Citrus Sinensis ID: 039243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRRRRHRHRM
Secondary Structure (PSIPRED)
cccccccccccccHHHHccccccccccccccccccccHHHHcccccHHHHcccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccccccHHHccHHHcccccEEEcccccHcccccccccccccccccccccccHEEEEEccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHccccc
Coil and Loop (DISEMBL)
iilldnnfvgeiptsIASLKGLQtlnlsnnnlrgyipltlsnltviesldlssnkltgqIPQQLAELtslaffdvshnhlrgaipqgtqfstfandwfagnpglcgeplsgkcgnseaspaeddppsefVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFrlqpesngrrrrhrhrm
Flexible Loop (DISEMBL)
iilldnnfvgeiPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKtfrlqpesngrrrrhrhrm
Low Complexity Region (SEG)
IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGrrrrhrhrM
Disordered region (IsUnstruct)
*ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCG**********************FVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRL***************
Disordered Region (DISOPRED)
IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEP*************************GWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESN**********
Disordered Region (DISEMBL)
IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSG**************PSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQP*************
Disordered Region (DISPRO)
IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCG****************LAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRR*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRRRRHRHRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.870	0.190	0.395	4e-26
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.632	0.106	0.478	3e-21
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.616	0.111	0.486	1e-20
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.789	0.200	0.430	2e-20
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.837	0.123	0.381	4e-20
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.827	0.122	0.351	4e-19
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.605	0.093	0.469	3e-18
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.589	0.095	0.445	4e-18
C0LGP9	784	Probable leucine-rich rep	no	no	0.805	0.190	0.363	8e-18
Q9ASS4	620	Probably inactive leucine	no	no	0.740	0.220	0.371	2e-17

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 91/167 (54%), Gaps = 6/167 (3%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N   G IP S+  LK L+ LNLS N     IP  L+NLT +E+LD+S NKL+GQIPQ LA
Sbjct: 668 NKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLA 727

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDP 125
            L+ L++ + SHN L+G +P+GTQF       F  NPGL G  L   C ++ A       
Sbjct: 728 ALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTSQL 785

Query: 126 PSEFVLA----FGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTF 168
           P +   A    F W      Y  G + G+V+G+ + +  +EW  + F
Sbjct: 786 PEDLSEAEENMFNWVAAAIAYGPGVLCGLVIGHFYTSHNHEWFTEKF 832

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 70/119 (58%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I +  NN  G IP  +  LK L  L L  NN  G IP  LSNLT +E LDLS+N L+G+I
Sbjct: 586 IYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRI 645

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEAS 119
           P  L  L  L++F+V++N L G IP GTQF TF    F GNP LCG  L   C  ++ S
Sbjct: 646 PWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLTSCDPTQHS 704

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 68/115 (59%), Gaps = 1/115 (0%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N+  G I      L+ L  LNL NNNL G IP  LS +T +E LDLS N L+G IP  L 
Sbjct: 543 NSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLV 602

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASP 120
           +L+ L+ F V++N L G IP G QF TF N  F GN GLCGE  S  C  ++ SP
Sbjct: 603 KLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHAS-PCHITDQSP 656

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 79/151 (52%), Gaps = 5/151 (3%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I +  NN  G IP  +  LK L  L L  NNL G IP  LSNLT +E LDLS+N L+G I
Sbjct: 581 IYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLDLSNNNLSGSI 640

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASP 120
           P  L  L  L++F+V++N L G IP   QF TF    F GNP LCG  L   C  + A  
Sbjct: 641 PWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLLTSCKPTRA-- 698

Query: 121 AEDDPPSEFVLAFGWKIVLAGYASGTIIGVV 151
            E+D   E    F   I +  + S   I VV
Sbjct: 699 KEND---ELNRTFLMGIAIGYFLSFVSILVV 726

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 10/165 (6%)

Query: 6   NNFVGEIPTSIASLKGLQT-LNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
           N   GEIP  I  L+ LQ+ L+LS NN  G IP T+S L  +ESLDLS N+L G++P Q+
Sbjct: 754 NALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQI 813

Query: 65  AELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDD 124
            ++ SL + ++S+N+L G + +  QFS +  D F GN GLCG PLS  C  + +      
Sbjct: 814 GDMKSLGYLNLSYNNLEGKLKK--QFSRWQADAFVGNAGLCGSPLS-HCNRAGSKNQRSL 870

Query: 125 PPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFR 169
            P   V      I+ A  +   I  +VL  I   ++   L K  R
Sbjct: 871 SPKTVV------IISAISSLAAIALMVLVIILFFKQNHDLFKKVR 909

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 97/165 (58%), Gaps = 12/165 (7%)

Query: 6   NNFVGEIPTSIASLKGLQT-LNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
           N+  GEIP  I  L+ LQ+ L+LS NN  G IP T+  L+ +E+LDLS N+LTG++P  +
Sbjct: 753 NSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSV 812

Query: 65  AELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDD 124
            ++ SL + +VS N+L G + +  QFS +  D F GN GLCG PLS +C    ++  +  
Sbjct: 813 GDMKSLGYLNVSFNNLGGKLKK--QFSRWPADSFLGNTGLCGSPLS-RCNRVRSNNKQQG 869

Query: 125 PPSEFVLAFGWKIVLAGYASGTIIGVVLGYI--FCTRKYEWLIKT 167
             +  V      ++++  ++ T IG+++  I  F  +++++  K 
Sbjct: 870 LSARSV------VIISAISALTAIGLMILVIALFFKQRHDFFKKV 908

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N   G IP  I S+  L  LNL +N++ G IP  + +L  +  LDLSSNKL G+IPQ ++
Sbjct: 664 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 723

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEA 118
            LT L   D+S+N+L G IP+  QF TF    F  NPGLCG PL  +C  S A
Sbjct: 724 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 775

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N   G+IP  I  +  LQ L LS+N L G IP T+  L  +   D S N+L GQIP+  +
Sbjct: 621 NQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFS 680

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGN 115
            L+ L   D+S+N L G IPQ  Q ST     +A NPGLCG PL  +C N
Sbjct: 681 NLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNPGLCGVPLP-ECKN 729

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 89/154 (57%), Gaps = 5/154 (3%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N   G +P+ ++ L  L+ +++S N++ G+IP TL N++ +  LDLS NKLTG+IP  ++
Sbjct: 280 NRIRGTLPSELSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPISIS 339

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFS-TFANDWFAGNPGLCGEPLSGKCGN-SEASPAED 123
           +L SL FF+VS+N+L G +P  T  S  F +  F GN  LCG  +S  C      SP ++
Sbjct: 340 DLESLNFFNVSYNNLSGPVP--TLLSQKFNSSSFVGNSLLCGYSVSTPCPTLPSPSPEKE 397

Query: 124 DPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFC 157
             PS   L+    I+L    +  I+ ++L  + C
Sbjct: 398 RKPSHRNLSTK-DIILIASGALLIVMLILVCVLC 430

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ASS4|Y5838_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 19/156 (12%)

Query: 6   NNFVGEIPTSIASLKGLQT-LNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
           NNF G +P +I++L  L T L+LS N+  G IP+ +SN+T + +L L  N+ TG +P QL
Sbjct: 110 NNFSGPLPANISTLIPLVTILDLSYNSFSGEIPMLISNITFLNTLMLQHNQFTGTLPPQL 169

Query: 65  AELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDD 124
           A+L  L  F VS N L G IP   Q   F  + FA N  LCG+PL   C ++ +S     
Sbjct: 170 AQLGRLKTFSVSDNRLVGPIPNFNQTLQFKQELFANNLDLCGKPLD-DCKSASSSR---- 224

Query: 125 PPSEFVLAFGWKIVLAGY----ASGTIIGVVLGYIF 156
                    G  +++A      A+  ++GVVL + F
Sbjct: 225 ---------GKVVIIAAVGGLTAAALVVGVVLFFYF 251

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
359485822	993	PREDICTED: receptor-like protein 12-like	0.994	0.185	0.545	8e-47
359485824	973	PREDICTED: receptor-like protein 12-like	0.929	0.176	0.555	1e-46
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.929	0.100	0.543	3e-46
224140513	947	predicted protein [Populus trichocarpa]	0.994	0.194	0.540	4e-46
359490156	886	PREDICTED: receptor-like protein 12-like	0.951	0.198	0.550	4e-46
224140505	993	predicted protein [Populus trichocarpa]	0.994	0.185	0.529	5e-46
297745044	813	unnamed protein product [Vitis vinifera]	0.972	0.221	0.538	1e-45
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.924	0.088	0.513	2e-45
147866761	859	hypothetical protein VITISV_021527 [Viti	0.870	0.187	0.580	3e-45
224140511	894	predicted protein [Populus trichocarpa]	0.994	0.205	0.526	9e-45

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  191 bits (486), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/185 (54%), Positives = 123/185 (66%), Gaps = 1/185 (0%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I L  N F GEIP SI +  GL+ LNLSNN L G IP +L+NLT++E+LDLS NKL+ +I
Sbjct: 808 IDLSSNRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLANLTLLEALDLSQNKLSREI 867

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASP 120
           PQQL +LT LAFF+VSHNHL G IPQG QF+TF+   F GNPGLCG PLS  CG+SE SP
Sbjct: 868 PQQLVQLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGNPGLCGSPLSRACGSSEQSP 927

Query: 121 AEDDPPSEFVLA-FGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRRR 179
                  +   + F WK VL G  SG +IGV +GY   + K+EW +KTF  Q     R+ 
Sbjct: 928 PTPSSSKQGSTSEFDWKFVLMGCGSGLVIGVSIGYCLTSWKHEWFVKTFGKQHTKWTRKE 987

Query: 180 RHRHR 184
           R  HR
Sbjct: 988 RRGHR 992

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/180 (55%), Positives = 120/180 (66%), Gaps = 8/180 (4%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           NNF G+IPTSI SLKG+  LNL  N+L G+IP +L NLT +ESLDLS NKL+G+IP QL 
Sbjct: 793 NNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLT 852

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDP 125
            LT L FF+VSHNHL G IPQG QF+TF N  F GN GLCG PLS +CG+SEA P     
Sbjct: 853 RLTFLEFFNVSHNHLTGHIPQGKQFATFENASFDGNLGLCGSPLSRECGSSEALPPTSSS 912

Query: 126 PSE-FVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRRRRHRHR 184
             +     F WKIVL GY SG +IGV +GY   + K+EW +KT        G+R+R   R
Sbjct: 913 SKQGSTTKFDWKIVLMGYGSGLLIGVSIGYCLTSWKHEWFVKTI-------GKRQRKWTR 965

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 122/184 (66%), Gaps = 12/184 (6%)

Query: 6    NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
            N F GEIPTSI +LKGL  LN S N+L G IP +L NLT +E+LDLS N L G+IPQQL 
Sbjct: 1542 NKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTELEALDLSQNNLLGEIPQQLT 1601

Query: 66   ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGN-SEASP---- 120
            E+T L FF+VSHN+L G IPQ  QF TF +D + GNPGLCG PL  KCGN  +ASP    
Sbjct: 1602 EMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLCGNPLIRKCGNPKQASPQPST 1661

Query: 121  AEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRRRR 180
            +E     E    F  K+VL GY S  + GV++GYIF TRK+EW +KTF       GRR++
Sbjct: 1662 SEQGQDLEPASXFDRKVVLMGYXSXLVFGVIIGYIFTTRKHEWFVKTF-------GRRQQ 1714

Query: 181  HRHR 184
             + R
Sbjct: 1715 QQER 1718

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 128/187 (68%), Gaps = 3/187 (1%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I L  N F G IP  +  LK L  LNLSNN L G IP +LSNL  +E+LDLS NKL+G+I
Sbjct: 759 IDLSRNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLSNLKKLEALDLSQNKLSGEI 818

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNS--EA 118
           P QLA+LT LA F+VSHN L G IP+G QF TF N  F  NP LCGEPLS +CGN+  ++
Sbjct: 819 PVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDANPALCGEPLSKECGNNGEDS 878

Query: 119 SP-AEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGR 177
            P A++D  S + L FGWK+V+ GYASG +IGV+LG    TRKYEWL+K +  + ++ G+
Sbjct: 879 LPAAKEDEGSGYQLEFGWKVVVIGYASGLVIGVILGCAMNTRKYEWLVKNYFARRQNKGQ 938

Query: 178 RRRHRHR 184
             + R R
Sbjct: 939 DLKTRLR 945

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/178 (55%), Positives = 120/178 (67%), Gaps = 2/178 (1%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           NNF G+IPTSI +L G   LNL +NNL G+IP +L +LT +ESLDLS N+L+G+IP QL 
Sbjct: 707 NNFKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLSGEIPLQLT 766

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEAS-PAEDD 124
            +T LAFF+VSHNHL G IPQG QF+TF N  F GN GLCG PLS  CG+SEAS P    
Sbjct: 767 RITFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSEASPPTSSS 826

Query: 125 PPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTF-RLQPESNGRRRRH 181
                   F WK VL GY SG +IGV +GY   + K+EW +KTF + Q +   + RRH
Sbjct: 827 SKQGSTSEFDWKFVLMGYGSGLVIGVSIGYYLTSWKHEWFVKTFGKRQRKWTRKERRH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/187 (52%), Positives = 127/187 (67%), Gaps = 3/187 (1%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I L  N F G IP  +  LK L  LNLSNN L G IP +LSNL  +E+LDLS NKL+G+I
Sbjct: 806 IDLSSNGFEGGIPEVLGDLKELHLLNLSNNFLSGGIPPSLSNLKELEALDLSQNKLSGEI 865

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEAS- 119
           P +LA+LT L  F+VSHN L G IP+G QF TF N  F  NPGLCGEPLS +CGN E S 
Sbjct: 866 PVKLAQLTFLEVFNVSHNFLSGPIPRGNQFGTFENTSFDANPGLCGEPLSKECGNDEDSL 925

Query: 120 -PAEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRR 178
             A++D  S + L FGWK+V+ GYASG + GV++G +  TRKYEW++K +  + ++ G+ 
Sbjct: 926 PAAKEDEGSGYPLEFGWKVVVVGYASGVVNGVIIGCVMNTRKYEWVVKNYFARRQNKGQN 985

Query: 179 RRHR-HR 184
            + R HR
Sbjct: 986 LKTRLHR 992

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745044|emb|CBI38636.3| unnamed protein product [Vitis vinifera]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 123/182 (67%), Gaps = 2/182 (1%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           NNF G+IPTSI +LKGL  LNL  NNL G+I  +L +LT +ESLDLS N+L+G+IP QL 
Sbjct: 586 NNFKGQIPTSIGNLKGLHLLNLGGNNLTGHISSSLGDLTQLESLDLSQNQLSGEIPLQLT 645

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEAS-PAEDD 124
            +T LAFF+VS+NHL G IPQG QF+TF++  F GNPGLCG PLS  CG+SEAS P    
Sbjct: 646 RITFLAFFNVSNNHLSGPIPQGKQFATFSSASFDGNPGLCGSPLSRACGSSEASPPTSSS 705

Query: 125 PPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTF-RLQPESNGRRRRHRH 183
                   F WK VL GY SG +IGV +GY   + K+EW +KTF + Q +   + RR   
Sbjct: 706 SKQGSTSEFDWKFVLMGYGSGLVIGVSIGYCLTSWKHEWFVKTFGKRQRKWTRKERRGAQ 765

Query: 184 RM 185
           R+
Sbjct: 766 RL 767

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 124/187 (66%), Gaps = 16/187 (8%)

Query: 1    IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
            I L  N F+GEIP SI  L+GL  LN+S+N+L G+IP  L NL  +E+LDLS N L+G+I
Sbjct: 1745 IDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGHIPSFLGNLAQLEALDLSQNNLSGEI 1804

Query: 61   PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASP 120
            PQQL  +T L FF+VSHNHL G IPQG QF+TF ND + GNPGLCG PLS +CGNS+++ 
Sbjct: 1805 PQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQNDSYEGNPGLCGNPLSKECGNSKSTA 1864

Query: 121  AEDDPPS-------EFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPE 173
            +   PP+       E        IVL GY SG ++G+ +GY   TRK+EW +KTF     
Sbjct: 1865 S--SPPTYKHGGDLESGRKVELMIVLMGYGSGLVVGMAIGYTLTTRKHEWFVKTF----- 1917

Query: 174  SNGRRRR 180
              G+R+R
Sbjct: 1918 --GKRQR 1922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866761|emb|CAN80989.1| hypothetical protein VITISV_021527 [Vitis vinifera]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 115/162 (70%), Gaps = 1/162 (0%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           NNF G+IPTSI +LKGL  LNL  NN+ G+IP +L NLT +ESLDLS NKL+G+IP QL 
Sbjct: 525 NNFKGQIPTSIGNLKGLHLLNLGRNNITGHIPSSLMNLTQMESLDLSQNKLSGEIPWQLT 584

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDP 125
            +T LAFF+VS+NHL G IPQG QF+TF N  F GNPGLCG PLS  CG+SEASP+    
Sbjct: 585 RMTFLAFFNVSNNHLTGPIPQGKQFATFPNTSFDGNPGLCGSPLSRACGSSEASPSTPSS 644

Query: 126 PSEFVLA-FGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIK 166
             +   + F WK VL GY SG +IGV +GY   + K++W  K
Sbjct: 645 SKQGSTSEFDWKFVLMGYGSGLVIGVSIGYCLTSWKHKWFPK 686

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140511|ref|XP_002323626.1| predicted protein [Populus trichocarpa] gi|222868256|gb|EEF05387.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (469), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 98/186 (52%), Positives = 126/186 (67%), Gaps = 2/186 (1%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I L  N F G IP  +  LK L  LNLSNN L G IP +LSNL  +E+LDLS NKL+G+I
Sbjct: 707 IDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGRIPPSLSNLKELEALDLSHNKLSGEI 766

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNS-EAS 119
           P QLA+LT L  F+VSHN L G IP+G QF  F +  F  N GLCGEPLS KCGN  +  
Sbjct: 767 PVQLAQLTFLEIFNVSHNFLSGPIPRGNQFGAFDSTSFDANSGLCGEPLSKKCGNDVDPL 826

Query: 120 PA-EDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESNGRR 178
           PA E+D  S + L FGWK+V+ GYA+G +IGV+LG +  TRKYEW++K +  + ++ G+ 
Sbjct: 827 PAPEEDGGSGYPLEFGWKVVVIGYATGLLIGVILGCVMNTRKYEWVVKNYFARWQNKGQH 886

Query: 179 RRHRHR 184
            ++R R
Sbjct: 887 LKNRLR 892

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.870	0.201	0.462	3.2e-33
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.864	0.271	0.459	7.3e-33
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.891	0.185	0.467	1.1e-32
TAIR|locus:2086974	881	RLP41 "AT3G25010" [Arabidopsis	0.875	0.183	0.485	1.8e-32
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.854	0.195	0.469	2.4e-32
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.945	0.171	0.422	3.1e-32
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.886	0.185	0.461	4.9e-32
TAIR|locus:2040035	671	RLP20 "receptor like protein 2	0.870	0.239	0.451	7.8e-32
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.864	0.179	0.453	5.9e-31
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.854	0.182	0.442	7e-31

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 75/162 (46%), Positives = 100/162 (61%)

Query:     6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
             N   G+IP SI  LK L  LNLSNN   G+IP++L+N+T +ESLDLS N+L+G IP++L 
Sbjct:   602 NKLEGQIPESIGLLKELIALNLSNNAFTGHIPMSLANVTELESLDLSRNQLSGNIPRELG 661

Query:    66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEAS-PAEDD 124
              L+ LA+  V+HN L+G IPQG QFS  A   F GN GLCG PL G C       P E+D
Sbjct:   662 SLSFLAYISVAHNQLKGEIPQGPQFSGQAESSFEGNVGLCGLPLQGSCVAPPTKYPKEED 721

Query:   125 PPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIK 166
                E      WK V  GY  G ++G+V+ ++  + K +W +K
Sbjct:   722 EEEEEDEVIEWKAVFFGYWPGLLLGLVMAHVIASFKPKWFVK 763

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 7.3e-33, P = 7.3e-33
 Identities = 74/161 (45%), Positives = 95/161 (59%)

Query:     6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
             N   GEIP SI  LK L  LNLSNN+  G+IP++ +N+T +ESLDLS NKL+G+IPQ+L 
Sbjct:   417 NKLEGEIPESIGLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELG 476

Query:    66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDP 125
              L+ LA+ DVS N L G IPQGTQ        F GN GLCG PL   C   +A P+  +P
Sbjct:   477 RLSYLAYIDVSDNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDA-PSTQEP 535

Query:   126 PSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIK 166
               E      W+    GY  G + G+ +G++    K  W IK
Sbjct:   536 EEEEEEILEWRAAAIGYGPGVLFGLAIGHVVALYKPGWFIK 576

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 79/169 (46%), Positives = 99/169 (58%)

Query:     1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
             I L  N   GEIP S+  LK L  LNLSNN   G+IPL+L+NL  IESLDLSSN+L+G I
Sbjct:   705 IDLSGNRLEGEIPESLGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTI 764

Query:    61 PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASP 120
             P  L  L+ LA+ +VSHN L G IPQGTQ +      F GN GLCG PL   C  + A P
Sbjct:   765 PNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNAPP 824

Query:   121 A----EDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLI 165
             A    E++   E      WK V  GY  G ++G+ +  +  + K EWL+
Sbjct:   825 AQKPKEEEEAEEDEQELNWKAVAIGYGVGVLLGLAIAQLIASYKPEWLV 873

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086974 RLP41 "AT3G25010" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 82/169 (48%), Positives = 101/169 (59%)

Query:     1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
             I L  N   GEIP SI  LK L  LNLSNN   G+IPL+L+NL  IESLDLSSN+L+G I
Sbjct:   706 IDLSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLVKIESLDLSSNQLSGTI 765

Query:    61 PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASP 120
             P  L  L+ LA+ +VSHN L G IPQGTQ +      F GN GLCG PL  +C  + A P
Sbjct:   766 PNGLGTLSFLAYVNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQQRCFGTNAPP 825

Query:   121 A-----EDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWL 164
             A     E+D   E VL   W+ V  GY  G ++G+ +  +  + K EWL
Sbjct:   826 AHQFKEEEDEEQEQVL--NWEGVAIGYGVGVLLGLAIAQLIASYKPEWL 872

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.4e-32, P = 2.4e-32
 Identities = 76/162 (46%), Positives = 101/162 (62%)

Query:     6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
             N   G+IP SI  LK L  LNLSNN   G+IPL+L+N+T +ESLDLS N+L+G IP  L 
Sbjct:   612 NKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSRNQLSGTIPNGLK 671

Query:    66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKC-GNSEASPAEDD 124
              L+ LA+  V+HN L G IPQGTQ +  +   F GN GLCG PL G C       P E+D
Sbjct:   672 TLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSCFAPPTPQPKEED 731

Query:   125 PPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIK 166
                E VL   WK V+ GY  G ++G+++ ++  + K +WL+K
Sbjct:   732 EDEE-VL--NWKAVVIGYWPGLLLGLIMAHVIASFKPKWLVK 770

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 3.1e-32, P = 3.1e-32
 Identities = 76/180 (42%), Positives = 109/180 (60%)

Query:     1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
             I L  N   G+IP SI  LK L+ LN+S+N   G+IP +L+NL  +ESLD+S N ++G+I
Sbjct:   836 IDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEI 895

Query:    61 PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGN-SEAS 119
             P +L  L+SLA+ +VSHN L G+IPQGTQF       + GNPGL G  L   CG+  E++
Sbjct:   896 PPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKEST 955

Query:   120 PAEDDP----PSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRLQPESN 175
             P + +P      E   +F W     G+A G + G+ +GYI  + K++W +KTF    + N
Sbjct:   956 PTQTEPLETKEEEEEESFSWIAAGLGFAPGVVFGLAMGYIVVSYKHQWFMKTFGRSKQQN 1015

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.9e-32, P = 4.9e-32
 Identities = 78/169 (46%), Positives = 99/169 (58%)

Query:     6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
             N   GEIP SI  LK L  LNLSNN   G+IPL+L+NL  IESLDLSSN+L+G IP  + 
Sbjct:   712 NRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIG 771

Query:    66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPA---- 121
              L+ LA+ +VSHN L G IPQGTQ +      F GN GLCG PL   C  + A PA    
Sbjct:   772 TLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPK 831

Query:   122 -EDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFR 169
              E++   E      WK V  GY  G ++G+ +  +  + K EWL+  F+
Sbjct:   832 EEEEEEEEEEQVLNWKGVGIGYGVGVLLGLAIAQLIASYKPEWLVFLFQ 880

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040035 RLP20 "receptor like protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 7.8e-32, P = 7.8e-32
 Identities = 74/164 (45%), Positives = 96/164 (58%)

Query:     6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
             N   G IP SI  LK L  LNLSNN   G+IP +L+NL  ++SLD+S N+L+G IP  L 
Sbjct:   499 NLLEGNIPESIGLLKALIALNLSNNAFTGHIPQSLANLKELQSLDMSRNQLSGTIPNGLK 558

Query:    66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAE--- 122
             +L+ LA+  VSHN L+G IPQGTQ +      F GN GLCG PL  +C ++ ASP +   
Sbjct:   559 QLSFLAYISVSHNQLKGEIPQGTQITGQLKSSFEGNVGLCGLPLEERCFDNSASPTQHHK 618

Query:   123 DDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIK 166
              D   E      WK V  GY  G ++G  + Y+  + K EWL K
Sbjct:   619 QDEEEEEEQVLHWKAVAMGYGPGLLVGFAIAYVIASYKPEWLTK 662

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 5.9e-31, P = 5.9e-31
 Identities = 74/163 (45%), Positives = 95/163 (58%)

Query:     6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
             N   G+IP SI  LK L  LN+SNN   G+IP +LSNL+ ++SLDLS N+L+G IP +L 
Sbjct:   723 NRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELG 782

Query:    66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDP 125
             ELT LA  + S+N L G IPQGTQ  +  +  FA NPGLCG PL  KCG  E    ED  
Sbjct:   783 ELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGAPLQKKCGGEEE---EDKE 839

Query:   126 PSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTF 168
               E      W     GY  G   G+ +G+I  + K +W ++ F
Sbjct:   840 KEEKDKGLSWVAAAIGYVPGLFCGLAIGHILTSYKRDWFMRIF 882

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 7.0e-31, P = 7.0e-31
 Identities = 73/165 (44%), Positives = 96/165 (58%)

Query:     6 NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
             N   G+IP SI  LK L  LNLSNN   G+IPL+ +NL  +ESLD+S N+L+G IP  L 
Sbjct:   699 NRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGTIPNGLG 758

Query:    66 ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPA---- 121
              L+ L +  V+HN L+G IPQGTQ +      F GN GLCG PL   C +S   P     
Sbjct:   759 SLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQETCFDSSVPPIQPKQ 818

Query:   122 EDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIK 166
             ED+   E +    WK V  GYA G + G+ + ++  + K EWL+K
Sbjct:   819 EDEEKGEVI---NWKAVAIGYAPGLLFGLAIAHLIASYKPEWLVK 860

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	185
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	7e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 29/176 (16%)

Query: 4   LDNN-FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           LDN    G IP  I+ L+ LQ++NLS N++RG IP +L ++T +E LDLS N   G IP+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 63  QLAELTSLAFFDVSHNHLRGAIP--------QGTQFSTFANDWFAGNPGLCGEPLSGKCG 114
            L +LTSL   +++ N L G +P            F+      F  N GLCG P    CG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN------FTDNAGLCGIPGLRACG 538

Query: 115 NSEASPAEDDPPSEFVLAFGWKIVLAGYASGTIIGVVLGYIFCTRKYEWLIKTFRL 170
                           L+ G KI +A   S   + +V+  +   ++ + +++  R+
Sbjct: 539 PH--------------LSVGAKIGIAFGVSVAFLFLVICAMCWWKRRQNILRAQRI 580

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 2e-21
 Identities = 45/105 (42%), Positives = 63/105 (60%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +N   GEIP  ++S K L +L+LS+N L G IP + S + V+  LDLS N+L+G+IP+
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGE 107
            L  + SL   ++SHNHL G++P    F        AGN  LCG 
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.9 bits (184), Expect = 4e-16
 Identities = 39/86 (45%), Positives = 47/86 (54%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I L  NN  GEIP  I  L  L  L+L  NNL G IP +L NL  ++ L L  NKL+G I
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQ 86
           P  +  L  L   D+S N L G IP+
Sbjct: 277 PPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 6e-16
 Identities = 38/83 (45%), Positives = 54/83 (65%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +N   GEIP  I S   L+ L+L  N L G IP +L+NLT +E L L+SN+L GQIP+
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
           +L ++ SL +  + +N+L G IP
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.1 bits (182), Expect = 8e-16
 Identities = 38/83 (45%), Positives = 48/83 (57%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N F G +P  + SL  L  L LS N L G IP  LS+   + SLDLS N+L+GQIP 
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
             +E+  L+  D+S N L G IP
Sbjct: 542 SFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N F G +P S  S K L+ L+LS N   G +P  L +L+ +  L LS NKL+G+IP 
Sbjct: 459 LARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTF 93
           +L+    L   D+SHN L G IP    FS  
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPAS--FSEM 546

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L DN+  GEIP  +  L+ L+ L+L +NN  G IP+ L++L  ++ L L SNK +G+IP+
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQG 87
            L +  +L   D+S N+L G IP+G
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 4e-15
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L+ NN  G IP+S+ +LK LQ L L  N L G IP ++ +L  + SLDLS N L+G+IP+
Sbjct: 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQG 87
            + +L +L    +  N+  G IP  
Sbjct: 303 LVIQLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.8 bits (176), Expect = 6e-15
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +NNF G IP    S+  L+TL+LSNN L G IP  + + + ++ LDL  N L G+IP 
Sbjct: 125 LSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
            L  LTSL F  ++ N L G IP
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 34/83 (40%), Positives = 44/83 (53%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N  VG+IP  +  +K L+ + L  NNL G IP  +  LT +  LDL  N LTG IP 
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
            L  L +L +  +  N L G IP
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 41/90 (45%), Positives = 50/90 (55%), Gaps = 12/90 (13%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL---SNLTVIESLDLSSNKLTGQ 59
           L  NNF G+IP ++ SL  LQ L L +N   G IP  L   +NLTV   LDLS+N LTG+
Sbjct: 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV---LDLSTNNLTGE 371

Query: 60  IPQQLAE---LTSLAFFDVSHNHLRGAIPQ 86
           IP+ L     L  L  F    N L G IP+
Sbjct: 372 IPEGLCSSGNLFKLILFS---NSLEGEIPK 398

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 6e-13
 Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 29/123 (23%)

Query: 7   NFVGEIPTSIASLKGLQTLNLSNNNLRGYIP------------LTLSN-----------L 43
           N  G+I ++I  L  +QT+NLSNN L G IP            L LSN           +
Sbjct: 80  NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI 139

Query: 44  TVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIP------QGTQFSTFANDW 97
             +E+LDLS+N L+G+IP  +   +SL   D+  N L G IP         +F T A++ 
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199

Query: 98  FAG 100
             G
Sbjct: 200 LVG 202

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 8e-13
 Identities = 35/86 (40%), Positives = 46/86 (53%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + L  N   G IP SI SL+ L +L+LS+N+L G IP  +  L  +E L L SN  TG+I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQ 86
           P  L  L  L    +  N   G IP+
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPK 350

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 26/86 (30%), Positives = 48/86 (55%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           +IL  N+  GEIP S+ + + L+ + L +N+  G +P   + L ++  LD+S+N L G+I
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQ 86
             +  ++ SL    ++ N   G +P 
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 6e-11
 Identities = 32/85 (37%), Positives = 41/85 (48%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N F GEIP ++     L  L+LS NNL G IP  L +   +  L L SN L G+IP+
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQG 87
            L    SL    +  N   G +P  
Sbjct: 399 SLGACRSLRRVRLQDNSFSGELPSE 423

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  NN  GEIP  + S   L  L L +N+L G IP +L     +  + L  N  +G++P 
Sbjct: 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 63  QLAELTSLAFFDVSHNHLRGAI-------PQGTQFSTFANDWFAGNPGLCG 106
           +  +L  + F D+S+N+L+G I       P     S   N +F G P   G
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 23/60 (38%), Positives = 32/60 (53%)

Query: 21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80
           L++L+LSNN L          L  ++ LDLS N LT   P+  + L SL   D+S N+L
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 1  IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKL 56
           + L NN +  IP      L  L+ L+LS NNL    P   S L  + SLDLS N L
Sbjct: 4  SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 24  TLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT-SLAFFDVSHNHLRG 82
           +++LS  N+ G I   +  L  I++++LS+N+L+G IP  +   + SL + ++S+N+  G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 83  AIPQGTQFSTFAND 96
           +IP+G+  +    D
Sbjct: 133 SIPRGSIPNLETLD 146

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 3/85 (3%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           + L NN + E+ +S+++LK L  L LSNN L   +P ++ NL+ +E+LDLS+N+++  I 
Sbjct: 214 LDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SIS 271

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQ 86
             L  LT+L   D+S N L  A+P 
Sbjct: 272 -SLGSLTNLRELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 27/77 (35%), Positives = 50/77 (64%), Gaps = 2/77 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N +  +P+ + +L  L+ L+LS N+L   +P  LSNL+ + +LDLS NK++  +P +
Sbjct: 147 LSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPE 204

Query: 64  LAELTSLAFFDVSHNHL 80
           +  L++L   D+S+N +
Sbjct: 205 IELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 7e-04
 Identities = 20/38 (52%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57
            L+TL+LSNN +   +P  LSNL  +E+LDLS NK+T
Sbjct: 1  TNLETLDLSNNQITD-LP-PLSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTV-IESLDLSSNKLTGQ 59
            + L+ N +    + +  L  L +L+L NNN+   IP  +  L   ++ LDLS NK+   
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNKIE-S 154

Query: 60  IPQQLAELTSLAFFDVSHNHL 80
           +P  L  L +L   D+S N L
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDL 175

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L NN + ++P SI +L  L+TL+LSNN +      +L +LT +  LDLS N L+  +P  
Sbjct: 239 LSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLI 296

Query: 64  LAELTSLA 71
              L  L 
Sbjct: 297 ALLLLLLE 304

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 4   LDNNFVGEIPTS-----IASLKGLQTLNLSNNNLRGYIPLTLSN-----LTVIESLDLSS 53
           L+NN + +   S     +ASLK L+ LNL +NNL       L++        + +L LS 
Sbjct: 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259

Query: 54  NKLT----GQIPQQLAELTSLAFFDVSHNHL 80
           N +T      + + LAE  SL   D+  N  
Sbjct: 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PLN03150	623	hypothetical protein; Provisional	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.56
PLN03150	623	hypothetical protein; Provisional	99.3
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.19
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.11
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.06
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.02
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.72
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.63
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.27
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.24
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.21
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.05
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.98
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.96
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.74
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.64
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.63
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.56
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.67
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.34
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.29
smart00370	26	LRR Leucine-rich repeats, outliers.	94.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.23
smart00370	26	LRR Leucine-rich repeats, outliers.	94.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	93.57
PRK15386	426	type III secretion protein GogB; Provisional	93.23
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.71
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	91.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.76
PRK15386	426	type III secretion protein GogB; Provisional	91.02
PF11770	158	GAPT: GRB2-binding adapter (GAPT); InterPro: IPR02	90.96
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	90.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	89.66
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.63
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.4
PF15050	133	SCIMP: SCIMP protein	88.61
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.23
PTZ00046	358	rifin; Provisional	87.58
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	87.39
TIGR01477	353	RIFIN variant surface antigen, rifin family. This	87.31
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	84.62
PF15176	102	LRR19-TM: Leucine-rich repeat family 19 TM domain	83.38
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.46

>PLN03150 hypothetical protein; Provisional

Probab=99.82  E-value=3.4e-20  Score=157.88  Aligned_cols=114  Identities=40%  Similarity=0.660  Sum_probs=103.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+..+++|+.|++++|++
T Consensus       423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCc--ccccccccccCCCCCCCCCCCCCCC
Q 039243           81 RGAIPQGTQ--FSTFANDWFAGNPGLCGEPLSGKCG  114 (185)
Q Consensus        81 ~~~~p~~~~--~~~l~~~~~~~n~~~c~~~~~~~C~  114 (185)
                      +|.+|....  ...+..+.+.+|+.+|+.+....|.
T Consensus       503 ~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        503 SGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             cccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999997642  2345567899999999987666674

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.74  E-value=7.6e-18  Score=150.22  Aligned_cols=108  Identities=42%  Similarity=0.720  Sum_probs=87.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++.+.+|+.+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|++
T Consensus       504 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             EECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            46777777777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      .|.+|....+..+....+.||+.+|+.+
T Consensus       584 ~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        584 HGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             eeeCCCcchhcccChhhhcCCccccCCc
Confidence            8888877777777777788888888753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.56  E-value=6.6e-15  Score=131.52  Aligned_cols=108  Identities=37%  Similarity=0.541  Sum_probs=99.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|++++..|..+.++++|+.|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++
T Consensus       480 L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      .+.+|... .+..+..+.+.+|+..+..|
T Consensus       560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        560 SGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99998754 56778888999998876554

>PLN03150 hypothetical protein; Provisional

Probab=99.30  E-value=2.2e-12  Score=110.38  Aligned_cols=88  Identities=35%  Similarity=0.568  Sum_probs=79.4

Q ss_pred             ccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCC-ccccccccccc
Q 039243           21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT-QFSTFANDWFA   99 (185)
Q Consensus        21 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~~~~l~~~~~~   99 (185)
                      .++.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..+..+++|+.|++++|+++|.+|... .+.++..+.+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37789999999999999999999999999999999999999999999999999999999999999754 67788889999


Q ss_pred             CCCCCCCCC
Q 039243          100 GNPGLCGEP  108 (185)
Q Consensus       100 ~n~~~c~~~  108 (185)
                      +|...+..|
T Consensus       499 ~N~l~g~iP  507 (623)
T PLN03150        499 GNSLSGRVP  507 (623)
T ss_pred             CCcccccCC
Confidence            987665443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.20  E-value=8.3e-12  Score=98.60  Aligned_cols=102  Identities=22%  Similarity=0.235  Sum_probs=90.0

Q ss_pred             CCCCCch-hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCC
Q 039243            8 FVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQ   86 (185)
Q Consensus         8 l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~   86 (185)
                      ..++.|. .|..|++|+.|+|++|+|+..-+++|.++..+++|.|..|+|.......|.++..|+.|+|.+|+++..-|.
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            4444453 689999999999999999999999999999999999999999977788899999999999999999988887


Q ss_pred             CC-cccccccccccCCCCCCCCCC
Q 039243           87 GT-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        87 ~~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      .+ ....+..+.+.+||+.|+|..
T Consensus       341 aF~~~~~l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             cccccceeeeeehccCcccCccch
Confidence            66 356678888999999998854

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.19  E-value=8.1e-12  Score=74.89  Aligned_cols=61  Identities=43%  Similarity=0.655  Sum_probs=53.9

Q ss_pred             cccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243           20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus        20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      ++|+.|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4688999999999977778899999999999999999977778899999999999999875

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.14  E-value=3.1e-12  Score=91.04  Aligned_cols=101  Identities=28%  Similarity=0.492  Sum_probs=77.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |-||+|.++ .+|+.+..+.+|+.|++++|+|+ .+|.+++.++.|+.|+++-|++. ..|..|+.++.|+.||++.|++
T Consensus        38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence            347889888 55666788999999999999998 88888899999999999999998 7888888888899999888877


Q ss_pred             cC-CCCCCC-cccccccccccCCCCC
Q 039243           81 RG-AIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~-~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      .. ..|..+ .+..+..++++.|.+.
T Consensus       115 ~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen  115 NENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             ccccCCcchhHHHHHHHHHhcCCCcc
Confidence            52 445433 2344555555555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.11  E-value=1e-11  Score=102.41  Aligned_cols=109  Identities=23%  Similarity=0.265  Sum_probs=63.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCC---------------------
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ---------------------   59 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~---------------------   59 (185)
                      |||+.|+++...+++|..|..|++|+|++|+|+......|..+.+|+.|||++|.|++.                     
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g  401 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG  401 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence            46677777766666666666666666666665544444555555555555555544433                     


Q ss_pred             ------CchHhhcCCCCcEEEecCCcCcCCCCCCCcccccccccccCCCCCCCCCC
Q 039243           60 ------IPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        60 ------~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~  109 (185)
                            ...+|.++..|++|||.+|.+....|+.+.-..+..+.+....++|+|..
T Consensus       402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence                  23345555566666666666655555554433555556666668888854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.06  E-value=1.1e-11  Score=102.27  Aligned_cols=102  Identities=23%  Similarity=0.232  Sum_probs=72.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+||.|.|..+-++.+.-.++|++|+|++|+|+...+++|..|..|+.|+|++|+++....++|.++++|+.|||++|.+
T Consensus       298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            56777777777777777777777777777777766667777777777777777777766666777778888888888887


Q ss_pred             cCCCCCCC----cccccccccccCCC
Q 039243           81 RGAIPQGT----QFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~----~~~~l~~~~~~~n~  102 (185)
                      +..+.+..    .++++..+.+.||.
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCce
Confidence            76665532    34555666666664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.03  E-value=1.8e-11  Score=87.23  Aligned_cols=102  Identities=27%  Similarity=0.380  Sum_probs=82.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCC-CCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|+++ .+|..++.++.|+.|+++-|++. .+|..|+.++.|+.||+..|++.. .+|+.|..+..|+.|.+++|.
T Consensus        61 ln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen   61 LNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             hhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC
Confidence            457788887 67888889999999999999998 889999999999999999988863 478888888888888888888


Q ss_pred             CcCCCCCCCcccccccccccCCCCC
Q 039243           80 LRGAIPQGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        80 l~~~~p~~~~~~~l~~~~~~~n~~~  104 (185)
                      +.-..|+..++.+++.+.+..|..+
T Consensus       139 fe~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  139 FEILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             cccCChhhhhhcceeEEeeccCchh
Confidence            8866666667777777766666544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.02  E-value=1e-10  Score=70.05  Aligned_cols=56  Identities=43%  Similarity=0.554  Sum_probs=52.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKL   56 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l   56 (185)
                      |++++|+++...++.|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         6 L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    6 LDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             EEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             EECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999988888999999999999999999988889999999999999999986

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.01  E-value=6.2e-11  Score=94.08  Aligned_cols=97  Identities=25%  Similarity=0.350  Sum_probs=76.0

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccc-cCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      +|..|.+. .+| +|+++..|..++++.|+|. .+|... ..+.++..||+..|+++ ..|+.++.+.+|..+|+++|.+
T Consensus       212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDI  287 (565)
T ss_pred             Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcc
Confidence            45556555 344 5666666667777777776 555544 47899999999999999 8999999999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~  103 (185)
                      ++..+....+ ++..+.+.|||.
T Consensus       288 s~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  288 SSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccCCcccccc-eeeehhhcCCch
Confidence            9777766666 788888999984

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=4.9e-10  Score=80.99  Aligned_cols=97  Identities=26%  Similarity=0.403  Sum_probs=38.7

Q ss_pred             CEecCCcCCCCCchhcc-CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHh-hcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL-AELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~l~l~~N   78 (185)
                      |+|.+|.|+.+  +.++ .+.+|+.|+|++|.|+ .++ .+..++.|+.|++++|+|+ .+++.+ ..+++|+.|++++|
T Consensus        24 L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   24 LNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             --------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS
T ss_pred             ccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCC
Confidence            57889998864  2455 5789999999999999 454 4788999999999999999 555545 46899999999999


Q ss_pred             cCcCCCCCC---CcccccccccccCCCC
Q 039243           79 HLRGAIPQG---TQFSTFANDWFAGNPG  103 (185)
Q Consensus        79 ~l~~~~p~~---~~~~~l~~~~~~~n~~  103 (185)
                      ++.. +.+.   ..++++..+++.|||.
T Consensus        99 ~I~~-l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   99 KISD-LNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             ---S-CCCCGGGGG-TT--EEE-TT-GG
T ss_pred             cCCC-hHHhHHHHcCCCcceeeccCCcc
Confidence            9974 3222   2467788888999985

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.98  E-value=2.7e-11  Score=95.76  Aligned_cols=109  Identities=27%  Similarity=0.306  Sum_probs=82.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCC-CcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      ++|..|+|+.+.|++|+.+++|+.|||++|.|+.+-|++|.++++|..|-+-+ |+|+....+.|.++.+|+.|.+.-|+
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            46889999999999999999999999999999999999999999987776655 99996666677777666666666666


Q ss_pred             CcCCCCCC------------------------C-cccccccccccCCCCCCCCCC
Q 039243           80 LRGAIPQG------------------------T-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        80 l~~~~p~~------------------------~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      +.+...+.                        + .+..+..+-...||+.|+|..
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence            55333221                        1 233445556778999988855

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.82  E-value=5.8e-10  Score=96.16  Aligned_cols=100  Identities=31%  Similarity=0.417  Sum_probs=58.9

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+.......+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++
T Consensus       389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             eecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence            44455444333333444555555555555555 44444455555555555555555 455 5666788899999998886


