Citrus Sinensis ID: 039257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Protein Sequence
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENLLS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccccccccEEEcHHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEEEEcccccccccccccccEEEEccccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEccccccccccccHHHHcccccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHHcccHHcccccccccccEEEEEccccccccccHHHHHHcccEEEEEccccccccccccHHHHHHHEEEccccccHHHccHHHHHHHHHHHEcccccHHHHHccccHHHcccccEEEEEEccccccccccccHHHHcc
Coil and Loop (DISEMBL)
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCagagleeapdvkewENVRRLSLMQNQIetlsevptcphfvTLFLDFNGELKMIADGFFQLMPSLkvlkmsncwnlKFLVGMsklgslqllDISQNAIEELPEELKLLINLTClnlrgtgqlnkipRQLISNFSRLRGLRKFITCASSQLKVSTWENLLS
Flexible Loop (DISEMBL)
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRgtgqlnkiprQLISNFSRLRGLRKFITcassqlkvstwenlls
Low Complexity Region (SEG)
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIeelpeelkllinltclnlRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENLLS
Disordered region (IsUnstruct)
**GYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTW*****
Disordered Region (DISOPRED)
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL***TWE****
Disordered Region (DISEMBL)
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENLLS
Disordered Region (DISPRO)
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENLLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	210	2.2.26 [Sep-21-2011]
P60838	894	Probable disease resistan	yes	no	0.790	0.185	0.473	1e-29
O82484	892	Putative disease resistan	no	no	0.895	0.210	0.461	2e-29
O64973	889	Disease resistance protei	no	no	0.890	0.210	0.451	8e-29
Q8L3R3	885	Disease resistance protei	no	no	0.895	0.212	0.455	3e-28
Q8RXS5	888	Probable disease resistan	no	no	0.909	0.215	0.420	7e-28
Q940K0	889	Probable disease resistan	no	no	0.828	0.195	0.437	1e-26
Q9FG91	848	Probable disease resistan	no	no	0.828	0.205	0.429	6e-26
O64789	925	Probable disease resistan	no	no	0.828	0.188	0.422	7e-26
O64790	762	Probable disease resistan	no	no	0.828	0.228	0.443	3e-25
Q42484	909	Disease resistance protei	no	no	0.952	0.220	0.383	5e-25

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 104/169 (61%), Gaps = 3/169 (1%)

Query: 1   NRGYYIVGTLVHVCLL--EEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
           ++GY I+G LV  CLL  E I  ++VKM DVVR+MALWIA +  + K   +V  G GL E
Sbjct: 449 SQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLRE 508

Query: 59  APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
            P VK W +VRR+SLM+N+IE LS  P C    TLFL  N  L  I+D FF+ +P L VL
Sbjct: 509 VPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVL 568

Query: 119 KMSNCWNLKFLVG-MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNL 166
            +S   +L+ L   +SKL SL+ LD+S   I+ LP  L+ L  L  L L
Sbjct: 569 DLSGNSSLRKLPNQISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRL 617

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 111/195 (56%), Gaps = 7/195 (3%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDK--VKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
           N+GY I+GTLV  CLL E   +K  VKM DVVR+MALW   +  K K   +V AG+GL +
Sbjct: 447 NQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGLRK 506

Query: 59  APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
            P V++W  VRRLSLM N IE +S  P CP   TLFL  N  L  I+  FF+ M  L VL
Sbjct: 507 VPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVL 566

Query: 119 KMSNCWNLKFLV-GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177
            +S    L  L   +S+L +L+ LD+S   IE LP  L+ L  L  LNL    +L  I  
Sbjct: 567 DLSENHQLDGLPEQISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAG 626

Query: 178 QLISNFSRLR--GLR 190
             IS  S LR  GLR
Sbjct: 627 --ISKLSSLRTLGLR 639

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  126 bits (317), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 114/195 (58%), Gaps = 8/195 (4%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDK--VKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
           N+GY I+GTLV  CLL E E +K  VKM DVVR+MALWI+ +  K+K   +V AG GL E
Sbjct: 450 NQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLRE 509

Query: 59  APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
            P VK+W  VR++SLM N+IE + +   C    TLFL  N  +K+ A+ FF+ MP L VL
Sbjct: 510 VPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAE-FFRCMPHLVVL 568

Query: 119 KMSNCWNLKFLV-GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177
            +S   +L  L   +S+L SL+  ++S   I +LP  L  L  L  LNL     L  I  
Sbjct: 569 DLSENQSLNELPEEISELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILG 628

Query: 178 QLISNFSRLR--GLR 190
             ISN   LR  GLR
Sbjct: 629 --ISNLWNLRTLGLR 641

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 110/193 (56%), Gaps = 5/193 (2%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDK--VKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
           N+GY I+GTLV   LL E   DK  V M D+VR+MALWI  +  K K   +V AG GL+E
Sbjct: 449 NQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDE 508

Query: 59  APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
            P+V+ W  V+R+SLM N  E +   P C   +TLFL  N +L  I+  FF+ MPSL VL
Sbjct: 509 LPEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVL 568

Query: 119 KMSNCWNLKFLV-GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177
            +S   +L  L   +S+L SLQ LD+S   IE LP  L  L  L  L L  T +L  I  
Sbjct: 569 DLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLESISG 628

Query: 178 QLISNFSRLRGLR 190
             IS  S LR LR
Sbjct: 629 --ISYLSSLRTLR 639

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  124 bits (310), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 113/195 (57%), Gaps = 4/195 (2%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
           N+GY I+G LV  CLL E   + VKM DVVR+MALWIA +  K+K NF+V AG      P
Sbjct: 446 NQGYEIIGILVRSCLLMEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIP 505

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
           ++++W+  RR+SLM N IE++ + P  P  +TL L  N  L  I+  FF+LMP L VL +
Sbjct: 506 EIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNF-LGHISSSFFRLMPMLVVLDL 564

Query: 121 SNCWNLKFLVG-MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
           S   +L+ L   +S+  SLQ L +S+  I   P  L  L  L  LNL  T  +  I    
Sbjct: 565 SMNRDLRHLPNEISECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG-- 622

Query: 180 ISNFSRLRGLRKFIT 194
           IS  + L+ LR F++
Sbjct: 623 ISGLTSLKVLRLFVS 637

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/176 (43%), Positives = 102/176 (57%), Gaps = 2/176 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
           N+GY ++GTL    LL ++      M DVVR+MALWIA +  K+K NF+V AG GL E P
Sbjct: 446 NKGYAMLGTLTRANLLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIP 505

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
            VK+W  VR++SLM N IE ++    C    TLFL  N +LK +   F + M  L VL +
Sbjct: 506 KVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSN-KLKNLPGAFIRYMQKLVVLDL 564

Query: 121 SNCWNL-KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
           S   +  K    +S L SLQ LD+S  +IE +P  LK L  LT L+L  T +L  I
Sbjct: 565 SYNRDFNKLPEQISGLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSI 620

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG91|DRL32_ARATH Probable disease resistance protein At5g43730 OS=Arabidopsis thaliana GN=At5g43730 PE=2 SV=1

 Score =  117 bits (292), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 3/177 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIE-DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEA 59
           N+GY I+G LV   LL E E  DKVKM DV+R+MALWI  +   ++    V +GA +   
Sbjct: 445 NQGYDIIGLLVRAHLLIECELTDKVKMHDVIREMALWINSDFGNQQETICVKSGAHVRLI 504

Query: 60  PDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLK 119
           P+   WE VR++SL+  Q+E ++  P CP+  TL L +N +L  I+ GFF  MP L VL 
Sbjct: 505 PNDISWEIVRQMSLISTQVEKIACSPNCPNLSTLLLPYN-KLVDISVGFFLFMPKLVVLD 563

Query: 120 MSNCWNL-KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
           +S  W+L +    +S LGSLQ L++S   I+ LP  LK L  L  LNL  T  L  +
Sbjct: 564 LSTNWSLIELPEEISNLGSLQYLNLSLTGIKSLPVGLKKLRKLIYLNLEFTNVLESL 620

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score =  117 bits (292), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 109/187 (58%), Gaps = 13/187 (6%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDKVKML-----------DVVRDMALWIACETEKEKINFL 49
           N+GY ++GTL    LL ++  +   +L           DVVR+MALWIA +  K+K NF+
Sbjct: 448 NKGYAMLGTLTRANLLTKVGTELANLLTKVSIYHCVMHDVVREMALWIASDFGKQKENFV 507

Query: 50  VCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFF 109
           V A AGL E P+VK+W  VRR+SLM+N+IE ++    C    TLFL  N +LK ++  F 
Sbjct: 508 VQASAGLHEIPEVKDWGAVRRMSLMRNEIEEITCESKCSELTTLFLQSN-QLKNLSGEFI 566

Query: 110 QLMPSLKVLKMSNCWNLKFLV-GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
           + M  L VL +S+  +   L   +S L SLQ LD+S   IE+LP  LK L  LT L+L  
Sbjct: 567 RYMQKLVVLDLSDNRDFNELPEQISGLVSLQYLDLSFTRIEQLPVGLKELKKLTFLDLAY 626

Query: 169 TGQLNKI 175
           T +L  I
Sbjct: 627 TARLCSI 633

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score =  114 bits (286), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/176 (44%), Positives = 105/176 (59%), Gaps = 2/176 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
           N+GY ++GTL    LL ++  + V M DVVR+MALWIA +  K+K NF+V A  GL E P
Sbjct: 335 NKGYEMLGTLTLANLLTKVGTEHVVMHDVVREMALWIASDFGKQKENFVVRARVGLHERP 394

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
           + K+W  VRR+SLM N IE ++    C    TLFL  N +LK ++  F + M  L VL +
Sbjct: 395 EAKDWGAVRRMSLMDNHIEEITCESKCSELTTLFLQSN-QLKNLSGEFIRYMQKLVVLDL 453

Query: 121 SNCWNL-KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
           S   +  K    +S L SLQ LD+S  +I++LP  LK L  LT LNL  T +L  I
Sbjct: 454 SYNRDFNKLPEQISGLVSLQFLDLSNTSIKQLPVGLKKLKKLTFLNLAYTVRLCSI 509

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score =  114 bits (285), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 103/201 (51%), Gaps = 1/201 (0%)

Query: 2   RGYYIVGTLVHVCLLEE-IEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
           +GY+++G L   CLLE   E  +VKM +VVR  ALW+A E    K   LV    G  EAP
Sbjct: 446 KGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYKELILVEPSMGHTEAP 505

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
             + W     +SL+ N+I+TL E   CP   TL L  N  LK I  GFF  MP L+VL +
Sbjct: 506 KAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDL 565

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
           S     +  + +  L  L  L +S   I  LP+EL  L  L  L+L+ T  L  IPR  I
Sbjct: 566 SFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAI 625

Query: 181 SNFSRLRGLRKFITCASSQLK 201
              S+L  L  + + A  +L+
Sbjct: 626 CWLSKLEVLNLYYSYAGWELQ 646

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
24461863	889	NBS-LRR type disease resistance protein	0.947	0.223	0.719	8e-71
15080718	479	putative disease resistance gene protein	0.909	0.398	0.635	3e-59
24461861	890	NBS-LRR type disease resistance protein	0.909	0.214	0.635	6e-59
24461866	890	NBS-LRR type disease resistance protein	0.938	0.221	0.626	7e-59
24461865	892	NBS-LRR type disease resistance protein	0.9	0.211	0.631	2e-55
24461864	899	NBS-LRR type disease resistance protein	0.914	0.213	0.587	7e-52
359482672	905	PREDICTED: probable disease resistance p	0.909	0.211	0.554	7e-46
297743409	1145	unnamed protein product [Vitis vinifera]	0.866	0.158	0.554	3e-43
359482674	991	PREDICTED: probable disease resistance p	0.866	0.183	0.554	4e-43
147852651	882	hypothetical protein VITISV_017542 [Viti	0.909	0.216	0.528	3e-42

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  272 bits (695), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 161/203 (79%), Gaps = 4/203 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
           N+GY IVGTLV  CLLEEIEDDKVKM DVVR MALWI CE E+EK NFLV AGAGLE+AP
Sbjct: 440 NQGYCIVGTLVDACLLEEIEDDKVKMHDVVRYMALWIVCEIEEEKRNFLVRAGAGLEQAP 499

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
            VKEWENVRRLSLMQN I+ LSEVPTCP   TLFL  N  L+ I DGFF+ MPSLKVLKM
Sbjct: 500 AVKEWENVRRLSLMQNDIKILSEVPTCPDLHTLFLASNNNLQRITDGFFKFMPSLKVLKM 559

Query: 121 SNCWNLKFL---VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177
           S+C +LK L   +GMS LGSL+LLDISQ +I ELPEELKLL+NL CLNLR    L+KIPR
Sbjct: 560 SHCGDLKVLKLPLGMSMLGSLELLDISQTSIGELPEELKLLVNLKCLNLRWATWLSKIPR 619

Query: 178 QLISNFSRLRGLRKFIT-CASSQ 199
           QLISN SRL  LR F T C+ S+
Sbjct: 620 QLISNSSRLHVLRMFATGCSHSE 642

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15080718|gb|AAK83559.1|AF278857_1 putative disease resistance gene protein [Citrus trifoliata]

 Score =  233 bits (594), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 147/192 (76%), Gaps = 1/192 (0%)

Query: 2   RGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPD 61
           +GY++VG LVH CLLEE+++D+VKM DV+RDMALW+AC+ EKEK N+LV AGAGL EAPD
Sbjct: 186 QGYHVVGILVHSCLLEEVDEDEVKMHDVIRDMALWLACDAEKEKENYLVYAGAGLREAPD 245

Query: 62  VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS 121
           V EWE +RRLSLM+NQIE LSEVPTCPH +TLFL+ +  L  I   F Q M  LKVL +S
Sbjct: 246 VIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNSDDILWRINSDFLQSMLRLKVLNLS 305

Query: 122 NCWNLKFL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
               L  L +G+SKL SL+ LD+S + I E+PEELK L+NL CLNL  TG+L KIP QLI
Sbjct: 306 RYMGLLVLPLGISKLVSLEYLDLSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLI 365

Query: 181 SNFSRLRGLRKF 192
           SNFSRL  LR F
Sbjct: 366 SNFSRLHVLRMF 377

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 147/192 (76%), Gaps = 1/192 (0%)

Query: 2   RGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPD 61
           +GY++VG LVH CLLEE+++D+VKM DV+RDMALW+AC+ EKEK N+LV AGAGL EAPD
Sbjct: 451 QGYHVVGILVHSCLLEEVDEDEVKMHDVIRDMALWLACDAEKEKENYLVYAGAGLREAPD 510

Query: 62  VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS 121
           V EWE +RRLSLM+NQIE LSEVPTCPH +TLFL+ +  L  I   F Q M  LKVL +S
Sbjct: 511 VIEWEKLRRLSLMENQIENLSEVPTCPHLLTLFLNSDDILWRINSDFLQSMLRLKVLNLS 570

Query: 122 NCWNLKFL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
               L  L +G+SKL SL+ LD+S + I E+PEELK L+NL CLNL  TG+L KIP QLI
Sbjct: 571 RYMGLLVLPLGISKLVSLEYLDLSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLI 630

Query: 181 SNFSRLRGLRKF 192
           SNFSRL  LR F
Sbjct: 631 SNFSRLHVLRMF 642

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 144/198 (72%), Gaps = 1/198 (0%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
           N+GY+I+G L+H CLLEE  D +VKM DVVRDMALWIAC  EKEK NFLV AG GL EAP
Sbjct: 448 NQGYHILGILLHACLLEEGGDGEVKMHDVVRDMALWIACAIEKEKDNFLVYAGVGLIEAP 507

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
           DV  WE  RRLSLM NQI  LSEV TCPH +TLFL+ N EL+MI + FF+ MPSLKVL +
Sbjct: 508 DVSGWEKARRLSLMHNQITNLSEVATCPHLLTLFLNEN-ELQMIHNDFFRFMPSLKVLNL 566

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
           ++        G+SKL SLQ LD+S+++IEELP ELK L+NL CLNL  T  L  IPRQLI
Sbjct: 567 ADSSLTNLPEGISKLVSLQHLDLSKSSIEELPLELKALVNLKCLNLEYTWSLTTIPRQLI 626

Query: 181 SNFSRLRGLRKFITCASS 198
           SN SRL  LR F    S+
Sbjct: 627 SNLSRLHVLRMFAASHSA 644

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/190 (63%), Positives = 141/190 (74%), Gaps = 1/190 (0%)

Query: 3   GYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDV 62
           GY+I+G L+H CLLEE  D +VKM DV+RDMALWIAC+ E+EK NF V AG GL EAPDV
Sbjct: 451 GYHILGILLHACLLEEGGDGEVKMHDVIRDMALWIACDIEREKENFFVYAGVGLVEAPDV 510

Query: 63  KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
           + WE  RRLSLMQNQI  LSE+PTCPH +TL L+ N   K I + FFQ MPSLKVL +S+
Sbjct: 511 RGWEKARRLSLMQNQIRNLSEIPTCPHLLTLLLNENNLRK-IQNYFFQFMPSLKVLNLSH 569

Query: 123 CWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
           C   K  VG+S+L SLQ LD+S++ IEE P ELK L+NL CL+L  T  L  IPRQLISN
Sbjct: 570 CELTKLPVGISELVSLQHLDLSESDIEEFPGELKALVNLKCLDLEYTRNLITIPRQLISN 629

Query: 183 FSRLRGLRKF 192
            SRLR LR F
Sbjct: 630 LSRLRVLRMF 639

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  209 bits (531), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 139/199 (69%), Gaps = 7/199 (3%)

Query: 1   NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEK------EKINFLVCAGA 54
           +RG+ I+G +VH CLLEE  DD VKM DV+RDM LWIAC+TEK      +K N+LV  GA
Sbjct: 451 DRGHTILGNIVHACLLEEEGDDVVKMHDVIRDMTLWIACDTEKTEDTEKKKENYLVYEGA 510

Query: 55  GLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPS 114
           GL EAP+V+EWEN +RLSLM+ QI  LSEVPTC H +TLFL FN EL+MI   FF+ MP 
Sbjct: 511 GLTEAPNVREWENAKRLSLMETQIRNLSEVPTCLHLLTLFLVFNEELEMITGDFFKSMPC 570

Query: 115 LKVLKMSNCWNL-KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLN 173
           LKVL +S    +  F +G+S L SLQ LD+S  AI+ELP+EL  L NL  LNL  T  L 
Sbjct: 571 LKVLNLSGARRMSSFPLGVSVLVSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHYLI 630

Query: 174 KIPRQLISNFSRLRGLRKF 192
            IPRQLIS FS L  LR F
Sbjct: 631 TIPRQLISRFSCLVVLRMF 649

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 132/193 (68%), Gaps = 2/193 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIE-DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEA 59
           N+GY I+GTL+H CLLEE + D KVK+ DV+RDMALWI CET KE+  FLV AG+ L EA
Sbjct: 446 NQGYNIIGTLIHACLLEEGDVDYKVKLHDVIRDMALWIGCETGKEQDKFLVKAGSTLTEA 505

Query: 60  PDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLK 119
           P+V EW   +R+SLM NQIE L+  P CP+  TLFL  N  LKMI+D FFQ MPSL+VL 
Sbjct: 506 PEVAEWMGPKRISLMDNQIEELTGSPKCPNLSTLFLADNS-LKMISDTFFQFMPSLRVLD 564

Query: 120 MSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
           +S     +   G+S L SLQ L++SQ  I+ELP ELK L  L CL L    QL+ IP QL
Sbjct: 565 LSKNSITELPRGISNLVSLQYLNLSQTNIKELPIELKNLDKLKCLVLVDMPQLSSIPEQL 624

Query: 180 ISNFSRLRGLRKF 192
           IS+ S L+ +  F
Sbjct: 625 ISSLSMLQVIDMF 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743409|emb|CBI36276.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 127/184 (69%), Gaps = 2/184 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIE-DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEA 59
           N+GY I+GTL+H CLLEE + D +VK+ DV+RDMALWIA ET KE+  FLV AG+ L EA
Sbjct: 278 NQGYNIIGTLIHACLLEEGDVDYQVKLHDVIRDMALWIARETGKEQDKFLVKAGSTLTEA 337

Query: 60  PDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLK 119
           P+V EW   +R+SLM NQIE L+  P CP+  TLFL  N  LKMI D FFQ MP+L+VL 
Sbjct: 338 PEVAEWMGPKRISLMNNQIEKLTGSPICPNLSTLFLRENS-LKMITDSFFQFMPNLRVLD 396

Query: 120 MSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
           +S+    +   G+S L SL+ LD+S   I+ELP ELK L NL CL L    QL+ IP QL
Sbjct: 397 LSDNSITELPQGISNLVSLRYLDLSLTEIKELPIELKNLGNLKCLLLSDMPQLSSIPEQL 456

Query: 180 ISNF 183
           IS+ 
Sbjct: 457 ISSL 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 127/184 (69%), Gaps = 2/184 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIE-DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEA 59
           N+GY I+GTL+H CLLEE + D +VK+ DV+RDMALWIA ET KE+  FLV AG+ L EA
Sbjct: 446 NQGYNIIGTLIHACLLEEGDVDYQVKLHDVIRDMALWIARETGKEQDKFLVKAGSTLTEA 505

Query: 60  PDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLK 119
           P+V EW   +R+SLM NQIE L+  P CP+  TLFL  N  LKMI D FFQ MP+L+VL 
Sbjct: 506 PEVAEWMGPKRISLMNNQIEKLTGSPICPNLSTLFLRENS-LKMITDSFFQFMPNLRVLD 564

Query: 120 MSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
           +S+    +   G+S L SL+ LD+S   I+ELP ELK L NL CL L    QL+ IP QL
Sbjct: 565 LSDNSITELPQGISNLVSLRYLDLSLTEIKELPIELKNLGNLKCLLLSDMPQLSSIPEQL 624

Query: 180 ISNF 183
           IS+ 
Sbjct: 625 ISSL 628

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/193 (52%), Positives = 130/193 (67%), Gaps = 2/193 (1%)

Query: 1   NRGYYIVGTLVHVCLLEEIE-DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEA 59
           N+GY I+GTL+H CLLEE + D +VK+ DV+RDMALWIA ET KE+  FLV AG+ L EA
Sbjct: 446 NQGYNIIGTLIHACLLEECDVDYQVKLHDVIRDMALWIARETGKEQDKFLVKAGSTLTEA 505

Query: 60  PDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLK 119
           P+V EW   +R+SLM NQIE L+  P CP+  TLFL  N  LKMI D FFQ MP+L+VL 
Sbjct: 506 PEVAEWMGPKRISLMNNQIEKLTGSPICPNLSTLFLRENS-LKMITDSFFQFMPNLRVLD 564

Query: 120 MSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
           +S+    +    +S L SL+ LD+S   I+ELP ELK L NL CL L    QL+ +P QL
Sbjct: 565 LSDNSITELPREISNLVSLRYLDLSFTEIKELPIELKNLGNLKCLLLSFMPQLSSVPEQL 624

Query: 180 ISNFSRLRGLRKF 192
           IS+   L+ +  F
Sbjct: 625 ISSLLMLQVIDMF 637

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	210
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.685	0.161	0.489	3.4e-27
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.7	0.165	0.463	1.7e-25
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.7	0.165	0.449	2e-24
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.704	0.165	0.470	3.4e-24
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.895	0.212	0.414	1.5e-23
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.680	0.161	0.467	1e-22
TAIR|locus:2170892	848	AT5G43730 [Arabidopsis thalian	0.7	0.173	0.44	2e-22
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.7	0.192	0.436	2.7e-22
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.7	0.163	0.436	7.7e-22
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.7	0.172	0.433	1.7e-20

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 3.4e-27, P = 3.4e-27
 Identities = 72/147 (48%), Positives = 94/147 (63%)

Query:     1 NRGYYIVGTLVHVCLL--EEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
             ++GY I+G LV  CLL  E I  ++VKM DVVR+MALWIA +  + K   +V  G GL E
Sbjct:   449 SQGYEIIGILVRACLLLEEAINKEQVKMHDVVREMALWIASDLGEHKERCIVQVGVGLRE 508

Query:    59 APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
              P VK W +VRR+SLM+N+IE LS  P C    TLFL  N  L  I+D FF+ +P L VL
Sbjct:   509 VPKVKNWSSVRRMSLMENEIEILSGSPECLELTTLFLQKNDSLLHISDEFFRCIPMLVVL 568

Query:   119 KMSNCWNLKFLVG-MSKLGSLQLLDIS 144
              +S   +L+ L   +SKL SL+ LD+S
Sbjct:   569 DLSGNSSLRKLPNQISKLVSLRYLDLS 595

