3 35788999999999999 9 99853

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=1.3e-12  Score=129.42  Aligned_cols=148  Identities=20%  Similarity=0.209  Sum_probs=112.1

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      +|+|++|++ +.+|   +.+++|++|+|++|...+ +|.+...+...++++ +.++.+|.   .+++|++|++++|.+.+
T Consensus        84 ~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           84 VLEITQNAL-ISLP---ELPASLEYLDACDNRLST-LPELPASLKHLDVDN-NQLTMLPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             EEECCSSCC-SCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred             EEECcCCCC-cccc---cccCCCCEEEccCCCCCC-cchhhcCCCEEECCC-CcCCCCCC---cCccccEEeCCCCccCc
Confidence            489999984 4788   458999999999986655 888333444445555 45777888   68999999999988765


Q ss_pred             CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCC-------Ceec
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDL-------RHFD  153 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L-------~~L~  153 (323)
                       +|.   .+++|++|++++|.++.+|. +.  + +|+.|+++ +|.       ++.+  |. +..  +|       +.|+
T Consensus       155 -lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~-~L~~L~Ls-~N~-------L~~l--p~-~~~--~L~~~~~~L~~L~  213 (571)
T 3cvr_A          155 -LPE---LPTSLEVLSVRNNQLTFLPE-LP--E-SLEALDVS-TNL-------LESL--PA-VPV--RNHHSEETEIFFR  213 (571)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSCCCC-CC--T-TCCEEECC-SSC-------CSSC--CC-CC----------CCEEEE
T ss_pred             -CCC---cCCCcCEEECCCCCCCCcch-hh--C-CCCEEECc-CCC-------CCch--hh-HHH--hhhcccccceEEe
Confidence             776   57899999999999998988 54  5 99999999 888       6654  54 443  66       9999


Q ss_pred             CCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          154 LSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       154 Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      |++| + .||. .+..+  ++|+.+++..|
T Consensus       214 Ls~N~l~~lp~-~l~~l--~~L~~L~L~~N  240 (571)
T 3cvr_A          214 CRENRITHIPE-NILSL--DPTCTIILEDN  240 (571)
T ss_dssp             CCSSCCCCCCG-GGGGS--CTTEEEECCSS
T ss_pred             cCCCcceecCH-HHhcC--CCCCEEEeeCC
Confidence            9999 8 8883 44444  67777777776

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.37  E-value=1e-12  Score=112.29  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=114.4

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcch--hhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI--EEICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      +|++++|. +..+| .+..+++|++|++++| ....++.+.....+  .++++|.--...|..++++++|++|++++|.+
T Consensus        48 ~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           48 YITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             EEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred             EEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence            37899988 45778 5888999999999998 45555533322223  34556554445788899999999999999998


Q ss_pred             CCCCCcccCCCcccceeeccccc-cccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIA-TTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~-i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .+..|..++.+++|++|++++|. ++.+| .+..++ +|+.|+++ +|.       ++.+  + .+..+++|++|++++|
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~-~L~~L~l~-~n~-------i~~~--~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLP-ELKSLNIQ-FDG-------VHDY--R-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCS-SCCEEECT-TBC-------CCCC--T-TGGGCSSCCEEEECBC
T ss_pred             CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCC-CCCEEECC-CCC-------CcCh--H-HhccCCCCCEEEeeCc
Confidence            88888899999999999999998 88887 688999 99999999 888       6665  3 6788999999999999


Q ss_pred             -c
Q 039239          158 -F  158 (323)
Q Consensus       158 -l  158 (323)
                       +
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence             5

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.37  E-value=1.9e-12  Score=115.90  Aligned_cols=153  Identities=18%  Similarity=0.246  Sum_probs=86.9

Q ss_pred             ecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239            4 LSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         4 Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      ++++. +..++ .+..+++|++|++++|. +..+|.+.....++  ++++ +.+..+|+ +.++++|++|++++|.+.+ 
T Consensus        26 l~~~~-i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~N~l~~-   99 (263)
T 1xeu_A           26 LGKQS-VTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLKN-   99 (263)
T ss_dssp             HTCSC-TTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSSCCSC-
T ss_pred             hcCCC-ccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCCCccCC-
Confidence            44444 23333 25556666666666653 34444322111122  2333 34556665 7777777777777766544 


Q ss_pred             CCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-c
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-K  159 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~  159 (323)
                      +|.. .. ++|++|++++|.++.+| .+..++ +|+.|+++ +|.       ++.+  + .++.+++|++|++++| + .
T Consensus       100 l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~-~L~~L~Ls-~N~-------i~~~--~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          100 LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLK-NLEILSIR-NNK-------LKSI--V-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCT-TCCEEECT-TSC-------CCBC--G-GGGGCTTCCEEECTTSCCCB
T ss_pred             cCcc-cc-CcccEEEccCCccCCCh-hhcCcc-cccEEECC-CCc-------CCCC--h-HHccCCCCCEEECCCCcCcc
Confidence            4432 22 67777777777777664 466777 77777777 666       5554  2 4667777777777777 6 5


Q ss_pred             cCccccccccchhhhhhhhhhh
Q 039239          160 LDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       160 lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      ++  .+..+  .+|+.+++..|
T Consensus       165 ~~--~l~~l--~~L~~L~l~~N  182 (263)
T 1xeu_A          165 TG--GLTRL--KKVNWIDLTGQ  182 (263)
T ss_dssp             CT--TSTTC--CCCCEEEEEEE
T ss_pred             hH--HhccC--CCCCEEeCCCC
Confidence            42  33333  44555554444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.37  E-value=2.8e-12  Score=123.75  Aligned_cols=114  Identities=24%  Similarity=0.288  Sum_probs=83.7

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      +|++++|++. .+|. ++++++|++|++++|... .+|.....++..++++| .+..+| .++++++|++|++++|.+.+
T Consensus       135 ~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          135 YLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             EEECcCCCCC-CCcc-cCCCCCCCEEECCCCcCc-ccCCCcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCc
Confidence            3778888754 4784 888999999999987544 57776665555566664 566677 58888888888888887654


Q ss_pred             CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                       +|...   .+|++|++++|.++.+|. ++.++ +|+.|+++ +|.
T Consensus       210 -l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~-~L~~L~l~-~N~  248 (454)
T 1jl5_A          210 -LPDLP---LSLESIVAGNNILEELPE-LQNLP-FLTTIYAD-NNL  248 (454)
T ss_dssp             -CCCCC---TTCCEEECCSSCCSSCCC-CTTCT-TCCEEECC-SSC
T ss_pred             -CCCCc---CcccEEECcCCcCCcccc-cCCCC-CCCEEECC-CCc
Confidence             55432   478888888888887874 77777 88888888 676

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=6.3e-13  Score=119.09  Aligned_cols=139  Identities=21%  Similarity=0.190  Sum_probs=110.2

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      +|++++|. ++.+| .++.+++|++|+|++|.. ..+|. +..+. ++.  +++ +.++.+|....  ++|++|++++|.
T Consensus        45 ~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~~-N~l~~l~~~~~--~~L~~L~L~~N~  117 (263)
T 1xeu_A           45 NFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVNR-NRLKNLNGIPS--ACLSRLFLDNNE  117 (263)
T ss_dssp             EEECTTSC-CCCCT-TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECCS-SCCSCCTTCCC--SSCCEEECCSSC
T ss_pred             EEECcCCC-cccch-HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECCC-CccCCcCcccc--CcccEEEccCCc
Confidence            37899997 56778 588899999999999754 44554 33333 443  444 46777776443  899999999997


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +.+ ++ .++.+++|++|++++|.++.+| .+..++ +|+.|+++ +|.       ++.+   ..+..+++|+.|++++|
T Consensus       118 l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~-~L~~L~L~-~N~-------i~~~---~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          118 LRD-TD-SLIHLKNLEILSIRNNKLKSIV-MLGFLS-KLEVLDLH-GNE-------ITNT---GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CSB-SG-GGTTCTTCCEEECTTSCCCBCG-GGGGCT-TCCEEECT-TSC-------CCBC---TTSTTCCCCCEEEEEEE
T ss_pred             cCC-Ch-hhcCcccccEEECCCCcCCCCh-HHccCC-CCCEEECC-CCc-------Ccch---HHhccCCCCCEEeCCCC
Confidence            765 44 6899999999999999999886 688999 99999999 888       6665   56788999999999999


Q ss_pred             -c-ccC
Q 039239          158 -F-KLD  161 (323)
Q Consensus       158 -l-~lP  161 (323)
                       + ..|
T Consensus       183 ~~~~~~  188 (263)
T 1xeu_A          183 KCVNEP  188 (263)
T ss_dssp             EEECCC
T ss_pred             cccCCc
Confidence             7 666

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.36  E-value=3.3e-12  Score=123.38  Aligned_cols=147  Identities=25%  Similarity=0.204  Sum_probs=81.2

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccccccccCCCCCCEEEeeCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      +|++++|++.+ +|  ++++++|++|++++|...+ +|  ++.+. ++.  +++ +.++.++  ++++++|++|++++|.
T Consensus        89 ~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A           89 YLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTT-SCCSCCC--CTTCTTCCEEECTTCS
T ss_pred             EEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCC-Cccceec--cccCCcCCEEECCCCC
Confidence            37788887444 44  7778888888888875444 44  22222 222  233 3344443  5566666666666665


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCC--CC--cceecCc------cccccCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQM--GL--LLPITLS------IDGLHMT  147 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~--~~--L~~l~L~------~~l~~l~  147 (323)
                      ..+.+  .++.+++|++|++++|.++.+|  +..++ +|+.|+++ +|......  .+  ++.+++.      ..++.++
T Consensus       160 ~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~-~L~~L~l~-~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~l~  233 (457)
T 3bz5_A          160 KITKL--DVTPQTQLTTLDCSFNKITELD--VSQNK-LLNRLNCD-TNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLT  233 (457)
T ss_dssp             CCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCT-TCCEEECC-SSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred             ccccc--ccccCCcCCEEECCCCccceec--cccCC-CCCEEECc-CCcCCeeccccCCCCCEEECcCCcccccCccccC
Confidence            55555  2556666666666666665555  45555 56666665 44411100  00  2222221      0156677


Q ss_pred             CCCeecCCCC-c-ccCc
Q 039239          148 DLRHFDLSGN-F-KLDR  162 (323)
Q Consensus       148 ~L~~L~Ls~N-l-~lP~  162 (323)
                      +|+.|++++| + .+|.
T Consensus       234 ~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          234 QLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             TCSEEECCSSCCSCCCC
T ss_pred             CCCEEEeeCCcCCCcCH
Confidence            7777777777 6 6654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.36  E-value=3.7e-12  Score=122.99  Aligned_cols=140  Identities=21%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             CCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc
Q 039239           21 ESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI  100 (323)
Q Consensus        21 ~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n  100 (323)
                      ++|++|++++|. +..+|.....++..++++| .++.+| +++++++|++|++++|.+.+ +|..+   .+|++|++++|
T Consensus       111 ~~L~~L~l~~n~-l~~l~~~~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n  183 (454)
T 1jl5_A          111 QSLKSLLVDNNN-LKALSDLPPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNN  183 (454)
T ss_dssp             TTCCEEECCSSC-CSCCCSCCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSS
T ss_pred             CCCcEEECCCCc-cCcccCCCCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCC
Confidence            455555555542 2223333223333334443 455677 47788888888888876554 56543   46777777777


Q ss_pred             ccccCChhHHhcccccceeEccCCCCCCCCCCC---cceecCc-------cccccCCCCCeecCCCC-c-ccCc--cccc
Q 039239          101 ATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL---LLPITLS-------IDGLHMTDLRHFDLSGN-F-KLDR--KEVR  166 (323)
Q Consensus       101 ~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~---L~~l~L~-------~~l~~l~~L~~L~Ls~N-l-~lP~--~~L~  166 (323)
                      .++.+| .++.++ +|+.|+++ +|.....+..   ++.+++.       +.++.+++|++|++++| + .+|.  ++|+
T Consensus       184 ~l~~l~-~~~~l~-~L~~L~l~-~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~  260 (454)
T 1jl5_A          184 QLEELP-ELQNLP-FLTAIYAD-NNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLE  260 (454)
T ss_dssp             CCSSCC-CCTTCT-TCCEEECC-SSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCC
T ss_pred             cCCcCc-cccCCC-CCCEEECC-CCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccC
Confidence            777776 467777 77777777 6653221111   3333332       14677888888888888 7 6662  3444


Q ss_pred             cccc
Q 039239          167 GIFE  170 (323)
Q Consensus       167 ~L~~  170 (323)
                      .|++
T Consensus       261 ~L~l  264 (454)
T 1jl5_A          261 ALNV  264 (454)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            4443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.35  E-value=4e-12  Score=127.30  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=19.9

Q ss_pred             cCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          145 HMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       145 ~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      .+++|+.|++++| + .|| ..+..+  ++|+.+++..|
T Consensus       259 ~~~~L~~L~Ls~N~L~~lp-~~l~~l--~~L~~L~L~~N  294 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLTRLP-ESLIHL--SSETTVNLEGN  294 (622)
T ss_dssp             CCTTCCEEECCSSCCCSCC-GGGGGS--CTTCEEECCSC
T ss_pred             ccccCcEEeCCCCCCCcCC-HHHhhc--cccCEEEecCC
Confidence            3455666666666 5 565 334444  56666666666

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.35  E-value=1.1e-12  Score=110.06  Aligned_cols=127  Identities=11%  Similarity=0.123  Sum_probs=89.0

Q ss_pred             cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCC-CCCEEEeeCCCCCCCCCcccCCCccccee
Q 039239           17 ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLK-SLKVLNLDGCSNIQKLPHELGNLEALNSL   95 (323)
Q Consensus        17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~-~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L   95 (323)
                      +.++.+|+.|++++|..                      ..+|. +..+. +|++|++++|.+.+.  ..++.+++|++|
T Consensus        15 ~~~~~~L~~L~l~~n~l----------------------~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L   69 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKI----------------------PVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL   69 (176)
T ss_dssp             EECTTSCEEEECTTSCC----------------------CSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEE
T ss_pred             cCCcCCceEEEeeCCCC----------------------chhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEE
Confidence            55689999999999642                      22322 33344 788888888876654  577888888888


Q ss_pred             eccccccccCChhH-HhcccccceeEccCCCCCCCCCCCcceecCcc--ccccCCCCCeecCCCC-c-ccCcc---cccc
Q 039239           96 YAKGIATTEVPSSV-VRLNNKLYELSSDRSRRGDKQMGLLLPITLSI--DGLHMTDLRHFDLSGN-F-KLDRK---EVRG  167 (323)
Q Consensus        96 ~L~~n~i~~lP~~i-~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~--~l~~l~~L~~L~Ls~N-l-~lP~~---~L~~  167 (323)
                      ++++|.++.+|..+ ..++ +|+.|+++ +|.       +..+  +.  .+..+++|++|++++| + .+|..   .+..
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~-~L~~L~L~-~N~-------i~~~--~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  138 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALP-DLTELILT-NNS-------LVEL--GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK  138 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCT-TCCEEECC-SCC-------CCCG--GGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH
T ss_pred             ECCCCcccccCcchhhcCC-CCCEEECC-CCc-------CCcc--hhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH
Confidence            88888888777554 7788 88888888 777       5554  43  6778888888888888 7 77632   1333


Q ss_pred             ccchhhhhhhhhhh
Q 039239          168 IFEDALQDIQLMAA  181 (323)
Q Consensus       168 L~~~sL~~l~l~~n  181 (323)
                      +  ++|+.+++..|
T Consensus       139 l--~~L~~Ld~~~n  150 (176)
T 1a9n_A          139 V--PQVRVLDFQKV  150 (176)
T ss_dssp             C--TTCSEETTEEC
T ss_pred             C--CccceeCCCcC
Confidence            3  55666655554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.34  E-value=2.9e-12  Score=128.29  Aligned_cols=105  Identities=26%  Similarity=0.325  Sum_probs=58.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      |++++|. ++.+|..+.  ++|++|+|++|. +..+|.....++.+++++| .++.+|.   .+++|++|++++|.+.+ 
T Consensus        45 L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~-  115 (622)
T 3g06_A           45 LNVGESG-LTTLPDCLP--AHITTLVIPDNN-LTSLPALPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTH-  115 (622)
T ss_dssp             EECCSSC-CSCCCSCCC--TTCSEEEECSCC-CSCCCCCCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCC-
T ss_pred             EEecCCC-cCccChhhC--CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCC-
Confidence            5677766 446776554  677777777764 4456664444444455554 3556665   45666666666665433 


Q ss_pred             CCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~  122 (323)
                      +|.   .+++|+.|++++|.++.+|..+   + +|+.|+++
T Consensus       116 l~~---~l~~L~~L~L~~N~l~~lp~~l---~-~L~~L~Ls  149 (622)
T 3g06_A          116 LPA---LPSGLCKLWIFGNQLTSLPVLP---P-GLQELSVS  149 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSCCCCCC---T-TCCEEECC
T ss_pred             CCC---CCCCcCEEECCCCCCCcCCCCC---C-CCCEEECc
Confidence            333   3444555555555555554422   3 45555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.34  E-value=4.2e-12  Score=122.64  Aligned_cols=145  Identities=17%  Similarity=0.112  Sum_probs=102.5

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hh--hhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IE--EICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      +|++++|++.+ +|  ++.+++|++|++++|...+ +|  ++.+. ++  ++++| .++.+|  ++++++|++|++++|.
T Consensus        68 ~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~  138 (457)
T 3bz5_A           68 KLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT  138 (457)
T ss_dssp             EEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC
T ss_pred             EEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc
Confidence            48999998544 55  8899999999999987555 44  33332 33  44554 566676  8899999999999998


Q ss_pred             CCCCCCcccCCCcccceeeccccc-cccCChhHHhcccccceeEccCCCCCCCCC--CC--cceecCc------cccccC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIA-TTEVPSSVVRLNNKLYELSSDRSRRGDKQM--GL--LLPITLS------IDGLHM  146 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~-i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~--~~--L~~l~L~------~~l~~l  146 (323)
                      +.+ ++  ++.+++|++|++++|. ++.+  .+..++ +|+.|+++ +|.....+  ..  ++.+++.      ..++.+
T Consensus       139 l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls-~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l  211 (457)
T 3bz5_A          139 LTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQT-QLTTLDCS-FNKITELDVSQNKLLNRLNCDTNNITKLDLNQN  211 (457)
T ss_dssp             CSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCT-TCCEEECC-SSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTC
T ss_pred             cce-ec--cccCCcCCEEECCCCCccccc--ccccCC-cCCEEECC-CCccceeccccCCCCCEEECcCCcCCeeccccC
Confidence            776 43  8899999999999994 5776  367888 99999999 88722111  00  3333332      124566


Q ss_pred             CCCCeecCCCC-c-ccC
Q 039239          147 TDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       147 ~~L~~L~Ls~N-l-~lP  161 (323)
                      ++|++|++++| + .+|
T Consensus       212 ~~L~~L~Ls~N~l~~ip  228 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTEID  228 (457)
T ss_dssp             TTCSEEECCSSCCSCCC
T ss_pred             CCCCEEECcCCcccccC
Confidence            66777777777 6 655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=8.7e-12  Score=104.45  Aligned_cols=121  Identities=26%  Similarity=0.285  Sum_probs=95.0

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      +++++++ +..+|..+  .++|++|++++|.                      ++.+|. .+.++++|++|++++|.+.+
T Consensus        12 l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~   66 (177)
T 2o6r_A           12 IRCNSKG-LTSVPTGI--PSSATRLELESNK----------------------LQSLPHGVFDKLTQLTKLSLSQNQIQS   66 (177)
T ss_dssp             EECCSSC-CSSCCTTC--CTTCSEEECCSSC----------------------CCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             EEecCCC-CccCCCCC--CCCCcEEEeCCCc----------------------ccEeCHHHhcCcccccEEECCCCcceE
Confidence            5666666 56677644  4788999998853                      333443 35788999999999998776


Q ss_pred             CCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCcc-ccccCCCCCeecCCCC-
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSI-DGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~-~l~~l~~L~~L~Ls~N-  157 (323)
                      ..+..++.+++|++|++++|.++.+|.. +..++ +|+.|+++ +|.       ++.+  +. .+..+++|++|++++| 
T Consensus        67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~-------l~~~--~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT-QLKELALD-TNQ-------LKSV--PDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CSCC--CTTTTTTCTTCCEEECCSSC
T ss_pred             eChhHccCCCccCEEECCCCCccccCHHHhhCCc-ccCEEECc-CCc-------ceEe--CHHHhcCCcccCEEEecCCC
Confidence            6666689999999999999999888764 67888 99999999 887       6655  44 4578999999999999 


Q ss_pred             c
Q 039239          158 F  158 (323)
Q Consensus       158 l  158 (323)
                      +
T Consensus       136 ~  136 (177)
T 2o6r_A          136 W  136 (177)
T ss_dssp             B
T ss_pred             e
Confidence            6