Q ss_pred             C-CCCCCCcccccccccccCCCCC
Q 039243           82 G-AIPQGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        82 ~-~~p~~~~~~~l~~~~~~~n~~~  104 (185)
                      . .+|.....+++..+++.||++.
T Consensus       466 ~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  466 EVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhhhhhhCCCcccceeeccCCccc
Confidence            3 3344444477888899999864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.78  E-value=1.2e-09  Score=86.86  Aligned_cols=98  Identities=28%  Similarity=0.429  Sum_probs=78.1

Q ss_pred             CCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchH---------------------
Q 039243            5 DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ---------------------   63 (185)
Q Consensus         5 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~---------------------   63 (185)
                      .|+..+.+|..+..+++|..|+|++|.+. .+|..++.+..|+.|+++.|++. .+|..                     
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd  497 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD  497 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC
Confidence            34445578888899999999999999998 88999999999999999988776 45532                     


Q ss_pred             ---hhcCCCCcEEEecCCcCcCCCCCCCcccccccccccCCCCC
Q 039243           64 ---LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        64 ---~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~  104 (185)
                         +.++.+|..||+.+|.+...+|....+.++..+.+.|||+-
T Consensus       498 ~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  498 PSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence               55567788888888888866666667788888888888864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.72  E-value=2.8e-09  Score=89.28  Aligned_cols=90  Identities=38%  Similarity=0.495  Sum_probs=50.0

Q ss_pred             CchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchH-hhcCCCCcEEEecCCcCcCCCCCCCcc
Q 039243           12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ-LAELTSLAFFDVSHNHLRGAIPQGTQF   90 (185)
Q Consensus        12 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~p~~~~~   90 (185)
                      +|..+..+..|+.||||+|+++ ..|..+..-+++-.|+||+|+|. .+|.. |-++..|-.||||+|.+...+|....+
T Consensus        95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL  172 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRL  172 (1255)
T ss_pred             CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHH
Confidence            4444445555666666666665 55555555555666666666665 34433 335555666666666666555544444


Q ss_pred             cccccccccCCCC
Q 039243           91 STFANDWFAGNPG  103 (185)
Q Consensus        91 ~~l~~~~~~~n~~  103 (185)
                      ..+..+.+++||.
T Consensus       173 ~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPL  185 (1255)
T ss_pred             hhhhhhhcCCChh
Confidence            4555555555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.68  E-value=1.5e-08  Score=73.28  Aligned_cols=78  Identities=29%  Similarity=0.366  Sum_probs=38.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccc-cCCCCCCEEeCCCCcCCCC-CchHhhcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQ-IPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~l~l~~N   78 (185)
                      |+|++|.++...  .+..++.|+.|++++|.|+ .++..+ ..+++|++|++++|+|... .-..+..+++|+.|++.+|
T Consensus        47 L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N  123 (175)
T PF14580_consen   47 LDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN  123 (175)
T ss_dssp             EE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred             EECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence            589999999653  4778999999999999999 554444 4689999999999999742 1245678999999999999


Q ss_pred             cCc
Q 039243           79 HLR   81 (185)
Q Consensus        79 ~l~   81 (185)
                      ++.
T Consensus       124 Pv~  126 (175)
T PF14580_consen  124 PVC  126 (175)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.63  E-value=3.5e-09  Score=91.46  Aligned_cols=100  Identities=28%  Similarity=0.388  Sum_probs=88.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |.+.+|.++...-+.+.+..+|+.|+|++|++.......+.++..|++|+||+|+++ .+|.++..++.|+.|...+|.+
T Consensus       364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             HHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce
Confidence            356789999888888999999999999999999555566899999999999999999 8999999999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      . ..|+..++..+..++++.|.
T Consensus       443 ~-~fPe~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  443 L-SFPELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             e-echhhhhcCcceEEecccch
Confidence            8 67787788888888888775

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.62  E-value=8.9e-09  Score=79.48  Aligned_cols=77  Identities=26%  Similarity=0.324  Sum_probs=48.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      ||||+|.|+ .+.++..-++.++.|++|.|.|. .+.. +..|++|+.|||++|.++ .+-+.-..+.+.+.|.++.|.+
T Consensus       289 lDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  289 LDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             ccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence            467777766 45555666677777777777776 3322 666777777777777776 4445444555555555555544


Q ss_pred             c
Q 039243           81 R   81 (185)
Q Consensus        81 ~   81 (185)
                      .
T Consensus       365 E  365 (490)
T KOG1259|consen  365 E  365 (490)
T ss_pred             h
Confidence            3

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.59  E-value=6.9e-09  Score=86.99  Aligned_cols=106  Identities=25%  Similarity=0.391  Sum_probs=87.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeeccccccc-CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+||.|+++ .+|+++..|+.|+.|.+.+|+++ .-+|+.++.|.+|+.+..++|.+. ..|..++.+..|+.|.|+.|.
T Consensus       273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccc
Confidence            567788877 67888888888888888888875 247888888889999999999988 889999999999999999999


Q ss_pred             CcCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      +- .+|+.+ .+..+..+++..||.+..+|.
T Consensus       351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             ee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence            87 567665 467788889999998876543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.43  E-value=2.5e-08  Score=68.66  Aligned_cols=82  Identities=29%  Similarity=0.357  Sum_probs=53.2

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+....+..-..++.++.|+|++|+|+ .+|..+..++.|+.++++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus        59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            45666666433332234456777777777777 66766777777777777777777 66676666767777777777665


Q ss_pred             CCCCC
Q 039243           82 GAIPQ   86 (185)
Q Consensus        82 ~~~p~   86 (185)
                       .+|.
T Consensus       137 -eid~  140 (177)
T KOG4579|consen  137 -EIDV  140 (177)
T ss_pred             -cCcH
Confidence             4443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.43  E-value=2e-07  Score=51.86  Aligned_cols=36  Identities=44%  Similarity=0.695  Sum_probs=17.5

Q ss_pred             ccceeecccccccCCCcccccCCCCCCEEeCCCCcCC
Q 039243           21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT   57 (185)
Q Consensus        21 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   57 (185)
                      +|++|++++|+|+ .+|..+..|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3555555555555 34444555555555555555554

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.41  E-value=3.2e-08  Score=81.84  Aligned_cols=97  Identities=26%  Similarity=0.448  Sum_probs=59.8

Q ss_pred             ecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcC
Q 039243            3 LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRG   82 (185)
Q Consensus         3 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~   82 (185)
                      +++|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..++ |..||++.|++. 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-
Confidence            4445444 45556666666666666666666 56666666666666666666665 4555555443 777777777777 


Q ss_pred             CCCCC-CcccccccccccCCCCC
Q 039243           83 AIPQG-TQFSTFANDWFAGNPGL  104 (185)
Q Consensus        83 ~~p~~-~~~~~l~~~~~~~n~~~  104 (185)
                      .+|.. ..+..+..+.++.||..
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC
Confidence            44443 35666677777777743

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=4.1e-08  Score=83.42  Aligned_cols=102  Identities=29%  Similarity=0.351  Sum_probs=65.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++...-  .+..++.|+.|||++|.++ .+|.--..--.|+.|.+++|.++ .+ ..+.++.+|..||++.|-+
T Consensus       192 LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  192 LNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             hccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccchhHhhh
Confidence            567777776442  5666777777777777777 44432222223777777777776 22 2367788888999998877


Q ss_pred             cCCCCC--CCcccccccccccCCCCCCCC
Q 039243           81 RGAIPQ--GTQFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        81 ~~~~p~--~~~~~~l~~~~~~~n~~~c~~  107 (185)
                      .+--.-  ...+..+..+++.|||..|..
T Consensus       267 ~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  267 SEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            642111  123455677889999988843

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.30  E-value=8.7e-07  Score=49.22  Aligned_cols=37  Identities=35%  Similarity=0.642  Sum_probs=32.6

Q ss_pred             CCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243           44 TVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        44 ~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++|++|++++|+|+ .+|..+.++++|+.+++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            47999999999999 78888999999999999999988

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.28  E-value=7e-07  Score=77.97  Aligned_cols=76  Identities=29%  Similarity=0.430  Sum_probs=39.0

Q ss_pred             cccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC-Ccccccccccc
Q 039243           20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG-TQFSTFANDWF   98 (185)
Q Consensus        20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~   98 (185)
                      .+|+.|++++|.|+ .+|...   .+|+.|++++|+|+ .+|...   .+|+.|++++|+++ .+|.. ..+..+..+.+
T Consensus       382 ~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            35666667766666 344322   35566666666665 344322   23455555555555 33432 23444555555


Q ss_pred             cCCCCC
Q 039243           99 AGNPGL  104 (185)
Q Consensus        99 ~~n~~~  104 (185)
                      ++|+..
T Consensus       453 s~N~Ls  458 (788)
T PRK15387        453 EGNPLS  458 (788)
T ss_pred             CCCCCC
Confidence            555543

>PLN03210 Resistant to P

Probab=98.27  E-value=2.8e-06  Score=77.90  Aligned_cols=100  Identities=22%  Similarity=0.298  Sum_probs=65.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|.+|++. .++..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|+++++..
T Consensus       616 L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        616 LQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             EECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence            355666655 3555566777777777776654335553 66777788888877654447777788888888888887543


Q ss_pred             cCCCCCCCcccccccccccCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      -+.+|....+.++..+.+.++.
T Consensus       694 L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        694 LEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             cCccCCcCCCCCCCEEeCCCCC
Confidence            3456655555666666665553

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.26  E-value=2.1e-07  Score=72.04  Aligned_cols=66  Identities=32%  Similarity=0.396  Sum_probs=56.9

Q ss_pred             hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcC
Q 039243           14 TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRG   82 (185)
Q Consensus        14 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~   82 (185)
                      .....++.|+.+|||+|.|+ .+..+..-++.++.|++++|.|. .+ +.++.+++|++||+++|.++.
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~  343 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE  343 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHh
Confidence            34455678999999999999 88888889999999999999998 44 348899999999999998863

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.24  E-value=2.9e-06  Score=74.14  Aligned_cols=72  Identities=32%  Similarity=0.606  Sum_probs=33.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|+++. +|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|++
T Consensus       204 L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L  274 (754)
T PRK15370        204 LILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKI  274 (754)
T ss_pred             EEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCcc
Confidence            3556666663 343332  35566666666655 3443332  23444444444444 3343332  2344444444444


Q ss_pred             c
Q 039243           81 R   81 (185)
Q Consensus        81 ~   81 (185)
                      +
T Consensus       275 ~  275 (754)
T PRK15370        275 S  275 (754)
T ss_pred             C
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.22  E-value=8.3e-07  Score=77.50  Aligned_cols=72  Identities=31%  Similarity=0.578  Sum_probs=43.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.++. +|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++++|+|+ .+|..+.  ++|+.|++++|.+
T Consensus       309 L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~L  379 (754)
T PRK15370        309 LNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNAL  379 (754)
T ss_pred             HHhcCCcccc-CCcccc--ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcC
Confidence            3566777764 343332  56677777777776 3554443  56777777777766 4565442  4666677776666


Q ss_pred             c
Q 039243           81 R   81 (185)
Q Consensus        81 ~   81 (185)
                      +
T Consensus       380 t  380 (754)
T PRK15370        380 T  380 (754)
T ss_pred             C
Confidence            6

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=7.8e-08  Score=66.24  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             CEecCCcCCCCCch---hccCCcccceeecccccccCCCcccccCC-CCCCEEeCCCCcCCCCCchHhhcCCCCcEEEec
Q 039243            1 IILLDNNFVGEIPT---SIASLKGLQTLNLSNNNLRGYIPLTLSNL-TVIESLDLSSNKLTGQIPQQLAELTSLAFFDVS   76 (185)
Q Consensus         1 L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~   76 (185)
                      +||+++.+- .+++   .+.....|...+|++|.+. ..|..|... +.++.+++++|.|+ .+|..+..++.|+.++++
T Consensus        32 ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   32 LDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLR  108 (177)
T ss_pred             cccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccc
Confidence            356666554 2333   3445567888899999999 666666554 58999999999999 899999999999999999


Q ss_pred             CCcCcCCCCCCCcccccccccccCC
Q 039243           77 HNHLRGAIPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        77 ~N~l~~~~p~~~~~~~l~~~~~~~n  101 (185)
                      .|++...+.....+.++..++..+|
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCC
Confidence            9999844433344555554444444

>PLN03210 Resistant to P

Probab=98.21  E-value=5.6e-06  Score=75.94  Aligned_cols=98  Identities=24%  Similarity=0.384  Sum_probs=62.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCC---------------------CCCEEeCCCCcCCCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLT---------------------VIESLDLSSNKLTGQ   59 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~---------------------~L~~L~l~~N~l~~~   59 (185)
                      |+|++|...+.+|..++++++|+.|++++|..-+.+|..+ .++                     +|+.|++++|.++ .
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~  860 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-E  860 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-c
Confidence            4677787777889889999999999998865333555443 333                     4555666666666 5


Q ss_pred             CchHhhcCCCCcEEEecC-CcCcCCCCCCCcccccccccccC
Q 039243           60 IPQQLAELTSLAFFDVSH-NHLRGAIPQGTQFSTFANDWFAG  100 (185)
Q Consensus        60 ~p~~~~~l~~L~~l~l~~-N~l~~~~p~~~~~~~l~~~~~~~  100 (185)
                      +|..+..+++|+.|++++ |.+.+..+....+..+..+.+.+
T Consensus       861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD  902 (1153)
T ss_pred             ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence            677777777888888876 45554333333344444444433

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.20  E-value=1.7e-06  Score=75.68  Aligned_cols=33  Identities=33%  Similarity=0.370  Sum_probs=17.3

Q ss_pred             CCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243           45 VIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        45 ~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|+.|++++|+|+ .+|..   .++|+.|++++|.++
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT  415 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC
Confidence            3555555555555 23332   234566666666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.13  E-value=1.2e-06  Score=71.30  Aligned_cols=96  Identities=34%  Similarity=0.523  Sum_probs=61.6

Q ss_pred             EecCCcCCCCCchhccCCc-ccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            2 ILLDNNFVGEIPTSIASLK-GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      ++.+|+++. +|.....+. +|+.|++++|.+. .+|..+..+++|+.|+++.|+++ .+|......+.|..+++++|.+
T Consensus       122 ~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i  198 (394)
T COG4886         122 DLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI  198 (394)
T ss_pred             ecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcc
Confidence            455666663 444444553 7778888888877 66666777777888888888877 5666555667777777777777


Q ss_pred             cCCCCCCC-cccccccccccCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n  101 (185)
                      + .+|... ....+..+.+.+|
T Consensus       199 ~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         199 S-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             c-cCchhhhhhhhhhhhhhcCC
Confidence            7 444432 2233455555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.05  E-value=4.6e-07  Score=75.19  Aligned_cols=76  Identities=38%  Similarity=0.572  Sum_probs=42.1

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ||+.|.+. .+|..+..+..|+.+.|..|.+. .+|..+.++..|.++||+.|+++ .+|..++.++ |+.+-+++|++.
T Consensus        81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~  156 (722)
T KOG0532|consen   81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT  156 (722)
T ss_pred             hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc
Confidence            45555555 45555555555555555555555 55555555555555555555555 4555555544 555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.98  E-value=1.2e-06  Score=68.82  Aligned_cols=80  Identities=29%  Similarity=0.360  Sum_probs=40.3

Q ss_pred             EecCCcCCCCCchhccCCcc---cceeecccccccC----CCcccccCC-CCCCEEeCCCCcCCCC----CchHhhcCCC
Q 039243            2 ILLDNNFVGEIPTSIASLKG---LQTLNLSNNNLRG----YIPLTLSNL-TVIESLDLSSNKLTGQ----IPQQLAELTS   69 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~l~~N~l~~~----~p~~~~~l~~   69 (185)
                      ++++|.+.+..+..+..+..   |+.|++++|.++.    .+...+..+ ++|+.|++++|.+++.    ++..+..+.+
T Consensus        87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  166 (319)
T cd00116          87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD  166 (319)
T ss_pred             EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence            45555555444444444433   6666666665552    122233444 5566666666666532    1223344455


Q ss_pred             CcEEEecCCcCc
Q 039243           70 LAFFDVSHNHLR   81 (185)
Q Consensus        70 L~~l~l~~N~l~   81 (185)
                      |+.+++++|.++
T Consensus       167 L~~L~l~~n~l~  178 (319)
T cd00116         167 LKELNLANNGIG  178 (319)
T ss_pred             cCEEECcCCCCc
Confidence            666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.97  E-value=1.9e-06  Score=67.75  Aligned_cols=102  Identities=19%  Similarity=0.259  Sum_probs=61.6

Q ss_pred             CEecCCcCCC----CCchhccCC-cccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcC
Q 039243            1 IILLDNNFVG----EIPTSIASL-KGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAEL   67 (185)
Q Consensus         1 L~L~~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l   67 (185)
                      |++++|.++.    .+...+..+ ++|+.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    ++..+...
T Consensus       113 L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~  192 (319)
T cd00116         113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN  192 (319)
T ss_pred             EEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC
Confidence            4567777663    223344555 7788888888887742    333455667788888888887742    22334455


Q ss_pred             CCCcEEEecCCcCcCCCCC-----CCcccccccccccCCC
Q 039243           68 TSLAFFDVSHNHLRGAIPQ-----GTQFSTFANDWFAGNP  102 (185)
Q Consensus        68 ~~L~~l~l~~N~l~~~~p~-----~~~~~~l~~~~~~~n~  102 (185)
                      ++|+.+++++|.+.+....     ....+++..+.+.+|+
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            6788888888876532211     1123456666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.96  E-value=3.3e-06  Score=68.65  Aligned_cols=100  Identities=29%  Similarity=0.458  Sum_probs=73.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+. .+|..+..++.|+.|++++|+++ .+|.....++.|+.|++++|+++ .+|........|+.+++++|.+
T Consensus       145 L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         145 LDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             ccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc
Confidence            577888887 45566789999999999999999 77776668899999999999999 7888766666799999999953


Q ss_pred             cCCCCCCCcccccccccccCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~  103 (185)
                      ...+.....+..+..+...+|..
T Consensus       222 ~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         222 IELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             eecchhhhhcccccccccCCcee
Confidence            32333333334444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.90  E-value=6.5e-06  Score=73.19  Aligned_cols=90  Identities=21%  Similarity=0.295  Sum_probs=68.9

Q ss_pred             CCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC
Q 039243            8 FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG   87 (185)
Q Consensus         8 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~   87 (185)
                      +....++.|..++.|.+|||++|.=-+.+|..++.|-+|++|++++..++ .+|..+.++..|.+||+..+.-...+|..
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence            33344455788999999999988766699999999999999999999999 88999999999999999987654444443


Q ss_pred             Cc-ccccccccc
Q 039243           88 TQ-FSTFANDWF   98 (185)
Q Consensus        88 ~~-~~~l~~~~~   98 (185)
                      .. +.++..+.+
T Consensus       638 ~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  638 LLELQSLRVLRL  649 (889)
T ss_pred             hhhcccccEEEe
Confidence            32 455554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.87  E-value=3.1e-05  Score=56.76  Aligned_cols=83  Identities=22%  Similarity=0.307  Sum_probs=59.6

Q ss_pred             CcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCC--CCCCCcccccccc
Q 039243           19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGA--IPQGTQFSTFAND   96 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~--~p~~~~~~~l~~~   96 (185)
                      +.+...+||++|.+. .+ ..|..++.|.+|.+++|+|+...|.--.-+++|..|.+.+|++...  +.....++.+..+
T Consensus        41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            346778888888886 32 3467888889999999999876666555677788899998887632  2223345677777


Q ss_pred             cccCCCC
Q 039243           97 WFAGNPG  103 (185)
Q Consensus        97 ~~~~n~~  103 (185)
                      .+.|||-
T Consensus       119 tll~Npv  125 (233)
T KOG1644|consen  119 TLLGNPV  125 (233)
T ss_pred             eecCCch
Confidence            7888873

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.74  E-value=1.5e-06  Score=74.15  Aligned_cols=93  Identities=26%  Similarity=0.298  Sum_probs=60.8

Q ss_pred             cCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCC
Q 039243            4 LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGA   83 (185)
Q Consensus         4 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~   83 (185)
                      +.|.+. ....++.-++.|+.|||++|+++.. . .+..++.|++|||+.|.++ .+|..-..-..|..|.+.+|.++ .
T Consensus       172 syN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-t  246 (1096)
T KOG1859|consen  172 SYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-T  246 (1096)
T ss_pred             chhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-h
Confidence            344443 3445566677788888888888733 2 6778888888888888887 56653222224888888888776 3


Q ss_pred             CCCCCcccccccccccCC
Q 039243           84 IPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        84 ~p~~~~~~~l~~~~~~~n  101 (185)
                      +-...++.++..++++.|
T Consensus       247 L~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  247 LRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             hhhHHhhhhhhccchhHh
Confidence            444445666666666655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.64  E-value=2.3e-05  Score=69.75  Aligned_cols=78  Identities=29%  Similarity=0.410  Sum_probs=69.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |||++|.=-+.+|..+++|-+|++|+|++..+. .+|..+.+|..|.+|++..+.-...+|+....+++|++|.+-...
T Consensus       576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             EECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            689988878899999999999999999999999 999999999999999999887655668888889999999886543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.63  E-value=2.8e-05  Score=63.86  Aligned_cols=83  Identities=31%  Similarity=0.385  Sum_probs=35.4

Q ss_pred             cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCC-CCccccccc
Q 039243           17 ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQ-GTQFSTFAN   95 (185)
Q Consensus        17 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~   95 (185)
                      ..+++|+.|++++|.|+...+  +..+..|+.|++++|.|+ .+.+ +..+..|+.+++++|.+....+. ...+..+..
T Consensus       115 ~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEE  190 (414)
T ss_pred             hhhhcchheeccccccccccc--hhhccchhhheeccCcch-hccC-CccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence            344455555555555542222  223334555555555554 2211 22344455555555554422221 123344444


Q ss_pred             ccccCCCC
Q 039243           96 DWFAGNPG  103 (185)
Q Consensus        96 ~~~~~n~~  103 (185)
                      +.+.+|..
T Consensus       191 l~l~~n~i  198 (414)
T KOG0531|consen  191 LDLGGNSI  198 (414)
T ss_pred             HhccCCch
Confidence            44555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.58  E-value=7.1e-05  Score=54.93  Aligned_cols=78  Identities=26%  Similarity=0.322  Sum_probs=62.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCc--hHhhcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP--QQLAELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~l~l~~N   78 (185)
                      +||++|.+-..  +.|..++.|.+|.|.+|+|+...|..-..+++|+.|.+.+|.|. .+-  +-+..++.|+.|.+-+|
T Consensus        47 iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   47 IDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             ecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCC
Confidence            47788877532  35778899999999999999777777677888999999999987 332  23567889999999999


Q ss_pred             cCc
Q 039243           79 HLR   81 (185)
Q Consensus        79 ~l~   81 (185)
                      +..
T Consensus       124 pv~  126 (233)
T KOG1644|consen  124 PVE  126 (233)
T ss_pred             chh
Confidence            875

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.56  E-value=1.9e-05  Score=64.79  Aligned_cols=84  Identities=30%  Similarity=0.310  Sum_probs=55.5

Q ss_pred             hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCcccccc
Q 039243           15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFA   94 (185)
Q Consensus        15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~   94 (185)
                      .+..+++|+.|++.+|.|. .+...+..+.+|++|++++|.|+...  .+..++.|+.|++++|.++ .+.....+..+.
T Consensus        90 ~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~  165 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISGLESLKSLK  165 (414)
T ss_pred             ccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccCCccchhhh
Confidence            3566778888888888887 44443667788888888888887332  2455667888888888877 334333344555


Q ss_pred             cccccCCC
Q 039243           95 NDWFAGNP  102 (185)
Q Consensus        95 ~~~~~~n~  102 (185)
                      ...+++|.
T Consensus       166 ~l~l~~n~  173 (414)
T KOG0531|consen  166 LLDLSYNR  173 (414)
T ss_pred             cccCCcch
Confidence            55555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00014  Score=58.91  Aligned_cols=80  Identities=30%  Similarity=0.409  Sum_probs=48.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCc--ccccCCCCCCEEeCCCCcCCCC-CchH-----hhcCCCCcE
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP--LTLSNLTVIESLDLSSNKLTGQ-IPQQ-----LAELTSLAF   72 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~l~~N~l~~~-~p~~-----~~~l~~L~~   72 (185)
                      |+|+.|+..........-+..|+.|||++|++- ..+  ...+.++.|..|+++.+.+... .|+.     ...+++|+.
T Consensus       227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~  305 (505)
T KOG3207|consen  227 LYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY  305 (505)
T ss_pred             hhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence            345666433333333445677788888887776 333  3456677777777777776532 2222     234567888


Q ss_pred             EEecCCcCc
Q 039243           73 FDVSHNHLR   81 (185)
Q Consensus        73 l~l~~N~l~   81 (185)
                      |+++.|++.
T Consensus       306 L~i~~N~I~  314 (505)
T KOG3207|consen  306 LNISENNIR  314 (505)
T ss_pred             eecccCccc
Confidence            888888774

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.0017  Score=49.46  Aligned_cols=61  Identities=21%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             CcccceeecccccccCCCcccccCCCCCCEEeCCCC--cCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243           19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN--KLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N--~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +..|+.|.+.+-.++..  ..|..|++|+.|.++.|  ++++.++.....+++|+++++++|+++
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34444444444444311  22445555555556555  444444444444455556666555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.74  E-value=0.0011  Score=50.36  Aligned_cols=66  Identities=26%  Similarity=0.382  Sum_probs=52.1

Q ss_pred             hccCCcccceeecccc--cccCCCcccccCCCCCCEEeCCCCcCCCCCchHh---hcCCCCcEEEecCCcCcC
Q 039243           15 SIASLKGLQTLNLSNN--NLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL---AELTSLAFFDVSHNHLRG   82 (185)
Q Consensus        15 ~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~---~~l~~L~~l~l~~N~l~~   82 (185)
                      .|..|++|+.|.++.|  .+++.++.....+++|+++++++|+++ . ++++   ..+.+|..|++.++..+.
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhhhhcccCCccc
Confidence            3567889999999999  777777777777799999999999998 2 4443   455678889998887654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.70  E-value=0.00069  Score=31.54  Aligned_cols=19  Identities=53%  Similarity=0.725  Sum_probs=11.0

Q ss_pred             cceeecccccccCCCccccc
Q 039243           22 LQTLNLSNNNLRGYIPLTLS   41 (185)
Q Consensus        22 L~~L~Ls~N~l~~~~p~~~~   41 (185)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666666 5555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.00032  Score=56.97  Aligned_cols=39  Identities=13%  Similarity=0.072  Sum_probs=17.5

Q ss_pred             cCCCCcEEEecCCc-CcCCCCCCCcccccccccccCCCCC
Q 039243           66 ELTSLAFFDVSHNH-LRGAIPQGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        66 ~l~~L~~l~l~~N~-l~~~~p~~~~~~~l~~~~~~~n~~~  104 (185)
                      .+++|..|++..|. +....-....++.+..+++++|+.+
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            34555566665553 1111111223444555556665544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.001  Score=51.84  Aligned_cols=80  Identities=29%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             CEecCCcCCC--CCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCc-hHhhcCCCCcEEEecC
Q 039243            1 IILLDNNFVG--EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP-QQLAELTSLAFFDVSH   77 (185)
Q Consensus         1 L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~l~l~~   77 (185)
                      |||.+|.|+.  .+..-+.+++.|++|+|+.|++...+...-..+.+|+.|-|.+..+...-. ..+..+|.++.+.++.
T Consensus        76 lDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             hhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence            4566676652  223335577778888888887763332222355677777777766654322 2344666777777777


Q ss_pred             CcC
Q 039243           78 NHL   80 (185)
Q Consensus        78 N~l   80 (185)
                      |++
T Consensus       156 N~~  158 (418)
T KOG2982|consen  156 NSL  158 (418)
T ss_pred             chh
Confidence            744

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.34  E-value=0.00082  Score=31.27  Aligned_cols=20  Identities=50%  Similarity=0.733  Sum_probs=12.6

Q ss_pred             CCCEEeCCCCcCCCCCchHhh
Q 039243           45 VIESLDLSSNKLTGQIPQQLA   65 (185)
Q Consensus        45 ~L~~L~l~~N~l~~~~p~~~~   65 (185)
                      +|++||+++|+++ .+|..|+
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTT
T ss_pred             CccEEECCCCcCE-eCChhhc
Confidence            3566777777776 5665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.55  E-value=0.0002  Score=53.92  Aligned_cols=77  Identities=17%  Similarity=0.206  Sum_probs=49.8

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      |++.|.+- -....|..++.|..||++.|.+. ..|..++++..+..+++-.|.++ ..|.++...+.++.+++..|.+.
T Consensus        48 d~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   48 DLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             hhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            44444433 22233455566667777777776 67777777777777777777776 66777777777777777776653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.25  E-value=0.01  Score=25.67  Aligned_cols=9  Identities=67%  Similarity=0.900  Sum_probs=3.0

Q ss_pred             ceeeccccc
Q 039243           23 QTLNLSNNN   31 (185)
Q Consensus        23 ~~L~Ls~N~   31 (185)
                      +.|+|++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.20  E-value=0.0024  Score=49.49  Aligned_cols=62  Identities=27%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCch--HhhcCCCCcEEEecCCcCcC
Q 039243           18 SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ--QLAELTSLAFFDVSHNHLRG   82 (185)
Q Consensus        18 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~l~l~~N~l~~   82 (185)
                      .++.|++|.||-|+|+..-|  +..++.|++|+|..|.|. .+.+  -+.++++|+.|.|..|...|
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCccc
Confidence            45666666666666663333  445566666666666665 2222  13355666666666665543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.29  E-value=0.031  Score=26.78  Aligned_cols=14  Identities=43%  Similarity=0.664  Sum_probs=7.7

Q ss_pred             CCCCEEeCCCCcCC
Q 039243           44 TVIESLDLSSNKLT   57 (185)
Q Consensus        44 ~~L~~L~l~~N~l~   57 (185)
                      ++|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.29  E-value=0.031  Score=26.78  Aligned_cols=14  Identities=43%  Similarity=0.664  Sum_probs=7.7

Q ss_pred             CCCCEEeCCCCcCC
Q 039243           44 TVIESLDLSSNKLT   57 (185)
Q Consensus        44 ~~L~~L~l~~N~l~   57 (185)
                      ++|+.|++++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.23  E-value=0.045  Score=48.07  Aligned_cols=60  Identities=25%  Similarity=0.385  Sum_probs=33.1

Q ss_pred             cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCC-CCchHhhcCCCCcEEEecCC
Q 039243           17 ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus        17 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~l~l~~N   78 (185)
                      .++++|..||+|+..++..  ..++.|++|+.|.+.+=.+.. ..-..+.++++|++||+|..
T Consensus       170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            4567777777777776622  445566666666555544431 11123445566666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.09  E-value=0.056  Score=25.85  Aligned_cols=14  Identities=50%  Similarity=0.707  Sum_probs=8.3

Q ss_pred             cccceeeccccccc
Q 039243           20 KGLQTLNLSNNNLR   33 (185)
Q Consensus        20 ~~L~~L~Ls~N~l~   33 (185)
                      ++|+.|+|++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.09  E-value=0.056  Score=25.85  Aligned_cols=14  Identities=50%  Similarity=0.707  Sum_probs=8.3

Q ss_pred             cccceeeccccccc
Q 039243           20 KGLQTLNLSNNNLR   33 (185)
Q Consensus        20 ~~L~~L~Ls~N~l~   33 (185)
                      ++|+.|+|++|.|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            45566666666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=0.0053  Score=47.60  Aligned_cols=72  Identities=26%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcc--cccCCCCCCEEeCCCCcCCCCCch-----HhhcCCCCcEE
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL--TLSNLTVIESLDLSSNKLTGQIPQ-----QLAELTSLAFF   73 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~l~~N~l~~~~p~-----~~~~l~~L~~l   73 (185)
                      |.||-|.|+..-|  |..++.|+.|+|..|.|. .+..  -+.++++|+.|+|..|.-.|.-+.     .+.-+++|+.|
T Consensus        46 LsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL  122 (388)
T KOG2123|consen   46 LSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL  122 (388)
T ss_pred             EEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence            3577888886644  668899999999999998 4443  358899999999999998876654     35567888887


Q ss_pred             Ee
Q 039243           74 DV   75 (185)
Q Consensus        74 ~l   75 (185)
                      |-
T Consensus       123 Dn  124 (388)
T KOG2123|consen  123 DN  124 (388)
T ss_pred             cC
Confidence            63

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=93.57  E-value=0.017  Score=45.95  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             chhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCchHh----h-cCCCCcEEEecCCcCcCC
Q 039243           13 PTSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQQL----A-ELTSLAFFDVSHNHLRGA   83 (185)
Q Consensus        13 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~----~-~l~~L~~l~l~~N~l~~~   83 (185)
                      ...|..+++|++|||..|-++..    +...+..+++|+.+++++..+...-..++    . ..++|+.+.+.+|.++..
T Consensus       206 ~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  206 AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            34567789999999999998732    34456778889999999888874333222    2 357889999999987521


Q ss_pred             CCC-----CCcccccccccccCCCC
Q 039243           84 IPQ-----GTQFSTFANDWFAGNPG  103 (185)
Q Consensus        84 ~p~-----~~~~~~l~~~~~~~n~~  103 (185)
                      --.     ....+.+..+.+++|..
T Consensus       286 a~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  286 AALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHHhcchhhHHhcCCcccc
Confidence            100     01245566677888876

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.23  E-value=0.21  Score=41.19  Aligned_cols=47  Identities=21%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSN   54 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N   54 (185)
                      |++++|.++. +|. +  ..+|+.|.+++ +.++ .+|+.+.  .+|+.|+++++
T Consensus        57 L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         57 LYIKDCDIES-LPV-L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             EEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence            4677776663 341 2  24567777765 3443 5554332  35555555554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.05  E-value=0.0022  Score=48.47  Aligned_cols=86  Identities=22%  Similarity=0.193  Sum_probs=67.1

Q ss_pred             hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCcccccc
Q 039243           15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFA   94 (185)
Q Consensus        15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~   94 (185)
                      .+......+.||++.|++. .+-..|.-++.|..|+++.|.+. ..|..+..+..+.++++..|..+-.+-...+.+...
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence            3556678889999999998 77778888999999999999999 788888888888899999888873333333555555


Q ss_pred             cccccCCC
Q 039243           95 NDWFAGNP  102 (185)
Q Consensus        95 ~~~~~~n~  102 (185)
                      .....+|+
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            55666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.71  E-value=0.12  Score=34.71  Aligned_cols=62  Identities=18%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243           14 TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH   77 (185)
Q Consensus        14 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~   77 (185)
                      .+|.+..+|+.+.+.. .+.......|....+|+.+.+..+ +.......|..+.+++.+.+.+
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            3455666677666664 455455555666666777776664 5434444566665666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.47  E-value=0.048  Score=42.87  Aligned_cols=62  Identities=24%  Similarity=0.352  Sum_probs=41.8

Q ss_pred             CcccceeecccccccC--CCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243           19 LKGLQTLNLSNNNLRG--YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      .+.++.+||.+|.|+.  .+-..+.+|+.|+.|+++.|.+...+...-....+|+.+-+.+..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            4667888888888872  2334467888888999998888743322113455777777776655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=91.94  E-value=0.1  Score=45.96  Aligned_cols=57  Identities=18%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             CcccceeecccccccCC-CcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243           19 LKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH   77 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~   77 (185)
                      ||+|+.|.+++-.+... .-....++++|..||+|+.+++ .+ ..++.+++|+.|.+.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccC
Confidence            45566655555444311 1223345556666666666555 22 3345555555554444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.76  E-value=0.32  Score=32.63  Aligned_cols=70  Identities=20%  Similarity=0.251  Sum_probs=45.4

Q ss_pred             cCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243            7 NFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         7 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      .+...-...|..+++|+.+.+..+ +.......|....+|+.+.+.. .+.......|..+++|+.+++..+
T Consensus        22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            344445567888889999999886 7656667788888999999976 444344556777899999999765

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.02  E-value=0.41  Score=39.49  Aligned_cols=63  Identities=17%  Similarity=0.411  Sum_probs=44.7

Q ss_pred             ccCCcccceeecccccccCCCcccccCCCCCCEEeCCC-CcCCCCCchHhhcCCCCcEEEecCC-cCcCCCCC
Q 039243           16 IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQQLAELTSLAFFDVSHN-HLRGAIPQ   86 (185)
Q Consensus        16 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~l~l~~N-~l~~~~p~   86 (185)
                      +..+.+++.|++++|.|+ .+|.   -..+|+.|.+++ +.++ .+|+.+.  .+|+.|++++| .+. .+|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc
Confidence            344688999999999998 6672   224699999986 6666 6777553  47888888877 444 3443

>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []

Probab=90.96  E-value=0.15  Score=35.54  Aligned_cols=11  Identities=27%  Similarity=0.305  Sum_probs=5.2

Q ss_pred             cccccchhccc
Q 039243          171 QPESNGRRRRH  181 (185)
Q Consensus       171 ~~~~~~r~~~~  181 (185)
                      -|+..+||+.+
T Consensus        43 LPkflqRRssk   53 (158)
T PF11770_consen   43 LPKFLQRRSSK   53 (158)
T ss_pred             hHHHHHhhhhh
Confidence            34444555444

In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=90.17  E-value=0.24  Score=33.61  Aligned_cols=16  Identities=19%  Similarity=0.123  Sum_probs=7.4

Q ss_pred             hhhhHhHHHHHHhhhh
Q 039243          135 WKIVLAGYASGTIIGV  150 (185)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (185)
                      ...+++|++++++..+
T Consensus        66 i~~Ii~gv~aGvIg~I   81 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGII   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHHHH
Confidence            3444555555544433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=89.66  E-value=0.19  Score=40.14  Aligned_cols=68  Identities=24%  Similarity=0.288  Sum_probs=48.6

Q ss_pred             hhccCCcccceeecccccccC----CCcccccCCCCCCEEeCCCCcCCCCC----chHhhcCCCCcEEEecCCcCc
Q 039243           14 TSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSNKLTGQI----PQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        14 ~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ..|...+.|+.+.++.|.|..    .+-..|..+++|+.|||..|-++..-    ...+..+++|+.+++++..++
T Consensus       179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            346667888899999988752    12345677889999999999887432    234556677888888887765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.63  E-value=0.074  Score=24.91  Aligned_cols=12  Identities=50%  Similarity=0.822  Sum_probs=4.2

Q ss_pred             CCCEEeCCCCcC
Q 039243           45 VIESLDLSSNKL   56 (185)
Q Consensus        45 ~L~~L~l~~N~l   56 (185)
                      +|++|++++|+|
T Consensus         3 ~L~~L~l~~n~i   14 (24)
T PF13516_consen    3 NLETLDLSNNQI   14 (24)
T ss_dssp             T-SEEE-TSSBE
T ss_pred             CCCEEEccCCcC
Confidence            344444444443

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.40  E-value=0.26  Score=23.79  Aligned_cols=17  Identities=35%  Similarity=0.753  Sum_probs=8.8

Q ss_pred             CCCEEeCCCCcCCCCCch
Q 039243           45 VIESLDLSSNKLTGQIPQ   62 (185)
Q Consensus        45 ~L~~L~l~~N~l~~~~p~   62 (185)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4555555555555 4443

>PF15050 SCIMP: SCIMP protein

Probab=88.61  E-value=0.26  Score=32.97  Aligned_cols=24  Identities=17%  Similarity=0.400  Sum_probs=11.3

Q ss_pred             hhhhHhHHHHHHhhhhhhhhhhhc
Q 039243          135 WKIVLAGYASGTIIGVVLGYIFCT  158 (185)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      |.+++++++++-+++.++++++|+
T Consensus         9 WiiLAVaII~vS~~lglIlyCvcR   32 (133)
T PF15050_consen    9 WIILAVAIILVSVVLGLILYCVCR   32 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544444444444444443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.28  E-value=0.48  Score=22.86  Aligned_cols=14  Identities=57%  Similarity=0.759  Sum_probs=8.4

Q ss_pred             CCCCEEeCCCCcCC
Q 039243           44 TVIESLDLSSNKLT   57 (185)
Q Consensus        44 ~~L~~L~l~~N~l~   57 (185)
                      .+|+.|+++.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45566666666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.23  E-value=0.53  Score=36.77  Aligned_cols=41  Identities=24%  Similarity=0.436  Sum_probs=27.1

Q ss_pred             cCCCCCCEEeCCCCcCCCCCchHh----hcCCCCcEEEecCCcCc
Q 039243           41 SNLTVIESLDLSSNKLTGQIPQQL----AELTSLAFFDVSHNHLR   81 (185)
Q Consensus        41 ~~l~~L~~L~l~~N~l~~~~p~~~----~~l~~L~~l~l~~N~l~   81 (185)
                      -.++.|+..+||.|.+....|..+    +.-+.|.+|.+++|.+.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            345777777777777765555543    34456777777777664

>PTZ00046 rifin; Provisional

Probab=87.58  E-value=0.32  Score=39.01  Aligned_cols=7  Identities=14%  Similarity=0.515  Sum_probs=2.7

Q ss_pred             hhhhccc
Q 039243          154 YIFCTRK  160 (185)
Q Consensus       154 ~~~~~~~  160 (185)
                      +++++||
T Consensus       335 YLILRYR  341 (358)
T PTZ00046        335 YLILRYR  341 (358)
T ss_pred             HHHHHhh
Confidence            3344333

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=87.39  E-value=0.33  Score=32.93  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=15.6

Q ss_pred             hhhHhHHHHHHhhhhhhhhhhhc
Q 039243          136 KIVLAGYASGTIIGVVLGYIFCT  158 (185)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~  158 (185)
                      ...++++++|++++++.++++..
T Consensus        63 ~~~i~~Ii~gv~aGvIg~Illi~   85 (122)
T PF01102_consen   63 EPAIIGIIFGVMAGVIGIILLIS   85 (122)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeehhHHHHHHHHHHHHHHH
Confidence            45677778888888777766543

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>TIGR01477 RIFIN variant surface antigen, rifin family

Probab=87.31  E-value=0.35  Score=38.75  Aligned_cols=8  Identities=13%  Similarity=0.264  Sum_probs=3.1

Q ss_pred             hhhhhccc
Q 039243          153 GYIFCTRK  160 (185)
Q Consensus       153 ~~~~~~~~  160 (185)
                      ++++++||
T Consensus       329 IYLILRYR  336 (353)
T TIGR01477       329 IYLILRYR  336 (353)
T ss_pred             HHHHHHhh
Confidence            33344433

This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=84.62  E-value=0.4  Score=33.65  Aligned_cols=22  Identities=14%  Similarity=0.221  Sum_probs=9.6

Q ss_pred             hhhHhHHHHHHhhhhhhhhhhh
Q 039243          136 KIVLAGYASGTIIGVVLGYIFC  157 (185)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~  157 (185)
                      ..+++|+++++++++++++++|
T Consensus        52 IGvVVGVGg~ill~il~lvf~~   73 (154)
T PF04478_consen   52 IGVVVGVGGPILLGILALVFIF   73 (154)
T ss_pred             EEEEecccHHHHHHHHHhheeE
Confidence            3344554444454433333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain

Probab=83.38  E-value=0.77  Score=29.80  Aligned_cols=19  Identities=16%  Similarity=0.092  Sum_probs=8.7

Q ss_pred             hhhHhHHHHHHhhhhhhhh
Q 039243          136 KIVLAGYASGTIIGVVLGY  154 (185)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~  154 (185)
                      +.+++|+++++++..++++
T Consensus        17 W~~LVGVv~~al~~SlLIa   35 (102)
T PF15176_consen   17 WPFLVGVVVTALVTSLLIA   35 (102)
T ss_pred             cHhHHHHHHHHHHHHHHHH
Confidence            3445555554444444333

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.46  E-value=1.3  Score=21.59  Aligned_cols=14  Identities=50%  Similarity=0.672  Sum_probs=9.2

Q ss_pred             CCCCEEeCCCCcCC
Q 039243           44 TVIESLDLSSNKLT   57 (185)
Q Consensus        44 ~~L~~L~l~~N~l~   57 (185)
                      ++|++|+|++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35667777777665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N   G IP  I S+  L  LNL +N++ G IP  + +L  +  LDLSSNKL G+IPQ ++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEA 118
            LT L   D+S+N+L G IP+  QF TF    F  NPGLCG PL  +C  S A
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N   G IP  I S+  L  LNL +N++ G IP  + +L  +  LDLSSNKL G+IPQ ++
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEA 118
            LT L   D+S+N+L G IP+  QF TF    F  NPGLCG PL  +C  S A
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           NN VG IP +IA L  L  L +++ N+ G IP  LS +  + +LD S N L+G +P  ++
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 66  ELTSLAFFDVSHNHLRGAIPQ 86
            L +L       N + GAIP 
Sbjct: 147 SLPNLVGITFDGNRISGAIPD 167

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N + +I ++++ L  LQ LN S+N +    PL  +NLT +E LD+SSNK++      
Sbjct: 136 LSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSD--ISV 190
Query: 64  LAELTSLAFFDVSHNHLRGAIPQG 87
           LA+LT+L     ++N +    P G
Sbjct: 191 LAKLTNLESLIATNNQISDITPLG 214