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 70/151 (46%), Positives = 95/151 (62%)

Query:     1 NRGYYIVGTLVHVCLLEEIEDDK--VKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
             N+GY I+GTLV  CLL E E +K  VKM DVVR+MALWI+ +  K+K   +V AG GL E
Sbjct:   450 NQGYEIIGTLVRACLLLEEERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLRE 509

Query:    59 APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
              P VK+W  VR++SLM N+IE + +   C    TLFL  N  +K+ A+ FF+ MP L VL
Sbjct:   510 VPKVKDWNTVRKISLMNNEIEEIFDSHECAALTTLFLQKNDVVKISAE-FFRCMPHLVVL 568

Query:   119 KMSNCWNLKFLVG-MSKLGSLQLLDISQNAI 148
              +S   +L  L   +S+L SL+  ++S   I
Sbjct:   569 DLSENQSLNELPEEISELASLRYFNLSYTCI 599

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 67/149 (44%), Positives = 93/149 (62%)

Query:     1 NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
             N+GY I+G LV  CLL E   + VKM DVVR+MALWIA +  K+K NF+V AG      P
Sbjct:   446 NQGYEIIGILVRSCLLMEENQETVKMHDVVREMALWIASDFGKQKENFIVQAGLQSRNIP 505

Query:    61 DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
             ++++W+  RR+SLM N IE++ + P  P  +TL L  N  L  I+  FF+LMP L VL +
Sbjct:   506 EIEKWKVARRVSLMFNNIESIRDAPESPQLITLLLRKNF-LGHISSSFFRLMPMLVVLDL 564

Query:   121 SNCWNLKFLVG-MSKLGSLQLLDISQNAI 148
             S   +L+ L   +S+  SLQ L +S+  I
Sbjct:   565 SMNRDLRHLPNEISECVSLQYLSLSRTRI 593

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 3.4e-24, P = 3.4e-24
 Identities = 71/151 (47%), Positives = 90/151 (59%)

Query:     1 NRGYYIVGTLVHVCLLEEIEDDK--VKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
             N+GY I+GTLV  CLL E   +K  VKM DVVR+MALW   +  K K   +V AG+GL +
Sbjct:   447 NQGYEILGTLVRACLLSEEGKNKLEVKMHDVVREMALWTLSDLGKNKERCIVQAGSGLRK 506

Query:    59 APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
              P V++W  VRRLSLM N IE +S  P CP   TLFL  N  L  I+  FF+ M  L VL
Sbjct:   507 VPKVEDWGAVRRLSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVL 566

Query:   119 KMSNCWNLKFLVG-MSKLGSLQLLDISQNAI 148
              +S    L  L   +S+L +L+ LD+S   I
Sbjct:   567 DLSENHQLDGLPEQISELVALRYLDLSHTNI 597

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.5e-23, P = 1.5e-23
 Identities = 80/193 (41%), Positives = 102/193 (52%)

Query:     1 NRGYYIVGTLVHVCLLEEIEDDK--VKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
             N+GY I+GTLV   LL E   DK  V M D+VR+MALWI  +  K K   +V AG GL+E
Sbjct:   449 NQGYDILGTLVRSSLLLEGAKDKDVVSMHDMVREMALWIFSDLGKHKERCIVQAGIGLDE 508

Query:    59 APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
              P+V+ W  V+R+SLM N  E +   P C   +TLFL  N +L  I+  FF+ MPSL VL
Sbjct:   509 LPEVENWRAVKRMSLMNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVL 568

Query:   119 KMSNCWNLKFLVG-MSKLGSLQLLDISQNAIXXXXXXXXXXXXXXXXXXRGTGQLNKIPR 177
              +S   +L  L   +S+L SLQ LD+S   I                    T +L  I  
Sbjct:   569 DLSENHSLSELPEEISELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLESISG 628

Query:   178 QLISNFSRLRGLR 190
               IS  S LR LR
Sbjct:   629 --ISYLSSLRTLR 639

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 72/154 (46%), Positives = 95/154 (61%)

Query:     3 GYYIVGTLVHVCLLEEIE--DDK--VKMLDVVRDMALWIACETEKEKINFLVCAGAGLEE 58
             GY I+GTLV   LL E    ++K  VKM DVVR+MALWIA +  K K N +V AG  L E
Sbjct:   451 GYEILGTLVCASLLVEGGKFNNKSYVKMHDVVREMALWIASDLRKHKDNCIVRAGFRLNE 510

Query:    59 APDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
              P VK+W+ V R+SL+ N+I+ +   P CP   TLFL  N  L  I+  FF+ MP L VL
Sbjct:   511 IPKVKDWKVVSRMSLVNNRIKEIHGSPECPKLTTLFLQDNRHLVNISGEFFRSMPRLVVL 570

Query:   119 KMSNCWNLKFLVGM----SKLGSLQLLDISQNAI 148
              +S  WN+  L G+    S+L SL+ LD+S ++I
Sbjct:   571 DLS--WNVN-LSGLPDQISELVSLRYLDLSYSSI 601

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2170892 AT5G43730 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 66/150 (44%), Positives = 91/150 (60%)

Query:     1 NRGYYIVGTLVHVCLLEEIE-DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEA 59
             N+GY I+G LV   LL E E  DKVKM DV+R+MALWI  +   ++    V +GA +   
Sbjct:   445 NQGYDIIGLLVRAHLLIECELTDKVKMHDVIREMALWINSDFGNQQETICVKSGAHVRLI 504

Query:    60 PDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLK 119
             P+   WE VR++SL+  Q+E ++  P CP+  TL L +N +L  I+ GFF  MP L VL 
Sbjct:   505 PNDISWEIVRQMSLISTQVEKIACSPNCPNLSTLLLPYN-KLVDISVGFFLFMPKLVVLD 563

Query:   120 MSNCWNLKFLVG-MSKLGSLQLLDISQNAI 148
             +S  W+L  L   +S LGSLQ L++S   I
Sbjct:   564 LSTNWSLIELPEEISNLGSLQYLNLSLTGI 593

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 65/149 (43%), Positives = 89/149 (59%)

Query:     1 NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
             N+GY ++GTL    LL ++  + V M DVVR+MALWIA +  K+K NF+V A  GL E P
Sbjct:   335 NKGYEMLGTLTLANLLTKVGTEHVVMHDVVREMALWIASDFGKQKENFVVRARVGLHERP 394

Query:    61 DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
             + K+W  VRR+SLM N IE ++    C    TLFL  N +LK ++  F + M  L VL +
Sbjct:   395 EAKDWGAVRRMSLMDNHIEEITCESKCSELTTLFLQSN-QLKNLSGEFIRYMQKLVVLDL 453

Query:   121 SNCWNL-KFLVGMSKLGSLQLLDISQNAI 148
             S   +  K    +S L SLQ LD+S  +I
Sbjct:   454 SYNRDFNKLPEQISGLVSLQFLDLSNTSI 482

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 7.7e-22, P = 7.7e-22
 Identities = 65/149 (43%), Positives = 87/149 (58%)

Query:     1 NRGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAP 60
             N+GY ++GTL    LL ++      M DVVR+MALWIA +  K+K NF+V AG GL E P
Sbjct:   446 NKGYAMLGTLTRANLLTKVGTYYCVMHDVVREMALWIASDFGKQKENFVVQAGVGLHEIP 505

Query:    61 DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
              VK+W  VR++SLM N IE ++    C    TLFL  N +LK +   F + M  L VL +
Sbjct:   506 KVKDWGAVRKMSLMDNDIEEITCESKCSELTTLFLQSN-KLKNLPGAFIRYMQKLVVLDL 564

Query:   121 SNCWNL-KFLVGMSKLGSLQLLDISQNAI 148
             S   +  K    +S L SLQ LD+S  +I
Sbjct:   565 SYNRDFNKLPEQISGLVSLQFLDLSNTSI 593

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 65/150 (43%), Positives = 88/150 (58%)

Query:     1 NRGYYIVGTLVHVCLLEEIE-DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEA 59
             N+G+ I+G+LV   LL + E   KVKM DV+R+MALWIA    K+K    V  G  L   
Sbjct:   447 NKGHDIIGSLVRAHLLMDGELTTKVKMHDVIREMALWIASNFGKQKETLCVKPGVQLCHI 506

Query:    60 PDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLK 119
             P    WE++RR+SLM NQI  +S     P+  TL L  N +L  I+  FF+ MP+L VL 
Sbjct:   507 PKDINWESLRRMSLMCNQIANISSSSNSPNLSTLLLQ-NNKLVHISCDFFRFMPALVVLD 565

Query:   120 MSNCWNLKFLV-GMSKLGSLQLLDISQNAI 148
             +S   +L  L   +SKLGSLQ +++S   I
Sbjct:   566 LSRNSSLSSLPEAISKLGSLQYINLSTTGI 595

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	210
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 7/114 (6%)

Query: 88  PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNA 147
           P+  T+ L  N     I D  F    SL+ L +SN  N    +    + +L+ LD+S N 
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPRGSIPNLETLDLSNNM 151

Query: 148 IE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200
           +  E+P ++    +L  L+L G   + KIP   ++N + L    +F+T AS+QL
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSL----EFLTLASNQL 200

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 67  NVRRLSLMQNQIETLSEVPT--CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N+  L L  N I  +  +      +   L L  N    + +    + +P+LK L +S   
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP--LRNLPNLKNLDLSFND 174

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFS 184
                  +S L +L  LD+S N I +LP E++LL  L  L+L     +  +    +SN  
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL--SSLSNLK 232

Query: 185 RLRGLR 190
            L GL 
Sbjct: 233 NLSGLE 238

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 92  TLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFL--VGMSKLGSLQLLDISQNAI 148
           +L L  N  L +I DG F+ +P+LKVL +S   NL  +     S L SL+ LD+S N +
Sbjct: 4   SLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 6/146 (4%)

Query: 66  ENVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            N++ L L  N+IE+L S +   P+   L L FN +L  +      L  +L  L +S   
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNL-SNLNNLDLSGNK 197

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL--ISN 182
                  +  L +L+ LD+S N+I EL   L  L NL+ L L    +L  +P  +  +SN
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSN 256

Query: 183 FSRLRGLRKFITCASSQLKVSTWENL 208
              L      I+  SS   ++    L
Sbjct: 257 LETLDLSNNQISSISSLGSLTNLREL 282

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	210
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.92
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.5
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.49
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.39
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.37
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.36
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.34
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.33
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.32
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.25
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.21
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.18
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.11
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.11
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.06
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.92
PLN03150	623	hypothetical protein; Provisional	98.92
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.84
PLN03150	623	hypothetical protein; Provisional	98.82
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.51
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.34
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.2
PRK15386	426	type III secretion protein GogB; Provisional	98.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.87
PRK15386	426	type III secretion protein GogB; Provisional	97.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.27
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.82
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.33
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.24
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.05
smart00370	26	LRR Leucine-rich repeats, outliers.	94.05
smart00370	26	LRR Leucine-rich repeats, outliers.	93.79
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.79
KOG4341	483	consensus F-box protein containing LRR [General fu	92.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.18
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.18
KOG4341	483	consensus F-box protein containing LRR [General fu	90.32
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.07
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.82
KOG1947	482	consensus Leucine rich repeat proteins, some prote	83.37
KOG1947	482	consensus Leucine rich repeat proteins, some prote	81.49

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.92  E-value=2.9e-25  Score=193.38  Aligned_cols=193  Identities=40%  Similarity=0.616  Sum_probs=173.8

Q ss_pred             ChHhhHHHHHhHhccceecC----CCeeEehHHHHHHHHHHHhhhccccccEEEecCCCCccCCCccCCCCccEEEeecc
Q 039257            1 NRGYYIVGTLVHVCLLEEIE----DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQN   76 (210)
Q Consensus         1 ~~~~~~~~~L~~~~l~~~~~----~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~   76 (210)
                      |.|+.|+++||++||++.++    ...|+|||+++|+|.|+|++.+.++++++.-.+.+..+.|....+...+++.+.++
T Consensus       454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~  533 (889)
T KOG4658|consen  454 DVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN  533 (889)
T ss_pred             cchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc
Confidence            57999999999999999965    48999999999999999999988888877777778888999999999999999999


Q ss_pred             cccccCCCCCCCCccEEEcccCCC--CcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccch
Q 039257           77 QIETLSEVPTCPHFVTLFLDFNGE--LKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPE  153 (210)
Q Consensus        77 ~~~~l~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~  153 (210)
                      .+..++.....++|++|.+. .+.  +..++..+|..++.|++||+++|..+. +|+.++.+.+|+||+++++.++++|.
T Consensus       534 ~~~~~~~~~~~~~L~tLll~-~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~  612 (889)
T KOG4658|consen  534 KIEHIAGSSENPKLRTLLLQ-RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS  612 (889)
T ss_pred             chhhccCCCCCCccceEEEe-ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence            99988888778899999999 664  788898889999999999999987777 99999999999999999999999999


Q ss_pred             hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257          154 ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC  195 (210)
Q Consensus       154 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  195 (210)
                      +++++..|.+|++..+..+..+|. +...|++||+|.+....
T Consensus       613 ~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  613 GLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence            999999999999999866666755 46679999999997665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=3.8e-19  Score=124.71  Aligned_cols=146  Identities=29%  Similarity=0.435  Sum_probs=107.8

Q ss_pred             ecCCCCccC-CCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257           51 CAGAGLEEA-PDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-  127 (210)
Q Consensus        51 ~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-  127 (210)
                      ++++.++.+ |.+..+.+++.|++.+|+++.+|.. +.+++|+.|++. .+.+..+|.+ |+.++.|++||+..| .+. 
T Consensus        40 LSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprg-fgs~p~levldltyn-nl~e  116 (264)
T KOG0617|consen   40 LSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRG-FGSFPALEVLDLTYN-NLNE  116 (264)
T ss_pred             cccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccc-cCCCchhhhhhcccc-cccc
Confidence            344444444 3455666677777777777776665 667777777776 6667777766 677777777777766 555 


Q ss_pred             --ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcch
Q 039257          128 --FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKV  202 (210)
Q Consensus       128 --l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~  202 (210)
                        +|..|..+..|+.|.++.|.+.-+|..++++++|+.|.++.| .+-++|.+ ++.++.|+.|++.+|++. .+|+
T Consensus       117 ~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~-vlpp  190 (264)
T KOG0617|consen  117 NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT-VLPP  190 (264)
T ss_pred             ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee-ecCh
Confidence              566666666677777777777777888999999999999999 88899988 999999999999999884 4444

>PLN03210 Resistant to P

Probab=99.68  E-value=1.2e-15  Score=138.67  Aligned_cols=190  Identities=23%  Similarity=0.278  Sum_probs=129.2

Q ss_pred             HHHHHhHhccceecCCCeeEehHHHHHHHHHHHhhhccc--cccEEEec----------------------CCCCcc--C
Q 039257            6 IVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKE--KINFLVCA----------------------GAGLEE--A   59 (210)
Q Consensus         6 ~~~~L~~~~l~~~~~~~~~~~hd~~~~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~--~   59 (210)
                      -++.|++++|++... .++.|||++++||+.+++....+  ++.+++..                      -..+..  +
T Consensus       471 ~l~~L~~ksLi~~~~-~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i  549 (1153)
T PLN03210        471 GLKNLVDKSLIHVRE-DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI  549 (1153)
T ss_pred             ChHHHHhcCCEEEcC-CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence            378999999999854 67999999999999998765311  11111100                      000000  0


Q ss_pred             --CCccCC-------------------------------CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccch
Q 039257           60 --PDVKEW-------------------------------ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIAD  106 (210)
Q Consensus        60 --~~~~~~-------------------------------~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~  106 (210)
                        ..+..+                               .+++.|.+.++.++.+|......+|+.|++. ++.+..++.
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~-~s~l~~L~~  628 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ-GSKLEKLWD  628 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECc-Ccccccccc
Confidence              001112                               2355555556656666655556778888888 777777776


Q ss_pred             hHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCC-cCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCC
Q 039257          107 GFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQN-AIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFS  184 (210)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~  184 (210)
                      + +..+++|++++++++..+. +|. ++.+++|++|++++| .+..+|..++++++|+.|++++|..++.+|.. + +++
T Consensus       629 ~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~  704 (1153)
T PLN03210        629 G-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLK  704 (1153)
T ss_pred             c-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCC
Confidence            6 6778888888888774455 663 677888888888887 46688888888888888888888778888874 3 678


Q ss_pred             CCCeEEeeccccCCCcc
Q 039257          185 RLRGLRKFITCASSQLK  201 (210)
Q Consensus       185 ~L~~L~l~~~~~~~~~~  201 (210)
                      +|+.|++++|.....+|
T Consensus       705 sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             CCCEEeCCCCCCccccc
Confidence            88888888776554443

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=2.9e-17  Score=115.34  Aligned_cols=137  Identities=21%  Similarity=0.375  Sum_probs=124.9

Q ss_pred             ccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccC
Q 039257           57 EEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSK  134 (210)
Q Consensus        57 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~  134 (210)
                      .++|....++.+.+|.+++|+++.+|.. ..+.+|++|++. ++.++++|.+ ++.+++|+.|+++-| ++. +|.+|+.
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs  100 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-NNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS  100 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-cchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence            3456666777899999999999988777 889999999999 9999999998 899999999999999 999 9999999


Q ss_pred             CCcCCEEeccCCcCc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257          135 LGSLQLLDISQNAIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       135 l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      ++.|+.||+++|++.  .+|..+..+..|+.|++++| ..+-+|+. ++++++|+.|.+..|.+.+
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh
Confidence            999999999999877  68999999999999999999 89999998 9999999999999998743

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.50  E-value=1.9e-13  Score=123.11  Aligned_cols=132  Identities=24%  Similarity=0.329  Sum_probs=70.2

Q ss_pred             CCccEEEeecccccccCCCCCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCEEe
Q 039257           66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQLLD  142 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~  142 (210)
                      ++|++|++++|.+.+......+++|++|+++ ++.+. .+|.. +..+++|++|++++| .+.  +|..++++++|++|+
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls-~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~  194 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLS-NNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLT  194 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEEECc-CCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCCeee
Confidence            4444444444444321111234555555555 44444 33333 566666666666666 554  566666666666666


Q ss_pred             ccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          143 ISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       143 l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      +++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|++|++++|.+.+.+|
T Consensus       195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccC
Confidence            6666554 45555566666666666665333345543 5555666666665555544433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.49  E-value=2.1e-13  Score=122.76  Aligned_cols=148  Identities=19%  Similarity=0.238  Sum_probs=98.4

Q ss_pred             EecCCCCccCCCccCCCCccEEEeecccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCccce
Q 039257           50 VCAGAGLEEAPDVKEWENVRRLSLMQNQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      .+.++.+........++++++|++++|.+.+ +|.. ..+++|++|+++ ++.+. .+|.. +.++++|++|++++| .+
T Consensus       124 ~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l  200 (968)
T PLN00113        124 NLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG-GNVLVGKIPNS-LTNLTSLEFLTLASN-QL  200 (968)
T ss_pred             ECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECc-cCcccccCChh-hhhCcCCCeeeccCC-CC
Confidence            3334444322223456778888888887763 4433 667788888887 55554 44444 677888888888877 66


Q ss_pred             e--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          127 K--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       127 ~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      .  +|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|+.|++++|.+.+.+|
T Consensus       201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCc
Confidence            5  6777777777788877777766 56777777777777777777333455554 6777777777777776655544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.39  E-value=2.2e-13  Score=98.03  Aligned_cols=128  Identities=28%  Similarity=0.369  Sum_probs=47.1

Q ss_pred             CCCccCCCCccEEEeecccccccCCCC-CCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccc-cCC
Q 039257           59 APDVKEWENVRRLSLMQNQIETLSEVP-TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGM-SKL  135 (210)
Q Consensus        59 ~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~-~~l  135 (210)
                      .+......+++.|++.++.++.+.... .+.+|+.|+++ +|.++.++.  +..++.|++|++++| .++ +++.+ ..+
T Consensus        12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~l   87 (175)
T PF14580_consen   12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLS-NNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNL   87 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-T-TS--S--TT------TT--EEE--SS----S-CHHHHHH-
T ss_pred             ccccccccccccccccccccccccchhhhhcCCCEEECC-CCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhC
Confidence            333334456778888888888776553 57788888888 888888776  677888888888888 888 76544 357


Q ss_pred             CcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEe
Q 039257          136 GSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRK  191 (210)
Q Consensus       136 ~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l  191 (210)
                      ++|+.|.+++|.|..+.  ..+..+++|+.|++.+| .+...+.   .++..+++|+.||-
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCC
Confidence            88888888888777543  35567788888888888 5554443   23567788888775

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.37  E-value=6.3e-14  Score=114.80  Aligned_cols=153  Identities=20%  Similarity=0.268  Sum_probs=69.6

Q ss_pred             EecCCCCccCC--CccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           50 VCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        50 ~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      .++++.++.+.  .+..+..|..|-++.|.++.+|..  ..+++|+.|++. .|.++.+....|+++++|+.|.+.+| .
T Consensus       179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn-rN~irive~ltFqgL~Sl~nlklqrN-~  256 (873)
T KOG4194|consen  179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN-RNRIRIVEGLTFQGLPSLQNLKLQRN-D  256 (873)
T ss_pred             eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc-ccceeeehhhhhcCchhhhhhhhhhc-C
Confidence            34444444433  233344455555555555555443  335555555555 44444443333555555555555555 4


Q ss_pred             ee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcch
Q 039257          126 LK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKV  202 (210)
Q Consensus       126 ~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~  202 (210)
                      +. + ...|..+..+++|++..|+++.+.++ +.+|++|+.|+++.| .+.+|....+...++|+.|+++.|.+ ..+++
T Consensus       257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i-~~l~~  334 (873)
T KOG4194|consen  257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRI-TRLDE  334 (873)
T ss_pred             cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEecccccc-ccCCh
Confidence            44 3 23344444444555554444444322 234444444444444 44444333334444444444444444 33333


Q ss_pred             hhhh
Q 039257          203 STWE  206 (210)
Q Consensus       203 ~~f~  206 (210)
                      .+|.
T Consensus       335 ~sf~  338 (873)
T KOG4194|consen  335 GSFR  338 (873)
T ss_pred             hHHH
Confidence            4433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.36  E-value=3.5e-13  Score=110.53  Aligned_cols=145  Identities=21%  Similarity=0.291  Sum_probs=117.0

Q ss_pred             EecCCCCccCCCccC--CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           50 VCAGAGLEEAPDVKE--WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        50 ~~~~~~~~~~~~~~~--~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      .++.+.++.+|....  -..++.|++.+|.|+.+...  ..+.+|.+|.++ .|.++.+|.-.|.+++.|+.|++.+| .
T Consensus       155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-rNrittLp~r~Fk~L~~L~~LdLnrN-~  232 (873)
T KOG4194|consen  155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS-RNRITTLPQRSFKRLPKLESLDLNRN-R  232 (873)
T ss_pred             hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc-cCcccccCHHHhhhcchhhhhhcccc-c
Confidence            344555555553222  13688999999999876544  677889999999 99999999877888999999999999 9


Q ss_pred             ee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          126 LK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       126 ~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      +. + .-.|.++++|+.|.+.+|.+..+.+ .+..+.++++|++..| .+.....+.+..+++|++|+++.|.+.
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhh
Confidence            88 6 5678889999999999999988764 4578889999999999 788777655788999999999999884

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.34  E-value=8e-14  Score=109.63  Aligned_cols=108  Identities=25%  Similarity=0.284  Sum_probs=96.7

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchh-hhcCCCCc
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLT  162 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~  162 (210)
                      +.+++|..|+++ ++.+.++|.+ ++.+..||.++++.| ++. +|+.+..+..++.+-.+.|.+..+|.. +.++.+|.
T Consensus       432 ~~l~kLt~L~L~-NN~Ln~LP~e-~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  432 SQLQKLTFLDLS-NNLLNDLPEE-MGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             Hhhhcceeeecc-cchhhhcchh-hhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence            778899999999 9999999988 778888999999999 999 998888787788877777888888755 89999999


Q ss_pred             EEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          163 CLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       163 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      +||+.+| .+..+|+. +++|++|++|.+.||++.
T Consensus       509 tLDL~nN-dlq~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNN-DLQQIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCC-chhhCChh-hccccceeEEEecCCccC
Confidence            9999999 99999996 999999999999999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.33  E-value=7.2e-14  Score=115.62  Aligned_cols=143  Identities=24%  Similarity=0.368  Sum_probs=92.2