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.34  E-value=7.2e-14  Score=128.56  Aligned_cols=91  Identities=20%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             ccccccCCCCCCEEEeeCC-CCCCC-CCcccCCCc-ccceeeccccc--c--ccCChhHHhcccccceeEccCCCCCCCC
Q 039239           58 LPSSICKLKSLKVLNLDGC-SNIQK-LPHELGNLE-ALNSLYAKGIA--T--TEVPSSVVRLNNKLYELSSDRSRRGDKQ  130 (323)
Q Consensus        58 lP~~i~~L~~L~~L~Ls~n-~~~~~-lp~~l~~l~-~L~~L~L~~n~--i--~~lP~~i~~l~~~L~~L~l~~~n~~~~~  130 (323)
                      +|..+.++++|++|++++| .+.+. ++..+..++ +|++|++++|.  +  ..+|..+..++ +|+.|+++ +|..   
T Consensus       160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~-~~~~---  234 (336)
T 2ast_B          160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLS-DSVM---  234 (336)
T ss_dssp             HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECT-TCTT---
T ss_pred             HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCC-CCCc---
Confidence            4444445555555555555 33322 344445555 55555555553  2  23455555555 55555555 4441   


Q ss_pred             CCCcceecCccccccCCCCCeecCCCC
Q 039239          131 MGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       131 ~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                         ++. ..+..+.++++|++|++++|
T Consensus       235 ---l~~-~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          235 ---LKN-DCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             ---CCG-GGGGGGGGCTTCCEEECTTC
T ss_pred             ---CCH-HHHHHHhCCCCCCEeeCCCC
Confidence               111 11234556666666666666

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=3.3e-12  Score=126.73  Aligned_cols=95  Identities=26%  Similarity=0.243  Sum_probs=63.0

Q ss_pred             cccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCc
Q 039239           55 LKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLL  134 (323)
Q Consensus        55 l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L  134 (323)
                      ++.+|. ++++++|+.|+|++|.+. .+|..++.+++|++|++++|.|+.+| .++.++ +|+.|+++ +|.       +
T Consensus       453 l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~-~L~~L~Ls-~N~-------l  520 (567)
T 1dce_A          453 LTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLP-RLQELLLC-NNR-------L  520 (567)
T ss_dssp             CSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS-SCCEEECC-SSC-------C
T ss_pred             CCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC-CCcEEECC-CCC-------C
Confidence            334554 666677777777776554 66777777777777777777776666 666776 77777777 666       5


Q ss_pred             ceecCccccccCCCCCeecCCCC-c-ccC
Q 039239          135 LPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       135 ~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      +.+..|..++.+++|+.|+|++| + .+|
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            54433556667777777777777 6 555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.33  E-value=3.7e-12  Score=122.91  Aligned_cols=115  Identities=20%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcch--hhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNI--EEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l--~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |++++|.+.+..|  ++.+++|+.|++++|... .++.+.....+  .++++| .+..+++ +..+++|++|++++|.+.
T Consensus       204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          204 LIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCC
T ss_pred             EEecCCccccccc--ccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCCccC
Confidence            6777777544333  566777888888776533 33332211112  233333 3344443 666677777777776655


Q ss_pred             CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +..+  +..+++|++|++++|.++.++. +..++ +|+.|+++ +|.
T Consensus       279 ~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~-~L~~L~L~-~n~  320 (466)
T 1o6v_A          279 NISP--LAGLTALTNLELNENQLEDISP-ISNLK-NLTYLTLY-FNN  320 (466)
T ss_dssp             CCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCT-TCSEEECC-SSC
T ss_pred             cccc--ccCCCccCeEEcCCCcccCchh-hcCCC-CCCEEECc-CCc
Confidence            4332  6666677777777776665544 55666 67777776 555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.32  E-value=6.4e-12  Score=125.51  Aligned_cols=142  Identities=17%  Similarity=0.191  Sum_probs=112.6

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      .|+|++|.+.+ +|. +..+++|+.|+|++|.. ..+|.+.....++.  |++ +.+..+| .+..+++|+.|+|++|.+
T Consensus        69 ~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~-N~l~~l~-~l~~l~~L~~L~Ls~N~l  143 (605)
T 1m9s_A           69 KLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEH-NGISDIN-GLVHLPQLESLYLGNNKI  143 (605)
T ss_dssp             EEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTT-SCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             EEEeeCCCCCC-Chh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecC-CCCCCCc-cccCCCccCEEECCCCcc
Confidence            38999998544 555 88899999999999754 44664333222443  444 3466664 588999999999999987


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      .+.  ..++.+++|+.|+|++|.+..++. +..++ +|+.|+++ +|.       +..+   ..+..+++|+.|+|++| 
T Consensus       144 ~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~-~L~~L~Ls-~N~-------i~~l---~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          144 TDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLT-KLQNLYLS-KNH-------ISDL---RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCBC---GGGTTCTTCSEEECCSEE
T ss_pred             CCc--hhhcccCCCCEEECcCCcCCCchh-hccCC-CCCEEECc-CCC-------CCCC---hHHccCCCCCEEEccCCc
Confidence            765  678999999999999999988766 88999 99999999 888       6665   46889999999999999 


Q ss_pred             c-ccCc
Q 039239          158 F-KLDR  162 (323)
Q Consensus       158 l-~lP~  162 (323)
                      + ..|.
T Consensus       209 l~~~p~  214 (605)
T 1m9s_A          209 CLNKPI  214 (605)
T ss_dssp             EECCCC
T ss_pred             CcCCcc
Confidence            7 6663

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.30  E-value=4.9e-12  Score=107.77  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=93.8

Q ss_pred             cccccccccccCCCCCCEEEeeCCCCCCCCCc-ccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCC
Q 039239           53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPH-ELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQ  130 (323)
Q Consensus        53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~-~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~  130 (323)
                      +.++++|..+..  +|++|++++|.+.+..+. .++.+++|++|++++|.++.+ |..+..++ +|+.|+++ +|.    
T Consensus        18 ~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~----   89 (192)
T 1w8a_A           18 RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLG-ENK----   89 (192)
T ss_dssp             SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECC-SCC----
T ss_pred             CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECC-CCc----
Confidence            345667766543  899999999987666554 489999999999999999876 78899999 99999999 888    


Q ss_pred             CCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          131 MGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       131 ~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                         ++.+. +..+..+++|++|+|++| + .+++..+..+  .+|+.+++..|
T Consensus        90 ---l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N  136 (192)
T 1w8a_A           90 ---IKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--NSLTSLNLASN  136 (192)
T ss_dssp             ---CCEEC-SSSSTTCTTCCEEECCSSCCCEECTTSSTTC--TTCCEEECTTC
T ss_pred             ---CCccC-HHHhcCCCCCCEEECCCCcCCeeCHHHhhcC--CCCCEEEeCCC
Confidence               77763 355889999999999999 8 7776666666  77788877776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.29  E-value=4e-12  Score=106.60  Aligned_cols=86  Identities=15%  Similarity=0.047  Sum_probs=54.1

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh--hHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS--SVVRLNNKLYELSSDRSRRGDKQMGLLLPIT  138 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~--~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~  138 (323)
                      .+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+|.  .+..++ +|+.|+++ +|.       +..+ 
T Consensus        59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~-~L~~L~l~-~N~-------i~~~-  128 (176)
T 1a9n_A           59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK-SLTYLCIL-RNP-------VTNK-  128 (176)
T ss_dssp             CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCT-TCCEEECC-SSG-------GGGS-
T ss_pred             ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCC-CCCEEEec-CCC-------CCCc-
Confidence            45566677777777766554322333666777777777777766665  666666 67777777 665       4433 


Q ss_pred             Cccc----cccCCCCCeecCCCC
Q 039239          139 LSID----GLHMTDLRHFDLSGN  157 (323)
Q Consensus       139 L~~~----l~~l~~L~~L~Ls~N  157 (323)
                       +..    +..+++|+.||+++|
T Consensus       129 -~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          129 -KHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             -TTHHHHHHHHCTTCSEETTEEC
T ss_pred             -HhHHHHHHHHCCccceeCCCcC
Confidence             432    566677777777666

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=2.2e-14  Score=122.84  Aligned_cols=109  Identities=18%  Similarity=0.228  Sum_probs=75.9

Q ss_pred             ccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCccccee
Q 039239           16 EISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSL   95 (323)
Q Consensus        16 ~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L   95 (323)
                      .++.+++|++|++++|                      .+..+| .+.++++|++|++++|.+. .+|..+..+++|++|
T Consensus        43 ~~~~l~~L~~L~ls~n----------------------~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN----------------------NIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL   98 (198)
T ss_dssp             HHHHTTTCSEEECSEE----------------------EESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred             HHhcCCCCCEEECCCC----------------------CCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence            5666667777777663                      344455 5667778888888887654 667766677778888


Q ss_pred             eccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239           96 YAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus        96 ~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                      ++++|.++.+| .+..++ +|+.|+++ +|.       ++.+.-...+..+++|++|++++| +
T Consensus        99 ~L~~N~l~~l~-~~~~l~-~L~~L~l~-~N~-------i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           99 WISYNQIASLS-GIEKLV-NLRVLYMS-NNK-------ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEECCCHH-HHHHHH-HSSEEEES-EEE-------CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECcCCcCCcCC-ccccCC-CCCEEECC-CCc-------CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            88888887776 577777 78888887 666       554421135677788888888888 6

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.28  E-value=6.5e-12  Score=124.58  Aligned_cols=143  Identities=16%  Similarity=0.162  Sum_probs=90.8

Q ss_pred             CCCcCCcccCCCCCCCEEe-eeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccC
Q 039239            9 SLKSLPAEISNLESLKKLN-LSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELG   87 (323)
Q Consensus         9 ~l~~lP~~i~~L~~L~~L~-Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~   87 (323)
                      ..+.+|..++.+++|+.|+ ++.+ ....++       -..+. .+.+..+|.     ..|+.|++++|.+.+ +|. ++
T Consensus       397 ~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L~-------~l~l~-~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~  460 (567)
T 1dce_A          397 PLLYEKETLQYFSTLKAVDPMRAA-YLDDLR-------SKFLL-ENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LE  460 (567)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHH-HHHHHH-------HHHHH-HHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GG
T ss_pred             cccCCHHHHHHHHhcccCcchhhc-ccchhh-------hhhhh-cccccccCc-----cCceEEEecCCCCCC-CcC-cc
Confidence            3455666677777777777 4432 111110       00111 123344443     247778888876554 665 77


Q ss_pred             CCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC-ccc
Q 039239           88 NLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD-RKE  164 (323)
Q Consensus        88 ~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP-~~~  164 (323)
                      .+++|+.|++++|.++.+|..++.++ +|+.|+++ +|.       ++.+  | .++.+++|+.|+|++| + .++ |..
T Consensus       461 ~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~Ls-~N~-------l~~l--p-~l~~l~~L~~L~Ls~N~l~~~~~p~~  528 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLRALPPALAALR-CLEVLQAS-DNA-------LENV--D-GVANLPRLQELLLCNNRLQQSAAIQP  528 (567)
T ss_dssp             GGTTCCEEECCSSCCCCCCGGGGGCT-TCCEEECC-SSC-------CCCC--G-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred             ccccCcEeecCcccccccchhhhcCC-CCCEEECC-CCC-------CCCC--c-ccCCCCCCcEEECCCCCCCCCCCcHH
Confidence            78888888888888888888888887 88888888 777       6654  5 6777888888888888 7 664 455


Q ss_pred             cccccchhhhhhhhhhh
Q 039239          165 VRGIFEDALQDIQLMAA  181 (323)
Q Consensus       165 L~~L~~~sL~~l~l~~n  181 (323)
                      +..+  ++|+.+++..|
T Consensus       529 l~~l--~~L~~L~L~~N  543 (567)
T 1dce_A          529 LVSC--PRLVLLNLQGN  543 (567)
T ss_dssp             GGGC--TTCCEEECTTS
T ss_pred             HhcC--CCCCEEEecCC
Confidence            6555  66666666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=3.7e-12  Score=129.91  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=51.6

Q ss_pred             cccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCc
Q 039239           55 LKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLL  134 (323)
Q Consensus        55 l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L  134 (323)
                      +..+|..++++++|++|+|++|.+. .+|..|+++++|++|+|++|.|+.+|..++.++ +|+.|+++ +|.       +
T Consensus       236 l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~-~L~~L~L~-~N~-------l  305 (727)
T 4b8c_D          236 IFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF-QLKYFYFF-DNM-------V  305 (727)
T ss_dssp             CSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT-TCSEEECC-SSC-------C
T ss_pred             CCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC-CCCEEECC-CCC-------C
Confidence            4455555555555666666555444 555555555556666666655555555555555 56666655 554       4


Q ss_pred             ceecCccccccCCCCCeecCCCC
Q 039239          135 LPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       135 ~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      ..+  |..|+.+++|++|+|++|
T Consensus       306 ~~l--p~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          306 TTL--PWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CCC--CSSTTSCTTCCCEECTTS
T ss_pred             Ccc--ChhhhcCCCccEEeCCCC
Confidence            433  445555566666666666

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.27  E-value=1.4e-11  Score=118.89  Aligned_cols=137  Identities=21%  Similarity=0.263  Sum_probs=95.7

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCc--CCcchhhhcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFS--SAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~--~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      +|++++|. +..++. +..+++|++|++++|...+..| ..  ..++..++++| .++.++ .+..+++|++|++++|.+
T Consensus       181 ~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l  255 (466)
T 1o6v_A          181 RLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQI  255 (466)
T ss_dssp             EEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             EEECcCCc-CCCChh-hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCcc
Confidence            37888888 444554 7789999999999987665544 21  12223334443 455554 578889999999999887


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .+..|  +..+++|++|++++|.+..+|. +..++ +|+.|+++ +|.       ++.+  + .++.+++|++|++++|
T Consensus       256 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~-~L~~L~L~-~n~-------l~~~--~-~~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          256 SNLAP--LSGLTKLTELKLGANQISNISP-LAGLT-ALTNLELN-ENQ-------LEDI--S-PISNLKNLTYLTLYFN  319 (466)
T ss_dssp             CCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCT-TCSEEECC-SSC-------CSCC--G-GGGGCTTCSEEECCSS
T ss_pred             ccchh--hhcCCCCCEEECCCCccCcccc-ccCCC-ccCeEEcC-CCc-------ccCc--h-hhcCCCCCCEEECcCC
Confidence            76554  8889999999999999988776 77888 99999999 777       3333  1 1445555555555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.26  E-value=1.1e-11  Score=105.89  Aligned_cols=115  Identities=25%  Similarity=0.305  Sum_probs=95.5

Q ss_pred             cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCC
Q 039239           53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~  131 (323)
                      +.++++|..+.  ++|++|++++|.+. .+|..+..+++|++|++++|.|+.++ ..+..++ +|+.|+++ +|.     
T Consensus        20 ~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls-~N~-----   89 (193)
T 2wfh_A           20 KGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILS-YNR-----   89 (193)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-----
T ss_pred             CCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECC-CCc-----
Confidence            45667776653  68999999998765 78899999999999999999998876 5688999 99999999 888     


Q ss_pred             CCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhhh
Q 039239          132 GLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAAA  182 (323)
Q Consensus       132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n~  182 (323)
                        ++.+. +..|..+++|++|+|++| + .+|+..+..+  .+|+.+++..|+
T Consensus        90 --l~~i~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 --LRCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDL--SALSHLAIGANP  137 (193)
T ss_dssp             --CCBCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTC--TTCCEEECCSSC
T ss_pred             --cCEeC-HHHhCCCCCCCEEECCCCCCCeeChhhhhcC--ccccEEEeCCCC
Confidence              67662 356899999999999999 8 8987666666  778888777763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=4.3e-13  Score=123.36  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=32.4

Q ss_pred             ccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc-ccc--cCChhHHhcccccceeEccCCC
Q 039239           58 LPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI-ATT--EVPSSVVRLNNKLYELSSDRSR  125 (323)
Q Consensus        58 lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n-~i~--~lP~~i~~l~~~L~~L~l~~~n  125 (323)
                      +|..+.++++|++|++++|.+.+..|..++.+++|++|++++| .++  .+|..+..++ +|+.|+++ +|
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-~L~~L~l~-~~  178 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-RLDELNLS-WC  178 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-TCCEEECC-CC
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-CCCEEcCC-CC
Confidence            4444445555555555555444444444555555555555555 343  2444444554 55555555 44

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.22  E-value=3.6e-11  Score=100.94  Aligned_cols=96  Identities=24%  Similarity=0.268  Sum_probs=82.6

Q ss_pred             cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCC
Q 039239           53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~  131 (323)
                      +.++++|..+.  ++|++|+|++|.+.+..|..++.+++|++|++++|.|+.+|.. +..++ +|+.|+++ +|.     
T Consensus        22 n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~-~N~-----   92 (174)
T 2r9u_A           22 IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QLTQLDLN-DNH-----   92 (174)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-----
T ss_pred             CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hhhEEECC-CCc-----
Confidence            35667777664  8899999999998888899999999999999999999999876 47888 99999999 888     


Q ss_pred             CCcceecCcc-ccccCCCCCeecCCCC-c-ccC
Q 039239          132 GLLLPITLSI-DGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       132 ~~L~~l~L~~-~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                        ++.+  +. .+..+++|++|+|++| + ..+
T Consensus        93 --l~~l--~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 --LKSI--PRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             --CCCC--CTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             --ccee--CHHHhccccCCCEEEeCCCCccccc
Confidence              7766  54 4889999999999999 7 554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=5.3e-11  Score=99.42  Aligned_cols=94  Identities=26%  Similarity=0.267  Sum_probs=80.2

Q ss_pred             cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCC
Q 039239           53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~  131 (323)
                      +.++++|..+.  ++|++|+|++|.+.+..|..++.+++|++|++++|.|+.+|.. +..++ +|+.|+++ +|.     
T Consensus        19 n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~-~N~-----   89 (170)
T 3g39_A           19 KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLN-DNQ-----   89 (170)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-----
T ss_pred             CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECC-CCc-----
Confidence            35666776663  7899999999999888899999999999999999999988765 57888 99999999 888     


Q ss_pred             CCcceecCccccccCCCCCeecCCCC-c
Q 039239          132 GLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                        ++.+. +..+..+++|++|+|++| +
T Consensus        90 --l~~~~-~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           90 --LKSIP-RGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             --CCCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred             --cCEeC-HHHhcCCCCCCEEEeCCCCC
Confidence              77662 235889999999999999 7

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.18  E-value=7.6e-11  Score=98.93  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=77.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccc-cccccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-PSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      +++++|+ ++.+|..+.  ++|++|+|++|.                      +..+ |..+.++++|++|+|++|.+.+
T Consensus        17 l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~----------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~   71 (174)
T 2r9u_A           17 VNCQNIR-LASVPAGIP--TDKQRLWLNNNQ----------------------ITKLEPGVFDHLVNLQQLYFNSNKLTA   71 (174)
T ss_dssp             EECCSSC-CSSCCSCCC--TTCSEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEeCCCC-CCccCCCcC--CCCcEEEeCCCC----------------------ccccCHHHhcCCcCCCEEECCCCCCCc
Confidence            6777776 577887664  888899988854                      3333 4467788999999999987766


Q ss_pred             CCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCC
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~  126 (323)
                      ..+..++.+++|++|++++|.|+.+|.. +..++ +|+.|+++ +|.
T Consensus        72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~-~N~  116 (174)
T 2r9u_A           72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLK-SLTHIYLY-NNP  116 (174)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECC-SSC
T ss_pred             cChhHhCCcchhhEEECCCCccceeCHHHhcccc-CCCEEEeC-CCC
Confidence            5555578999999999999999888765 78888 99999999 887

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.17  E-value=1.1e-10  Score=97.45  Aligned_cols=98  Identities=21%  Similarity=0.235  Sum_probs=79.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccc-cccccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSL-PSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~l-P~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      +++++|+ ++.+|..+.  ++|++|+|++|.                      +..+ |..+.++++|++|+|++|.+.+
T Consensus        14 l~~s~n~-l~~ip~~~~--~~l~~L~L~~N~----------------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~   68 (170)
T 3g39_A           14 VDCSGKS-LASVPTGIP--TTTQVLYLYDNQ----------------------ITKLEPGVFDRLTQLTRLDLDNNQLTV   68 (170)
T ss_dssp             EECTTSC-CSSCCSCCC--TTCSEEECCSSC----------------------CCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             EEeCCCC-cCccCccCC--CCCcEEEcCCCc----------------------CCccChhhhcCcccCCEEECCCCCcCc
Confidence            6788877 666887663  888999998853                      3444 4457889999999999998876


Q ss_pred             CCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCC
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~  126 (323)
                      ..+..+..+++|++|++++|.|+.+|. .+..++ +|+.|+++ +|.
T Consensus        69 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~-~N~  113 (170)
T 3g39_A           69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK-SLTHIWLL-NNP  113 (170)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC
T ss_pred             cChhhccCCCCCCEEECCCCccCEeCHHHhcCCC-CCCEEEeC-CCC
Confidence            666678899999999999999988876 478888 99999999 887