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  171 bits (435), Expect = 4e-50
 Identities = 51/117 (43%), Positives = 67/117 (57%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
            N   G IP  I S+  L  LNL +N++ G IP  + +L  +  LDLSSNKL G+IPQ +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

Query: 65  AELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPA 121
           + LT L   D+S+N+L G IP+  QF TF    F  NPGLCG PL     ++    A
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (260), Expect = 2e-26
 Identities = 34/82 (41%), Positives = 47/82 (57%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
            N   G IP+S+ SL  L+ L L  N L G IP  L  +  +E+L L  N LTG+IP  L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

Query: 65  AELTSLAFFDVSHNHLRGAIPQ 86
           +  T+L +  +S+N L G IP+
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 3e-25
 Identities = 32/86 (37%), Positives = 50/86 (58%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + L +N F G+IP ++++   L +L+LS N L G IP +L +L+ +  L L  N L G+I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQ 86
           PQ+L  + +L    +  N L G IP 
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 3e-25
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           +IL  N+  GEIP+ +++   L  ++LSNN L G IP  +  L  +  L LS+N  +G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQG 87
           P +L +  SL + D++ N   G IP  
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 3e-25
 Identities = 36/83 (43%), Positives = 50/83 (60%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N   GEIP  +  +K L+TL L  N+L G IP  LSN T +  + LS+N+LTG+IP+
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
            +  L +LA   +S+N   G IP
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIP 531

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.1 bits (245), Expect = 3e-24
 Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 1   IILLDNNFVGEIPTSI--ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG 58
           + L  NNF G I  ++       LQ L L NN   G IP TLSN + + SL LS N L+G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 59  QIPQQLAELTSLAFFDVSHNHLRGAIPQ 86
            IP  L  L+ L    +  N L G IPQ
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 9e-24
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIP 61
           L  N+F G +P    S   L++L LS+NN  G +P+ TL  +  ++ LDLS N+ +G++P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

Query: 62  QQLAELT-SLAFFDVSHNHLRGAIPQG 87
           + L  L+ SL   D+S N+  G I   
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.0 bits (232), Expect = 1e-22
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 1   IILLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           + L +N F GEIP  ++ +   L  L+LS N+  G +P    + +++ESL LSSN  +G+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 60  IPQQ-LAELTSLAFFDVSHNHLRGAIP 85
           +P   L ++  L   D+S N   G +P
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 92.7 bits (231), Expect = 2e-22
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLS-NLTVIESLDLSSNKLTGQIP 61
           +  N FVG IP     LK LQ L+L+ N   G IP  LS     +  LDLS N   G +P
Sbjct: 254 ISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQ 86
                 + L    +S N+  G +P 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPM 336

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 91.5 bits (228), Expect = 4e-22
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + +  N   G++   ++    L+ L++S+NN    IP  L + + ++ LD+S NKL+G  
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIP 85
            + ++  T L   ++S N   G IP
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.4 bits (225), Expect = 1e-21
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + +  NNF   IP  +     LQ L++S N L G     +S  T ++ L++SSN+  G I
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIP 85
           P     L SL +  ++ N   G IP
Sbjct: 264 PPLP--LKSLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.7 bits (218), Expect = 9e-21
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 5   DNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTV-IESLDLSSNKLTGQIPQ 62
            NNF GE+P  ++  ++GL+ L+LS N   G +P +L+NL+  + +LDLSSN  +G I  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 63  QLAE--LTSLAFFDVSHNHLRGAIP 85
            L +    +L    + +N   G IP
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 3e-20
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 3   LLDNNFVGEIPTSIA---SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           L  N+  G              L+ L +S N + G + +  S    +E LD+SSN  +  
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTG 215

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIPQ 86
           IP  L + ++L   D+S N L G   +
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 4e-20
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +N   GEIP  I  L+ L  L LSNN+  G IP  L +   +  LDL++N   G IP 
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
            + + +      ++ N + G   
Sbjct: 557 AMFKQS----GKIAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 2e-19
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 3   LLDNNFVGEIPT--SIASLKGLQTLNLSNNNLRGYIPLT-LSNLTVIESLDLSSNKLTGQ 59
           L  N+  G + T  S+ S  GL+ LN+S+N L     ++    L  +E LDLS+N ++G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 60  IPQQLAE---LTSLAFFDVSHNHLRGAIP 85
                        L    +S N + G + 
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP--LTLSNLTVIESLDLSSNKLTGQI 60
           L +++  G +         L +L+LS N+L G +    +L + + ++ L++SSN L    
Sbjct: 84  LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142

Query: 61  P-QQLAELTSLAFFDVSHNHLRGAIP 85
                 +L SL   D+S N + GA  
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANV 168

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 4e-18
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNN--NLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           +  N   G+    I +    +  + + N    +G     L+ L+     +++S    G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQ 86
                   S+ F D+S+N L G IP+
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPK 650

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.0 bits (198), Expect = 5e-18
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP--QQ 63
           N     + +S+ SL GL++L LSN+++ G +         + SLDLS N L+G +     
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           L   + L F +VS N L     
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 7e-17
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + L +N+F G IP  +   + L  L+L+ N   G IP  +       S  +++N + G+ 
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKR 574

Query: 61  PQQLAELTSLAFFDVSHN--HLRGAIP 85
              +           + N    +G   
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRS 601

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 22  LQTLNLSNNNLR---GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78
           + +++LS+  L      +  +L +LT +ESL LS++ + G +        SL   D+S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 79  HLRGAIPQGTQFS 91
            L G +   T   
Sbjct: 111 SLSGPVTTLTSLG 123

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  134 bits (339), Expect = 7e-39
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + L  N   G+      S K  Q ++L+ N+L   +   +     +  LDL +N++ G +
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL 260

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLS 110
           PQ L +L  L   +VS N+L G IPQG     F    +A N  LCG PL 
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (264), Expect = 6e-28
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           NN VG IP +IA L  L  L +++ N+ G IP  LS +  + +LD S N L+G +P  ++
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 66  ELTSLAFFDVSHNHLRGAIP 85
            L +L       N + GAIP
Sbjct: 147 SLPNLVGITFDGNRISGAIP 166

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  101 bits (253), Expect = 2e-26
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           +   N  G IP  ++ +K L TL+ S N L G +P ++S+L  +  +    N+++G IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 63  QLAELTSLA-FFDVSHNHLRGAIPQ 86
                + L     +S N L G IP 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.7 bits (226), Expect = 2e-22
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 1   IILLDNNFVGE--IPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLT 57
           + L   N      IP+S+A+L  L  L +   NNL G IP  ++ LT +  L ++   ++
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 58  GQIPQQLAELTSLAFFDVSHNHLRGAIP 85
           G IP  L+++ +L   D S+N L G +P
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRG--YIPLTLSNLTVIESLDLSS-NKLTGQIP 61
           +  ++G +  +      +  L+LS  NL     IP +L+NL  +  L +   N L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 62  QQLAELTSLAFFDVSHNHLRGAIP 85
             +A+LT L +  ++H ++ GAIP
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ--IPQQLAELTSL 70
          PT+++S     T +  N    G +  T +    + +LDLS   L     IP  LA L  L
Sbjct: 21 PTTLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78

Query: 71 AFFDVSH-NHLRGAIP 85
           F  +   N+L G IP
Sbjct: 79 NFLYIGGINNLVGPIP 94

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 6/111 (5%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N F          L  L+ ++L  NNL        +N   ++SL+L  N +T    +   
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 66  E-LTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL-----CGEPLS 110
               +L   D+  N           F  + N+     P L     C  P  
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  +   G     +  L  L  LNL +N           +L  ++ +DL  N L      
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQ--GTQFSTFANDWFAGNPGLC 105
                 SL   ++  N +     +  G  F          NP  C
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 21/84 (25%), Positives = 30/84 (35%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           +  N      P     L  L+ LNL +N L      T +  T +  L L SN +      
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQ 86
              +  +L   D+SHN L      
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + L  N        + A    L  L+L +N+++            + +LDLS N L+   
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQ 86
                +L +L    +S+N ++    +
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 1/92 (1%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIESLDLSSNKLTGQIPQQ 63
            N        + + L  L+ L+L  N +   +       L  I  + LS NK        
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
            A + SL    +    L+      + F    N
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L+ N+            K L TL+LS+N L      T   L  ++ L LS+NK+     +
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 63  QLA--ELTSLAFFDVSHNHLRGAIP 85
           +L     +SL   ++S N ++   P
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 5   DNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG--QIP 61
            N    E+       L+ +  + LS N        + + +  ++ L L    L      P
Sbjct: 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQ 86
                L +L   D+S+N++      
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNN---------NLRGYIPLTLSNLTVIESLDL 51
             L  NN       S+  L  ++ LNL  +         +L      +   L  +E L++
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 336

Query: 52  SSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
             N + G        L +L +  +S++           F + A+
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 5   DNNFVGEIPTSIASLKG--LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           ++       T+   LK   L  L+LS NNL      + + L  +E   L  N +      
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
            L  L ++ + ++  +  + +I          +  F     L
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 4  LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            +  + ++P  +     +  LNL++N LR       +  + + SLD+  N ++   P+ 
Sbjct: 11 CSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 64 LAELTSLAFFDVSHNHLRGAIP 85
            +L  L   ++ HN L     
Sbjct: 69 CQKLPMLKVLNLQHNELSQLSD 90

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 1e-13
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 4   LDNN---FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT--- 57
           L       V   P+    L+ L  L+LSNNN+       L  L  +E LDL  N L    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 58  -----GQIPQQLAELTSLAFFDVSHNHLRGAIPQ 86
                G     L  L+ L   ++  N       +
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 16/107 (14%)

Query: 4   LDNNFVGEIPTSIASLKG-----LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG 58
           L N+F      +  +        L  LNL+ N +        S L  +E LDL  N++  
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 59  QIPQQ-LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
           ++  Q    L ++    +S+N                 + FA  P L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTR----------NSFALVPSL 456

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 5   DNNFVGEIPTSIA---SLKGLQTLNLSNNNLRGYIPLTLSNL--TVIESLDLSSNKLTGQ 59
           +      +   +    +   ++ L+LSN+ L      T   L  T +  LDLS N L   
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIP 85
                A L  L +F + +N+++    
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 1   IILLDNNFVGEIPTSIASLKG--LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG 58
           ++L +N         +       L+ L LS+N ++ + P     +  +  L L++ +L  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 59  QIPQQLAE---LTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
            + ++L      TS+    +S++ L          +TF  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSN-----TTFLG 244

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 22 LQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80
           +  + S+  L   +P  L +N+T    L+L+ N+L           + L   DV  N +
Sbjct: 6  HEVADCSHLKLTQ-VPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 81 RGAIPQ 86
              P+
Sbjct: 62 SKLEPE 67

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 5   DNNFVGEI-PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            N+F     P     L+ L  L+LS   L    P   ++L+ ++ L++S N         
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 64  LAELTSLAFFDVSHNHLRGAIPQ 86
              L SL   D S NH+  +  Q
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 9e-18
 Identities = 17/83 (20%), Positives = 30/83 (36%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L           +  SL  L TL L+ N ++       S L+ ++ L      L      
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
            +  L +L   +V+HN ++    
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 16/81 (19%), Positives = 28/81 (34%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N        S  S   LQ L+LS   ++        +L+ + +L L+ N +        +
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 66  ELTSLAFFDVSHNHLRGAIPQ 86
            L+SL        +L      
Sbjct: 98  GLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 1   IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           +    +N       S+  SL+ L  L++S+ + R       + L+ +E L ++ N     
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 60  I-PQQLAELTSLAFFDVSHNHLRGAIPQ 86
             P    EL +L F D+S   L    P 
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-Q 59
           +IL  N        + + L  LQ L     NL       + +L  ++ L+++ N +   +
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIPQ 86
           +P+  + LT+L   D+S N ++     
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N V  + ++   L+ L+ L+  ++NL+         +L  +  LD+S          
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
               L+SL    ++ N  +    
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIP 61
            ++ N        I  LK L+ LN+++N ++ + +P   SNLT +E LDLSSNK+     
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 62  QQLAELTSLAFF----DVSHNHLRGAIP 85
             L  L  +       D+S N +    P
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.4 bits (173), Expect = 9e-15
 Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNL--RGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           L   +  G    S   L  L+ L+LS N L  +G    +    T ++ LDLS N +   +
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
                 L  L   D  H++L+                            N  F G   L
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
            ++ NF  +IP ++      + L+LS N LR     +  +   ++ LDLS  ++      
Sbjct: 14  CMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
               L+ L+   ++ N ++                F+G   L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLAL----------GAFSGLSSL 102

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 5e-10
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 6   NNFVGEIPTSIASLKGLQ----TLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           N       T +  L  +     +L+LS N +    P     +  +  L L +N  +  + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVM 217

Query: 62  QQ-LAELTSLAFFDVSHNHLRGAIP-QGTQFSTFAN 95
           +  +  L  L    +     R     +    S    
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           + ++ +I      L  + + +L +  +        S     + L+L + K       +L 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLK 325

Query: 66  ELTSLAFFDVSHNHL 80
            L  L F      + 
Sbjct: 326 SLKRLTFTSNKGGNA 340

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT--GQIP 61
           L N   G+ PT    LK L+ L  ++N   G    +  +L  +E LDLS N L+  G   
Sbjct: 311 LVNCKFGQFPTL--KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 62  QQLAELTSLAFFDVSHNHLRG 82
           Q     TSL + D+S N +  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 10/95 (10%)

Query: 1   IILLDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPL------TLSNLTVIESLDLSS 53
           + L +N     +  T I  L GL+   L     R    L       L  L  +   +   
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 54  NKL---TGQIPQQLAELTSLAFFDVSHNHLRGAIP 85
             L      I      LT+++ F +    +     
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLR------GYIPLTLSNLTVIESLDLSSNKLTGQ 59
            N         ++L+GL  L +    L         I    + LT + S  L S  +   
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 60  IPQQLAELTSLAFFDVSHNHLRG 82
                +        ++ +     
Sbjct: 298 KD--FSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIESLDLSSNKLTGQIP 61
           L  N      P +   ++ L  L L NN     +    +  L  +E   L   +   +  
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 62  QQ---LAELTSLAFFDVSHNHLR 81
            +    + L  L    +    L 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLA 265

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 4e-18
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-- 58
                         S ++LK L  + L N      +P  L +L  ++SL+++ N+     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 59  -------QIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFS 91
                  ++         +  F + +N+L    P      
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ 570

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 3e-16
 Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRG-------------------YIPLTLSN 42
           I    N +  I  +I  L  LQ +  +N+                          L+ SN
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489

Query: 43  LTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAND 96
           L  +  ++L +     Q+P  L +L  L   +++ N    A      ++  A+D
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 3e-14
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNL------SNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57
           +  N     PT   +   L+   +        N +    P  ++    +  L + SN + 
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 58  GQIPQQLAELTSLAFFDVSHNHL 80
             + ++L     L   D++ N  
Sbjct: 820 K-VDEKL--TPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 12/84 (14%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 4   LDNNFVGEIP--TSIASLKGLQTLNLSNNNLRGYIP-----LTLSNLTVIESLDLSSNKL 56
             +N +  IP   +  S+  + +++ S N +          +         ++ LS N++
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 57  TGQIPQQLAELTSLAFFDVSHNHL 80
                +  A  + ++   +S+N +
Sbjct: 686 QKFPTELFATGSPISTIILSNNLM 709

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 4e-13
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLR-------GYIPLTLSNLTVIESLDLSSNK 55
           L  N          A+   + T+ LSNN +                N  ++ ++DL  NK
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 56  LTGQIPQQLA--ELTSLAFFDVSHNHLRGAIPQG 87
           LT  +        L  L+  DVS+N      P  
Sbjct: 740 LTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 14/105 (13%)

Query: 4   LDNNFVGEIPTSIAS------LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57
              N +G    +I+            T+ LS N ++ +     +  + I ++ LS+N +T
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 58  -------GQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
                              L   D+  N L   +    + +T   
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 4   LDNNFVGEIPTS--IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           +  N + E P S  +  +  L  L+  +N +R  +         +  L L  N++  +IP
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIE-EIP 611

Query: 62  QQL-AELTSLAFFDVSHNHLRGAIPQGTQFS 91
           +   A    +     SHN L+  IP      
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ- 62
             +N V  +  +  +   L  L L  N +        +    +E L  S NKL   IP  
Sbjct: 580 CVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNI 637

Query: 63  -QLAELTSLAFFDVSHNHLRGAIPQ 86
                +  +   D S+N +      
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
               N  + + PT I +   L  L + +N++R         L +   LD++ N       
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDV 844

Query: 62  QQLAELTSLAFFDVSHNHLR 81
             +        + + ++  +
Sbjct: 845 TSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L      G +P +I  L  L+ L+   ++      L        +  +   +++     +
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 63  -QLAELTSLAFFDVSHNHLRG 82
             L     L   D+  + +  
Sbjct: 390 MFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 10/83 (12%), Positives = 30/83 (36%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           + +  +    + +   +  L+L+    +G +P  +  LT ++ L   ++  T        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 66  ELTSLAFFDVSHNHLRGAIPQGT 88
           E  +    +   + +R    +  
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMF 391

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I +       +    +     LQ     N  ++     +  +L   + +   +N++T  I
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF-I 440

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQ 86
            + +  LT L     +++        
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIA 466

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 10/62 (16%), Positives = 20/62 (32%)

Query: 24  TLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGA 83
             N   +       + L N   +  L L+     G++P  + +LT L       +    +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 84  IP 85
             
Sbjct: 363 GR 364

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 10/104 (9%), Positives = 26/104 (25%), Gaps = 20/104 (19%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG---- 58
           +  N  +  I            +    N +   I   +  LT ++ +  +++  T     
Sbjct: 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIA 466

Query: 59  ---------------QIPQQLAELTSLAFFDVSHNHLRGAIPQG 87
                                + L  L   ++ +      +P  
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 4e-18
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY--------IPLTLSNLTVIESLDLSSN 54
           + +   + ++PT + +L  +Q +N++ N                       I+ + +  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 55  KL-TGQIPQQLAELTSLAFFDVSHNHLRGAIP 85
            L T  +   L ++  L   +  +N L G +P
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 3e-16
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG----- 58
           +D      +  +      + ++NLSNN +  +     S  + + S++L  N LT      
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 59  --QIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
                +       L   D+  N L   +    + +T   
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 5e-16
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
               N  + E P  I     L  L + +N++R        N++V   LD+  N       
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISV---LDIKDNPNISIDL 604

Query: 62  QQLAELTSLAFFDVSHNHLR 81
             +        + + ++  +
Sbjct: 605 SYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 7e-16
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSN------NNLRGYIPLTLSNLTVIESLDLSSNKLT 57
           L  N   + PT   +   L+   + N      N      P  ++    +  L + SN + 
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 58  GQIPQQLAELTSLAFFDVSHNHLRGAIPQG 87
             + +++    +++  D+  N         
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 19/113 (16%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-------------------IPLTLSN 42
           I   +N +  +  ++  L  L+   + N+                          L   N
Sbjct: 188 IGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247

Query: 43  LTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
           L  +  +++ +     ++P  L  L  +   +V+ N           +   A+
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 4   LDNNFVGEIP--TSIASLKGLQTLNLSNNNLRGY-------IPLTLSNLTVIESLDLSSN 54
             +N +  IP      S+  +  ++ S N +          +  T      + S++LS+N
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 55  KLTGQIPQQLAELTSLAFFDVSHNHLRG 82
           +++    +  +  + L+  ++  N L  
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 9e-15
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRG-------YIPLTLSNLTVIESLDLSS 53
           I L +N          ++   L ++NL  N L                N  ++ S+DL  
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

Query: 54  NKLTGQIPQQLA--ELTSLAFFDVSHNHLRGAIPQG 87
           NKLT  +        L  L   D+S+N      P  
Sbjct: 498 NKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIP 61
                   +        + +Q + +  NNL+   +  +L  +  +  L+   N+L G++P
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQ 86
                   LA  ++++N +      
Sbjct: 348 A-FGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
            L N   G++P +  S   L +LNL+ N +             +E+L  + NKL   IP 
Sbjct: 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPN 394

Query: 63  --QLAELTSLAFFDVSHNHLRGAIP 85
                 ++ ++  D S+N +     
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 7e-13
 Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSNKLTG 58
           L      G +P +I  L  L+ L L ++  +     + P  +S     E           
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 59  QIPQQLA--ELTSLAFFDVSHNHLRGAIPQGTQFST 92
                    + + L    ++ +  + +I + ++ + 
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 7/112 (6%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ----IP 61
           + +  +   S+ S   +  L+L      G +P  +  LT +E L L S+          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQG---TQFSTFANDWFAGNPGLCGEPLS 110
           + ++   S         H +           FS    D    +P       S
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 5e-12
 Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 3   LLDNNFVGEIPTSIASLK--GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
            +  ++               L    ++++  +  I  +         +   SN +T  +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIP 85
            + +  LT L  F + ++       
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI 223

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 9/62 (14%), Positives = 23/62 (37%)

Query: 24  TLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGA 83
             N   +       ++L++   +  L L     +G++P  + +LT L    +  +  +  
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 84  IP 85
             
Sbjct: 121 ER 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
                     +   L  L  L L+ N ++ + P + S LT +E+L     KL       +
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124

Query: 65  AELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
            +L +L   +V+HN +         FS   N
Sbjct: 125 GQLITLKKLNVAHNFIHS-CKLPAYFSNLTN 154

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
                        +L  LQ LN+S+NNL        + L  + +LD S N++        
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 65  AELTSLAFFDVSHNHLRGAIPQGTQFSTFAND 96
               SLAFF++++N +   I +  +F  +  +
Sbjct: 542 HFPKSLAFFNLTNNSVA-CICEHQKFLQWVKE 572

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 17/80 (21%), Positives = 26/80 (32%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           N        S ++   LQ L+LS   +          L  + +L L+ N +    P   +
Sbjct: 42  NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101

Query: 66  ELTSLAFFDVSHNHLRGAIP 85
            LTSL         L     
Sbjct: 102 GLTSLENLVAVETKLASLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIESLDLSSNKLTGQIP 61
           +   N   +       L  L TL ++ N+ +        +N T +  LDLS  +L     
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 62  QQLAELTSLAFFDVSHNHLRGAIP 85
                L  L   ++SHN+L     
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 9e-14
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 5   DNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            N+F     +++ A+   L  L+LS   L          L  ++ L++S N L       
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 64  LAELTSLAFFDVSHNHLRG 82
             +L SL+  D S N +  
Sbjct: 517 YNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 16/117 (13%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N    +  +   L+ LQ L+  ++ L+         +L  +  LD+S          
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
               LTSL    ++ N  +                      Q    +   F     L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-12
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-Q 59
           +IL  N      P S + L  L+ L      L       +  L  ++ L+++ N +   +
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 60  IPQQLAELTSLAFFDVSHNHLRG 82
           +P   + LT+L   D+S+N+++ 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 12/101 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             +  + ++P  I S    + ++LS N L+     + SN + ++ LDLS  ++     + 
Sbjct: 18  CMDQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
              L  L+   ++ N +           +F+   F+G   L
Sbjct: 76  WHGLHHLSNLILTGNPI----------QSFSPGSFSGLTSL 106

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNL--TVIESLDLSSNKLTGQIP 61
           L  N  G I     +L  L  L+LS N L      + S+L    +  LDLS N     + 
Sbjct: 335 LTMN-KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGT 88
                L  L   D  H+ L+       
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 4   LDNNFVGEI--PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLT----VIESLDLSSNKLT 57
           + +NF+     P   ++L  L  ++LS N ++      L  L     V  SLD+S N + 
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 58  GQIPQQLAELTSLAFFDVSHNHLRGAIPQGT 88
             I  Q  +   L    +  N     I +  
Sbjct: 195 -FIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L    +  +   +      Q+L++    L+ +  L L  L     L L+ NK +  I  +
Sbjct: 292 LAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS---LTLTMNKGS--ISFK 345

Query: 64  LAELTSLAFFDVSHNHLRG 82
              L SL++ D+S N L  
Sbjct: 346 KVALPSLSYLDLSRNALSF 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +    + + PT    L  L++L L+ N     I      L  +  LDLS N L+      
Sbjct: 314 IIRCQLKQFPT--LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 64  LAEL--TSLAFFDVSHNHLR 81
            ++L   SL   D+S N   
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 4/83 (4%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQT--LNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
              + N     P+ +  L  +      L+  N      +    L  + ++ L+   +   
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY- 299

Query: 60  IPQQLAELTSLAFFDVSHNHLRG 82
             + + +        +    L+ 
Sbjct: 300 -LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 16/99 (16%), Positives = 26/99 (26%), Gaps = 7/99 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIESLDLSSNKLTGQI-- 60
           +  N +  I         L  L L  N     I    L NL  +    L   +   +   
Sbjct: 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 61  ----PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
               P  +  L  +   +    +         +F   AN
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.2 bits (175), Expect = 4e-15
 Identities = 15/84 (17%), Positives = 24/84 (28%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L           +  S   L TL L+ N L       LS    ++ L      ++     
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQ 86
            L    +L    +  NH+      
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI- 60
           + L    + E+P+ +  L  L+ L LS N       ++ SN   +  L +  N    ++ 
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFS 91
              L  L +L   D+SH+ +  +     Q  
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 13/84 (15%), Positives = 27/84 (32%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
              N       T+ + L  L  L+L+   +      T  +   +++L L++N L      
Sbjct: 40  FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQ 86
            L+   +L         +      
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 5e-13
 Identities = 16/78 (20%), Positives = 29/78 (37%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
            N  +    T+++  K L+ L      +     + L N   +ESL L SN ++     + 
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 65  AELTSLAFFDVSHNHLRG 82
                L   D  +N +  
Sbjct: 150 FPTEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLT-LSNLTVIESLDLSSNKLTGQ 59
           + L  N  +     +      L+ L+L+   L+     +   NL +++ L+LS + L   
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
             Q    L +L   ++  NH      Q  + ++   
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQ--KTNSLQT 474

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            +N  + EIP ++      + L  S N L      T S L  +  LDL+  ++       
Sbjct: 19  CENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
                 L    ++ N L                  +G   L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAE----------TALSGPKAL 107

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
            +           + + K L++L L +N++             ++ LD  +N +     +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

Query: 63  QLAELTSLA--FFDVSHNHLRGAIPQGTQFSTFANDWFAGN 101
            ++ L        +++ N + G  P     + F +  F G 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 5   DNNFVGEIPTSIASLKG---LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
            N+F         SL+    L+ L LS  +L        ++L ++  +DLS N+LT    
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQ 86
           + L+ L  + + +++ NH+   +P 
Sbjct: 518 EALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 3   LLDNNFVGEIPTSIASLKG--LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
             D +     P     L    ++++NL  +        T    + ++ LDL++  L+ ++
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGT 88
           P  L  L++L    +S N     + Q +
Sbjct: 294 PSGLVGLSTLKKLVLSANKFEN-LCQIS 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 5   DNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
                 +   S   +L  L+ LNLS++ L          L  ++ L+L  N       Q+
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 64  ---LAELTSLAFFDVSHNHLRGAIPQGT 88
              L  L  L    +S   L   I Q  
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSS-IDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 9e-12
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 4   LDNN---FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           L ++           + +L  LQ+LNLS N               +E LDL+  +L  + 
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 61  PQ-QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
            Q     L  L   ++SH+ L             +   F G P L
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLL----------DISSEQLFDGLPAL 451

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 1   IILLDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTV--IESLDLSSNKL 56
           +       +  I   +   +++ L      + +     P     L    +ES++L  +  
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 57  TGQIPQQLAELTSLAFFDVSHNHLR 81
                      + L   D++  HL 
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG 58
            N        +++ LKG+  LNL++N++   +P  L  L+   +++L  N L  
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           + ++ + +   S+  S   ++ L+LS N L       L+  T +E L+LSSN L      
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL 74

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQ 89
            L  L++L   D+++N+++  +  G  
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELLVGPS 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQ 62
             NN +  +  S    +G + + L+NN +     L     + ++ LDL  N++      +
Sbjct: 106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFS 91
             A   +L   ++ +N +   +     F+
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQVVFA 191

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 15/74 (20%), Positives = 31/74 (41%)

Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71
          I     +    +   +++++L+  +     +   ++ LDLS N L+      LA  T L 
Sbjct: 2  IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 72 FFDVSHNHLRGAIP 85
            ++S N L   + 
Sbjct: 62 LLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 14  TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFF 73
             +     ++TL+ +NNN+               ++ L++NK+T          + + + 
Sbjct: 93  QELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 74  DVSHNHLRGAIPQGTQFSTFAN 95
           D+  N +   +      ++   
Sbjct: 150 DLKLNEID-TVNFAELAASSDT 170

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 8e-09
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N +  +     S  G+  ++L NN L   I   L     +E  DL  N       + 
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 64  L 64
            
Sbjct: 257 F 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRG-YIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L +N               +Q L+L  N +         ++   +E L+L  N +   + 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 62  QQLAELTSLAFFDVSHNHLR 81
            Q+     L   D+S N L 
Sbjct: 186 GQVV-FAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 6/70 (8%), Positives = 17/70 (24%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           ++    +    +     +    + ++      R  I           +L+     L  Q+
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 61  PQQLAELTSL 70
                    L
Sbjct: 377 SNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L NN +  I  ++   + L+  +L  N       L            ++   +     Q 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 64  LAELTSLAFFDVSHNHLR 81
             E T             
Sbjct: 280 EEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.8 bits (161), Expect = 3e-13
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           + ++ + +   S+  S   ++ L+LS N L       L+  T +E L+LSSN L  +   
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL- 74

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQ 89
            L  L++L   D+++N+++  +  G  
Sbjct: 75  DLESLSTLRTLDLNNNYVQ-ELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L  NF+ ++   +     L+TL+LS+N L  ++     +   +  + L +NKL   I + 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 64  LAELTSLAFFDVSHNHLR 81
           L    +L  FD+  N   
Sbjct: 233 LRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQ 62
             NN +  +  S    +G + + L+NN +     L     + ++ LDL  N++      +
Sbjct: 106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFS 91
             A   +L   ++ +N +   +     F+
Sbjct: 164 LAASSDTLEHLNLQYNFIY-DVKGQVVFA 191

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 15/70 (21%), Positives = 30/70 (42%)

Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71
          I     +    +   +++++L+  +     +   ++ LDLS N L+      LA  T L 
Sbjct: 2  IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 72 FFDVSHNHLR 81
            ++S N L 
Sbjct: 62 LLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 4   LDNNFVGEIP--TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L  N +  +      AS   L+ LNL  N +   +         +++LDLSSNKL   + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSSNKLA-FMG 207

Query: 62  QQLAELTSLAFFDVSHNHLR 81
            +      + +  + +N L 
Sbjct: 208 PEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N +  +     S  G+  ++L NN L   I   L     +E  DL  N       + 
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 64  L 64
            
Sbjct: 257 F 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 14  TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFF 73
             +     ++TL+ +NNN+               ++ L++NK+T          + + + 
Sbjct: 93  QELLVGPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 74  DVSHNHLRGAIPQGTQFSTFAN 95
           D+  N +   +      ++   
Sbjct: 150 DLKLNEID-TVNFAELAASSDT 170

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 8e-09
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 4   LDNNFVGEIP-TSIASLKGLQTLNLSNNNLRG-YIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L NN +  +          +Q L+L  N +         ++   +E L+L  N +   + 
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 62  QQLAELTSLAFFDVSHNHLR 81
                   L   D+S N L 
Sbjct: 186 -GQVVFAKLKTLDLSSNKLA 204

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 4   LDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L    +  I   +  SL  L TL L+ N ++       S L+ ++ L      L      
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
            +  L +L   +V+HN ++ +      FS   N
Sbjct: 119 PIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N V  + ++   L+ L+ L+  ++NL+         +L  +  LD+S          
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
               L+SL    ++ N  +       
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 4   LDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  +   S  S   LQ L+LS   ++        +L+ + +L L+ N +      
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
             + L+SL        +L   +    
Sbjct: 95  AFSGLSSLQKLVAVETNLAS-LENFP 119

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT-GQIP 61
           L  N +  +     + L  LQ L     NL       + +L  ++ L+++ N +   ++P
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 62  QQLAELTSLAFFDVSHNHLR 81
           +  + LT+L   D+S N ++
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 8e-11
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLR--GYIPLTLSNLTVIESLDLSSNKLTGQIP 61
             +N  G   + +  L  L+ L+LS N L   G    +    T ++ LDLS N +   + 
Sbjct: 332 FTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGTQFS 91
                L  L   D  H++L+  + + + F 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 19/119 (15%)

Query: 4   LDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
             ++ + ++       SL+ L  L++S+ + R       + L+ +E L ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 62  QQ-LAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
                EL +L F D+S   L   +                   Q  +  +  F     L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 1/95 (1%)

Query: 3   LLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           +  N+F       I   L+ L  L+LS   L    P   ++L+ ++ L+++SN+L     
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAND 96
                LTSL    +  N    + P+    S + N 
Sbjct: 512 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 11  EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
           +IP ++      + L+LS N LR     +  +   ++ LDLS  ++          L+ L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 71  AFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
           +   ++ N +           + A   F+G   L
Sbjct: 79  STLILTGNPI----------QSLALGAFSGLSSL 102

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIP 61
            ++ N        I  LK L+ LN+++N ++   +P   SNLT +E LDLSSNK+     
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 62  QQLAELTSLAFF----DVSHNHLRGAIPQGT 88
             L  L  +       D+S N +   I  G 
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 4   LDNN---FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           L  N   F G    S      L+ L+LS N +   +      L  +E LD   + L  Q+
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QM 411

Query: 61  PQQ--LAELTSLAFFDVSHNHLRGAIPQGT 88
            +      L +L + D+SH H R     G 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTR-VAFNGI 440

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT--GQIP 61
           L N   G+ PT    LK L+ L  ++N        +  +L  +E LDLS N L+  G   
Sbjct: 311 LVNCKFGQFPTL--KLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 62  QQLAELTSLAFFDVSHNHL 80
           Q     TSL + D+S N +
Sbjct: 367 QSDFGTTSLKYLDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 14/101 (13%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +  +  +    +   G Q L L N     +  L L +L     L  +SNK        
Sbjct: 289 LVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLK---RLTFTSNKGGNAFS-- 342

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
             +L SL F D+S N L         F    +    G   L
Sbjct: 343 EVDLPSLEFLDLSRNGL--------SFKGCCSQSDFGTTSL 375

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 11/110 (10%)

Query: 1   IILLDNNFVGEIP-TSIASLKGLQ----TLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK 55
            + L +N +  I  T +  L  +     +L+LS N +    P     +  +  L L +N 
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNF 211

Query: 56  LTGQIPQQ-LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
            +  + +  +  L  L    +     R           F      G   L
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNE----GNLEKFDKSALEGLCNL 257

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +  + + P     L  LQ + +    L   +P T+     +E+L L+ N L   +P  
Sbjct: 88  LRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS 145

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           +A L  L    +        +P
Sbjct: 146 IASLNRLRELSIRACPELTELP 167

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 8e-12
 Identities = 17/78 (21%), Positives = 30/78 (38%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L     +   P        L+ L L + +    +PL +  LT +E LDL       ++P 
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 63  QLAELTSLAFFDVSHNHL 80
            +A+L +     V  +  
Sbjct: 296 LIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 9e-12
 Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQ 62
           + N+ +  +  +I  L  L+ L+L         P        ++ L L   + L   +P 
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPL 271

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
            +  LT L   D+        +P
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVI---------ESLDLSSN 54
           L  N +  +P SIASL  L+ L++        +P  L++             +SL L   
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 55  KLTGQIPQQLAELTSLAFFDVSHNHLR 81
            +   +P  +A L +L    + ++ L 
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS-NKLT----- 57
           +D   + E+P ++    GL+TL L+ N LR  +P ++++L  +  L + +  +LT     
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEP 169

Query: 58  ---GQIPQQLAELTSLAFFDVSHNHLR 81
                   +   L +L    +    +R
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 3   LLDNNFVGEIPTSI--ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
                 +      +  A+  G   L L +  L    P     L+ ++ + + +  L  ++
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 61  PQQLAELTSLAFFDVSHNHLR 81
           P  + +   L    ++ N LR
Sbjct: 120 PDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 10/68 (14%), Positives = 23/68 (33%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L D + +  +P  I  L  L+ L+L        +P  ++ L     + +  +        
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

Query: 63  QLAELTSL 70
           +     + 
Sbjct: 320 RPVARPAE 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 9e-13
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N + +I  ++  L  L+ LN+ +N +     L  +NL+ + SL L++N+L  +  + 
Sbjct: 250 IGTNQISDIN-AVKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEV 306

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           +  LT+L    +S NH+    P
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + +N + +I   + +L  L +L L+NN L       +  LT + +L LS N +T   P  
Sbjct: 272 VGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328

Query: 64  LAELTSLAFFDVSHNHLR 81
           LA L+ +   D ++  ++
Sbjct: 329 LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L  N      + ++++ GL  L ++ + ++   P  ++NLT + SL L+ N++    P  
Sbjct: 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-- 194

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           LA LTSL +F    N +    P
Sbjct: 195 LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N + +I  ++ +L  L+ L L+ +N+    P  L+NLT + SL+L +N         
Sbjct: 95  IGTNKITDIS-ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSP 150

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           L+ +T L +  V+ + ++   P
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L+ N + +I   +ASL  L       N +    P  ++N+T + SL + +NK+T   P  
Sbjct: 184 LNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238

Query: 64  LAELTSLAFFDVSHNHL 80
           LA L+ L + ++  N +
Sbjct: 239 LANLSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 3e-11
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  + V ++   IA+L  L +L+L+ N +    PL  ++LT +       N++T   P  
Sbjct: 162 VTESKVKDVT-PIANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP-- 216

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           +A +T L    + +N +    P
Sbjct: 217 VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +    V  I   I  L  L+ LNL+ N +    P  LSNL  + +L + +NK+T      
Sbjct: 51  VAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISA 105

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           L  LT+L    ++ +++    P
Sbjct: 106 LQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
              N + +I   +A++  L +L + NN +    P  L+NL+ +  L++ +N+++      
Sbjct: 206 AYVNQITDIT-PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INA 260

Query: 64  LAELTSLAFFDVSHNHLRG 82
           + +LT L   +V  N +  
Sbjct: 261 VKDLTKLKMLNVGSNQISD 279

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57
           L +N    E    I  L  L TL LS N++    P  L++L+ ++S D ++  + 
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 4  LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
               + +I    A L       L   ++   +      L  I  L ++  K+     Q 
Sbjct: 7  TLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQG 61

Query: 64 LAELTSLAFFDVSHNHLRGAIP 85
          +  LT+L + +++ N +    P
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP 83

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 21 GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80
          G  TL      +    P   ++L       L    +T  +     EL S+    V+   +
Sbjct: 1  GAATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 5/100 (5%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N + +I       ++ L+ L +SNN L   + L    +  ++ LDLS N L   + +
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNP 102
              +   L    + HN +   +   T   T  N   + N 
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TLKLST-HHTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N + +    + +  GL  ++LS N L   +      +  +E L +S+N+L   +   
Sbjct: 233 LQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGT 88
              + +L   D+SHNHL   + +  
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
             N+ + ++P ++  S + ++ LNL++  +        +    I+ L +  N +    P 
Sbjct: 52  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
               +  L    +  N L  ++P+G          F   P L
Sbjct: 112 VFQNVPLLTVLVLERNDLS-SLPRGI---------FHNTPKL 143

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L+ N +  +P  I  +   L TL++SNNNL      T    T +++L LSSN+LT  +  
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD- 181

Query: 63  QLAELTSLAFFDVSHNHL 80
            L+ + SL   +VS+N L
Sbjct: 182 -LSLIPSLFHANVSYNLL 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           +  N +  +P  +  ++  L  L L  N+L         N   + +L +S+N L      
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159

Query: 63  QLAELTSLAFFDVSHNHLR 81
                TSL    +S N L 
Sbjct: 160 TFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 18  SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
           +L   + +   N+ +R      L +   +E L+L+  ++        A   ++    +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 78  NHLRGAIPQGT 88
           N +R  +P   
Sbjct: 103 NAIR-YLPPHV 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N +  +   ++ +  L   N+S N L      TL+    +E LD S N +       
Sbjct: 172 LSSNRLTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPV 224

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
             ELT L    + HN+L       T  +   N
Sbjct: 225 NVELTIL---KLQHNNL-------TDTAWLLN 246

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 14  TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFF 73
           +++A    ++ L+ S+N++          LT    L L  N LT      L     L   
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLT-DTA-WLLNYPGLVEV 253

Query: 74  DVSHNHLRGAIPQGT 88
           D+S+N L   I    
Sbjct: 254 DLSYNELE-KIMYHP 267

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 5/77 (6%), Positives = 21/77 (27%), Gaps = 1/77 (1%)

Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71
          I +++        +++       Y       L   + +   ++ +       L     + 
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 72 FFDVSHNHLRGAIPQGT 88
            +++   +   I    
Sbjct: 73 LLNLNDLQIE-EIDTYA 88

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT 57
           L +N +  +  +      L+ L L +N++     L LS    +++L LS N   
Sbjct: 302 LSHNHLLHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 4   LDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           LD+N +  I    +     L  L L +N +R     +LS L  +  L L +NKL+ ++P 
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
            L +L  L    +  N++   +    
Sbjct: 259 GLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 4   LDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L NN + E+       L+ L  L L NN +        S L  ++ L +S N L  +IP 
Sbjct: 61  LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP 119

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
            L   +SL    +  N +R  +P+G 
Sbjct: 120 NL--PSSLVELRIHDNRIR-KVPKGV 142

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +    +  IP  +   + L  L+L +N ++      L   + +  L L  N++       
Sbjct: 179 ISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 64  LAELTSLAFFDVSHNHLRGAIPQG 87
           L+ L +L    + +N L   +P G
Sbjct: 237 LSFLPTLRELHLDNNKLS-RVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           ++   +  +  +P  I+       L+L NN++          L  + +L L +NK++   
Sbjct: 37  VVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGT------------QFSTFANDWFAGNPGL 104
            +  + L  L    +S NHL   IP               +        F+G   +
Sbjct: 95  EKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT-GQIPQ 62
           +  N + EIP ++     L  L + +N +R       S L  +  +++  N L       
Sbjct: 109 ISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
              +   L +  +S   L   IP+  
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPKDL 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 4   LDNNFVGEIPTSIASLKG--LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           +  N +        +  G  L  L +S   L G        L     L L  NK+   I 
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL---NELHLDHNKIQ-AIE 209

Query: 62  QQ-LAELTSLAFFDVSHNHLRGAIPQGT 88
            + L   + L    + HN +R  I  G+
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIR-MIENGS 236

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-------LTLSNLTVIESLDLSSNKL 56
           LDNN +  +P  +  LK LQ + L  NN+   +                   + L +N +
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

Query: 57  T-GQIPQQL-AELTSLAFFDVSHN 78
              ++       +T        + 
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 5e-12
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N + +I       ++ L+ L +SNN L   + L    +  ++ LDLS N L   + +
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 318

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLC 105
              +   L    + HN +   +   T   T  N   + N   C
Sbjct: 319 NQPQFDRLENLYLDHNSIV-TLKLST-HHTLKNLTLSHNDWDC 359

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 9e-11
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N + +    + +  GL  ++LS N L   +      +  +E L +S+N+L   +   
Sbjct: 239 LQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 296

Query: 64  LAELTSLAFFDVSHNHLR 81
              + +L   D+SHNHL 
Sbjct: 297 GQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L++  + EI T   A    +Q L +  N +R   P    N+ ++  L L  N L+  +P+
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140

Query: 63  QL-AELTSLAFFDVSHNHLRGAIPQGT 88
            +      L    +S+N+L   I   T
Sbjct: 141 GIFHNTPKLTTLSMSNNNLE-RIEDDT 166

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L+ N +  +P  I  +   L TL++SNNNL      T    T +++L LSSN+LT  +  
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL 188

Query: 63  QLAELTSLAFFDVSHNHL 80
            L  + SL   +VS+N L
Sbjct: 189 SL--IPSLFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
             N+ + ++P ++  S + ++ LNL++  +        +    I+ L +  N +    P 
Sbjct: 58  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
               +  L    +  N L  ++P+G          F   P L
Sbjct: 118 VFQNVPLLTVLVLERNDLS-SLPRGI---------FHNTPKL 149

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 18  SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
           +L   + +   N+ +R      L +   +E L+L+  ++        A   ++    +  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 78  NHLRGAIPQGT 88
           N +R  +P   
Sbjct: 109 NAIR-YLPPHV 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           + NN +  I      +   LQ L LS+N L     + LS +  +   ++S N L+     
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS----- 205

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
            LA   ++   D SHN +   +    
Sbjct: 206 TLAIPIAVEELDASHNSIN-VVRGPV 230

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 14  TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFF 73
           +++A    ++ L+ S+N++          LT    L L  N LT      L     L   
Sbjct: 205 STLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLT-DTA-WLLNYPGLVEV 259

Query: 74  DVSHNHLRGAIPQGT 88
           D+S+N L   I    
Sbjct: 260 DLSYNELE-KIMYHP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 5/78 (6%), Positives = 21/78 (26%), Gaps = 1/78 (1%)