Q ss_pred             EEecCCCCccCCC-ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCc--ccchhHhcCCCCCcEEecCCcc
Q 039257           49 LVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELK--MIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        49 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      +.++..++..+|+ ...+.+++.|++.+|++..+-.. ..++.||++.+. .|.++  .+|.+ +..+..|.+||+++| 
T Consensus        37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R-~N~LKnsGiP~d-iF~l~dLt~lDLShN-  113 (1255)
T KOG0444|consen   37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR-DNNLKNSGIPTD-IFRLKDLTILDLSHN-  113 (1255)
T ss_pred             EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh-ccccccCCCCch-hcccccceeeecchh-
Confidence            4455566666663 34445667777777776655443 666677777776 55554  46666 556777777777777 


Q ss_pred             cee-ecccccCCCcCCEEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          125 NLK-FLVGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      .++ +|..+...+++..|++++|+|..+|..+ .+|+-|-.||+++| .+..+|+. +..+..|++|.+++|++
T Consensus       114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChh
Confidence            777 7766666667777777777777776543 56666666777776 66667665 66666666666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.33  E-value=2.8e-12  Score=92.29  Aligned_cols=121  Identities=25%  Similarity=0.342  Sum_probs=57.2

Q ss_pred             ccEEEecCCCCccCCCcc-CCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           46 INFLVCAGAGLEEAPDVK-EWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ...+...+..++.+.... .+.+++.|++++|.++.++....++.|++|+++ +|.++.++......+++|+.|.+++| 
T Consensus        21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L~~N-   98 (175)
T PF14580_consen   21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYLSNN-   98 (175)
T ss_dssp             ---------------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred             cccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEECcCC-
Confidence            345677788888887776 577899999999999999888889999999999 99999997653457999999999999 


Q ss_pred             cee-ec--ccccCCCcCCEEeccCCcCcccc----hhhhcCCCCcEEEccC
Q 039257          125 NLK-FL--VGMSKLGSLQLLDISQNAIEELP----EELKLLINLTCLNLRG  168 (210)
Q Consensus       125 ~~~-l~--~~~~~l~~L~~L~l~~~~l~~lp----~~~~~l~~L~~L~l~~  168 (210)
                      .+. +.  ..+..+++|+.|++.+|+++..+    ..+..+|+|+.||-..
T Consensus        99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   99 KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             ---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            998 53  56678999999999999998665    2568899999998543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.32  E-value=2.7e-13  Score=112.33  Aligned_cols=132  Identities=24%  Similarity=0.343  Sum_probs=95.8

Q ss_pred             CccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcC
Q 039257           61 DVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSL  138 (210)
Q Consensus        61 ~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L  138 (210)
                      ++..+..+..|++++|+++.+|.. ....+..+|+++ +|.+..||...|-++..|-+||+++| ++. +|+.+..+.+|
T Consensus        98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSML  175 (1255)
T ss_pred             hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhh
Confidence            455667788888888888888776 666778888888 88888888887888888888888888 888 88777777777


Q ss_pred             CEEeccCCcCc-----ccc---------------------hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEee
Q 039257          139 QLLDISQNAIE-----ELP---------------------EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKF  192 (210)
Q Consensus       139 ~~L~l~~~~l~-----~lp---------------------~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~  192 (210)
                      ++|.+++|++.     .+|                     .++..+.+|..+|++.| .+..+|.. +.++++|+.|+++
T Consensus       176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec-ly~l~~LrrLNLS  253 (1255)
T KOG0444|consen  176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC-LYKLRNLRRLNLS  253 (1255)
T ss_pred             hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHH-HhhhhhhheeccC
Confidence            77777776543     233                     34445556666666666 66666664 6666677777776


Q ss_pred             cccc
Q 039257          193 ITCA  196 (210)
Q Consensus       193 ~~~~  196 (210)
                      +|.+
T Consensus       254 ~N~i  257 (1255)
T KOG0444|consen  254 GNKI  257 (1255)
T ss_pred             cCce
Confidence            6665

>PLN03210 Resistant to P

Probab=99.25  E-value=9e-11  Score=107.27  Aligned_cols=142  Identities=26%  Similarity=0.300  Sum_probs=117.2

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      .+.+.+..++.+|....+.+|+.|++.++.++.++.. ..+++|+.++++++..++.+|.  +..+++|+.|++++|..+
T Consensus       593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L  670 (1153)
T PLN03210        593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL  670 (1153)
T ss_pred             EEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc
Confidence            4455566677778766778999999999999888765 7789999999995566778875  788999999999998667


Q ss_pred             e-ecccccCCCcCCEEeccCC-cCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          127 K-FLVGMSKLGSLQLLDISQN-AIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      . +|..++++.+|+.|++++| .++.+|..+ ++++|+.|++++|..+..+|..    .++|+.|++.+|.+
T Consensus       671 ~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i  737 (1153)
T PLN03210        671 VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAI  737 (1153)
T ss_pred             cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcc
Confidence            7 9999999999999999997 677888766 7899999999999777777752    45788888888875

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.23  E-value=5.9e-13  Score=104.46  Aligned_cols=75  Identities=20%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             ccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          132 MSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       132 ~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      |+.+++|+.|++++|.++++. ..+..+..++.|.+..| .+..+...+|..+..|+.|++.+|+++ .+.+.+|..+
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~  345 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTL  345 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeE-EEeccccccc
Confidence            444555555666665555443 23345555555555555 555555556777888889999998884 4445566544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.22  E-value=4e-13  Score=105.76  Aligned_cols=125  Identities=23%  Similarity=0.362  Sum_probs=97.1

Q ss_pred             CCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-eccccc-CCCcCCEE
Q 039257           65 WENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMS-KLGSLQLL  141 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~-~l~~L~~L  141 (210)
                      |+.++.++...|.++.+|.. .++..|.-|++. .+.+..+|.  |.++..|..+.++.| .++ +|.+.+ ++.++..|
T Consensus       182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~-~Nki~~lPe--f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLR-RNKIRFLPE--FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHhcccchhhhhcCChhhcchhhhHHHHhh-hcccccCCC--CCccHHHHHHHhccc-HHHhhHHHHhcccccceee
Confidence            55566666666666666665 667777777777 777777774  777777777777777 777 775555 78888888


Q ss_pred             eccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          142 DISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       142 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      |++.|.++++|.+++.+.+|..||+++| .++.+|.. ++++ .|+.|-+-||++
T Consensus       258 DLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  258 DLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPL  309 (565)
T ss_pred             eccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCch
Confidence            8888888888888888888888888888 88888886 8888 888888888876

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.21  E-value=1.1e-12  Score=100.00  Aligned_cols=132  Identities=26%  Similarity=0.416  Sum_probs=113.2

Q ss_pred             ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257           62 VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ  139 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  139 (210)
                      +..|+.+..+++++|.|+.+... .-.+.++.|+++ .|.+..+..  +..+++|+.||+++| .++ +..+--.+.+.+
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS-~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILS-QNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEecc-ccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence            45678899999999999988877 667999999999 999998887  778999999999999 888 765555788899


Q ss_pred             EEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccCCC
Q 039257          140 LLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      .|.+++|.+..+ ++++++.+|..||+++| .+..+.. ..+++++.|+++.+.+|++.+.
T Consensus       356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            999999999888 57899999999999999 7776653 2289999999999999998544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.20  E-value=1.3e-10  Score=101.04  Aligned_cols=119  Identities=24%  Similarity=0.322  Sum_probs=81.2

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      .-+.+.+.+++.+|..- .+.++.|++.+|.++.+|... ..+|+.|+++ +|.++.+|.. +  ..+|+.|++++| .+
T Consensus       181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls-~N~LtsLP~~-l--~~~L~~L~Ls~N-~L  253 (754)
T PRK15370        181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYAN-SNQLTSIPAT-L--PDTIQEMELSIN-RI  253 (754)
T ss_pred             eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECC-CCccccCChh-h--hccccEEECcCC-cc
Confidence            34556677788887532 257888999999888877642 2578888888 7778877765 2  236777777777 77


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR  177 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~  177 (210)
                      . +|..+.  .+|++|++++|.++.+|..+.  .+|+.|++++| .++.+|.
T Consensus       254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~  300 (754)
T PRK15370        254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPA  300 (754)
T ss_pred             CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcc
Confidence            7 765553  367777777777776665442  46777777776 5666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.18  E-value=2.1e-12  Score=110.61  Aligned_cols=137  Identities=20%  Similarity=0.236  Sum_probs=108.3

Q ss_pred             CCccEEEeecccccc--cCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEe
Q 039257           66 ENVRRLSLMQNQIET--LSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLD  142 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~--l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~  142 (210)
                      +.++.|.+.+|.++.  +|...++.+|++|+++ +|.++.+|...+.+++.|+.|+++|| +++ +|..+-++..|++|.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs-yNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLS-YNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeec-ccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHh
Confidence            356677777777764  5555888999999999 99999999888899999999999999 999 998888999999999


Q ss_pred             ccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          143 ISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       143 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      ..+|.+..+| ++..++.|+.+|++.| .+..+-.......++|++||++||.. ..+....|+.
T Consensus       437 ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~-l~~d~~~l~~  498 (1081)
T KOG0618|consen  437 AHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR-LVFDHKTLKV  498 (1081)
T ss_pred             hcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc-cccchhhhHH
Confidence            9999999898 7889999999999988 66554322122237899999999985 3334444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.11  E-value=1.3e-09  Score=94.73  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=57.8

Q ss_pred             HHHHHHhhhccccccEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCC
Q 039257           33 MALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLM  112 (210)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l  112 (210)
                      .|....+++.......+.+....++.+|..- ...++.|.+.+|.++.+|..  .++|++|+++ +|.++.+|..    .
T Consensus       190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs-~N~LtsLP~l----p  261 (788)
T PRK15387        190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVS-GNQLTSLPVL----P  261 (788)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEec-CCccCcccCc----c
Confidence            3333333333344556778888888888632 24788889999888887753  5788888888 7788877642    2


Q ss_pred             CCCcEEecCCcccee-ec
Q 039257          113 PSLKVLKMSNCWNLK-FL  129 (210)
Q Consensus       113 ~~L~~L~l~~~~~~~-l~  129 (210)
                      ++|+.|++.+| .++ +|
T Consensus       262 ~sL~~L~Ls~N-~L~~Lp  278 (788)
T PRK15387        262 PGLLELSIFSN-PLTHLP  278 (788)
T ss_pred             cccceeeccCC-chhhhh
Confidence            45566666666 555 44

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.11  E-value=2.1e-10  Score=99.49  Aligned_cols=81  Identities=23%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             CCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEe
Q 039257          113 PSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRK  191 (210)
Q Consensus       113 ~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l  191 (210)
                      .+|+.|++++| .++ +|..   ..+|+.|++++|.++.+|...   .+|+.|++++| .++.+|.. +..+++|+.+++
T Consensus       382 ~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~N-qLt~LP~s-l~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGN-RLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRN-QLTRLPES-LIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCC-cccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhhhccC-cccccChH-HhhccCCCeEEC
Confidence            35677777777 776 6643   246778888888888777532   45778889888 78899986 889999999999


Q ss_pred             eccccCCCcch
Q 039257          192 FITCASSQLKV  202 (210)
Q Consensus       192 ~~~~~~~~~~~  202 (210)
                      ++|++.+..+.
T Consensus       453 s~N~Ls~~~~~  463 (788)
T PRK15387        453 EGNPLSERTLQ  463 (788)
T ss_pred             CCCCCCchHHH
Confidence            99999766543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.10  E-value=7.7e-12  Score=107.22  Aligned_cols=144  Identities=26%  Similarity=0.335  Sum_probs=114.6

Q ss_pred             EecCCCCccCCCccC-CCCccEEEeecccccccCCC---------------------------CCCCCccEEEcccCCCC
Q 039257           50 VCAGAGLEEAPDVKE-WENVRRLSLMQNQIETLSEV---------------------------PTCPHFVTLFLDFNGEL  101 (210)
Q Consensus        50 ~~~~~~~~~~~~~~~-~~~l~~L~l~~~~~~~l~~~---------------------------~~~~~L~~L~l~~~~~~  101 (210)
                      .+...++..+|.... ++.++.|+++.|.+..+|..                           ..++.|+.|.+. +|.+
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-nN~L  371 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-NNHL  371 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-cCcc
Confidence            344556666665544 77889999998887765432                           233445556666 6666


Q ss_pred             cc--cchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257          102 KM--IADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR  177 (210)
Q Consensus       102 ~~--~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~  177 (210)
                      ++  +|.  +.++++|++|+++.| ++. +| ..+.++..|+.|+++||.++.+|.++.++..|++|...+| .+..+|.
T Consensus       372 td~c~p~--l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe  447 (1081)
T KOG0618|consen  372 TDSCFPV--LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPE  447 (1081)
T ss_pred             cccchhh--hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechh
Confidence            63  333  779999999999999 999 87 5677899999999999999999999999999999999999 8999994


Q ss_pred             ccccCCCCCCeEEeeccccCCCc
Q 039257          178 QLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       178 ~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                        +..++.|+.+|++.|.+.-..
T Consensus       448 --~~~l~qL~~lDlS~N~L~~~~  468 (1081)
T KOG0618|consen  448 --LAQLPQLKVLDLSCNNLSEVT  468 (1081)
T ss_pred             --hhhcCcceEEecccchhhhhh
Confidence              899999999999999886443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.06  E-value=2.4e-11  Score=95.61  Aligned_cols=148  Identities=23%  Similarity=0.282  Sum_probs=120.1

Q ss_pred             cccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257           45 KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN  122 (210)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  122 (210)
                      +...+.|.+.+++++|.--. .....+.+..|+|+.+|..  ..+++||.|+++ .|.|+.|.++.|.+++.+-.|-+.+
T Consensus        47 ~g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   47 EGGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             CCceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhc
Confidence            35677888999999885332 4677888889999988876  788999999999 8889998888899998887766666


Q ss_pred             -cccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          123 -CWNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       123 -~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                       | +|+ +| ..|+++..|+.|.+.-|.+.-+ ...+..++++..|.+-+| .+..++...+..+..++++++..|++
T Consensus       125 ~N-kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  125 NN-KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             CC-chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcc
Confidence             6 888 87 6778888888888887777744 466788889988999888 88888886688899999999888874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.05  E-value=6.5e-10  Score=96.70  Aligned_cols=140  Identities=18%  Similarity=0.265  Sum_probs=72.3

Q ss_pred             EEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257           49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-  127 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-  127 (210)
                      +.+.++.++.+|... ...++.|++++|.+..+|... ..+|+.|+++ ++.+..+|.. +  ..+|+.|++++| .++ 
T Consensus       225 L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls-~N~L~~LP~~-l--~~sL~~L~Ls~N-~Lt~  297 (754)
T PRK15370        225 LYANSNQLTSIPATL-PDTIQEMELSINRITELPERL-PSALQSLDLF-HNKISCLPEN-L--PEELRYLSVYDN-SIRT  297 (754)
T ss_pred             EECCCCccccCChhh-hccccEEECcCCccCcCChhH-hCCCCEEECc-CCccCccccc-c--CCCCcEEECCCC-cccc
Confidence            344555555555321 235666666666665554431 1345556665 5555555543 1  134555555555 555 


Q ss_pred             eccccc-------------------CCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCe
Q 039257          128 FLVGMS-------------------KLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRG  188 (210)
Q Consensus       128 l~~~~~-------------------~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~  188 (210)
                      +|..+.                   -.++|++|++++|.++.+|..+  .++|+.|++++| .+..+|.. +  .++|+.
T Consensus       298 LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~-l--p~~L~~  371 (754)
T PRK15370        298 LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKN-QITVLPET-L--PPTITT  371 (754)
T ss_pred             CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCcccEEECCCC-CCCcCChh-h--cCCcCE
Confidence            443221                   0134555555555555555443  246666666666 56666653 3  246666


Q ss_pred             EEeeccccCCCcch
Q 039257          189 LRKFITCASSQLKV  202 (210)
Q Consensus       189 L~l~~~~~~~~~~~  202 (210)
                      |++++|.+. .+|.
T Consensus       372 LdLs~N~Lt-~LP~  384 (754)
T PRK15370        372 LDVSRNALT-NLPE  384 (754)
T ss_pred             EECCCCcCC-CCCH
Confidence            666666653 3443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=2.3e-11  Score=99.63  Aligned_cols=132  Identities=24%  Similarity=0.340  Sum_probs=116.1

Q ss_pred             ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257           62 VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL  140 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~  140 (210)
                      +..+..+..++++.|++..+|.....--|+.|.++ +|.++.+|.. ++....|..|+.+.| .+. +|..++++..|+.
T Consensus       117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s-NNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS-NNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe-cCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHH
Confidence            45566788899999999988888666668999999 9999999988 778889999999999 888 9999999999999


Q ss_pred             EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      |.+++|.+..+|+++..| .|..||++.| ++..||.. |.+|+.|++|-+.+|++.+.
T Consensus       194 l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  194 LNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCCC
Confidence            999999999999998854 4888999999 99999998 99999999999999998554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=1.5e-09  Score=64.60  Aligned_cols=57  Identities=35%  Similarity=0.486  Sum_probs=31.8

Q ss_pred             CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCc
Q 039257           89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNA  147 (210)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~  147 (210)
                      +|++|+++ .+.++.++++.|.++++|++|++++| .++ + |..+.++++|++|++++|+
T Consensus         2 ~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEET-SSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555 55555555554555555555555555 555 4 3455555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.92  E-value=1e-09  Score=65.41  Aligned_cols=58  Identities=34%  Similarity=0.473  Sum_probs=31.7

Q ss_pred             cCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257          137 SLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC  195 (210)
Q Consensus       137 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  195 (210)
                      +|++|++++|.++.+|. .+..+++|++|++++| .+..++...|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555543 3355555555555555 5555555445555556666555554

...

>PLN03150 hypothetical protein; Provisional

Probab=98.92  E-value=6.4e-09  Score=89.54  Aligned_cols=107  Identities=22%  Similarity=0.371  Sum_probs=70.1

Q ss_pred             ccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEE
Q 039257           90 FVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLN  165 (210)
Q Consensus        90 L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~  165 (210)
                      ++.|++. ++.+. .+|.. +..+++|+.|++++| .+.  +|..++.+.+|+.|++++|.++ .+|..++++++|+.|+
T Consensus       420 v~~L~L~-~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLD-NQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECC-CCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            5566776 55555 44444 677777777777777 665  6767777777777777777766 5677777777777777


Q ss_pred             ccCCCCCCCCCcccccC-CCCCCeEEeeccccCCCc
Q 039257          166 LRGTGQLNKIPRQLISN-FSRLRGLRKFITCASSQL  200 (210)
Q Consensus       166 l~~~~~~~~lp~~~~~~-l~~L~~L~l~~~~~~~~~  200 (210)
                      +++|.....+|.. ++. ..++..+++.+|......
T Consensus       497 Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        497 LNGNSLSGRVPAA-LGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CcCCcccccCChH-HhhccccCceEEecCCccccCC
Confidence            7777444566664 443 245566777666654443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=1.6e-09  Score=88.49  Aligned_cols=146  Identities=26%  Similarity=0.384  Sum_probs=93.1

Q ss_pred             EEecCCCCccCCCccCCC--CccEEEeecccccccC-CCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           49 LVCAGAGLEEAPDVKEWE--NVRRLSLMQNQIETLS-EVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      .......++.++......  +++.|++.+|.+..++ ....+++|+.|+++ .+.+.+++.. ....+.|+.|++++| .
T Consensus       121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~-~~~~~~L~~L~ls~N-~  197 (394)
T COG4886         121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKL-LSNLSNLNNLDLSGN-K  197 (394)
T ss_pred             EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchhhhhhhh-hhhhhhhhheeccCC-c
Confidence            345556666666655443  6777777777777764 33667777777777 7777777764 336677777777777 7


Q ss_pred             ee-ecccccCCCcCCEEeccCC-----------------------cCcccchhhhcCCCCcEEEccCCCCCCCCCccccc
Q 039257          126 LK-FLVGMSKLGSLQLLDISQN-----------------------AIEELPEELKLLINLTCLNLRGTGQLNKIPRQLIS  181 (210)
Q Consensus       126 ~~-l~~~~~~l~~L~~L~l~~~-----------------------~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~  181 (210)
                      +. +|..+..+..|+++.+++|                       .+..++..++.++.++.|++++| .+..++.  ++
T Consensus       198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~--~~  274 (394)
T COG4886         198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISS--LG  274 (394)
T ss_pred             cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccccccc--cc
Confidence            77 6654444444555555555                       33333344556666777777777 6666665  66


Q ss_pred             CCCCCCeEEeeccccCCCc
Q 039257          182 NFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       182 ~l~~L~~L~l~~~~~~~~~  200 (210)
                      .+.+++.++++++......
T Consensus       275 ~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         275 SLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccCccCEEeccCccccccc
Confidence            7777777777776664443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.84  E-value=4e-10  Score=86.27  Aligned_cols=120  Identities=31%  Similarity=0.359  Sum_probs=98.2

Q ss_pred             CCCCccCC-CccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc
Q 039257           53 GAGLEEAP-DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV  130 (210)
Q Consensus        53 ~~~~~~~~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~  130 (210)
                      ++.++++- ++.-.++++.|++++|.+..+.....+++|..|+++ +|.+..+..- -.++.+++.|.+++| .++ +. 
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS-~N~Ls~~~Gw-h~KLGNIKtL~La~N-~iE~LS-  368 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS-GNLLAECVGW-HLKLGNIKTLKLAQN-KIETLS-  368 (490)
T ss_pred             ccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecc-cchhHhhhhh-HhhhcCEeeeehhhh-hHhhhh-
Confidence            33444432 344556899999999999988887889999999999 9988876652 467899999999999 887 64 


Q ss_pred             cccCCCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc
Q 039257          131 GMSKLGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR  177 (210)
Q Consensus       131 ~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~  177 (210)
                      +++.+-+|.+||+++|+|+++.  .+|+++++|+++.+.+| .+..+|.
T Consensus       369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N-Pl~~~vd  416 (490)
T KOG1259|consen  369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN-PLAGSVD  416 (490)
T ss_pred             hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC-Cccccch
Confidence            5788899999999999999765  57899999999999999 7777665

>PLN03150 hypothetical protein; Provisional

Probab=98.82  E-value=8.6e-09  Score=88.76  Aligned_cols=87  Identities=25%  Similarity=0.345  Sum_probs=78.7

Q ss_pred             CcEEecCCcccee--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEe
Q 039257          115 LKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRK  191 (210)
Q Consensus       115 L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l  191 (210)
                      ++.|+++++ .+.  +|..++.+.+|+.|++++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|++|++
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            678999999 888  7999999999999999999988 88999999999999999999544578876 999999999999


Q ss_pred             eccccCCCcchh
Q 039257          192 FITCASSQLKVS  203 (210)
Q Consensus       192 ~~~~~~~~~~~~  203 (210)
                      ++|.+.+.+|..
T Consensus       498 s~N~l~g~iP~~  509 (623)
T PLN03150        498 NGNSLSGRVPAA  509 (623)
T ss_pred             cCCcccccCChH
Confidence            999999888864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.80  E-value=3.4e-09  Score=86.61  Aligned_cols=109  Identities=28%  Similarity=0.398  Sum_probs=90.3

Q ss_pred             cCCCccCCCCccEEEeecccccccCCCCCCC--CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccC
Q 039257           58 EAPDVKEWENVRRLSLMQNQIETLSEVPTCP--HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSK  134 (210)
Q Consensus        58 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~  134 (210)
                      ....+...+.+..+.+.++.+..++......  +|+.|+++ .+.+..++.. ...++.|+.|+++.| .+. +|...+.
T Consensus       108 ~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~  184 (394)
T COG4886         108 NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSN  184 (394)
T ss_pred             CchhhhcccceeEEecCCcccccCccccccchhhccccccc-ccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhh
Confidence            3444445567899999999999998875553  89999999 9999998644 789999999999999 999 9887778


Q ss_pred             CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCC
Q 039257          135 LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  169 (210)
                      ++.|..|++++|.++.+|..+..+..|+.+.+++|
T Consensus       185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence            99999999999999999886655566777777766

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=2.6e-08  Score=88.25  Aligned_cols=120  Identities=22%  Similarity=0.294  Sum_probs=97.4

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeeccc--ccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQ--IETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      .+..-+.....++.-...++++.|-+..+.  +..++.  +..++.|++|+++++..+..+|.+ ++.+-+||+|+++++
T Consensus       527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t  605 (889)
T KOG4658|consen  527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT  605 (889)
T ss_pred             EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence            344455555556655555689999999986  555555  478999999999987788899998 899999999999999