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.15  E-value=1.5e-10  Score=96.77  Aligned_cols=102  Identities=25%  Similarity=0.247  Sum_probs=82.8

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccc-cccCCCCCCEEEeeCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS-SICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~   79 (323)
                      .|++++|++.+..+..++.+++|++|++++|.                      +..+|+ .+.++++|++|++++|.+.
T Consensus        32 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~~~~~~~~l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ----------------------IQSLPDGVFDKLTKLTILYLHENKLQ   89 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----------------------CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEeCCCcccEeCHHHhcCcccccEEECCCCc----------------------ceEeChhHccCCCccCEEECCCCCcc
Confidence            37899998665445557889999999999963                      333443 3578899999999999888


Q ss_pred             CCCCcccCCCcccceeeccccccccCChhH-HhcccccceeEccCCCC
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSSV-VRLNNKLYELSSDRSRR  126 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i-~~l~~~L~~L~l~~~n~  126 (323)
                      +..+..++.+++|++|++++|.++.+|..+ ..++ +|+.|+++ +|.
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~  135 (177)
T 2o6r_A           90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWLH-TNP  135 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECC-SSC
T ss_pred             ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc-ccCEEEec-CCC
Confidence            766667889999999999999999887764 6788 99999999 887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.14  E-value=3.8e-13  Score=115.08  Aligned_cols=135  Identities=17%  Similarity=0.210  Sum_probs=107.6

Q ss_pred             CCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeec
Q 039239           18 SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYA   97 (323)
Q Consensus        18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L   97 (323)
                      .....++.++++++...+.+|               .++.+|..+..+++|++|++++|.+.+ +| .+..+++|++|++
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~---------------~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l   77 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIP---------------PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSL   77 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCT---------------TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEE
T ss_pred             HhcccccCcchheeEeccccC---------------cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEEC
Confidence            345666777777766555544               467788889999999999999987665 77 8899999999999


Q ss_pred             cccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccCc-cccccccchhhh
Q 039239           98 KGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR-KEVRGIFEDALQ  174 (323)
Q Consensus        98 ~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~-~~L~~L~~~sL~  174 (323)
                      ++|.++.+|..+..++ +|+.|+++ +|.       ++.+  + .+..+++|++|++++| + .+|+ ..+..+  ++|+
T Consensus        78 ~~n~l~~l~~~~~~~~-~L~~L~L~-~N~-------l~~l--~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l--~~L~  143 (198)
T 1ds9_A           78 GRNLIKKIENLDAVAD-TLEELWIS-YNQ-------IASL--S-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL--DKLE  143 (198)
T ss_dssp             EEEEECSCSSHHHHHH-HCSEEEEE-EEE-------CCCH--H-HHHHHHHSSEEEESEEECCCHHHHHHHTTT--TTCS
T ss_pred             CCCCcccccchhhcCC-cCCEEECc-CCc-------CCcC--C-ccccCCCCCEEECCCCcCCchhHHHHHhcC--CCCC
Confidence            9999999999998888 99999999 887       6665  4 6888999999999999 8 7763 344444  6677


Q ss_pred             hhhhhhhhh
Q 039239          175 DIQLMAAAR  183 (323)
Q Consensus       175 ~l~l~~n~~  183 (323)
                      .+++..|+.
T Consensus       144 ~L~l~~N~l  152 (198)
T 1ds9_A          144 DLLLAGNPL  152 (198)
T ss_dssp             EEEECSCHH
T ss_pred             EEEecCCcc
Confidence            777766633

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.12  E-value=1.2e-12  Score=123.10  Aligned_cols=148  Identities=13%  Similarity=0.080  Sum_probs=88.5

Q ss_pred             EEecCCC---CCCcCCccc-------CCCCCCCEEeeeCCCCCc----cCCCCcCC---cchhhhcCcccc----ccccc
Q 039239            2 LDLSDCK---SLKSLPAEI-------SNLESLKKLNLSGCSKLK----RLPEFSSA---GNIEEICGCKRL----KSLPS   60 (323)
Q Consensus         2 L~Ls~n~---~l~~lP~~i-------~~L~~L~~L~Ls~c~~l~----~~p~~~~~---l~l~~L~~~~~l----~~lP~   60 (323)
                      |+|++|.   +.+.+|..+       ..+++|++|+|++|....    .+|..+..   ++..++++|..-    ..++.
T Consensus        65 L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  144 (386)
T 2ca6_A           65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR  144 (386)
T ss_dssp             EECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             EeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH
Confidence            6777763   233556554       678888888888877655    24433322   222334444321    12333


Q ss_pred             cccCC---------CCCCEEEeeCCCCC-CCCC---cccCCCcccceeeccccccc------cCChhHHhcccccceeEc
Q 039239           61 SICKL---------KSLKVLNLDGCSNI-QKLP---HELGNLEALNSLYAKGIATT------EVPSSVVRLNNKLYELSS  121 (323)
Q Consensus        61 ~i~~L---------~~L~~L~Ls~n~~~-~~lp---~~l~~l~~L~~L~L~~n~i~------~lP~~i~~l~~~L~~L~l  121 (323)
                      .+..+         ++|++|++++|.+. +.+|   ..+..+++|++|++++|.++      -+|..+..++ +|+.|++
T Consensus       145 ~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~L  223 (386)
T 2ca6_A          145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDL  223 (386)
T ss_dssp             HHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEEC
T ss_pred             HHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEEC
Confidence            34444         77888888887765 3444   35566777888888887775      2333666777 7888888


Q ss_pred             cCCCCCCCCCCCcce---ecCccccccCCCCCeecCCCC-c
Q 039239          122 DRSRRGDKQMGLLLP---ITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       122 ~~~n~~~~~~~~L~~---l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                      + +|.       +..   ..++..+..+++|++|+|++| +
T Consensus       224 s-~n~-------l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          224 Q-DNT-------FTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             C-SSC-------CHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             c-CCC-------CCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            7 666       421   112455666777777777777 5

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.06  E-value=3.9e-10  Score=104.27  Aligned_cols=101  Identities=20%  Similarity=0.141  Sum_probs=76.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCcccccccc-ccccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLP-SSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP-~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      ++.++++.+..+|. +..+++|++|+|+++                     +.++.+| ..|++|++|++|+|++|.+.+
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~---------------------n~l~~~~~~~~~~l~~L~~L~l~~N~l~~   70 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQ---------------------QHLQHLELRDLRGLGELRNLTIVKSGLRF   70 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSC---------------------SSCCEECGGGSCSCCCCSEEECCSSCCCE
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCC---------------------CCCCCcChhHhccccCCCEEECCCCccce
Confidence            45666524667888 888888888888862                     2344444 357788888889998888888


Q ss_pred             CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      ..|..|+++++|++|+|++|.|+.+|..+.... .|+.|++. +|.
T Consensus        71 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~L~~l~l~-~N~  114 (347)
T 2ifg_A           71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS-GNP  114 (347)
T ss_dssp             ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC-SSC
T ss_pred             eCHHHhcCCcCCCEEeCCCCccceeCHHHcccC-CceEEEee-CCC
Confidence            777788888888889998888888887666655 58888888 776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.06  E-value=8.1e-12  Score=117.46  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             ccCCCCCCEEEeeCCCCCC----CCCcccCCCcccceeecccccccc-----CChhHHhc---------ccccceeEccC
Q 039239           62 ICKLKSLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATTE-----VPSSVVRL---------NNKLYELSSDR  123 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~~-----lP~~i~~l---------~~~L~~L~l~~  123 (323)
                      +..+++|++|+|++|.+..    .+|..+..+++|++|++++|.++.     ++..+..+         + +|+.|+++ 
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~-  167 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICG-  167 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECC-
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECC-
Confidence            3567777777777776665    356666677777777777777642     23333333         5 77777777 


Q ss_pred             CCCCCCCCCCcceecCc---cccccCCCCCeecCCCC
Q 039239          124 SRRGDKQMGLLLPITLS---IDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       124 ~n~~~~~~~~L~~l~L~---~~l~~l~~L~~L~Ls~N  157 (323)
                      +|.       +....++   ..+..+++|++|++++|
T Consensus       168 ~n~-------l~~~~~~~l~~~l~~~~~L~~L~L~~n  197 (386)
T 2ca6_A          168 RNR-------LENGSMKEWAKTFQSHRLLHTVKMVQN  197 (386)
T ss_dssp             SSC-------CTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CCC-------CCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence            665       3322222   34455666666666666

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.04  E-value=3.1e-12  Score=119.53  Aligned_cols=171  Identities=18%  Similarity=0.112  Sum_probs=102.8

Q ss_pred             CEEecCCCCCCcCCcccCCC-----CCCCEEeeeCCCCCccCCCCc--------CCcchhhhcCccccccccc-----cc
Q 039239            1 MLDLSDCKSLKSLPAEISNL-----ESLKKLNLSGCSKLKRLPEFS--------SAGNIEEICGCKRLKSLPS-----SI   62 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L-----~~L~~L~Ls~c~~l~~~p~~~--------~~l~l~~L~~~~~l~~lP~-----~i   62 (323)
                      +|+|++|++.+..+..+..+     ++|++|+|++|...+..+..+        ..++..++++|. ++..+.     .+
T Consensus        55 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l  133 (362)
T 3goz_A           55 SLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAF  133 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHH
T ss_pred             EEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHH
Confidence            37889998666656666554     899999999987655444311        122333445544 444332     23


Q ss_pred             cC-CCCCCEEEeeCCCCCC----CCCcccCCCc-ccceeeccccccccC-ChhHHh----c-ccccceeEccCCCCCCCC
Q 039239           63 CK-LKSLKVLNLDGCSNIQ----KLPHELGNLE-ALNSLYAKGIATTEV-PSSVVR----L-NNKLYELSSDRSRRGDKQ  130 (323)
Q Consensus        63 ~~-L~~L~~L~Ls~n~~~~----~lp~~l~~l~-~L~~L~L~~n~i~~l-P~~i~~----l-~~~L~~L~l~~~n~~~~~  130 (323)
                      .. .++|++|++++|.+..    .++..+..+. +|++|++++|.++.. +..+..    . + +|+.|+++ +|.    
T Consensus       134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls-~N~----  207 (362)
T 3goz_A          134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA-SVTSLDLS-ANL----  207 (362)
T ss_dssp             TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT-TCCEEECT-TSC----
T ss_pred             HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCC-CCCEEECC-CCC----
Confidence            34 3689999999987764    3334445555 889999999988654 334433    3 5 88999998 777    


Q ss_pred             CCCcceec---Ccccccc-CCCCCeecCCCC-c-ccCccccccccc--hhhhhhhhhhh
Q 039239          131 MGLLLPIT---LSIDGLH-MTDLRHFDLSGN-F-KLDRKEVRGIFE--DALQDIQLMAA  181 (323)
Q Consensus       131 ~~~L~~l~---L~~~l~~-l~~L~~L~Ls~N-l-~lP~~~L~~L~~--~sL~~l~l~~n  181 (323)
                         +....   ++..+.. .++|++|+|++| + ..+...+..+-.  ++|+.+++..|
T Consensus       208 ---i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          208 ---LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             ---GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             ---CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence               44421   1344444 358888888888 7 655322221111  44555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.99  E-value=1.4e-09  Score=101.06  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=95.1

Q ss_pred             CcccCCCCCCCEEeeeCCCCCccCCCC--cCCcc--hhhhcCcccccccccc-ccCC-CCCCEEEeeCCCCCCCCCcccC
Q 039239           14 PAEISNLESLKKLNLSGCSKLKRLPEF--SSAGN--IEEICGCKRLKSLPSS-ICKL-KSLKVLNLDGCSNIQKLPHELG   87 (323)
Q Consensus        14 P~~i~~L~~L~~L~Ls~c~~l~~~p~~--~~~l~--l~~L~~~~~l~~lP~~-i~~L-~~L~~L~Ls~n~~~~~lp~~l~   87 (323)
                      |..+..+++|++|++++|.. ..+|+.  .....  ..++.++..+..+|.. +..+ ..++.|++++|.+. .+|....
T Consensus        97 ~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f  174 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF  174 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS
T ss_pred             chhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc
Confidence            34445555666666655433 223321  11111  2234466777777763 4555 46899999998754 5666666


Q ss_pred             CCcccceeeccc-cccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC--c-ccCc
Q 039239           88 NLEALNSLYAKG-IATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN--F-KLDR  162 (323)
Q Consensus        88 ~l~~L~~L~L~~-n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N--l-~lP~  162 (323)
                      ...+|++|++.+ |.++.+|. .+..++ +|+.|+++ +|.       ++.+  |.  +.+.+|+.|.+.++  + .+| 
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs-~N~-------l~~l--p~--~~~~~L~~L~~l~~~~l~~lP-  240 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDIS-RTR-------IHSL--PS--YGLENLKKLRARSTYNLKKLP-  240 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECT-TSC-------CCCC--CS--SSCTTCCEEECTTCTTCCCCC-
T ss_pred             cccchhHHhhccCCcccCCCHHHhccCc-ccchhhcC-CCC-------cCcc--Ch--hhhccchHhhhccCCCcCcCC-
Confidence            778899999975 77899986 567888 99999999 888       7776  43  23556666666666  6 787 


Q ss_pred             cccccccchhhhhhhhhhh
Q 039239          163 KEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       163 ~~L~~L~~~sL~~l~l~~n  181 (323)
                       .+..|  .+|+.+.+..+
T Consensus       241 -~l~~l--~~L~~l~l~~~  256 (350)
T 4ay9_X          241 -TLEKL--VALMEASLTYP  256 (350)
T ss_dssp             -CTTTC--CSCCEEECSCH
T ss_pred             -CchhC--cChhhCcCCCC
Confidence             34444  55555554433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=5.9e-11  Score=110.77  Aligned_cols=153  Identities=14%  Similarity=0.043  Sum_probs=92.5

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCC----CCcC----CcchhhhcCccccccccccccCC-----CC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLP----EFSS----AGNIEEICGCKRLKSLPSSICKL-----KS   67 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p----~~~~----~l~l~~L~~~~~l~~lP~~i~~L-----~~   67 (323)
                      ++++++|.+.+.+|..+...++|++|+|++|......+    +.+.    .++..++++|.--...+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            36788888888888877767779999999976444333    2222    22233445543222224444443     78


Q ss_pred             CCEEEeeCCCCCCCCCccc----CCC-cccceeeccccccccCCh-hHHhc----ccccceeEccCCCCCCCCCCCccee
Q 039239           68 LKVLNLDGCSNIQKLPHEL----GNL-EALNSLYAKGIATTEVPS-SVVRL----NNKLYELSSDRSRRGDKQMGLLLPI  137 (323)
Q Consensus        68 L~~L~Ls~n~~~~~lp~~l----~~l-~~L~~L~L~~n~i~~lP~-~i~~l----~~~L~~L~l~~~n~~~~~~~~L~~l  137 (323)
                      |++|++++|.+.+..+..+    ..+ ++|++|++++|.++..+. .+...    +.+|++|+++ +|.       +...
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~-------l~~~  153 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR-GND-------LGIK  153 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT-TSC-------GGGS
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc-CCc-------CCHH
Confidence            8888888887666555533    333 788888888888865543 33321    2278888888 776       3321


Q ss_pred             c---CccccccCC-CCCeecCCCC-c-ccC
Q 039239          138 T---LSIDGLHMT-DLRHFDLSGN-F-KLD  161 (323)
Q Consensus       138 ~---L~~~l~~l~-~L~~L~Ls~N-l-~lP  161 (323)
                      .   ++..+..++ +|++|++++| + ...
T Consensus       154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          154 SSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            1   122334444 7777777777 6 444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.93  E-value=1.2e-11  Score=118.40  Aligned_cols=148  Identities=18%  Similarity=0.092  Sum_probs=74.3

Q ss_pred             EEecCCCCCC----cCCcccCCCCCCCEEeeeCCCCCccCCCCc--------CCcchhhhcCccccc----cccccccCC
Q 039239            2 LDLSDCKSLK----SLPAEISNLESLKKLNLSGCSKLKRLPEFS--------SAGNIEEICGCKRLK----SLPSSICKL   65 (323)
Q Consensus         2 L~Ls~n~~l~----~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~--------~~l~l~~L~~~~~l~----~lP~~i~~L   65 (323)
                      |+|++|++..    .+|..+..+++|++|++++|......+..+        ..++..++++|.--.    .++..+..+
T Consensus        90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  169 (461)
T 1z7x_W           90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK  169 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC
Confidence            5666665442    345556666666666666655332211100        112222333332111    234455556


Q ss_pred             CCCCEEEeeCCCCCCCCCcccC-----CCcccceeecccccccc-----CChhHHhcccccceeEccCCCCCCCCCCCcc
Q 039239           66 KSLKVLNLDGCSNIQKLPHELG-----NLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRRGDKQMGLLL  135 (323)
Q Consensus        66 ~~L~~L~Ls~n~~~~~lp~~l~-----~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~  135 (323)
                      ++|++|++++|.+....+..+.     ..++|++|++++|.++.     ++..+..++ +|+.|+++ +|.       +.
T Consensus       170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls-~n~-------l~  240 (461)
T 1z7x_W          170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALG-SNK-------LG  240 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECC-SSB-------CH
T ss_pred             CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEecc-CCc-------CC
Confidence            6666777766654433222222     24466677777766653     455666666 67777776 554       22


Q ss_pred             eecC---cc-ccccCCCCCeecCCCC-c
Q 039239          136 PITL---SI-DGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       136 ~l~L---~~-~l~~l~~L~~L~Ls~N-l  158 (323)
                      ...+   .. .+..+++|++|++++| +
T Consensus       241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          241 DVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             hHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            2211   01 1124667777777777 5

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=2.9e-09  Score=98.40  Aligned_cols=92  Identities=21%  Similarity=0.157  Sum_probs=77.7

Q ss_pred             ccccccccccCCCCCCEEEeeC-CCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCC
Q 039239           54 RLKSLPSSICKLKSLKVLNLDG-CSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        54 ~l~~lP~~i~~L~~L~~L~Ls~-n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~  131 (323)
                      .+..+|. +..+++|++|+|++ |.+.+..|..|+.+++|++|+|++|.|..+| ..+..++ +|+.|+|+ +|.     
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~-~N~-----   91 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLS-FNA-----   91 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECC-SSC-----
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCC-CCc-----
Confidence            6788898 99999999999997 7766666678999999999999999998765 5778999 99999999 888     


Q ss_pred             CCcceecCccc-cccCCCCCeecCCCC-c
Q 039239          132 GLLLPITLSID-GLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       132 ~~L~~l~L~~~-l~~l~~L~~L~Ls~N-l  158 (323)
                        |+.+  |.. +..++ |+.|+|++| |
T Consensus        92 --l~~~--~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           92 --LESL--SWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             --CSCC--CSTTTCSCC-CCEEECCSSCC
T ss_pred             --ccee--CHHHcccCC-ceEEEeeCCCc
Confidence              7766  543 44444 999999999 6

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.77  E-value=1.2e-10  Score=111.50  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=15.5

Q ss_pred             Ccccceeecccccccc-----CChhHHhcccccceeEcc
Q 039239           89 LEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        89 l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~  122 (323)
                      +++|++|++++|.++.     ++..+..++ +|+.|+++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls  292 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKE-SLKELSLA  292 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCT-TCCEEECT
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCC-CcceEECC
Confidence            4444555555544432     344444444 45555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.51  E-value=1.6e-07  Score=86.10  Aligned_cols=90  Identities=11%  Similarity=0.062  Sum_probs=69.0

Q ss_pred             CCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccc-eeEccCCCCCCCCCCCcceecCccc
Q 039239           65 LKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLY-ELSSDRSRRGDKQMGLLLPITLSID  142 (323)
Q Consensus        65 L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~-~L~l~~~n~~~~~~~~L~~l~L~~~  142 (323)
                      +++|+.++|++|++...-+..|.++.+|+.+++.+| +..++. ++..+. +|+ .+.+. + .       ++.+. +.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L~~~l~l~-~-~-------l~~I~-~~a  292 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RLAGTLELP-A-S-------VTAIE-FGA  292 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEEC-T-T-------CCEEC-TTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh-hccEEEEEc-c-c-------ceEEc-hhh
Confidence            678999999987765554556888999999999887 777754 667777 898 89887 5 3       56663 367


Q ss_pred             cccCCCCCeecCCCC-c-ccCccccc
Q 039239          143 GLHMTDLRHFDLSGN-F-KLDRKEVR  166 (323)
Q Consensus       143 l~~l~~L~~L~Ls~N-l-~lP~~~L~  166 (323)
                      |.++++|+.+++++| + .|++..+.
T Consensus       293 F~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          293 FMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             TTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             hhCCccCCEEEeCCCccCccchhhhc
Confidence            889999999999888 7 88754433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.42  E-value=2.6e-08  Score=98.23  Aligned_cols=68  Identities=12%  Similarity=-0.074  Sum_probs=42.1