Query: 11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
           I +++        +++       Y       L   + +   ++ +       L     +
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 71 AFFDVSHNHLRGAIPQGT 88
             +++   +   I    
Sbjct: 78 ELLNLNDLQIE-EIDTYA 94

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           ++N         I+ L  L+ L +   ++       LS LT +  LD+S +     I  +
Sbjct: 73  INNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 64  LAELTSLAFFDVSHNHL 80
           +  L  +   D+S+N  
Sbjct: 132 INTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           ++  +   +   +++ L  L  L++S++     I   ++ L  + S+DLS N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 63  QLAELTSLAFFDVSHNHL 80
            L  L  L   ++  + +
Sbjct: 154 PLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L N  V ++ T I     ++ L ++N +   Y P+  S L+ +E L +    +T      
Sbjct: 51  LANINVTDL-TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGKDVTSDKIPN 107

Query: 64  LAELTSLAFFDVSHNHLRGAIPQG 87
           L+ LTSL   D+SH+    +I   
Sbjct: 108 LSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG 58
           L  N  + +I   + +L  L++LN+  + +  Y    + +   +  L   S  + G
Sbjct: 143 LSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L+ N + +I   I++LK L  L L  NN+    P  +S+LT ++ L   +NK++      
Sbjct: 294 LNENQLEDIS-PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSS 348

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           LA LT++ +    HN +    P
Sbjct: 349 LANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L+ N + +I  ++ASL  L  L+L+NN +    P  LS LT +  L L +N+++   P  
Sbjct: 228 LNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           LA LT+L   +++ N L    P
Sbjct: 283 LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            D   +  I   +  L  L  +N SNN L    P  L NLT +  + +++N++    P  
Sbjct: 53  ADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-- 107

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           LA LT+L    + +N +    P
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L  N +  I   +A L  L  L L+ N L    P  +SNL  +  L L  N ++   P  
Sbjct: 272 LGANQISNIS-PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 64  LAELTSLAFFDVSHNHLRG 82
           ++ LT L      +N +  
Sbjct: 327 VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 5/82 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + +N V +I   +A L  L++L  +NN +    P  L  LT ++ L L+ N+L       
Sbjct: 184 ISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGT 238

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           LA LT+L   D+++N +    P
Sbjct: 239 LASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             N      P  +A+L  L+ L++S+N +       L+ LT +ESL  ++N+++   P  
Sbjct: 163 FGNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP-- 216

Query: 64  LAELTSLAFFDVSHNHLRG 82
           L  LT+L    ++ N L+ 
Sbjct: 217 LGILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L  N + +I   ++SL  LQ L   NN +     L  +NLT I  L    N+++   P  
Sbjct: 316 LYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSAGHNQISDLTP-- 370

Query: 64  LAELTSLAFFDVSHNHLRGAIP 85
           LA LT +    ++      A  
Sbjct: 371 LANLTRITQLGLNDQAWTNAPV 392

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 2  ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           +  +  + +I  +  +L       L   N+   +    ++L  + +L      +     
Sbjct: 7  TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SI 61

Query: 62 QQLAELTSLAFFDVSHNHLRGAIP 85
            +  L +L   + S+N L    P
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP 85

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 9e-09
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             NN V ++  S+A+L  +  L+  +N +    P  L+NLT I  L L+    T      
Sbjct: 338 FYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394

Query: 64  LAELTSL 70
            A ++  
Sbjct: 395 KANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           ++NN + +I   +A+L  L  L L NN +    P  L NLT +  L+LSSN ++      
Sbjct: 97  MNNNQIADIT-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISA 151

Query: 64  LAELTSLAFFDVSHN 78
           L+ LTSL      + 
Sbjct: 152 LSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L NN + +I   + +L  L  L LS+N +     L  S LT ++ L    N++T   P  
Sbjct: 119 LFNNQITDIDP-LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSF-GNQVTDLKP-- 172

Query: 64  LAELTSLAFFDVSHNHLRG 82
           LA LT+L   D+S N +  
Sbjct: 173 LANLTTLERLDISSNKVSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 11/77 (14%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             +N + ++   +A+L  +  L L++           +N+++  ++   +  L    P  
Sbjct: 360 AGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APAT 416

Query: 64  LAELTSLAFFDVSHNHL 80
           +++  S    D++ N  
Sbjct: 417 ISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 3/59 (5%)

Query: 22 LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80
          L +  ++ +     I  T + L       L    +T  +     +L  +         +
Sbjct: 3  LGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 1e-11
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +  +  +   +  L  +  L+LS+N LR  +P  L+ L  +E L  S N L   +   
Sbjct: 448 LAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-G 503

Query: 64  LAELTSLAFFDVSHNHL 80
           +A L  L    + +N L
Sbjct: 504 VANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.3 bits (135), Expect = 7e-10
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQ 62
           L +N +  +P ++A+L+ L+ L  S+N L   +   ++NL  ++ L L +N+L      Q
Sbjct: 470 LSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 63  QLAELTSLAFFDVSHNHL 80
            L     L   ++  N L
Sbjct: 528 PLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
           + F+ E          ++ L+L++ +L   +   L  L ++  LDLS N+L   +P  LA
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALA 483

Query: 66  ELTSLAFFDVSHNHLR 81
            L  L     S N L 
Sbjct: 484 ALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLT----- 57
             +N +  +   +A+L  LQ L L NN L+       L +   +  L+L  N L      
Sbjct: 493 ASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

Query: 58  -GQIPQQLAELTSL 70
             ++ + L  ++S+
Sbjct: 552 QERLAEMLPSVSSI 565

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N + +I       L  LQ LNLS N L          L  +  +DL  N +     Q
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 63  QLAELTSLAFFDVSHNHL 80
               L  L   D+  N L
Sbjct: 357 TFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 3   LLDNNFVGEI-PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI- 60
           L        I   +  +L  L+ L+L ++ +    P     L  +  L L    L+  + 
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 61  -PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
                  L +L   D+S N +R ++     F    +
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIR-SLYLHPSFGKLNS 149

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L + FV  + + +  +LK L+ LNL+ N +          L  ++ L+LS N L      
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
               L  +A+ D+  NH+   I   T F     
Sbjct: 333 NFYGLPKVAYIDLQKNHIA-IIQDQT-FKFLEK 363

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 19  LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI-PQQLAELTSLAFFDVSH 77
           L   + L LS N +R     +   L  ++ L+L S      I  +    L +L   D+  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 78  NHLRGAIPQGTQFSTFANDWFAGNPGL 104
           + +               D F G   L
Sbjct: 83  SKIY----------FLHPDAFQGLFHL 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 1   IILLDNNFVGEIP--TSIASLKGLQTLNLSNNNLRGYI-----PLTLSNLTVIESLDLSS 53
           I++L+ N         + +    L+ L L  N L+              L+ ++ L L+ 
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 54  NKLTGQIPQQLAELTSLAFFDVSHNHLR 81
           N L    P   + LT+L    ++ N L 
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +GE+ +S    L  +  ++L  N++      T   L  +++LDL  N LT     
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----- 375

Query: 63  QLAELTSLAFFDVSHNHLR 81
            +  + S+    +S N L 
Sbjct: 376 TIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 9/106 (8%)

Query: 5   DNNFVGEIPTSI-----ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           +N       T +       L  LQ L L++N L    P   S+LT +  L L+SN+LT  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLC 105
               L    +L   D+S N L    P    F + +      N  +C
Sbjct: 520 SHNDL--PANLEILDISRNQLL--APNPDVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 4   LDNNFVGEIPTSIAS---LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
              + + +   +  +      ++ L+LS+  +          L  ++ L+L+ NK+    
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
            +    L +L   ++S+N L              +  F G P +
Sbjct: 307 DEAFYGLDNLQVLNLSYNLL----------GELYSSNFYGLPKV 340

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 4   LDNNFVGEIP--TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTV--IESLDLSSNKLTGQ 59
           L  N +  +    S   L  L++++ S+N +       L  L    +    L++N L  +
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 60  IPQQLAEL------TSLAFFDVSHNHLRGAIP 85
           +     +         L   DVS N     I 
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 27/115 (23%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLS--------------------- 41
           L DN       T+I  +  +  + LS N L     + L+                     
Sbjct: 369 LRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 42  NLTVIESLDLSSNKLTGQIPQQL-AELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
            +  ++ L L+ N+ +     Q  +E  SL    +  N L+ A      +  F  
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 4   LDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  I   +   L+ LQTL+L +N L      T+  +  I  + LS NKL   +P+
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPK 398

Query: 63  QLAELTSLAFFDVSHNHLRG 82
                  +    +S N L  
Sbjct: 399 INLTANLI---HLSENRLEN 415

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 4   LDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           LD N + ++   S+  L  L  L LS N++      +L+N   +  L L++NKL  ++P 
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
            LA+   +    + +N++  AI    
Sbjct: 258 GLADHKYIQVVYLHNNNIS-AIGSND 282

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + +  +  IP  +     L  L+L  N +      +L  L  +  L LS N ++      
Sbjct: 178 IADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 64  LAELTSLAFFDVSHNHLRGAIPQG 87
           LA    L    +++N L   +P G
Sbjct: 236 LANTPHLRELHLNNNKLV-KVPGG 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT-GQIPQ 62
           L  N + E+P  +   K LQ L +  N +        + L  +  ++L +N L    I  
Sbjct: 107 LSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 63  Q-LAELTSLAFFDVSHNHLRGAIPQGT 88
                +  L++  ++  ++   IPQG 
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           ++   +  + ++P  +        L+L NN +         NL  + +L L +NK++   
Sbjct: 35  VVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGT 88
           P   A L  L    +S N L+  +P+  
Sbjct: 93  PGAFAPLVKLERLYLSKNQLK-ELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRG------YIPLTLSNLTVIESLDLSSNKLT 57
           L+NN + ++P  +A  K +Q + L NNN+          P   +       + L SN + 
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 58  -GQIPQQL-AELTSLAFFDVSHN 78
             +I       +   A   + + 
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNY 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 9e-11
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 4   LDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L+   +  IPT +++ L GL  L L + N+      +   L  ++ L++S       +  
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
                 +L    ++H +L  A+P                    ST           L
Sbjct: 219 NCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 3e-10
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           +    ++  +  +      L +L++++ NL     L + +L  +  L+LS N ++     
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
            L EL  L    +    L   +             F G   L
Sbjct: 267 MLHELLRLQEIQLVGGQLA-VVEPYA---------FRGLNYL 298

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 17/117 (14%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L+ N V  +      +L  L+TL L +N L+       + L+ +  LD+S NK+   +  
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
              +L +L   +V  N L   I                     ++   +  +   GL
Sbjct: 123 MFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 19/121 (15%)

Query: 1   IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           ++ L  N +  +     AS   L+ L L+ N +    P   +NL  + +L L SN+L   
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-L 94

Query: 60  IPQQ-LAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPG 103
           IP      L++L   D+S N +   +                        ++  F+G   
Sbjct: 95  IPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153

Query: 104 L 104
           L
Sbjct: 154 L 154

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 1/83 (1%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           + +N +  I     + L  L+ L L   NL       LS+L  +  L L    +      
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 63  QLAELTSLAFFDVSHNHLRGAIP 85
               L  L   ++SH      + 
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
            +L        +P  I      + L+L  N ++       ++   +E L+L+ N ++   
Sbjct: 15  AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
           P     L +L    +  N L+  IP G                +     +  F     L
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 4   LDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           + +  +  +P  ++  L  L+ LNLS N +       L  L  ++ + L   +L    P 
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
               L  L   +VS N L   + +  
Sbjct: 291 AFRGLNYLRVLNVSGNQLT-TLEESV 315

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 4   LDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  I    + +   LQ L L ++ +         +L  +E LDLS N L+     
Sbjct: 33  LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFS 91
               L+SL + ++  N  +  +   + F 
Sbjct: 93  WFGPLSSLKYLNLMGNPYQ-TLGVTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N    +P S    + ++ LNLS+  +R         L V   LD+S+N L       
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV---LDVSNNNLD-SFSLF 449

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFS 91
           L  L  L    +S N L+  +P  + F 
Sbjct: 450 LPRLQEL---YISRNKLK-TLPDASLFP 473

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 3   LLDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           + +     EI     A L  L  L +   +LR Y   +L ++  I  L L  ++    + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 62  QQLAELTSLAFFDVSHNHLRG 82
                L+S+ + ++   +L  
Sbjct: 190 IFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           +       ++ T  + L+ ++ + + N+ +         +L  +E LDLS N +  +  +
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 63  Q---LAELTSLAFFDVSHNHLR 81
                    SL    +S NHLR
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 9e-09
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             +     IP+ +     +++L+LS N +       L     ++ L L S+++       
Sbjct: 12  GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
              L SL   D+S NHL          S+ ++ WF     L
Sbjct: 70  FYSLGSLEHLDLSDNHL----------SSLSSSWFGPLSSL 100

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 4   LDNNFVGEIPT---SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           L  N +  +      + +LK L +L++S N     +P +      +  L+LSS  +   +
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VV 425

Query: 61  PQQLAELTSLAFFDVSHNHLR 81
              +    +L   DVS+N+L 
Sbjct: 426 KTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + NN +         L  LQ L +S N L+  +P   S   V+  + +S N+L       
Sbjct: 438 VSNNNLDSFS---LFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGI 492

Query: 64  LAELTSLAFFDVSHNHL 80
              LTSL    +  N  
Sbjct: 493 FDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 4   LDNNFVGEIPTS-IASLKGLQTLNLSNNNLRG-YIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L +N +  + +S    L  L+ LNL  N  +   +     NLT +++L + + +   +I 
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 62  QQ-LAELTSLAFFDVSHNHLR 81
           +   A LTSL   ++    LR
Sbjct: 141 RIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 4   LDNNFVGEI-PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           +    +      S+ S++ +  L L  +     + +    L+ +  L+L    L      
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 63  QLAELTSLAFFDVSHNHL 80
            L      +         
Sbjct: 215 PLPVDEVSSPMKKLAFRG 232

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 6   NNFVGEIPTSIASLKGLQTLNL-----SNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
            +F       ++ L  ++T+ +         L   +    S L  ++ + + ++K+   +
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325

Query: 61  PQQ-LAELTSLAFFDVSHNHL 80
           P      L SL F D+S N +
Sbjct: 326 PCSFSQHLKSLEFLDLSENLM 346

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 7/74 (9%), Positives = 18/74 (24%), Gaps = 1/74 (1%)

Query: 15  SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
                      + + +       L       I  L +    L   +    + L  +    
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 75  VSHNHLRGAIPQGT 88
           V ++ +   +P   
Sbjct: 317 VENSKVF-LVPCSF 329

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 4   LDNNFVGEIPTS-IASLKGLQTLNLSNNNLRGYIPLTLS----NLTVIESLDLSSNKLT- 57
           +            +     L TL+LS+N   G   L  +        ++ L L +  +  
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 58  --GQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQ 89
             G      A    L   D+SHN LR A    + 
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 7e-09
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 5   DNNFVGEIPTSIA----SLKGLQTLNLSNNNLR---GYIPLTLSNLTVIESLDLSSNKLT 57
           DN  +GE     A        LQ L L N  +    G      +    ++ LDLS N L 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 58  GQIPQQL-AELTSLAFFDVSHNHLR 81
                      + L   ++S   L+
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 6   NNFVGEIPTSIAS-LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
           N+               L +LNLS   L+       + L     LDLS N+L    P   
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR-NP-SP 292

Query: 65  AELTSLAFFDVSHNHLRGA 83
            EL  +    +  N    +
Sbjct: 293 DELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 4   LDNNFVGEIPTSIASL-----KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG 58
           L N         +A L      GL+ L+++  +   +    +     + +LDLS N   G
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 59  QIP----QQLAELTSLAFFDVSHNHLR 81
           +          +  +L    + +  + 
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGME 214

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  I  +    L+ L+ L LS N++R       + L  + +L+L  N+LT     
Sbjct: 71  LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
               L+ L    + +N +  +IP   
Sbjct: 131 AFVYLSKLKELWLRNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIP 61
           L NN +  IP+     +  L+ L+L       YI       L+ +  L+L+   L  +IP
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGT 88
             L  L  L   D+S NHL  AI  G+
Sbjct: 202 -NLTPLIKLDELDLSGNHLS-AIRPGS 226

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L    + EIP  +  L  L  L+LS N+L    P +   L  ++ L +  +++       
Sbjct: 192 LAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFAND---WFAGNPGLC 105
              L SL   +++HN+L   +P    F+   +        NP  C
Sbjct: 251 FDNLQSLVEINLAHNNLT-LLPHDL-FTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 11  EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
           E+P  I++    + LNL  N ++     +  +L  +E L LS N +          L +L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 71  AFFDVSHNHLRGAIPQGT 88
              ++  N L   IP G 
Sbjct: 115 NTLELFDNRLT-TIPNGA 131

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  I       L  L TL L +N L          L+ ++ L L +N +      
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 63  QLAELTSLAFFDVSH-NHLRGAIPQGT 88
               + SL   D+     L   I +G 
Sbjct: 155 AFNRIPSLRRLDLGELKRLS-YISEGA 180

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             NN + E+P  + +L  L  +   NN+L+  +P    +L   ES+   +N L  ++P +
Sbjct: 180 AGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---ESIVAGNNILE-ELP-E 232

Query: 64  LAELTSLAFFDVSHNHLR 81
           L  L  L      +N L+
Sbjct: 233 LQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 17/92 (18%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTV-------------IESL 49
           L  ++ + E+P    ++K       + +      P                        L
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 50  DLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81
           +L++  L+  +P+    L SL     S N L 
Sbjct: 77  ELNNLGLS-SLPELPPHLESL---VASCNSLT 104

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 18/97 (18%)

Query: 3   LLDNNFVGEIPTSIASL-------------KGLQTLNLSNNNLRGYIPLTLSNLTVIESL 49
              + +    P                   +    L L+N  L   +P    +L   ESL
Sbjct: 41  NAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---ESL 96

Query: 50  DLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQ 86
             S N LT ++P+    L SL   + +   L    P 
Sbjct: 97  VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP----LTLS-----------NLTVIES 48
              N + E+P    SLK L   N +   L    P    L +S           N + ++ 
Sbjct: 98  ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI 157

Query: 49  LDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80
           +D+ +N L  ++P     L  +      +N L
Sbjct: 158 IDVDNNSLK-KLPDLPPSLEFI---AAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +DNN + ++P    SL   + +   NN L   +P  L NL  + ++   +N L  ++P  
Sbjct: 160 VDNNSLKKLPDLPPSL---EFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDL 213

Query: 64  LAELTSLAFFDVSHNHLR 81
              L S+      +N L 
Sbjct: 214 PLSLESI---VAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             NN + E+P  + +L  L T+   NN L+  +P    +L   E+L++  N LT  +P+ 
Sbjct: 222 AGNNILEELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPEL 275

Query: 64  LAELTSLAFFDVSHNHL 80
              LT L   DVS N  
Sbjct: 276 PQSLTFL---DVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 8e-08
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N    +     +L     LN S+N +R  +     +L   E L++S+NKL  ++P  
Sbjct: 284 VSENIFSGLSELPPNLY---YLNASSNEIRS-LCDLPPSL---EELNVSNNKLI-ELPAL 335

Query: 64  LAELTSLAFFDVSHNHLR 81
              L  L     S NHL 
Sbjct: 336 PPRLERL---IASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71
          I     S   LQ     ++NL   +P+   N+        + ++     P    E   +A
Sbjct: 3  INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 72 FFDVSHNHLRG 82
             +     R 
Sbjct: 62 VSRLRDCLDRQ 72

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + NN + E+P     L   + L  S N+L   +P    NL     L +  N L  + P  
Sbjct: 324 VSNNKLIELPALPPRL---ERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDI 375

Query: 64  LAELTSL 70
              +  L
Sbjct: 376 PESVEDL 382

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N+ + E+P    +LK    L++  N LR   P    ++   E L ++S ++      
Sbjct: 382 LRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEF 434

Query: 63  QLAELTSLAFFDVSHNHL 80
                  L      H+H 
Sbjct: 435 AHETTDKLEDDVFEHHHH 452

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 5e-10
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N +  +P   AS   L+ L+  +N L   +P   ++L     LD+ +N+LT  +P+ 
Sbjct: 87  ITQNALISLPELPAS---LEYLDACDNRLS-TLPELPASLK---HLDVDNNQLT-MLPEL 138

Query: 64  LAELTSLAFFDVSHNHLR 81
            A L  +   +  +N L 
Sbjct: 139 PALLEYI---NADNNQLT 153

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 7e-10
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             +N +  +P   ASL   + L++ NN L   +P   + L   E ++  +N+LT  +P+ 
Sbjct: 107 ACDNRLSTLPELPASL---KHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPEL 158

Query: 64  LAELTSLAFFDVSHNHLR 81
              L  L    V +N L 
Sbjct: 159 PTSLEVL---SVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 8e-10
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            DNN +  +P    SL   + L++ NN L  ++P    +L     LD+S+N L   +P  
Sbjct: 147 ADNNQLTMLPELPTSL---EVLSVRNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAV 198

Query: 64  LAELTSL----AFFDVSHNHLR 81
                       FF    N + 
Sbjct: 199 PVRNHHSEETEIFFRCRENRIT 220

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQT----LNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           +  N +  +P         +          N +  +IP  + +L    ++ L  N L+ +
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFA 99
           I + L++ T+   +     +   +  Q         D   
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQIP 61
              N  V  +      +     L L+  NL   +P  L   +TV   L+++ N L   +P
Sbjct: 44  ENRNEAVSLLK--ECLINQFSELQLNRLNLSS-LPDNLPPQITV---LEITQNALI-SLP 96

Query: 62  QQLAELTSLAFFDVSHNHLR 81
           +  A L  L   D   N L 
Sbjct: 97  ELPASLEYL---DACDNRLS 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
          +  ++    +       + N     +   L  +     L L+   L+  +P  L     +
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQI 82

Query: 71 AFFDVSHNHLR 81
             +++ N L 
Sbjct: 83 TVLEITQNALI 93

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 2/86 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
              N +  IP +I SL    T+ L +N L   I  +LS  T            +    QQ
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQ 89
                     D               
Sbjct: 274 --NTLHRPLADAVTAWFPENKQSDVS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 7e-10
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 11/78 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + +N +  +P   +    L  L   NN L   +P+  S L     L +S N+L   +P  
Sbjct: 148 VSDNQLASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTL 199

Query: 64  LAELTSLAFFDVSHNHLR 81
            +EL  L      +N L 
Sbjct: 200 PSELYKL---WAYNNRLT 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N +  +P     L  L   +    +L    P   S L     L +  N+LT  +P  
Sbjct: 88  VSGNQLTSLPVLPPGLLELSIFSNPLTHL----PALPSGLC---KLWIFGNQLT-SLPVL 139

Query: 64  LAELTSLAFFDVSHNHL 80
              L  L    VS N L
Sbjct: 140 PPGLQEL---SVSDNQL 153

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N +  +P   + L    +L++  N L   +P +L +L+   +++L  N L+ +  Q 
Sbjct: 248 VSGNRLTSLPMLPSGL---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303

Query: 64  LAELTSLAFFD---VSHNHLRGAIPQGTQFSTFAN-DWFAGNP 102
           L E+TS   +    +  +    + P+ T+    A  DW     
Sbjct: 304 LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 25/95 (26%)

Query: 4   LDNNFVGEIPTSIASLK-----------------GLQTLNLSNNNLRGYIPLTLSNLTVI 46
           + +N +  +PT  + L                  GL+ L +S N L   +P+  S L   
Sbjct: 188 VSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPSELK-- 244

Query: 47  ESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81
             L +S N+LT  +P   + L SL    V  N L 
Sbjct: 245 -ELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           +  N +  +P        LQ L++S+N L   +P   S L     L   +N+LT  +P  
Sbjct: 128 IFGNQLTSLPVLPPG---LQELSVSDNQLAS-LPALPSELC---KLWAYNNQLT-SLPML 179

Query: 64  LAELTSLAFFDVSHNHLR 81
            + L  L    VS N L 
Sbjct: 180 PSGLQEL---SVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 24/85 (28%)

Query: 16  IASLKGLQTLNLSNNNLR--------------------GYIPLTLSNLTVIESLDLSSNK 55
                G   LN+  + L                       +P     L    +L++S N+
Sbjct: 36  ACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELR---TLEVSGNQ 92

Query: 56  LTGQIPQQLAELTSLAFFDVSHNHL 80
           LT  +P     L  L+ F     HL
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHL 116

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 1   IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           + + + +   +I     A L  L+ L +  ++L+ Y P +L ++  +  L L   +    
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-L 212

Query: 60  IPQQL-AELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
           + +      +S+   ++    L       ++ ST   +        
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDT--FHFSELSTGETNSLIKKFTF 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L NN +  I  S       LQ L L++N +      + S+L  +E LDLS N L+  +  
Sbjct: 59  LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSS 117

Query: 63  QL-AELTSLAFFDVSHNHLRGAIPQGTQFS 91
                L+SL F ++  N  +  + + + FS
Sbjct: 118 SWFKPLSSLTFLNLLGNPYK-TLGETSLFS 146

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +N +  I     +SL  L+ L+LS N L          L+ +  L+L  N     + +
Sbjct: 83  LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141

Query: 63  Q--LAELTSLAFFDVSHNHLRGAIPQGT 88
               + LT L    V +      I +  
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKD 169

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 12  IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71
           IP+ +     +++L+LSNN +       L     +++L L+SN +        + L SL 
Sbjct: 46  IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103

Query: 72  FFDVSHNHLRGAIPQGT 88
             D+S+N+L   +    
Sbjct: 104 HLDLSYNYLS-NLSSSW 119

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 4   LDNNFVGEIPT----SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           LD     E+ T    S+      + + +++ +L   +   L+ ++ +  L+ S N+L   
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS- 291

Query: 60  IPQQ-LAELTSLAFFDVSHNHLR 81
           +P      LTSL    +  N   
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGY--------IPLTLSNLTVIESLDLSSN 54
           L       +          ++ L L + +L  +           +L       ++ ++  
Sbjct: 205 LHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 55  KLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT 88
            L  Q+ + L +++ L   + S N L+  +P G 
Sbjct: 265 SLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 3   LLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           +  N+F       I   L+ L  L+LS   L    P   ++L+ ++ L++S N       
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGT 88
                L SL   D S NH+     +  
Sbjct: 217 FPYKCLNSLQVLDYSLNHIM-TSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 4   LDNN---FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           L +N   F G    S      L+ L+LS N +   +      L  +E LD   + L  Q+
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QM 116

Query: 61  PQQ--LAELTSLAFFDVSHNHLRGAIPQGT 88
            +      L +L + D+SH H R     G 
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 4   LDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
             ++ + ++       SL+ L  L++S+ + R       + L+ +E L ++ N       
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 62  QQ-LAELTSLAFFDVSHNHLRGAIPQGT 88
                EL +L F D+S   L   +    
Sbjct: 168 PDIFTELRNLTFLDLSQCQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N V  + ++   L+ L+ L+  ++NL+         +L  +  LD+S          
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 63  Q-LAELTSLAFFDVSHNHLRGAIPQGT 88
                L+SL    ++ N  +       
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ--IPQQLAELT 68
           +PT I        L L +N L+         LT +  L LSSN L+ +    Q     T
Sbjct: 21 SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 69 SLAFFDVSHNHLR 81
          SL + D+S N + 
Sbjct: 79 SLKYLDLSFNGVI 91

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 23 QTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRG 82
            +  ++  L   +P  + +      L+L SNKL         +LT L    +S N L  
Sbjct: 10 TEIRCNSKGLT-SVPTGIPSSA--TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 83 AIPQGTQFSTFAN 95
                      +
Sbjct: 67 KGCCSQSDFGTTS 79

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 4   LDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L +N +  +        L  L +L LS+N+L          +  +  LDLSSN L   + 
Sbjct: 46  LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLD 104

Query: 62  QQ-LAELTSLAFFDVSHNHLRGAIPQGT 88
           +   ++L +L    + +NH+   + +  
Sbjct: 105 EFLFSDLQALEVLLLYNNHIV-VVDRNA 131

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +N +  I +     +  L+ L+LS+N+L        S+L  +E L L +N +      
Sbjct: 71  LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
              ++  L    +S N +    P   
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVEL 155

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIP----LTLSNLTVIESLDLSSNKLTG 58
           L NN +  +  +    +  LQ L LS N +    P       + L  +  LDLSSNKL  
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 59  QIPQQLAELTSLAFFDVS 76
                L +L +     + 
Sbjct: 178 LPLTDLQKLPAWVKNGLY 195

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L    + ++P  +  L GL+ L +S N+     P +   L+ ++ L + +++++      
Sbjct: 203 LGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFAND---WFAGNPGLC 105
              L SL   +++HN+L  ++P    F+            NP  C
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDL-FTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           ++     + E+P  I      + LNL  NN++     T  +L  +E L L  N +  QI 
Sbjct: 59  VVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE 115

Query: 62  QQ-LAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
                 L SL   ++  N L   IP G                   +  +  F   P L
Sbjct: 116 VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS-NKLTGQIP 61
           L +N++  IP+     L  L+ L L NN +        + +  +  LDL    KL     
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 62  QQLAELTSLAFFDVSHNHLR 81
                L +L + ++   +++
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK 209

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           LD N +  I   +A L  LQ L++ N  +    P  L+NL+ + +L    NK++   P  
Sbjct: 136 LDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-- 190

Query: 64  LAELTSLAFFDVSHNHL 80
           LA L +L    + +N +
Sbjct: 191 LASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L  N +  +  +IA L+ ++TL+L++  +    P  L+ L+ ++ L L  N++T   P  
Sbjct: 92  LSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-- 146

Query: 64  LAELTSLAFFDVSHNHL 80
           LA LT+L +  + +  +
Sbjct: 147 LAGLTNLQYLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + N  V ++   +A+L  L TL   +N +    PL  ++L  +  + L +N+++   P  
Sbjct: 158 IGNAQVSDLT-PLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP-- 212

Query: 64  LAELTSLAFFDVSHNHL 80
           LA  ++L    +++  +
Sbjct: 213 LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N + ++   + +L  +  L LS N L+      ++ L  I++LDL+S ++T   P  
Sbjct: 70  LKDNQITDLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP-- 124

Query: 64  LAELTSLAFFDVSHNHLR 81
           LA L++L    +  N + 
Sbjct: 125 LAGLSNLQVLYLDLNQIT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
                V  I   +  L  L  L L +N +    P  L NLT I  L+LS N L       
Sbjct: 48  AFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK--NVSA 102

Query: 64  LAELTSLAFFDVSHNHLR 81
           +A L S+   D++   + 
Sbjct: 103 IAGLQSIKTLDLTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            D+N + +I   +ASL  L  ++L NN +    P  L+N + +  + L++  +T Q    
Sbjct: 180 ADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 64  LAELTSL 70
              L   
Sbjct: 237 NNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 16 IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDV 75
            +L     +    +N+   +    ++L  I +L      +T  I   +  L +L   ++
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLEL 70

Query: 76 SHNHLR 81
            N + 
Sbjct: 71 KDNQIT 76

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 5e-09
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 1   IILLDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           + + +   +  +    +  L  L+ L +  + LR   P        +  L+LS N L   
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94

Query: 60  IPQQLAELTSLAFFDVSHNHLR 81
           +  +  +  SL    +S N L 
Sbjct: 95  LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 9e-09
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 11  EIPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIPQQLAELTS 69
           +    +   + L  L + N     ++ L  L  L  + +L +  + L    P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 70  LAFFDVSHNHLRGAIPQGTQFSTFAND-WFAGNPGLC 105
           L+  ++S N L  ++   T       +   +GNP  C
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +N +  +P      L  L  L L  N +          L  ++ L L  N++    P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAND---WFAGNPGLC 105
              +L  L    +  N+L  A+P     +            NP +C
Sbjct: 196 AFRDLGRLMTLYLFANNLS-ALPTEA-LAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 18/118 (15%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  +P +   + + L  L L +N L        + L ++E LDLS N     +  
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 63  Q-LAELTSLAFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
                L  L    +    L+  +  G                      +D F     L
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 19/109 (17%), Positives = 27/109 (24%), Gaps = 17/109 (15%)

Query: 11  EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
            +P  I      Q + L  N +      +      +  L L SN L          L  L
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 71  AFFDVSHNHLRGAIPQGT---------------QFSTFANDWFAGNPGL 104
              D+S N    ++   T                        F G   L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             N+ + ++   I  L GL  L  ++NN+     L LS  T +  L   SNKLT  +   
Sbjct: 49  CHNSSITDMT-GIEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLD-- 101

Query: 64  LAELTSLAFFDVSHNHL 80
           +  LT L + +   N L
Sbjct: 102 VTPLTKLTYLNCDTNKL 118

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 1  IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           +            S   L  L +L+  N+++       +  LT +  L  +SN +T  +
Sbjct: 23 EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT-TL 79

Query: 61 PQQLAELTSLAFFDVSHNHL 80
             L++ T+L +     N L
Sbjct: 80 D--LSQNTNLTYLACDSNKL 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            D N + ++   +     L  L+ S+N L     + ++ LT +   D S N LT      
Sbjct: 198 CDTNNITKLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVST 252

Query: 64  LAELTSLAFFDVSHNHL 80
           L++LT+L         L
Sbjct: 253 LSKLTTL---HCIQTDL 266

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             +N +  +   ++    L  L   +N L     L ++ LT +  L+  +NKLT     Q
Sbjct: 71  CTSNNITTLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDVSQ 125

Query: 64  LAELTSLAFFDVSHNHL 80
              LT L   + + N L
Sbjct: 126 NPLLTYL---NCARNTL 139

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
              N  + ++   +     L TL+ S N +     L +S   ++  L+  +N +T ++  
Sbjct: 155 CHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD- 207

Query: 63  QLAELTSLAFFDVSHNHL 80
            L +   L F D S N L
Sbjct: 208 -LNQNIQLTFLDCSSNKL 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
                 + E+   +     L  L+     +     L LS    +  L L++ +LT ++  
Sbjct: 282 AEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD- 334

Query: 63  QLAELTSLAFFDVSHNHL 80
            ++  T L      + H+
Sbjct: 335 -VSHNTKLKSLSCVNAHI 351

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            D+N +  +   +  L  L  LN   N L     L +S   ++  L+ + N LT +I   
Sbjct: 92  CDSNKLTNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID-- 143

Query: 64  LAELTSLAFFDVSHNHL 80
           ++  T L   D   N  
Sbjct: 144 VSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
                + E+   ++    L  L L+N  L     L +S+ T ++SL   +  +       
Sbjct: 304 CQAAGITELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQ-DFS-S 356

Query: 64  LAELTSLAFFDVSHNHL 80
           + ++ +L     +    
Sbjct: 357 VGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
              N + EI   ++    L  L+   N       L ++  T + +LD S NK+T ++   
Sbjct: 134 CARNTLTEID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKIT-ELD-- 186

Query: 64  LAELTSLAFFDVSHNHL 80
           +++   L   +   N++
Sbjct: 187 VSQNKLLNRLNCDTNNI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
                + EI   +     L               L +++ T +  LD  +  +T ++   
Sbjct: 261 CIQTDLLEID--LTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGIT-ELD-- 313

Query: 64  LAELTSLAFFDVSHNHL 80
           L++   L +  +++  L
Sbjct: 314 LSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
             +N + EI   +  L  L   + S N L     L +S L+ + +L      L  +I   
Sbjct: 219 CSSNKLTEID--VTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDLL-EID-- 270

Query: 64  LAELTSLAFFDVSHN 78
           L   T L +F     
Sbjct: 271 LTHNTQLIYFQAEGC 285

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 22 LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80
            +   +   ++    ++   L  + SLD  ++ +T  +   + +LT L     + N++
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNI 76

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           LD N + ++ +S+  LK L++L+L +N +     L   +L  +ESL L +NK+T      
Sbjct: 94  LDENKIKDL-SSLKDLKKLKSLSLEHNGISDINGL--VHLPQLESLYLGNNKIT--DITV 148

Query: 64  LAELTSLAFFDVSHNHLR 81
           L+ LT L    +  N + 
Sbjct: 149 LSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L NN + +I T ++ L  L TL+L +N +   +P  L+ LT +++L LS N ++    + 
Sbjct: 138 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS--DLRA 192

Query: 64  LAELTSLAFFDVSHNHL 80
           LA L +L   ++     
Sbjct: 193 LAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 5e-08
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            +N+ +  +   I  L  +  L L+ N L    P  L+NL  +  L L  NK+   +   
Sbjct: 50  ANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SS 104

Query: 64  LAELTSLAFFDVSHNHLR 81
           L +L  L    + HN + 
Sbjct: 105 LKDLKKLKSLSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 9e-08
 Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 2  ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           +  +  + +I     +       NL   ++   +    + L  I+ +  +++ +   + 
Sbjct: 4  TITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV- 58

Query: 62 QQLAELTSLAFFDVSHNHLR 81
          Q +  L ++    ++ N L 
Sbjct: 59 QGIQYLPNVTKLFLNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L  N + ++  ++A LK L  L L +           SNL V  ++  +   L    P+ 
Sbjct: 182 LSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEI 238

Query: 64  LAELTSLAFFDVSHNHL 80
           +++       +V  +  
Sbjct: 239 ISDDGDYEKPNVKWHLP 255

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N + +I  +    L  L  LNLS N L         NL  +E LDLS N +   +  
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGD 364

Query: 63  QL-AELTSLAFFDVSHNHLRGAIPQGTQFSTFAND---WFAGNPGLC 105
           Q    L +L    +  N L+ ++P G  F    +    W   NP  C
Sbjct: 365 QSFLGLPNLKELALDTNQLK-SVPDGI-FDRLTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 3   LLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI- 60
           +        I  +    L  L  L L  N          + L  +E L L+   L G + 
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL 120

Query: 61  -PQQLAELTSLAFFDVSHNHLRGAIPQG 87
                  LTSL    +  N+++   P  
Sbjct: 121 SGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 3   LLDNNFVGEIPTSIASLK--GLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
               NF      +   L+  G++T +LS + +   +    S+ T +E L L+ N++  +I
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KI 314

Query: 61  PQQ-LAELTSLAFFDVSHNHLRGAIPQGT 88
                  LT L   ++S N L G+I    
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFL-GSIDSRM 342

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 14/84 (16%)

Query: 9  VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP----QQL 64
          V E+P  +        ++LS N++      + S L  ++ L +        I     + L
Sbjct: 25 VPELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78

Query: 65 AELTSLAFFDVSHNHLRGAIPQGT 88
          + L  L    + +N     +  G 
Sbjct: 79 SSLIIL---KLDYNQFL-QLETGA 98

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           +  N       + I SL  L+ L +S+N ++            +E LDLS NKL      
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH 87

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
               L  L   D+S N    A+P   +F   + 
Sbjct: 88  PTVNLKHL---DLSFNAFD-ALPICKEFGNMSQ 116

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 18  SLKGLQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVS 76
             K L +LN+S+N L   I   L   + V   LDL SNK+   IP+Q+ +L +L   +V+
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKV---LDLHSNKIK-SIPKQVVKLEALQELNVA 452

Query: 77  HNHLRGAIPQGT 88
            N L+ ++P G 
Sbjct: 453 SNQLK-SVPDGI 463

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 4   LDNNFVGEIPTSI---ASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIESLDLSSNKLTGQ 59
           L  N + E+         +K LQ L++S N++         S    + SL++SSN LT  
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIPQGT 88
           I + L     +   D+  N ++ +IP+  
Sbjct: 415 IFRCL--PPRIKVLDLHSNKIK-SIPKQV 440

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 15/64 (23%), Positives = 25/64 (39%)

Query: 18  SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
               +   N + +  R    L  S ++    LD S+N LT  + +    LT L    +  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 78  NHLR 81
           N L+
Sbjct: 358 NQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLT--LSNLTVIESLDLSSNKLTGQIP 61
           L +N + +I         L+ L+LS N     +P+     N++ ++ L LS+  L     
Sbjct: 76  LSHNKLVKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSV 132

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGT 88
             +A L       V             
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEG 159

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA 71
          +            LN+S N +       + +L+ +  L +S N++             L 
Sbjct: 19 LSQK------TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 72 FFDVSHNHLR 81
          + D+SHN L 
Sbjct: 73 YLDLSHNKLV 82

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLR--GYIPLTLSNLTVIESLDLSSNKLTGQI 60
             +N     +  +   L  L+TL L  N L+    I    + +  ++ LD+S N ++   
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 61  PQQL-AELTSLAFFDVSHNHL 80
            +   +   SL   ++S N L
Sbjct: 391 KKGDCSWTKSLLSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN 54
           L +N +  IP  +  L+ LQ LN+++N L+         LT ++ + L +N
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L NN + E+       L+ L +L L  N +          L  ++ L L++NK+   +  
Sbjct: 63  LSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRV 121

Query: 63  QL-AELTSLAFFDVSHNHLRGAIPQGTQFSTFAND---WFAGNPGLC 105
               +L +L    +  N L+  I +GT FS          A NP +C
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQ-TIAKGT-FSPLRAIQTMHLAQNPFIC 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 4   LDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L+ N +  IP  + +  K L+ ++LSNN +    P     L  + SL L  NK+T     
Sbjct: 39  LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
               L SL    ++ N +   +    
Sbjct: 99  LFEGLFSLQLLLLNANKIN-CLRVDA 123

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 15/81 (18%)

Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP----QQLAEL 67
          +P +I        + L  N ++   P   S    +  +DLS+N+++ ++     Q L  L
Sbjct: 30 LPETI------TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 68 TSLAFFDVSHNHLRGAIPQGT 88
           SL    +  N +   +P+  
Sbjct: 83 NSL---VLYGNKIT-ELPKSL 99

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           LD N V ++ +S+  LK L++L+L +N +       L +L  +ESL L +NK+T      
Sbjct: 97  LDENKVKDL-SSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT--DITV 151

Query: 64  LAELTSLAFFDVSHNHLR 81
           L+ LT L    +  N + 
Sbjct: 152 LSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L NN + +I T ++ L  L TL+L +N +   +P  L+ LT +++L LS N ++  + + 
Sbjct: 141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RA 195

Query: 64  LAELTSLAFFDVSHNHL 80
           LA L +L   ++     
Sbjct: 196 LAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
            +N+ +  +   I  L  +  L L+ N L    P  L+NL  +  L L  NK+   +   
Sbjct: 53  ANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DL-SS 107

Query: 64  LAELTSLAFFDVSHNHLR 81
           L +L  L    + HN + 
Sbjct: 108 LKDLKKLKSLSLEHNGIS 125

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 10/80 (12%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 2  ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           +     + +I  S  +       NL   ++   +    + L  I+ +  +++ +   + 
Sbjct: 7  TITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SV- 61

Query: 62 QQLAELTSLAFFDVSHNHLR 81
          Q +  L ++    ++ N L 
Sbjct: 62 QGIQYLPNVTKLFLNGNKLT 81

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N +  +P    +L  L  L++S N L       L  L  ++ L L  N+L    P  
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGT 88
           L     L    +++N+L   +P G 
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGL 167

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +     +       L  LNL    L   +      L V+ +LDLS N+L   +P 
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPL 94

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
               L +L   DVS N L  ++P G 
Sbjct: 95  LGQTLPALTVLDVSFNRLT-SLPLGA 119

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  +P  +      L+ L+L+NNNL       L+ L  +++L L  N L   IP+
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189

Query: 63  QLAELTSLAFFDVSHN 78
                  L F  +  N
Sbjct: 190 GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 4  LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           D   +  +P  +   K    L+LS N L  +   TL   T +  L+L   +LT ++   
Sbjct: 17 CDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-V 72

Query: 64 LAELTSLAFFDVSHNHLR 81
             L  L   D+SHN L+
Sbjct: 73 DGTLPVLGTLDLSHNQLQ 90

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           LD N    +P  +++ K L  ++LSNN +      + SN+T + +L LS N+L    P+ 
Sbjct: 38  LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97

Query: 64  LAELTSLAFFDVSHNHLRGAIPQG 87
              L SL    +  N +   +P+G
Sbjct: 98  FDGLKSLRLLSLHGNDIS-VVPEG 120

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 4  LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
          L    V ++  S   L G+Q  N  N+N++      +   T ++ L LS N+++  +   
Sbjct: 26 LGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS-DLS-P 80

Query: 64 LAELTSLAFFDVSHNHLR 81
          L +LT L    V+ N L+
Sbjct: 81 LKDLTKLEELSVNRNRLK 98

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L +N + ++ + +  L  L+ L+++ N L+    +  + L     L L +N+L       
Sbjct: 70  LSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACL---SRLFLDNNELRD--TDS 123

Query: 64  LAELTSLAFFDVSHNHLR 81
           L  L +L    + +N L+
Sbjct: 124 LIHLKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 9/79 (11%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 3  LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
          +     + ++      L      NL   ++   +      L+ +++ +  ++ +   +  
Sbjct: 3  IQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SL-A 57

Query: 63 QLAELTSLAFFDVSHNHLR 81
           +   T+L    +SHN + 
Sbjct: 58 GMQFFTNLKELHLSHNQIS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + NN +  I   +  L  L+ L+L  N +       L+ L  +  +DL+  K   +  + 
Sbjct: 135 IRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKY 191