Q ss_pred             ccee-ecccccCCCcCCEEeccCCc-CcccchhhhcCCCCcEEEccCC
Q 039257          124 WNLK-FLVGMSKLGSLQLLDISQNA-IEELPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       124 ~~~~-l~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~  169 (210)
                       .++ +|.+++++..|.+|++..+. +..+|.....+++|++|.+...
T Consensus       606 -~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  606 -GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             -CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence             999 99999999999999999985 4455666677999999998765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.60  E-value=9.2e-09  Score=84.74  Aligned_cols=127  Identities=24%  Similarity=0.332  Sum_probs=109.6

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      .|+.+..+++..+|.-...--|+.|.+++|+++.+|.. ....+|..|+.+ +|.+..+|.. +.++.+|+.|.+.+| .
T Consensus       124 t~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s-~nei~slpsq-l~~l~slr~l~vrRn-~  200 (722)
T KOG0532|consen  124 TFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS-KNEIQSLPSQ-LGYLTSLRDLNVRRN-H  200 (722)
T ss_pred             HHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhh-hhhhhhchHH-hhhHHHHHHHHHhhh-h
Confidence            35566677777787665656799999999999988877 666889999999 9999999998 889999999999999 8


Q ss_pred             ee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257          126 LK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ  178 (210)
Q Consensus       126 ~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~  178 (210)
                      +. +|+.++.+ .|..||++.|++..+|-.+.++..|++|-|.+| .+.+=|.+
T Consensus       201 l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN-PLqSPPAq  252 (722)
T KOG0532|consen  201 LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN-PLQSPPAQ  252 (722)
T ss_pred             hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccC-CCCCChHH
Confidence            88 99888855 488999999999999999999999999999999 78877765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.57  E-value=3.1e-09  Score=89.82  Aligned_cols=142  Identities=25%  Similarity=0.364  Sum_probs=103.9

Q ss_pred             EEecCCCCccCCCccCCCCccEEEeeccccccc---------------------------------CCCCCCCCccEEEc
Q 039257           49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETL---------------------------------SEVPTCPHFVTLFL   95 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l---------------------------------~~~~~~~~L~~L~l   95 (210)
                      +.....+-++.-++..+++||+|.+.++.+..+                                 ........|.+.++
T Consensus        92 ~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~f  171 (1096)
T KOG1859|consen   92 LPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASF  171 (1096)
T ss_pred             cccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhc
Confidence            344455555544566788999999998865321                                 11133456677777


Q ss_pred             ccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCC
Q 039257           96 DFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLN  173 (210)
Q Consensus        96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~  173 (210)
                      + +|.+.....+ +.-++.++.|++++| ++. +. .+..++.|++||+++|.+..+|. +...+ +|..|.+++| .++
T Consensus       172 s-yN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~  245 (1096)
T KOG1859|consen  172 S-YNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALT  245 (1096)
T ss_pred             c-hhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHH
Confidence            7 7777766666 677888999999999 887 65 67788899999999998888773 22233 3888899988 788


Q ss_pred             CCCcccccCCCCCCeEEeeccccCC
Q 039257          174 KIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       174 ~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      .+-.  +.++++|+.||++.|.+.+
T Consensus       246 tL~g--ie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  246 TLRG--IENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             hhhh--HHhhhhhhccchhHhhhhc
Confidence            8876  8889999999999888754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.54  E-value=7e-08  Score=76.37  Aligned_cols=59  Identities=29%  Similarity=0.438  Sum_probs=26.7

Q ss_pred             cCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCC
Q 039257          110 QLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~  169 (210)
                      ..++.|++|++++| .++      ++..+...++|++|++++|.++.     ++..+..+++|++|++++|
T Consensus       162 ~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         162 RANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence            34445555555555 433      11222333455555555554431     2223334455555555555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.51  E-value=9.6e-08  Score=75.59  Aligned_cols=128  Identities=21%  Similarity=0.289  Sum_probs=90.3

Q ss_pred             CCccEEEeecccccc-----cCCC-CCCCCccEEEcccCCCCcc-----cchhHhcCCCCCcEEecCCcccee------e
Q 039257           66 ENVRRLSLMQNQIET-----LSEV-PTCPHFVTLFLDFNGELKM-----IADGFFQLMPSLKVLKMSNCWNLK------F  128 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~------l  128 (210)
                      +.++.+++.+|.+..     +... ..+.+|++|+++ .+.+..     ++.. +..+++|++|++++| .++      +
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l  213 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA-NNGIGDAGIRALAEG-LKANCNLEVLDLNNN-GLTDEGASAL  213 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc-CCCCchHHHHHHHHH-HHhCCCCCEEeccCC-ccChHHHHHH
Confidence            577888888887762     1111 455789999998 666662     2222 456679999999999 775      2


Q ss_pred             cccccCCCcCCEEeccCCcCccc-chhhh-----cCCCCcEEEccCCCCCC-----CCCcccccCCCCCCeEEeeccccC
Q 039257          129 LVGMSKLGSLQLLDISQNAIEEL-PEELK-----LLINLTCLNLRGTGQLN-----KIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       129 ~~~~~~l~~L~~L~l~~~~l~~l-p~~~~-----~l~~L~~L~l~~~~~~~-----~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      +..+..+++|++|++++|.++.. ...+.     ..+.|+.|++++| .++     .+... +..+++|+.+++++|.+.
T Consensus       214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEV-LAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHH-HhcCCCccEEECCCCCCc
Confidence            34566788999999999987732 12221     2478999999999 664     23332 566789999999999984


Q ss_pred             C
Q 039257          198 S  198 (210)
Q Consensus       198 ~  198 (210)
                      .
T Consensus       292 ~  292 (319)
T cd00116         292 E  292 (319)
T ss_pred             H
Confidence            3

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.50  E-value=2.2e-07  Score=51.24  Aligned_cols=39  Identities=44%  Similarity=0.630  Sum_probs=22.3

Q ss_pred             cCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCC
Q 039257          137 SLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIP  176 (210)
Q Consensus       137 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp  176 (210)
                      +|++|++++|+++.+|..++++++|+.|++++| .+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            456666666666666555666666666666666 555554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.47  E-value=3.1e-07  Score=66.62  Aligned_cols=120  Identities=22%  Similarity=0.326  Sum_probs=74.2

Q ss_pred             EEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccC-CCcCCEEeccCC
Q 039257           70 RLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSK-LGSLQLLDISQN  146 (210)
Q Consensus        70 ~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~-l~~L~~L~l~~~  146 (210)
                      .+++.+.++..+... ....+...++++ .+.+..++.  |..++.|.+|.+.+| +++ +.+.+.. +++|+.|.+.+|
T Consensus        23 e~~LR~lkip~ienlg~~~d~~d~iDLt-dNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   23 ELDLRGLKIPVIENLGATLDQFDAIDLT-DNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccchhhccccccccceeccc-ccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCc
Confidence            344444444333222 223456667777 777776665  677777777777777 777 6544543 466777777777


Q ss_pred             cCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEeecc
Q 039257          147 AIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRKFIT  194 (210)
Q Consensus       147 ~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~~~  194 (210)
                      ++.++.  ..+..+++|++|.+-+| .++....   .++..+++|+.||+...
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence            777553  23456677777777777 5554432   34567778888877544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.38  E-value=1.7e-08  Score=68.90  Aligned_cols=108  Identities=17%  Similarity=0.260  Sum_probs=78.5

Q ss_pred             ccEEEeecccccccCCC----CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEe
Q 039257           68 VRRLSLMQNQIETLSEV----PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLD  142 (210)
Q Consensus        68 l~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~  142 (210)
                      +..++++.+++..+++.    .....|...+++ .|.++.+|+.+-.+++..+.+++++| .++ +|..+-.++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls-~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLS-DNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecc-cchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence            34455555655433322    444567777888 88888888875566778888888888 888 887787888888888


Q ss_pred             ccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257          143 ISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ  178 (210)
Q Consensus       143 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~  178 (210)
                      ++.|.+...|..+..|.++..|+..+| ....+|-.
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence            888888877877777888888888777 66677654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.34  E-value=5.9e-07  Score=49.47  Aligned_cols=39  Identities=28%  Similarity=0.474  Sum_probs=28.5

Q ss_pred             CCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccc
Q 039257          113 PSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELP  152 (210)
Q Consensus       113 ~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp  152 (210)
                      ++|++|++++| .++ +|..++++++|++|++++|.++.++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            36778888888 888 7767788888888888888777654

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.33  E-value=4.9e-09  Score=88.63  Aligned_cols=129  Identities=22%  Similarity=0.274  Sum_probs=103.4

Q ss_pred             ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc-cccCCCcC
Q 039257           62 VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV-GMSKLGSL  138 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~-~~~~l~~L  138 (210)
                      ...|.+|...++++|.+..+... .-++.++.|+++ .|.+.++..  +..+++|..||++.| .+. +|. ....+ .|
T Consensus       160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLs-hNk~~~v~~--Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L  234 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLS-HNKFTKVDN--LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KL  234 (1096)
T ss_pred             chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccc-hhhhhhhHH--HHhcccccccccccc-hhccccccchhhh-hh
Confidence            33567888999999998876665 567899999999 888888774  789999999999999 998 773 12233 39


Q ss_pred             CEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccC
Q 039257          139 QLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       139 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~  197 (210)
                      +.|.+++|.++++ .++.+|.+|+.||++.| .+..... ..++.+..|+.|.+.||++.
T Consensus       235 ~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            9999999999888 67889999999999999 6544322 22677888999999999874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.31  E-value=1.2e-07  Score=78.06  Aligned_cols=108  Identities=27%  Similarity=0.438  Sum_probs=79.9

Q ss_pred             ccCCCCccEEEeecccccccCC-CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257           62 VKEWENVRRLSLMQNQIETLSE-VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ  139 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  139 (210)
                      +..+.++..+++.+|.++.+.. ...+++|+.|+++ .+.++.+..  +..+..|+.|++.+| .++ +. .+..+..|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls-~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS-FNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecc-ccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhh
Confidence            4556778888888888888777 5778888888888 888888777  567777888888888 777 54 344577888


Q ss_pred             EEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCC
Q 039257          140 LLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKI  175 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~l  175 (210)
                      .+++++|.+..+... ...+.+++.+.+.+| .+..+
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i  201 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGN-SIREI  201 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCC-chhcc
Confidence            888888887766542 456677777777777 44433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.3e-07  Score=75.81  Aligned_cols=61  Identities=28%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             CCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc-cc-----ccCCCCCCeEEeecccc
Q 039257          135 LGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR-QL-----ISNFSRLRGLRKFITCA  196 (210)
Q Consensus       135 l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~-~~-----~~~l~~L~~L~l~~~~~  196 (210)
                      +..|+.|++++|++..++  ...+.++.|+.|+++.| .+.++.. .+     ...+++|+.|++..|++
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence            345566666666555444  34566666666666666 4444321 00     12456677777766666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.20  E-value=1.7e-07  Score=77.18  Aligned_cols=144  Identities=26%  Similarity=0.299  Sum_probs=106.2

Q ss_pred             EEEecCCCCccCCC-ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           48 FLVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        48 ~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      .+...++.+..+.. ...+.+++.|++++|.|+.+.....+..|+.|++. +|.+..+..  +..+..|+.+++++| .+
T Consensus        99 ~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~-~N~i~~~~~--~~~l~~L~~l~l~~n-~i  174 (414)
T KOG0531|consen   99 ALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS-GNLISDISG--LESLKSLKLLDLSYN-RI  174 (414)
T ss_pred             eeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec-cCcchhccC--CccchhhhcccCCcc-hh
Confidence            44566788888888 78889999999999999998888888889999999 999998887  677999999999999 88


Q ss_pred             e-eccc-ccCCCcCCEEeccCCcCcccch---------------------hhhcCCC--CcEEEccCCCCCCCCCccccc
Q 039257          127 K-FLVG-MSKLGSLQLLDISQNAIEELPE---------------------ELKLLIN--LTCLNLRGTGQLNKIPRQLIS  181 (210)
Q Consensus       127 ~-l~~~-~~~l~~L~~L~l~~~~l~~lp~---------------------~~~~l~~--L~~L~l~~~~~~~~lp~~~~~  181 (210)
                      . +... ...+..++.+.+.+|.+..+..                     ++..+..  |+.+++.+| .+...+.. +.
T Consensus       175 ~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n-~i~~~~~~-~~  252 (414)
T KOG0531|consen  175 VDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGN-RISRSPEG-LE  252 (414)
T ss_pred             hhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccC-cccccccc-cc
Confidence            8 6542 4677788888888887664421                     0111111  556666666 55555332 55


Q ss_pred             CCCCCCeEEeeccccC
Q 039257          182 NFSRLRGLRKFITCAS  197 (210)
Q Consensus       182 ~l~~L~~L~l~~~~~~  197 (210)
                      .++.+..+++..|.+.
T Consensus       253 ~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  253 NLKNLPVLDLSSNRIS  268 (414)
T ss_pred             ccccccccchhhcccc
Confidence            6666777777666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.18  E-value=1.1e-05  Score=65.45  Aligned_cols=57  Identities=16%  Similarity=0.276  Sum_probs=27.1

Q ss_pred             CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      ..++.|++++|.++.+|..  .++|++|.+.+++.++.+|.. +  ..+|+.|.+++|..+.
T Consensus        52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~  108 (426)
T PRK15386         52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEIS  108 (426)
T ss_pred             cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccc
Confidence            4455555555555555421  123555555544444444432 1  1345555555553333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=8.3e-07  Score=71.26  Aligned_cols=84  Identities=23%  Similarity=0.363  Sum_probs=38.5

Q ss_pred             CCCCcEEecCCcccee-ec--ccccCCCcCCEEeccCCcCccc--chh-----hhcCCCCcEEEccCCCCCCCCCc-ccc
Q 039257          112 MPSLKVLKMSNCWNLK-FL--VGMSKLGSLQLLDISQNAIEEL--PEE-----LKLLINLTCLNLRGTGQLNKIPR-QLI  180 (210)
Q Consensus       112 l~~L~~L~l~~~~~~~-l~--~~~~~l~~L~~L~l~~~~l~~l--p~~-----~~~l~~L~~L~l~~~~~~~~lp~-~~~  180 (210)
                      +..|+.|++++| .+- .+  ...+.++.|..|+++.|.+..+  |+.     ....++|++|++..| .+..++. +-+
T Consensus       245 ~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l  322 (505)
T KOG3207|consen  245 LQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHL  322 (505)
T ss_pred             hhHHhhccccCC-cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchh
Confidence            334455555555 333 32  3344555555555555554422  221     234455566666555 4444432 002


Q ss_pred             cCCCCCCeEEeeccccC
Q 039257          181 SNFSRLRGLRKFITCAS  197 (210)
Q Consensus       181 ~~l~~L~~L~l~~~~~~  197 (210)
                      ..+++|+.+.+..|.+.
T Consensus       323 ~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  323 RTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccchhhhhhccccccc
Confidence            33444555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=1.6e-06  Score=75.27  Aligned_cols=128  Identities=20%  Similarity=0.248  Sum_probs=88.1

Q ss_pred             CCccEEEeecccccc--cCC--CCCCCCccEEEcccCCCCccc-chhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257           66 ENVRRLSLMQNQIET--LSE--VPTCPHFVTLFLDFNGELKMI-ADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ  139 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~--l~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  139 (210)
                      .+|+.|++++...-.  .+.  ..-+|.|++|.+. +..+..- -...+.++++|..||++++ +++ + .+++++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS-GRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEec-CceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence            467778877754321  111  1568999999998 5444321 1233678999999999999 988 7 5788999999


Q ss_pred             EEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---c---cccCCCCCCeEEeeccccC
Q 039257          140 LLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---Q---LISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       140 ~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~---~~~~l~~L~~L~l~~~~~~  197 (210)
                      .|.+.+=.+..-.  ..+.+|++|++||++... -...+.   .   .-..+++||.||.+++.+.
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            9988876655332  466899999999999873 333321   0   0235889999999877653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.16  E-value=6.1e-06  Score=60.03  Aligned_cols=100  Identities=23%  Similarity=0.378  Sum_probs=83.2

Q ss_pred             CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec--ccccCCCcCCEEec
Q 039257           67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL--VGMSKLGSLQLLDI  143 (210)
Q Consensus        67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~--~~~~~l~~L~~L~l  143 (210)
                      ....+++++|.+..++....++.|.+|.+. .|.++.+.+..-.-+++|..|.+.+| .+. +.  ..+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEec-CCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence            355789999999888888899999999999 99999999885566788999999999 887 53  44567889999999


Q ss_pred             cCCcCcccc----hhhhcCCCCcEEEccC
Q 039257          144 SQNAIEELP----EELKLLINLTCLNLRG  168 (210)
Q Consensus       144 ~~~~l~~lp----~~~~~l~~L~~L~l~~  168 (210)
                      -+|++++..    --+..+++|+.||..+
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            999888654    2467899999999765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.94  E-value=5.1e-06  Score=72.21  Aligned_cols=109  Identities=21%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             CCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee---ecccccCCCcCCEEeccCCcCcccchhhhcCCCCc
Q 039257           87 CPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK---FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLT  162 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~  162 (210)
                      -.+|+.|+++|...+. ..+.....-+|+|+.|.+.+- .+.   +..-..++++|..||+++++++.+ .++++|++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence            4578899998544333 334443456899999999887 554   334445789999999999999988 7899999999


Q ss_pred             EEEccCCCCCCCCC-cccccCCCCCCeEEeeccccCC
Q 039257          163 CLNLRGTGQLNKIP-RQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       163 ~L~l~~~~~~~~lp-~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      .|.+++= .+.... -..+.+|++|++||+|......
T Consensus       199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             HHhccCC-CCCchhhHHHHhcccCCCeeecccccccc
Confidence            9988765 333322 1127889999999998887643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.87  E-value=1.1e-06  Score=60.15  Aligned_cols=86  Identities=26%  Similarity=0.351  Sum_probs=75.1

Q ss_pred             CccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEec
Q 039257           67 NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDI  143 (210)
Q Consensus        67 ~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l  143 (210)
                      .+...++++|.+..+|..  ..++.+++++++ ++.+.++|.+ +..++.|+.++++.| .+. .|.-+-.+.++.+|+.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence            566778999998887766  566789999999 9999999999 899999999999999 998 8888888999999999


Q ss_pred             cCCcCcccchhh
Q 039257          144 SQNAIEELPEEL  155 (210)
Q Consensus       144 ~~~~l~~lp~~~  155 (210)
                      .+|.+.++|...
T Consensus       131 ~~na~~eid~dl  142 (177)
T KOG4579|consen  131 PENARAEIDVDL  142 (177)
T ss_pred             CCCccccCcHHH
Confidence            999888888654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.45  E-value=0.00027  Score=57.59  Aligned_cols=98  Identities=17%  Similarity=0.365  Sum_probs=65.2

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCC-cCcccchhhhcCCCCc
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQN-AIEELPEELKLLINLT  162 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~  162 (210)
                      ..+.+++.|+++ .+.++.+|.  +  ..+|+.|.++++..++ +|+.+.  .+|++|.+++| .+..+|+.      |+
T Consensus        49 ~~~~~l~~L~Is-~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le  115 (426)
T PRK15386         49 EEARASGRLYIK-DCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VR  115 (426)
T ss_pred             HHhcCCCEEEeC-CCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cc
Confidence            346889999999 778888873  2  3469999999876777 786553  57899999988 67677654      33


Q ss_pred             EEEccCC--CCCCCCCcccccCC------------------CCCCeEEeecccc
Q 039257          163 CLNLRGT--GQLNKIPRQLISNF------------------SRLRGLRKFITCA  196 (210)
Q Consensus       163 ~L~l~~~--~~~~~lp~~~~~~l------------------~~L~~L~l~~~~~  196 (210)
                      .|++..+  ..+..+|.+ +..|                  ++|++|++++|..
T Consensus       116 ~L~L~~n~~~~L~~LPss-Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~  168 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNG-LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN  168 (426)
T ss_pred             eEEeCCCCCcccccCcch-HhheeccccccccccccccccCCcccEEEecCCCc
Confidence            3444332  124455543 3222                  3677888877665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.40  E-value=6.6e-05  Score=58.96  Aligned_cols=128  Identities=16%  Similarity=0.224  Sum_probs=76.7

Q ss_pred             CCccEEEeecccccccCCC------CCCCCccEEEcccCCCCcc----cchhHhcCCCCCcEEecCCcccee------ec
Q 039257           66 ENVRRLSLMQNQIETLSEV------PTCPHFVTLFLDFNGELKM----IADGFFQLMPSLKVLKMSNCWNLK------FL  129 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~------~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~------l~  129 (210)
                      .+||.+....|.+..-+..      ...+.|..+.++ .+.+..    +-...|..+++|++||+.+| .++      +.
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~-qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~La  234 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS-QNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALA  234 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEe-cccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHH
Confidence            4677777777765542211      344667777776 555542    11222667778888888887 665      23


Q ss_pred             ccccCCCcCCEEeccCCcCcc-----cchhh-hcCCCCcEEEccCCCCCCCCCc----ccccCCCCCCeEEeecccc
Q 039257          130 VGMSKLGSLQLLDISQNAIEE-----LPEEL-KLLINLTCLNLRGTGQLNKIPR----QLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       130 ~~~~~l~~L~~L~l~~~~l~~-----lp~~~-~~l~~L~~L~l~~~~~~~~lp~----~~~~~l~~L~~L~l~~~~~  196 (210)
                      +.++.+++|+.|+++.|.++.     +.+.+ ...++|+.|.+.+| .++.--.    ..+...+.|+.|++.+|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            566667778888888776652     11222 23577888888777 4432110    0134567788888888877

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.38  E-value=6.1e-05  Score=59.16  Aligned_cols=128  Identities=23%  Similarity=0.303  Sum_probs=68.5

Q ss_pred             CCccEEEeecccccc--cCCC----CCCCCccEEEcccCCCCcccchhH-------------hcCCCCCcEEecCCccce
Q 039257           66 ENVRRLSLMQNQIET--LSEV----PTCPHFVTLFLDFNGELKMIADGF-------------FQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~--l~~~----~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~  126 (210)
                      ++++.+++++|.+..  ++..    ..+..|+.|.+. ++.+.......             ...-+.||+++.++| ++
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rl  169 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RL  169 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cc
Confidence            478888888886532  2221    446667777777 66554322221             123456777777777 55


Q ss_pred             e-e-----cccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCc----ccccCCCCCCeEEe
Q 039257          127 K-F-----LVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPR----QLISNFSRLRGLRK  191 (210)
Q Consensus       127 ~-l-----~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~~l~~L~~L~l  191 (210)
                      . -     ...+...+.|+.+.+..|.|..     +-..+..+++|+.||+++| .++.-..    ..+..+++|+.+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecc
Confidence            4 2     2334445566666666665441     1123456666666666666 3322111    11344556666666


Q ss_pred             ecccc
Q 039257          192 FITCA  196 (210)
Q Consensus       192 ~~~~~  196 (210)
                      ..|.+
T Consensus       249 ~dcll  253 (382)
T KOG1909|consen  249 GDCLL  253 (382)
T ss_pred             ccccc
Confidence            55554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=7.8e-06  Score=63.01  Aligned_cols=37  Identities=22%  Similarity=0.238  Sum_probs=24.5

Q ss_pred             CCCccEEEcccCCCCcccchh-HhcCCCCCcEEecCCc
Q 039257           87 CPHFVTLFLDFNGELKMIADG-FFQLMPSLKVLKMSNC  123 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~  123 (210)
                      -..|+.+++++++.++..... .+..+..|..|++++|
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc  270 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC  270 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence            356777777766666654432 2567777888888877

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=8.4e-06  Score=62.27  Aligned_cols=99  Identities=24%  Similarity=0.235  Sum_probs=58.4

Q ss_pred             CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccch--hhhcCCCCcE
Q 039257           87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTC  163 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~  163 (210)
                      +.+++.|+.- ++.+.+|.-  ..+|+.|++|.|+-| .|+ +. .+..+.+|+.|.|+.|.|..+.+  -+.++++|+.
T Consensus        18 l~~vkKLNcw-g~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCW-GCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhccc-CCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            3444555555 555555543  456777777777777 666 42 24566677777777776665542  2356777777