Q ss_pred             cccccccCCCCCCEEEeeCCCCC---CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           57 SLPSSICKLKSLKVLNLDGCSNI---QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        57 ~lP~~i~~L~~L~~L~Ls~n~~~---~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+|..+.++++|+.|+++.+...   ...+..+..+++|+.|+++++....+|..+..++ +|+.|+++ +|.
T Consensus       234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~Ls-~~~  304 (592)
T 3ogk_B          234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA-QIRKLDLL-YAL  304 (592)
T ss_dssp             GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG-GCCEEEET-TCC
T ss_pred             HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC-CCcEEecC-CCc
Confidence            34555555566666666543222   2333455666677777777765666777777777 88888887 665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.41  E-value=7.9e-09  Score=101.91  Aligned_cols=57  Identities=21%  Similarity=0.113  Sum_probs=29.1

Q ss_pred             CCCCCEEEeeCCCCC----CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEcc
Q 039239           65 LKSLKVLNLDGCSNI----QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        65 L~~L~~L~Ls~n~~~----~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~  122 (323)
                      +++|++|++++|.+.    +.++..+.++++|++|++++|.+..+|..+..++ +|+.|+++
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~-~L~~L~l~  251 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA-NLEEFCGG  251 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCT-TCCEEEEC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhh-HHHhhccc
Confidence            344444444444433    1222333445556666666665555555555665 66666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.41  E-value=5.4e-09  Score=98.23  Aligned_cols=146  Identities=15%  Similarity=0.084  Sum_probs=69.8

Q ss_pred             EEecCCCCCCcC----CcccC-CCCCCCEEeeeCCCCCccCCC-C---cCCcchhhhcCcccccc-----ccccc-cCCC
Q 039239            2 LDLSDCKSLKSL----PAEIS-NLESLKKLNLSGCSKLKRLPE-F---SSAGNIEEICGCKRLKS-----LPSSI-CKLK   66 (323)
Q Consensus         2 L~Ls~n~~l~~l----P~~i~-~L~~L~~L~Ls~c~~l~~~p~-~---~~~l~l~~L~~~~~l~~-----lP~~i-~~L~   66 (323)
                      |+|++|.+...-    ...+. ..++|++|+|++|.....-.. .   +..+...+|++| .++.     +...+ ...+
T Consensus        77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~  155 (372)
T 3un9_A           77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQC  155 (372)
T ss_dssp             EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTC
T ss_pred             EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCC
Confidence            677777744322    22222 236788888888754321110 0   111112223333 2221     11112 2345


Q ss_pred             CCCEEEeeCCCCCC----CCCcccCCCcccceeecccccccc-----CChhHHhcccccceeEccCCCCCCCCCCCccee
Q 039239           67 SLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPI  137 (323)
Q Consensus        67 ~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l  137 (323)
                      +|++|+|++|.+..    .++..+..+++|++|++++|.|+.     ++..+...+ +|+.|+++ +|.       +...
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls-~N~-------i~~~  226 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVA-YNG-------AGDT  226 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECC-SSC-------CCHH
T ss_pred             ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECC-CCC-------CCHH
Confidence            66666666665432    233344555666666666666642     234445555 66666666 555       3322


Q ss_pred             c---CccccccCCCCCeecCCCC
Q 039239          138 T---LSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       138 ~---L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .   +...+...++|++|||++|
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHHHHHhCCCCCEEeccCC
Confidence            1   1223345566666666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.17  E-value=5.7e-08  Score=95.69  Aligned_cols=118  Identities=17%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             EEecCCCCCCcCCcccC-CCCCCCEEeeeCCCCCcc--CCCCc---CCcchhhhcCccc----cccccccccCCCCCCEE
Q 039239            2 LDLSDCKSLKSLPAEIS-NLESLKKLNLSGCSKLKR--LPEFS---SAGNIEEICGCKR----LKSLPSSICKLKSLKVL   71 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~-~L~~L~~L~Ls~c~~l~~--~p~~~---~~l~l~~L~~~~~----l~~lP~~i~~L~~L~~L   71 (323)
                      |+|++|.+....+..+. .+++|++|+|++|...+.  ++...   ..++..++++|.-    ...++.....+++|+.|
T Consensus       110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L  189 (594)
T 2p1m_B          110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL  189 (594)
T ss_dssp             EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred             EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence            67888875555555553 578888888888854433  33222   1222333444441    11233333466788888


Q ss_pred             EeeCCCCCCCCC-----cccCCCcccceeecccc-ccccCChhHHhcccccceeEcc
Q 039239           72 NLDGCSNIQKLP-----HELGNLEALNSLYAKGI-ATTEVPSSVVRLNNKLYELSSD  122 (323)
Q Consensus        72 ~Ls~n~~~~~lp-----~~l~~l~~L~~L~L~~n-~i~~lP~~i~~l~~~L~~L~l~  122 (323)
                      ++++|.  +.+.     ..+..+++|++|++++| .++.+|..+..++ +|+.|++.
T Consensus       190 ~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~l~  243 (594)
T 2p1m_B          190 NISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-QLEELGTG  243 (594)
T ss_dssp             ECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-TCSEEECS
T ss_pred             EecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-cceEcccc
Confidence            888775  2222     12344577888888877 3455666777777 77777654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.15  E-value=3.4e-07  Score=77.20  Aligned_cols=116  Identities=18%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             cCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC----CCcccCCCccc
Q 039239           17 ISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK----LPHELGNLEAL   92 (323)
Q Consensus        17 i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~----lp~~l~~l~~L   92 (323)
                      +...++|++|+|++|..++.                .....+...+...++|++|+|++|.+...    +.+.+...++|
T Consensus        32 l~~~~~L~~L~L~~n~~i~~----------------~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L   95 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPV----------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL   95 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCH----------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSC
T ss_pred             HhcCCCCCEEEecCCCCCCH----------------HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCc
Confidence            45677788888887622221                12223444555667888888888875432    33445555778


Q ss_pred             ceeecccccccc-----CChhHHhcccccceeEc--cCCCCCCCCCCCcceec---CccccccCCCCCeecCCCC
Q 039239           93 NSLYAKGIATTE-----VPSSVVRLNNKLYELSS--DRSRRGDKQMGLLLPIT---LSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        93 ~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l--~~~n~~~~~~~~L~~l~---L~~~l~~l~~L~~L~Ls~N  157 (323)
                      ++|++++|.|+.     +...+...+ .|+.|++  + +|.       +..-.   +...+...++|++|+|++|
T Consensus        96 ~~L~L~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~~-~N~-------i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           96 KSLNVESNFISGSGILALVEALQSNT-SLIELRIDNQ-SQP-------LGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CEEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECCCC-SSC-------CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CEEECcCCcCCHHHHHHHHHHHHhCC-CceEEEecCC-CCC-------CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            888888888753     455566666 7888888  5 565       22211   1234456678888888888

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.07  E-value=4.4e-07  Score=89.27  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             CCCCCCCEEeeeCCCCCccCCCCc----CCcchhhhcCcccccc--ccccccCCCCCCEEEeeCCCCCCCCCc----ccC
Q 039239           18 SNLESLKKLNLSGCSKLKRLPEFS----SAGNIEEICGCKRLKS--LPSSICKLKSLKVLNLDGCSNIQKLPH----ELG   87 (323)
Q Consensus        18 ~~L~~L~~L~Ls~c~~l~~~p~~~----~~l~l~~L~~~~~l~~--lP~~i~~L~~L~~L~Ls~n~~~~~lp~----~l~   87 (323)
                      ..+++|++|+|++|......+..+    ..++..++.+|..++.  ++..+.++++|++|++++|.+.+..++    ...
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            358899999999997655433222    2333445667766654  566566899999999999986554333    334


Q ss_pred             CCcccceeeccccc--cc--cCChhHHhcccccceeEccCCCC
Q 039239           88 NLEALNSLYAKGIA--TT--EVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        88 ~l~~L~~L~L~~n~--i~--~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+++|++|++++|.  ++  .++..+..++ +|+.|+++ +|.
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~-~L~~L~L~-~~~  222 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCP-NLKSLKLN-RAV  222 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCT-TCCEEECC-TTS
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCC-CCcEEecC-CCC
Confidence            67799999999987  31  2333345667 99999999 773

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=3e-05  Score=70.83  Aligned_cols=89  Identities=10%  Similarity=0.028  Sum_probs=70.3

Q ss_pred             ccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccc-eeeccccccccCC-hhHHhcccccceeEccCCCCCCCC
Q 039239           54 RLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALN-SLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQ  130 (323)
Q Consensus        54 ~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~-~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~  130 (323)
                      .+..+|+ .|.++++|+.+++++| +...-+..|.++.+|+ .+++.+ .++.++ .++..++ +|+.++++ ++.    
T Consensus       237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~-~L~~l~l~-~n~----  308 (329)
T 3sb4_A          237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD-NLRYVLAT-GDK----  308 (329)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-TEEEEEEC-SSC----
T ss_pred             CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc-cCCEEEeC-CCc----
Confidence            4666665 4788999999999986 4443445689999999 999988 787775 6788888 99999998 777    


Q ss_pred             CCCcceecCccccccCCCCCeecC
Q 039239          131 MGLLLPITLSIDGLHMTDLRHFDL  154 (323)
Q Consensus       131 ~~~L~~l~L~~~l~~l~~L~~L~L  154 (323)
                         ++.+. +..|.++++|+.++.
T Consensus       309 ---i~~I~-~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          309 ---ITTLG-DELFGNGVPSKLIYK  328 (329)
T ss_dssp             ---CCEEC-TTTTCTTCCCCEEEC
T ss_pred             ---cCccc-hhhhcCCcchhhhcc
Confidence               77773 357889999998864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.83  E-value=2e-06  Score=80.53  Aligned_cols=122  Identities=14%  Similarity=0.007  Sum_probs=82.1

Q ss_pred             EEecCCCCCCcCCccc-CCCCCCCEEeeeCCCCCccCCCCc--------CCcchhhhcCccccc-----cccccccCCCC
Q 039239            2 LDLSDCKSLKSLPAEI-SNLESLKKLNLSGCSKLKRLPEFS--------SAGNIEEICGCKRLK-----SLPSSICKLKS   67 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i-~~L~~L~~L~Ls~c~~l~~~p~~~--------~~l~l~~L~~~~~l~-----~lP~~i~~L~~   67 (323)
                      |+|++|.+...-...+ ..+++|++|+|++|.....-...+        ..+...++++|. ++     .++..+..+++
T Consensus       106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~  184 (372)
T 3un9_A          106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTS  184 (372)
T ss_dssp             EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSS
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCC
Confidence            7888887543222222 235688999999986543211111        122233445543 33     35666778899


Q ss_pred             CCEEEeeCCCCCC----CCCcccCCCcccceeecccccccc-----CChhHHhcccccceeEccCCCC
Q 039239           68 LKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        68 L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      |++|+|++|.+..    .+++.+...++|++|++++|.|+.     ++..+...+ +|+.|+++ +|.
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-~L~~L~Ls-~N~  250 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-SLELLHLY-FNE  250 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-SCCEEECT-TSS
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-CCCEEecc-CCC
Confidence            9999999998653    235567778899999999999963     455666778 99999999 887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.77  E-value=3.2e-05  Score=72.17  Aligned_cols=15  Identities=20%  Similarity=0.503  Sum_probs=8.3

Q ss_pred             cCCCCCCCEEeeeCC
Q 039239           17 ISNLESLKKLNLSGC   31 (323)
Q Consensus        17 i~~L~~L~~L~Ls~c   31 (323)
                      +..+++|+.|+|++|
T Consensus       168 l~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGT  182 (362)
T ss_dssp             HHTCTTCCEEEEECC
T ss_pred             HhcCCCCcEEEEeCC
Confidence            344556666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.73  E-value=3.3e-05  Score=68.94  Aligned_cols=61  Identities=20%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             CCCCCCEEEeeCCCCCC--CCCcccCCCcccceeeccccccccCChhHHhccc-ccceeEccCCCC
Q 039239           64 KLKSLKVLNLDGCSNIQ--KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNN-KLYELSSDRSRR  126 (323)
Q Consensus        64 ~L~~L~~L~Ls~n~~~~--~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~-~L~~L~l~~~n~  126 (323)
                      ++++|+.|+|++|.+.+  .+|..++.+++|+.|+|++|.|..+ ..+..+.. +|++|+++ +|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~-~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLD-GNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECT-TST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEcc-CCc
Confidence            45566666666665554  3444455566666666666666544 22222221 45666666 555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.67  E-value=7.9e-06  Score=68.72  Aligned_cols=106  Identities=13%  Similarity=0.118  Sum_probs=76.8

Q ss_pred             EEecCC-CCCC----cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCC
Q 039239            2 LDLSDC-KSLK----SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGC   76 (323)
Q Consensus         2 L~Ls~n-~~l~----~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n   76 (323)
                      |+|++| .+..    .+...+...++|++|+|++|.....                 ....+...+...++|++|+|++|
T Consensus        41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~-----------------g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP-----------------VAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH-----------------HHHHHHHHHHHCSSCCEEECCSS
T ss_pred             EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH-----------------HHHHHHHHHHhCCCcCEEECcCC
Confidence            788888 5332    2455567789999999999753211                 12234444556688999999999


Q ss_pred             CCCCC----CCcccCCCcccceeec--ccccccc-----CChhHHhcccccceeEccCCCC
Q 039239           77 SNIQK----LPHELGNLEALNSLYA--KGIATTE-----VPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        77 ~~~~~----lp~~l~~l~~L~~L~L--~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+...    +.+.+...++|++|++  ++|.|+.     +...+...+ +|+.|+++ +|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~-~n~  162 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYH-FTQ  162 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECC-CSS
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-CcCEEecc-CCC
Confidence            87643    4566778889999999  8899863     455666667 89999999 776

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.62  E-value=0.00019  Score=67.77  Aligned_cols=91  Identities=11%  Similarity=0.113  Sum_probs=40.0

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCC-cccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL  139 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L  139 (323)
                      |.++++|+.+++..+  ...++ ..|.+ .+|+.+.+ .+.+..++ .++..++ +|+.+.+. ++....  ..+..+. 
T Consensus       222 F~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~-~L~~l~l~-~~~~~~--~~~~~I~-  292 (401)
T 4fdw_A          222 FLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCP-ELAEVTTY-GSTFND--DPEAMIH-  292 (401)
T ss_dssp             TTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCT-TCCEEEEE-SSCCCC--CTTCEEC-
T ss_pred             hhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCC-CCCEEEeC-CccccC--CcccEEC-
Confidence            444555555555542  22222 22333 45555555 23344442 3444555 56666655 333100  0011221 


Q ss_pred             ccccccCCCCCeecCCCCc-ccC
Q 039239          140 SIDGLHMTDLRHFDLSGNF-KLD  161 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~Nl-~lP  161 (323)
                      ...|.++++|+.+++.+++ .|+
T Consensus       293 ~~aF~~c~~L~~l~l~~~i~~I~  315 (401)
T 4fdw_A          293 PYCLEGCPKLARFEIPESIRILG  315 (401)
T ss_dssp             TTTTTTCTTCCEECCCTTCCEEC
T ss_pred             HHHhhCCccCCeEEeCCceEEEh
Confidence            2445566666666666444 444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.62  E-value=5.4e-05  Score=63.21  Aligned_cols=93  Identities=12%  Similarity=0.109  Sum_probs=64.6

Q ss_pred             cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccc-ccc-CChhHHhc---ccccceeEccCCCCCCCCC
Q 039239           57 SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIA-TTE-VPSSVVRL---NNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        57 ~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~-i~~-lP~~i~~l---~~~L~~L~l~~~n~~~~~~  131 (323)
                      .+|.....-.+|+.||+++|.+...--..+..+++|++|++++|. |+. -=..+..+   ..+|+.|+++ +|..    
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls-~C~~----  126 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII-SCGN----  126 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEE-SCTT----
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcC-CCCc----
Confidence            456543334579999999998665433557889999999999996 642 11234432   1279999999 8864    


Q ss_pred             CCcceecCccccccCCCCCeecCCCC
Q 039239          132 GLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                        ++.-.+ ..+.++++|++|++++|
T Consensus       127 --ITD~Gl-~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          127 --VTDKGI-IALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             --CCHHHH-HHGGGCTTCCEEEEESC
T ss_pred             --CCHHHH-HHHhcCCCCCEEECCCC
Confidence              333322 24578999999999999

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.54  E-value=3.5e-05  Score=68.76  Aligned_cols=63  Identities=21%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             CCCcccceeecccccccc---CChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCC--CCCeecCCCC-c--
Q 039239           87 GNLEALNSLYAKGIATTE---VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMT--DLRHFDLSGN-F--  158 (323)
Q Consensus        87 ~~l~~L~~L~L~~n~i~~---lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~--~L~~L~Ls~N-l--  158 (323)
                      .++++|+.|+|++|.|..   +|..+..++ +|+.|+|+ +|.       ++.+   ..+..++  +|++|+|++| +  
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls-~N~-------i~~~---~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLS-GNE-------LKSE---RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECT-TSC-------CCSG---GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECC-CCc-------cCCc---hhhhhcccCCcceEEccCCcCcc
Confidence            467899999999999965   457788999 99999999 888       5554   2334444  9999999999 7  


Q ss_pred             ccC
Q 039239          159 KLD  161 (323)
Q Consensus       159 ~lP  161 (323)
                      .+|
T Consensus       235 ~~~  237 (267)
T 3rw6_A          235 TFR  237 (267)
T ss_dssp             GCS
T ss_pred             ccC
Confidence            565

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.46  E-value=0.00087  Score=63.18  Aligned_cols=55  Identities=9%  Similarity=0.039  Sum_probs=33.1

Q ss_pred             CCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccc-----cCC-hhHHhcccccceeEcc
Q 039239           66 KSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATT-----EVP-SSVVRLNNKLYELSSD  122 (323)
Q Consensus        66 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~-----~lP-~~i~~l~~~L~~L~l~  122 (323)
                      .+|+.+.+.. ++...-...|.++++|+.+++.++.+.     .++ ..+..++ +|+.+.+.
T Consensus       248 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~  308 (401)
T 4fdw_A          248 SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIP  308 (401)
T ss_dssp             CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCC
T ss_pred             CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeC
Confidence            5677777754 333333455677777777777666553     343 3555666 67777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.39  E-value=3.6e-05  Score=64.32  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=62.1

Q ss_pred             cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC-CCcccCCC-
Q 039239           12 SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK-LPHELGNL-   89 (323)
Q Consensus        12 ~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~-lp~~l~~l-   89 (323)
                      .+|.....-..|+.||+++|.. ..                ..+.    .+.++++|+.|+|++|..++. --..++.+ 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~I-td----------------~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~  110 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCI-MS----------------IGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLE  110 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCC-CG----------------GGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCH
T ss_pred             cCCcccCCCceEeEEeCcCCCc-cH----------------HHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcc
Confidence            4565433345799999999852 11                1121    245788999999999975433 11234444 


Q ss_pred             ---cccceeeccccc-ccc-CChhHHhcccccceeEccCCCCC
Q 039239           90 ---EALNSLYAKGIA-TTE-VPSSVVRLNNKLYELSSDRSRRG  127 (323)
Q Consensus        90 ---~~L~~L~L~~n~-i~~-lP~~i~~l~~~L~~L~l~~~n~~  127 (323)
                         ++|++|++++|. |+. -=..+..++ +|+.|+++ +|..
T Consensus       111 ~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~-~L~~L~L~-~c~~  151 (176)
T 3e4g_A          111 NLQKSMLEMEIISCGNVTDKGIIALHHFR-NLKYLFLS-DLPG  151 (176)
T ss_dssp             HHHHHCCEEEEESCTTCCHHHHHHGGGCT-TCCEEEEE-SCTT
T ss_pred             cccCCCCEEEcCCCCcCCHHHHHHHhcCC-CCCEEECC-CCCC
Confidence               369999999985 652 113567788 99999999 8874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.88  E-value=0.00032  Score=65.30  Aligned_cols=125  Identities=15%  Similarity=0.079  Sum_probs=77.9

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCC--CCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGC--SNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n--~~~   79 (323)
                      |+|++|... .++. +. +++|+.|+|..|......                 +..+  ....+++|+.|+|+.+  ...
T Consensus       177 L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~-----------------l~~l--~~~~lp~L~~L~L~~~~~~~~  234 (362)
T 2ra8_A          177 LKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSV-----------------VEDI--LGSDLPNLEKLVLYVGVEDYG  234 (362)
T ss_dssp             EEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHH-----------------HHHH--HHSBCTTCCEEEEECBCGGGT
T ss_pred             EEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHH-----------------HHHH--HHccCCCCcEEEEeccccccc
Confidence            677776322 3454 54 899999999986422110                 0001  0126788999998642  111