Query: 64  LAELTSL 70
             EL   
Sbjct: 192 QPELYIT 198

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 4   LDN--NFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           LDN  +  G+I    A    L+ L+L N  L   +   L  L  ++ L+LS N++ G + 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGGLD 88

Query: 62  QQLAELTSLAFFDVSHNHL 80
               +L +L   ++S N L
Sbjct: 89  MLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT--GQIP 61
           L N  +  + +++  L  L+ L LS N + G + +    L  +  L+LS NKL     + 
Sbjct: 56  LINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL- 113

Query: 62  QQLAELTSLAFFDVSHN 78
           + L +L  L   D+ + 
Sbjct: 114 EPLKKLECLKSLDLFNC 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 4   LDNN--FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           LDN+    G++       + L+ L+  N  L   I   L  L  ++ L+LS N+++G + 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLE 81

Query: 62  QQLAELTSLAFFDVSHNHLR 81
               +  +L   ++S N ++
Sbjct: 82  VLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQ 62
             N  +  I  ++  L  L+ L LS+N + G + +       +  L+LS NK+      +
Sbjct: 49  TINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107

Query: 63  QLAELTSLAFFDVSHN 78
            L +L +L   D+ + 
Sbjct: 108 PLKKLENLKSLDLFNC 123

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 1   IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTG 58
           I +  +  + ++ +    +L  +  + + N     YI    L  L +++ L + +  L  
Sbjct: 60  IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK- 118

Query: 59  QIPQQ--LAELTSLAFFDVSHNHLRGAIPQGT 88
             P    +         +++ N    +IP   
Sbjct: 119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 4   LDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTGQIP 61
           L    +  IP+ + ++L  +  + +S +     +   +  NL+ +  +++ + +    I 
Sbjct: 38  LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97

Query: 62  QQ-LAELTSLAFFDVSHNHLRGAIPQGTQFS 91
              L EL  L F  + +  L+   P  T+  
Sbjct: 98  PDALKELPLLKFLGIFNTGLK-MFPDLTKVY 127

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 3   LLDNNFVGEIPT-SIASL-KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + DN ++  IP  +   L     TL L NN     +     N T ++++ L+ NK    I
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVI 195

Query: 61  PQQ-LAELTS-LAFFDVSHNHLRGAIPQGT 88
            +     + S  +  DVS   +  A+P   
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 14  TSIASL-KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL-AELTSLA 71
             I SL    QTL L   +LR       SNL  I  + +S +    Q+       L+ + 
Sbjct: 24  QRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 72  FFDVSHNHLRGAIPQGT 88
             ++ +      I    
Sbjct: 84  HIEIRNTRNLTYIDPDA 100

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 4   LDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L+NN    +  +     L  L+ +N SNN +           + +  + L+SN+L     
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGT 88
           +    L SL    +  N +   +   +
Sbjct: 99  KMFKGLESLKTLMLRSNRIT-CVGNDS 124

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   ILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           I   NN + +I         G+  + L++N L          L  +++L L SN++T  +
Sbjct: 62  INFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CV 120

Query: 61  PQQL-AELTSLAFFDVSHNHLRGAIPQGT 88
                  L+S+    +  N +   +  G 
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLT-LSNLTVIESLDLSSNKLTGQIPQ 62
           L    +  I    A+L     ++ S+N +R    L     L  +++L +++N++      
Sbjct: 26  LRGYKIPVIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNNNRICRIGEG 82

Query: 63  QLAELTSLAFFDVSHNHLR 81
               L  L    +++N L 
Sbjct: 83  LDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT--G 58
            I   +N + ++      L+ L+TL ++NN +          L  +  L L++N L   G
Sbjct: 46  AIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 59  QIPQQLAELTSLAFFDVSHN 78
            +   LA L SL +  +  N
Sbjct: 105 DL-DPLASLKSLTYLCILRN 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIP 61
           L  N +  +     + L  LQ L     NL       + +L  ++ L+++ N +   ++P
Sbjct: 83  LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGT 88
           +  + LT+L   D+S N ++ +I    
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 4   LDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPL----TLSNLTVIE-SLDLSSNKL 56
           + +N +          +L  L+ L+LS+N ++  I       L  + ++  SLDLS N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 57  TGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT 88
              I     +   L    +  N L+ ++P G 
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLK-SVPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 15/81 (18%)

Query: 12 IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP----QQLAEL 67
          +P S       + L+LS N LR     +  +   ++ LDLS  ++   I     Q L+ L
Sbjct: 26 LPFS------TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 68 TSLAFFDVSHNHLRGAIPQGT 88
          ++L    ++ N ++ ++  G 
Sbjct: 79 STL---ILTGNPIQ-SLALGA 95

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L  N + +I +S++ ++ L+ L+L  N ++  I    +    +E L +S N++   +   
Sbjct: 55  LSTNNIEKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SG 110

Query: 64  LAELTSLAFFDVSHNHL 80
           + +L +L    +S+N +
Sbjct: 111 IEKLVNLRVLYMSNNKI 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLR---GYIPLTLSNLTVIESLDLSSNKLTGQI 60
                + ++  ++++LK  + L LS NN+          LS +  +  L L  N +  +I
Sbjct: 32  GMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRNLIK-KI 85

Query: 61  PQQLAELTSLAFFDVSHNHLR 81
               A   +L    +S+N + 
Sbjct: 86  ENLDAVADTLEELWISYNQIA 106

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)

Query: 22  LQTLNLSNNNLRGYIPLTL-SNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL 80
           +  LNLS+N L G +   L   + V   LDL +N++   IP+ +  L +L   +V+ N L
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPPKVKV---LDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

Query: 81  RGAIPQGT 88
           + ++P G 
Sbjct: 486 K-SVPDGV 492

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 4   LDNNFVGEI-PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N + E+    I+ L  L+ L LS+N +R            +E LD+S N+L   I  
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISC 117

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN 95
               + SL   D+S N     +P   +F     
Sbjct: 118 C--PMASLRHLDLSFNDFD-VLPVCKEFGNLTK 147

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 10/64 (15%), Positives = 22/64 (34%)

Query: 18  SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH 77
               +    LS ++      +   + +    L+ + N  T  + Q  + L  L    +  
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

Query: 78  NHLR 81
           N L+
Sbjct: 387 NGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 15/81 (18%)

Query: 11  EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP----QQLAE 66
           ++P         + L+LS N++       +S L+ +  L LS N++   +         +
Sbjct: 49  DLPPR------TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101

Query: 67  LTSLAFFDVSHNHLRGAIPQG 87
           L  L   DVSHN L+  I   
Sbjct: 102 LEYL---DVSHNRLQ-NISCC 118

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTV----IESLDLSSNKLTGQ 59
           L  N +          K + +L   + +L                 I  L+LSSN LTG 
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 60  IPQQLAE-LTSLAFFDVSHNHLRGAIPQG 87
           + + L   +  L   D+ +N +  +IP+ 
Sbjct: 444 VFRCLPPKVKVL---DLHNNRIM-SIPKD 468

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN 54
           L NN +  IP  +  L+ LQ LN+++N L+         LT ++ + L  N
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 3   LLDNNFVGEIPTSIAS---LKGLQTLNLSNNNL--RGYIPL--TLSNLTVIESLDLSSNK 55
           ++D      +         L  L+T+++S   L   G   L   +  +  ++ +++  N 
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 56  LTGQIPQQLAE 66
           L+ ++ ++L +
Sbjct: 319 LSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 18  SLKGLQTLNLSNNNLRGYIPLTLSN---LTVIESLDLSSNKLTGQIPQQLAE----LTSL 70
               L+ L + +   +  +         L  +E++D+S+  LT +  + L +    +  L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 71  AFFDVSHNHL 80
            F ++ +N+L
Sbjct: 310 KFINMKYNYL 319

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 2  ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L   + V EIP+ +   +    L      LR       S    +E +++S N +   I 
Sbjct: 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71

Query: 62 QQ-LAELTSLAFFDVSH-NHLRGAIPQGT 88
              + L  L    +   N+L   I    
Sbjct: 72 ADVFSNLPKLHEIRIEKANNLL-YINPEA 99

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 1   IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           + L DNN + E+P  +     G   L++S   +       L NL  + +    + K   +
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---K 238

Query: 60  IPQQLAELTSLAFFDVSHN 78
           +P  L +L +L    +++ 
Sbjct: 239 LP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 3   LLDNNFVGEIPT-SIASLKG-LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + DN  +  I   S   L      L L+ N ++       +   + E     +N L  ++
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-EL 193

Query: 61  PQQ-LAELTSLAFFDVSHNHLRGAIPQGT 88
           P       +     D+S   +  ++P   
Sbjct: 194 PNDVFHGASGPVILDISRTRIH-SLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIESLDLSSNKLTGQ 59
           I+ L+ N + EI  S  +   L  LNLS+NN    +P       +    LD+S  ++   
Sbjct: 158 ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217

Query: 60  IPQQLAELTSLAFFDVSHN 78
               L  L  L      + 
Sbjct: 218 PSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 1   IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
           I +   N +  I      +L  LQ L +SN  ++    +   +      LD+  N     
Sbjct: 84  IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT 143

Query: 60  IPQQ-LAELTS-LAFFDVSHNHLRGAIPQGT 88
           I +     L+       ++ N ++  I    
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 14/91 (15%)

Query: 4   LDNNFVGE-----IPTSIASLKGLQTLNLSNNNL--RGYIPL---TLSNLTVIESLDLSS 53
           L N  +       + +++ +L  LQ L+LS+N L   G   L    L     +E L L  
Sbjct: 92  LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151

Query: 54  NKLTGQIPQQLAEL----TSLAFFDVSHNHL 80
             L+    + LA +           VS+N +
Sbjct: 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 14/91 (15%)

Query: 4   LDNNFVGE-----IPTSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTV-IESLDLSS 53
           L+   +       + + + +    + L +SNN++       +   L +    +E+L L S
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 54  NKLTGQIPQQLAEL----TSLAFFDVSHNHL 80
             +T    + L  +     SL    +  N L
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 14/91 (15%)

Query: 4   LDNNFVGE-----IPTSIASLKGLQTLNLSNNNLR--GYIPLT---LSNLTVIESLDLSS 53
           +    +       +   + + + L+ L+L+ N L   G   L    L     +ESL + S
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322

Query: 54  NKLTGQIPQQLAEL----TSLAFFDVSHNHL 80
              T       + +      L    +S+N L
Sbjct: 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 4   LDNNFVGE-----IPTSIASLKGLQTLNLSNNNLR--GYIPL---TLSNLTVIESLDLSS 53
           + +            + +A  + L  L +SNN L   G   L        +V+  L L+ 
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 54  NKLTGQIPQQLAEL----TSLAFFDVSHNHL 80
             ++      LA       SL   D+S+N L
Sbjct: 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 11/88 (12%)

Query: 4  LDNNFVGE--IPTSIASLKGLQTLNLSNNNL--RGYIPL--TLSNLTVIESLDLSSNKLT 57
          +    + +      +  L+  Q + L +  L       +   L     +  L+L SN+L 
Sbjct: 10 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69

Query: 58 GQIPQQLAEL-----TSLAFFDVSHNHL 80
                + +        +    + +  L
Sbjct: 70 DVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L  N +  +P  +   L  L+ L L NN L+         LT +++L L +N+L      
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

Query: 63  QLAELTSLAFFDVSHN 78
               L  L    +  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           LD N +  +P  +  SL  L  L+L  N L+         LT ++ L L +N+L      
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGT 88
              +LT L    + +N L+  +P+G 
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGA 200

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 12  IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP----QQLAEL 67
           IP         + L+L +N L          LT +  L L+ NKL   +P    ++L  L
Sbjct: 35  IPAD------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 68  TSLAFFDVSHNHLRGAIPQG 87
            +L    V+ N L+ A+P G
Sbjct: 88  ETL---WVTDNKLQ-ALPIG 103

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 4   LDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT---GQ 59
           L +N +  +P+     L  L+ L L++N L+         L  +E+L ++ NKL      
Sbjct: 44  LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103

Query: 60  IPQQLAELTSLAFFDVSHNHLRGAIPQG 87
           +  QL  L  L    +  N L+ ++P  
Sbjct: 104 VFDQLVNLAEL---RLDRNQLK-SLPPR 127

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 19  LKGLQTLNLSNNNL--RGYIPLT---LSNLTVIESLDLSSNKLTGQIPQQLAEL----TS 69
               + L L  N+L       L    L +   I +L LS+N LT      L E     TS
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 70  LAFFDVSHNHLR 81
           +    + H  L 
Sbjct: 185 VTHLSLLHTGLG 196

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 4   LDNNFVGE-----IPTSIASLKGLQTLNLSNNNLR-----GYIPLTLSNLTVIESLDLSS 53
              N +          +  S + L T+ +  N +R       +   L+    ++ LDL  
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 54  NKLTGQ----IPQQLAELTSLAFFDVSHNHLR--GAI 84
           N  T      +   L    +L    ++   L   GA 
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 28/105 (26%)

Query: 4   LDNNFVG----EIPTSIASL-------KGLQTLNLSNNNL--RGYIPLT--LSNLTVIES 48
             + F G    EIP ++  L         L T+ LS+N        PL   LS  T +E 
Sbjct: 67  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126

Query: 49  LDLSSNKLT-------------GQIPQQLAELTSLAFFDVSHNHL 80
           L L +N L                + ++      L       N L
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 33/153 (21%)

Query: 4   LDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L++N +G I +      L  L  L L  N L G  P      + I+ L L  NK+  +I 
Sbjct: 36  LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EIS 94

Query: 62  QQL-AELTSLAFFDVSHNHLRGAIPQGTQFSTFAN------DWFAGNPGLC--------- 105
            ++   L  L   ++  N +   +  G    +F +         A NP  C         
Sbjct: 95  NKMFLGLHQLKTLNLYDNQIS-CVMPG----SFEHLNSLTSLNLASNPFNCNCHLAWFAE 149

Query: 106 ------GEPLSGKCGNSE---ASPAEDDPPSEF 129
                     + +CG          +D P SEF
Sbjct: 150 WLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.52
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.49
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.44
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.43
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.43
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.41
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.41
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.4
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.4
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.4
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.3
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.3
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.3
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.3
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.3
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.26
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.23
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.22
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.2
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.1
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.03
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.03
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.02
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.95
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.93
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.93
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.92
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.8
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.82
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.81
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.12
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.89
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.83
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.7
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	95.09
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	95.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.26
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	92.79
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	80.84

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=8.4e-21  Score=164.23  Aligned_cols=116  Identities=45%  Similarity=0.702  Sum_probs=110.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |||++|+++|.+|..+++++.|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|+.+|+++|++
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSE  117 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C~~~~  117 (185)
                      +|.+|...++.++....+.|||.+|+.|.. .|....
T Consensus       717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~  752 (768)
T 3rgz_A          717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN  752 (768)
T ss_dssp             EEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred             cccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence            999999999999999999999999999876 886554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=8.6e-19  Score=153.04  Aligned_cols=105  Identities=29%  Similarity=0.330  Sum_probs=87.9

Q ss_pred             CEecCCcCC-----CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEe
Q 039243            1 IILLDNNFV-----GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDV   75 (185)
Q Consensus         1 L~L~~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l   75 (185)
                      |+|++|.++     +..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..|..+.  ++|+.|++
T Consensus       456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L  533 (844)
T 3j0a_A          456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI  533 (844)
T ss_dssp             CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred             ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence            466777765     34456688889999999999999988889999999999999999999976666554  78999999


Q ss_pred             cCCcCcCCCCCCCcccccccccccCCCCCCCCCC
Q 039243           76 SHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        76 ~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      ++|++++..|..  +..+..+.+.+||+.|+|+.
T Consensus       534 s~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          534 SRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             EEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             CCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            999999888865  45788899999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=1e-17  Score=124.63  Aligned_cols=108  Identities=18%  Similarity=0.239  Sum_probs=80.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++++..|..|..+++|+.|++++|.+
T Consensus        62 L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A           62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             EECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence            46677777776666777777777777777777766677777777888888888888776677777777888888888888


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      ++..|..+ .+.++..+.+.+|++.|+|+
T Consensus       142 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          142 TTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            77666544 46667777788888887664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=120.80  Aligned_cols=107  Identities=25%  Similarity=0.350  Sum_probs=95.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|+++ .+|..|..+++|+.|+|++|.|++..+..|..+++|++|++++|+|++..|..|..+++|+.|++++|.+
T Consensus        36 L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             EECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC
Confidence            578899998 6778999999999999999999988888999999999999999999988888899999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      +...+..+ .+..+..+.+.+||+.|+|.
T Consensus       115 ~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          115 SVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            96665443 57788999999999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.2e-17  Score=121.64  Aligned_cols=109  Identities=23%  Similarity=0.322  Sum_probs=97.5

Q ss_pred             CEecCCcCCCCCch-hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|++++..+. .|..+++|+.|+|++|.|++..|..|..+++|++|++++|+|++..|..|..+++|+.|++++|.
T Consensus        34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            57889999877765 48899999999999999998889999999999999999999998888889999999999999999


Q ss_pred             CcCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      +++..|... .+.++..+.+.+|++.|+|+.
T Consensus       114 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            998888755 577889999999999998753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=2e-17  Score=123.06  Aligned_cols=108  Identities=20%  Similarity=0.268  Sum_probs=74.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|+.|.++++|+.|+|++|.|+...+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+
T Consensus        61 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             EECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            45666777766666777777777777777777755555566777777777777777766666777777777777777777


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      ++..+..+ .+.++..+.+.+|++.|+|.
T Consensus       141 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          141 QTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            76555433 35667777778888777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=2.8e-17  Score=128.32  Aligned_cols=111  Identities=33%  Similarity=0.515  Sum_probs=100.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..|..|..+++|+.|+|++|.+++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++|.+
T Consensus       202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence            57888999888899999999999999999999966666 88899999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKC  113 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C  113 (185)
                      +|.+|....+..+..+.+.+|+++|+.|.. .|
T Consensus       281 ~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             EEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999888899999999999999997764 45

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=2.3e-16  Score=117.91  Aligned_cols=106  Identities=25%  Similarity=0.346  Sum_probs=55.4

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+....+..|..+++|+.|+|++|.|++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus        70 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           70 YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             ECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            34444444433344444555555555555555444444455555555555555555 44555555556666666666655


Q ss_pred             CCCCCCC-cccccccccccCCCCCCCCC
Q 039243           82 GAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        82 ~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      +..+... .+.++..+.+.+||+.|.|+
T Consensus       149 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          149 SIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            4433322 34556666666676666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.67  E-value=2.6e-16  Score=112.52  Aligned_cols=105  Identities=24%  Similarity=0.360  Sum_probs=91.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      +++++|.++. +|..+.  ++|+.|+|++|.|++..|..|..+++|++|++++|+|++..+..|..+++|+.|++++|.+
T Consensus        14 l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           14 VDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             EECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            4788999885 565553  8899999999999988899999999999999999999977777788999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      ++..+..+ .+.++..+.+.+|++.|.|+
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            97766543 67889999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=2.7e-16  Score=112.85  Aligned_cols=108  Identities=23%  Similarity=0.285  Sum_probs=90.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.+++++|.+
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence            57888999887777788999999999999999977777788999999999999999977667788899999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      ++..+... .+.++..+.+.+|++.|.++
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            86655543 46788888999999888654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.66  E-value=1.2e-16  Score=134.30  Aligned_cols=108  Identities=26%  Similarity=0.317  Sum_probs=96.1

Q ss_pred             CEecCCcC-CCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNF-VGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++|++ .+..|+.|..+++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|+.|++++|+
T Consensus       474 L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred             hhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence            46777764 44577889999999999999999999999999999999999999999998888899999999999999999


Q ss_pred             CcCCCCCCCc-c-cccccccccCCCCCCCCC
Q 039243           80 LRGAIPQGTQ-F-STFANDWFAGNPGLCGEP  108 (185)
Q Consensus        80 l~~~~p~~~~-~-~~l~~~~~~~n~~~c~~~  108 (185)
                      +++..|.... + .++..+.+++||+.|+|.
T Consensus       554 l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          554 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             CCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            9988887653 3 578899999999999985

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.65  E-value=5.5e-16  Score=119.85  Aligned_cols=108  Identities=24%  Similarity=0.218  Sum_probs=80.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+..|..+++|+.|++++|.+
T Consensus       105 L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence            46777777776667777777888888888888766666677778888888888888755555567777888888888888


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      +...+.......+..+.+.+||+.|+|.
T Consensus       185 ~~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          185 YTIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             CCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             CccChhhcccccCCeEEeCCCCccCcCc
Confidence            7444344455667888899999999774

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=6.8e-16  Score=110.84  Aligned_cols=105  Identities=24%  Similarity=0.342  Sum_probs=90.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      +++++|.+. .+|..+.  ++|+.|+|++|.|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|++++|.+
T Consensus        17 l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           17 VNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            467888886 5666554  8999999999999988899999999999999999999976666678999999999999999


Q ss_pred             cCCCCCC-CcccccccccccCCCCCCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      ++..+.. ..+.++..+.+.+|++.|.|.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             ceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9766653 357889999999999998764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=1.7e-15  Score=114.52  Aligned_cols=100  Identities=22%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.++
T Consensus        65 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           65 NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            45555555555555555555555555555555444444555555555555555555433333444555555555555554


Q ss_pred             CCCCCCC-cccccccccccCC
Q 039243           82 GAIPQGT-QFSTFANDWFAGN  101 (185)
Q Consensus        82 ~~~p~~~-~~~~l~~~~~~~n  101 (185)
                      +..+..+ .+.++..+++.+|
T Consensus       145 ~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A          145 SIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCHHHcCcCcCCCEEECCCC
Confidence            3333221 2334444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=1.9e-15  Score=110.96  Aligned_cols=106  Identities=24%  Similarity=0.287  Sum_probs=52.4

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.++
T Consensus        58 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           58 YLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            34445444444444444555555555555555444444455555555555555555443334455555555555555555


Q ss_pred             CCCCCC-CcccccccccccCCCCCCCC
Q 039243           82 GAIPQG-TQFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        82 ~~~p~~-~~~~~l~~~~~~~n~~~c~~  107 (185)
                      +..+.. ..+.++..+.+.+|++.|.+
T Consensus       138 ~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A          138 SVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             eeCHHHhccCCCccEEEecCCCeecCC
Confidence            433332 23445555555666555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.62  E-value=1.1e-15  Score=120.45  Aligned_cols=105  Identities=17%  Similarity=0.180  Sum_probs=93.1

Q ss_pred             EecCC-cCCCCCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            2 ILLDN-NFVGEIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         2 ~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      +++++ ++++ +|. +..+++|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|..+++|+.|+|++|.
T Consensus        14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            56676 7775 777 99999999999996 99998888999999999999999999999888999999999999999999


Q ss_pred             CcCCCCCCCcccccccccccCCCCCCCCC
Q 039243           80 LRGAIPQGTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        80 l~~~~p~~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      |++..+..+....+..+.+.+|++.|+|.
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             cceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            99777666655558899999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=2.7e-15  Score=114.67  Aligned_cols=106  Identities=25%  Similarity=0.330  Sum_probs=52.7

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            44445554444444445555555555555555444444445555555555555555444444445555555555555555


Q ss_pred             CCCCCC-CcccccccccccCCCCCCCC
Q 039243           82 GAIPQG-TQFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        82 ~~~p~~-~~~~~l~~~~~~~n~~~c~~  107 (185)
                      +..|.. ..+.++..+.+.+|++.|.+
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ccCHHHHhCCcCCCEEEccCCCccccC
Confidence            444432 23445555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.61  E-value=3.3e-15  Score=114.03  Aligned_cols=107  Identities=22%  Similarity=0.229  Sum_probs=66.2

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.++
T Consensus       115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            45556666555555666666666666666666544455666666666666666666555555666666777777777666


Q ss_pred             CCCCCCC-cccccccccccCCCCCCCCC
Q 039243           82 GAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        82 ~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      +..+... .+..+..+.+.+||+.|+|.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          195 RVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            4444322 35566667777777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=3.5e-16  Score=113.90  Aligned_cols=108  Identities=19%  Similarity=0.329  Sum_probs=89.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|..|..+++|+.|+|++|.|++..+..|..+++|++|++++|++++..|..+..+++|+.+++++|.+
T Consensus        59 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             EECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            58999999999999999999999999999999988888899999999999999999988899999999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      .+..+-......+....+.++...|..|
T Consensus       139 ~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          139 NCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            9876632211112222344454555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.58  E-value=3.5e-15  Score=121.33  Aligned_cols=108  Identities=26%  Similarity=0.308  Sum_probs=83.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|.+
T Consensus       304 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL  383 (455)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence            46677777777777777778888888888888777777777888888888888888766677788888888888888888


Q ss_pred             cCCCCCC-CcccccccccccCCCCCCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      ++..+.. ..+..+..+.+.+|++.|.|+
T Consensus       384 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            7655544 356777888888888888876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=7.4e-15  Score=109.12  Aligned_cols=104  Identities=22%  Similarity=0.204  Sum_probs=90.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++..+..|..+++|+.|+|++|.|++..|..|..+++|++|++++|+|+...+..|..+++|+.|++++|.+
T Consensus        37 L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l  116 (220)
T 2v9t_B           37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI  116 (220)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCC
Confidence            57889999988888899999999999999999988899999999999999999999966666678899999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      ++..|..+ .+.++..+.+.+|...
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B          117 NCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CEeCHHHcCCCCCCCEEECCCCcCC
Confidence            98777654 5678888888888643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.56  E-value=7.4e-15  Score=104.95  Aligned_cols=86  Identities=26%  Similarity=0.281  Sum_probs=79.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|++|++++|+|++..+..|..+++|+.|++++|++
T Consensus        35 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            58999999999999999999999999999999988888889999999999999999977777899999999999999999


Q ss_pred             cCCCCC
Q 039243           81 RGAIPQ   86 (185)
Q Consensus        81 ~~~~p~   86 (185)
                      .+..+.
T Consensus       115 ~c~c~~  120 (170)
T 3g39_A          115 DCACSD  120 (170)
T ss_dssp             CTTBGG
T ss_pred             CCCchh
Confidence            977653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=1.5e-14  Score=107.97  Aligned_cols=103  Identities=25%  Similarity=0.285  Sum_probs=89.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++..|..|..+++|+.|+|++|.|+...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus        45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence            57899999999899999999999999999999877777789999999999999999977777788999999999999999


Q ss_pred             cCCCCCC-CcccccccccccCCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~~  104 (185)
                      + .+|.. ..+.++..+.+.+|...
T Consensus       125 ~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          125 T-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             C-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             c-ccCcccccCCCCCEEECCCCcCC
Confidence            9 45544 46778888889888644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.54  E-value=5e-15  Score=113.68  Aligned_cols=101  Identities=20%  Similarity=0.213  Sum_probs=57.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            35566666666566666666666666666666655555566666666666666666644444455566666666666666


Q ss_pred             cCCCCCCC-cccccccccccCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n  101 (185)
                      .+..|... .+..+..+.+.+|
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSS
T ss_pred             cccCHhHccCcccccEeeCCCC
Confidence            55544332 2344444444444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=1.1e-14  Score=122.20  Aligned_cols=103  Identities=19%  Similarity=0.085  Sum_probs=88.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |||++|+|++..+..|.++++|++|+|++|+|++..|+.|.++++|++|+|++|+|++..++.|.++++|++|++++|.+
T Consensus        57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred             EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence            68999999988888999999999999999999988888899999999999999999976667889999999999999999


Q ss_pred             cCCCCCC-CcccccccccccCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      ++..+.. ..+.++..+.+.+|..
T Consensus       137 ~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          137 ASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CCCChhhhhcCcccCeeccccCcc
Confidence            8766543 3567777888877754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=2.1e-14  Score=106.59  Aligned_cols=104  Identities=18%  Similarity=0.140  Sum_probs=90.6

Q ss_pred             CEecCCcCCCCCc-hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++|++++..| ..|..+++|+.|+|++|.|++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus        37 L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             EECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             EEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence            5788999987755 458899999999999999998888899999999999999999998888889999999999999999


Q ss_pred             CcCCCCCCC-cccccccccccCCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      +++..|..+ .+.++..+.+.+|...
T Consensus       117 l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A          117 ITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             CCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CCeECHhHcCCCccCCEEECCCCcCC
Confidence            998877654 5677888888888654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.53  E-value=2.1e-14  Score=102.98  Aligned_cols=85  Identities=24%  Similarity=0.253  Sum_probs=77.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|+|++..+..|..+++|+.+++++|.+
T Consensus        38 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             EEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCc
Confidence            58999999999999999999999999999999977777789999999999999999966666699999999999999999


Q ss_pred             cCCCC
Q 039243           81 RGAIP   85 (185)
Q Consensus        81 ~~~~p   85 (185)
                      .+..+
T Consensus       118 ~c~~~  122 (174)
T 2r9u_A          118 DCECR  122 (174)
T ss_dssp             CTTBG
T ss_pred             ccccc
Confidence            86554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.52  E-value=1e-14  Score=122.55  Aligned_cols=108  Identities=21%  Similarity=0.196  Sum_probs=87.4

Q ss_pred             CEecCCcCCC-CCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVG-EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.+++ .+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.
T Consensus       453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            4677777776 367778888888888888888888888888888899999999999988778888888899999999999


Q ss_pred             CcCCCCCCC-ccc-ccccccccCCCCCCCCCC
Q 039243           80 LRGAIPQGT-QFS-TFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        80 l~~~~p~~~-~~~-~l~~~~~~~n~~~c~~~~  109 (185)
                      ++. +|... .+. .+..+.+.+||+.|+|+.
T Consensus       533 l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          533 IET-SKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCC-EESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             Ccc-cCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            884 44433 344 488889999999998864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.52  E-value=2e-14  Score=117.16  Aligned_cols=107  Identities=20%  Similarity=0.250  Sum_probs=92.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++. | .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+
T Consensus       201 L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          201 LNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             EECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            46788888754 3 477888999999999999988899999999999999999999988888999999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      ++..+..+ .+.++..+.+.+||+.|+|..
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            96666543 477888999999999999864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.52  E-value=6.4e-14  Score=105.79  Aligned_cols=103  Identities=19%  Similarity=0.191  Sum_probs=73.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus        40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  119 (251)
T 3m19_A           40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL  119 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence            46777777777777777777777777777777777777777777777777777777766666677777777777777777


Q ss_pred             cCCCCCC-CcccccccccccCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      ++..+.. ..+..+..+.+++|..
T Consensus       120 ~~~~~~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A          120 KSLPSGVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcChhHhccCCcccEEECcCCcC
Confidence            7555543 2456667777776643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.51  E-value=2.5e-14  Score=116.25  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|+++. +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus       190 L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          190 LNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             EECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            4677787774 34 477888899999999999988899999999999999999999988888899999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      ++..+..+ .+..+..+.+.+||+.|+|..
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             CccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            97666543 577889999999999999853

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.51  E-value=1.3e-14  Score=125.50  Aligned_cols=103  Identities=25%  Similarity=0.444  Sum_probs=94.5

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +++.|.+.|.+|..+..+++|+.|||++|+++|.+|..++.+++|+.|++++|+++|.+|..++.+++|+.||+++|+++
T Consensus       614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence            34568888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC-cccccccccccCCCCC
Q 039243           82 GAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        82 ~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      |.+|... .+..+..+++++|+..
T Consensus       694 g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          694 GRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CcCChHHhCCCCCCEEECcCCccc
Confidence            9999765 5677888899988654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=1.8e-14  Score=111.53  Aligned_cols=103  Identities=18%  Similarity=0.238  Sum_probs=64.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccC-CCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRG-YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus       131 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             EECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            3566676666666666666777777777777664 456666666677777777776665556666666666666666666


Q ss_pred             CcCCCCCC-CcccccccccccCCCC
Q 039243           80 LRGAIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        80 l~~~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      +++..+.. ..+.++..+++++|..
T Consensus       211 l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          211 FFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             cCccChhhccCcccCCEeECCCCCC
Confidence            66444322 2345555666666644

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=1.1e-13  Score=101.49  Aligned_cols=104  Identities=20%  Similarity=0.185  Sum_probs=89.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus        33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  112 (208)
T 2o6s_A           33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL  112 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcC
Confidence            57899999988888889999999999999999977777789999999999999999976666788999999999999999


Q ss_pred             cCCCCCC-CcccccccccccCCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~~  104 (185)
                      ++..+.. ..+.++..+.+.+|...
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          113 QSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccCHhHhccCCcCCEEECCCCccc
Confidence            9766654 35778888888888644

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=4.4e-14  Score=98.35  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=86.7

Q ss_pred             CEecCCcCC-CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFV-GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|+.+++++|.
T Consensus        22 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~   99 (149)
T 2je0_A           22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK   99 (149)
T ss_dssp             EECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred             EEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc
Confidence            578999998 78888889999999999999999966  778999999999999999997789988889999999999999


Q ss_pred             CcCCC--CCCCcccccccccccCCCC
Q 039243           80 LRGAI--PQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        80 l~~~~--p~~~~~~~l~~~~~~~n~~  103 (185)
                      +++..  +....++.+..+.+.+|+.
T Consensus       100 i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A          100 IKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence            98642  3334567788888888853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=4.7e-14  Score=117.51  Aligned_cols=109  Identities=20%  Similarity=0.361  Sum_probs=93.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeeccccccc-CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            467888888888888888999999999999987 5788889999999999999999997778889999999999999999


Q ss_pred             CcCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      +++..|... .++.+..+.+.+|++.|.|+.
T Consensus       506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            997776643 577888899999999987754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.49  E-value=1.9e-14  Score=112.17  Aligned_cols=102  Identities=31%  Similarity=0.486  Sum_probs=57.4

Q ss_pred             CEecCCcCCC--CCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243            1 IILLDNNFVG--EIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH   77 (185)
Q Consensus         1 L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~   77 (185)
                      |+|++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+..+++|++|++++
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence            3455666665  5555666666666666663 555555565566666666666666666555555555555566666666


Q ss_pred             CcCcCCCCCCC-cccccccccccCCC
Q 039243           78 NHLRGAIPQGT-QFSTFANDWFAGNP  102 (185)
Q Consensus        78 N~l~~~~p~~~-~~~~l~~~~~~~n~  102 (185)
                      |.+.+.+|... .+.++..+.+.+|.
T Consensus       135 N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A          135 NALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             CccCCcCChHHhcCCCCCeEECcCCc
Confidence            65555554432 34444555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.48  E-value=3.3e-14  Score=116.44  Aligned_cols=108  Identities=20%  Similarity=0.191  Sum_probs=96.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|.+
T Consensus       229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred             EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence            47888999876667899999999999999999988888899999999999999999988899999999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      ++..+..+ .+.++..+.+.+||+.|+|.
T Consensus       309 ~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          309 TTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             ceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            97655443 56788999999999999874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=7.1e-14  Score=99.21  Aligned_cols=101  Identities=21%  Similarity=0.242  Sum_probs=85.9

Q ss_pred             CEecCCcCC-CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFV-GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+.|++++|.
T Consensus        29 L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  106 (168)
T 2ell_A           29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK  106 (168)
T ss_dssp             EECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS
T ss_pred             EECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc
Confidence            578899998 77888889999999999999999965  778999999999999999997788888889999999999999


Q ss_pred             CcCCC--CCCCcccccccccccCCCC
Q 039243           80 LRGAI--PQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        80 l~~~~--p~~~~~~~l~~~~~~~n~~  103 (185)
                      +++..  +....+..+..+.+.+|+.
T Consensus       107 l~~~~~~~~l~~l~~L~~L~l~~N~l  132 (168)
T 2ell_A          107 LKDISTLEPLKKLECLKSLDLFNCEV  132 (168)
T ss_dssp             CCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred             cCcchhHHHHhcCCCCCEEEeeCCcC
Confidence            98643  2334567788888888864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.47  E-value=2e-14  Score=104.74  Aligned_cols=85  Identities=26%  Similarity=0.282  Sum_probs=78.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|.++++|+.|+|++|.|++..|..|..+++|+.|++++|+++...+..|..+++|+.+++++|.+
T Consensus        59 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            58999999999899999999999999999999988888999999999999999999966666788999999999999999


Q ss_pred             cCCCC
Q 039243           81 RGAIP   85 (185)
Q Consensus        81 ~~~~p   85 (185)
                      .+...
T Consensus       139 ~C~c~  143 (193)
T 2wfh_A          139 YCDCN  143 (193)
T ss_dssp             ECSGG
T ss_pred             ecCCc
Confidence            86543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.47  E-value=2.6e-13  Score=103.67  Aligned_cols=101  Identities=23%  Similarity=0.240  Sum_probs=55.2

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            45555555555555555555666666666555555555555555666666666555444444555555666666666555


Q ss_pred             CCCCCC-CcccccccccccCCC
Q 039243           82 GAIPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        82 ~~~p~~-~~~~~l~~~~~~~n~  102 (185)
                      +..+.. ..+..+..+.+.+|.
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHHHhcCCccCCEEECCCCc
Confidence            444433 234455555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.46  E-value=7.7e-14  Score=110.79  Aligned_cols=80  Identities=21%  Similarity=0.270  Sum_probs=42.7

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|++++|.++
T Consensus        70 ~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A           70 LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            44555555544455555555555555555555444444555555555555555555444455555555555555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=1.1e-13  Score=109.82  Aligned_cols=104  Identities=21%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             CEecCCcCCCCCchhcc-CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++|++++..+..|. .+++|+.|+|++|.|++..+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|.
T Consensus        44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  123 (361)
T 2xot_A           44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH  123 (361)
T ss_dssp             EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc
Confidence            58899999988888887 89999999999999998888889999999999999999997777789999999999999999


Q ss_pred             CcCCCCCCC-cccccccccccCCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      +.+..|..+ .+..+..+.+++|...
T Consensus       124 i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          124 IVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccEECHHHhCCcccCCEEECCCCcCC
Confidence            997766554 5677888888888543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.44  E-value=9.6e-14  Score=118.20  Aligned_cols=93  Identities=19%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCC--cccccc
Q 039243           17 ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT--QFSTFA   94 (185)
Q Consensus        17 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~--~~~~l~   94 (185)
                      ..+++|+.|+|++|.++...+..|.++++|+.|++++|++++..+..|..+++|+.+++++|.+++..|...  .+..+.
T Consensus       533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  612 (680)
T 1ziw_A          533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT  612 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred             cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence            334444444444444442223345555666666666666664444445556666666666666665444322  356778


Q ss_pred             cccccCCCCCCCCCC
Q 039243           95 NDWFAGNPGLCGEPL  109 (185)
Q Consensus        95 ~~~~~~n~~~c~~~~  109 (185)
                      .+.+.+||+.|+|+.
T Consensus       613 ~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          613 ELDMRFNPFDCTCES  627 (680)
T ss_dssp             EEECTTCCCCBCCCC
T ss_pred             EEEccCCCcccCCcc
Confidence            888999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.43  E-value=4e-13  Score=105.38  Aligned_cols=102  Identities=21%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             CEecCCcCCCCCchhccC---------CcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCc
Q 039243            1 IILLDNNFVGEIPTSIAS---------LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA   71 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~   71 (185)
                      |+|++|++.+.+|..+..         +++|+.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~  232 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCC
Confidence            456666666666665543         677777777777777 66666777777777777777777 3555666777777


Q ss_pred             EEEecCCcCcCCCCCCC-cccccccccccCCCCC
Q 039243           72 FFDVSHNHLRGAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        72 ~l~l~~N~l~~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      .|++++|.+.+.+|... .+.++..+.+.+|...
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence            77777777666666543 4556666666666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.43  E-value=7.5e-14  Score=117.31  Aligned_cols=106  Identities=25%  Similarity=0.316  Sum_probs=66.1

Q ss_pred             EecCCcCCCC---CchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243            2 ILLDNNFVGE---IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         2 ~L~~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      ++++|.+.+.   .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..++.| .+++++|
T Consensus       455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            4455555441   12345555566666666666665556666666666666776666666666666666666 6777777


Q ss_pred             cCcCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           79 HLRGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        79 ~l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      .+++..|... .+..+..+.+.+||+.|+|+
T Consensus       534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          534 HISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            7665555432 35566777788888888664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.43  E-value=6.2e-13  Score=102.64  Aligned_cols=103  Identities=20%  Similarity=0.188  Sum_probs=77.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+. .+|..+..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++
T Consensus        82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            467777776 5566777788888888888888866677788888888888888888866666677788888888888888


Q ss_pred             cCCCCCCC-cccccccccccCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      ++..+..+ .+..+..+.+.+|...
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCC
Confidence            85544432 4667777778777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.41  E-value=9.6e-13  Score=100.32  Aligned_cols=102  Identities=22%  Similarity=0.282  Sum_probs=64.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.++...+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus        66 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  145 (270)
T 2o6q_A           66 LYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL  145 (270)
T ss_dssp             EECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence            45667777665555566677777777777777755555666677777777777777655555566666667777766666


Q ss_pred             cCCCCCC-CcccccccccccCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~  102 (185)
                      ++..+.. ..+.++..+.+.+|.
T Consensus       146 ~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A          146 QSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHhHccCCcccceeEecCCc
Confidence            6444332 234555555555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.41  E-value=2.8e-13  Score=96.11  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=84.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCC-chHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI-PQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.
T Consensus        54 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           54 LSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             EEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             EeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc
Confidence            57899999876  77899999999999999999878888888999999999999999532 2788899999999999999


Q ss_pred             CcCCCC----CCCcccccccccccCCCC
Q 039243           80 LRGAIP----QGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        80 l~~~~p----~~~~~~~l~~~~~~~n~~  103 (185)
                      +++..+    ....++.+..+.+.+|..
T Consensus       132 l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          132 VTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            996655    233567777777777753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.41  E-value=9e-13  Score=103.22  Aligned_cols=103  Identities=21%  Similarity=0.209  Sum_probs=60.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+
T Consensus       198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            355666666655566666666666666666666555556666666666666666666 5566666666666666666666


Q ss_pred             cCCCCCCCc-------ccccccccccCCCCC
Q 039243           81 RGAIPQGTQ-------FSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~~~-------~~~l~~~~~~~n~~~  104 (185)
                      ++..+..+.       ...+..+.+.+||..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CccChhHccccccccccccccceEeecCccc
Confidence            644333221       233445556666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=3.5e-13  Score=96.42  Aligned_cols=85  Identities=24%  Similarity=0.226  Sum_probs=76.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|.+
T Consensus        57 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            57899999988888889999999999999999987778889999999999999999966666678899999999999999


Q ss_pred             cCCCC
Q 039243           81 RGAIP   85 (185)
Q Consensus        81 ~~~~p   85 (185)
                      .+..|
T Consensus       137 ~~~~~  141 (177)
T 2o6r_A          137 DCSCP  141 (177)
T ss_dssp             CCCHH
T ss_pred             eccCc
Confidence            98766

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.41  E-value=4.5e-13  Score=97.61  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc-
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH-   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~-   79 (185)
                      |++++|.++.  ++.+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|. 
T Consensus        71 L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~  148 (197)
T 4ezg_A           71 LTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA  148 (197)
T ss_dssp             EEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTB
T ss_pred             EEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCC
Confidence            4677775543  3467778888888888888887677778888888888888888886677778888888888888887 


Q ss_pred             CcCCCCCCCcccccccccccCCC
Q 039243           80 LRGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        80 l~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      +. .+|....++++..+.+.+|.
T Consensus       149 i~-~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          149 IT-DIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             CC-CCGGGGGCSSCCEEECTTBC
T ss_pred             cc-ccHhhcCCCCCCEEECCCCC
Confidence            54 45544456667777777764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.40  E-value=5.4e-13  Score=111.47  Aligned_cols=106  Identities=25%  Similarity=0.369  Sum_probs=62.5

Q ss_pred             EecCCcCCCC--CchhccCCcccceeecccccccCCCcc-cccCC----------------------CCCCEEeCCCCcC
Q 039243            2 ILLDNNFVGE--IPTSIASLKGLQTLNLSNNNLRGYIPL-TLSNL----------------------TVIESLDLSSNKL   56 (185)
Q Consensus         2 ~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l----------------------~~L~~L~l~~N~l   56 (185)
                      +|++|.+++.  .|..+..+++|+.|++++|.+++.+|. .+..+                      ++|+.|++++|++
T Consensus       383 ~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l  462 (562)
T 3a79_B          383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI  462 (562)
T ss_dssp             ECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCC
T ss_pred             ECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcC
Confidence            4555555542  234455555566666666555542332 23333                      4666666666666


Q ss_pred             CCCCchHhhcCCCCcEEEecCCcCcCCCCC-CCcccccccccccCCCCCCCCC
Q 039243           57 TGQIPQQLAELTSLAFFDVSHNHLRGAIPQ-GTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        57 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      + .+|..+..+++|+.|++++|+++...+. ...+..+..+.+.+||+.|+|+
T Consensus       463 ~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          463 M-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             C-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             c-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            6 5566555777777777777777743333 2345667777777887777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.40  E-value=7.4e-13  Score=101.53  Aligned_cols=103  Identities=19%  Similarity=0.226  Sum_probs=84.9

Q ss_pred             CEecCCc-CCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNN-FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|. +....|..|..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus        85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            5788887 777668888899999999999999998878888999999999999999996666678888999999999999