Q ss_pred             EEccCCCCCCCCCc----ccccCCCCCCeEE
Q 039257          164 LNLRGTGQLNKIPR----QLISNFSRLRGLR  190 (210)
Q Consensus       164 L~l~~~~~~~~lp~----~~~~~l~~L~~L~  190 (210)
                      |.|..|+....-+.    .++.-+++|++||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777654444333    2244566666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.36  E-value=0.00013  Score=55.13  Aligned_cols=101  Identities=24%  Similarity=0.326  Sum_probs=58.5

Q ss_pred             CCccEEEeecccccccCCCCCCCCccEEEcccCC--CCc-ccchhHhcCCCCCcEEecCCcccee-ec--ccccCCCcCC
Q 039257           66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNG--ELK-MIADGFFQLMPSLKVLKMSNCWNLK-FL--VGMSKLGSLQ  139 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-l~--~~~~~l~~L~  139 (210)
                      ..++.+++.+..++.+.....+++|+.|.++ .+  .+. .++.- ...+++|+++++++| ++. +.  ..+..+.+|.
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELS-DNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhccc-CCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence            3556666666666666666667777777777 55  222 22222 344577777777777 666 32  3344556666


Q ss_pred             EEeccCCcCcccc----hhhhcCCCCcEEEccCC
Q 039257          140 LLDISQNAIEELP----EELKLLINLTCLNLRGT  169 (210)
Q Consensus       140 ~L~l~~~~l~~lp----~~~~~l~~L~~L~l~~~  169 (210)
                      .|++..|..+.+-    ..+.-+++|++|+-...
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            7777776555432    12345566666654443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.27  E-value=0.00012  Score=55.39  Aligned_cols=100  Identities=26%  Similarity=0.333  Sum_probs=67.9

Q ss_pred             CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee----ecccccCCCcCCEEeccCCcCcccc--hhhhcCCC
Q 039257           87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK----FLVGMSKLGSLQLLDISQNAIEELP--EELKLLIN  160 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~  160 (210)
                      +..|..+.+. +..++.+..  |..+++|+.|.++.| ...    ++-....+++|+++++++|.+..+.  +....+.+
T Consensus        42 ~~~le~ls~~-n~gltt~~~--~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVI-NVGLTTLTN--FPKLPKLKKLELSDN-YRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhh-ccceeeccc--CCCcchhhhhcccCC-cccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3445555555 555555544  678899999999988 333    4433445699999999999877432  34467788


Q ss_pred             CcEEEccCCCCCCCCCc---ccccCCCCCCeEEe
Q 039257          161 LTCLNLRGTGQLNKIPR---QLISNFSRLRGLRK  191 (210)
Q Consensus       161 L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l  191 (210)
                      |..|++.+| ..+.+..   .++.-+++|++|+-
T Consensus       118 L~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccC-CccccccHHHHHHHHhhhhccccc
Confidence            999999999 4444432   34566778887764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.09  E-value=0.0038  Score=42.42  Aligned_cols=112  Identities=23%  Similarity=0.360  Sum_probs=39.5

Q ss_pred             CccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccceee-cccccCCCcCCEEec
Q 039257           67 NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKF-LVGMSKLGSLQLLDI  143 (210)
Q Consensus        67 ~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l  143 (210)
                      +++.+.+.. .++.+...  ..+.+++.+.+. .. +..++...|..+++++.+.+..+ ...+ ...+..+.+++.+.+
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~-~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFP-NN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEES-ST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccc-cc-ccccceeeeeccccccccccccc-cccccccccccccccccccc
Confidence            445555443 33333332  444456666655 32 55555554555555666666443 2223 234444555666655


Q ss_pred             cCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCC
Q 039257          144 SQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL  186 (210)
Q Consensus       144 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L  186 (210)
                      ..+ +..++. .+.+. .++.+.+..  .+..++...|.+.++|
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            443 333332 22333 555555443  2344444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=9.4e-05  Score=56.70  Aligned_cols=94  Identities=23%  Similarity=0.348  Sum_probs=69.2

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchh-HhcCCCCCcEEecCCccce
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADG-FFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~  126 (210)
                      -+.|.+.++.++.-...++.++.|.++-|+|..+.....+..|+.|++. .|.+..+..- .+.++++|+.|.+..|+..
T Consensus        23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLR-kN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLR-KNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             hhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHH-hcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            4567777777777777788899999999999888777888899999998 8888876642 2578889999988887433


Q ss_pred             e-ecc-----cccCCCcCCEEe
Q 039257          127 K-FLV-----GMSKLGSLQLLD  142 (210)
Q Consensus       127 ~-l~~-----~~~~l~~L~~L~  142 (210)
                      . -+.     -+.-+++|+.||
T Consensus       102 ~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  102 GEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cccchhHHHHHHHHcccchhcc
Confidence            2 221     234466777665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00018  Score=55.75  Aligned_cols=60  Identities=20%  Similarity=0.158  Sum_probs=32.3

Q ss_pred             cCCCcCCEEeccCC-cCc-ccchhhhcCCCCcEEEccCCCCCCCCCccc---ccCCCCCCeEEeeccc
Q 039257          133 SKLGSLQLLDISQN-AIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQL---ISNFSRLRGLRKFITC  195 (210)
Q Consensus       133 ~~l~~L~~L~l~~~-~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~---~~~l~~L~~L~l~~~~  195 (210)
                      ..+++|..||++.| .++ ..-..+.+++.|++|.++.|..   ++++.   +..+++|.+|+++|+.
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEecccc
Confidence            34566666666665 233 1223445666677777766632   22211   3556667777776554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.82  E-value=0.00054  Score=31.54  Aligned_cols=17  Identities=35%  Similarity=0.698  Sum_probs=7.6

Q ss_pred             CCEEeccCCcCcccchh
Q 039257          138 LQLLDISQNAIEELPEE  154 (210)
Q Consensus       138 L~~L~l~~~~l~~lp~~  154 (210)
                      |++|++++|.++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            34444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.50  E-value=0.012  Score=39.97  Aligned_cols=113  Identities=18%  Similarity=0.306  Sum_probs=64.1

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCC
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINL  161 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L  161 (210)
                      ..+.+|+.+.+. . .++.++...|..+..++.+.+..+  +. ++ ..+.+++.++.+.+.. .+..++. .+..++.+
T Consensus         9 ~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    9 YNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             hCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            456688888886 4 577888877889989999998775  45 54 5677787899999865 5555553 44568899


Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      +.+++..+  +..++...+.+. .|+.+.+..  ....++...|.+
T Consensus        84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~  124 (129)
T PF13306_consen   84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKN  124 (129)
T ss_dssp             CEEEETTT---BEEHTTTTTT--T--EEE-TT--B-SS----GGG-
T ss_pred             cccccCcc--ccEEchhhhcCC-CceEEEECC--CccEECCccccc
Confidence            99998654  667777667776 899888754  335566677754

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.00099  Score=51.74  Aligned_cols=19  Identities=26%  Similarity=0.273  Sum_probs=10.8

Q ss_pred             ccCCCCCCeEEeeccccCC
Q 039257          180 ISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       180 ~~~l~~L~~L~l~~~~~~~  198 (210)
                      +..+++|+.|.+.++++..
T Consensus       245 Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  245 LNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             HcCCchhheeeccCCcccc
Confidence            3455666666666665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.21  E-value=0.0032  Score=28.87  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=13.9

Q ss_pred             CCcEEecCCcccee-ecccccC
Q 039257          114 SLKVLKMSNCWNLK-FLVGMSK  134 (210)
Q Consensus       114 ~L~~L~l~~~~~~~-l~~~~~~  134 (210)
                      +|++|++++| .++ +|+++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            4677778887 777 7766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.0044  Score=48.26  Aligned_cols=83  Identities=17%  Similarity=0.255  Sum_probs=40.9

Q ss_pred             CCCCCccEEEcccCCCCcccch--hHhcCCCCCcEEecCCcccee-ecccc-cCCCcCCEEeccCCcCc--ccchhhhcC
Q 039257           85 PTCPHFVTLFLDFNGELKMIAD--GFFQLMPSLKVLKMSNCWNLK-FLVGM-SKLGSLQLLDISQNAIE--ELPEELKLL  158 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~-l~~~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l  158 (210)
                      ..+..++.+++. +|.+.+...  ..+..+|.|++|+++.| .+. .-+.+ -.+.+|+.|-+.++.+.  ...+....+
T Consensus        68 ~~~~~v~elDL~-~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   68 SSVTDVKELDLT-GNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HHhhhhhhhhcc-cchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            344556666666 555553332  11455666666666666 544 11222 23455666666555433  233334455


Q ss_pred             CCCcEEEccCC
Q 039257          159 INLTCLNLRGT  169 (210)
Q Consensus       159 ~~L~~L~l~~~  169 (210)
                      +.++.|.++.|
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            55555555544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.78  E-value=0.0067  Score=25.90  Aligned_cols=14  Identities=43%  Similarity=0.684  Sum_probs=4.6

Q ss_pred             CCEEeccCCcCccc
Q 039257          138 LQLLDISQNAIEEL  151 (210)
Q Consensus       138 L~~L~l~~~~l~~l  151 (210)
                      |+.|++++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            34444444444333

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.24  E-value=0.05  Score=42.10  Aligned_cols=133  Identities=22%  Similarity=0.230  Sum_probs=84.3

Q ss_pred             ccCCCCccEEEeecccccc-cCCC-----CCCCCccEEEcccCCCCcccchhHhc-------------CCCCCcEEecCC
Q 039257           62 VKEWENVRRLSLMQNQIET-LSEV-----PTCPHFVTLFLDFNGELKMIADGFFQ-------------LMPSLKVLKMSN  122 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~-l~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~-------------~l~~L~~L~l~~  122 (210)
                      ...+++++..++++|.+.. .+..     .....|..|.++ +|.+..+....++             .-+.|++.+..+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            3455788899999997753 2211     566788888898 7777654432222             456788888888


Q ss_pred             cccee-eccc-----ccCCCcCCEEeccCCcCccc--c----hhhhcCCCCcEEEccCCCCCCCCCcc----cccCCCCC
Q 039257          123 CWNLK-FLVG-----MSKLGSLQLLDISQNAIEEL--P----EELKLLINLTCLNLRGTGQLNKIPRQ----LISNFSRL  186 (210)
Q Consensus       123 ~~~~~-l~~~-----~~~l~~L~~L~l~~~~l~~l--p----~~~~~l~~L~~L~l~~~~~~~~lp~~----~~~~l~~L  186 (210)
                      | ++. .|..     +..-.+|+.+.+..|.|..=  .    .+...+.+|+.||++.| ..+...+.    .+..++.|
T Consensus       167 N-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~l  244 (388)
T COG5238         167 N-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             c-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchh
Confidence            8 776 4422     22234678888888876621  0    23356678888888888 55433221    23456677


Q ss_pred             CeEEeeccccC
Q 039257          187 RGLRKFITCAS  197 (210)
Q Consensus       187 ~~L~l~~~~~~  197 (210)
                      +.|.+-.|.++
T Consensus       245 rEL~lnDClls  255 (388)
T COG5238         245 RELRLNDCLLS  255 (388)
T ss_pred             hhccccchhhc
Confidence            88887666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.70  E-value=0.00069  Score=50.80  Aligned_cols=80  Identities=15%  Similarity=0.117  Sum_probs=43.4

Q ss_pred             CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEE
Q 039257           87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLN  165 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~  165 (210)
                      +...+.|+++ .+.+-.+... |+.+..+..|+++.+ .+. +|+.++....+..+++..|..+..|.+.+.++++++++
T Consensus        41 ~kr~tvld~~-s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLS-SNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhh-hhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            3445555555 4444444433 444445555555555 555 55555555555555555555555565555566666555


Q ss_pred             ccCC
Q 039257          166 LRGT  169 (210)
Q Consensus       166 l~~~  169 (210)
                      +-++
T Consensus       118 ~k~~  121 (326)
T KOG0473|consen  118 QKKT  121 (326)
T ss_pred             hccC
Confidence            5555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.05  E-value=0.057  Score=25.59  Aligned_cols=17  Identities=41%  Similarity=0.704  Sum_probs=8.2

Q ss_pred             cCCEEeccCCcCcccch
Q 039257          137 SLQLLDISQNAIEELPE  153 (210)
Q Consensus       137 ~L~~L~l~~~~l~~lp~  153 (210)
                      +|++|++++|.++.+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            44445555554444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.05  E-value=0.057  Score=25.59  Aligned_cols=17  Identities=41%  Similarity=0.704  Sum_probs=8.2

Q ss_pred             cCCEEeccCCcCcccch
Q 039257          137 SLQLLDISQNAIEELPE  153 (210)
Q Consensus       137 ~L~~L~l~~~~l~~lp~  153 (210)
                      +|++|++++|.++.+|.
T Consensus         3 ~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        3 NLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCEEECCCCcCCcCCH
Confidence            44445555554444443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.79  E-value=0.062  Score=25.46  Aligned_cols=19  Identities=37%  Similarity=0.511  Sum_probs=11.3

Q ss_pred             CCCcEEEccCCCCCCCCCcc
Q 039257          159 INLTCLNLRGTGQLNKIPRQ  178 (210)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~  178 (210)
                      ++|+.|++.+| .++.+|..
T Consensus         2 ~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCC-cCCcCCHH
Confidence            45566666666 56666554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.79  E-value=0.062  Score=25.46  Aligned_cols=19  Identities=37%  Similarity=0.511  Sum_probs=11.3

Q ss_pred             CCCcEEEccCCCCCCCCCcc
Q 039257          159 INLTCLNLRGTGQLNKIPRQ  178 (210)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~  178 (210)
                      ++|+.|++.+| .++.+|..
T Consensus         2 ~~L~~L~L~~N-~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNN-QLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCC-cCCcCCHH
Confidence            45566666666 56666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.15  E-value=0.13  Score=42.00  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=15.7

Q ss_pred             CCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          159 INLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       159 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      ..+..+.+.+|+.+.+--.+.+...++|+-+++.+++..
T Consensus       401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            344444444443332222122333444444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.84  E-value=0.021  Score=42.00  Aligned_cols=80  Identities=24%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--eccccc-CCCcCCEEeccCC-cCcccc-hhhhcCCCCcE
Q 039257           89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMS-KLGSLQLLDISQN-AIEELP-EELKLLINLTC  163 (210)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~-~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~  163 (210)
                      .++.++-+ +..+....-.-+.+++.++.|.+.+|..+.  --+.++ -.++|+.|++++| +|++-- ..+..+++|+.
T Consensus       102 ~IeaVDAs-ds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  102 KIEAVDAS-DSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             eEEEEecC-CchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            45667776 665654443336677777888887774444  112233 3467888888887 566321 34566777777


Q ss_pred             EEccCC
Q 039257          164 LNLRGT  169 (210)
Q Consensus       164 L~l~~~  169 (210)
                      |.+.+=
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            766554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.18  E-value=0.057  Score=39.78  Aligned_cols=60  Identities=23%  Similarity=0.186  Sum_probs=26.8

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhc-CCCCCcEEecCCcccee-e-cccccCCCcCCEEecc
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQ-LMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDIS  144 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~  144 (210)
                      ..+..++.|.+..+..+.+..-+.+. ..++|+.|++++|++|+ - -..+..+++|+.|.+.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            44455555555533333322211121 23556666666665555 2 1344445555555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.18  E-value=0.003  Score=47.50  Aligned_cols=86  Identities=13%  Similarity=0.102  Sum_probs=61.2

Q ss_pred             CccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcC
Q 039257           61 DVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSL  138 (210)
Q Consensus        61 ~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L  138 (210)
                      ++..+...+.|+++.+..-.+-.. .-+..+..++++ .+.+..+|.+ +.....++.+++..| ..+ .|.+++..+++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~s-knq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLS-KNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhcc-HhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCc
Confidence            344556677777777765543322 334556677887 7777777877 677777777888888 888 88888888888


Q ss_pred             CEEeccCCcCc
Q 039257          139 QLLDISQNAIE  149 (210)
Q Consensus       139 ~~L~l~~~~l~  149 (210)
                      +++++.++.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88888887654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.32  E-value=0.17  Score=41.39  Aligned_cols=113  Identities=15%  Similarity=0.088  Sum_probs=72.4

Q ss_pred             CCCCCccEEEcccCCCCcccch-hHhcCCCCCcEEecCCcccee-ec-ccc-cCCCcCCEEeccCCcCc---ccchhhhc
Q 039257           85 PTCPHFVTLFLDFNGELKMIAD-GFFQLMPSLKVLKMSNCWNLK-FL-VGM-SKLGSLQLLDISQNAIE---ELPEELKL  157 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-l~-~~~-~~l~~L~~L~l~~~~l~---~lp~~~~~  157 (210)
                      ..+..|+.+..+++.++++.+- ..-.+..+|+++.++++..++ .. ..+ .+.++|+.+++.++...   ++-.--.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            4567778888876666664432 223567888888888885555 21 222 35678888888887432   12222257


Q ss_pred             CCCCcEEEccCCCCCCCC-----CcccccCCCCCCeEEeeccccCC
Q 039257          158 LINLTCLNLRGTGQLNKI-----PRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       158 l~~L~~L~l~~~~~~~~l-----p~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      ++.|+.+.+++|+.+++-     ... -..+..|..+.+.+++...
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~-~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSS-SCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhc-cccccccceeeecCCCCch
Confidence            788999999988665544     221 3456778888888887743

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.07  E-value=0.33  Score=23.13  Aligned_cols=17  Identities=47%  Similarity=0.761  Sum_probs=9.7

Q ss_pred             cCCEEeccCCcCcccch
Q 039257          137 SLQLLDISQNAIEELPE  153 (210)
Q Consensus       137 ~L~~L~l~~~~l~~lp~  153 (210)
                      +|++|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45556666666655553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.82  E-value=1  Score=35.19  Aligned_cols=129  Identities=14%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             CCCccEEEeecccccc-----cCCC-CCCCCccEEEcccCCCCcc----cch------hHhcCCCCCcEEecCCcccee-
Q 039257           65 WENVRRLSLMQNQIET-----LSEV-PTCPHFVTLFLDFNGELKM----IAD------GFFQLMPSLKVLKMSNCWNLK-  127 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~----~~~------~~~~~l~~L~~L~l~~~~~~~-  127 (210)
                      +..+..+++++|.+..     +... ..-.+|+..+++ ......    ++.      ..+-+++.|+..++++| -+. 
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs-d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS-DAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh-hhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCc
Confidence            4578889999997753     1111 334677777777 443332    221      11557899999999999 777 


Q ss_pred             -eccc----ccCCCcCCEEeccCCcCcccch--------------hhhcCCCCcEEEccCCCCCCCCCccc----ccCCC
Q 039257          128 -FLVG----MSKLGSLQLLDISQNAIEELPE--------------ELKLLINLTCLNLRGTGQLNKIPRQL----ISNFS  184 (210)
Q Consensus       128 -l~~~----~~~l~~L~~L~l~~~~l~~lp~--------------~~~~l~~L~~L~l~~~~~~~~lp~~~----~~~l~  184 (210)
                       .|+.    +.....|.+|.+.+|.+-.+..              ....-+.|+......| .+...|...    +..-.
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~  185 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHE  185 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhc
Confidence             5544    3455678999999887664431              1234577888888888 777666531    22335


Q ss_pred             CCCeEEeecccc
Q 039257          185 RLRGLRKFITCA  196 (210)
Q Consensus       185 ~L~~L~l~~~~~  196 (210)
                      .|+.+.+..|-+
T Consensus       186 ~lk~vki~qNgI  197 (388)
T COG5238         186 NLKEVKIQQNGI  197 (388)
T ss_pred             CceeEEeeecCc
Confidence            788888877765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=83.37  E-value=0.77  Score=38.31  Aligned_cols=110  Identities=21%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             CCCccEEEcccCCCCcc--cchhHhcCCCCCcEEecCCc-ccee-ec----ccccCCCcCCEEeccCCc-Ccccc-hhh-
Q 039257           87 CPHFVTLFLDFNGELKM--IADGFFQLMPSLKVLKMSNC-WNLK-FL----VGMSKLGSLQLLDISQNA-IEELP-EEL-  155 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~-l~----~~~~~l~~L~~L~l~~~~-l~~lp-~~~-  155 (210)
                      ++.|+.+.+.++..+..  +.+. ....+.|+.|+++++ ..+. .+    .....+.+|+.|+++++. ++..- ..+ 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            45555555554444443  2222 445666666666551 0111 11    122234556666666654 33211 111 


Q ss_pred             hcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccC
Q 039257          156 KLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~  197 (210)
                      ..+++|+.|.+.+|..+++-.- .+...++.|++|+++++...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            2255666666555532322211 11234555666666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=81.49  E-value=1.3  Score=36.88  Aligned_cols=88  Identities=22%  Similarity=0.263  Sum_probs=40.1

Q ss_pred             CCCCCccEEEccc-CCCCcccc---hhHhcCCCCCcEEecCCcccee-e-ccccc-CCCcCCEEeccCCc-Cc--ccchh
Q 039257           85 PTCPHFVTLFLDF-NGELKMIA---DGFFQLMPSLKVLKMSNCWNLK-F-LVGMS-KLGSLQLLDISQNA-IE--ELPEE  154 (210)
Q Consensus        85 ~~~~~L~~L~l~~-~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~-~l~~L~~L~l~~~~-l~--~lp~~  154 (210)
                      ..+++|+.|++.+ ...+...+   ......++.|+.++++++..++ . -..+. .+++|+.|.+.++. ++  .+-..
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            4456666666652 11111111   1113345566666666662144 1 11222 25566666655553 33  12122


Q ss_pred             hhcCCCCcEEEccCCCCC
Q 039257          155 LKLLINLTCLNLRGTGQL  172 (210)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~  172 (210)
                      ...++.|++|+++.|..+
T Consensus       291 ~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHhcCcccEEeeecCccc
Confidence            345556666666666443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	210
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 3e-12
 Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 17/141 (12%)

Query: 64  EWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
           E+ +VR L L    +  L  +        L L  N  L+ +      L   L+VL+ S+ 
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAAL-RCLEVLQASDN 496

Query: 124 WNLKFLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLIS 181
             L+ + G++ L  LQ L +  N +++      L     L  LNL+G    N +      
Sbjct: 497 -ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG----NSL------ 545

Query: 182 NFSRLRGLRKFITCASSQLKV 202
              +  G+++ +      +  
Sbjct: 546 --CQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 66  ENVRRLSLMQNQIETLSEVPT-CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
             +  L   +  ++  S +    P       D   +  +           ++VL +++  
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK- 451

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFS 184
           +L  L  + +L  +  LD+S N +  LP  L  L  L  L        N +    +   +
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD----NALEN--VDGVA 505

Query: 185 RLRGLRKF 192
            L  L++ 
Sbjct: 506 NLPRLQEL 513

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.9 bits (151), Expect = 6e-12
 Identities = 18/144 (12%), Positives = 49/144 (34%), Gaps = 8/144 (5%)

Query: 49  LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIAD 106
                  ++  P +    + + L L++  + T+        P+   +++  +  L+ +  
Sbjct: 16  FRVTCKDIQRIPSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES 73

Query: 107 GFFQLMPSLKVLKMSNCWNLKFLVGM--SKLGSLQLLDISQNAIEELPEE--LKLLINLT 162
             F  +  +  +++ N  NL ++      +L  L+ L I    ++  P+   +       
Sbjct: 74  HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133

Query: 163 CLNLRGTGQLNKIPRQLISNFSRL 186
            L +     +  IP          
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNE 157

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 76  NQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFL--- 129
             + ++        C   +TL L  NG    +    F     L  + ++    L  +   
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKD 198

Query: 130 --VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNL 166
              G+       LLD+SQ ++  LP + L+ L  L   N 
Sbjct: 199 AFGGVYSG--PSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            +R L L  N IE++        P  + L L    +L+ I++G F+ + +LK L +  C 
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC- 206

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNF 183
           N+K +  ++ L  L+ L++S N   E+       L +L  L +  + Q++ I R      
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGL 265

Query: 184 SRLRGL 189
           + L  L
Sbjct: 266 ASLVEL 271

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.8 bits (145), Expect = 8e-11
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 7/130 (5%)

Query: 66  ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
            N R L+LM+N I+ +         H   L L  N  ++ I  G F  + SL  L++ + 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133

Query: 124 WNLKFL-VGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLI 180
             L  +  G    L  L+ L +  N IE +P      + +L  L+L    +L  I     
Sbjct: 134 -WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 181 SNFSRLRGLR 190
                L+ L 
Sbjct: 193 EGLFNLKYLN 202

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
            N++ L+L    I+ +  +        L +  N     I  G F  + SLK L + N   
Sbjct: 196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-Q 253