Q ss_pred             CC-----CCccc--CCCcccceeeccccccc-cCChhHH---hcccccceeEccCCCCCCCCCCCcceec---Ccccccc
Q 039239           80 QK-----LPHEL--GNLEALNSLYAKGIATT-EVPSSVV---RLNNKLYELSSDRSRRGDKQMGLLLPIT---LSIDGLH  145 (323)
Q Consensus        80 ~~-----lp~~l--~~l~~L~~L~L~~n~i~-~lP~~i~---~l~~~L~~L~l~~~n~~~~~~~~L~~l~---L~~~l~~  145 (323)
                      +.     +...+  ..+++|++|++.+|.++ ..+..+.   .++ +|++|+++ .|.       +....   +...+.+
T Consensus       235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~-~L~~LdLs-~n~-------L~d~G~~~L~~~L~~  305 (362)
T 2ra8_A          235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP-QLETMDIS-AGV-------LTDEGARLLLDHVDK  305 (362)
T ss_dssp             CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG-GCSEEECC-SSC-------CBHHHHHHHHTTHHH
T ss_pred             cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC-CCCEEECC-CCC-------CChHHHHHHHhhccc
Confidence            11     11222  35789999999999885 2334444   467 89999999 776       44321   1234467


Q ss_pred             CCCCCeecCCCC
Q 039239          146 MTDLRHFDLSGN  157 (323)
Q Consensus       146 l~~L~~L~Ls~N  157 (323)
                      +++|+.|++++|
T Consensus       306 l~~L~~L~L~~n  317 (362)
T 2ra8_A          306 IKHLKFINMKYN  317 (362)
T ss_dssp             HTTCSEEECCSB
T ss_pred             CCcceEEECCCC
Confidence            899999999999

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.87  E-value=0.0021  Score=54.49  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=19.9

Q ss_pred             ccCCCCCCEEEeeCCCCCC----CCCcccCCCcccceeeccccccc
Q 039239           62 ICKLKSLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATT  103 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~  103 (323)
                      +..-+.|+.|+|++|.+..    .+-+.+..-+.|++|+|++|.|+
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3334555666665554431    12222333345566666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.93  E-value=0.021  Score=44.83  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=28.8

Q ss_pred             EEEeeCCCCC-CCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCC
Q 039239           70 VLNLDGCSNI-QKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        70 ~L~Ls~n~~~-~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~  126 (323)
                      .++.+++.+. ..+|..+  -.+|++|+|++|.|+.+|.. +..++ +|+.|+|. +|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~-~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALP-ALRTAHLG-ANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCT-TCCEEECC-SSC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhcc-ccCEEEec-CCC
Confidence            4555554432 2555443  23566667777766666543 34455 66666666 554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.79  E-value=0.13  Score=47.27  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=27.2

Q ss_pred             cCCCCCCEEEeeCCCCCCCCC-cccCCCcccceeeccccccccCCh-hHHhcccccceeEcc
Q 039239           63 CKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSD  122 (323)
Q Consensus        63 ~~L~~L~~L~Ls~n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~  122 (323)
                      .++.+|+.+.+..+  ...++ ..|..+.+|+.+.+.++.++.++. ++.++. +|+.+.+.
T Consensus       260 ~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-~L~~i~lp  318 (379)
T 4h09_A          260 QNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV-KLSSVTLP  318 (379)
T ss_dssp             TTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT-TCCEEECC
T ss_pred             ceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCC-CCCEEEcC
Confidence            34455555555432  22222 234555555555555555555432 344444 55555553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.73  E-value=0.032  Score=43.71  Aligned_cols=49  Identities=24%  Similarity=0.188  Sum_probs=38.0

Q ss_pred             cccc--cccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccc
Q 039239           53 KRLK--SLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATT  103 (323)
Q Consensus        53 ~~l~--~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~  103 (323)
                      +.++  ++|..+  -.+|++|+|++|.+...-+..|..+++|+.|+|++|.+.
T Consensus        18 ~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           18 RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455  677654  247999999998876655567888999999999999873

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.46  E-value=0.092  Score=48.66  Aligned_cols=82  Identities=17%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCC-cccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL  139 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L  139 (323)
                      +.++++|+.+.+.. . ...++ ..|.++.+|+.+++..+ ++.|. .++..+. +|+.+.+. .+        ++.+. 
T Consensus       284 F~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~-~L~~i~ip-~s--------v~~I~-  349 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE-QLERIAIP-SS--------VTKIP-  349 (394)
T ss_dssp             TTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEC-TT--------CCBCC-
T ss_pred             cccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC-CCCEEEEC-cc--------cCEEh-
Confidence            44566777777653 2 22333 35666777777777543 44453 3455566 67777664 22        33332 


Q ss_pred             ccccccCCCCCeecCCCC
Q 039239          140 SIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~N  157 (323)
                      ..+|.++++|+.+++.++
T Consensus       350 ~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          350 ESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             GGGGTTCTTCCEEEESSC
T ss_pred             HhHhhCCCCCCEEEECCc
Confidence            245667777777777766

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.34  E-value=0.022  Score=48.13  Aligned_cols=86  Identities=17%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             cCCCCCCEEEeeCCCCCCC-----CCcccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCC
Q 039239           63 CKLKSLKVLNLDGCSNIQK-----LPHELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMG  132 (323)
Q Consensus        63 ~~L~~L~~L~Ls~n~~~~~-----lp~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~  132 (323)
                      .+-+.|++|+|++|+.++.     +-+.+..-+.|+.|+|++|.|+     .+-..+..-+ .|+.|+++ .|.      
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~-~N~------  109 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVE-SNF------  109 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECC-SSB------
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecC-CCc------
Confidence            4557899999998633332     3355677788999999999996     3455666667 89999999 776      


Q ss_pred             CcceecC---ccccccCCCCCeecCCCC
Q 039239          133 LLLPITL---SIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       133 ~L~~l~L---~~~l~~l~~L~~L~Ls~N  157 (323)
                       +..-..   ...+..-+.|++|+|++|
T Consensus       110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          110 -LTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             -CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             -CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence             222111   134455667999999865

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.36  E-value=0.44  Score=43.53  Aligned_cols=88  Identities=15%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             ccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239           62 ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS  140 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~  140 (323)
                      +.++..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++. .+..+. +|+.+.+. ++.       ++.+. .
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~-~L~~i~l~-~~~-------i~~I~-~  303 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS-NLTKVVMD-NSA-------IETLE-P  303 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT-TCCEEEEC-CTT-------CCEEC-T
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc-cccccccc-ccc-------cceeh-h
Confidence            445667777777653 22222345666777777777543 555543 455566 77777776 554       45552 2


Q ss_pred             cccccCCCCCeecCCCCc-ccC
Q 039239          141 IDGLHMTDLRHFDLSGNF-KLD  161 (323)
Q Consensus       141 ~~l~~l~~L~~L~Ls~Nl-~lP  161 (323)
                      .+|.++++|+.++|..++ .|.
T Consensus       304 ~aF~~c~~L~~i~lp~~l~~I~  325 (379)
T 4h09_A          304 RVFMDCVKLSSVTLPTALKTIQ  325 (379)
T ss_dssp             TTTTTCTTCCEEECCTTCCEEC
T ss_pred             hhhcCCCCCCEEEcCccccEEH
Confidence            467777788887776554 554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.31  E-value=0.15  Score=47.11  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITL  139 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L  139 (323)
                      .+.++++|+.+.+..+ ....-...+.++.+|+.+.+. +.+..++. .+..+. +|+.+.+. .+        ++.+. 
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp-~~--------v~~I~-  326 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIP-EG--------ITQIL-  326 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECC-TT--------CCEEC-
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCC-CcCEEEeC-Cc--------ccEeh-
Confidence            4667889999999763 333333567889999999986 45667765 566677 89999986 43        45553 


Q ss_pred             ccccccCCCCCeecCCCCc-ccCccccccccchhhhhhhhhhh
Q 039239          140 SIDGLHMTDLRHFDLSGNF-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~Nl-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      ..+|.++++|+.+.+..++ .|....+...  .+|+.+.+..+
T Consensus       327 ~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C--~~L~~i~~~~~  367 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSSVTKIPESAFSNC--TALNNIEYSGS  367 (394)
T ss_dssp             TTTTTTCTTCCEEEECTTCCBCCGGGGTTC--TTCCEEEESSC
T ss_pred             HhHhhCCCCCCEEEECcccCEEhHhHhhCC--CCCCEEEECCc
Confidence            3578899999999997765 6664333333  55666554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.37  E-value=0.36  Score=44.59  Aligned_cols=12  Identities=8%  Similarity=0.230  Sum_probs=6.9

Q ss_pred             CCCCCCEEeeeC
Q 039239           19 NLESLKKLNLSG   30 (323)
Q Consensus        19 ~L~~L~~L~Ls~   30 (323)
                      ...+|+.+.+..
T Consensus       228 ~~~~l~~i~ip~  239 (394)
T 4fs7_A          228 SKTGVKNIIIPD  239 (394)
T ss_dssp             TTCCCCEEEECT
T ss_pred             ccCCCceEEECC
Confidence            345666666643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.36  E-value=0.53  Score=43.39  Aligned_cols=15  Identities=27%  Similarity=0.383  Sum_probs=10.5

Q ss_pred             ccCCCCCCCEEeeeC
Q 039239           16 EISNLESLKKLNLSG   30 (323)
Q Consensus        16 ~i~~L~~L~~L~Ls~   30 (323)
                      .|.++++|+.+.+.+
T Consensus       157 aF~~c~~L~~i~l~~  171 (394)
T 4fs7_A          157 AFATCESLEYVSLPD  171 (394)
T ss_dssp             TTTTCTTCCEEECCT
T ss_pred             hhcccCCCcEEecCC
Confidence            466677888877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 3   DLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEIC--GCKRLKSLPS 60
           DL + +   +LP  ++ L+ L  LN+S  +    +P+  +    +       K L   P 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 61  SIC 63
             C
Sbjct: 310 PAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 49  ICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKG 99
           +   +   +LP  + +LK L  LN+   +   ++P + GNL+  +      
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEI-CGCKRLKSLP 59
            L L     +  +   +S+L  L++L  +   K+  +   ++  NI  +  G  ++  L 
Sbjct: 311 YLTLYFNN-ISDIS-PVSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQISDLT 367

Query: 60  SSICKLKSLKVLNLDG 75
             +  L  +  L L+ 
Sbjct: 368 P-LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 2   LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
           LDL++ +     P  +S L  L +L L    ++  +   +    +  +   +      S 
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQLEDISP 302

Query: 62  ICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSS 121
           I  LK+L  L L    NI  +   + +L  L  L+      ++  SS+  L N +  LS+
Sbjct: 303 ISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANNKVSD-VSSLANLTN-INWLSA 358

Query: 122 DRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN 157
             ++           I+      ++T +    L+  
Sbjct: 359 GHNQ-----------ISDLTPLANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 19/117 (16%), Positives = 32/117 (27%), Gaps = 25/117 (21%)

Query: 6   DC--KSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSIC 63
            C    L+ +P ++        L+L    K+  +                          
Sbjct: 16  QCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIK--------------------DGDFK 52

Query: 64  KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELS 120
            LK+L  L L      +  P     L  L  LY       E+P  + +   +L    
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 18/95 (18%)

Query: 2  LDLSDCK-SLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS 60
          LD+   + S       +  L+  + + L  C         + A            K + S
Sbjct: 7  LDIQCEELSDARWAELLPLLQQCQVVRLDDCG-------LTEAR----------CKDISS 49

Query: 61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSL 95
          ++    +L  LNL          H +       S 
Sbjct: 50 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 84

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 20/96 (20%)

Query: 2   LDLSDCK----SLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKS 57
           L L+DC     S  SL A +    SL++L+LS             AG I ++      +S
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-------LGDAG-ILQLV-----ES 420

Query: 58  LPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALN 93
           +    C L+    L L      +++   L  LE   
Sbjct: 421 VRQPGCLLEQ---LVLYDIYWSEEMEDRLQALEKDK 453

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 17/79 (21%)

Query: 2  LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSS 61
          LD    +  KS+ A +   +S+K++ LSG +                  G +  + L  +
Sbjct: 12 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-----------------IGTEAARWLSEN 54

Query: 62 ICKLKSLKVLNLDGCSNIQ 80
          I   K L++         +
Sbjct: 55 IASKKDLEIAEFSDIFTGR 73

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 28/116 (24%)

Query: 1   MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPS 60
                   S   + +      SL++LN+S                        +L  LP+
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNN----------------------KLIELPA 301

Query: 61  SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSV--VRLNN 114
                  L+ L      ++ ++P    NL+ L+  Y       ++P SV  +R+N+
Sbjct: 302 LPP---RLERLIASFN-HLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 2  LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSS 42
          L+L++   L SLP    +LES   L  S C+ L  LPE   
Sbjct: 43 LELNNLG-LSSLPELPPHLES---LVAS-CNSLTELPELPQ 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.26
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.23
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.16
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.04
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.04
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.93
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.85
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.52

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=133.55  Aligned_cols=167  Identities=22%  Similarity=0.180  Sum_probs=110.6

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCC--cchhhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSA--GNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~--l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |+|++|++.+..+..|.++++|++|+|++|. +..+|.+...  ++..++++ +.+..+|..+.++++|++|++++|.+.
T Consensus        36 L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~l~~~~~~  113 (266)
T d1p9ag_          36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLT  113 (266)
T ss_dssp             EECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSCCC
T ss_pred             EECcCCcCCCcCHHHhhcccccccccccccc-cccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence            6777776443333556777777777777763 4455543221  12223444 356666777777777777777777766


Q ss_pred             CCCCcccCCCcccceeeccccccccCChh-HHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSS-VVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-  157 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~-i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-  157 (323)
                      +..+..+..+.++++|++++|.+..+|.. +..++ .++.++++ +|.       ++.+. +..+..+++|++|+|++| 
T Consensus       114 ~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~-~l~~l~l~-~N~-------l~~~~-~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-KLEKLSLA-NNN-------LTELP-AGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECT-TSC-------CSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             eeeccccccccccccccccccccceeccccccccc-cchhcccc-ccc-------ccccC-ccccccccccceeecccCC
Confidence            66666677777777888887777777554 34455 78888887 776       56552 245788999999999999 


Q ss_pred             c-ccCccccccccchhhhhhhhhhhhh
Q 039239          158 F-KLDRKEVRGIFEDALQDIQLMAAAR  183 (323)
Q Consensus       158 l-~lP~~~L~~L~~~sL~~l~l~~n~~  183 (323)
                      + .||+ .+..+  .+|+.+++..|++
T Consensus       184 L~~lp~-~~~~~--~~L~~L~L~~Np~  207 (266)
T d1p9ag_         184 LYTIPK-GFFGS--HLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCCCT-TTTTT--CCCSEEECCSCCB
T ss_pred             CcccCh-hHCCC--CCCCEEEecCCCC
Confidence            8 8883 33333  6777777777743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.57  E-value=9.6e-16  Score=138.17  Aligned_cols=101  Identities=25%  Similarity=0.297  Sum_probs=60.6

Q ss_pred             EEecCCCCCC--cCCcccCCCCCCCEEeeeC-CCCCccCCCCcCCcc---hhhhcC------------------------
Q 039239            2 LDLSDCKSLK--SLPAEISNLESLKKLNLSG-CSKLKRLPEFSSAGN---IEEICG------------------------   51 (323)
Q Consensus         2 L~Ls~n~~l~--~lP~~i~~L~~L~~L~Ls~-c~~l~~~p~~~~~l~---l~~L~~------------------------   51 (323)
                      |||++|...+  .+|+.++++++|++|+|++ |+..+.+|+.++.+.   ..++++                        
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            6778877665  5777888888888888876 455667777665543   222223                        


Q ss_pred             ccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCccc-ceeecccccc
Q 039239           52 CKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEAL-NSLYAKGIAT  102 (323)
Q Consensus        52 ~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L-~~L~L~~n~i  102 (323)
                      +.....+|.+++++++|+++++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            23333455556666666666666666555666555555443 4455555444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=3.1e-15  Score=134.81  Aligned_cols=127  Identities=23%  Similarity=0.272  Sum_probs=100.4

Q ss_pred             CCCCEEeeeCCCCCc--cCCCCcCCcc---hhhhcCcccc-ccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccce
Q 039239           21 ESLKKLNLSGCSKLK--RLPEFSSAGN---IEEICGCKRL-KSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNS   94 (323)
Q Consensus        21 ~~L~~L~Ls~c~~l~--~~p~~~~~l~---l~~L~~~~~l-~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~   94 (323)
                      ..++.|+|+++...+  .+|+.++.++   ..+|++|+.+ +++|++|+++++|++|+|++|++.+..|..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999998877  5788777665   3456676655 489999999999999999999999999999999999999


Q ss_pred             eecccccc-ccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCC-CeecCCCC
Q 039239           95 LYAKGIAT-TEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDL-RHFDLSGN  157 (323)
Q Consensus        95 L~L~~n~i-~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L-~~L~Ls~N  157 (323)
                      +++++|.+ ..+|.++..++ .++.++++ +|.       +.. .+|..+..+.++ +.+++++|
T Consensus       130 l~l~~N~~~~~~p~~l~~l~-~L~~l~l~-~n~-------l~~-~ip~~~~~l~~l~~~l~~~~n  184 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLP-NLVGITFD-GNR-------ISG-AIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCT-TCCEEECC-SSC-------CEE-ECCGGGGCCCTTCCEEECCSS
T ss_pred             cccccccccccCchhhccCc-ccceeecc-ccc-------ccc-ccccccccccccccccccccc
Confidence            99999987 57899999999 99999999 776       221 124444444443 55555555

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=128.81  Aligned_cols=168  Identities=21%  Similarity=0.252  Sum_probs=126.6

Q ss_pred             CEEecCCCCCCcCC-cccCCCCCCCEEeeeCCCCCccCCCCcCCcc-hhh--hcCccccccc-cccccCCCCCCEEEeeC
Q 039239            1 MLDLSDCKSLKSLP-AEISNLESLKKLNLSGCSKLKRLPEFSSAGN-IEE--ICGCKRLKSL-PSSICKLKSLKVLNLDG   75 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP-~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~-l~~--L~~~~~l~~l-P~~i~~L~~L~~L~Ls~   75 (323)
                      +|+|++|++ +.+| ..|.++++|++|++++|......+....... ...  ....+.+..+ |..+.++++|++|++++
T Consensus        36 ~L~Ls~N~i-~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~  114 (284)
T d1ozna_          36 RIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR  114 (284)
T ss_dssp             EEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred             EEECcCCcC-CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCC
Confidence            388999985 4555 5688899999999998765554444433332 222  2345666677 45688999999999999


Q ss_pred             CCCCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecC
Q 039239           76 CSNIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDL  154 (323)
Q Consensus        76 n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~L  154 (323)
                      |.+....+..+..+.+|+.+++++|.++.+|. .+..++ +|+.|+++ +|.       ++.+. +..+..+++|+++++
T Consensus       115 n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~-~L~~L~l~-~N~-------l~~l~-~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG-NLTHLFLH-GNR-------ISSVP-ERAFRGLHSLDRLLL  184 (284)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECC-SSC-------CCEEC-TTTTTTCTTCCEEEC
T ss_pred             cccccccccccchhcccchhhhccccccccChhHhcccc-chhhcccc-cCc-------ccccc-hhhhccccccchhhh
Confidence            98877777788889999999999999998865 566777 99999999 888       67663 356788999999999


Q ss_pred             CCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          155 SGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       155 s~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      ++| + .+++..+..+  .+|+.+++..|
T Consensus       185 ~~N~l~~i~~~~f~~l--~~L~~L~l~~N  211 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDL--GRLMTLYLFAN  211 (284)
T ss_dssp             CSSCCCEECTTTTTTC--TTCCEEECCSS
T ss_pred             hhccccccChhHhhhh--hhccccccccc
Confidence            999 7 7776666666  66676665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=2.7e-13  Score=113.61  Aligned_cols=124  Identities=18%  Similarity=0.190  Sum_probs=100.0

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      ++.++++ +..+|..+.  +++++|+|++|...+.++                    +..+.++++|++|+|++|.+.+.
T Consensus        13 v~Cs~~~-L~~iP~~lp--~~l~~L~Ls~N~i~~~~~--------------------~~~f~~l~~L~~L~L~~N~i~~~   69 (192)
T d1w8aa_          13 VDCTGRG-LKEIPRDIP--LHTTELLLNDNELGRISS--------------------DGLFGRLPHLVKLELKRNQLTGI   69 (192)
T ss_dssp             EECTTSC-CSSCCSCCC--TTCSEEECCSCCCCSBCC--------------------SCSGGGCTTCCEEECCSSCCCCB
T ss_pred             EEEeCCC-cCccCCCCC--CCCCEEEeCCCCCccccc--------------------ccccCCCceEeeeeccccccccc
Confidence            4556655 668887664  689999999865433222                    23467889999999999999988