Q ss_pred             CcCCCCCC-CcccccccccccCCCC
Q 039243           80 LRGAIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        80 l~~~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      +++..+.. ..+..+..+.+.+|..
T Consensus       165 l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          165 ISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccCHHHhcCccccCEEECCCCcc
Confidence            88665543 3567788888888754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.40  E-value=4.7e-13  Score=108.72  Aligned_cols=104  Identities=20%  Similarity=0.199  Sum_probs=94.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus       280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI  359 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred             EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence            47889999999999999999999999999999988899999999999999999999988889999999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      ++..|... .+..+..+.+.+|...
T Consensus       360 ~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          360 RALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccChhhccccccccEEECCCCccc
Confidence            98877654 5788889999998654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.40  E-value=8e-13  Score=103.69  Aligned_cols=105  Identities=19%  Similarity=0.226  Sum_probs=89.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus       188 L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             EEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             EECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence            578889888 77888999999999999999999 4666789999999999999999989999999999999999999988


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~  107 (185)
                      .+.+|... .+.++..+++.+|+..-..
T Consensus       266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          266 LLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             CCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             hhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            88888654 5677888889888765443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.39  E-value=8.2e-13  Score=103.30  Aligned_cols=98  Identities=21%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++++|.++. +|..+.  ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            455555553 333222  55556666666665555555555666666666666665444445555556666666666555


Q ss_pred             CCCCC-CCcccccccccccCCCC
Q 039243           82 GAIPQ-GTQFSTFANDWFAGNPG  103 (185)
Q Consensus        82 ~~~p~-~~~~~~l~~~~~~~n~~  103 (185)
                       .+|. ...+..+..+.+.+|+.
T Consensus       254 -~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          254 -KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             -SCCTTTTTCSSCCEEECCSSCC
T ss_pred             -cCChhhccCCCcCEEECCCCcC
Confidence             3332 22344555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=7.7e-13  Score=100.98  Aligned_cols=102  Identities=20%  Similarity=0.101  Sum_probs=70.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|++++..+..|.++++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus        33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence            46777777766666777777777777777777766666777777777777777777766666677777777777777777


Q ss_pred             cCCCCCC-CcccccccccccCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~  102 (185)
                      .+..+.. ..+..+..+.+.+|.
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A          113 ASLENFPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSC
T ss_pred             cccCchhcccCCCCCEEECcCCc
Confidence            6554422 244556666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=3.7e-13  Score=102.78  Aligned_cols=108  Identities=29%  Similarity=0.446  Sum_probs=74.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCC-CcccccCCCCCCEEeCCCCcCCCCCchHhhcCC-----------
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT-----------   68 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~-----------   68 (185)
                      |++++|.+.+..+..+..+++|+.|++++|.+++. +|..+..+++|++|++++|++++..+..+..+.           
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            46778888877666788888888888888888753 577888888888888888888765555554433           


Q ss_pred             ----------------CCcEEEecCCcCcCCCCCC-CcccccccccccCCCCCCCCC
Q 039243           69 ----------------SLAFFDVSHNHLRGAIPQG-TQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        69 ----------------~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  108 (185)
                                      +|+.|++++|.+++..+.. ..+.++..+.+.+|++.|+|+
T Consensus       185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence                            4555666666666444333 235566677777777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.39  E-value=5.6e-13  Score=111.86  Aligned_cols=99  Identities=24%  Similarity=0.287  Sum_probs=87.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++ +|. ++.+++|+.|+|++|.|+ .+|..++.+++|+.|+|++|+|++ +| .+..+++|+.|++++|.+
T Consensus       446 L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          446 LHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             EECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCC
T ss_pred             EEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCC
Confidence            5789999997 565 999999999999999999 889999999999999999999995 67 789999999999999999


Q ss_pred             cCCC-CCC-CcccccccccccCCCCC
Q 039243           81 RGAI-PQG-TQFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~-p~~-~~~~~l~~~~~~~n~~~  104 (185)
                      ++.. |.. ..+..+..+.+++|+..
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            9875 654 36788899999999753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=107.96  Aligned_cols=104  Identities=29%  Similarity=0.388  Sum_probs=62.6

Q ss_pred             EecCCcCCCCCch-hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            2 ILLDNNFVGEIPT-SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         2 ~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      ++++|.+++.+|. .+..+++|+.|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|+.+++++|.+
T Consensus       380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l  456 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL  456 (520)
T ss_dssp             ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC
Confidence            4445555443333 244445555555555555444444332  56777777777777 6666666777888888888887


Q ss_pred             cCCCCC-CCcccccccccccCCCCCCCCC
Q 039243           81 RGAIPQ-GTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~-~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      +...+. ...+..+..+.+.+|++.|+|+
T Consensus       457 ~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccCHHHhccCCcccEEECcCCCCcccCC
Confidence            743332 2345667777788888877653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.38  E-value=7e-13  Score=108.06  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=78.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++..|+.|.++++|+.|+|++|.|++..|..|.++++|++|++++|++++..+..|..+++|+.|++++|.+
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence            57888999988888899999999999999999988888899999999999999999866666788888999999999988


Q ss_pred             cCCCCCCC-cccccccccccC
Q 039243           81 RGAIPQGT-QFSTFANDWFAG  100 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~  100 (185)
                      ....+..+ .+.++..+.+.+
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          160 ESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCC
T ss_pred             ceeCHhHHhcCCcccEEeCCC
Confidence            75544322 334444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.38  E-value=8.9e-13  Score=110.78  Aligned_cols=103  Identities=22%  Similarity=0.104  Sum_probs=73.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus        37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence            46777777777777777777777777777777766677777777777777777777766677777777777777777777


Q ss_pred             cCCCCCC-CcccccccccccCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      .+..+.. ..+.+++.+.+.+|..
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~n~l  140 (606)
T 3vq2_A          117 ASLESFPIGQLITLKKLNVAHNFI  140 (606)
T ss_dssp             CCSSSSCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccCCCCCCCEEeCCCCcc
Confidence            6555333 2455566666666643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.38  E-value=8.7e-13  Score=109.53  Aligned_cols=102  Identities=18%  Similarity=0.166  Sum_probs=88.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence            57899999988889999999999999999999988889999999999999999999987777799999999999999999


Q ss_pred             cCC-CCC-CCcccccccccccCCC
Q 039243           81 RGA-IPQ-GTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~-~p~-~~~~~~l~~~~~~~n~  102 (185)
                      ++. .|. ...+..+..+.+.+|.
T Consensus       111 ~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          111 QTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             cccchhhhhhccCCccEEECCCCc
Confidence            853 333 3456677777777775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.37  E-value=8.5e-13  Score=108.04  Aligned_cols=101  Identities=22%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|++|++++|+++...+..|..+++|+.|++++|.+
T Consensus        37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i  116 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI  116 (477)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred             EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence            45667777766666677777777777777777766666677777777777777776644444556666666666666666


Q ss_pred             cCCCCCCC-cccccccccccCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n  101 (185)
                      .+..|..+ .+.++..+.+.+|
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n  138 (477)
T 2id5_A          117 VILLDYMFQDLYNLKSLEVGDN  138 (477)
T ss_dssp             CEECTTTTTTCTTCCEEEECCT
T ss_pred             ccCChhHccccccCCEEECCCC
Confidence            65544332 2344444444444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.37  E-value=1.9e-12  Score=109.87  Aligned_cols=101  Identities=17%  Similarity=0.260  Sum_probs=61.5

Q ss_pred             CEecCCcCCCCCchhcc--CCcccceeecccccccCCCcccccCCCCCCEEeC------CCCcCCCCCchHhhcCCCCcE
Q 039243            1 IILLDNNFVGEIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDL------SSNKLTGQIPQQLAELTSLAF   72 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l------~~N~l~~~~p~~~~~l~~L~~   72 (185)
                      |+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++      ++|++.+.+|..+..+++|+.
T Consensus       493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~  570 (636)
T 4eco_A          493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ  570 (636)
T ss_dssp             EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred             EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCE
Confidence            355666666 4555554  66666666666666664 5666666666666666      345556666666666666666


Q ss_pred             EEecCCcCcCCCCCCCcccccccccccCCCCCC
Q 039243           73 FDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLC  105 (185)
Q Consensus        73 l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c  105 (185)
                      |++++|.+ +.+|.... +.+..+++++|+..|
T Consensus       571 L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          571 LQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS  601 (636)
T ss_dssp             EECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred             EECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence            66666666 35554432 556666666666555

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=1.1e-12  Score=112.91  Aligned_cols=100  Identities=27%  Similarity=0.373  Sum_probs=79.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+
T Consensus       229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred             EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence            577888887 56666668888888888888888 78888888888888888888888 7788888888888888888888


Q ss_pred             cCCCCCC-CcccccccccccCCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~~  104 (185)
                      + .+|.. ..+.++..+.+++|+..
T Consensus       306 ~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          306 T-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             C-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             C-ccChhhhcCCCccEEeCCCCccC
Confidence            7 45543 35677778888888754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.37  E-value=1.2e-12  Score=103.28  Aligned_cols=102  Identities=21%  Similarity=0.191  Sum_probs=84.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|++++..++.|.++++|+.|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  136 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY  136 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence            57889999987777899999999999999999988888899999999999999999965555588899999999999999


Q ss_pred             cCCCC-C-CCcccccccccccCCC
Q 039243           81 RGAIP-Q-GTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p-~-~~~~~~l~~~~~~~n~  102 (185)
                      ++..+ . ...+.++..+.+.+|.
T Consensus       137 ~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          137 KTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             cccCchhhhccCCCCcEEECCCCc
Confidence            85443 1 2356777778887774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=6.9e-13  Score=104.43  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             CEecC-CcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLD-NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++ |.+.+..++.|.++++|+.|+|++|+|++..|..|..|++|+.|+|++|+|++..+..+..++ |+.|++.+|.
T Consensus        36 L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred             EEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCC
Confidence            57886 999998889999999999999999999999999999999999999999999966666666555 9999999999


Q ss_pred             CcCCCC
Q 039243           80 LRGAIP   85 (185)
Q Consensus        80 l~~~~p   85 (185)
                      +.+...
T Consensus       115 ~~c~c~  120 (347)
T 2ifg_A          115 LHCSCA  120 (347)
T ss_dssp             CCCCGG
T ss_pred             ccCCCc
Confidence            986543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.36  E-value=1.7e-12  Score=109.30  Aligned_cols=103  Identities=18%  Similarity=0.150  Sum_probs=77.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|..|..+++|+.|+|++|.+++..|..|+.+++|++|++++|.+++..+..|..+++|+.|++++|.+
T Consensus        80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            46778888877777788888888888888888877777778888888888888888855555567788888888888888


Q ss_pred             cCCCCCCC-cccccccccccCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~  103 (185)
                      .+..|..+ .+.++..+.+.+|..
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~l  183 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNRL  183 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCChhhhhcCCcCcEEECcCCCC
Confidence            77666543 456667777766643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=3.8e-13  Score=96.28  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=79.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|+++.. |......++|+.|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus        24 L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           24 LDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL  100 (176)
T ss_dssp             EECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             EEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence            57889999854 54333334999999999999965  6789999999999999999965556668999999999999999


Q ss_pred             cCCCCC---CCcccccccccccCCCCCC
Q 039243           81 RGAIPQ---GTQFSTFANDWFAGNPGLC  105 (185)
Q Consensus        81 ~~~~p~---~~~~~~l~~~~~~~n~~~c  105 (185)
                      .. +|.   ...++++..+.+.+|+...
T Consensus       101 ~~-~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A          101 VE-LGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             CC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             Cc-chhhHhhhcCCCCCEEEecCCCCCC
Confidence            74 443   3356778888899998643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=5.3e-13  Score=92.84  Aligned_cols=83  Identities=19%  Similarity=0.292  Sum_probs=73.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCC-CchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ-IPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.+++.  ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|+.+++++|.
T Consensus        47 L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           47 LSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             EECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             EECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            57899999876  7789999999999999999977899888899999999999999953 34788999999999999999


Q ss_pred             CcCCCC
Q 039243           80 LRGAIP   85 (185)
Q Consensus        80 l~~~~p   85 (185)
                      +++..+
T Consensus       125 l~~~~~  130 (149)
T 2je0_A          125 VTNLND  130 (149)
T ss_dssp             GGGSTT
T ss_pred             ccchHH
Confidence            986554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.35  E-value=1.5e-12  Score=109.38  Aligned_cols=103  Identities=15%  Similarity=0.050  Sum_probs=74.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|..|.++++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus        38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i  117 (606)
T 3t6q_A           38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI  117 (606)
T ss_dssp             EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred             EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence            46778888877777788888888888888888777777788888888888888887766677777777777777777777


Q ss_pred             cCCCCCC-CcccccccccccCCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      ++..|.. ..+.++..+.+.+|..
T Consensus       118 ~~l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A          118 SSIDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             SCGGGSCCTTCTTCCEEECCSSCC
T ss_pred             ccCCcchhccCCcccEEECCCCcc
Confidence            7543332 2445566666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.35  E-value=1.6e-12  Score=105.54  Aligned_cols=100  Identities=19%  Similarity=0.173  Sum_probs=73.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++.+..+..|.++++|+.|+|++|.+++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|.+
T Consensus        69 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             EECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             EEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence            46788888877778888888888888888888877778888888888888888888865556777888888888888887


Q ss_pred             cCCCCCCC-cccccccccccC
Q 039243           81 RGAIPQGT-QFSTFANDWFAG  100 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~  100 (185)
                      ....+..+ .+.++..+.+.+
T Consensus       149 ~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          149 ESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECCC
T ss_pred             cccCHHHhhhCcccCEeCCCC
Confidence            75444322 334444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.35  E-value=6.6e-13  Score=106.10  Aligned_cols=103  Identities=21%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|..|..+++|+.|+|++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          253 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             EECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcc
Confidence            467788888777788888888888888888887 45666677888888888888888 5677777888888888888888


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~  107 (185)
                      +.. + ...+..+..+.+.+|++.|.+
T Consensus       331 ~~~-~-~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          331 VTL-K-LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             cee-C-chhhccCCEEEcCCCCccchh
Confidence            754 3 334667788888888888854

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=1.1e-12  Score=108.15  Aligned_cols=103  Identities=22%  Similarity=0.154  Sum_probs=65.5

Q ss_pred             EecCCcCCCCCchhcc-CCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            2 ILLDNNFVGEIPTSIA-SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      +|++|.+++..|..+. .+++|+.|+|++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+
T Consensus       150 ~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC
T ss_pred             ECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC
Confidence            4555555554444443 455555555555555533 21 2246777777777777774 444577888888888888888


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~  107 (185)
                      ++..+....+..+..+.+.+|+..|++
T Consensus       227 ~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          227 VLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             CEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             cccchhhccCCCCCEEEcCCCCCcCcc
Confidence            864444445677788888888888753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.34  E-value=3.2e-12  Score=102.13  Aligned_cols=102  Identities=19%  Similarity=0.165  Sum_probs=71.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|++++|.++...+..|..+++|+.|++++|.+
T Consensus        74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A           74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence            46677777776666777777777788877777766677777777777888877777743334456777777788877777


Q ss_pred             cCCCCCCC-cccccccccccCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~  102 (185)
                      .+..|... .+.++..+.+.+|.
T Consensus       154 ~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          154 ERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CccChhhccCCCCCCEEECCCCc
Confidence            76655432 45566666666664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=6e-13  Score=99.60  Aligned_cols=103  Identities=18%  Similarity=0.258  Sum_probs=84.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeeccccc-ccCCCcccccCCCCCCEEeCCC-CcCCCCCchHhhcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNN-LRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      |++++|++++..+..|..+++|+.|++++|. ++...+..|..+++|++|++++ |++++..+..|..+++|+.|++++|
T Consensus        36 L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C           36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT  115 (239)
T ss_dssp             EEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE
T ss_pred             EEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC
Confidence            5788999998877789999999999999997 8867777889999999999998 9999666677888999999999999


Q ss_pred             cCcCCCCCCCcccccc---cccccCCCCC
Q 039243           79 HLRGAIPQGTQFSTFA---NDWFAGNPGL  104 (185)
Q Consensus        79 ~l~~~~p~~~~~~~l~---~~~~~~n~~~  104 (185)
                      .+++ +|....+..+.   .+.+.+|+.+
T Consensus       116 ~l~~-lp~~~~l~~L~~L~~L~l~~N~~l  143 (239)
T 2xwt_C          116 GLKM-FPDLTKVYSTDIFFILEITDNPYM  143 (239)
T ss_dssp             CCCS-CCCCTTCCBCCSEEEEEEESCTTC
T ss_pred             CCcc-ccccccccccccccEEECCCCcch
Confidence            9886 56544555665   7777777433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.34  E-value=1.7e-12  Score=100.38  Aligned_cols=101  Identities=22%  Similarity=0.298  Sum_probs=49.0

Q ss_pred             EecCCcCCCCCc-hhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCC-CCchHhhcCCCCcEEEecCCc
Q 039243            2 ILLDNNFVGEIP-TSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTG-QIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         2 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      ++++|.+++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            444555544333 344455555555555555554445555555555555555555543 244445555555555555555


Q ss_pred             CcCCCCCCC-cccccccccccCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNP  102 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~  102 (185)
                      +++..|... .+.++..+.+++|.
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSC
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCc
Confidence            554433322 23444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.33  E-value=2.7e-12  Score=106.62  Aligned_cols=104  Identities=24%  Similarity=0.397  Sum_probs=65.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccc------------------cCCCCCCEEeCCCCcCCCCCch
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTL------------------SNLTVIESLDLSSNKLTGQIPQ   62 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------------------~~l~~L~~L~l~~N~l~~~~p~   62 (185)
                      |++++|+++ .+|..+..+++|+.|++++|.++ .+|..+                  ..+++|++|++++|+++ .+|.
T Consensus       392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~  468 (549)
T 2z81_A          392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD  468 (549)
T ss_dssp             EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC
T ss_pred             EECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC
Confidence            355666665 34555555566666666666554 222211                  25667777777777777 5565


Q ss_pred             HhhcCCCCcEEEecCCcCcCCCCCC-CcccccccccccCCCCCCCCC
Q 039243           63 QLAELTSLAFFDVSHNHLRGAIPQG-TQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        63 ~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~  108 (185)
                       ...+++|+.|++++|++++..|.. ..+..+..+++++|++.|+|+
T Consensus       469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence             356777888888888887766653 356677777888888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=3.2e-12  Score=107.29  Aligned_cols=84  Identities=25%  Similarity=0.356  Sum_probs=77.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCC-chHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI-PQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++|.++ .+|..++.+++|+.|+|++|.|++ +| .+..+++|+.|++++|+|++.. |..+..+++|+.|++++|.
T Consensus       468 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          468 LDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             eecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            589999999 788999999999999999999995 67 8999999999999999999776 9999999999999999999


Q ss_pred             CcCCCCCC
Q 039243           80 LRGAIPQG   87 (185)
Q Consensus        80 l~~~~p~~   87 (185)
                      +++.+|..
T Consensus       545 l~~~~~~~  552 (567)
T 1dce_A          545 LCQEEGIQ  552 (567)
T ss_dssp             GGGSSSCT
T ss_pred             CCCCccHH
Confidence            99877654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=1.8e-12  Score=92.70  Aligned_cols=78  Identities=26%  Similarity=0.271  Sum_probs=44.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCch--HhhcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ--QLAELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~l~~L~~l~l~~N   78 (185)
                      |++++|.+++.  +.+..+++|+.|+|++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|+.+++++|
T Consensus        47 L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           47 IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             EECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSS
T ss_pred             EECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCC
Confidence            35556665543  34555666666666666666443344455666666666666665 3444  4555666666666666


Q ss_pred             cCc
Q 039243           79 HLR   81 (185)
Q Consensus        79 ~l~   81 (185)
                      .+.
T Consensus       124 ~i~  126 (176)
T 1a9n_A          124 PVT  126 (176)
T ss_dssp             GGG
T ss_pred             CCC
Confidence            655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.33  E-value=9.3e-13  Score=110.97  Aligned_cols=103  Identities=21%  Similarity=0.248  Sum_probs=86.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus       259 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          259 VDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             EECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCC
T ss_pred             EECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCC
Confidence            5788888888888888899999999999999984 5777778899999999999998 6788888899999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~  107 (185)
                      .+..  ...+..+..+.+.+|++.|.+
T Consensus       337 ~~~~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          337 VTLK--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCcC--hhhcCCCCEEEeeCCCCCChh
Confidence            8653  334678888999999998854

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.31  E-value=4.4e-13  Score=105.84  Aligned_cols=47  Identities=26%  Similarity=0.600  Sum_probs=32.2

Q ss_pred             chHhhcCCCCcEEEecCCcCcCCCCCC--CcccccccccccCCCCCCCCC
Q 039243           61 PQQLAELTSLAFFDVSHNHLRGAIPQG--TQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        61 p~~~~~l~~L~~l~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      |..+..+++|+.|++++|.++ .+|..  ..+.++..+.+.+|++.|.|+
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            344566777888888888877 34443  356677777888888887664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.31  E-value=1.9e-12  Score=106.97  Aligned_cols=99  Identities=23%  Similarity=0.209  Sum_probs=68.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|+.|..+++|++|+|++|.+++..|..|..+++|++|++++|+++ .+|..  .+++|++|++++|.+
T Consensus        26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l  102 (520)
T 2z7x_B           26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF  102 (520)
T ss_dssp             EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCC
T ss_pred             EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcc
Confidence            467777777777777777777777888877777666777777777777777777777 55554  677777777777777


Q ss_pred             cC-CCCCC-CcccccccccccCCC
Q 039243           81 RG-AIPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~-~~p~~-~~~~~l~~~~~~~n~  102 (185)
                      ++ .+|.. ..+.++..+.+++|.
T Consensus       103 ~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B          103 DALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             SSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             ccccchhhhccCCcceEEEecCcc
Confidence            65 24433 244555555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=4.5e-12  Score=92.25  Aligned_cols=98  Identities=21%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+. .+| .+..+++|+.|++++|.++ . +..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus        49 L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i  124 (197)
T 4ezg_A           49 ITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH  124 (197)
T ss_dssp             EEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred             EeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence            456677766 334 4666777777777777554 2 23566777777777777777765666677777777777777777


Q ss_pred             cCCCCCC-CcccccccccccCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~  102 (185)
                      ++..|.. ..+..+..+.+.+|.
T Consensus       125 ~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          125 DDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             BGGGHHHHTTCSSCCEEECCSCT
T ss_pred             CcHhHHHHhhCCCCCEEEccCCC
Confidence            6544332 245566666666665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.31  E-value=2.1e-12  Score=109.62  Aligned_cols=100  Identities=18%  Similarity=0.285  Sum_probs=60.7

Q ss_pred             CEecCCcCCCC-----------------Cchhcc--CCcccceeecccccccCCCcccccCCCCCCEEeCCCCc-CCC-C
Q 039243            1 IILLDNNFVGE-----------------IPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK-LTG-Q   59 (185)
Q Consensus         1 L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~-~   59 (185)
                      |+|++|.+++.                 +|+.++  ++++|++|+|++|.+.+.+|..+..+++|++|++++|+ +++ .
T Consensus       211 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~  290 (636)
T 4eco_A          211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ  290 (636)
T ss_dssp             EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred             EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc
Confidence            45666776664                 666666  67777777777777766777777777777777777776 665 5


Q ss_pred             CchHhhcC------CCCcEEEecCCcCcCCCCC---CCcccccccccccCC
Q 039243           60 IPQQLAEL------TSLAFFDVSHNHLRGAIPQ---GTQFSTFANDWFAGN  101 (185)
Q Consensus        60 ~p~~~~~l------~~L~~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n  101 (185)
                      +|..+..+      ++|+.|++++|.++ .+|.   ...+.++..+.+.+|
T Consensus       291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          291 LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred             chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence            66555554      55556666555555 4443   223334444444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.30  E-value=4.1e-12  Score=105.78  Aligned_cols=102  Identities=20%  Similarity=0.091  Sum_probs=74.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|++|++++|.+
T Consensus        33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  112 (570)
T 2z63_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (570)
T ss_dssp             EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence            46778888877777788888888888888888877777788888888888888888766667777777788888887777


Q ss_pred             cCCCCC-CCcccccccccccCCC
Q 039243           81 RGAIPQ-GTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~-~~~~~~l~~~~~~~n~  102 (185)
                      ++..+. ...+.++..+.+.+|.
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~n~  135 (570)
T 2z63_A          113 ASLENFPIGHLKTLKELNVAHNL  135 (570)
T ss_dssp             CCSTTCSCTTCTTCCEEECCSSC
T ss_pred             ccCCCccccccccccEEecCCCc
Confidence            754432 2345566666666664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.30  E-value=5e-12  Score=107.61  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=54.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  109 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI  109 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence            35566666655555566666666666666666655555555556666666666655533333455555555555555555


Q ss_pred             cCCCCCCC-cccccccccccCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n  101 (185)
                      .+..|..+ .+.++..+++.+|
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSS
T ss_pred             CccChhHccccCCCCEEECCCC
Confidence            54443322 3444444444444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.30  E-value=3.6e-12  Score=106.51  Aligned_cols=99  Identities=22%  Similarity=0.215  Sum_probs=70.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|++|++++|+++ .+|..  .+++|++|++++|.+
T Consensus        57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l  133 (562)
T 3a79_B           57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDF  133 (562)
T ss_dssp             EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCC
T ss_pred             EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCc
Confidence            467778887777777888888888888888888777777888888888888888877 56655  677777777777777


Q ss_pred             cCC-CCCC-CcccccccccccCCC
Q 039243           81 RGA-IPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~-~p~~-~~~~~l~~~~~~~n~  102 (185)
                      ++. .|.. ..+.++..+.+++|.
T Consensus       134 ~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          134 DVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             cccCchHhhcccCcccEEecCCCc
Confidence            753 2322 245566666666664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.30  E-value=3.4e-12  Score=99.47  Aligned_cols=99  Identities=20%  Similarity=0.113  Sum_probs=48.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCccccc-CCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLS-NLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.+++..+..+..+++|+.|+|++|.+++..+..+. .+++|++|++++|.+++. |.. ..+++|+.|++++|.
T Consensus       125 L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNK  202 (317)
T ss_dssp             EECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSC
T ss_pred             EECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCc
Confidence            35566666655555555566666666666666654444442 445555555555555422 221 124444555555554


Q ss_pred             CcCCCCCCCcccccccccccCC
Q 039243           80 LRGAIPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        80 l~~~~p~~~~~~~l~~~~~~~n  101 (185)
                      +++..+....+.++..+++++|
T Consensus       203 l~~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          203 LAFMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             CCEECGGGGGGTTCSEEECTTS
T ss_pred             CCcchhhhcccCcccEEECcCC
Confidence            4433333223344444444444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.30  E-value=2.9e-12  Score=111.91  Aligned_cols=84  Identities=25%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCC-cccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYI-PLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |||++|.+++..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+++..|+.|.++++|++|++++|.
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~  108 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG  108 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence            456666666655555555555555555555333233 4455555555555555555554445555555555555555555


Q ss_pred             CcCCC
Q 039243           80 LRGAI   84 (185)
Q Consensus        80 l~~~~   84 (185)
                      +.+..
T Consensus       109 l~~~~  113 (844)
T 3j0a_A          109 LSDAV  113 (844)
T ss_dssp             CSSCC
T ss_pred             CCccc
Confidence            55433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.29  E-value=7.1e-13  Score=103.10  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=16.0

Q ss_pred             CcccceeecccccccCCCcccc--cCCCCCCEEeCCCCcCC
Q 039243           19 LKGLQTLNLSNNNLRGYIPLTL--SNLTVIESLDLSSNKLT   57 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~l~~N~l~   57 (185)
                      +++|+.|+|++|.+++..|..+  ..+++|++|++++|+++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  134 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA  134 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc
Confidence            3444444444444443333332  33444444444444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=1.8e-11  Score=107.23  Aligned_cols=100  Identities=24%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             CEecCCcCCCCCchhc-cC-------CcccceeecccccccCCCccccc--CCCCCCEEeCCCCcCCCCCchHhhcCCCC
Q 039243            1 IILLDNNFVGEIPTSI-AS-------LKGLQTLNLSNNNLRGYIPLTLS--NLTVIESLDLSSNKLTGQIPQQLAELTSL   70 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~-~~-------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L   70 (185)
                      |+|++|.++ .+|..+ ..       +++|+.|+|++|+++ .+|..+.  .+++|+.|++++|++++ +|..+..+++|
T Consensus       702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L  778 (876)
T 4ecn_A          702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL  778 (876)
T ss_dssp             EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred             EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence            456677776 344332 21       226777777777777 5666665  67777777777777774 56666677777


Q ss_pred             cEEEecC------CcCcCCCCCCC-cccccccccccCCCC
Q 039243           71 AFFDVSH------NHLRGAIPQGT-QFSTFANDWFAGNPG  103 (185)
Q Consensus        71 ~~l~l~~------N~l~~~~p~~~-~~~~l~~~~~~~n~~  103 (185)
                      +.|++++      |.+.+.+|... .+..+..+.+++|..
T Consensus       779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            7777755      55666666543 455666666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.26  E-value=2.8e-12  Score=110.47  Aligned_cols=83  Identities=28%  Similarity=0.459  Sum_probs=77.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.++ .+|..|..+++|+.|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|..|..+++|+.|++++|.+
T Consensus       252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred             EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence            689999999 78999999999999999999999 88999999999999999999998 7888899999999999999999


Q ss_pred             cCCCCC
Q 039243           81 RGAIPQ   86 (185)
Q Consensus        81 ~~~~p~   86 (185)
                      ++.+|.
T Consensus       329 ~~~~p~  334 (727)
T 4b8c_D          329 EKQFLK  334 (727)
T ss_dssp             CSHHHH
T ss_pred             CCCChH
Confidence            876664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.26  E-value=9.6e-12  Score=97.35  Aligned_cols=99  Identities=24%  Similarity=0.307  Sum_probs=65.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+.+..|..|.++++|+.|++++|.+++..|..|..+++|++|++++|.++ .+|..+.  ++|++|++++|.+
T Consensus        59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i  135 (332)
T 2ft3_A           59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRI  135 (332)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCcc
Confidence            467777777776777778888888888888887777777777888888888777777 4554432  5666666666666


Q ss_pred             cCCCCCC-CcccccccccccCCC
Q 039243           81 RGAIPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~-~~~~~l~~~~~~~n~  102 (185)
                      .+..+.. ..+..+..+.+.+|.
T Consensus       136 ~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          136 RKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CCCCSGGGSSCSSCCEEECCSCC
T ss_pred             CccCHhHhCCCccCCEEECCCCc
Confidence            6433322 234445555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.25  E-value=8.8e-12  Score=96.92  Aligned_cols=101  Identities=20%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCC--Ccccc--cCCCCCCEEeCCCCcCCCC--Cc-hHhhcCCCCcEEE
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY--IPLTL--SNLTVIESLDLSSNKLTGQ--IP-QQLAELTSLAFFD   74 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~l~~N~l~~~--~p-~~~~~l~~L~~l~   74 (185)
                      +|++|.+.+..|+.|..+++|+.|+|++|++.+.  .|..+  ..+++|++|++++|++++.  ++ ..+..+++|+.|+
T Consensus       155 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~  234 (312)
T 1wwl_A          155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD  234 (312)
T ss_dssp             EEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred             EeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence            4455555544445555555555555555554432  12222  4455555555555555521  11 1223445555666


Q ss_pred             ecCCcCcCCCCC--CCcccccccccccCCC
Q 039243           75 VSHNHLRGAIPQ--GTQFSTFANDWFAGNP  102 (185)
Q Consensus        75 l~~N~l~~~~p~--~~~~~~l~~~~~~~n~  102 (185)
                      +++|.+++..|.  ...+..+..+.+++|.
T Consensus       235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             CTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             CCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            666655554431  1223445555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.24  E-value=5.2e-12  Score=110.57  Aligned_cols=101  Identities=20%  Similarity=0.271  Sum_probs=62.1

Q ss_pred             CEecCCcCCC-----------------CCchhcc--CCcccceeecccccccCCCcccccCCCCCCEEeCCCCc-CCC-C
Q 039243            1 IILLDNNFVG-----------------EIPTSIA--SLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK-LTG-Q   59 (185)
Q Consensus         1 L~L~~N~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~-~   59 (185)
                      |+|++|.+++                 .+|+.++  ++++|+.|+|++|.+.+.+|..|..+++|+.|++++|+ +++ .
T Consensus       453 L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~  532 (876)
T 4ecn_A          453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ  532 (876)
T ss_dssp             EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH
T ss_pred             EECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc
Confidence            4566777766                 2666655  67777777777777766777777777777777777776 665 5


Q ss_pred             CchHhhcCC-------CCcEEEecCCcCcCCCCC---CCcccccccccccCCC
Q 039243           60 IPQQLAELT-------SLAFFDVSHNHLRGAIPQ---GTQFSTFANDWFAGNP  102 (185)
Q Consensus        60 ~p~~~~~l~-------~L~~l~l~~N~l~~~~p~---~~~~~~l~~~~~~~n~  102 (185)
                      +|..+..++       +|+.|++++|.++ .+|.   ...+.++..+.+.+|.
T Consensus       533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC
Confidence            665555444       5666666666665 4444   2234444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.23  E-value=3.6e-12  Score=105.07  Aligned_cols=102  Identities=19%  Similarity=0.086  Sum_probs=66.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCccccc-CCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLS-NLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++. |. ...+++|+.|++++|.
T Consensus       125 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             EECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSC
T ss_pred             EECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCC
Confidence            35666666666666666677777777777777766666664 567777777777777643 32 2246677777777777


Q ss_pred             CcCCCCCCCcccccccccccCCCCC
Q 039243           80 LRGAIPQGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        80 l~~~~p~~~~~~~l~~~~~~~n~~~  104 (185)
                      +++..|....+..+..+++++|...
T Consensus       203 l~~~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          203 LAFMGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             CCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCCCCHhHcCCCCccEEEecCCcCc
Confidence            7766555445566777777776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.22  E-value=1e-11  Score=96.36  Aligned_cols=100  Identities=22%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             CEecCCcCCCC--Cc--hhccCCcccceeecccccccCCCcc----cccCCCCCCEEeCCCCcCCCCCchHhhcC---CC
Q 039243            1 IILLDNNFVGE--IP--TSIASLKGLQTLNLSNNNLRGYIPL----TLSNLTVIESLDLSSNKLTGQIPQQLAEL---TS   69 (185)
Q Consensus         1 L~L~~N~l~~~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~l~~N~l~~~~p~~~~~l---~~   69 (185)
                      |+|++|.+.+.  ++  ..+..+++|++|+|++|.++ .++.    .+..+++|++|++++|++++..|..+..+   ++
T Consensus       174 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  252 (310)
T 4glp_A          174 LDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSA  252 (310)
T ss_dssp             EECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTT
T ss_pred             EECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCc
Confidence            46777776642  21  22356777888888888776 3333    24667778888888888876666666555   57


Q ss_pred             CcEEEecCCcCcCCCCCCCcccccccccccCCCC
Q 039243           70 LAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        70 L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~  103 (185)
                      |+.|++++|.++ .+|.... .++..+++++|..
T Consensus       253 L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l  284 (310)
T 4glp_A          253 LNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRL  284 (310)
T ss_dssp             CCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCC
T ss_pred             CCEEECCCCCCC-chhhhhc-CCCCEEECCCCcC
Confidence            788888888777 4555432 5677777777754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.22  E-value=1.3e-11  Score=95.84  Aligned_cols=82  Identities=21%  Similarity=0.176  Sum_probs=61.4

Q ss_pred             CEecCCcCCCCCchhc--cCCcccceeecccccccCCCc----ccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEE
Q 039243            1 IILLDNNFVGEIPTSI--ASLKGLQTLNLSNNNLRGYIP----LTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD   74 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~   74 (185)
                      |++++|.+.+..|..+  ..+++|+.|+|++|.+++..+    ..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  175 (310)
T 4glp_A           96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD  175 (310)
T ss_dssp             EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred             EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence            4677888888877777  778888888888888876544    3445677888888888888766667777778888888


Q ss_pred             ecCCcCcC
Q 039243           75 VSHNHLRG   82 (185)
Q Consensus        75 l~~N~l~~   82 (185)
                      +++|++.+
T Consensus       176 Ls~N~l~~  183 (310)
T 4glp_A          176 LSDNPGLG  183 (310)
T ss_dssp             CCSCTTCH
T ss_pred             CCCCCCcc
Confidence            88887643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.20  E-value=4e-11  Score=94.09  Aligned_cols=98  Identities=19%  Similarity=0.288  Sum_probs=56.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+
T Consensus       226 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC
T ss_pred             EEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcC
Confidence            3566666665433  56666666666666666632  345666666666666666663 2 2355666666666666666


Q ss_pred             cCCCCCCC-cccccccccccCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~  104 (185)
                      .+..|... .++.+..+.+.+|+..
T Consensus       300 ~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          300 GNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CCcChhHhhccccCCEEEccCCccc
Confidence            54444322 3455555666666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.18  E-value=6.9e-11  Score=92.29  Aligned_cols=79  Identities=25%  Similarity=0.316  Sum_probs=36.6

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++++|.+++..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.++
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            34444444444444444444444444444444444444444444444444444444 34444444444444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.18  E-value=1.5e-11  Score=91.98  Aligned_cols=101  Identities=16%  Similarity=0.147  Sum_probs=71.3

Q ss_pred             CEecCCc-CCCCCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCc---EEEe
Q 039243            1 IILLDNN-FVGEIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA---FFDV   75 (185)
Q Consensus         1 L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~---~l~l   75 (185)
                      |++++|. +++..+..|.++++|+.|++++ |.+++..+..|..+++|++|++++|++++ +|. +..+++|+   .+++
T Consensus        60 L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l  137 (239)
T 2xwt_C           60 IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEI  137 (239)
T ss_dssp             EEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEE
T ss_pred             EeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEEC
Confidence            4677786 7766666788888888888887 88886666777888888888888888874 565 66667776   7777


Q ss_pred             cCC-cCcCCCCCCC-cccccc-cccccCCCC
Q 039243           76 SHN-HLRGAIPQGT-QFSTFA-NDWFAGNPG  103 (185)
Q Consensus        76 ~~N-~l~~~~p~~~-~~~~l~-~~~~~~n~~  103 (185)
                      ++| .+++..+..+ .+..+. .+.+.+|..
T Consensus       138 ~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             ESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             CCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            777 7765544432 355566 666666643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.15  E-value=1.8e-11  Score=95.39  Aligned_cols=102  Identities=22%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             CEecCCcCCCCCchhc-cCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++|.+++..+..+ ..+++|+.|+|++|.+++. +. ...+++|++|++++|+++ .+|..+..+++|+.|++++|.
T Consensus       149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred             EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCc
Confidence            3556666665555544 2456666666666666533 22 223566666666666666 334445566666666666666


Q ss_pred             CcCCCCCCCcccccccccccCCCCCC
Q 039243           80 LRGAIPQGTQFSTFANDWFAGNPGLC  105 (185)
Q Consensus        80 l~~~~p~~~~~~~l~~~~~~~n~~~c  105 (185)
                      +++..+....+..+..+.+.+|+..|
T Consensus       226 l~~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          226 LVLIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CCEECTTCCCCTTCCEEECTTCCCBH
T ss_pred             ccchhhHhhcCCCCCEEEccCCCccC
Confidence            65332222244555566666666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.14  E-value=6.5e-11  Score=91.26  Aligned_cols=95  Identities=27%  Similarity=0.421  Sum_probs=58.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++ +| .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+
T Consensus        95 L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A           95 LFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             EECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             EECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence            4566777665 22 366677777777777777643  3466666777777777776643  4566666677777776666


Q ss_pred             cCCCCCCCcccccccccccCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      ++..| ...+..+..+.+++|.
T Consensus       169 ~~~~~-l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          169 SDIVP-LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CCCGG-GTTCTTCCEEECCSSC
T ss_pred             ccchh-hcCCCccCEEECCCCc
Confidence            65443 3344555555555553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.14  E-value=5.8e-11  Score=92.24  Aligned_cols=95  Identities=21%  Similarity=0.348  Sum_probs=53.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++. +. +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+
T Consensus       112 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence            45666666653 22 6666666666666666664332  5566666666666666663 333 55566666666666666


Q ss_pred             cCCCCCCCcccccccccccCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      ++..+ ...+..+..+.+++|.
T Consensus       186 ~~~~~-l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          186 SDISP-LASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             CCCGG-GGGCTTCCEEECTTSC
T ss_pred             CcChh-hcCCCCCCEEEccCCc
Confidence            53322 2334444555555553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.13  E-value=1.6e-10  Score=89.00  Aligned_cols=96  Identities=23%  Similarity=0.341  Sum_probs=62.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..+  +..+++|+.|++++|.+++ +| .+..+++|++|++++|++++ + ..+..+++|+.|++++|.+
T Consensus        73 L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A           73 LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCC
T ss_pred             EEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcC
Confidence            4566676665443  6667777777777777763 33 36677777777777777774 3 3466777777777777777


Q ss_pred             cCCCCCCCcccccccccccCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~  103 (185)
                      ++. +....+.++..+.+++|..
T Consensus       147 ~~~-~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          147 TDI-TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             CCC-GGGGGCTTCSEEECCSSCC
T ss_pred             Ccc-hhhccCCCCCEEEccCCcc
Confidence            644 4334556666677766643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.12  E-value=1.9e-10  Score=87.48  Aligned_cols=93  Identities=23%  Similarity=0.278  Sum_probs=42.2

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+++..+  +..+++|+.|+|++|.+++ +|....  ++|+.|++++|++++ ++ .+..+++|+.|++++|.++
T Consensus        69 ~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           69 HLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             ECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC
Confidence            455555554433  5555556665555555553 222111  344444444444442 22 2444555555555555554


Q ss_pred             CCCCCCCcccccccccccCCC
Q 039243           82 GAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        82 ~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      +. +....+..+..+.+++|.
T Consensus       142 ~~-~~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          142 SI-VMLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             BC-GGGGGCTTCCEEECTTSC
T ss_pred             CC-hHHccCCCCCEEECCCCc
Confidence            32 222233444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.11  E-value=1.7e-10  Score=89.52  Aligned_cols=96  Identities=23%  Similarity=0.341  Sum_probs=66.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+.+. + .+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|+.|++++|.+
T Consensus        90 L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l  163 (308)
T 1h6u_A           90 LELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQV  163 (308)
T ss_dssp             EECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred             EEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcC
Confidence            46777777753 3 57778888888888888874 333 77788888888888888743 33 67777888888888887


Q ss_pred             cCCCCCCCcccccccccccCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~  103 (185)
                      ++..+ ...+.++..+.+.+|..
T Consensus       164 ~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          164 SDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCChh-hcCCCCCCEEECCCCcc
Confidence            75433 44556666777776643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.10  E-value=2e-10  Score=87.33  Aligned_cols=98  Identities=26%  Similarity=0.270  Sum_probs=80.8

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++. |. +.. ++|+.|+|++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+
T Consensus        90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence            57899999874 33 333 899999999999995 44 58999999999999999995 45 688999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCG  106 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~  106 (185)
                      ++. +....+..+..+.+.+|+..+.
T Consensus       163 ~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch-HHhccCCCCCEEeCCCCcccCC
Confidence            976 5555677888889999987654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.09  E-value=1.6e-10  Score=97.59  Aligned_cols=94  Identities=26%  Similarity=0.331  Sum_probs=48.2

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+.+.  +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|++++|.++
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            4444444432  2344455555555555555533  345555555555555555554333  555556666666666555


Q ss_pred             CCCCCCCcccccccccccCCC
Q 039243           82 GAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        82 ~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      +. |....+..+..+.+.+|+
T Consensus       189 ~l-~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          189 DL-RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             BC-GGGTTCTTCSEEECCSEE
T ss_pred             CC-hHHccCCCCCEEEccCCc
Confidence            32 333344555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.04  E-value=2.7e-10  Score=93.06  Aligned_cols=94  Identities=24%  Similarity=0.287  Sum_probs=46.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++|+.|++++|.+
T Consensus       270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred             EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence            3455666654433  5555666666666666554333  4555555555555555554333  34455555555555555


Q ss_pred             cCCCCCCCcccccccccccCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n  101 (185)
                      ++. +....+..+..+.+.+|
T Consensus       344 ~~~-~~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          344 SDV-SSLANLTNINWLSAGHN  363 (466)
T ss_dssp             CCC-GGGTTCTTCCEEECCSS
T ss_pred             CCc-hhhccCCCCCEEeCCCC
Confidence            432 22223334444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.03  E-value=2e-10  Score=90.68  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCc-ccccCCCCCCE-EeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIES-LDLSSNKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      |+|++|+|+...+++|.++++|+.|+|++|++.+.+| ..|.+++++.. +.+++|+++...|+.|..+++|+.+++++|
T Consensus        35 L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           35 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  114 (350)
T ss_dssp             EEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred             EEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence            5788999987767788999999999999999865555 56788888765 566778898777788889999999999999