Query: 126 LKFLVGM--SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
           +  +       L SL  L+++ N +  LP +    L  L  L+L  
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 7e-12
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            ++ L L  N IE++        P    L L     L  I++G F+ + +L+ L ++ C 
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC- 195

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNF 183
           NL+ +  ++ L  L  LD+S N +  +     + L++L  L +  + Q+  I R    N 
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNL 254

Query: 184 SRLRGLR 190
             L  + 
Sbjct: 255 QSLVEIN 261

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 66  ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
            N R L+L +NQI+ +         H   L L  N  ++ I  G F  + +L  L++ + 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122

Query: 124 WNLKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLI 180
             L  +  G    L  L+ L +  N IE +P      + +L  L+L    +L+ I     
Sbjct: 123 -RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 181 SNFSRLRGLR 190
              S LR L 
Sbjct: 182 EGLSNLRYLN 191

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
            N+R L+L    +  +  +        L L  N  L  I  G FQ +  L+ L M     
Sbjct: 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-Q 242

Query: 126 LKFLVGM--SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
           ++ +       L SL  ++++ N +  LP +    L +L  ++L  
Sbjct: 243 IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 9e-12
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 65  WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMI-ADGFFQLMPSLKVLKMS 121
            +  + + L  N+I  L ++          L L  N E+  +          +L+ L + 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177

Query: 122 NCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLIS 181
               +  + G      L+ LD+S N +  +  E +    +T ++LR   +L  I +  + 
Sbjct: 178 YN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LR 234

Query: 182 NFSRLRGL 189
               L   
Sbjct: 235 FSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 18/126 (14%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 66  ENVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
              +   +  + ++        +  +   L L  N  L  I+         L++L +S+ 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN 68

Query: 124 WNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNF 183
             L   + +  L +L+ LD++ N ++EL        ++  L+      ++++     S  
Sbjct: 69  -VLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVS---CSRG 119

Query: 184 SRLRGL 189
              + +
Sbjct: 120 QGKKNI 125

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 28/156 (17%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVP------------------TCPHFVTLFLDF 97
           L E  D++    +R L L  N ++ L   P                         ++L  
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLAN 129

Query: 98  NGELKMIADGFFQLMPSLKVLKMSNCWN----LKFLVGMSKLGSLQLLDISQNAIEELPE 153
           N ++ M+ D        ++ L +    N    + F    +   +L+ L++  N I ++  
Sbjct: 130 N-KITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 154 ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
           ++ +   L  L+L    +L  +  +   + + +  +
Sbjct: 187 QV-VFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWI 219

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  L+L  N +    ++ +     TL L+ N  ++ +  G     PS++ L  +N  N+
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLVG-----PSIETLHAANN-NI 111

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIP-RQLISNFS 184
             +   S+    + + ++ N I  L + +      +  L+L+   +++ +   +L ++  
Sbjct: 112 SRV-SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD 169

Query: 185 RLRGL 189
            L  L
Sbjct: 170 TLEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 108 FFQLMPSLKVLKMSNCWNLKFLVGM-SKLGSLQLLDISQNAIEELP-EELKLLINLTCLN 165
             Q     K+ K+++    + L  +     +++ LD+S N + ++   +L     L  LN
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 166 LRGTGQLNKIPRQLISNFSRLRGLRK 191
           L      N +      +   L  LR 
Sbjct: 65  LSS----NVL--YETLDLESLSTLRT 84

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 14/132 (10%)

Query: 65  WENVRRLSLMQNQIETLS-EVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN- 122
           +  ++ L L  N++  +  E  +      + L  N +L +I         +L+   +   
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHFDLRGN 247

Query: 123 ---CWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
              C  L+         + ++  +++  +++L  + +    +  L   G      +P   
Sbjct: 248 GFHCGTLRDF----FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

Query: 180 ISNFSRLRGLRK 191
                RL  L  
Sbjct: 304 ---ADRLIALGH 312

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.4 bits (152), Expect = 9e-12
 Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  L L  N +   + +   P  V + L +N EL+ I    F  M  L+ L +SN   L
Sbjct: 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RL 284

Query: 127 KFLVGM-SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR 185
             L      + +L++LD+S N +  +         L  L L      N I    +S    
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH----NSIVTLKLSTHHT 340

Query: 186 LRGLR 190
           L+ L 
Sbjct: 341 LKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N + ++   + +  L    + +      L L+   +++ I    F    +++ L M    
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN- 103

Query: 125 NLKFLVGM--SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLIS 181
            +++L       +  L +L + +N +  LP  +      LT L++     L +I      
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ 162

Query: 182 NFSRLRGL 189
             + L+ L
Sbjct: 163 ATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 25/142 (17%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC- 123
            +  L L +N + +L        P   TL +  N  L+ I D  FQ   SL+ L++S+  
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR 176

Query: 124 ---------WNLKFL-------VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLR 167
                     +L            ++   +++ LD S N+I  +     + + LT L L+
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQ 234

Query: 168 GTGQLNKIPRQLISNFSRLRGL 189
               L       + N+  L  +
Sbjct: 235 HN-NLTDTA--WLLNYPGLVEV 253

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMP 113
           L +   +  +  +  + L  N++E +             L++  N  L  + + + Q +P
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL-NLYGQPIP 295

Query: 114 SLKVLKMSNCWNLKFL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
           +LKVL +S+  +L  +     +   L+ L +  N+I  L         L  L L  
Sbjct: 296 TLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLKLS--THHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 112 MPSLKVLKMSNCWNLKFLVG--MSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
           + + K++   N   ++ L    +     ++LL+++   IEE+          +  L +  
Sbjct: 44  LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 169 TGQLNKIPRQLISNFSRLRGL 189
              +  +P  +  N   L  L
Sbjct: 103 N-AIRYLPPHVFQNVPLLTVL 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 2e-11
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 44  EKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM 103
            +          + +A    E  ++ ++    + I+++  +   P+   LFL+ N +L  
Sbjct: 21  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTD 79

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC 163
           I       + +L  L +     +K L  +  L  L+ L +  N I ++   L  L  L  
Sbjct: 80  IKP--LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLES 135

Query: 164 LNLRGTGQLNKIPRQLISNFSRLRGLRK 191
           L L      NKI    I+  SRL  L  
Sbjct: 136 LYLGN----NKITD--ITVLSRLTKLDT 157

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
           K+  L     G+ +   +     +  L L  N+I  ++ +       TL L+ N ++  I
Sbjct: 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN-QISDI 168

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAI-EELPEELKLLINLTC 163
                  +  L+ L +S   ++  L  ++ L +L +L++       +       L+    
Sbjct: 169 V--PLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225

Query: 164 LNL 166
           +  
Sbjct: 226 VKN 228

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 10/138 (7%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
             + L+L  N IE +S +    +   L L  N  +K I +    +  +L+ L +S    +
Sbjct: 49  ACKHLALSTNNIEKISSLSGMENLRILSLGRNL-IKKI-ENLDAVADTLEELWISYN-QI 105

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLISNFS 184
             L G+ KL +L++L +S N I    E  +L  L  L  L L G    N +      N +
Sbjct: 106 ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG----NPLYNDYKEN-N 160

Query: 185 RLRGLRKFITCASSQLKV 202
                R  +      LK 
Sbjct: 161 ATSEYRIEVVKRLPNLKK 178

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 68  VRRLSLMQNQIETLSE----VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
           + + + +++ I    E    V T    V L        KM  D     + + K L +S  
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKM--DATLSTLKACKHLALSTN 58

Query: 124 WNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNF 183
            N++ +  +S + +L++L + +N I+++     +   L  L +      N+I    +S  
Sbjct: 59  -NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY----NQIAS--LSGI 111

Query: 184 SRLRGLRKF 192
            +L  LR  
Sbjct: 112 EKLVNLRVL 120

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 7/125 (5%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  L L  N +   + +   P  V + L +N EL+ I    F  M  L+ L +SN   L
Sbjct: 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RL 290

Query: 127 KFL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR 185
             L +    + +L++LD+S N +  +         L  L L      N I    +S    
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH----NSIVTLKLSTHHT 346

Query: 186 LRGLR 190
           L+ L 
Sbjct: 347 LKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N + ++   + +  L    + +      L L+   +++ I    F    +++ L M    
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN- 109

Query: 125 NLKFLVGM--SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLIS 181
            +++L       +  L +L + +N +  LP  +      LT L++     L +I      
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQ 168

Query: 182 NFSRLRGL 189
             + L+ L
Sbjct: 169 ATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
            ++   ++  N + TL           L    N  + ++          L +LK+ +  N
Sbjct: 192 PSLFHANVSYNLLSTL---AIPIAVEELDASHN-SINVVRGPVNV---ELTILKLQHN-N 243

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFS 184
           L     +     L  +D+S N +E++       +  L  L +    +L  +         
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL-YGQPIP 301

Query: 185 RLRGL 189
            L+ L
Sbjct: 302 TLKVL 306

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMP 113
           L +   +  +  +  + L  N++E +   P         L++  N  L  + + + Q +P
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL-NLYGQPIP 301

Query: 114 SLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
           +LKVL +S+   L       +   L+ L +  N+I  L         L  L L  
Sbjct: 302 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS--THHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 25/142 (17%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC- 123
            +  L L +N + +L        P   TL +  N  L+ I D  FQ   SL+ L++S+  
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR 182

Query: 124 ---------WNLKFLV-------GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLR 167
                     +L            ++   +++ LD S N+I  +     + + LT L L+
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQ 240

Query: 168 GTGQLNKIPRQLISNFSRLRGL 189
               L       + N+  L  +
Sbjct: 241 HN-NLTDTA--WLLNYPGLVEV 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 112 MPSLKVLKMSNCWNLKFLVG--MSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
           + + K++   N   ++ L    +     ++LL+++   IEE+          +  L +  
Sbjct: 50  LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 169 TGQLNKIPRQLISNFSRLRGLR 190
              +  +P  +  N   L  L 
Sbjct: 109 N-AIRYLPPHVFQNVPLLTVLV 129

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 66  ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
           +  + + L  N+I  L ++          L L  N    +          +L+ L +   
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 124 WNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNF 183
             +  + G      L+ LD+S N +  +  E +    +T ++LR     NK+   +    
Sbjct: 180 -FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN----NKL-VLIEKAL 233

Query: 184 SRLRGLRKF------ITCASSQLKVSTWENLLS 210
              + L  F        C + +   S  + + +
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 5e-08
 Identities = 19/126 (15%), Positives = 48/126 (38%), Gaps = 12/126 (9%)

Query: 67  NVRRLSLMQNQIETL--SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
             +   +  + ++    S   +  +   L L  N  L  I+         L++L +S+  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN- 68

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFS 184
            L   + +  L +L+ LD++ N ++EL        ++  L+      ++++     S   
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVS---CSRGQ 120

Query: 185 RLRGLR 190
             + + 
Sbjct: 121 GKKNIY 126

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 32/158 (20%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNG---------------- 99
           L E  D++    +R L L  N ++ L      P   TL    N                 
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 100 ----ELKMIADGFFQLMPSLKVLKMSNCWN----LKFLVGMSKLGSLQLLDISQNAIEEL 151
               ++ M+ D        ++ L +    N    + F    +   +L+ L++  N I ++
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 152 PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
             ++ +   L  L+L    +L  +  +   + + +  +
Sbjct: 185 KGQV-VFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWI 219

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 9/128 (7%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
           + +  L+L  N I  +          TL L  N +L  +   F      +  + + N   
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSA-AGVTWISLRNN-K 225

Query: 126 LKFL-VGMSKLGSLQLLDISQNAIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
           L  +   +    +L+  D+  N      L +       +  +  +    + K+  Q    
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ---TVKKLTGQNEEE 282

Query: 183 FSRLRGLR 190
            +      
Sbjct: 283 CTVPTLGH 290

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 23/125 (18%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  L+L  N +    ++ +     TL L+ N  ++ +  G     PS++ L  +N  N 
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLVG-----PSIETLHAAN--NN 110

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIP-RQLISNFS 184
              V  S+    + + ++ N I  L + +      +  L+L+   +++ +   +L ++  
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD 169

Query: 185 RLRGL 189
            L  L
Sbjct: 170 TLEHL 174

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 16/128 (12%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 65  WENVRRLSLMQNQIETLS-EVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS-N 122
           +  ++ L L  N++  +  E  +      + L  N +L +I         +L+   +  N
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-QNLEHFDLRGN 247

Query: 123 CWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
            ++   L       + ++  +++  +++L  + +    +  L   G      +P      
Sbjct: 248 GFHCGTL-RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 183 FSRLRGLR 190
              L+   
Sbjct: 307 LIALKRKE 314

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 7e-11
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 6/129 (4%)

Query: 65  WENVRRLSLMQNQIETLSEVPTCPHFVT----LFLDFNGELKMIADGFFQLMPSLKVLKM 120
              +  L L  NQ++ LS++      +     L +  N        G      SL  L M
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
           S+   L   +       +++LD+  N I+ +P+++  L  L  LN+    QL  +P  + 
Sbjct: 407 SSN-ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIF 464

Query: 181 SNFSRLRGL 189
              + L+ +
Sbjct: 465 DRLTSLQKI 473

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 15/148 (10%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC- 123
               L++ QN I  L    + +      L +  N  ++ +    F+    L+ L +S+  
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80

Query: 124 -WNLKFLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLI 180
              +          +L+ LD+S NA + LP   E   +  L  L L        + +  +
Sbjct: 81  LVKISC----HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST----THLEKSSV 132

Query: 181 SNFSRLRGLRKFITCASSQLKVSTWENL 208
              + L   +  +    +  +    E L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGL 160

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 14/153 (9%)

Query: 67  NVRRLSLMQNQIETLSEVPTCP-----HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS 121
           +++ LS+ Q   +      +       +        +G  +M+       +     L  S
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG-TRMVHMLCPSKISPFLHLDFS 332

Query: 122 NCWNLKFLVGM-SKLGSLQLLDISQNAIEELPEELKL---LINLTCLNLRGTGQLNKIPR 177
           N      +      L  L+ L +  N ++EL +  ++   + +L  L++     ++   +
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEK 391

Query: 178 QLISNFSRLRGLRKFITCASSQLKVSTWENLLS 210
           +   + S  + L      +S+ L  + +  L  
Sbjct: 392 K--GDCSWTKSLLSLN-MSSNILTDTIFRCLPP 421

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFV---TLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
               L L  N +  L    T        +L L  N  L  I+   F  +P+L+ L +S+ 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN 98

Query: 124 WNLKFL-VGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLI 180
            +L  L   + S L +L++L +  N I  +     + +  L  L L    Q+++ P +LI
Sbjct: 99  -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELI 156

Query: 181 SNFSRLRGLRK 191
            + ++L  L  
Sbjct: 157 KDGNKLPKLML 167

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N+  L L  N +  +S       P+   L L  N  L  + +  F  + +L+VL + N  
Sbjct: 65  NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN- 122

Query: 125 NLKFLVG--MSKLGSLQLLDISQNAIEELPEE----LKLLINLTCLNLRGTGQLNKIPRQ 178
           ++  +       +  LQ L +SQN I   P E       L  L  L+L    +L K+P  
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT 181

Query: 179 LISNFSRLR 187
            +       
Sbjct: 182 DLQKLPAWV 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 81  LSEVPTC--PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFL-VGM-SKLG 136
           L  VP     +   L L  N   ++ A+     + +L  L +S+  +L F+       + 
Sbjct: 30  LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVP 88

Query: 137 SLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRK 191
           +L+ LD+S N +  L E     L  L  L L     +  + R     F  +  L+K
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNA---FEDMAQLQK 140

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 8e-11
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 8/140 (5%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N   L  +  ++  + +           + +  N  L++I    F  +P L  +++    
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEELKL-LINLTCLNLRGTGQLNKIPRQLIS 181
           NL ++       L +LQ L IS   I+ LP+  K+  +    L+++    ++ I R    
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-- 148

Query: 182 NFSRLRGLRKFITCASSQLK 201
            F  L      +    + ++
Sbjct: 149 -FVGLSFESVILWLNKNGIQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 33/129 (25%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query: 67  NVRRLSLMQN-QIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
               L +  N  I T+     V      V L+L+ NG ++ I +  F      ++    N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDN 187

Query: 123 CWNLKFLVG--MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
             NL+ L            +LDIS+  I  LP     L NL  L  R T  L K+P   +
Sbjct: 188 -NNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT--L 242

Query: 181 SNFSRLRGL 189
                L   
Sbjct: 243 EKLVALMEA 251

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 67  NVRRLSLMQ-NQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
            +  + + + N +  ++       P+   L +   G +K + D          +L + + 
Sbjct: 80  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDN 138

Query: 124 WNLKFL-----VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ 178
            N+  +     VG+S      +L +++N I+E+         L  LNL     L ++P  
Sbjct: 139 INIHTIERNSFVGLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 179 LISNFSRLRGLR 190
           +    S    L 
Sbjct: 197 VFHGASGPVILD 208

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 9e-11
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTL-FLDFNG-ELKMIADGFFQLMPSLKVLKMSNCW 124
            +  L    + ++ +SE         L +LD +    ++  +G F  + SL+VLKM+   
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN- 455

Query: 125 NLKFLVGM---SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLI 180
           + +        ++L +L  LD+SQ  +E+L       L +L  LN+    QL  +P  + 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIF 514

Query: 181 SNFSRLR 187
              + L+
Sbjct: 515 DRLTSLQ 521

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 67  NVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
           +++ L L  N + T+ S          L    +   +M     F  + +L  L +S+   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 126 LKFLVGM-SKLGSLQLLDISQNAIEE--LPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
                G+ + L SL++L ++ N+ +E  LP+    L NLT L+L    QL ++     ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNS 492

Query: 183 FSRLRGL 189
            S L+ L
Sbjct: 493 LSSLQVL 499

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 10/131 (7%)

Query: 66  ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
            + + L L  N +  L      + P    L L    E++ I DG +Q +  L  L ++  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 86

Query: 124 WNLKFLVGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPR-QLI 180
                 +G  S L SLQ L   +  +  L    +  L  L  LN+      N I   +L 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH----NLIQSFKLP 142

Query: 181 SNFSRLRGLRK 191
             FS L  L  
Sbjct: 143 EYFSNLTNLEH 153

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           ++++L  ++  + +L   P         L +  N         +F  + +L+ L +S+  
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN- 159

Query: 125 NLKFLVG--MSKLGSLQL----LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ 178
            ++ +    +  L  + L    LD+S N +  +       I L  L LR       + + 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 179 LISNFSRLRGLR 190
            I   + L   R
Sbjct: 220 CIQGLAGLEVHR 231

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 10/138 (7%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           +E   D       + L L+  +      +        L    N   K         +PSL
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSN---KGGNAFSEVDLPSL 349

Query: 116 KVLKMS-NCWNLKFLVGMS--KLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQL 172
           + L +S N  + K     S     SL+ LD+S N +  +      L  L  L+ + +  L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NL 408

Query: 173 NKIPRQLISNFSRLRGLR 190
            ++     S F  LR L 
Sbjct: 409 KQMSEF--SVFLSLRNLI 424

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 81  LSEVPTC--PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMS--KLG 136
             ++P         L L FN  L+ +    F   P L+VL +S C  ++ +   +   L 
Sbjct: 19  FYKIPDNLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS 76

Query: 137 SLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
            L  L ++ N I+ L       L +L  L    T  L  +    I +   L+ L
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKEL 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 9e-11
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           ++  L L  N + +LS            L L  N    +     F  + +L+ L++ N  
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 125 NLKFL--VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLIS 181
               +  +  + L SL  L+I   ++     + LK + ++  L L  + +   +      
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFAD 193

Query: 182 NFSRLRGLR 190
             S +R L 
Sbjct: 194 ILSSVRYLE 202

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTL-FLDFNG----ELKMIADGFFQLMPSLKVLKMS 121
            V+R+++  +++  +       H  +L FLD +     E  +         PSL+ L +S
Sbjct: 311 KVKRITVENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 122 NC--WNLKFLVGM-SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ 178
                +++    +   L +L  LDIS+N    +P+  +    +  LNL  T  +  +   
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTC 428

Query: 179 LISNFSRL 186
           +      L
Sbjct: 429 IPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 66  ENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
             ++ L L  N+I  +    +  C +   L L  +  +  I    F  + SL+ L +S+ 
Sbjct: 26  AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN 84

Query: 124 WNLKFL--VGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQL 179
            +L  L       L SL+ L++  N  + L        L NL  L +      ++I R  
Sbjct: 85  -HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 180 ISNFSRLRGL 189
            +  + L  L
Sbjct: 144 FAGLTSLNEL 153

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 28/149 (18%)

Query: 65  WENVRRLSLMQNQIETLSEVP----TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
           W +++ L L QN + ++ +      T  +  +L +  N     + D        ++ L +
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWP-EKMRFLNL 417

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELK-------------------LLINL 161
           S+   ++ +       +L++LD+S N ++     L                    L   L
Sbjct: 418 SST-GIRVV-KTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVL 475

Query: 162 TCLNLRGTGQLNKIPRQLISNFSRLRGLR 190
             + +    QL  +P  +    + L+ + 
Sbjct: 476 LVMKISRN-QLKSVPDGIFDRLTSLQKIW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 81  LSEVPT--CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVG--MSKLG 136
            + +P+       +L L FN ++  I  G  +   +L+VL + +   +  + G     LG
Sbjct: 17  FTSIPSGLTAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLG 74

Query: 137 SLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIP-RQLISNFSRLRGLR 190
           SL+ LD+S N +  L       L +L  LNL G      +    L  N + L+ LR
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 13/117 (11%)

Query: 56  LEEAPDVKEW-ENVRRLSLMQNQIETLSEVPTC--PHFVTLFLDFNGELKMIADGFFQLM 112
               PD  +W E +R L+L       +  V TC       L +  N       D F   +
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTG---IRVVKTCIPQTLEVLDVSNNN-----LDSFSLFL 450

Query: 113 PSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
           P L+ L +S    LK L   S    L ++ IS+N ++ +P+     L +L  + L  
Sbjct: 451 PRLQELYISRN-KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 18/153 (11%)

Query: 60  PDVKEWENVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
                  +++ +++    +  L   +       TL L  N  L+ +      L   L+ L
Sbjct: 98  DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASL-NRLREL 155

Query: 119 KMSNCWNLKFL----------VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
            +  C  L  L               L +LQ L +    I  LP  +  L NL  L +R 
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN 215

Query: 169 TGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201
           +  L+ +          L  L +      + L+
Sbjct: 216 S-PLSALG----PAIHHLPKLEELDLRGCTALR 243

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPS 114
            + + + +   N++ L L    I +L + +    +  +L +  +  L  +      L P 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHL-PK 230

Query: 115 LKVLKMSNCWNLKFL-VGMSKLGSLQLLDIS-QNAIEELPEELKLLINLTCLNLRGTGQL 172
           L+ L +  C  L+           L+ L +   + +  LP ++  L  L  L+LRG   L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 173 NKIPRQLISNFSRLRGL 189
           +++P  LI+       +
Sbjct: 291 SRLP-SLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 67  NVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQL--------MPSLKV 117
            +  L+L +N +  L + + +      L +    EL  + +             + +L+ 
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 118 LKMSNCWNLKFL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIP 176
           L++     ++ L   ++ L +L+ L I  + +  L   +  L  L  L+LRG   L   P
Sbjct: 188 LRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 177 RQLISNFSRLRGL 189
                  + L+ L
Sbjct: 247 PI-FGGRAPLKRL 258

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 60  PDVKEWENVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
             +   +N++ L +  + +  L   +   P    L L     L+     F      LK L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR-APLKRL 258

Query: 119 KMSNCWNLKFL-VGMSKLGSLQLLDISQNA-IEELPEELKLLINLTCLNLRGTGQLNKIP 176
            + +C NL  L + + +L  L+ LD+     +  LP  +  L     + +    Q     
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

Query: 177 RQLIS 181
            + ++
Sbjct: 319 HRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 67  NVRRLSLMQNQIETLSEVP------TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
           N     +       L          T P  V L L     L    D  F+L   L+ + +
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRL-SHLQHMTI 111

Query: 121 SNCWNLKFL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
                L  L   M +   L+ L +++N +  LP  +  L  L  L++R   +L ++P  L
Sbjct: 112 DAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            V+ L L  N+I  +S      C +   L L  N  +  I +  F  + SL+ L +S   
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN- 110

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEE--LKLLINLTCLNLRGTGQLNKIPRQLI 180
            L  L       L SL  L++  N  + L E      L  L  L +       KI R+  
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 181 SNFSRLRGLR 190
           +  + L  L 
Sbjct: 171 AGLTFLEELE 180