Q ss_pred             CCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                      .+..+..+++|++|++++|+|..+|. .+.+++ +|++|+++ +|.       ++.+. +..|..+++|++|+|++| +
T Consensus        70 ~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~-~L~~L~L~-~N~-------l~~i~-~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLH-QLKTLNLY-DNQ-------ISCVM-PGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT-TCCEEECC-SSC-------CCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccccccceeeeccccccccCHHHHhCCC-cccccccC-Ccc-------ccccC-HHHhcCCccccccccccccc
Confidence            88999999999999999999998865 577898 99999999 888       77773 356889999999999999 6

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=2.6e-13  Score=114.44  Aligned_cols=141  Identities=19%  Similarity=0.292  Sum_probs=104.8

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhc-CccccccccccccCCCCCCEEEeeCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEIC-GCKRLKSLPSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~-~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      |++++|. +..++. +..+++|++|++++|.. ..++.+....+++.+. +.+.+..++. +.++++|+.|++++|....
T Consensus        45 L~l~~~~-i~~l~~-l~~l~nL~~L~Ls~N~l-~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~~  120 (199)
T d2omxa2          45 LQADRLG-IKSIDG-VEYLNNLTQINFSNNQL-TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD  120 (199)
T ss_dssp             EECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC
T ss_pred             EECCCCC-CCCccc-cccCCCcCcCccccccc-cCcccccCCcccccccccccccccccc-ccccccccccccccccccc
Confidence            7788887 445654 88899999999999754 4455433222344432 2334566664 7889999999999887655


Q ss_pred             CCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-  158 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-  158 (323)
                      .  +.+..+++|+.|++++|.+..+| .+..++ +|+.|++. +|+       ++.+   ..++++++|++|++++| + 
T Consensus       121 ~--~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~-~L~~L~l~-~n~-------l~~l---~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         121 I--DPLKNLTNLNRLELSSNTISDIS-ALSGLT-SLQQLNFS-SNQ-------VTDL---KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             C--GGGTTCTTCSEEECCSSCCCCCG-GGTTCT-TCSEEECC-SSC-------CCCC---GGGTTCTTCCEEECCSSCCC
T ss_pred             c--cccchhhhhHHhhhhhhhhcccc-cccccc-cccccccc-ccc-------ccCC---ccccCCCCCCEEECCCCCCC
Confidence            3  45788999999999999988775 577888 99999999 887       6665   34788999999999999 7 


Q ss_pred             ccC
Q 039239          159 KLD  161 (323)
Q Consensus       159 ~lP  161 (323)
                      .+|
T Consensus       186 ~i~  188 (199)
T d2omxa2         186 DIS  188 (199)
T ss_dssp             CCG
T ss_pred             CCc
Confidence            775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=4.3e-13  Score=119.94  Aligned_cols=84  Identities=21%  Similarity=0.182  Sum_probs=39.8

Q ss_pred             CCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCCCCcceecCcccccc
Q 039239           67 SLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLH  145 (323)
Q Consensus        67 ~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~  145 (323)
                      +|+.|++++|...+..+..+..++.+++|++++|.+..+ |..+..++ +|++|+++ +|+       ++.+  |.++.+
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~-~L~~L~L~-~N~-------L~~l--p~~l~~  240 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLN-NNK-------LVKV--PGGLAD  240 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECC-SSC-------CSSC--CTTTTT
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc-cceeeecc-ccc-------cccc--cccccc
Confidence            344444444444444444444444555555555555443 23444444 55555555 444       4433  444555


Q ss_pred             CCCCCeecCCCC-c-ccC
Q 039239          146 MTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       146 l~~L~~L~Ls~N-l-~lP  161 (323)
                      +++|++|+|++| + .|+
T Consensus       241 l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             CSSCCEEECCSSCCCCCC
T ss_pred             ccCCCEEECCCCccCccC
Confidence            555555555555 4 444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.4e-13  Score=115.81  Aligned_cols=144  Identities=22%  Similarity=0.176  Sum_probs=114.0

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcc---hhhhcCccccccccccccCCCCCCEEEeeCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGN---IEEICGCKRLKSLPSSICKLKSLKVLNLDGCS   77 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~---l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~   77 (323)
                      +|+|++|+ ++.+|. ++.+++|++|+|++|.. ..++..+..+.   ..+++++......+..+..+.++++|++++|.
T Consensus        59 ~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          59 QLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (266)
T ss_dssp             EEECTTSC-CCEEEC-CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             cccccccc-cccccc-ccccccccccccccccc-cccccccccccccccccccccccceeeccccccccccccccccccc
Confidence            38899997 567776 67899999999999754 44555444433   33455544433344567789999999999998


Q ss_pred             CCCCCCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           78 NIQKLPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        78 ~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      +....+..+..+++|+.+++++|+++.+|. .+..++ +|++|+++ +|.       ++.+  |..+..+++|+.|+|++
T Consensus       136 l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~-~L~~L~Ls-~N~-------L~~l--p~~~~~~~~L~~L~L~~  204 (266)
T d1p9ag_         136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE-NLDTLLLQ-ENS-------LYTI--PKGFFGSHLLPFAFLHG  204 (266)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT-TCCEEECC-SSC-------CCCC--CTTTTTTCCCSEEECCS
T ss_pred             cceeccccccccccchhcccccccccccCcccccccc-ccceeecc-cCC-------Cccc--ChhHCCCCCCCEEEecC
Confidence            777666778889999999999999988864 577888 99999999 898       7876  88888999999999999


Q ss_pred             C-c
Q 039239          157 N-F  158 (323)
Q Consensus       157 N-l  158 (323)
                      | +
T Consensus       205 Np~  207 (266)
T d1p9ag_         205 NPW  207 (266)
T ss_dssp             CCB
T ss_pred             CCC
Confidence            9 5

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=8.9e-13  Score=112.05  Aligned_cols=153  Identities=27%  Similarity=0.362  Sum_probs=109.5

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |++++|. ++.++. +..+++|++|++++|.. ..++......+++  ++++ +.++.+| .+.++++|+.|++++|...
T Consensus        51 L~l~~~~-i~~l~~-l~~l~~L~~L~L~~n~i-~~l~~~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          51 IIANNSD-IKSVQG-IQYLPNVTKLFLNGNKL-TDIKPLANLKNLGWLFLDE-NKVKDLS-SLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             EECTTSC-CCCCTT-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCS-SCCCCGG-GGTTCTTCCEEECTTSCCC
T ss_pred             EECcCCC-CCCchh-HhhCCCCCEEeCCCccc-cCccccccCcccccccccc-ccccccc-ccccccccccccccccccc
Confidence            6788887 445554 78899999999999754 4455432222233  3444 3577777 4788899999999988654


Q ss_pred             CCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c
Q 039239           80 QKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus        80 ~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                       .+ ..+..+++++.+++++|.++..+ .+..++ +|+.++++ +|.       ++.+  + .++++++|++|++++| +
T Consensus       126 -~~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~-~L~~l~l~-~n~-------l~~i--~-~l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         126 -DI-NGLVHLPQLESLYLGNNKITDIT-VLSRLT-KLDTLSLE-DNQ-------ISDI--V-PLAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             -CC-GGGGGCTTCCEEECCSSCCCCCG-GGGGCT-TCSEEECC-SSC-------CCCC--G-GGTTCTTCCEEECCSSCC
T ss_pred             -cc-ccccccccccccccccccccccc-cccccc-cccccccc-ccc-------cccc--c-cccCCCCCCEEECCCCCC
Confidence             33 45778888999999999887654 567788 89999998 887       5554  2 4788999999999999 8


Q ss_pred             -ccCccccccccchhhhhhhh
Q 039239          159 -KLDRKEVRGIFEDALQDIQL  178 (323)
Q Consensus       159 -~lP~~~L~~L~~~sL~~l~l  178 (323)
                       .+|  .+..+  ++|+.+++
T Consensus       191 ~~l~--~l~~l--~~L~~L~L  207 (210)
T d1h6ta2         191 SDLR--ALAGL--KNLDVLEL  207 (210)
T ss_dssp             CBCG--GGTTC--TTCSEEEE
T ss_pred             CCCh--hhcCC--CCCCEEEc
Confidence             776  35554  55555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.3e-12  Score=102.04  Aligned_cols=98  Identities=22%  Similarity=0.288  Sum_probs=66.1

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ   80 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~   80 (323)
                      +|||++|++ ..++. ++++++|++|++++|                      .++++|+.++.+++|++|++++|.+. 
T Consensus         2 ~L~Ls~n~l-~~l~~-l~~l~~L~~L~ls~N----------------------~l~~lp~~~~~l~~L~~L~l~~N~i~-   56 (124)
T d1dcea3           2 VLHLAHKDL-TVLCH-LEQLLLVTHLDLSHN----------------------RLRALPPALAALRCLEVLQASDNALE-   56 (124)
T ss_dssp             EEECTTSCC-SSCCC-GGGGTTCCEEECCSS----------------------CCCCCCGGGGGCTTCCEEECCSSCCC-
T ss_pred             EEEcCCCCC-CCCcc-cccCCCCCEEECCCC----------------------ccCcchhhhhhhhccccccccccccc-
Confidence            367777773 45554 677777777777773                      45556666777777777777776544 


Q ss_pred             CCCcccCCCcccceeeccccccccCC--hhHHhcccccceeEccCCCC
Q 039239           81 KLPHELGNLEALNSLYAKGIATTEVP--SSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        81 ~lp~~l~~l~~L~~L~L~~n~i~~lP--~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+| .++.+++|++|++++|.|+.+|  ..+..++ +|+.|+++ +|.
T Consensus        57 ~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~-~L~~L~l~-~N~  101 (124)
T d1dcea3          57 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQ-GNS  101 (124)
T ss_dssp             CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECT-TSG
T ss_pred             ccC-ccccccccCeEECCCCccCCCCCchhhcCCC-CCCEEECC-CCc
Confidence            344 4777777777777777776665  3456666 67777776 665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=114.52  Aligned_cols=168  Identities=21%  Similarity=0.237  Sum_probs=121.3

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcc-hhh--hcCccccccc-cccccCCCCCCEEEeeC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGN-IEE--ICGCKRLKSL-PSSICKLKSLKVLNLDG   75 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~-l~~--L~~~~~l~~l-P~~i~~L~~L~~L~Ls~   75 (323)
                      +|++++|++....+..+..+..++.+....+..+..++. .+..+. ++.  +.++. +..+ +..+...++|+.+++++
T Consensus        60 ~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~  138 (284)
T d1ozna_          60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD  138 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhcc
Confidence            378888886665566667788888888777777776643 344333 333  34433 3333 44566788899999999


Q ss_pred             CCCCCCCCcccCCCcccceeeccccccccCC-hhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecC
Q 039239           76 CSNIQKLPHELGNLEALNSLYAKGIATTEVP-SSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDL  154 (323)
Q Consensus        76 n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP-~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~L  154 (323)
                      |.+.+..+..+..+++|++|++++|.+..+| ..+..++ +|+.++++ +|.       +..+. |..|.++++|++||+
T Consensus       139 N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~-~L~~l~l~-~N~-------l~~i~-~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH-SLDRLLLH-QNR-------VAHVH-PHAFRDLGRLMTLYL  208 (284)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECC-SSC-------CCEEC-TTTTTTCTTCCEEEC
T ss_pred             ccccccChhHhccccchhhcccccCcccccchhhhcccc-ccchhhhh-hcc-------ccccC-hhHhhhhhhcccccc
Confidence            8877666677888888999999999988775 4667777 89999998 777       56553 567888899999999


Q ss_pred             CCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          155 SGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       155 s~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                      ++| + .+|+..+..+  .+|+.+++..|
T Consensus       209 ~~N~i~~~~~~~~~~~--~~L~~L~l~~N  235 (284)
T d1ozna_         209 FANNLSALPTEALAPL--RALQYLRLNDN  235 (284)
T ss_dssp             CSSCCSCCCHHHHTTC--TTCCEEECCSS
T ss_pred             cccccccccccccccc--cccCEEEecCC
Confidence            999 8 8876666655  66777777666

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.9e-12  Score=101.00  Aligned_cols=96  Identities=26%  Similarity=0.253  Sum_probs=80.4

Q ss_pred             ccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239           54 RLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGL  133 (323)
Q Consensus        54 ~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~  133 (323)
                      .++.++. +.++++|++|++++|.+ ..+|+.++.+++|+.|++++|.|+.+| .+..++ +|+.|+++ +|.       
T Consensus         9 ~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~-~L~~L~l~-~N~-------   76 (124)
T d1dcea3           9 DLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD-GVANLP-RLQELLLC-NNR-------   76 (124)
T ss_dssp             CCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS-SCCEEECC-SSC-------
T ss_pred             CCCCCcc-cccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccC-cccccc-ccCeEECC-CCc-------
Confidence            4555653 78899999999999875 578888999999999999999999987 488999 99999999 888       


Q ss_pred             cceecCccccccCCCCCeecCCCC-c-ccC
Q 039239          134 LLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       134 L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      ++.+.-...++.+++|+.|++++| + .++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            666532356788999999999999 7 554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=2.6e-12  Score=107.54  Aligned_cols=115  Identities=19%  Similarity=0.207  Sum_probs=96.1

Q ss_pred             cccccccccccCCCCCCEEEeeCCCCCCCC-CcccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCC
Q 039239           53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKL-PHELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQ  130 (323)
Q Consensus        53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~l-p~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~  130 (323)
                      +.++++|..+.  +++++|+|++|.+.+.+ +..|+++++|++|++++|.+..+ +..+..++ +|+.|+++ +|+    
T Consensus        18 ~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls-~N~----   89 (192)
T d1w8aa_          18 RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLG-ENK----   89 (192)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECC-SCC----
T ss_pred             CCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccceeeec-ccc----
Confidence            46777887763  68999999999987755 45678999999999999999766 56777788 99999999 998    


Q ss_pred             CCCcceecCccccccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhhh
Q 039239          131 MGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       131 ~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~n  181 (323)
                         ++.+. +..|.++++|++|+|++| + .||+..+..+  .+|+++++..|
T Consensus        90 ---l~~l~-~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l--~~L~~l~L~~N  136 (192)
T d1w8aa_          90 ---IKEIS-NKMFLGLHQLKTLNLYDNQISCVMPGSFEHL--NSLTSLNLASN  136 (192)
T ss_dssp             ---CCEEC-SSSSTTCTTCCEEECCSSCCCEECTTSSTTC--TTCCEEECTTC
T ss_pred             ---ccccC-HHHHhCCCcccccccCCccccccCHHHhcCC--ccccccccccc
Confidence               78773 356899999999999999 9 9997777777  77888877766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=105.44  Aligned_cols=115  Identities=15%  Similarity=0.148  Sum_probs=91.1

Q ss_pred             CCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCccc
Q 039239           13 LPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEAL   92 (323)
Q Consensus        13 lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L   92 (323)
                      .|. +.+..++++|+|++|                      .++.+|..+..+++|++|++++|.+. .+ +.+..+++|
T Consensus        11 ~~~-~~n~~~lr~L~L~~n----------------------~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L   65 (162)
T d1a9na_          11 AAQ-YTNAVRDRELDLRGY----------------------KIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRL   65 (162)
T ss_dssp             SCE-EECTTSCEEEECTTS----------------------CCCSCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSC
T ss_pred             hHh-ccCcCcCcEEECCCC----------------------CCCccCccccccccCCEEECCCCCCC-cc-CCcccCcch
Confidence            354 556889999999995                      35555554567899999999998765 45 468899999


Q ss_pred             ceeeccccccccCChhH-HhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-ccC
Q 039239           93 NSLYAKGIATTEVPSSV-VRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus        93 ~~L~L~~n~i~~lP~~i-~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      ++|++++|.++.+|..+ ..++ +|+.|+++ +|.       ++.+.--..+..+++|++|++++| + .+|
T Consensus        66 ~~L~ls~N~i~~l~~~~~~~l~-~L~~L~L~-~N~-------i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          66 KTLLVNNNRICRIGEGLDQALP-DLTELILT-NNS-------LVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CEEECCSSCCCEECSCHHHHCT-TCCEEECC-SCC-------CCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             hhhhcccccccCCCcccccccc-ccccceec-ccc-------ccccccccccccccccchhhcCCCcccccc
Confidence            99999999999987654 5688 99999999 888       555521145788999999999999 7 776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.7e-12  Score=103.35  Aligned_cols=106  Identities=14%  Similarity=0.202  Sum_probs=82.9

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS  140 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~  140 (323)
                      .+.+..+|++|+|++|.+ ..+|..+..+++|++|++++|.|.+++ .+..++ +|+.|+++ +|.       ++.+  +
T Consensus        13 ~~~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~-~L~~L~ls-~N~-------i~~l--~   79 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLR-RLKTLLVN-NNR-------ICRI--G   79 (162)
T ss_dssp             EEECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCS-SCCEEECC-SSC-------CCEE--C
T ss_pred             hccCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCCCCccC-CcccCc-chhhhhcc-ccc-------ccCC--C
Confidence            356778899999999875 455766678999999999999999885 478888 99999999 888       7776  4


Q ss_pred             cc-cccCCCCCeecCCCC-c-ccCc-cccccccchhhhhhhhhhh
Q 039239          141 ID-GLHMTDLRHFDLSGN-F-KLDR-KEVRGIFEDALQDIQLMAA  181 (323)
Q Consensus       141 ~~-l~~l~~L~~L~Ls~N-l-~lP~-~~L~~L~~~sL~~l~l~~n  181 (323)
                      .. +..+++|++|++++| + .++. ..+..+  ++|+.+++..|
T Consensus        80 ~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l--~~L~~L~l~~N  122 (162)
T d1a9na_          80 EGLDQALPDLTELILTNNSLVELGDLDPLASL--KSLTYLCILRN  122 (162)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC--TTCCEEECCSS
T ss_pred             ccccccccccccceeccccccccccccccccc--cccchhhcCCC
Confidence            33 467999999999999 8 7762 234444  66777776666

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.26  E-value=1.5e-11  Score=109.56  Aligned_cols=147  Identities=14%  Similarity=0.117  Sum_probs=115.2

Q ss_pred             CCcccCCCCCCCEEeeeCCCCCccCCC-CcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcc
Q 039239           13 LPAEISNLESLKKLNLSGCSKLKRLPE-FSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEA   91 (323)
Q Consensus        13 lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~   91 (323)
                      .+..+..+++|+++++++|... .+|. ....+.-.++.++......+..+.+++.+++|++++|.+.+..+..+.++++
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             CccccccccccCccccccCCcc-ccCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            3455677899999999987543 4443 2333334455666666677888999999999999999888887888999999


Q ss_pred             cceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecC-----ccccccCCCCCeecCCCC-c---ccCc
Q 039239           92 LNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL-----SIDGLHMTDLRHFDLSGN-F---KLDR  162 (323)
Q Consensus        92 L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L-----~~~l~~l~~L~~L~Ls~N-l---~lP~  162 (323)
                      |++|++++|.|+++|.++..++ +|+.|+++ +|+       ++.++-     +.....+.+|+.|+|++| +   .++|
T Consensus       221 L~~L~L~~N~L~~lp~~l~~l~-~L~~L~Ls-~N~-------i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         221 LRELHLNNNKLVKVPGGLADHK-YIQVVYLH-NNN-------ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CCEEECCSSCCSSCCTTTTTCS-SCCEEECC-SSC-------CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             ceeeeccccccccccccccccc-CCCEEECC-CCc-------cCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            9999999999999999999999 99999999 888       666521     123356789999999999 5   6777


Q ss_pred             ccccccc
Q 039239          163 KEVRGIF  169 (323)
Q Consensus       163 ~~L~~L~  169 (323)
                      ..++.+.
T Consensus       292 ~~f~~~~  298 (305)
T d1xkua_         292 STFRCVY  298 (305)
T ss_dssp             GGGTTCC
T ss_pred             hHhcccc
Confidence            7766663

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.5e-11  Score=104.17  Aligned_cols=136  Identities=18%  Similarity=0.221  Sum_probs=104.0

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      .|++++|++ ..+++ ++.+++|++|++++|. +..+|......+++.  +.+|. ...++ .+..+++|+++++++|.+
T Consensus        72 ~L~L~~n~i-~~l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2          72 KLFLNGNKL-TDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             EEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCC
T ss_pred             EEeCCCccc-cCccc-cccCcccccccccccc-cccccccccccccccccccccc-ccccc-cccccccccccccccccc
Confidence            378999985 45665 7889999999999975 455665433223333  33433 34444 578899999999999876