Q ss_pred             cCcCCCC
Q 039243           79 HLRGAIP   85 (185)
Q Consensus        79 ~l~~~~p   85 (185)
                      .+....+
T Consensus       115 ~l~~~~~  121 (350)
T 4ay9_X          115 GIKHLPD  121 (350)
T ss_dssp             CCSSCCC
T ss_pred             ccccCCc
Confidence            9885544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.03  E-value=7e-10  Score=93.73  Aligned_cols=94  Identities=29%  Similarity=0.419  Sum_probs=50.5

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+.+.  +.+..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+++.  ..+..+++|+.|++++|.+.
T Consensus        93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A           93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             ECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            3444444431  134455555555555555553 2 2355555666666666666533  34556666666666666666


Q ss_pred             CCCCCCCcccccccccccCCC
Q 039243           82 GAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        82 ~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      +..| ...+..+..+.+++|.
T Consensus       167 ~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          167 DIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CCGG-GTTCTTCCEEECCSSC
T ss_pred             Cchh-hccCCCCCEEECcCCC
Confidence            5444 3345556666666664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.02  E-value=7.9e-10  Score=90.32  Aligned_cols=97  Identities=24%  Similarity=0.437  Sum_probs=65.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|++++|.+
T Consensus       248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          248 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred             EECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence            3566666665544  6667777777777777774433  6677777777777777775433  66777888888888887


Q ss_pred             cCCCCCCCcccccccccccCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~  104 (185)
                      .+..| ...+..+..+.+.+|...
T Consensus       322 ~~~~~-~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          322 SDISP-VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             SCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             CCchh-hccCccCCEeECCCCccC
Confidence            76555 345666777777777543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=2.2e-12  Score=94.04  Aligned_cols=98  Identities=22%  Similarity=0.277  Sum_probs=76.3

Q ss_pred             EecCCcCCCCCch------hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEe
Q 039243            2 ILLDNNFVGEIPT------SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDV   75 (185)
Q Consensus         2 ~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l   75 (185)
                      +++.+.+++..|.      .+..+++|+.|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEEC
Confidence            4667777777766      78888999999999999985 66 7888899999999999998 67887777788899999


Q ss_pred             cCCcCcCCCCCCCcccccccccccCCCC
Q 039243           76 SHNHLRGAIPQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        76 ~~N~l~~~~p~~~~~~~l~~~~~~~n~~  103 (185)
                      ++|.+++ +|....+..+..+.+.+|..
T Consensus       101 ~~N~l~~-l~~~~~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A          101 SYNQIAS-LSGIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             EEEECCC-HHHHHHHHHSSEEEESEEEC
T ss_pred             cCCcCCc-CCccccCCCCCEEECCCCcC
Confidence            9988885 34333455666777777643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.00  E-value=1.9e-12  Score=94.27  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=82.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|+.|++++|.+
T Consensus        53 L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           53 LALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             EECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEEC
T ss_pred             EECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcC
Confidence            5788999887 56 7888999999999999999 778888888999999999999995 55 688889999999999999


Q ss_pred             cCCCC--CCCcccccccccccCCCCCCC
Q 039243           81 RGAIP--QGTQFSTFANDWFAGNPGLCG  106 (185)
Q Consensus        81 ~~~~p--~~~~~~~l~~~~~~~n~~~c~  106 (185)
                      ++..+  ....+.++..+.+.+|+..+.
T Consensus       128 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          128 TNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             CCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CchhHHHHHhcCCCCCEEEecCCccccc
Confidence            85332  233567788888888876554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.95  E-value=2.3e-09  Score=87.63  Aligned_cols=91  Identities=26%  Similarity=0.268  Sum_probs=54.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++. | .+..+++|+.|+|++|.+++. |  +..+++|++|++++|.+++. |  +..+++|++|++++|.+
T Consensus        47 L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l  118 (457)
T 3bz5_A           47 LDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL  118 (457)
T ss_dssp             EECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred             EEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence            45667777654 3 466677777777777777643 3  66666677777777666643 3  55666666666666666


Q ss_pred             cCCCCCCCcccccccccccCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n  101 (185)
                      ++. | ...+.++..+.+.+|
T Consensus       119 ~~l-~-~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          119 TKL-D-VSQNPLLTYLNCARN  137 (457)
T ss_dssp             SCC-C-CTTCTTCCEEECTTS
T ss_pred             Cee-c-CCCCCcCCEEECCCC
Confidence            642 3 223444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.94  E-value=9.1e-10  Score=92.39  Aligned_cols=68  Identities=34%  Similarity=0.393  Sum_probs=28.9

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +|++|.+++ +|.   .+++|+.|+|++|.|++ +|.   .+++|+.|++++|+|++ +|. +.  ++|+.|++++|.++
T Consensus       126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             ECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            444444444 232   33444444444444442 332   23444444444444442 333 22  34444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.93  E-value=3.4e-09  Score=83.04  Aligned_cols=93  Identities=24%  Similarity=0.342  Sum_probs=47.9

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++++|.+... | .+..+++|++|++++|.++.. +. +..+++|++|++++|.++. +| .+..+++|+++++++|.+.
T Consensus        50 ~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~  123 (347)
T 4fmz_A           50 VVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNIS  123 (347)
T ss_dssp             ECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCC
T ss_pred             EEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCccc
Confidence            4455555432 2 255556666666666666532 22 5556666666666666652 32 3555556666666666555


Q ss_pred             CCCCCCCcccccccccccCC
Q 039243           82 GAIPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        82 ~~~p~~~~~~~l~~~~~~~n  101 (185)
                      +..+ ...+..+..+.+.+|
T Consensus       124 ~~~~-~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A          124 DISP-LANLTKMYSLNLGAN  142 (347)
T ss_dssp             CCGG-GTTCTTCCEEECTTC
T ss_pred             Cchh-hccCCceeEEECCCC
Confidence            3222 233444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.93  E-value=3.2e-10  Score=89.77  Aligned_cols=83  Identities=23%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCc----ccccCCC-CCCEEeCCCCcCCCCCchHhhcC-----CCCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP----LTLSNLT-VIESLDLSSNKLTGQIPQQLAEL-----TSLA   71 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~l~~N~l~~~~p~~~~~l-----~~L~   71 (185)
                      +++.|++++.+|..+...++|+.|+|++|.++...+    ..+..++ +|++|++++|.+++..+..+..+     ++|+
T Consensus         4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            455666666666655555556666666666665444    4555555 56666666666665555555543     5666


Q ss_pred             EEEecCCcCcCCC
Q 039243           72 FFDVSHNHLRGAI   84 (185)
Q Consensus        72 ~l~l~~N~l~~~~   84 (185)
                      .|++++|.+++..
T Consensus        84 ~L~Ls~n~l~~~~   96 (362)
T 3goz_A           84 SLNLSGNFLSYKS   96 (362)
T ss_dssp             EEECCSSCGGGSC
T ss_pred             EEECcCCcCChHH
Confidence            6666666665433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.92  E-value=3.1e-09  Score=89.14  Aligned_cols=53  Identities=25%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCcccccccccccCCC
Q 039243           43 LTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        43 l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      +++|+.|++++|.|++ +|.   .+++|+.|++++|.+++ +|. +. .++..+.+++|.
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~  191 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNL  191 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSC
T ss_pred             CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCC
Confidence            3444444444444442 333   23445555555555543 333 22 444455555553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.88  E-value=2.9e-10  Score=90.01  Aligned_cols=103  Identities=21%  Similarity=0.217  Sum_probs=74.2

Q ss_pred             CEecCCcCCCCCc----hhccCCc-ccceeecccccccCCCcccccCC-----CCCCEEeCCCCcCCCCCchHhhc----
Q 039243            1 IILLDNNFVGEIP----TSIASLK-GLQTLNLSNNNLRGYIPLTLSNL-----TVIESLDLSSNKLTGQIPQQLAE----   66 (185)
Q Consensus         1 L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~l~~N~l~~~~p~~~~~----   66 (185)
                      |+|++|.+++..+    +.|..++ +|+.|+|++|.+++..+..+..+     ++|++|++++|.+++..+..+..    
T Consensus        27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~  106 (362)
T 3goz_A           27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAA  106 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHh
Confidence            5788888887776    6777787 89999999998887777777665     88888999988888666665444    


Q ss_pred             C-CCCcEEEecCCcCcCCCCCCC-----c-ccccccccccCCCC
Q 039243           67 L-TSLAFFDVSHNHLRGAIPQGT-----Q-FSTFANDWFAGNPG  103 (185)
Q Consensus        67 l-~~L~~l~l~~N~l~~~~p~~~-----~-~~~l~~~~~~~n~~  103 (185)
                      + ++|+.|++++|.+++..+...     . ...+..+.+++|..
T Consensus       107 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A          107 IPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             CCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence            3 788888888888875443221     1 13566666666643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.87  E-value=8.3e-09  Score=84.34  Aligned_cols=90  Identities=20%  Similarity=0.236  Sum_probs=66.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++. |  ++.+++|+.|++++|.+++. +  ++.+++|++|++++|++++ +|  +..+++|+.|++++|.+
T Consensus        69 L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l  139 (457)
T 3bz5_A           69 LICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTL  139 (457)
T ss_dssp             EECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCC
T ss_pred             EEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcc
Confidence            57888888875 3  77888888888888888854 3  7788888888888888885 44  67788888888888888


Q ss_pred             cCCCCCCCcccccccccccCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n  101 (185)
                      ++. + ...+..+..+.+.+|
T Consensus       140 ~~l-~-l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          140 TEI-D-VSHNTQLTELDCHLN  158 (457)
T ss_dssp             SCC-C-CTTCTTCCEEECTTC
T ss_pred             cee-c-cccCCcCCEEECCCC
Confidence            764 3 334455555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.81  E-value=2.6e-10  Score=89.00  Aligned_cols=77  Identities=19%  Similarity=0.159  Sum_probs=34.7

Q ss_pred             EecCCcCCCC-CchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCC-cCCCC-CchHhhcCCCCcEEEecCC
Q 039243            2 ILLDNNFVGE-IPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSN-KLTGQ-IPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         2 ~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N-~l~~~-~p~~~~~l~~L~~l~l~~N   78 (185)
                      +|++|.+++. +|..+..+++|+.|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+.|++++|
T Consensus        99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B           99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            3444444333 3444444444555555544444444444444445555555544 34321 3333444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.80  E-value=4.8e-10  Score=89.35  Aligned_cols=105  Identities=14%  Similarity=0.212  Sum_probs=65.5

Q ss_pred             CEecCCcCC--C---CCchhccCCcccceeeccccccc----CCCcccccCCCCCCEEeCCCCcCCCC----CchHhhc-
Q 039243            1 IILLDNNFV--G---EIPTSIASLKGLQTLNLSNNNLR----GYIPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAE-   66 (185)
Q Consensus         1 L~L~~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~-   66 (185)
                      |+|++|.+.  +   ..|..+..+++|+.|+|++|.++    +.+|..+..+++|+.|++++|.+++.    +|..+.. 
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            355666665  2   23335666677777777777774    45666677777777777777777644    3444533 


Q ss_pred             -CCCCcEEEecCCcCcC----CCCCCC--cccccccccccCCCCCC
Q 039243           67 -LTSLAFFDVSHNHLRG----AIPQGT--QFSTFANDWFAGNPGLC  105 (185)
Q Consensus        67 -l~~L~~l~l~~N~l~~----~~p~~~--~~~~l~~~~~~~n~~~c  105 (185)
                       +++|+.|++++|.+++    .+|...  .++++..+.+.+|+...
T Consensus       272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence             6777777777777765    244332  24666777777776554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.79  E-value=1.5e-08  Score=82.69  Aligned_cols=74  Identities=22%  Similarity=0.375  Sum_probs=42.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++ +| .|+.+++|++|++++|++++ +|..+   .+|++|++++|++++ +| .+..+++|+.+++++|.+
T Consensus       136 L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          136 LGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred             EECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC
Confidence            3556666664 44 36666666666666666663 44322   356666666666653 44 355566666666666665


Q ss_pred             cC
Q 039243           81 RG   82 (185)
Q Consensus        81 ~~   82 (185)
                      ++
T Consensus       208 ~~  209 (454)
T 1jl5_A          208 KK  209 (454)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.79  E-value=1.4e-09  Score=88.92  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCC-------------CEEeCCCCcCCCCCchHhhcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVI-------------ESLDLSSNKLTGQIPQQLAEL   67 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~l~~N~l~~~~p~~~~~l   67 (185)
                      |++++|++ +.+|++++++++|++|++++|.++|.+|..++.+.+|             ++|++++|.+++ +|..   .
T Consensus        16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~   90 (454)
T 1jl5_A           16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---P   90 (454)
T ss_dssp             -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---C
T ss_pred             hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---c
Confidence            46788998 7899999999999999999999999999988887654             777777777774 3431   2


Q ss_pred             CCCcEEEecCCcCcC
Q 039243           68 TSLAFFDVSHNHLRG   82 (185)
Q Consensus        68 ~~L~~l~l~~N~l~~   82 (185)
                      ++|+.+++++|.+++
T Consensus        91 ~~L~~L~l~~n~l~~  105 (454)
T 1jl5_A           91 PHLESLVASCNSLTE  105 (454)
T ss_dssp             TTCSEEECCSSCCSS
T ss_pred             CCCCEEEccCCcCCc
Confidence            456666666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.78  E-value=4.8e-09  Score=82.69  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=77.3

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCc-hHhhcCCCCcE-EEecCCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP-QQLAELTSLAF-FDVSHNH   79 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~~~~~l~~L~~-l~l~~N~   79 (185)
                      +.++++++ .+|..+  .++++.|+|++|+|+...++.|.++++|++|+|++|++.+.+| +.|.+++++.. +.++.|+
T Consensus        15 ~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           15 LCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            45678888 567655  3689999999999996666789999999999999999876665 46788888765 6677899


Q ss_pred             CcCCCCCCC-cccccccccccCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPG  103 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~  103 (185)
                      +....|..+ .+.++..+.+.+|..
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGI  116 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECC
T ss_pred             ccccCchhhhhcccccccccccccc
Confidence            997777654 466777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.78  E-value=6.6e-10  Score=86.64  Aligned_cols=100  Identities=16%  Similarity=0.094  Sum_probs=77.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCC-CcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC-
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN-   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N-   78 (185)
                      |++++|.+.+..+. +..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|+.|++++| 
T Consensus        75 L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B           75 FRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             EECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             EEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence            46778888877665 55789999999999999865 7888899999999999999998888888999999999999999 


Q ss_pred             cCcCC-CCC-CCcccccccccccCC
Q 039243           79 HLRGA-IPQ-GTQFSTFANDWFAGN  101 (185)
Q Consensus        79 ~l~~~-~p~-~~~~~~l~~~~~~~n  101 (185)
                      .+++. ++. ...++++..+.+.+|
T Consensus       154 ~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          154 GFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            56531 222 113445555555555

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.73  E-value=2e-08  Score=85.06  Aligned_cols=76  Identities=29%  Similarity=0.416  Sum_probs=42.5

Q ss_pred             cccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC-Ccccccccccc
Q 039243           20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG-TQFSTFANDWF   98 (185)
Q Consensus        20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~l~~~~~   98 (185)
                      ++|+.|+|++|.|++ +|   ..+++|+.|++++|.|+ .+|.   .+++|+.|++++|.++ .+|.. ..++++..+.+
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            445555666666553 33   23455666666666666 3444   3456666666666666 33432 24555666666


Q ss_pred             cCCCCC
Q 039243           99 AGNPGL  104 (185)
Q Consensus        99 ~~n~~~  104 (185)
                      .+|+..
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            666643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.73  E-value=1.2e-08  Score=86.40  Aligned_cols=77  Identities=27%  Similarity=0.386  Sum_probs=66.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++++ +|   ..+++|+.|+|++|.|+ .+|.   .+++|+.|++++|+|+ .+|..+..+++|+.|++++|++
T Consensus       226 L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          226 LIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             EECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred             EEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence            4678888886 44   45689999999999999 5665   6789999999999999 7899999999999999999999


Q ss_pred             cCCCCC
Q 039243           81 RGAIPQ   86 (185)
Q Consensus        81 ~~~~p~   86 (185)
                      ++..|.
T Consensus       297 ~~~~~~  302 (622)
T 3g06_A          297 SERTLQ  302 (622)
T ss_dssp             CHHHHH
T ss_pred             CCcCHH
Confidence            877664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.70  E-value=2.2e-09  Score=85.52  Aligned_cols=85  Identities=19%  Similarity=0.299  Sum_probs=72.6

Q ss_pred             CEecCCcCC----CCCchhccCCcccceeecccccccCC----Cccccc--CCCCCCEEeCCCCcCCC----CCchHh-h
Q 039243            1 IILLDNNFV----GEIPTSIASLKGLQTLNLSNNNLRGY----IPLTLS--NLTVIESLDLSSNKLTG----QIPQQL-A   65 (185)
Q Consensus         1 L~L~~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~l~~N~l~~----~~p~~~-~   65 (185)
                      |+|++|.++    +.+|..+..+++|+.|+|++|.+++.    ++..+.  .+++|+.|++++|.++.    .+|..+ .
T Consensus       221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~  300 (386)
T 2ca6_A          221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE  300 (386)
T ss_dssp             EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH
T ss_pred             EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh
Confidence            578999986    67888899999999999999999865    566663  48999999999999996    378877 6


Q ss_pred             cCCCCcEEEecCCcCcCCCC
Q 039243           66 ELTSLAFFDVSHNHLRGAIP   85 (185)
Q Consensus        66 ~l~~L~~l~l~~N~l~~~~p   85 (185)
                      ++++|+.|++++|.+++..+
T Consensus       301 ~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          301 KMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HCTTCCEEECTTSBSCTTSH
T ss_pred             cCCCceEEEccCCcCCcchh
Confidence            68999999999999986654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.69  E-value=4.4e-09  Score=80.12  Aligned_cols=67  Identities=25%  Similarity=0.337  Sum_probs=42.7

Q ss_pred             cCCcccceeecccccccC--CCcccccCCCCCCEEeCCCCcCCCCCchHhhcCC--CCcEEEecCCcCcCCCC
Q 039243           17 ASLKGLQTLNLSNNNLRG--YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELT--SLAFFDVSHNHLRGAIP   85 (185)
Q Consensus        17 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~p   85 (185)
                      .++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|++++|++.+..|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            346677777777777775  3345556677777777777777743  2233333  67777777777765554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.60  E-value=2.9e-08  Score=75.63  Aligned_cols=73  Identities=23%  Similarity=0.312  Sum_probs=59.0

Q ss_pred             CEecCCcCCC--CCchhccCCcccceeecccccccCCCcccccCCC--CCCEEeCCCCcCCCCCch-------HhhcCCC
Q 039243            1 IILLDNNFVG--EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLT--VIESLDLSSNKLTGQIPQ-------QLAELTS   69 (185)
Q Consensus         1 L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~l~~N~l~~~~p~-------~~~~l~~   69 (185)
                      |+|++|.+++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++.+|+       .+..+++
T Consensus       175 L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~  252 (267)
T 3rw6_A          175 LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPK  252 (267)
T ss_dssp             EECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTT
T ss_pred             EECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcc
Confidence            6899999998  4557778899999999999999965  3344444  999999999999976662       4678899


Q ss_pred             CcEEEe
Q 039243           70 LAFFDV   75 (185)
Q Consensus        70 L~~l~l   75 (185)
                      |+.||-
T Consensus       253 L~~LDg  258 (267)
T 3rw6_A          253 LLRLDG  258 (267)
T ss_dssp             CCEESS
T ss_pred             cCeECC
Confidence            998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.50  E-value=1.2e-07  Score=74.07  Aligned_cols=78  Identities=17%  Similarity=0.135  Sum_probs=42.2

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCC-EEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIE-SLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      +|++|+++...+.+|.++.+|+.++|++| ++...+..|.++.+|+ .+++.+ .++...+.+|.++++|+.++++.|.+
T Consensus       232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence            44455555444455555555555555555 4444445555555555 555555 44434445555555555555555555


Q ss_pred             c
Q 039243           81 R   81 (185)
Q Consensus        81 ~   81 (185)
                      +
T Consensus       310 ~  310 (329)
T 3sb4_A          310 T  310 (329)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.46  E-value=2.6e-08  Score=80.77  Aligned_cols=103  Identities=13%  Similarity=0.095  Sum_probs=66.8

Q ss_pred             CEecCCcCCCCCchhcc-----CCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCchHhhc-----
Q 039243            1 IILLDNNFVGEIPTSIA-----SLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQQLAE-----   66 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----   66 (185)
                      |++++|.+....+..+.     ..++|+.|++++|.+++.    ++..+..+++|++|++++|.++...+..+..     
T Consensus       289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  368 (461)
T 1z7x_W          289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP  368 (461)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCC
Confidence            46777877654433332     225788888888888754    4555666788888888888877554554443     


Q ss_pred             CCCCcEEEecCCcCcC----CCCCC-CcccccccccccCCCC
Q 039243           67 LTSLAFFDVSHNHLRG----AIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        67 l~~L~~l~l~~N~l~~----~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      .++|+.|++++|.+++    .+|.. ...+++..+++.+|+.
T Consensus       369 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          369 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             CCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence            5678888888887764    33332 1345667777777754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.44  E-value=5.9e-09  Score=84.55  Aligned_cols=64  Identities=19%  Similarity=0.162  Sum_probs=31.1

Q ss_pred             CCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCchHhhcC-----CCCcEEEecCCcCc
Q 039243           18 SLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQQLAEL-----TSLAFFDVSHNHLR   81 (185)
Q Consensus        18 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l-----~~L~~l~l~~N~l~   81 (185)
                      .+++|+.|++++|.++..    ++..+..+++|++|++++|.++...+..+...     ++|+.|++++|.++
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence            355566666666655532    34444455555555555555543222222221     34555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.25  E-value=1.7e-07  Score=74.59  Aligned_cols=103  Identities=20%  Similarity=0.123  Sum_probs=72.1

Q ss_pred             CEecCCcCCCCCchhc-----cCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcC
Q 039243            1 IILLDNNFVGEIPTSI-----ASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAEL   67 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l   67 (185)
                      |+|++|.++..-...+     ...++|+.|+|++|.|+..    ++..+...++|++|+|++|.|+..    ++..+...
T Consensus       131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence            5788998875544444     3467899999999998742    444457788999999999998742    24456677


Q ss_pred             CCCcEEEecCCcCcCCCCCC-----CcccccccccccCCCC
Q 039243           68 TSLAFFDVSHNHLRGAIPQG-----TQFSTFANDWFAGNPG  103 (185)
Q Consensus        68 ~~L~~l~l~~N~l~~~~p~~-----~~~~~l~~~~~~~n~~  103 (185)
                      ++|+.|++++|.++......     ...+.+..+++++|+.
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            88999999999886321111     1235677778888864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.23  E-value=6.4e-08  Score=77.14  Aligned_cols=102  Identities=21%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             CEecCCcCCCCCchhc-cCCcccceeecccccccCCCcccc-----cCCCCCCEEeCCCCcCCCC----CchHhhcCCCC
Q 039243            1 IILLDNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTL-----SNLTVIESLDLSSNKLTGQ----IPQQLAELTSL   70 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L   70 (185)
                      |+|++|.++..-...+ ..+++|+.|+|++|.++......+     ...++|+.|+|++|.|+..    ++..+...++|
T Consensus       106 L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L  185 (372)
T 3un9_A          106 VNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV  185 (372)
T ss_dssp             EECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSC
T ss_pred             EEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCc
Confidence            5778887764433333 345678888888888864433333     2457788888888888632    33445667788


Q ss_pred             cEEEecCCcCcCCC----CCC-CcccccccccccCCC
Q 039243           71 AFFDVSHNHLRGAI----PQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        71 ~~l~l~~N~l~~~~----p~~-~~~~~l~~~~~~~n~  102 (185)
                      ++|++++|.+...-    +.. .....+..+++++|.
T Consensus       186 ~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            88888888876311    110 123456666777664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.86  E-value=1.8e-05  Score=53.62  Aligned_cols=60  Identities=22%  Similarity=0.257  Sum_probs=43.2

Q ss_pred             ceeeccccccc-CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCC
Q 039243           23 QTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAI   84 (185)
Q Consensus        23 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~   84 (185)
                      ..++.+++.++ ..+|..+.  .+|+.|+|++|+|+...++.|..+++|+.++|++|.+....
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            36777888776 34554332  46888888888888666667788888888888888886543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.84  E-value=3.3e-06  Score=60.58  Aligned_cols=81  Identities=16%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             CEecCC-cCCCC----CchhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcC
Q 039243            1 IILLDN-NFVGE----IPTSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAEL   67 (185)
Q Consensus         1 L~L~~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l   67 (185)
                      |+|++| .+...    +...+...++|+.|+|++|.|+..    +...+...++|++|+|++|.|+..    +...+...
T Consensus        41 L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n  120 (185)
T 1io0_A           41 VNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSN  120 (185)
T ss_dssp             EECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGC
T ss_pred             EEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhC
Confidence            567888 77642    345566778999999999998732    334455668899999999999843    34456667


Q ss_pred             CCCcEEEe--cCCcCc
Q 039243           68 TSLAFFDV--SHNHLR   81 (185)
Q Consensus        68 ~~L~~l~l--~~N~l~   81 (185)
                      ++|+.|++  +.|.+.
T Consensus       121 ~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          121 TSLIELRIDNQSQPLG  136 (185)
T ss_dssp             SSCCEEECCCCSSCCC
T ss_pred             CCceEEEecCCCCCCC
Confidence            78999999  788886

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.82  E-value=2.8e-06  Score=70.90  Aligned_cols=87  Identities=9%  Similarity=0.069  Sum_probs=41.1

Q ss_pred             ccCCcccceeecccc--cccCCCccccc-CCCCCCEEeCCCCcCCCC-CchHhhcCCCCcEEEecCCcCcCCC-CCC-Cc
Q 039243           16 IASLKGLQTLNLSNN--NLRGYIPLTLS-NLTVIESLDLSSNKLTGQ-IPQQLAELTSLAFFDVSHNHLRGAI-PQG-TQ   89 (185)
Q Consensus        16 ~~~l~~L~~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~-p~~-~~   89 (185)
                      +.++++|+.|+++++  .+++..+..+. .+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.. +.. ..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  511 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK  511 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence            445566666666532  24433333322 255566666666665531 2333345556666666666543211 111 12


Q ss_pred             ccccccccccCCC
Q 039243           90 FSTFANDWFAGNP  102 (185)
Q Consensus        90 ~~~l~~~~~~~n~  102 (185)
                      ++++..+++++|.
T Consensus       512 l~~L~~L~ls~n~  524 (592)
T 3ogk_B          512 LPSLRYLWVQGYR  524 (592)
T ss_dssp             CSSCCEEEEESCB
T ss_pred             cCccCeeECcCCc
Confidence            3445555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=2.9e-05  Score=60.32  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             CcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCc-EEEecCCcCcCCCCCCC-cccccccc
Q 039243           19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLA-FFDVSHNHLRGAIPQGT-QFSTFAND   96 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~-~l~l~~N~l~~~~p~~~-~~~~l~~~   96 (185)
                      +++|+.++|++|.++...+..|.++.+|+.+++++| ++...+.+|.++.+|+ .+++.+ .++...+..+ ...++..+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            789999999999999777788999999999999998 8767777899999999 999988 6664444443 34566777


Q ss_pred             cccCCC
Q 039243           97 WFAGNP  102 (185)
Q Consensus        97 ~~~~n~  102 (185)
                      .+.+|.
T Consensus       303 ~l~~n~  308 (329)
T 3sb4_A          303 LATGDK  308 (329)
T ss_dssp             EECSSC
T ss_pred             EeCCCc
Confidence            765553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.81  E-value=5e-06  Score=59.62  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=62.2

Q ss_pred             hhccCCcccceeecccc-cccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcCCCCcEEEecCCcCcCCC
Q 039243           14 TSIASLKGLQTLNLSNN-NLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAELTSLAFFDVSHNHLRGAI   84 (185)
Q Consensus        14 ~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~   84 (185)
                      ..+...+.|+.|+|++| .|...    +...+...++|++|+|++|.+...    +...+...++|++|++++|.+...-
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            44667889999999999 88632    344566778999999999999742    2344556689999999999986311


Q ss_pred             ----CC-CCcccccccccc--cCCC
Q 039243           85 ----PQ-GTQFSTFANDWF--AGNP  102 (185)
Q Consensus        85 ----p~-~~~~~~l~~~~~--~~n~  102 (185)
                          .. ......+..+.+  .+|.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCC
Confidence                11 112345666677  5554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.81  E-value=5.3e-05  Score=51.20  Aligned_cols=54  Identities=22%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             EecCCcCC-CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCC
Q 039243            2 ILLDNNFV-GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLT   57 (185)
Q Consensus         2 ~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~   57 (185)
                      +.++++++ ..+|..+.  .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        14 ~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           14 DCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             ECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            34455554 23443332  45667777777777555566666777777777777664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.72  E-value=7.4e-06  Score=68.28  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=26.8

Q ss_pred             CCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCC----CCchHhhcCCCCcEEEecCCcC
Q 039243           18 SLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTG----QIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus        18 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      .+++|+.|+|++|.+++.    ++..+..+++|++|++++|.+++    .++..+..+++|+.|++++|.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            344555555555554433    22223334444555555444441    1222233444444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.53  E-value=0.00017  Score=57.89  Aligned_cols=94  Identities=7%  Similarity=0.028  Sum_probs=61.7

Q ss_pred             CcCCCCCchhccCCcccceeeccccccc-----CCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            6 NNFVGEIPTSIASLKGLQTLNLSNNNLR-----GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         6 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      ++++..-..+|.++++|+.+++.+|.+.     ...+..|.++.+|+.+++. +.++.....+|.++.+|+.+++..| +
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c
Confidence            3445455667778888888888777664     3556677888888888887 4466455667778888888888554 4


Q ss_pred             cCCCCCCCcccccccccccCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGN  101 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n  101 (185)
                      +..-+..+.-..+..+.+.+|
T Consensus       335 ~~I~~~aF~~~~L~~l~l~~n  355 (401)
T 4fdw_A          335 TQINFSAFNNTGIKEVKVEGT  355 (401)
T ss_dssp             CEECTTSSSSSCCCEEEECCS
T ss_pred             cEEcHHhCCCCCCCEEEEcCC
Confidence            433333333236666666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.44  E-value=9.9e-06  Score=67.48  Aligned_cols=87  Identities=14%  Similarity=0.147  Sum_probs=57.6

Q ss_pred             ccCCcccceeecccccccCCCcccccC-CCCCCEEeCCCCcCCCCCchHh-hcCCCCcEEEecCCcCcCCCCC-C-Cccc
Q 039243           16 IASLKGLQTLNLSNNNLRGYIPLTLSN-LTVIESLDLSSNKLTGQIPQQL-AELTSLAFFDVSHNHLRGAIPQ-G-TQFS   91 (185)
Q Consensus        16 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~l~~N~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~p~-~-~~~~   91 (185)
                      +..+++|+.|++++ .++...+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... . ..++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            55677888888876 555444444444 7788888888888875544444 5678888888888887432221 1 1356


Q ss_pred             ccccccccCCCC
Q 039243           92 TFANDWFAGNPG  103 (185)
Q Consensus        92 ~l~~~~~~~n~~  103 (185)
                      ++..+.+.+|+.
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            677777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.43  E-value=3.8e-05  Score=54.67  Aligned_cols=60  Identities=12%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             cccceeecccccccCCCcccccCCCCCCEEeCCCCc-CCCCCchHhhcC----CCCcEEEecCCc
Q 039243           20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK-LTGQIPQQLAEL----TSLAFFDVSHNH   79 (185)
Q Consensus        20 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~-l~~~~p~~~~~l----~~L~~l~l~~N~   79 (185)
                      -.|+.||++++.|+..--..+..+++|+.|+|+++. ++..--..+..+    ++|++|+++++.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            358888888888775544556788888888888874 653222334443    368888888764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.27  E-value=5.6e-05  Score=62.94  Aligned_cols=56  Identities=20%  Similarity=0.199  Sum_probs=23.1

Q ss_pred             EecCCcCCCCCchhcc-CCcccceeecccc-cccCC-CcccccCCCCCCEEeCCCCcCC
Q 039243            2 ILLDNNFVGEIPTSIA-SLKGLQTLNLSNN-NLRGY-IPLTLSNLTVIESLDLSSNKLT   57 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~l~~N~l~   57 (185)
                      +|++|.+++..+..+. .+++|+.|+|++| .++.. ++..+..+++|++|++++|.++
T Consensus       111 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~  169 (594)
T 2p1m_B          111 RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD  169 (594)
T ss_dssp             EEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred             EeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence            3444444443333332 3444555555444 22211 2222234444555555544444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.08  E-value=0.00071  Score=54.22  Aligned_cols=69  Identities=12%  Similarity=0.058  Sum_probs=58.3

Q ss_pred             CCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243           10 GEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        10 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ...+.+|.++++|+.++|. +.++..-...|.++.+|+.+++..| ++...+.+|.++ +|+.+++.+|.+.
T Consensus       290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            3556789999999999999 4587677788999999999999665 765667789999 9999999999776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.85  E-value=0.0002  Score=56.73  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=47.5

Q ss_pred             CCcccceeeccc--ccccCC-----Ccccc--cCCCCCCEEeCCCCcCCCCCchHhh---cCCCCcEEEecCCcCcCC--
Q 039243           18 SLKGLQTLNLSN--NNLRGY-----IPLTL--SNLTVIESLDLSSNKLTGQIPQQLA---ELTSLAFFDVSHNHLRGA--   83 (185)
Q Consensus        18 ~l~~L~~L~Ls~--N~l~~~-----~p~~~--~~l~~L~~L~l~~N~l~~~~p~~~~---~l~~L~~l~l~~N~l~~~--   83 (185)
                      .+++|+.|+|+.  |...+.     +...+  ..+++|++|++.+|.++...+..+.   .+++|+.|+++.|.+...  
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            577888887753  221111     11112  2467888888887777643333443   356788888888877642  


Q ss_pred             --CCCC-CcccccccccccCCC
Q 039243           84 --IPQG-TQFSTFANDWFAGNP  102 (185)
Q Consensus        84 --~p~~-~~~~~l~~~~~~~n~  102 (185)
                        ++.. ..++++..+.+..|.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHHHhhcccCCcceEEECCCCc
Confidence              2222 134556666665553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.60  E-value=0.00033  Score=55.45  Aligned_cols=84  Identities=10%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             CcccceeecccccccCCCccccc--CCCCCCEEeCCC--CcCCCC-----CchHh--hcCCCCcEEEecCCcCcCCCCC-
Q 039243           19 LKGLQTLNLSNNNLRGYIPLTLS--NLTVIESLDLSS--NKLTGQ-----IPQQL--AELTSLAFFDVSHNHLRGAIPQ-   86 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~l~~--N~l~~~-----~p~~~--~~l~~L~~l~l~~N~l~~~~p~-   86 (185)
                      +++|+.|+|..+.++...-..+.  .+++|+.|+|+.  |...+.     +...+  ..+++|+.|++.+|.+....+. 
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            67888888888877643333333  678888888742  222111     11112  2467888898888877532111 


Q ss_pred             ---CCcccccccccccCCC
Q 039243           87 ---GTQFSTFANDWFAGNP  102 (185)
Q Consensus        87 ---~~~~~~l~~~~~~~n~  102 (185)
                         ...++.+..++++.|.
T Consensus       272 la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSC
T ss_pred             HHhCccCCCCCEEECCCCC
Confidence               1134566667776553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.12  E-value=0.0054  Score=48.65  Aligned_cols=62  Identities=15%  Similarity=0.109  Sum_probs=39.2

Q ss_pred             hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243           15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus        15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      .|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            4566677777777554 44345566777777777777543 55344556777777777777655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.89  E-value=0.014  Score=46.16  Aligned_cols=85  Identities=14%  Similarity=0.272  Sum_probs=54.6

Q ss_pred             chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCC-C-cc
Q 039243           13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQG-T-QF   90 (185)
Q Consensus        13 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~-~~   90 (185)
                      ..+|.++..|+.+.+. +.++......|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++ .+... + ..
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C  356 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNC  356 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTC
T ss_pred             CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCC
Confidence            4456777888888875 4455455667888888888888754 55344567888888888888654 44 23322 2 23


Q ss_pred             cccccccccCC
Q 039243           91 STFANDWFAGN  101 (185)
Q Consensus        91 ~~l~~~~~~~n  101 (185)
                      .+|..+.+.++
T Consensus       357 ~~L~~i~~~~~  367 (394)
T 4gt6_A          357 TALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEEESSC
T ss_pred             CCCCEEEECCc
Confidence            45666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.83  E-value=0.0042  Score=44.05  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=52.2

Q ss_pred             CEecCCcCCCCCchhccCCcccceeeccccc-ccCCCcccccCC----CCCCEEeCCCC-cCCCCCchHhhcCCCCcEEE
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNN-LRGYIPLTLSNL----TVIESLDLSSN-KLTGQIPQQLAELTSLAFFD   74 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~l~   74 (185)
                      ||++++.++..--..+..+++|+.|+|+++. |+..--..+..+    ++|++|+++++ ++|..--..+..+++|+.|+
T Consensus        66 LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~  145 (176)
T 3e4g_A           66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLF  145 (176)
T ss_dssp             EEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEE
T ss_pred             EeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEE
Confidence            5777877765544556788888888888875 553322334443    36888888876 47643334566788888888


Q ss_pred             ecCC
Q 039243           75 VSHN   78 (185)
Q Consensus        75 l~~N   78 (185)
                      +++.
T Consensus       146 L~~c  149 (176)
T 3e4g_A          146 LSDL  149 (176)
T ss_dssp             EESC
T ss_pred             CCCC
Confidence            8865

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.70  E-value=0.0093  Score=46.85  Aligned_cols=70  Identities=11%  Similarity=0.119  Sum_probs=51.8

Q ss_pred             CCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243            8 FVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         8 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      ++..-..+|.++..|+.+.+..+ ++......|.++.+|+.+.+.++.++.....+|.++.+|+.+++..+
T Consensus       251 v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          251 VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            33334456777888888888654 55455667888889999999888887555677888888998888654

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=95.09  E-value=0.01  Score=31.80  Aligned_cols=15  Identities=13%  Similarity=0.375  Sum_probs=6.3

Q ss_pred             hHhHHHHHHhhhhhh
Q 039243          138 VLAGYASGTIIGVVL  152 (185)
Q Consensus       138 ~~~~~~~~~~~~~~~  152 (185)
                      ++.++++++++++++
T Consensus        13 IA~gVVgGv~~~~ii   27 (44)
T 2ks1_B           13 IATGMVGALLLLLVV   27 (44)
T ss_dssp             STHHHHHHHHHHHHH
T ss_pred             EEeehhHHHHHHHHH
Confidence            444444444443333

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=95.03  E-value=0.015  Score=31.13  Aligned_cols=16  Identities=38%  Similarity=0.630  Sum_probs=7.0

Q ss_pred             hHhHHHHHHhhhhhhh
Q 039243          138 VLAGYASGTIIGVVLG  153 (185)
Q Consensus       138 ~~~~~~~~~~~~~~~~  153 (185)
                      ++.+++++++++++++
T Consensus        12 IA~gVVgGv~~v~ii~   27 (44)
T 2l2t_A           12 IAAGVIGGLFILVIVG   27 (44)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             EEEeehHHHHHHHHHH
Confidence            4444444444433333

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.01  E-value=0.051  Score=42.94  Aligned_cols=64  Identities=14%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCC
Q 039243           13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus        13 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      ..+|.++..|+.+.+..+..+ .-...|.++.+|+.+.+. +.++.....+|.++.+|+.+++..+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~  321 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG  321 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence            456777888888888766554 566778888888888886 4455355567888888888888654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.90  E-value=0.06  Score=42.13  Aligned_cols=86  Identities=10%  Similarity=0.103  Sum_probs=56.9

Q ss_pred             CCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCC-c
Q 039243           11 EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGT-Q   89 (185)
Q Consensus        11 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~   89 (185)
                      .....|.++..|+.+.+..+ ++..-...|.+..+|+.+.+..+ ++......|.++.+|+.+.+.++.++..-...+ .
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence            33456777888888888766 55456677888888888888654 543445678888889998888877763333332 2


Q ss_pred             ccccccccc
Q 039243           90 FSTFANDWF   98 (185)
Q Consensus        90 ~~~l~~~~~   98 (185)
                      ..++..+.+
T Consensus       309 c~~L~~i~l  317 (379)
T 4h09_A          309 CVKLSSVTL  317 (379)
T ss_dssp             CTTCCEEEC
T ss_pred             CCCCCEEEc
Confidence            244554444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.76  E-value=0.011  Score=42.70  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=44.7

Q ss_pred             cCCcccceeecccc-cccC----CCcccccCCCCCCEEeCCCCcCCC----CCchHhhcCCCCcEEEecCCcCc
Q 039243           17 ASLKGLQTLNLSNN-NLRG----YIPLTLSNLTVIESLDLSSNKLTG----QIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        17 ~~l~~L~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      .+-+.|+.|+|++| .|..    .+-..+..-..|+.|+|++|.|..    .+...+..-++|+.|+|+.|.+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            44567888899885 6652    133445556788999999998862    22334555678899999998885

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.31  E-value=0.063  Score=42.40  Aligned_cols=61  Identities=13%  Similarity=0.090  Sum_probs=35.5

Q ss_pred             chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243           13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH   77 (185)
Q Consensus        13 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~   77 (185)
                      ...|..+..++.+....+.+.   ...|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.+
T Consensus       269 ~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          269 GSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             SCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             ccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC
Confidence            344556666666665554432   234666667777776544 4434445666677777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.26  E-value=0.029  Score=40.45  Aligned_cols=65  Identities=15%  Similarity=0.212  Sum_probs=43.5

Q ss_pred             hhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCch----HhhcCCCCcEEEecCC
Q 039243           14 TSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQ----QLAELTSLAFFDVSHN   78 (185)
Q Consensus        14 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~l~~L~~l~l~~N   78 (185)
                      +.+..=+.|+.|+|++|.|...    +...+..-+.|+.|+|+.|.|+..--.    .+..-..|+.|++++|
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            4455557899999999998632    333344557899999999998743222    2333456888888765

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=92.79  E-value=0.07  Score=30.87  Aligned_cols=12  Identities=17%  Similarity=0.368  Sum_probs=4.7

Q ss_pred             HhHHHHHHhhhh
Q 039243          139 LAGYASGTIIGV  150 (185)
Q Consensus       139 ~~~~~~~~~~~~  150 (185)
                      ++|.++++++++
T Consensus        13 vlGg~~~lll~~   24 (70)
T 2klu_A           13 VLGGVAGLLLFI   24 (70)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHH
Confidence            344334433333

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=80.84  E-value=1.4  Score=22.77  Aligned_cols=11  Identities=36%  Similarity=0.791  Sum_probs=4.5

Q ss_pred             hHhHHHHHHhh
Q 039243          138 VLAGYASGTII  148 (185)
Q Consensus       138 ~~~~~~~~~~~  148 (185)
                      +++++++++++
T Consensus        15 I~~~vv~Gv~l   25 (41)
T 2k9y_A           15 VIGGVAVGVVL   25 (41)
T ss_dssp             HHHHHHHHHHH
T ss_pred             EEeehhHHHHH
Confidence            33444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 1e-17
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 50  DLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPL 109
           DL +N++ G +PQ L +L  L   +VS N+L G IPQG     F    +A N  LCG PL
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

Query: 110 S 110
            
Sbjct: 310 P 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 3e-12
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP 61
           L +N   G +P  +  LK L +LN+S NNL G IP    NL   +    ++NK     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL 38
           +  NN  GEIP    +L+       +NN      PL
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 1   IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
           + L  NN     P  ++SL  LQ L  +NN +      +L+NLT I  L    N+++   
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 61  PQQLAELTSLAFFDVSHN 78
           P  LA LT +    ++  
Sbjct: 368 P--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 1e-11
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 19  LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78
           LK L  L L  NN+    P+  S+LT ++ L  ++NK++      LA LT++ +    HN
Sbjct: 306 LKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 79  HLRGAIP 85
            +    P
Sbjct: 362 QISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L   N    +  S   L  + TL      ++    +    L  +  ++ S+N+LT   P 
Sbjct: 29  LGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDGV--EYLNNLTQINFSNNQLTDITP- 83

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWF 98
            L  LT L    +++N +    P     +      F
Sbjct: 84  -LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 8e-06
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQL 64
           +N      P  I +   L  L+L+ N L+     TL++LT +  LDL++N+++   P  L
Sbjct: 206 NNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L 259

Query: 65  AELTSLAFFDVSHNHLRGAIP 85
           + LT L    +  N +    P
Sbjct: 260 SGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 23/102 (22%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP-- 61
           L+ N + +I  ++ASL  L  L+L+NN +    P  LS LT +  L L +N+++   P  
Sbjct: 226 LNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA 282

Query: 62  ------------------QQLAELTSLAFFDVSHNHLRGAIP 85
                               ++ L +L +  +  N++    P
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 7e-09
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
              N    EI +       L+ LN+SNN L   +P     L   E L  S N L  ++P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321

Query: 63  QLAELTSLAFFDVSHNHLRG 82
               L  L    V +N LR 
Sbjct: 322 LPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + NN + E+P     L   + L  S N+L   +P    NL   + L +  N L  + P  
Sbjct: 291 VSNNKLIELPALPPRL---ERLIASFNHLAE-VPELPQNL---KQLHVEYNPLR-EFPDI 342