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 6e-09
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIAD-GFFQLMPSLKVLKMSNC 123
           ++  L L  N +  LS            L L  N   K + +   F  +  L++L++ N 
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM 159

Query: 124 WNLKFL-VGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLI 180
                +     + L  L+ L+I  + ++    + LK + N++ L L    Q   +    +
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFV 218

Query: 181 SNFSRLRGLR 190
              S +  L 
Sbjct: 219 DVTSSVECLE 228

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 16/135 (11%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            +  L +  + +++     + +  +   L L    +  ++ + F  +  S++ L++ +  
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTD 233

Query: 125 ----NLKFLV-----GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
               +   L       + K  + + + I+  ++ ++ + L  +  L  L      QL  +
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSV 292

Query: 176 PRQLISNFSRLRGLR 190
           P  +    + L+ + 
Sbjct: 293 PDGIFDRLTSLQKIW 307

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 11/148 (7%)

Query: 44  EKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM 103
            +          + +A    E  ++ ++    + I+++  +   P+   LFL+ N +L  
Sbjct: 24  AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTD 82

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC 163
           I       + +L  L +     +K L  +  L  L+ L +  N I ++   L  L  L  
Sbjct: 83  IKP--LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLES 138

Query: 164 LNLRGTGQLNKIPRQLISNFSRLRGLRK 191
           L L      NKI    I+  SRL  L  
Sbjct: 139 LYLGN----NKITD--ITVLSRLTKLDT 160

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 63  KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
             +    + +L +  +              +  + +  +K +     Q +P++  L ++ 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD-IKSVQ--GIQYLPNVTKLFLNG 77

Query: 123 CWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
              L  +  ++ L +L  L + +N +++L   LK L  L  L+L      N I    I+ 
Sbjct: 78  N-KLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEH----NGI--SDING 129

Query: 183 FSRLRGLRK 191
              L  L  
Sbjct: 130 LVHLPQLES 138

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 28/146 (19%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
           K+  L     G+ +   +     +  L L  N+I  ++                      
Sbjct: 113 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT---------------------- 150

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCL 164
                  +  L  L + +   +  +V ++ L  LQ L +S+N I +L   L  L NL  L
Sbjct: 151 ---VLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVL 205

Query: 165 NLRGTGQLNKIPRQLISNFSRLRGLR 190
            L    +    P    SN      ++
Sbjct: 206 ELFSQ-ECLNKPINHQSNLVVPNTVK 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 11/128 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           ++  ++   NQ+E L E+   P    ++ D N  LK +      L  SL+ +   N   L
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLKKL----PDLPLSLESIVAGNN-IL 227

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
           + L  +  L  L  +    N ++ LP+    L  L   +      L  +P  L  + + L
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN----YLTDLPE-LPQSLTFL 282

Query: 187 RGLRKFIT 194
                  +
Sbjct: 283 DVSENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query: 55  GLEEAPDVKEWENVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMP 113
           GL   P+     ++  L    N +  L     +    +    +              L P
Sbjct: 82  GLSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA--------LSDLPP 131

Query: 114 SLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLN 173
            L+ L +SN   L+ L  +     L+++D+  N++++LP+      +L  +      QL 
Sbjct: 132 LLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNN-QLE 186

Query: 174 KIPRQLISNFSRLRGLRKF 192
           ++P         L  L   
Sbjct: 187 ELP-----ELQNLPFLTAI 200

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 15/122 (12%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
           +++  L + +N    LSE+P  P+   L    N E++ +      L PSL+ L +SN   
Sbjct: 277 QSLTFLDVSENIFSGLSELP--PNLYYLNASSN-EIRSL----CDLPPSLEELNVSNN-K 328

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR 185
           L  L   +    L+ L  S N + E+PE  +   NL  L++     L + P  +  +   
Sbjct: 329 LIELP--ALPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYN-PLREFP-DIPESVED 381

Query: 186 LR 187
           LR
Sbjct: 382 LR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 17/124 (13%)

Query: 71  LSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQL------------MPSLKV 117
                + +  +  E          +  ++   +    G  +                   
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 118 LKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177
           L+++N   L  L        L+ L  S N++ ELPE  + L +L   N      L+ +P 
Sbjct: 76  LELNNL-GLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDLPP 131

Query: 178 QLIS 181
            L  
Sbjct: 132 LLEY 135

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           ++  +    N +E L E+   P   T++ D N  LK + D    L PSL+ L + +   L
Sbjct: 216 SLESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLPD----LPPSLEALNVRDN-YL 269

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLIS 181
             L       SL  LD+S+N    L E      NL  LN     ++  +     S
Sbjct: 270 TDL--PELPQSLTFLDVSENIFSGLSELPP---NLYYLNASSN-EIRSLCDLPPS 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
            N+  L+   N+I +L ++P  P    L +  N +L  +      L P L+ L  S   +
Sbjct: 297 PNLYYLNASSNEIRSLCDLP--PSLEELNVSNN-KLIEL----PALPPRLERLIASFN-H 348

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR 185
           L  +       +L+ L +  N + E P+  + + +L   +      L ++P  L  N  +
Sbjct: 349 LAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS-----HLAEVPE-LPQNLKQ 400

Query: 186 L 186
           L
Sbjct: 401 L 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 63  KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
                + RL    N +  + E+P   +   L +++N  L+   D    +  S++ L+M++
Sbjct: 334 ALPPRLERLIASFNHLAEVPELPQ--NLKQLHVEYN-PLREFPD----IPESVEDLRMNS 386

Query: 123 CWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
             +L  +       +L+ L +  N + E P+  + + +L   + R      +   +    
Sbjct: 387 --HLAEVP--ELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVV-DPYEFAHETTDK 441

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 67  NVRRLSLMQNQIETLSEVPT----CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
           +++RL L +  ++ +   P+      +   L L  N  +  I D   + +  L++L + +
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQH 513

Query: 123 ---------CWNLKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQL 172
                          +  +  L  L +L++  N  +E+P E  K L  L  ++L     L
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NL 572

Query: 173 NKIPRQLISNFSRLRGL 189
           N +P  + +N   L+ L
Sbjct: 573 NTLPASVFNNQVSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 9/128 (7%)

Query: 69  RRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
             L+L +N+I  +         H   L L  N   + +    ++ + ++  + +S     
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KY 442

Query: 127 KFLVGMS--KLGSLQLLDISQNAIEEL---PEELKLLINLTCLNLRGTGQLNKIPRQLIS 181
             L   S   + SLQ L + + A++ +   P   + L NLT L+L     +  I   ++ 
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLE 501

Query: 182 NFSRLRGL 189
              +L  L
Sbjct: 502 GLEKLEIL 509

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            ++ L+L  N++  LS+     C +   L L  N  ++ I +  F    +L  L +S+  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN- 131

Query: 125 NLKFLVGMS--KLGSLQLLDISQNAIEELPEE---LKLLINLTCLNLRGTGQLNKIPRQL 179
            L      +  +L +LQ L +S N I+ L  E   +    +L  L L    Q+ +     
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGC 190

Query: 180 ISNFSRLRGL 189
                RL GL
Sbjct: 191 FHAIGRLFGL 200

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 19/141 (13%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFN--------GELKMIADGFFQLMPSLK 116
            +    L  N I+ L         +   L L  +          L  I D  FQ +  L+
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 117 VLKMSNCWNLKFLVG--MSKLGSLQLLDISQNAIEELPEELKLLINLTC-----LNLRGT 169
            L M +  ++  +     + L +L+ L +S +         +  ++L       LNL   
Sbjct: 333 HLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 170 GQLNKIPRQLISNFSRLRGLR 190
            +++KI     S    L  L 
Sbjct: 392 -KISKIESDAFSWLGHLEVLD 411

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 11/128 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTC--PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           +         +   L++VP     +   L L  N +L+ +    F     L  L +    
Sbjct: 5   SHEVADCSHLK---LTQVPDDLPTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFN- 59

Query: 125 NLKFLV--GMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLIS 181
            +  L      KL  L++L++  N + +L ++      NLT L+L     + KI      
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFV 118

Query: 182 NFSRLRGL 189
               L  L
Sbjct: 119 KQKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 66  ENVRRLSLMQNQIETLSEVPT----------CPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           E +  L L  N +  L +               H   L L+ NG    I    F+ +  L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFEL 562

Query: 116 KVLKMSNCWNLKFLVG--MSKLGSLQLLDISQNAIEELPEEL--KLLINLTCLNLRG 168
           K++ +    NL  L     +   SL+ L++ +N I  + +++      NLT L++R 
Sbjct: 563 KIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 30/140 (21%), Positives = 43/140 (30%), Gaps = 18/140 (12%)

Query: 67  NVRRLSLMQNQI-----ETLSEVPTCPHFVTLFLDFNGELKMIADGFFQL-MPSLKVLKM 120
            +  L L   Q+     E L           L L  +         F  L   +L +L +
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 121 SNCWNLKFLVG--MSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRG--------T 169
           S   NL  +     + L  L+   +  N I+ L    L  L N+  LNL+          
Sbjct: 256 SYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 170 GQLNKIPRQLISNFSRLRGL 189
             L KI          L  L
Sbjct: 315 ASLPKIDDFSFQWLKCLEHL 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 9/145 (6%)

Query: 51  CAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGF 108
           C        P+       R L L +N+I+TL++    + PH   L L+ N  +  +  G 
Sbjct: 18  CHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGA 75

Query: 109 FQLMPSLKVLKMSNCWNLKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLN 165
           F  + +L+ L + +   LK + +G+ + L +L  LDIS+N I  L + + + L NL  L 
Sbjct: 76  FNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134

Query: 166 LRGTGQLNKIPRQLISNFSRLRGLR 190
           +     L  I  +  S  + L  L 
Sbjct: 135 VGDN-DLVYISHRAFSGLNSLEQLT 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 66  ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
            N+R L L  N+++ +         +   L +  N ++ ++ D  FQ + +LK L++ + 
Sbjct: 80  FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN 138

Query: 124 WNLKFLVGM--SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLI 180
            +L ++     S L SL+ L + +  +  +P E L  L  L  L LR    +N I     
Sbjct: 139 -DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSF 196

Query: 181 SNFSRLRGLR 190
               RL+ L 
Sbjct: 197 KRLYRLKVLE 206

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 8/128 (6%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N++ L +  N +  +S            L L+    L  I       +  L VL++ +  
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL- 186

Query: 125 NLKFL--VGMSKLGSLQLLDISQ-NAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLIS 181
           N+  +      +L  L++L+IS    ++ +       +NLT L++     L  +P   + 
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVR 245

Query: 182 NFSRLRGL 189
           +   LR L
Sbjct: 246 HLVYLRFL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N+  LS+    +  +  +      +   L L +N  +  I       +  L+ +++    
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG- 282

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRG 168
            L  +       L  L++L++S N +  L E +   + NL  L L  
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 7/128 (5%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
             +R+ L  N+I  +       C +   L+L  N  L  I    F  +  L+ L +S+  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLIS 181
            L+ +       LG L  L + +  ++EL     + L  L  L L+    L  +P     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR 150

Query: 182 NFSRLRGL 189
           +   L  L
Sbjct: 151 DLGNLTHL 158

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N+  L L  N +  +             L L  N +L+ +    F  +  L  L +  C 
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC- 115

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLIS 181
            L+ L  G+   L +LQ L +  NA++ LP++  + L NLT L L G  +++ +P +   
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFR 174

Query: 182 NFSRLRGL 189
               L  L
Sbjct: 175 GLHSLDRL 182

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 69  RRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           + L L  N ++ L +       +   LFL  N  +  + +  F+ + SL  L +     +
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN-RV 189

Query: 127 KFLVG--MSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
             +       LG L  L +  N +  LP E L  L  L  L L  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            +++L L  N+ E L ++     P    L +  N +   +  G  + + +L+ L +S+  
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD- 360

Query: 125 NLKFL----VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQ- 178
           +++      + +  L  LQ L++S N    L  E  K    L  L+L  T +L     Q 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQS 419

Query: 179 LISNFSRLRGLR 190
              N   L+ L 
Sbjct: 420 PFQNLHLLKVLN 431

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 10/130 (7%)

Query: 66  ENVRRLSLMQNQIETLSEVPT---CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
             +  L L   +++                L L  +  L + ++  F  +P+L+ L +  
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQG 458

Query: 123 C---WNLKFLVGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPR 177
                           LG L++L +S   +  + +     L  +  ++L    +L     
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI 517

Query: 178 QLISNFSRLR 187
           + +S+   + 
Sbjct: 518 EALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 7/143 (4%)

Query: 51  CAGAGLEEAPDVKEWENVRRLSLMQNQIETL--SEVPTCPHFVTLFLDFNGELKMIADGF 108
           C   GL E P      +   L    N + T+  +      +   L L    ++  I +  
Sbjct: 19  CENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDT 76

Query: 109 FQLMPSLKVLKMSNCWNLKFLVGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNL 166
           FQ    L  L ++    +       S   +L+ L   Q  I  +    L     L  L L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136

Query: 167 RGTGQLNKIPRQLISNFSRLRGL 189
                ++ I         +L+ L
Sbjct: 137 GSN-HISSIKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 9/131 (6%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            ++ L  +Q  I ++  +P        +L+L  N  +  I          LKVL   N  
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN- 163

Query: 125 NLKFLVG--MSKLGSLQL--LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
            + +L    MS L       L+++ N I  +            LN  GT  L  I + L 
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 181 -SNFSRLRGLR 190
            S    L    
Sbjct: 224 NSTIQSLWLGT 234

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 30/153 (19%), Positives = 50/153 (32%), Gaps = 32/153 (20%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQL------------- 111
           +V  ++L ++    +S            L L     L  +  G   L             
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKF 313

Query: 112 ----------MPSLKVLKMS-NCWNLKFLVGM-SKLGSLQLLDISQNAIEELP---EELK 156
                      PSL  L +  N   L+   G    L +L+ LD+S + IE       +L+
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 157 LLINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
            L +L  LNL    +   +  +      +L  L
Sbjct: 374 NLSHLQSLNLSYN-EPLSLKTEAFKECPQLELL 405

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 70  RLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMP--SLKVLKMSNCWN 125
                QN +     +   T         +   + + I+   F+ +   S++ + +     
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQKH-Y 265

Query: 126 LKFLVGMS--KLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNF 183
              +   +      LQ LD++   + ELP  L  L  L  L L    +   + +   SNF
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNF 324

Query: 184 SRLRGLR 190
             L  L 
Sbjct: 325 PSLTHLS 331

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 11/134 (8%)

Query: 66  ENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNG-ELKMIADGFFQLMPSLKVLKMSN 122
           E ++ L    N I  LS+  + +      L L+ NG ++  I  G F      + L    
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGG 211

Query: 123 CWNLKFLVGM---SKLGSLQLLDISQNAIEELPEELKL---LINLTCLNLRGTGQLNKIP 176
             NL  +      S + SL L        E++   +      +++  +NL+       I 
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK-HYFFNIS 270

Query: 177 RQLISNFSRLRGLR 190
                 FS L+ L 
Sbjct: 271 SNTFHCFSGLQELD 284

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 7/128 (5%)

Query: 67  NVRRLSLMQNQIETL--SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            +  L +     +              TL +  N          F    +L  L +S C 
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC- 483

Query: 125 NLKFLVG--MSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLIS 181
            L+ +       L  LQLL++S N +  L       L +L+ L+     ++      L  
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQH 542

Query: 182 NFSRLRGL 189
               L   
Sbjct: 543 FPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC- 123
           ++  L  ++ ++ +L   P         L +  N         +F  + +L  + +S   
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 124 ------WNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177
                  +L+FL    ++     LD+S N I+ + ++    I L  L LRG    + I +
Sbjct: 165 IQTITVNDLQFLRENPQV--NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 178 QLISNFSRLRGLR 190
             + N + L   R
Sbjct: 223 TCLQNLAGLHVHR 235

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 11/140 (7%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           ++   DV +    + LS+++ Q++    +   P   +L L  N   K         +PSL
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMN---KGSISFKKVALPSL 352

Query: 116 KVLKMSNCWNLKFL----VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQ 171
             L +S    L F            SL+ LD+S N    +      L  L  L+ + +  
Sbjct: 353 SYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-T 410

Query: 172 LNKI-PRQLISNFSRLRGLR 190
           L ++       +  +L  L 
Sbjct: 411 LKRVTEFSAFLSLEKLLYLD 430

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 66  ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
            + + + L  N ++ L             L L    E++ I D  +  +  L  L ++  
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN 90

Query: 124 WNLKFLVGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPR-QLI 180
               F  G  S L SL+ L   +  +  L    +  LI L  LN+      N I   +L 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH----NFIHSCKLP 146

Query: 181 SNFSRLRGLR 190
           + FS L  L 
Sbjct: 147 AYFSNLTNLV 156

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVP----TCPHFVTLFLDFNGELKMIADGFFQL 111
              +       ++  L L +N +                  L L FNG +  I    F  
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI--IMSANFMG 397

Query: 112 MPSLKVLKMSNCW--NLKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
           +  L+ L   +     +        L  L  LDIS    +   +     L +L  L + G
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 169 TGQLNKIPRQLISNFSRLRGL 189
               +     + +N + L  L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 10/104 (9%)

Query: 88  PHFVTLFLDFNG-ELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQN 146
                                 F  + ++  + ++   ++K+L  + K    Q L I + 
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRC 317

Query: 147 AIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLR 190
            +++ P     L  L  L L      NK    +      L  L 
Sbjct: 318 QLKQFPT--LDLPFLKSLTLTM----NKG--SISFKKVALPSLS 353

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
            +  L  A   +     +     +  L L  NQI  +S +        L L+ N +L+ I
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDI 302

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCL 164
           +      + +L  L +    N+  +  +S L  LQ L    N + ++   L  L N+  L
Sbjct: 303 SP--ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWL 358

Query: 165 NLRGTGQLNKIPRQLISNFSRLRGLRKF 192
           +       N+I    ++  + L  + + 
Sbjct: 359 SAGH----NQI--SDLTPLANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           N+  L    NQI  ++ +    +   L L+ N +LK I  G    + +L  L ++N   +
Sbjct: 200 NLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANN-QI 255

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
             L  +S L  L  L +  N I  +   L  L  LT L L      N++  + IS  S L
Sbjct: 256 SNLAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNE----NQL--EDISPISNL 308

Query: 187 RGLRK 191
           + L  
Sbjct: 309 KNLTY 313

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 11/147 (7%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
            ++ L   G  L++   +    N+  L L  NQI  L+ +        L L  N ++  I
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNI 280

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCL 164
           +      + +L  L+++    L+ +  +S L +L  L +  N I ++   +  L  L  L
Sbjct: 281 SP--LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRL 336

Query: 165 NLRGTGQLNKIPRQLISNFSRLRGLRK 191
                   NK+    +S+ + L  +  
Sbjct: 337 FFYN----NKV--SDVSSLANLTNINW 357

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 8/134 (5%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           + +     + + V  L   +  I+++  V    +   +    N +L  I     + +  L
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDIT--PLKNLTKL 92

Query: 116 KVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
             + M+N   +  +  ++ L +L  L +  N I ++   LK L NL  L L     ++ I
Sbjct: 93  VDILMNNN-QIADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDI 149

Query: 176 PRQLISNFSRLRGL 189
               +S  + L+ L
Sbjct: 150 SA--LSGLTSLQQL 161

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           + +   +K   N+ RL L  N I  +S +        L    N    +        + +L
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP---LANLTTL 179

Query: 116 KVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
           + L +S+   +  +  ++KL +L+ L  + N I ++   L +L NL  L+L G    N++
Sbjct: 180 ERLDISSN-KVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNG----NQL 233

Query: 176 PRQLISNFSRLRGLRKF 192
             + I   + L  L   
Sbjct: 234 --KDIGTLASLTNLTDL 248

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
               +  L +  +             TL  D  G +K I     + + +L  +  SN   
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-IKSID--GVEYLNNLTQINFSNN-Q 79

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR 185
           L  +  +  L  L  + ++ N I ++   L  L NLT L L    Q+  I    + N + 
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTN 135

Query: 186 LRGL 189
           L  L
Sbjct: 136 LNRL 139

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           L +   +K    +  + +  NQI  ++ +    +   L L  N ++  I     + + +L
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP--LKNLTNL 136

Query: 116 KVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
             L++S+   +  +  +S L SLQ L       +  P  L  L  L  L++      NK+
Sbjct: 137 NRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISS----NKV 189

Query: 176 PRQLISNFSRLRGLRK 191
               IS  ++L  L  
Sbjct: 190 --SDISVLAKLTNLES 203

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 12/125 (9%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           N+ +++   NQ+  ++ +      V + ++ N ++  I       + +L  L + N   +
Sbjct: 69  NLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-QI 124

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
             +  +  L +L  L++S N I ++   L  L +L  L+       N++    +   + L
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-----NQV--TDLKPLANL 176

Query: 187 RGLRK 191
             L +
Sbjct: 177 TTLER 181

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
            +  L      LE+   +   +N+  L+L  N I  +S V +      LF   N ++  +
Sbjct: 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDV 346

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCL 164
           +      + ++  L   +   +  L  ++ L  +  L ++  A    P   K  +++   
Sbjct: 347 SS--LANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 165 NLRGTGQLNKIPRQLISNFSRLRGL 189
               TG L  I    IS+       
Sbjct: 404 VKNVTGAL--IAPATISDGGSYTEP 426

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 76  NQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKL 135
             I  +         +   L        ++      +  +  L+      +K + G+  L
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRL-GIKSIDGVEYL 67

Query: 136 GSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRK 191
            +L  ++ S N + ++   LK L  L  + +      N+I    I+  + L  L  
Sbjct: 68  NNLTQINFSNNQLTDIT-PLKNLTKLVDILMNN----NQIAD--ITPLANLTNLTG 116

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 10/147 (6%)

Query: 44  EKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM 103
           E I  LV AG  +     ++   N+  L+L  NQI  +S +        L++  N ++  
Sbjct: 44  ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITD 102

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC 163
           I+    Q + +L+ L ++   N+  +  ++ L  +  L++  N        L  +  L  
Sbjct: 103 IS--ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159

Query: 164 LNLRGTGQLNKIPRQLISNFSRLRGLR 190
           L +      +K+  + ++  + L  L 
Sbjct: 160 LTVTE----SKV--KDVTPIANLTDLY 180

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
               R  L +  +  +           L +    ++  I     + + +L+ L ++    
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELESITKLVVAGE-KVASIQG--IEYLTNLEYLNLNGN-Q 77

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR 185
           +  +  +S L  L  L I  N I ++   L+ L NL  L L     ++ I    ++N ++
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP--LANLTK 133

Query: 186 LRGL 189
           +  L
Sbjct: 134 MYSL 137

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 1e-08
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           + +   V     +  L +  N+I  LS +        L +  N  +  I     + +  L
Sbjct: 211 ITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ-ISDI--NAVKDLTKL 267

Query: 116 KVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNK 174
           K+L + +   +  +  ++ L  L  L ++ N +     E +  L NLT L L      N 
Sbjct: 268 KMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ----NH 322

Query: 175 IPRQLISNFSRLRGLRKF 192
           I    I   + L  +   
Sbjct: 323 I--TDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  L++ +++++ ++ +       +L L++N +++ I       + SL          +
Sbjct: 156 GLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDI--SPLASLTSLHYFTAYVN-QI 211

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
             +  ++ +  L  L I  N I +L   L  L  LT L +    Q++ I    + + ++L
Sbjct: 212 TDITPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTN-QISDIN--AVKDLTKL 267

Query: 187 RGL 189
           + L
Sbjct: 268 KML 270

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           ++  LSL  NQIE +S + +           N ++  I       M  L  LK+ N   +
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNN-KI 233

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
             L  ++ L  L  L+I  N I ++   +K L  L  LN+      N+I    IS  + L
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGS----NQI--SDISVLNNL 286

Query: 187 RGLRKF 192
             L   
Sbjct: 287 SQLNSL 292

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 71  LSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLV 130
           L+ +   I  +         +   L       ++     + + S+  L ++    +  + 
Sbjct: 5   LATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGE-KVASIQ 60

Query: 131 GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLR 190
           G+  L +L+ L+++ N I ++   L  L+ LT L +      NKI    IS    L  LR
Sbjct: 61  GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGT----NKI--TDISALQNLTNLR 113

Query: 191 K 191
           +
Sbjct: 114 E 114

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 4e-05
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  L +  NQI  ++ V        L +  N ++  I+      +  L  L ++N   L
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDISV--LNNLSQLNSLFLNNN-QL 299

Query: 127 KFLV--GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
                  +  L +L  L +SQN I ++   L  L  +   +         I
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN----QVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 2/106 (1%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
           ++ +L      + +   VK+   ++ L++  NQI  +S +       +LFL+ N +L   
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNN-QLGNE 302