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCC
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~  156 (323)
                      ...  ..+..+++|+++++++|.+..++. +..++ +|+.|+++ +|.       ++.+  + .+.++++|++|+|++
T Consensus       147 ~~~--~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~-~L~~L~Ls-~N~-------i~~l--~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         147 TDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLT-KLQNLYLS-KNH-------ISDL--R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCBC--G-GGTTCTTCSEEEEEE
T ss_pred             ccc--cccccccccccccccccccccccc-ccCCC-CCCEEECC-CCC-------CCCC--h-hhcCCCCCCEEEccC
Confidence            542  457789999999999999988864 88899 99999999 888       7766  3 588999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.8e-11  Score=111.65  Aligned_cols=98  Identities=18%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             CCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCcccc
Q 039239           64 KLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDG  143 (323)
Q Consensus        64 ~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l  143 (323)
                      .+..++.+.+++|.+.+ + ..+..++++++|++++|++..++. +..++ +|+.|+++ +|.       ++.+  + .+
T Consensus       283 ~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~-~L~~L~L~-~n~-------l~~l--~-~l  347 (384)
T d2omza2         283 GLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDISP-VSSLT-KLQRLFFA-NNK-------VSDV--S-SL  347 (384)
T ss_dssp             TCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCGG-GGGCT-TCCEEECC-SSC-------CCCC--G-GG
T ss_pred             ccccccccccccccccc-c-cccchhcccCeEECCCCCCCCCcc-cccCC-CCCEEECC-CCC-------CCCC--h-hH
Confidence            34444444444443322 1 235566777778888887776653 67777 78888887 776       5654  2 57


Q ss_pred             ccCCCCCeecCCCC-c-ccCccccccccchhhhhhhhhh
Q 039239          144 LHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQLMA  180 (323)
Q Consensus       144 ~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~l~~  180 (323)
                      +++++|++|++++| + .++|  +..+  ++|+.+++..
T Consensus       348 ~~l~~L~~L~l~~N~l~~l~~--l~~l--~~L~~L~L~~  382 (384)
T d2omza2         348 ANLTNINWLSAGHNQISDLTP--LANL--TRITQLGLND  382 (384)
T ss_dssp             GGCTTCCEEECCSSCCCBCGG--GTTC--TTCSEEECCC
T ss_pred             cCCCCCCEEECCCCcCCCChh--hccC--CCCCEeeCCC
Confidence            77888888888888 7 6653  4444  5555555443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.8e-11  Score=102.56  Aligned_cols=171  Identities=15%  Similarity=0.087  Sum_probs=103.2

Q ss_pred             CEEecCCCCCCcCCc-ccCCCCCCCEEeeeCCCCCccCCC-CcCCcc-hhh--hcCccccccccc-cccCCCCCCEEEee
Q 039239            1 MLDLSDCKSLKSLPA-EISNLESLKKLNLSGCSKLKRLPE-FSSAGN-IEE--ICGCKRLKSLPS-SICKLKSLKVLNLD   74 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~-~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l~-l~~--L~~~~~l~~lP~-~i~~L~~L~~L~Ls   74 (323)
                      +|+|++|+ ++.+|. .|.++++|++|++++|.....+|. .+..+. +..  +..++.+..++. .+.++++|++|+++
T Consensus        33 ~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~  111 (242)
T d1xwdc1          33 ELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  111 (242)
T ss_dssp             EEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEE
T ss_pred             EEECcCCc-CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence            48999998 456664 578899999999999988776654 223222 232  345666766654 47889999999999


Q ss_pred             CCCCCCCCCc-ccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCC-CCC----------------cc
Q 039239           75 GCSNIQKLPH-ELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQ-MGL----------------LL  135 (323)
Q Consensus        75 ~n~~~~~lp~-~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~-~~~----------------L~  135 (323)
                      +|.+...-+. .+..+..+..+..+++.+..++. .+..++..++.|+++ +|..... ...                ++
T Consensus       112 ~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~-~n~l~~i~~~~~~~~~l~~~~~l~~n~l~  190 (242)
T d1xwdc1         112 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN-KNGIQEIHNCAFNGTQLDELNLSDNNNLE  190 (242)
T ss_dssp             SCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC-SSCCCEECTTTTTTCCEEEEECTTCTTCC
T ss_pred             hhhhcccccccccccccccccccccccccccccccccccccccceeeecc-cccccccccccccchhhhccccccccccc
Confidence            9876543221 22333444444445555554432 223333245555555 4431110 000                44


Q ss_pred             eecCc-cccccCCCCCeecCCCC-c-ccCccccccccchhhhhhh
Q 039239          136 PITLS-IDGLHMTDLRHFDLSGN-F-KLDRKEVRGIFEDALQDIQ  177 (323)
Q Consensus       136 ~l~L~-~~l~~l~~L~~L~Ls~N-l-~lP~~~L~~L~~~sL~~l~  177 (323)
                      .+  | ..|.++++|++|++++| + .+|+..++.+  ..|+.++
T Consensus       191 ~l--~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~l~  231 (242)
T d1xwdc1         191 EL--PNDVFHGASGPVILDISRTRIHSLPSYGLENL--KKLRARS  231 (242)
T ss_dssp             CC--CTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC--CEEESSS
T ss_pred             cc--cHHHhcCCCCCCEEECCCCcCCccCHHHHcCC--cccccCc
Confidence            43  3 34688999999999999 8 8886555555  4444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=7.1e-11  Score=107.62  Aligned_cols=82  Identities=20%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCc
Q 039239           61 SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLS  140 (323)
Q Consensus        61 ~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~  140 (323)
                      .+..++++++|++++|++.+. + .+..+++|++|++++|.++.+| .+..++ +|++|+++ +|.       ++.+  +
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~-~L~~L~l~-~N~-------l~~l--~  367 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVS-SLANLT-NINWLSAG-HNQ-------ISDL--T  367 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCG-GGGGCT-TCCEEECC-SSC-------CCBC--G
T ss_pred             ccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCCh-hHcCCC-CCCEEECC-CCc-------CCCC--h
Confidence            467789999999999987664 3 3788999999999999999887 689999 99999999 888       7766  3


Q ss_pred             cccccCCCCCeecCCCC
Q 039239          141 IDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       141 ~~l~~l~~L~~L~Ls~N  157 (323)
                       .++++++|+.|+|++|
T Consensus       368 -~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         368 -PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GGTTCTTCSEEECCCE
T ss_pred             -hhccCCCCCEeeCCCC
Confidence             3889999999999987

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.3e-10  Score=97.52  Aligned_cols=132  Identities=16%  Similarity=0.263  Sum_probs=98.5

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhh--hcCccccccccccccCCCCCCEEEeeCCCC
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSN   78 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~   78 (323)
                      +|++++|++ ..+++ ++++++|++|++++|.. ..++.+.....++.  ++++. ...+ +.+..+++|+.|++++|.+
T Consensus        66 ~L~Ls~N~l-~~~~~-l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~~~-~~~~-~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          66 QINFSNNQL-TDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLFNNQ-ITDI-DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             EEECCSSCC-CCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CCCC-GGGTTCTTCSEEECCSSCC
T ss_pred             cCccccccc-cCccc-ccCCccccccccccccc-ccccccccccccccccccccc-cccc-cccchhhhhHHhhhhhhhh
Confidence            489999984 45555 88999999999999754 44554322222333  33433 3333 3478899999999999875


Q ss_pred             CCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCee
Q 039239           79 IQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHF  152 (323)
Q Consensus        79 ~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L  152 (323)
                      . .+ +.+..+++|++|++.+|.++.++ .+..++ +|+.|+++ +|+       ++.+   +.++++++|++|
T Consensus       141 ~-~~-~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~-~L~~L~ls-~N~-------i~~i---~~l~~L~~L~~L  199 (199)
T d2omxa2         141 S-DI-SALSGLTSLQQLNFSSNQVTDLK-PLANLT-TLERLDIS-SNK-------VSDI---SVLAKLTNLESL  199 (199)
T ss_dssp             C-CC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCT-TCCEEECC-SSC-------CCCC---GGGGGCTTCSEE
T ss_pred             c-cc-ccccccccccccccccccccCCc-cccCCC-CCCEEECC-CCC-------CCCC---ccccCCCCCCcC
Confidence            4 44 36889999999999999998886 488999 99999999 888       6665   357788888875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.10  E-value=1.8e-10  Score=98.37  Aligned_cols=142  Identities=22%  Similarity=0.325  Sum_probs=83.2

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhh--hcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEE--ICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~--L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      |++.+|. ++.++ .+.++++|++|++++|...+ ++++.....++.  +.+ +.++.++ .+.++++|+.+++++|...
T Consensus        46 L~l~~~~-i~~l~-~l~~l~~L~~L~ls~n~i~~-~~~l~~l~~l~~l~~~~-n~~~~i~-~l~~l~~L~~l~l~~~~~~  120 (227)
T d1h6ua2          46 LSAFGTG-VTTIE-GVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSG-NPLKNVS-AIAGLQSIKTLDLTSTQIT  120 (227)
T ss_dssp             EECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCS-CCCSCCG-GGTTCTTCCEEECTTSCCC
T ss_pred             EECCCCC-CCcch-hHhcCCCCcEeecCCceeec-ccccccccccccccccc-ccccccc-ccccccccccccccccccc
Confidence            6788887 45675 48899999999999986544 332222222222  222 2344444 3667777777777776654


Q ss_pred             CCCC--------------------cccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecC
Q 039239           80 QKLP--------------------HELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITL  139 (323)
Q Consensus        80 ~~lp--------------------~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L  139 (323)
                      +..+                    ..+..+++|++|++++|.+...+. +..++ +|+.|+++ +|+       ++.+  
T Consensus       121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~-~L~~L~Ls-~n~-------l~~l--  188 (227)
T d1h6ua2         121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLS-KLTTLKAD-DNK-------ISDI--  188 (227)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCT-TCCEEECC-SSC-------CCCC--
T ss_pred             ccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccc-cceecccC-CCc-------cCCC--
Confidence            3321                    123344556666666666554432 55555 66666666 555       4443  


Q ss_pred             ccccccCCCCCeecCCCC-c-ccC
Q 039239          140 SIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       140 ~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                       ..++++++|++|++++| + .+|
T Consensus       189 -~~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         189 -SPLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             -GGGGGCTTCCEEECTTSCCCBCG
T ss_pred             -hhhcCCCCCCEEECcCCcCCCCc
Confidence             23566667777777777 6 555

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.5e-10  Score=91.33  Aligned_cols=94  Identities=20%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             ccccccccccCCCCCCEEEeeCCCCCCCCC-cccCCCcccceeeccccccccC-ChhHHhcccccceeEccCCCCCCCCC
Q 039239           54 RLKSLPSSICKLKSLKVLNLDGCSNIQKLP-HELGNLEALNSLYAKGIATTEV-PSSVVRLNNKLYELSSDRSRRGDKQM  131 (323)
Q Consensus        54 ~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp-~~l~~l~~L~~L~L~~n~i~~l-P~~i~~l~~~L~~L~l~~~n~~~~~~  131 (323)
                      .+.++|..+..+++|+.|++++|+.+..++ ..|.++++|+.|++++|+|+.+ |..+..++ +|++|+++ +|+     
T Consensus        19 ~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~Ls-~N~-----   91 (156)
T d2ifga3          19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLS-FNA-----   91 (156)
T ss_dssp             CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECC-SSC-----
T ss_pred             CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc-cccceecc-CCC-----
Confidence            344555566667777777777665455444 4577777777777777777776 34566677 77777777 777     


Q ss_pred             CCcceecCccccccCCCCCeecCCCC-c
Q 039239          132 GLLLPITLSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       132 ~~L~~l~L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                        ++.+  +.......+|++|+|++| |
T Consensus        92 --l~~l--~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          92 --LESL--SWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             --CSCC--CSTTTCSCCCCEEECCSSCC
T ss_pred             --Cccc--ChhhhccccccccccCCCcc
Confidence              5655  433333346777888877 5

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.04  E-value=4.7e-10  Score=95.60  Aligned_cols=136  Identities=21%  Similarity=0.328  Sum_probs=94.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchh--hhcC---------------------ccccccc
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIE--EICG---------------------CKRLKSL   58 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~--~L~~---------------------~~~l~~l   58 (323)
                      |++++|++.+ +++ +..+++|+++++++|.. ..++.+.....++  .+++                     +..+.. 
T Consensus        68 L~ls~n~i~~-~~~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  143 (227)
T d1h6ua2          68 LELKDNQITD-LAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-  143 (227)
T ss_dssp             EECCSSCCCC-CGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-
T ss_pred             eecCCceeec-ccc-ccccccccccccccccc-cccccccccccccccccccccccccchhccccchhhhhchhhhhch-
Confidence            6788887443 433 67788888888887643 3444322111111  1111                     111112 


Q ss_pred             cccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239           59 PSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT  138 (323)
Q Consensus        59 P~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~  138 (323)
                      ...+.++++|+.|++++|.+...  ..++++++|++|++++|.++.+|. +..++ +|++|+++ +|+       ++.+ 
T Consensus       144 ~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~-~L~~L~Ls-~N~-------lt~i-  210 (227)
T d1h6ua2         144 ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP-LASLP-NLIEVHLK-NNQ-------ISDV-  210 (227)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-GGGCT-TCCEEECT-TSC-------CCBC-
T ss_pred             hhhhccccccccccccccccccc--hhhcccccceecccCCCccCCChh-hcCCC-CCCEEECc-CCc-------CCCC-
Confidence            22366788999999999876544  348899999999999999998865 88899 99999999 888       7776 


Q ss_pred             CccccccCCCCCeecCCC
Q 039239          139 LSIDGLHMTDLRHFDLSG  156 (323)
Q Consensus       139 L~~~l~~l~~L~~L~Ls~  156 (323)
                       + .++++++|+.|++++
T Consensus       211 -~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         211 -S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -G-GGTTCTTCCEEEEEE
T ss_pred             -c-ccccCCCCCEEEeeC
Confidence             3 478999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-09  Score=88.10  Aligned_cols=74  Identities=18%  Similarity=0.063  Sum_probs=43.9

Q ss_pred             Cccccccccc-cccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCC
Q 039239           51 GCKRLKSLPS-SICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        51 ~~~~l~~lP~-~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      +++.++.++. .|.++++|+.|+|++|.+...-|..|..+++|++|++++|+|+.+|..+.... +|+.|+++ +|.
T Consensus        40 ~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~-~Np  114 (156)
T d2ifga3          40 NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS-GNP  114 (156)
T ss_dssp             SCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC-SSC
T ss_pred             CCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccC-CCc
Confidence            3444555543 35566666666666665555445556666666666666666666665555555 56666666 554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.93  E-value=9.4e-12  Score=104.83  Aligned_cols=112  Identities=19%  Similarity=0.240  Sum_probs=62.7

Q ss_pred             cCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcc
Q 039239           12 SLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEA   91 (323)
Q Consensus        12 ~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~   91 (323)
                      .+|.+++.+++|++|+|++|                      .++.++ .+.++++|++|++++|.+ ..+|.....+.+
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n----------------------~I~~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~   94 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTN----------------------NIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADT   94 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEE----------------------EESCCC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHHH
T ss_pred             hhhhHHhcccccceeECccc----------------------CCCCcc-cccCCccccChhhccccc-cccccccccccc
Confidence            34445555666666666653                      233343 355566666666666643 344444444456


Q ss_pred             cceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC
Q 039239           92 LNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        92 L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      |++|++++|.++.++ .+..++ +|+.|+++ +|.       ++.+.--..+..+++|++|++++|
T Consensus        95 L~~L~l~~N~i~~l~-~~~~l~-~L~~L~L~-~N~-------i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          95 LEELWISYNQIASLS-GIEKLV-NLRVLYMS-NNK-------ITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             CCEEECSEEECCCHH-HHHHHH-HSSEEEES-EEE-------CCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccccccccc-cccccc-cccccccc-cch-------hccccccccccCCCccceeecCCC
Confidence            666666666666553 355666 66666666 555       333310123556666777777766

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.85  E-value=1.8e-11  Score=102.99  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=92.1

Q ss_pred             cccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCC
Q 039239           53 KRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMG  132 (323)
Q Consensus        53 ~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~  132 (323)
                      ..++.+|.++..+++|++|+|++|.+. .++ .++.+++|++|++++|.|+.+|.....++ +|+.|+++ +|.      
T Consensus        35 ~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~-~L~~L~l~-~N~------  104 (198)
T d1m9la_          35 PPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVAD-TLEELWIS-YNQ------  104 (198)
T ss_dssp             TTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHH-HCCEEECS-EEE------
T ss_pred             CchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccccccccccccc-cccccccc-ccc------
Confidence            456778888999999999999998755 564 68899999999999999999998777777 89999999 887      


Q ss_pred             CcceecCccccccCCCCCeecCCCC-c-ccCc-cccccccchhhhhhhhhhhh
Q 039239          133 LLLPITLSIDGLHMTDLRHFDLSGN-F-KLDR-KEVRGIFEDALQDIQLMAAA  182 (323)
Q Consensus       133 ~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~lP~-~~L~~L~~~sL~~l~l~~n~  182 (323)
                       ++.+   ..+.++++|+.|++++| + .++. ..+..+  ++|+.+++..|+
T Consensus       105 -i~~l---~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l--~~L~~L~L~~N~  151 (198)
T d1m9la_         105 -IASL---SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL--DKLEDLLLAGNP  151 (198)
T ss_dssp             -CCCH---HHHHHHHHSSEEEESEEECCCHHHHHHHTTT--TTCSEEEECSSH
T ss_pred             -cccc---ccccccccccccccccchhccccccccccCC--CccceeecCCCc
Confidence             6665   35788999999999999 7 6652 234444  677777776664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.2e-10  Score=100.40  Aligned_cols=147  Identities=20%  Similarity=0.238  Sum_probs=83.7

Q ss_pred             EEecCCCCCCc-CCcccCCCCCCCEEeeeCCCCCccCCCCcCC---cchhhhcCcccccc--ccccccCCCCCCEEEeeC
Q 039239            2 LDLSDCKSLKS-LPAEISNLESLKKLNLSGCSKLKRLPEFSSA---GNIEEICGCKRLKS--LPSSICKLKSLKVLNLDG   75 (323)
Q Consensus         2 L~Ls~n~~l~~-lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~---l~l~~L~~~~~l~~--lP~~i~~L~~L~~L~Ls~   75 (323)
                      ||+++|.+... ++..+.++++|++|+|++|......+..+..   ++..++++|+.++.  +..-..++++|++|++++
T Consensus        51 LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~  130 (284)
T d2astb2          51 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW  130 (284)
T ss_dssp             EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             EECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccc
Confidence            66777664432 3444566777888888777654433333222   22334556666542  233334567788888887


Q ss_pred             CCCCCC--CCcccCC-Ccccceeeccccc--cc--cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCC
Q 039239           76 CSNIQK--LPHELGN-LEALNSLYAKGIA--TT--EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTD  148 (323)
Q Consensus        76 n~~~~~--lp~~l~~-l~~L~~L~L~~n~--i~--~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~  148 (323)
                      |.....  +...+.. .++|+.|+++++.  ++  .+.....+++ +|++|+++ +|..      ++.-. ...+.++++
T Consensus       131 c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~-~L~~L~L~-~~~~------itd~~-~~~l~~~~~  201 (284)
T d2astb2         131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLS-DSVM------LKNDC-FQEFFQLNY  201 (284)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECT-TCTT------CCGGG-GGGGGGCTT
T ss_pred             ccccccccchhhhcccccccchhhhcccccccccccccccccccc-cccccccc-cccC------CCchh-hhhhcccCc
Confidence            754421  1122222 3567778777652  32  2334445667 78888887 6542      22111 245677888


Q ss_pred             CCeecCCCC
Q 039239          149 LRHFDLSGN  157 (323)
Q Consensus       149 L~~L~Ls~N  157 (323)
                      |++|++++|
T Consensus       202 L~~L~L~~C  210 (284)
T d2astb2         202 LQHLSLSRC  210 (284)
T ss_dssp             CCEEECTTC
T ss_pred             CCEEECCCC
Confidence            888998887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=6.5e-08  Score=82.39  Aligned_cols=100  Identities=16%  Similarity=0.230  Sum_probs=58.2

Q ss_pred             EecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCC-CcCCc---chhhhcCccccccccc-cccCCCCCCEEEeeCC-
Q 039239            3 DLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPE-FSSAG---NIEEICGCKRLKSLPS-SICKLKSLKVLNLDGC-   76 (323)
Q Consensus         3 ~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~-~~~~l---~l~~L~~~~~l~~lP~-~i~~L~~L~~L~Ls~n-   76 (323)
                      +.++.. +..+|..+.  +++++|+|++|. +..+|. .+..+   +..+++++.....+|. .+.++++++++.+..+ 
T Consensus        14 ~c~~~~-l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          14 LCQESK-VTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEESCS-CSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEeCCC-CCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence            444444 668887664  689999999964 445553 22222   2333445544444443 3556677777766654 


Q ss_pred             CCCCCCCcccCCCcccceeeccccccccCC
Q 039239           77 SNIQKLPHELGNLEALNSLYAKGIATTEVP  106 (323)
Q Consensus        77 ~~~~~lp~~l~~l~~L~~L~L~~n~i~~lP  106 (323)
                      ++....+..+.++++|+++++++|.+..+|
T Consensus        90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          90 NLLYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             TCCEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             cccccccccccccccccccccchhhhcccc
Confidence            333344455666777777777777765543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.7e-09  Score=94.27  Aligned_cols=148  Identities=20%  Similarity=0.274  Sum_probs=102.1