Query: 64  LAELTSL 70
              +  L
Sbjct: 343 PESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 20 KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79
          +    L L+N  L   +P    +L   ESL  S N LT ++P+      SL    V +N+
Sbjct: 38 RQAHELELNNLGLSS-LPELPPHL---ESLVASCNSLT-ELPE---LPQSLKSLLVDNNN 89

Query: 80 LRG 82
          L+ 
Sbjct: 90 LKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS 53
              N + E+P    +LK    L++  N LR   P    ++   E L ++S
Sbjct: 311 ASFNHLAEVPELPQNLK---QLHVEYNPLRE-FPDIPESV---EDLRMNS 353

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 11  EIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSL 70
           ++P  +        L+L NN +         NL  + +L L +NK++   P   A L  L
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 71  AFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLS 110
               +S N L+    +  +              +     +
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 7e-08
 Identities = 23/108 (21%), Positives = 35/108 (32%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L +N           +LK L TL L NN +    P   + L  +E L LS N+L     +
Sbjct: 38  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLS 110
               L  L   +     +R ++  G                   E  +
Sbjct: 98  MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 6e-07
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLA 65
               G    +   +K L  + +++ N+         +LT    L L  NK+T      L 
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLK 192

Query: 66  ELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEP 108
            L +LA   +S N +          +    +    N  L   P
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP 235

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 2/99 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           + +  +  IP  +     L  L+L  N +      +L  L  +  L LS N ++      
Sbjct: 157 IADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNP 102
           LA    L    +++N L                +   N 
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRG------YIPLTLSNLTVIESLDLSSNKLT 57
           NN + ++P  +A  K +Q + L NNN+          P   +       + L SN + 
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 2e-08
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLS-----NLTVIESLDLSSNKLTG 58
           + ++    +  ++ +   L+ L+LSNN L     L L         ++E L L     + 
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

Query: 59  QIPQQLAELTSLAFFDVSHNHLR 81
           ++  +L  L      +     LR
Sbjct: 441 EMEDRLQAL------EKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 3e-08
 Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 11/106 (10%)

Query: 4   LDNNFVGE--IPTSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSNKLT 57
           +    + +      +  L+  Q + L +  L       I   L     +  L+L SN+L 
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 58  GQIPQQLAEL-----TSLAFFDVSHNHLRGAIPQGTQFSTFANDWF 98
                 + +        +    + +  L GA       +       
Sbjct: 69  DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 4e-08
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 22  LQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAE-----LTSLAF 72
           L+ L L++ ++       +  TL     +  LDLS+N L      QL E        L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 73  FDVSHNHLRGAIPQ 86
             +   +    +  
Sbjct: 431 LVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 6e-08
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 22 LQTLNLSNNNLR-GYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAE----LTSLAFFDVS 76
          +Q+L++    L        L  L   + + L    LT    + ++       +LA  ++ 
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 77 HNHLRGAIPQ 86
           N L      
Sbjct: 64 SNELGDVGVH 73

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 4e-07
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 1/110 (0%)

Query: 2   ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIP-LTLSNLTVIESLDLSSNKLTGQI 60
           +    +   +    +   + L  L + N     ++    L  L  + +L +  + L    
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 61  PQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGLCGEPLS 110
           P        L+  ++S N L     +  Q  +      +GNP  C   L 
Sbjct: 73  PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 2e-06
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 13/85 (15%)

Query: 3   LLDNNFVGEIPTSIA------SLKGLQTLNLSNNNLRGYIPLTL-----SNLTVIESLDL 51
           L D         ++          GLQTL L  N +      TL       +  +  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 52  SSNKLT--GQIPQQLAELTSLAFFD 74
           + N+ +    +  ++ E+ S     
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.9 bits (99), Expect = 7e-06
 Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 20  KGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAELTSLAFFDV 75
           K L+   ++  + +  +   L     ++ + LS N +  +    + + +A    L   + 
Sbjct: 8   KSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 76  SHNHLRGAIPQGTQFSTFANDWFAGNPGLC 105
           S         +  +            P L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 1e-04
 Identities = 9/74 (12%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 4  LDNNFVGEIPTSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSN---KL 56
          +       +   +     ++ + LS N +      ++   +++   +E  + S     ++
Sbjct: 15 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV 74

Query: 57 TGQIPQQLAELTSL 70
            +IP+ L  L   
Sbjct: 75 KDEIPEALRLLLQA 88

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 7e-04
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 11/66 (16%)

Query: 26  NLSNNNLRGYIP------LTLSNLTVIESLDLSSNKLTGQIPQQLAE-----LTSLAFFD 74
            L++  L            +      +++L L  N++     + L       +  L F +
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 75  VSHNHL 80
           ++ N  
Sbjct: 309 LNGNRF 314

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFD 74
           ++ +     +N    NL   +P  L   T    L LS N L       L   T L   +
Sbjct: 5  EVSKVASHLEVNCDKRNLT-ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 75 VSHNH 79
          +    
Sbjct: 62 LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 4  LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK 55
           D   +  +P  +   K    L+LS N L  +   TL   T +  L+L   +
Sbjct: 17 CDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 6   NNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKL 56
           NN        +  L+ L TL L  N+L   IP       ++    L  N  
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 28  SNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN--------- 78
           +NNNL       L+ L  +++L L  N L   IP+       L F  +  N         
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

Query: 79  HLRGAIPQGTQFSTFANDWFAGNPGLCGEPLSGKCGNSEASPAEDDP 125
           + R  +    + + +          +     S +C NS+  P    P
Sbjct: 215 YFRRWLQDNAE-NVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYP 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGY-IPLTLSNLTVIESLDLSSNKLTGQIPQ 62
              +F+ +      S   +Q ++LSN+ +    +   LS  + +++L L   +L+  I  
Sbjct: 30  CPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 89

Query: 63  QLAELTSLAFFDVSHNH 79
            LA+ ++L   ++S   
Sbjct: 90  TLAKNSNLVRLNLSGCS 106

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 16  IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDV 75
           +A+L  L TL   +N +    PL  ++L  +  + L +N+++   P  LA  ++L    +
Sbjct: 169 LANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 76  SH 77
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 5   DNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLS 52
           D+N + +I   +ASL  L  ++L NN +    P  L+N + +  + L+
Sbjct: 181 DDNKISDIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-05
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 13 PTSI------ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAE 66
          PT+I       +L     +    +N+   +  T ++L  I +L      +T    + +  
Sbjct: 6  PTAINVIFPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQY 61

Query: 67 LTSLAFFDVSHNHLRGAIPQGTQFSTFANDWF 98
          L +L   ++  N +    P          +  
Sbjct: 62 LNNLIGLELKDNQITDLAPLKNLTKITELELS 93

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 4e-06
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L    + +      +    + L+L    +   I    + L   +++D S N++       
Sbjct: 3   LTAELIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 64  LAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWFAGNPGL 104
              L  L    V++N +        Q      +    N  L
Sbjct: 61  --LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 7e-04
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQ 63
           L    +  I    A+L     ++ S+N +R         L  +++L +++N++       
Sbjct: 25  LRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGL 82

Query: 64  LAELTSLAFFDVSHNHLR--GAIPQGTQFSTFANDWFAGNPGLC 105
              L  L    +++N L   G +       +        NP   
Sbjct: 83  DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 22  LQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR 81
           LQ L L++N               ++    SS+++   +PQ+LA         ++ N L+
Sbjct: 227 LQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQ 282

Query: 82  G 82
           G
Sbjct: 283 G 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 3   LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQ 62
           L DN        +   L  L  L L  N +          L  ++ L L  N++    P 
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 63  QLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAND-WFAGNPGLCGEPLSG 111
              +L  L    +  N+L     +               NP +C      
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP 245

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 8/83 (9%), Positives = 22/83 (26%), Gaps = 3/83 (3%)

Query: 24  TLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGA 83
           T +     L+  +P+ +   +  + + L  N+++           +L    +  N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 84  IPQGTQFSTFANDWFAGNPGLCG 106
                            +     
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLR 94

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 9e-06
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 23/101 (22%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL--TLSNLTVI--------------- 46
           L +  +  +   +  L  +  L+LS+N LR   P    L  L V+               
Sbjct: 5   LAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63

Query: 47  ----ESLDLSSNKLTG-QIPQQLAELTSLAFFDVSHNHLRG 82
               + L L +N+L      Q L     L   ++  N L  
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 23 QTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH 79
          + L+L++ +L   +   L  L ++  LDLS N+L    P  LA L  L     S N 
Sbjct: 1  RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 54

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 23  QTLNLSNNNLRGYIPL-TLSNLTVIESLDLSSNKLTG------QIPQQLAELTSL 70
           Q L L NN L+    +  L +   +  L+L  N L        ++ + L  ++S+
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 3e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 5   DNNFVGEIPTSI-ASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNK 55
           DNN + E+P  +     G   L++S   +       L NL  + +    + K
Sbjct: 185 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 5e-04
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 1  IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI 60
          + L   + V EIP+ +   +    L      LR       S    +E +++S N +   I
Sbjct: 12 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 61 PQQ 63
             
Sbjct: 70 EAD 72

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.002
 Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 3/76 (3%)

Query: 23 QTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRG 82
          +      + +   IP  L        L     KL        +    L   ++S N +  
Sbjct: 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 83 AIPQGTQFSTFANDWF 98
           I      +       
Sbjct: 68 VIEADVFSNLPKLHEI 83

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 6/40 (15%), Positives = 11/40 (27%)

Query: 39  TLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHN 78
                +    LD+S  ++       L  L  L      + 
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 4   LDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPL--TLSNLTVIESLDLSSNKLTGQIP 61
             ++    +     ++  L +LNLSNN L     +   +     ++ L+LS N+L  +  
Sbjct: 49  RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 108

Query: 62  QQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFANDWF 98
               +   L    +  N L       + + +   + F
Sbjct: 109 LDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 3  LLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ 59
          L   +    +  +   L  +  +  +N++++    +    L  +  L L+ NKLT  
Sbjct: 31 LKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGI--QYLPNVTKLFLNGNKLTDI 83

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 15  SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSS 53
            +A L  LQ L LS N++       L+ L  ++ L+L S
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 11 EIPTSIASLKGLQTLNLSNNNLRGYIPL------TLSNLTVIESLDLSSNKLTGQIPQQL 64
          +        K +         L G IP       TLS L   + L LS+N +  +I   L
Sbjct: 9  DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL 66

Query: 65 AELTSLAFFDVSHNH 79
          + + +L    +  N 
Sbjct: 67 SGMENLRILSLGRNL 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.3
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.9
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.89
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.1
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.81
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.78
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.27
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.76
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.83

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.3e-17  Score=119.78  Aligned_cols=108  Identities=22%  Similarity=0.306  Sum_probs=96.9

Q ss_pred             CEecCCcCCCCC-chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEI-PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |+|++|.|++.+ +..|..+++|+.|+|++|.+.+..+..|..+++|++|++++|+|++..|++|.++++|++|++++|+
T Consensus        34 L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred             EEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCcc
Confidence            689999998644 6678999999999999999999999999999999999999999998778889999999999999999


Q ss_pred             CcCCCCCCC-cccccccccccCCCCCCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~~c~~~  108 (185)
                      |++..|..+ .+.++..+.+.+|++.|.+.
T Consensus       114 l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_         114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ccccCHHHhcCCcccccccccccccccccc
Confidence            998777665 57788999999999998764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8e-16  Score=106.96  Aligned_cols=106  Identities=17%  Similarity=0.170  Sum_probs=91.0

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccc-cccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNN-NLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      +.+++++. ..|..+..+++|+.|++++| .|+...+..|.++++|+.|++++|+|++..|++|..+++|+.|++++|++
T Consensus        14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence            45566665 46777889999999999866 59977788899999999999999999977788999999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                      +...+..+....+..+.+++||+.|+|.
T Consensus        93 ~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          93 ESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             cccChhhhccccccccccCCCcccCCch
Confidence            9666666666678899999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=2.9e-16  Score=120.37  Aligned_cols=110  Identities=34%  Similarity=0.511  Sum_probs=99.4

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +++++...+.+|..+..++.++.+++++|.+++.+| .+..+++|+.|++++|+++|.+|..+..+++|+.|++++|+++
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            567788888889989999999999999999996655 6889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccccccccCCCCCCCCCCCCCC
Q 039243           82 GAIPQGTQFSTFANDWFAGNPGLCGEPLSGKC  113 (185)
Q Consensus        82 ~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C  113 (185)
                      |.+|....+.++..+.+.+|+.+|+.|. ..|
T Consensus       282 g~iP~~~~L~~L~~l~l~~N~~l~g~pl-p~c  312 (313)
T d1ogqa_         282 GEIPQGGNLQRFDVSAYANNKCLCGSPL-PAC  312 (313)
T ss_dssp             EECCCSTTGGGSCGGGTCSSSEEESTTS-SCC
T ss_pred             ccCCCcccCCCCCHHHhCCCccccCCCC-CCC
Confidence            9999887888999999999999999876 355

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.1e-15  Score=111.10  Aligned_cols=106  Identities=26%  Similarity=0.276  Sum_probs=85.6

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++++..++.|..+++|+.|++++|.|+
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            45555555555556666677777777777777666777788899999999999999887888999999999999999999


Q ss_pred             CCCCC-CCcccccccccccCCCCCCCCC
Q 039243           82 GAIPQ-GTQFSTFANDWFAGNPGLCGEP  108 (185)
Q Consensus        82 ~~~p~-~~~~~~l~~~~~~~n~~~c~~~  108 (185)
                       .+|. .+....+..+.+.|||+.|+|.
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             -ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence             5554 4567888999999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=2.5e-15  Score=107.68  Aligned_cols=107  Identities=19%  Similarity=0.309  Sum_probs=87.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|++.+..++.|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|++|..+++|+++++++|.+
T Consensus        59 L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             eeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            57899999999999999999999999999999988889999999999999999999988888899999999999999999


Q ss_pred             cCCCCCCCcccccccccccCCCCCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPGLCGE  107 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~~c~~  107 (185)
                      .+..+.......+....+..|...|..
T Consensus       139 ~~~~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_         139 NCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccchHHHhhhhhhhcccCCCeEeCC
Confidence            865443221122233334444444543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.1e-15  Score=114.14  Aligned_cols=109  Identities=18%  Similarity=0.235  Sum_probs=96.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      +++++|++++..+..|..+++|+.|++++|.+++..+..|.++++|+.+++++|++++..|..|..+++|+.+++++|.+
T Consensus       134 l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             hhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence            46888999988888899999999999999999988889999999999999999999988899999999999999999999


Q ss_pred             cCCCCCCC-cccccccccccCCCCCCCCCC
Q 039243           81 RGAIPQGT-QFSTFANDWFAGNPGLCGEPL  109 (185)
Q Consensus        81 ~~~~p~~~-~~~~l~~~~~~~n~~~c~~~~  109 (185)
                      .+..+..+ ....+..+.+++||+.|+|+.
T Consensus       214 ~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         214 SALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccccccccccccCEEEecCCCCCCCccc
Confidence            97666543 567788899999999998753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=1.3e-14  Score=96.95  Aligned_cols=99  Identities=23%  Similarity=0.260  Sum_probs=82.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |||++|+++.. + .+..+++|+.|++++|+|+ .+|..+..+++|+.|++++|.++ .+|+ +..+++|+.+++++|.+
T Consensus         3 L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           3 LHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-cccccccCeEECCCCcc
Confidence            68999999844 4 4889999999999999999 67888999999999999999999 5554 88999999999999999


Q ss_pred             cCCCC--CCCcccccccccccCCCCC
Q 039243           81 RGAIP--QGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p--~~~~~~~l~~~~~~~n~~~  104 (185)
                      +....  ....++.+..+++.+|+..
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            84432  1234567888889999753

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.43  E-value=4e-14  Score=108.24  Aligned_cols=103  Identities=31%  Similarity=0.467  Sum_probs=86.3

Q ss_pred             CEecCCcCCC--CCchhccCCcccceeeccc-ccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243            1 IILLDNNFVG--EIPTSIASLKGLQTLNLSN-NNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH   77 (185)
Q Consensus         1 L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~   77 (185)
                      |+|++|++.+  .+|++++++++|++|+|++ |.++|.+|..|+++++|++|++++|++++..+..+..+..|+.++++.
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            5788999988  4788999999999999986 889999999999999999999999999988888888888899999999


Q ss_pred             CcCcCCCCCCC-cccccccccccCCCC
Q 039243           78 NHLRGAIPQGT-QFSTFANDWFAGNPG  103 (185)
Q Consensus        78 N~l~~~~p~~~-~~~~l~~~~~~~n~~  103 (185)
                      |.+.+.+|... .+..+..+.+.+|..
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l  161 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccccccCchhhccCcccceeecccccc
Confidence            98888777543 455666666776654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.5e-13  Score=94.68  Aligned_cols=100  Identities=15%  Similarity=0.115  Sum_probs=79.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |||++|+|+.. ++.+..+++|+.|+|++|.|+ .++ .|..+++|++|++++|+++...+..+..+++|+.|++++|.+
T Consensus        23 L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i   99 (162)
T d1a9na_          23 LDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL   99 (162)
T ss_dssp             EECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             EECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceeccccc
Confidence            58899999865 666678899999999999998 444 488899999999999999955555677899999999999998


Q ss_pred             cCCCC--CCCcccccccccccCCCC
Q 039243           81 RGAIP--QGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p--~~~~~~~l~~~~~~~n~~  103 (185)
                      +....  ....++++..+.+.+||.
T Consensus       100 ~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_         100 VELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cccccccccccccccchhhcCCCcc
Confidence            74321  123456778888888874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=1.7e-12  Score=98.54  Aligned_cols=104  Identities=21%  Similarity=0.255  Sum_probs=84.7

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|..++..+..|..++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|..+..+++|+.|++++|++
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             EECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCcc
Confidence            467788888888888888999999999999999888888899999999999999998 6788888899999999999998


Q ss_pred             cCCCCCCC-------cccccccccccCCCCCC
Q 039243           81 RGAIPQGT-------QFSTFANDWFAGNPGLC  105 (185)
Q Consensus        81 ~~~~p~~~-------~~~~l~~~~~~~n~~~c  105 (185)
                      +......+       ...++..+.+.+||+.+
T Consensus       255 ~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            85433221       23556777888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.7e-12  Score=85.39  Aligned_cols=79  Identities=27%  Similarity=0.401  Sum_probs=68.6

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCC-chHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI-PQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|.++ .+|+.+..+++|+.|++++|.|+ .+| .+..+++|+++++++|+++... ...+..+++|+.+++++|+
T Consensus        25 L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          25 LDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             EECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc
Confidence            589999998 46778999999999999999999 455 4899999999999999998432 2568899999999999999


Q ss_pred             CcC
Q 039243           80 LRG   82 (185)
Q Consensus        80 l~~   82 (185)
                      +..
T Consensus       102 i~~  104 (124)
T d1dcea3         102 LCQ  104 (124)
T ss_dssp             GGG
T ss_pred             CCc
Confidence            974

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-12  Score=89.56  Aligned_cols=83  Identities=19%  Similarity=0.156  Sum_probs=69.8

Q ss_pred             CEecCC-cCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDN-NFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++| .++...++.|.++++|+.|+|++|+|+...|..|..+++|++|+|++|+|+...++.+ ...+|+.+++++|+
T Consensus        36 L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~~~l~~L~L~~Np  114 (156)
T d2ifga3          36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNP  114 (156)
T ss_dssp             EECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT-CSCCCCEEECCSSC
T ss_pred             eecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhh-ccccccccccCCCc
Confidence            456666 4887778889999999999999999998889999999999999999999995444445 44579999999999


Q ss_pred             CcCCC
Q 039243           80 LRGAI   84 (185)
Q Consensus        80 l~~~~   84 (185)
                      +.+..
T Consensus       115 ~~C~C  119 (156)
T d2ifga3         115 LHCSC  119 (156)
T ss_dssp             CCCCG
T ss_pred             ccCCc
Confidence            97533

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.1e-13  Score=101.94  Aligned_cols=85  Identities=21%  Similarity=0.269  Sum_probs=80.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++|++++|++++..|..|..+++|+.+++++|++
T Consensus       158 L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            57899999998899999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             cCCCC
Q 039243           81 RGAIP   85 (185)
Q Consensus        81 ~~~~p   85 (185)
                      .+..+
T Consensus       238 ~C~C~  242 (284)
T d1ozna_         238 VCDCR  242 (284)
T ss_dssp             ECSGG
T ss_pred             CCCcc
Confidence            97665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.2e-11  Score=90.82  Aligned_cols=83  Identities=25%  Similarity=0.251  Sum_probs=76.0

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+....+..+..++.++.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.+++++|++
T Consensus       129 L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            467889999888888899999999999999999888888999999999999999999 8898888999999999999999


Q ss_pred             cCCC
Q 039243           81 RGAI   84 (185)
Q Consensus        81 ~~~~   84 (185)
                      .+..
T Consensus       208 ~CdC  211 (266)
T d1p9ag_         208 LCNC  211 (266)
T ss_dssp             CCSG
T ss_pred             CCCc
Confidence            8654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.8e-11  Score=84.06  Aligned_cols=79  Identities=25%  Similarity=0.270  Sum_probs=68.1

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCc--hHhhcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIP--QQLAELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p--~~~~~l~~L~~l~l~~N   78 (185)
                      |+|++|.++..  +.|..+++|+.|++++|+++...+..+..+++|+.|++++|+++ .++  ..+..+++|+.+++++|
T Consensus        46 L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          46 IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             EECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSS
T ss_pred             EECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccchhhcCCC
Confidence            58999999854  35889999999999999999666666788999999999999998 444  46788999999999999


Q ss_pred             cCcC
Q 039243           79 HLRG   82 (185)
Q Consensus        79 ~l~~   82 (185)
                      ++..
T Consensus       123 ~i~~  126 (162)
T d1a9na_         123 PVTN  126 (162)
T ss_dssp             GGGG
T ss_pred             cccc
Confidence            9873

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.95  E-value=7.9e-10  Score=85.46  Aligned_cols=82  Identities=26%  Similarity=0.408  Sum_probs=56.1

Q ss_pred             hccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCcccccc
Q 039243           15 SIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFA   94 (185)
Q Consensus        15 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~   94 (185)
                      .+..+++++.|++++|++++..  .+..+++|+.|++++|+++ .++ .+.++++|+.|++++|++++..| ...++++.
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~  376 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT  376 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCS
T ss_pred             ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence            3556677777888888877543  2677778888888888877 344 47777888888888888775544 33455666


Q ss_pred             cccccCC
Q 039243           95 NDWFAGN  101 (185)
Q Consensus        95 ~~~~~~n  101 (185)
                      .+.+++|
T Consensus       377 ~L~L~~N  383 (384)
T d2omza2         377 QLGLNDQ  383 (384)
T ss_dssp             EEECCCE
T ss_pred             EeeCCCC
Confidence            6666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.91  E-value=2.1e-09  Score=81.04  Aligned_cols=98  Identities=22%  Similarity=0.284  Sum_probs=81.9

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++++|.+.. +|..  .+++|+.|++++|.+++..+..|..++.++.|++++|.+++..+..+.++++|+.|++++|.++
T Consensus       156 ~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         156 RIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             ECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc
Confidence            566777764 4443  3578999999999999889999999999999999999999888888999999999999999998


Q ss_pred             CCCCCC-CcccccccccccCCCC
Q 039243           82 GAIPQG-TQFSTFANDWFAGNPG  103 (185)
Q Consensus        82 ~~~p~~-~~~~~l~~~~~~~n~~  103 (185)
                      . +|.. ..++.++.+.+++|..
T Consensus       233 ~-lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         233 K-VPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             S-CCTTTTTCSSCCEEECCSSCC
T ss_pred             c-cccccccccCCCEEECCCCcc
Confidence            5 4543 4578889999998864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.90  E-value=8.5e-10  Score=85.28  Aligned_cols=73  Identities=32%  Similarity=0.446  Sum_probs=62.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCc
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNH   79 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~   79 (185)
                      |++++|++++..+  +..+++|+.|++++|+|+ .++ .+.++++|++|++++|++++..|  +.++++|+.|++++|.
T Consensus       312 L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             EECCCCCCCCCcc--cccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            5788999987643  788999999999999998 454 58999999999999999996543  7899999999999983

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.89  E-value=5.2e-12  Score=90.62  Aligned_cols=66  Identities=27%  Similarity=0.350  Sum_probs=35.7

Q ss_pred             chhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243           13 PTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        13 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      |..+..+++|+.|+|++|.|+ .++ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            344555566666666666665 333 3555566666666666665 44444433444555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=2.8e-09  Score=75.85  Aligned_cols=95  Identities=22%  Similarity=0.299  Sum_probs=60.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+...  +.+..+++|++|++++|++++..|  +..+++|++|++++|.+. .++. +..++.|+.+++++|..
T Consensus        45 L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          45 LQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             EECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCC
T ss_pred             EECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-cccc-ccccccccccccccccc
Confidence            35666666643  235667777778888777774332  677777777777777776 3443 66777777777777766


Q ss_pred             cCCCCCCCcccccccccccCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      ... +....+..+..+.+++|.
T Consensus       119 ~~~-~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2         119 TDI-DPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             CCC-GGGTTCTTCSEEECCSSC
T ss_pred             ccc-cccchhhhhHHhhhhhhh
Confidence            532 223345556666666664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=5e-09  Score=74.51  Aligned_cols=95  Identities=26%  Similarity=0.385  Sum_probs=73.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |++++|.+++..|  +.++++|+.|++++|.+. .++ .+..++.|+.|++++|.+...  ..+..+++|+.+++++|.+
T Consensus        67 L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          67 INFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCC
T ss_pred             CccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhh
Confidence            5789999987544  889999999999999988 444 378899999999999988743  3467788999999999988


Q ss_pred             cCCCCCCCcccccccccccCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      . .++......++..+.+.+|.
T Consensus       141 ~-~~~~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         141 S-DISALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             C-CCGGGTTCTTCSEEECCSSC
T ss_pred             c-cccccccccccccccccccc
Confidence            7 34444455666666766663

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=3.6e-09  Score=75.92  Aligned_cols=74  Identities=26%  Similarity=0.338  Sum_probs=44.9

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ++++|.+....  .+..+++|+.|++++|+|++..  .+..+++|++|++++|+++ .+| .+..+++|+.+++++|.+.
T Consensus        52 ~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          52 IANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             ECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC
T ss_pred             ECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc-ccc-ccccccccccccccccccc
Confidence            45556655432  2556666777777777766432  2456667777777777766 344 3566666777777666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=1.9e-08  Score=72.01  Aligned_cols=95  Identities=23%  Similarity=0.339  Sum_probs=70.5

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|.+++..  .+..+++|+.|++++|+++ .+| .+..+++|+.|++++|.+. .++ .+..++.++.++++.|.+
T Consensus        73 L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~l  146 (210)
T d1h6ta2          73 LFLNGNKLTDIK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKI  146 (210)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECCSSCC
T ss_pred             EeCCCccccCcc--ccccCcccccccccccccc-ccc-ccccccccccccccccccc-ccc-cccccccccccccccccc
Confidence            578899998754  3678999999999999998 455 4788999999999999887 333 466777788888888877


Q ss_pred             cCCCCCCCcccccccccccCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNP  102 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~  102 (185)
                      +. .+....+..+..+.+.+|.
T Consensus       147 ~~-~~~~~~l~~L~~l~l~~n~  167 (210)
T d1h6ta2         147 TD-ITVLSRLTKLDTLSLEDNQ  167 (210)
T ss_dssp             CC-CGGGGGCTTCSEEECCSSC
T ss_pred             cc-ccccccccccccccccccc
Confidence            63 2333345566666666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=8e-09  Score=75.17  Aligned_cols=81  Identities=16%  Similarity=0.288  Sum_probs=49.3

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCC-cccccCCCCCCEEeCC-CCcCCCCCchHhhcCCCCcEEEecCC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYI-PLTLSNLTVIESLDLS-SNKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~l~-~N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      |+|++|.++...+..|.++++|++|++++|.+...+ +..|..++.++++.+. .|.+....+..|.++++|+.+++++|
T Consensus        34 L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          34 LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             EEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC
T ss_pred             EECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchh
Confidence            456666666555555666666666666666665433 3445666666666653 35555455555666677777777777


Q ss_pred             cCc
Q 039243           79 HLR   81 (185)
Q Consensus        79 ~l~   81 (185)
                      .+.
T Consensus       114 ~l~  116 (242)
T d1xwdc1         114 GIK  116 (242)
T ss_dssp             CCC
T ss_pred             hhc
Confidence            665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.71  E-value=1.9e-08  Score=72.64  Aligned_cols=78  Identities=24%  Similarity=0.333  Sum_probs=53.1

Q ss_pred             ccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCCCCCccccccc
Q 039243           16 IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIPQGTQFSTFAN   95 (185)
Q Consensus        16 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~   95 (185)
                      +...++|+.|++++|.++...  .+.++++|+.|++++|++++ ++. +..+++|++|++++|++++. +....+.++..
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~i-~~l~~l~~L~~  221 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFI  221 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-GGGTTCTTCCE
T ss_pred             hccccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCCC-cccccCCCCCE
Confidence            556777888888888876332  36778888888888888874 443 67788888888888888743 32233444444


Q ss_pred             ccc
Q 039243           96 DWF   98 (185)
Q Consensus        96 ~~~   98 (185)
                      +.+
T Consensus       222 L~l  224 (227)
T d1h6ua2         222 VTL  224 (227)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=1.4e-08  Score=73.48  Aligned_cols=71  Identities=20%  Similarity=0.351  Sum_probs=58.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSH   77 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~   77 (185)
                      |++++|.+....  .+.++++|+.|+|++|++++ ++. +..+++|++|++++|+++ .++. +.++++|+.+++++
T Consensus       156 L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         156 LSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             ccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            356777776443  38899999999999999985 443 889999999999999999 4553 78999999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.62  E-value=2.5e-10  Score=81.61  Aligned_cols=99  Identities=21%  Similarity=0.279  Sum_probs=78.9

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |+|++|+++.. + .+..+++|+.|+|++|.|+ .+|..+..+++|+.|++++|+++ .++ .+..+++|+.|++++|.+
T Consensus        53 L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i  127 (198)
T d1m9la_          53 LALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             EECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEEC
T ss_pred             eECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccccccchh
Confidence            57899998854 4 4888999999999999998 66766666778999999999999 444 478889999999999999


Q ss_pred             cCCCC--CCCcccccccccccCCCCC
Q 039243           81 RGAIP--QGTQFSTFANDWFAGNPGL  104 (185)
Q Consensus        81 ~~~~p--~~~~~~~l~~~~~~~n~~~  104 (185)
                      +....  ....++.+..+.+.+||..
T Consensus       128 ~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         128 TNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccCCCccceeecCCCccc
Confidence            74321  1235677888899999743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.54  E-value=2.4e-07  Score=70.01  Aligned_cols=90  Identities=22%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             CEecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcC
Q 039243            1 IILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHL   80 (185)
Q Consensus         1 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l   80 (185)
                      |||++|.++ .+|+.   +++|+.|+|++|+|+ .+|..+   .+|+.|++++|+++ .+++.   .+.|++|++++|.+
T Consensus        43 LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l  110 (353)
T d1jl5a_          43 LELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQL  110 (353)
T ss_dssp             EECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCC
T ss_pred             EEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccccccc
Confidence            588999987 46653   578999999999999 777654   57888889998888 44431   13588999999988


Q ss_pred             cCCCCCCCcccccccccccCCCC
Q 039243           81 RGAIPQGTQFSTFANDWFAGNPG  103 (185)
Q Consensus        81 ~~~~p~~~~~~~l~~~~~~~n~~  103 (185)
                      . .+|....+..+..+.+.++..
T Consensus       111 ~-~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         111 E-KLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             S-SCCCCTTCTTCCEEECCSSCC
T ss_pred             c-cccchhhhccceeeccccccc
Confidence            7 456555666777777666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8.3e-08  Score=69.60  Aligned_cols=99  Identities=16%  Similarity=0.229  Sum_probs=75.4

Q ss_pred             EecCCcCCCCCchhccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCC-chHhhcCCCCcEEEecC-Cc
Q 039243            2 ILLDNNFVGEIPTSIASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQI-PQQLAELTSLAFFDVSH-NH   79 (185)
Q Consensus         2 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~~~~~l~~L~~l~l~~-N~   79 (185)
                      +.++++++ .+|+.+.  +++++|++++|.|+...+..|.++++|++|++++|.+...+ +..|..++.++.+++.. |.
T Consensus        14 ~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~   90 (242)
T d1xwdc1          14 LCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   90 (242)
T ss_dssp             EEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred             EEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence            45666777 5666553  68999999999999666678999999999999999987544 45688899999998764 67


Q ss_pred             CcCCCCCCC-cccccccccccCCCC
Q 039243           80 LRGAIPQGT-QFSTFANDWFAGNPG  103 (185)
Q Consensus        80 l~~~~p~~~-~~~~l~~~~~~~n~~  103 (185)
                      +....+..+ .+..+..+.+.+|..
T Consensus        91 l~~~~~~~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          91 LLYINPEAFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             CCEECTTSEECCTTCCEEEEESCCC
T ss_pred             ccccccccccccccccccccchhhh
Confidence            775655543 456777777777643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.7e-08  Score=67.24  Aligned_cols=73  Identities=22%  Similarity=0.175  Sum_probs=56.5

Q ss_pred             chhccCCcccceeecccccccCCC--cccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCcCCCC
Q 039243           13 PTSIASLKGLQTLNLSNNNLRGYI--PLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLRGAIP   85 (185)
Q Consensus        13 p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p   85 (185)
                      +..+..+++|++|+|++|+|+...  +..+..+++|+.|++++|.++...+-.+.....|+.+++++|++.....
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            334457899999999999999543  3456789999999999999994433344455679999999999986544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.9e-08  Score=67.15  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             ccCCcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCC--CchHhhcCCCCcEEEecCCcCcCCCCCC--Cccc
Q 039243           16 IASLKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQ--IPQQLAELTSLAFFDVSHNHLRGAIPQG--TQFS   91 (185)
Q Consensus        16 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~~l~~L~~l~l~~N~l~~~~p~~--~~~~   91 (185)
                      +..+..+..++..++... .++..+..+++|++|++++|+|+..  ++..+..+++|+.|++++|.++.. ++.  ....
T Consensus        38 l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l-~~l~~l~~~  115 (162)
T d1koha1          38 LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGL  115 (162)
T ss_dssp             TTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCG-GGHHHHTTC
T ss_pred             hhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccc-hhhhhhhcc
Confidence            444555666666666655 5666667899999999999999954  245678899999999999999843 332  1334


Q ss_pred             ccccccccCCCCCC
Q 039243           92 TFANDWFAGNPGLC  105 (185)
Q Consensus        92 ~l~~~~~~~n~~~c  105 (185)
                      .+..+.+.|||..+
T Consensus       116 ~L~~L~L~~Npl~~  129 (162)
T d1koha1         116 KLEELWLDGNSLSD  129 (162)
T ss_dssp             CCSSCCCTTSTTSS
T ss_pred             ccceeecCCCCcCc
Confidence            56778899998654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.10  E-value=3.6e-06  Score=63.34  Aligned_cols=55  Identities=35%  Similarity=0.406  Sum_probs=30.3

Q ss_pred             CcccceeecccccccCCCcccccCCCCCCEEeCCCCcCCCCCchHhhcCCCCcEEEecCCcCc
Q 039243           19 LKGLQTLNLSNNNLRGYIPLTLSNLTVIESLDLSSNKLTGQIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        19 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +++|++|+|++|+|+ .+|..   +++|+.|++++|+|+ .+|..   +.+|+.|++++|+++
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC
Confidence            345666666666665 44432   345556666666665 44432   335666666666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=7.4e-07  Score=69.42  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=46.5

Q ss_pred             CEecCCcCCCCC-chhccCCcccceeecccccccC----CCcccccCCCCCCEEeCCCCcCCCCCchHhhc-----CCCC
Q 039243            1 IILLDNNFVGEI-PTSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSNKLTGQIPQQLAE-----LTSL   70 (185)
Q Consensus         1 L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~-----l~~L   70 (185)
                      ||++.|+++..- .+.+..++++++|+|++|.++-    .+...+...++|++|||++|.|+...-..+..     ..+|
T Consensus         7 ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L   86 (460)
T d1z7xw1           7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI   86 (460)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCC
T ss_pred             EEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCC
Confidence            467777776532 2334556677777777776652    23344566677777777777765211111211     2357


Q ss_pred             cEEEecCCcCc
Q 039243           71 AFFDVSHNHLR   81 (185)
Q Consensus        71 ~~l~l~~N~l~   81 (185)
                      +.|++++|.++
T Consensus        87 ~~L~L~~n~it   97 (460)
T d1z7xw1          87 QKLSLQNCCLT   97 (460)
T ss_dssp             CEEECTTSCCB
T ss_pred             CEEECCCCCcc
Confidence            77777777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.3e-06  Score=65.62  Aligned_cols=81  Identities=27%  Similarity=0.333  Sum_probs=60.1

Q ss_pred             CEecCCcCCC----CCchhccCCcccceeecccccccCC----Cccccc-CCCCCCEEeCCCCcCCCC----CchHhhcC
Q 039243            1 IILLDNNFVG----EIPTSIASLKGLQTLNLSNNNLRGY----IPLTLS-NLTVIESLDLSSNKLTGQ----IPQQLAEL   67 (185)
Q Consensus         1 L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~l~~N~l~~~----~p~~~~~l   67 (185)
                      |+|++|.++.    .+...+..+++|+.|||++|.|+..    +...+. ...+|+.|++++|.++..    ++..+..+
T Consensus        32 L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~  111 (460)
T d1z7xw1          32 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL  111 (460)
T ss_dssp             EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcc
Confidence            4688888773    3455677899999999999998621    222232 234799999999999743    34556678


Q ss_pred             CCCcEEEecCCcCc
Q 039243           68 TSLAFFDVSHNHLR   81 (185)
Q Consensus        68 ~~L~~l~l~~N~l~   81 (185)
                      ++|+.+++++|.+.
T Consensus       112 ~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         112 PTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCEEECCSSBCH
T ss_pred             ccccccccccccch
Confidence            89999999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.46  E-value=1.8e-05  Score=59.94  Aligned_cols=64  Identities=22%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             CCcccceeecccccccCC-----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcCCCCcEEEecCCcCc
Q 039243           18 SLKGLQTLNLSNNNLRGY-----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        18 ~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ..+.|+.|+|++|.|+..     +...+...++|+.|++++|.++..    +...+..+++|+.|++++|.+.
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            344555555555554321     122234445555555555554311    1222334445555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.32  E-value=2.5e-05  Score=59.16  Aligned_cols=104  Identities=14%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             CEecCCcCCCC-----CchhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCCCchHh----hc-
Q 039243            1 IILLDNNFVGE-----IPTSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQIPQQL----AE-   66 (185)
Q Consensus         1 L~L~~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~p~~~----~~-   66 (185)
                      |+|++|.+...     +...+...++|+.|+|++|.++..    +...+...++|++|++++|.|+......+    .. 
T Consensus       191 L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~  270 (344)
T d2ca6a1         191 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  270 (344)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             cccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhc
Confidence            46778887642     234466788999999999998632    44556788999999999999985433333    22 


Q ss_pred             -CCCCcEEEecCCcCcCCC----CCCC--cccccccccccCCCCC
Q 039243           67 -LTSLAFFDVSHNHLRGAI----PQGT--QFSTFANDWFAGNPGL  104 (185)
Q Consensus        67 -l~~L~~l~l~~N~l~~~~----p~~~--~~~~l~~~~~~~n~~~  104 (185)
                       .+.|+.|++++|.+...-    ....  ....+..+.+++|...
T Consensus       271 ~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         271 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             357999999999875311    0000  2345677788888653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0004  Score=51.04  Aligned_cols=63  Identities=21%  Similarity=0.233  Sum_probs=53.3

Q ss_pred             ccCCcccceeecccc-cccCCCcccccCCCCCCEEeCCC-CcCCCCCchHhhcCCCCcEEEecCC
Q 039243           16 IASLKGLQTLNLSNN-NLRGYIPLTLSNLTVIESLDLSS-NKLTGQIPQQLAELTSLAFFDVSHN   78 (185)
Q Consensus        16 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~l~~-N~l~~~~p~~~~~l~~L~~l~l~~N   78 (185)
                      +..+++|+.|+++++ .++......+..+++|++|++++ +.++......+..+++|+.++++++
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            456889999999986 57777778889999999999998 5787666677888999999999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00029  Score=51.87  Aligned_cols=83  Identities=20%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             Ccccceeecccc--cccCC-CcccccCCCCCCEEeCCCC-cCCCCCchHhhcCCCCcEEEecCC-cCcCCCCC-CCcccc
Q 039243           19 LKGLQTLNLSNN--NLRGY-IPLTLSNLTVIESLDLSSN-KLTGQIPQQLAELTSLAFFDVSHN-HLRGAIPQ-GTQFST   92 (185)
Q Consensus        19 l~~L~~L~Ls~N--~l~~~-~p~~~~~l~~L~~L~l~~N-~l~~~~p~~~~~l~~L~~l~l~~N-~l~~~~p~-~~~~~~   92 (185)
                      .++|+.|++++.  .++.. +...+..+++|++|+++++ .++......+..+++|++|+++++ .++..... ....+.
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            478999999864  34322 3333466899999999985 577677778889999999999984 55432221 123455


Q ss_pred             cccccccCC
Q 039243           93 FANDWFAGN  101 (185)
Q Consensus        93 l~~~~~~~n  101 (185)
                      ++.+.+.|.
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.76  E-value=0.00024  Score=48.18  Aligned_cols=64  Identities=19%  Similarity=0.258  Sum_probs=35.2

Q ss_pred             CCcccceeecccc-cccCC----CcccccCCCCCCEEeCCCCcCCC----CCchHhhcCCCCcEEEecCCcCc
Q 039243           18 SLKGLQTLNLSNN-NLRGY----IPLTLSNLTVIESLDLSSNKLTG----QIPQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        18 ~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~l~~N~l~~----~~p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      +.+.|+.|+|+++ .++..    +-..+...+.|+.|++++|.++.    .+...+...+.|+.|++++|.+.
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            3466777777653 34321    22234455667777777776652    12233444566777777777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.56  E-value=0.00078  Score=45.55  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             CEecCC-cCCCC----CchhccCCcccceeecccccccC----CCcccccCCCCCCEEeCCCCcCCCCCc----hHhhcC
Q 039243            1 IILLDN-NFVGE----IPTSIASLKGLQTLNLSNNNLRG----YIPLTLSNLTVIESLDLSSNKLTGQIP----QQLAEL   67 (185)
Q Consensus         1 L~L~~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~~p----~~~~~l   67 (185)
                      |+|+++ .++..    +-..+...+.|+.|+|++|.++.    .+...+...+.|++|++++|.++..--    ..+...
T Consensus        20 L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n   99 (167)
T d1pgva_          20 VNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVT   99 (167)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTT
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhC
Confidence            456653 34422    23346677889999999999873    233345567899999999999984322    234455


Q ss_pred             CCCcEEEecCCcCc
Q 039243           68 TSLAFFDVSHNHLR   81 (185)
Q Consensus        68 ~~L~~l~l~~N~l~   81 (185)
                      ++|++|++++|.+.
T Consensus       100 ~sL~~L~l~~n~~~  113 (167)
T d1pgva_         100 QSIVEFKADNQRQS  113 (167)
T ss_dssp             CCCSEEECCCCSSC
T ss_pred             CcCCEEECCCCcCC
Confidence            78999999998765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.31  E-value=0.045  Score=36.17  Aligned_cols=66  Identities=17%  Similarity=0.210  Sum_probs=45.4

Q ss_pred             ccCCcccceeeccc-ccccCC----CcccccCCCCCCEEeCCCCcCCCCC----chHhhcCCCCcEEEecCCcCc
Q 039243           16 IASLKGLQTLNLSN-NNLRGY----IPLTLSNLTVIESLDLSSNKLTGQI----PQQLAELTSLAFFDVSHNHLR   81 (185)
Q Consensus        16 ~~~l~~L~~L~Ls~-N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~   81 (185)
                      ..+.+.|+.|+|++ +.++..    +-..+...++|++|++++|.++...    -..+...++++.+++++|.+.
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34568899999987 456422    2334557788999999999886322    123455678899999888764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.83  E-value=0.067  Score=35.26  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             hhccCCcccceeecccccccCC----CcccccCCCCCCEEeCCCCcCCCC----CchHhhcCCCCcEEEec--CCcC
Q 039243           14 TSIASLKGLQTLNLSNNNLRGY----IPLTLSNLTVIESLDLSSNKLTGQ----IPQQLAELTSLAFFDVS--HNHL   80 (185)
Q Consensus        14 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~~----~p~~~~~l~~L~~l~l~--~N~l   80 (185)
                      ..+...++|+.|++++|.++..    +-..+...++++.+++++|.++..    +-..+...++|+.++++  .|.+
T Consensus        40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcC
Confidence            3456788999999999998643    223456678999999999998732    22345566788876664  4555