Q ss_pred             CEEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccC--CCC---cCCcchhhhcCcccccc--ccccccC-CCCCCEEE
Q 039239            1 MLDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRL--PEF---SSAGNIEEICGCKRLKS--LPSSICK-LKSLKVLN   72 (323)
Q Consensus         1 ~L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~--p~~---~~~l~l~~L~~~~~l~~--lP~~i~~-L~~L~~L~   72 (323)
                      +|+|++|......+..++.+++|++|++++|..++..  ...   ...++..++++|..+..  +...+.. .++|+.|+
T Consensus        75 ~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~  154 (284)
T d2astb2          75 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  154 (284)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             cccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhh
Confidence            3788898876677777888999999999999776531  111   12233344567766542  3333333 46899999


Q ss_pred             eeCCCC-CC--CCCcccCCCcccceeeccccc-cc-cCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCC
Q 039239           73 LDGCSN-IQ--KLPHELGNLEALNSLYAKGIA-TT-EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMT  147 (323)
Q Consensus        73 Ls~n~~-~~--~lp~~l~~l~~L~~L~L~~n~-i~-~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~  147 (323)
                      +++|.. ..  .+.....++++|++|++++|. ++ .....+..++ +|++|+++ +|..      ++.-. ...+++++
T Consensus       155 l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~-~L~~L~L~-~C~~------i~~~~-l~~L~~~~  225 (284)
T d2astb2         155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLS-RCYD------IIPET-LLELGEIP  225 (284)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECT-TCTT------CCGGG-GGGGGGCT
T ss_pred             hcccccccccccccccccccccccccccccccCCCchhhhhhcccC-cCCEEECC-CCCC------CChHH-HHHHhcCC
Confidence            998742 11  132334568899999999975 54 5667888999 99999999 8763      22221 13467899


Q ss_pred             CCCeecCCCC
Q 039239          148 DLRHFDLSGN  157 (323)
Q Consensus       148 ~L~~L~Ls~N  157 (323)
                      +|++|++++|
T Consensus       226 ~L~~L~l~~~  235 (284)
T d2astb2         226 TLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEeeeCC
Confidence            9999999998

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.54  E-value=1.8e-07  Score=83.11  Aligned_cols=134  Identities=22%  Similarity=0.201  Sum_probs=75.4

Q ss_pred             EEecCCCCCCcCCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC
Q 039239            2 LDLSDCKSLKSLPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK   81 (323)
Q Consensus         2 L~Ls~n~~l~~lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~   81 (323)
                      |||+++. ++.+|+.   +++|++|+|++| .+.++|+.++.++-+++.++ .+..++.-   .+.|++|++++|.+ ..
T Consensus        43 LdLs~~~-L~~lp~~---~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~~n~l-~~  112 (353)
T d1jl5a_          43 LELNNLG-LSSLPEL---PPHLESLVASCN-SLTELPELPQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQL-EK  112 (353)
T ss_dssp             EECTTSC-CSCCCSC---CTTCSEEECCSS-CCSSCCCCCTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCC-SS
T ss_pred             EEeCCCC-CCCCCCC---CCCCCEEECCCC-CCcccccchhhhhhhhhhhc-ccchhhhh---cccccccccccccc-cc
Confidence            6788776 5667763   467888888764 45566766555543333332 23333321   13467777776653 34


Q ss_pred             CCcccCCCcccceeeccccccccCChhHHhcccccceeEccCCCCCCCCCCCcceecCccccccCCCCCeecCCCC-c-c
Q 039239           82 LPHELGNLEALNSLYAKGIATTEVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPITLSIDGLHMTDLRHFDLSGN-F-K  159 (323)
Q Consensus        82 lp~~l~~l~~L~~L~L~~n~i~~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~L~~~l~~l~~L~~L~Ls~N-l-~  159 (323)
                      +|. ++.+++|++|+++++.+...|....    .+..+.+. .+..       ..   ...+..++.++.+++++| + .
T Consensus       113 lp~-~~~l~~L~~L~l~~~~~~~~~~~~~----~l~~l~~~-~~~~-------~~---~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         113 LPE-LQNSSFLKIIDVDNNSLKKLPDLPP----SLEFIAAG-NNQL-------EE---LPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCSCCCCCCT----TCCEEECC-SSCC-------SS---CCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccc-hhhhccceeeccccccccccccccc----cccchhhc-cccc-------cc---cccccccccceecccccccccc
Confidence            553 4666777777777776665554332    34444444 3221       11   134566777788888877 5 4


Q ss_pred             cC
Q 039239          160 LD  161 (323)
Q Consensus       160 lP  161 (323)
                      ++
T Consensus       177 ~~  178 (353)
T d1jl5a_         177 LP  178 (353)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.37  E-value=5.2e-07  Score=79.99  Aligned_cols=94  Identities=22%  Similarity=0.239  Sum_probs=55.4

Q ss_pred             CCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecccc
Q 039239           21 ESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAKGI  100 (323)
Q Consensus        21 ~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~~n  100 (323)
                      .++++|+|++|. ++.+|+....++.++++ ++.++++|..+   .+|+.|++++|.+. .+++.   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~-L~~lp~~~~~L~~L~Ls-~N~l~~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPELPPHLESLVAS-CNSLTELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCSCCTTCSEEECC-SSCCSSCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCC-CCCCCCCCCCCCEEECC-CCCCcccccch---hhhhhhhhhhcccc-hhhhh---cccccccccccc
Confidence            468899999864 45677655544444444 34566666543   45666666665432 33321   134666777777


Q ss_pred             ccccCChhHHhcccccceeEccCCCC
Q 039239          101 ATTEVPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus       101 ~i~~lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .+..+|. ++.++ +|+.|+++ ++.
T Consensus       109 ~l~~lp~-~~~l~-~L~~L~l~-~~~  131 (353)
T d1jl5a_         109 QLEKLPE-LQNSS-FLKIIDVD-NNS  131 (353)
T ss_dssp             CCSSCCC-CTTCT-TCCEEECC-SSC
T ss_pred             ccccccc-hhhhc-cceeeccc-ccc
Confidence            7666664 45566 67777666 554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=7.9e-07  Score=71.41  Aligned_cols=83  Identities=19%  Similarity=0.084  Sum_probs=56.0

Q ss_pred             ccCCCCCCEEEeeCCCCCCC--CCcccCCCcccceeeccccccccCCh-hHHhcccccceeEccCCCCCCCCCCCcceec
Q 039239           62 ICKLKSLKVLNLDGCSNIQK--LPHELGNLEALNSLYAKGIATTEVPS-SVVRLNNKLYELSSDRSRRGDKQMGLLLPIT  138 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~--lp~~l~~l~~L~~L~L~~n~i~~lP~-~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~  138 (323)
                      ..++++|++|+|++|.+...  ++..+..+++|+.|++++|.|+.+++ ...... .|+.|+++ +|.       +....
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~-~L~~L~L~-~Np-------l~~~~  131 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLD-GNS-------LSDTF  131 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTC-CCSSCCCT-TST-------TSSSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcc-ccceeecC-CCC-------cCcCc
Confidence            34688899999999876543  33456678899999999999988765 233344 67888888 776       32220


Q ss_pred             C------ccccccCCCCCeec
Q 039239          139 L------SIDGLHMTDLRHFD  153 (323)
Q Consensus       139 L------~~~l~~l~~L~~L~  153 (323)
                      -      ...+..+++|+.||
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence            0      01245677888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.2e-06  Score=77.23  Aligned_cols=88  Identities=23%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             cCCCCCCEEEeeCCCCCC----CCCcccCCCcccceeeccccccccC-----ChhHHhcccccceeEccCCCCCCCCCCC
Q 039239           63 CKLKSLKVLNLDGCSNIQ----KLPHELGNLEALNSLYAKGIATTEV-----PSSVVRLNNKLYELSSDRSRRGDKQMGL  133 (323)
Q Consensus        63 ~~L~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~~L~L~~n~i~~l-----P~~i~~l~~~L~~L~l~~~n~~~~~~~~  133 (323)
                      ..++++++|+|++|.+..    .+...+..+++|++|++++|.|+..     ...+.....+|+.|+++ +|.       
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~-~n~-------   95 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ-NCC-------   95 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT-TSC-------
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECC-CCC-------
Confidence            346778888888887652    3344567788888888888887521     11111111268888888 776       


Q ss_pred             cceec---CccccccCCCCCeecCCCC-c
Q 039239          134 LLPIT---LSIDGLHMTDLRHFDLSGN-F  158 (323)
Q Consensus       134 L~~l~---L~~~l~~l~~L~~L~Ls~N-l  158 (323)
                      ++...   ++..+..+++|++|++++| +
T Consensus        96 it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          96 LTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             ccccccccccchhhccccccccccccccc
Confidence            43322   1345667888888888888 5

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.52  E-value=1.1e-05  Score=64.81  Aligned_cols=115  Identities=17%  Similarity=0.218  Sum_probs=70.5

Q ss_pred             CCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCC----CCCcccCCCcccc
Q 039239           18 SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQ----KLPHELGNLEALN   93 (323)
Q Consensus        18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~----~lp~~l~~l~~L~   93 (323)
                      .+.++|+.|+|+++..++.                ..+..+-..+...++|+.|+|++|.+..    .+.+.+...+.|+
T Consensus        12 ~n~~~L~~L~L~~~~~i~~----------------~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~   75 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSK----------------ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLR   75 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCH----------------HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCC
T ss_pred             hCCCCCcEEEeCCCCCCCH----------------HHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhccccc
Confidence            3467888999987532221                1222334445667788999999887642    2223455567888


Q ss_pred             eeecccccccc-----CChhHHhcccccceeEccCCCCCCCCCCCcceec------CccccccCCCCCeecCCCC
Q 039239           94 SLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPIT------LSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        94 ~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l~------L~~~l~~l~~L~~L~Ls~N  157 (323)
                      +|++++|.++.     +-..+...+ .|++|+++ +|.       ...++      +...+...++|++|+++.+
T Consensus        76 ~L~L~~n~i~~~g~~~l~~aL~~n~-sL~~L~l~-~n~-------~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          76 VLNVESNFLTPELLARLLRSTLVTQ-SIVEFKAD-NQR-------QSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             EEECCSSBCCHHHHHHHHHHTTTTC-CCSEEECC-CCS-------SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ceeeehhhcchHHHHHHHHHHHhCC-cCCEEECC-CCc-------CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            99999988852     223444555 78888887 665       12111      1233455678888888766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.52  E-value=4.6e-06  Score=74.45  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             ccCCCCCCEEEeeCCCCCCC----CCcccCCCcccceeeccccccc
Q 039239           62 ICKLKSLKVLNLDGCSNIQK----LPHELGNLEALNSLYAKGIATT  103 (323)
Q Consensus        62 i~~L~~L~~L~Ls~n~~~~~----lp~~l~~l~~L~~L~L~~n~i~  103 (323)
                      +..+++|+.|++++|.+...    +...+..+++|++|++++|.|+
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            44555666666666554321    2234455566666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.9e-06  Score=75.34  Aligned_cols=107  Identities=19%  Similarity=0.159  Sum_probs=56.6

Q ss_pred             CEEecCCCCCCc-CCcccCCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCC
Q 039239            1 MLDLSDCKSLKS-LPAEISNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNI   79 (323)
Q Consensus         1 ~L~Ls~n~~l~~-lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~   79 (323)
                      .||++++++... +..-+..+++++.|+|++|....                 ..+..+...+..+++|++|+|++|.+.
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~-----------------~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE-----------------ARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH-----------------HHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCH-----------------HHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            378888876542 12223457888999999985321                 112233444455666666666665432


Q ss_pred             C----CCCcccC-CCcccceeecccccccc-----CChhHHhcccccceeEccCCCC
Q 039239           80 Q----KLPHELG-NLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRR  126 (323)
Q Consensus        80 ~----~lp~~l~-~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~  126 (323)
                      .    .+.+.+. ...+|++|++++|.++.     ++..+..++ +|++|+++ +|.
T Consensus        69 ~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~-~L~~L~L~-~N~  123 (460)
T d1z7xw1          69 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLS-DNL  123 (460)
T ss_dssp             HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCT-TCCEEECC-SSB
T ss_pred             hHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccc-cccccccc-ccc
Confidence            1    1112222 12356666666666542     233444455 66666666 443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=2.3e-05  Score=62.45  Aligned_cols=82  Identities=28%  Similarity=0.286  Sum_probs=53.2

Q ss_pred             CCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCCCCcccCCCcccceeecc
Q 039239           19 NLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQKLPHELGNLEALNSLYAK   98 (323)
Q Consensus        19 ~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~L~   98 (323)
                      .+++|++|+|++|..                   ..+..++..+..+++|+.|++++|.+...-+-......+|+.|+++
T Consensus        63 ~~~~L~~L~Ls~N~i-------------------~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~  123 (162)
T d1koha1          63 NIPELLSLNLSNNRL-------------------YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD  123 (162)
T ss_dssp             HCTTCCCCCCCSSCC-------------------CCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCT
T ss_pred             hCCCCCEeeCCCccc-------------------cCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecC
Confidence            466677777777532                   1222344556788999999999987654322122344579999999


Q ss_pred             ccccccCCh--------hHHhcccccceeE
Q 039239           99 GIATTEVPS--------SVVRLNNKLYELS  120 (323)
Q Consensus        99 ~n~i~~lP~--------~i~~l~~~L~~L~  120 (323)
                      +|.+.....        .+..+| +|+.||
T Consensus       124 ~Npl~~~~~~~~~y~~~i~~~~P-~L~~LD  152 (162)
T d1koha1         124 GNSLSDTFRDQSTYISAIRERFP-KLLRLD  152 (162)
T ss_dssp             TSTTSSSSSSHHHHHHHHHTTST-TCCEET
T ss_pred             CCCcCcCcccchhHHHHHHHHCC-CCCEEC
Confidence            999864322        245677 888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.00  E-value=9.8e-05  Score=65.48  Aligned_cols=147  Identities=15%  Similarity=0.010  Sum_probs=88.9

Q ss_pred             EEecCCCCCCc----CCcccCCCCCCCEEeeeCCCCCccCCCCc----------------CCcchhhhcCcc----cccc
Q 039239            2 LDLSDCKSLKS----LPAEISNLESLKKLNLSGCSKLKRLPEFS----------------SAGNIEEICGCK----RLKS   57 (323)
Q Consensus         2 L~Ls~n~~l~~----lP~~i~~L~~L~~L~Ls~c~~l~~~p~~~----------------~~l~l~~L~~~~----~l~~   57 (323)
                      |+|++|.+...    +...+...++|+.|++++|.....-...+                ..++...+.++.    ....
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~  177 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  177 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc
Confidence            78888875442    34445678999999999986432110000                000011112111    1123


Q ss_pred             ccccccCCCCCCEEEeeCCCCCCC-----CCcccCCCcccceeecccccccc-----CChhHHhcccccceeEccCCCCC
Q 039239           58 LPSSICKLKSLKVLNLDGCSNIQK-----LPHELGNLEALNSLYAKGIATTE-----VPSSVVRLNNKLYELSSDRSRRG  127 (323)
Q Consensus        58 lP~~i~~L~~L~~L~Ls~n~~~~~-----lp~~l~~l~~L~~L~L~~n~i~~-----lP~~i~~l~~~L~~L~l~~~n~~  127 (323)
                      +...+...++|+.|++++|.+...     +...+..+++|+.|++++|.++.     +...+...+ +|++|+++ +|. 
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~-~L~~L~Ls-~n~-  254 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLN-DCL-  254 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECT-TCC-
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccc-cchhhhhh-cCc-
Confidence            444456678899999999876532     33456778889999999998742     445566777 89999998 787 


Q ss_pred             CCCCCCcceecC---ccccc--cCCCCCeecCCCC
Q 039239          128 DKQMGLLLPITL---SIDGL--HMTDLRHFDLSGN  157 (323)
Q Consensus       128 ~~~~~~L~~l~L---~~~l~--~l~~L~~L~Ls~N  157 (323)
                            +..-..   ...+.  ..+.|++|++++|
T Consensus       255 ------i~~~g~~~l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         255 ------LSARGAAAVVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             ------CCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred             ------cCchhhHHHHHHhhhccCCCCCEEECCCC
Confidence                  332211   12222  2356888888888

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.65  E-value=0.00012  Score=58.08  Aligned_cols=117  Identities=18%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             CCCCCCCEEeeeCCCCCccCCCCcCCcchhhhcCccccccccccccCCCCCCEEEeeCCCCCCC----CCcccCCCcccc
Q 039239           18 SNLESLKKLNLSGCSKLKRLPEFSSAGNIEEICGCKRLKSLPSSICKLKSLKVLNLDGCSNIQK----LPHELGNLEALN   93 (323)
Q Consensus        18 ~~L~~L~~L~Ls~c~~l~~~p~~~~~l~l~~L~~~~~l~~lP~~i~~L~~L~~L~Ls~n~~~~~----lp~~l~~l~~L~   93 (323)
                      .+.++|++|+|+++..++.                ..+..+-..+...++|+.|++++|.+...    +-+.+...+.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~----------------~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~   77 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPV----------------PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK   77 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCH----------------HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCH----------------HHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccch
Confidence            4568888888887432221                12223444556678888999998865432    223455667888


Q ss_pred             eeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCCCccee---cCccccccCCCCCeecCCCC
Q 039239           94 SLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMGLLLPI---TLSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus        94 ~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~L~~l---~L~~~l~~l~~L~~L~Ls~N  157 (323)
                      .+++++|.++     .+-..+...+ +|+.++++ .+...     +..-   .+...+...+.|++|+++.+
T Consensus        78 ~l~l~~~~~~~~g~~~l~~~l~~~~-~L~~l~L~-l~~n~-----i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          78 SLNVESNFISGSGILALVEALQSNT-SLIELRID-NQSQP-----LGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             EEECCSSCCCHHHHHHHHHGGGGCS-SCCEEECC-CCSSC-----CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hhhhccccccchhHHHHHHHHHhCc-cccEEeec-cCCCc-----CcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            8888888874     2334555666 77776665 22210     1110   01234557788888888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.49  E-value=0.00069  Score=53.72  Aligned_cols=89  Identities=18%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             CCCCCCEEEeeCCCCCCC-----CCcccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCCC
Q 039239           64 KLKSLKVLNLDGCSNIQK-----LPHELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMGL  133 (323)
Q Consensus        64 ~L~~L~~L~Ls~n~~~~~-----lp~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~~  133 (323)
                      +.++|+.|+|++++..+.     +-..+...++|++|++++|.++     .+...+...+ .|++|+++ +|.       
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~-~L~~L~L~-~n~-------   83 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVE-SNF-------   83 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECC-SSB-------
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcc-cccceeee-hhh-------
Confidence            457899999997543322     2245777889999999999985     2334566667 89999999 776       


Q ss_pred             cceecC---ccccccCCCCCeecCCCC-c-ccC
Q 039239          134 LLPITL---SIDGLHMTDLRHFDLSGN-F-KLD  161 (323)
Q Consensus       134 L~~l~L---~~~l~~l~~L~~L~Ls~N-l-~lP  161 (323)
                      +..-.+   -..+...++|++|++++| . .+-
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g  116 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLG  116 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCCcCCCcc
Confidence            332211   245677789999999998 5 443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.52  E-value=0.025  Score=43.89  Aligned_cols=86  Identities=16%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             cCCCCCCEEEeeCCCCCCC-----CCcccCCCcccceeeccccccc-----cCChhHHhcccccceeEccCCCCCCCCCC
Q 039239           63 CKLKSLKVLNLDGCSNIQK-----LPHELGNLEALNSLYAKGIATT-----EVPSSVVRLNNKLYELSSDRSRRGDKQMG  132 (323)
Q Consensus        63 ~~L~~L~~L~Ls~n~~~~~-----lp~~l~~l~~L~~L~L~~n~i~-----~lP~~i~~l~~~L~~L~l~~~n~~~~~~~  132 (323)
                      .+.++|++|+++++...+.     +-..+...++|++|++++|.++     .+-..+...+ .++.++++ +|.      
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~-~l~~l~l~-~~~------   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVE-SNF------   85 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECC-SSC------
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcc-cchhhhhc-ccc------
Confidence            4568999999998543321     2244667889999999999985     2334566667 89999998 776      


Q ss_pred             Ccceec---CccccccCCCCCeecCCCC
Q 039239          133 LLLPIT---LSIDGLHMTDLRHFDLSGN  157 (323)
Q Consensus       133 ~L~~l~---L~~~l~~l~~L~~L~Ls~N  157 (323)
                       +..-.   +...+...++|+.++|+.+
T Consensus        86 -~~~~g~~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          86 -ISGSGILALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             -CCHHHHHHHHHGGGGCSSCCEEECCCC
T ss_pred             -ccchhHHHHHHHHHhCccccEEeeccC
Confidence             22111   1245677889998666543