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEE 150
                  + +L  L +S   ++  +  ++ L  +   D +   I++
Sbjct: 303 DMEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQVIKK 347

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 60  PDVKEWENVRRLSLMQNQIETLSEVPT---CPHFVTLFLDFNGELKMIADGFFQLMPSLK 116
            +    E +  L    + ++ +SE        + + L +      ++  +G F  + SL+
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLE 448

Query: 117 VLKMSNCWNLKFLV---GMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQL 172
           VLKM+   + +        ++L +L  LD+SQ  +E+L P     L +L  LN+      
Sbjct: 449 VLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NF 506

Query: 173 NKIPRQLISNFSRLRGL 189
             +        + L+ L
Sbjct: 507 FSLDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
             + L L+  +     + PT        L F       A     L PSL+ L +S     
Sbjct: 305 GWQHLELVNCK---FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLS 360

Query: 127 KFLVG---MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNF 183
                        SL+ LD+S N +  +      L  L  L+ + +         +  + 
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 184 SRLRGL 189
             L  L
Sbjct: 421 RNLIYL 426

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           ++++L  ++  + +L   P         L +  N         +F  + +L+ L +S+  
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN- 159

Query: 125 NLKFLVG--MSKLGSLQL----LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ 178
            ++ +    +  L  + L    LD+S N +  +       I L  L LR       + + 
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 179 LISNFSRLRGLR 190
            I   + L   R
Sbjct: 220 CIQGLAGLEVHR 231

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 81  LSEVPTC--PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMS--KLG 136
             ++P         L L FN  L+ +    F   P L+VL +S C  ++ +   +   L 
Sbjct: 19  FYKIPDNLPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS 76

Query: 137 SLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
            L  L ++ N I+ L       L +L  L    T  L  +    I +   L+ L
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKEL 129

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 18/135 (13%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  + +    I T+ +    P    L LD N ++  +     + + +L  L +S   ++
Sbjct: 172 KLSYIRIADTNITTIPQ-GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SI 228

Query: 127 KFLVG--MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI--------- 175
             +    ++    L+ L ++ N + ++P  L     +  + L      N I         
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN----NNISAIGSNDFC 284

Query: 176 PRQLISNFSRLRGLR 190
           P    +  +   G+ 
Sbjct: 285 PPGYNTKKASYSGVS 299

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 67  NVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS-NCW 124
            + RL L +NQ++ L  ++P       L +  N E+  +    F  +  + V+++  N  
Sbjct: 101 KLERLYLSKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 125 NLKFLVGM--SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
               +       +  L  + I+   I  +P+   L  +LT L+L G  ++ K+    +  
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGN-KITKVDAASLKG 214

Query: 183 FSRLRGLR 190
            + L  L 
Sbjct: 215 LNNLAKLG 222

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 15/150 (10%)

Query: 47  NFLVCAGAGLEEAP-DVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKM 103
             + C+  GLE+ P D+    +   L L  N+I  + +       +  TL L  N ++  
Sbjct: 34  RVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISK 90

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLT 162
           I+ G F  +  L+ L +S   N    +      +LQ L + +N I ++ +     L  + 
Sbjct: 91  ISPGAFAPLVKLERLYLSK--NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 163 CLNLRGTGQLNKIPRQLISN--FSRLRGLR 190
            + L      N +    I N  F  ++ L 
Sbjct: 149 VVELGT----NPLKSSGIENGAFQGMKKLS 174

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN-- 122
           N+ +L L  N I  +        PH   L L+ N +L  +  G       ++V+ + N  
Sbjct: 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADH-KYIQVVYLHNNN 274

Query: 123 -----CWNLKFLVGMSKLGSLQLLDISQNAIE--ELPEEL-KLLINLTCLNLRG 168
                  +       +K  S   + +  N ++  E+     + +     + L  
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 28/131 (21%), Positives = 42/131 (32%), Gaps = 11/131 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTC----PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
            + +LSL  N +                  L L FN  +  ++  F  L   L+ L   +
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGL-EQLEHLDFQH 110

Query: 123 CWNLKFLVGMS---KLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQ 178
             NLK +   S    L +L  LDIS              L +L  L + G          
Sbjct: 111 S-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 179 LISNFSRLRGL 189
           + +    L  L
Sbjct: 170 IFTELRNLTFL 180

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 47  NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNG-ELKM 103
             + C   GL   P      +  RL L  N++++L             L L  NG   K 
Sbjct: 10  TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFL-VGMSKLGSLQLLDISQNAIEELPEE--LKLLIN 160
                     SLK L +S    +  +      L  L+ LD   + ++++ E      L N
Sbjct: 69  CCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 161 LTCLNLRGTGQLNKIPRQLISNFSRLRGLR 190
           L  L++  T         + +  S L  L+
Sbjct: 128 LIYLDISHT-HTRVAFNGIFNGLSSLEVLK 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N+  L +                     L +  N   +      F  + +L  L +S C 
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 185

Query: 125 NLKFLVGMS--KLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLIS 181
            L+ L   +   L SLQ+L++S N    L     K L +L  L+      +    +Q + 
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ 244

Query: 182 NF-SRLRGLR 190
           +F S L  L 
Sbjct: 245 HFPSSLAFLN 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +  L + + ++  + +         L LD N +++ I          L  L + +   +
Sbjct: 173 KLNYLRISEAKLTGIPK-DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGH-NQI 229

Query: 127 KFLVG--MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR------Q 178
           + +    +S L +L+ L +  N +  +P  L  L  L  + L     + K+         
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG 288

Query: 179 LISNFSRLRGLR 190
                +   G+ 
Sbjct: 289 FGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 47  NFLVCAGAGLEEAP-DVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKM 103
             + C+  GL+  P ++    +   L L  N I  L +       H   L L  N ++  
Sbjct: 36  RVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISK 92

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLT 162
           I +  F  +  L+ L +S   +L  +       SL  L I  N I ++P+     L N+ 
Sbjct: 93  IHEKAFSPLRKLQKLYISKN-HLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 163 CLNLRGTGQLNKIPRQLISN--FSRLR 187
           C+ + G    N +         F  L+
Sbjct: 151 CIEMGG----NPLENSGFEPGAFDGLK 173

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 81  LSEVPT-CPHFVT-LFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGM--SKLG 136
           L  VP       T L L  N ++  +    F+ +  L  L + N   +  +     S L 
Sbjct: 45  LKAVPKEISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLR 102

Query: 137 SLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
            LQ L IS+N + E+P    L  +L  L +    ++ K+P+ + S    +  +
Sbjct: 103 KLQKLYISKNHLVEIPPN--LPSSLVELRIHDN-RIRKVPKGVFSGLRNMNCI 152

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 65  WENVRRLSLMQNQIETLSEVPTCP----HFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
            + ++ L L +N ++   +V           TL +  N       D       S+ VL +
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
           S+   L   V       +++LD+  N I  +P+++  L  L  LN+  + QL  +P  + 
Sbjct: 436 SSN-MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVA-SNQLKSVPDGVF 493

Query: 181 SNFSRLRGL 189
              + L+ +
Sbjct: 494 DRLTSLQYI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
             + LSL QN I  L    +        L L  N  ++ +    F     L+ L +S+  
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH-- 109

Query: 125 N-LKFLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLIS 181
           N L+ +     + SL+ LD+S N  + LP   E   L  LT L L    +  ++    ++
Sbjct: 110 NRLQNI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDLLPVA 167

Query: 182 N 182
           +
Sbjct: 168 H 168

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 18/139 (12%)

Query: 67  NVRRLSLMQNQIETLSEVP-----------TCPHFVTLFLDFNGELKMI-ADGFFQLMPS 114
            ++ L++  N+  + +++            T P     ++ +N  L+   A    Q M  
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVK 574

Query: 115 LKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLN 173
           L +L   +   ++ L        L  L +  N IEE+PE+       +  L      +L 
Sbjct: 575 LGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLK 632

Query: 174 KIPRQLISNFSRLRGLRKF 192
            IP     N   +  +   
Sbjct: 633 YIPNIF--NAKSVYVMGSV 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 14/158 (8%)

Query: 47  NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETL--SEVPTCPHFVTLFLDFN------ 98
           N +   G  +  + D  +  N   ++L  N+I+        T     T+ L  N      
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 99  GELKMIADGFFQLMPSLKVLKMSNCWNLKFL---VGMSKLGSLQLLDISQNAIEELPEEL 155
                  DG ++    L  + +     L  L      + L  L  +D+S N     P + 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772

Query: 156 KLLINLTCLNLRGTGQL--NKIPRQLISNFSRLRGLRK 191
                L    +R       N+I RQ  +  +    L +
Sbjct: 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 17/135 (12%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            ++ +    +     +       +     D+  + +     +  L   L  +++ NC N+
Sbjct: 449 KLQIIYFANSP---FTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNM 504

Query: 127 KFL-VGMSKLGSLQLLDISQNAIE----------ELPEELKLLINLTCLNLRGTGQLNKI 175
             L   +  L  LQ L+I+ N              L ++      +    +     L + 
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEF 563

Query: 176 P-RQLISNFSRLRGL 189
           P    +    +L  L
Sbjct: 564 PASASLQKMVKLGLL 578

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 65  WENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS 121
              +  + L  N++ +LS+     T P+   + + +N                LK   + 
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNS-SQLKAFGIR 784

Query: 122 NCWNL-------KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
           +  +        ++  G++   SL  L I  N I ++ E+  L   L  L++  
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK--LTPQLYILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 17/142 (11%), Positives = 44/142 (30%), Gaps = 22/142 (15%)

Query: 67  NVRRLSLMQNQIETL---SEVPTCPHFVTLFLDFNGELKMIADGFFQLMP-----SLKVL 118
            V  L    N+++ +       +     ++   +N ++          M      +   +
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTV 678

Query: 119 KMSNCWNLKFLVG--MSKLGSLQLLDISQNAIEELPEE--------LKLLINLTCLNLRG 168
            +S    ++       +    +  + +S N +  +PE          K    LT ++LR 
Sbjct: 679 TLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 169 TGQLNKIPRQL-ISNFSRLRGL 189
             +L  +      +    L  +
Sbjct: 738 N-KLTSLSDDFRATTLPYLSNM 758

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTL------FLDFNGELKMIADGFFQLMPSLKVLK 119
           + +    L+Q+ I    E+        +        +    +  I+    +L   L+++ 
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL-TKLQIIY 454

Query: 120 MSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
            +N     F      +             E        L +LT + L     + ++P   
Sbjct: 455 FANS---PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF- 510

Query: 180 ISNFSRLRGL 189
           + +   L+ L
Sbjct: 511 LYDLPELQSL 520

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 67  NVRRLSLMQNQIETL-SEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
            +  L  + NQ+E       +     +L L +N ++  I   F      ++ L  ++   
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-K 388

Query: 126 LKFL---VGMSKLGSLQLLDISQNAIE--------ELPEELKLLINLTCLNLRGTGQLNK 174
           LK++        +  +  +D S N I          L       IN++ +NL    Q++K
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISK 447

Query: 175 IPRQLISNFSRLRGL 189
            P++L S  S L  +
Sbjct: 448 FPKELFSTGSPLSSI 462

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 67  NVRRLSLMQNQIETL--SEVPTCPHFVTLFLDFN-------GELKMIADGFFQLMPSLKV 117
           NV  ++L  NQI         T     ++ L  N         LK   + F      L  
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT-YLLTS 492

Query: 118 LKMSNCWNLKFL---VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQL-- 172
           + +     L  L      + L  L  +D+S N+  + P +      L    +R       
Sbjct: 493 IDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 173 NKIPRQLISNFSRLRGLRK 191
           N+  R+     +    L +
Sbjct: 552 NRTLREWPEGITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 15/132 (11%)

Query: 65  WENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS 121
              +  + L  N++  LS+     T P+ V + L +N               +LK   + 
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNS-STLKGFGIR 544

Query: 122 NCWNL---KFL----VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNK 174
           N  +    + L     G++   SL  L I  N I ++ E+  +  N++ L+++       
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK--ITPNISVLDIKDN-PNIS 601

Query: 175 IPRQLISNFSRL 186
           I    +  +   
Sbjct: 602 IDLSYVCPYIEA 613

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 18/137 (13%)

Query: 67  NVRRLSLMQNQIETLSEVPT----CPHFVTLFLDFN--GELKMIADGFFQL-----MPSL 115
           ++  + +       L+++PT     P    + +  N     + + D +  L        +
Sbjct: 250 DLTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 116 KVLKMSNCWNLKFL---VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQL 172
           +++ +    NLK       + K+  L +L+   N +E         I L  LNL    Q+
Sbjct: 308 QIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QI 365

Query: 173 NKIPRQLISNFSRLRGL 189
            +IP        ++  L
Sbjct: 366 TEIPANFCGFTEQVENL 382

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 27/128 (21%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
           E ++ + +  N ++T                       +     ++   L +L+      
Sbjct: 305 EKIQIIYIGYNNLKTFP---------------------VETSLQKM-KKLGMLECLYN-Q 341

Query: 126 LK-FLVGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQL-ISN 182
           L+  L        L  L+++ N I E+P         +  L+     +L  IP      +
Sbjct: 342 LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKS 400

Query: 183 FSRLRGLR 190
            S +  + 
Sbjct: 401 VSVMSAID 408

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 11/148 (7%)

Query: 44  EKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM 103
                +    + + +     + + +  LS     + T+  V    + + L L  N ++  
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITD 77

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC 163
           +A    + +  +  L++S    LK +  ++ L S++ LD++   I ++   L  L NL  
Sbjct: 78  LAP--LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQV 133

Query: 164 LNLRGTGQLNKIPRQLISNFSRLRGLRK 191
           L L      N+I    IS  + L  L+ 
Sbjct: 134 LYLDL----NQI--TNISPLAGLTNLQY 155

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 6/120 (5%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           N++ L L  NQI  +S +    +   L +    ++  +       +  L  LK  +   +
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLT--PLANLSKLTTLKADDN-KI 185

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
             +  ++ L +L  + +  N I ++   L    NL  + L     +   P    +N    
Sbjct: 186 SDISPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQ-TITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
           +     +    N++ LS+   Q+  L+ +       TL  D N ++  I+      +P+L
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KISDISP--LASLPNL 197

Query: 116 KVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
             + + N   +  +  ++   +L ++ ++   I   P       NL   N+        I
Sbjct: 198 IEVHLKNN-QISDVSPLANTSNLFIVTLTNQTITNQPVFYNN--NLVVPNVVKGPSGAPI 254

Query: 176 PRQLISN 182
               IS+
Sbjct: 255 APATISD 261

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 75  QNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVG--M 132
              +++L  +P   +   L+++    L+ +     + +  L+ L +     L+F+     
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAF 76

Query: 133 SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
                L  L++S NA+E L  +    ++L  L L G
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSG 112

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 10/132 (7%)

Query: 67  NVRRLSLMQNQIETLSEVP--TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           ++++L  ++  + +L   P         L +  N         +F  + +L+ L +S+  
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN- 159

Query: 125 NLKFL-----VGMSKLGSLQL-LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ 178
            ++ +       + ++  L L LD+S N +  +       I L  L L    QL  +P  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDG 218

Query: 179 LISNFSRLRGLR 190
           +    + L+ + 
Sbjct: 219 IFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 12/131 (9%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           + + L L  N +  L      + P    L L    E++ I DG +Q +  L  L ++   
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG-- 85

Query: 125 N-LKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLI 180
           N ++ L +G  S L SLQ L   +  +  L       L  L  LN+     +        
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV-AHNLIQSFKLP-- 142

Query: 181 SNFSRLRGLRK 191
             FS L  L  
Sbjct: 143 EYFSNLTNLEH 153

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.3 bits (120), Expect = 9e-08
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 66  ENVRRLSLMQNQIETLS--EVPTCPHFVTLFLDFN---GELKMIADGFFQLMPSLKVLKM 120
             ++ LS+ Q      S  +V   P   TL L  N   GE  +I+       P+L+VL +
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 121 SNCWNLKFLVGM-----SKLGSLQLLDISQNAIEELPEELK--LLINLTCLNLRGTGQLN 173
            N   ++   G+     +    LQ LD+S N++ +            L  LNL  T  L 
Sbjct: 209 RNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK 266

Query: 174 KIPRQLISNFSRL 186
           ++P+ L +  S L
Sbjct: 267 QVPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 55  GLEEAPDVKEWENVRRLSLMQNQIETLSEVP-----TCPHFVTLFLDFNGELKMIADGFF 109
           GL  A    ++  ++ L+L    +ET S V             L L  N           
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 110 QLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
                L  L +S    LK +        L +LD+S N ++  P   +L   +  L+L+G
Sbjct: 250 DWPSQLNSLNLSFT-GLKQVPK-GLPAKLSVLDLSYNRLDRNPSPDELP-QVGNLSLKG 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 9e-08
 Identities = 31/135 (22%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125
             + +L +  NQ+ +L  +P  P    L +  N +L  +          L  L   N   
Sbjct: 121 SGLCKLWIFGNQLTSLPVLP--PGLQELSVSDN-QLASLPALP----SELCKLWAYNN-Q 172

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIP------RQL 179
           L  L        LQ L +S N +  LP     L  L   N     +L  +P      ++L
Sbjct: 173 LTSL--PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKEL 226

Query: 180 ISNFSRLRGLRKFIT 194
           I + +RL  L    +
Sbjct: 227 IVSGNRLTSLPVLPS 241

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 63  KEWENVRRLSLMQNQIETLSEVPTC--PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
             W         + +   + ++  C       L +  +G L  + D        +  L +
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCLPA---HITTLVI 68

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
            +  NL  L   +    L+ L++S N +  LP     L+ L+  +   T  L  +P  L 
Sbjct: 69  PDN-NLTSLP--ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT-HLPALPSGLC 124

Query: 181 S 181
            
Sbjct: 125 K 125

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            + +L    N++ +L  +P+      L +  N  L  +      L   LK L +S    L
Sbjct: 202 ELYKLWAYNNRLTSLPALPS--GLKELIVSGN-RLTSLPV----LPSELKELMVSGN-RL 253

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
             L        L  L + +N +  LPE L  L + T +NL G   L++   Q +   +  
Sbjct: 254 TSLP--MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSA 310

Query: 187 RGL 189
            G 
Sbjct: 311 PGY 313

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 63  KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
                ++ LS+  NQ+ +L  +P       L+   N  L  +      L   LK L +S 
Sbjct: 178 MLPSGLQELSVSDNQLASLPTLP--SELYKLWAYNN-RLTSLPA----LPSGLKELIVSG 230

Query: 123 CWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN 182
              L  L        L+ L +S N +  LP        L  L++    QL ++P   + +
Sbjct: 231 N-RLTSLP--VLPSELKELMVSGNRLTSLPMLPS---GLLSLSVYRN-QLTRLPES-LIH 282

Query: 183 FSRLRGL 189
            S    +
Sbjct: 283 LSSETTV 289

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 15/121 (12%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
           ++  L +  N + +L  +P  P   TL +  N +L  +      L   L +       +L
Sbjct: 62  HITTLVIPDNNLTSLPALP--PELRTLEVSGN-QLTSLPVLPPGL-LELSIFSNPLT-HL 116

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
             L        L  L I  N +  LP        L  L++    QL  +P  L S   +L
Sbjct: 117 PAL-----PSGLCKLWIFGNQLTSLPVLPP---GLQELSVSDN-QLASLP-ALPSELCKL 166

Query: 187 R 187
            
Sbjct: 167 W 167

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 21/149 (14%)

Query: 48  FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADG 107
           +L      L   P+     +++ L +  NQ+  L E+P       +  D N +L M+ + 
Sbjct: 104 YLDACDNRLSTLPE--LPASLKHLDVDNNQLTMLPELPA--LLEYINADNN-QLTMLPE- 157

Query: 108 FFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLT----C 163
              L  SL+VL + N   L FL       SL+ LD+S N +E LP       +       
Sbjct: 158 ---LPTSLEVLSVRNN-QLTFL--PELPESLEALDVSTNLLESLPAVPVRNHHSEETEIF 211

Query: 164 LNLRGTGQLNKIPRQLISNFSRLRGLRKF 192
              R     N+I   +  N   L      
Sbjct: 212 FRCRE----NRI-THIPENILSLDPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 62  VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS 121
             +WE        +N+  +L +      F  L L+    L  + D      P + VL+++
Sbjct: 33  WDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNLP---PQITVLEIT 88

Query: 122 NCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQL 179
               L  L       SL+ LD   N +  LPE      +L  L++    QL  +P   
Sbjct: 89  QN-ALISLP--ELPASLEYLDACDNRLSTLPELPA---SLKHLDVDNN-QLTMLPELP 139

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 18/146 (12%), Positives = 39/146 (26%), Gaps = 7/146 (4%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN- 125
           ++  LS+  NQ+  L E+P       L +  N  L+ +     +   S +      C   
Sbjct: 161 SLEVLSVRNNQLTFLPELPESLE--ALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN 217

Query: 126 -LKFL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISN 182
            +  +   +  L     + +  N +     E L         +           +Q   +
Sbjct: 218 RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

Query: 183 FSRLRGLRKFITCASSQLKVSTWENL 208
                 +  +            W   
Sbjct: 278 RPLADAVTAWFPENKQSDVSQIWHAF 303

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 12/132 (9%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVT----LFLDFNGELKMIADGFFQLMPSLKVLKMS 121
           E +  + L QN I+ +   P           + L  N ++  +A   FQ + SL  L + 
Sbjct: 32  ETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLY 88

Query: 122 NCWNLKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQ 178
               +  L   +   L SLQLL ++ N I  L  +  + L NL  L+L    +L  I + 
Sbjct: 89  GN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY-DNKLQTIAKG 146

Query: 179 LISNFSRLRGLR 190
             S    ++ + 
Sbjct: 147 TFSPLRAIQTMH 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 69  RRLSLMQNQIETLSEVP---TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC-- 123
             + L +N++E L  +      PH   L L+ N       D      PSL+ L +     
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 124 ---WNLKFLVGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKI 175
              W  +    +   L  LQ+L ++ N +  LP      L  L  L+L      N++
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS----NRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 21/119 (17%), Positives = 51/119 (42%), Gaps = 11/119 (9%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           +++ L+L  N+I  +++       +   L L +N  L  +    F  +P +  + +    
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN- 348

Query: 125 NLKFLVG--MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLIS 181
           ++  +       L  LQ LD+  NA+  +      + ++  + L G  +L  +P+  ++
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGN-KLVTLPKINLT 402

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
              RL L  N I T++    P       L L        I    F+ +P+L++L + +  
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 125 NLKFLVGM-SKLGSLQLLDISQNAIEEL---PEELKLLINLTCLNLRGTGQLNKIPR-QL 179
                      L  L  L +    + +        + L  LT L+L      N+I    L
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK----NQIRSLYL 140

Query: 180 ISNFSRLRGLR 190
             +F +L  L+
Sbjct: 141 HPSFGKLNSLK 151

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 66  ENVRRLSLMQNQIETLSEVPTC-------PHFVTLFLDFNGELKMIADGFFQLMPSLKVL 118
            ++ +L L +N ++   E   C        H   L+L+ N  L  +  G F  + +L+ L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFSHLTALRGL 509

Query: 119 KMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKL---LINLTCLNLRGTGQLNKI 175
            +++   L  L       +L++LDIS+N +     ++ +   ++++T        +L+  
Sbjct: 510 SLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTF 568

Query: 176 PRQLISNFSRLRGLRKFITCAS 197
              L      + G    I C  
Sbjct: 569 INWLNHTNVTIAGPPADIYCVY 590

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 88  PHFVTLFLDFNGELKMIADGFFQLMP--SLKVLKMSNCWNLKFLVGM-SKLGSLQLLDIS 144
            H +     F+  +K      F  +   S++ L +S+ +       +   L  L++L+++
Sbjct: 240 HHIMGAGFGFH-NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 145 QNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
            N I ++ +E    L NL  LNL     L ++         ++  +
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYI 343

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N++ L+L  N +  L        P    + L  N  + +I D  F+ +  L+ L + +  
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN- 372

Query: 125 NLKFLVGMSKLGSL-----------------QLLDISQNAIEELPEE--LKLLINLTCLN 165
            L  +  +  +  +                  L+ +S+N +E L     L  + +L  L 
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 166 LRGTGQLNKIPRQLISNFSRLRGLRK 191
           L    + +          S    L +
Sbjct: 433 LNQN-RFSSCSGD--QTPSENPSLEQ 455

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 16/135 (11%)

Query: 67  NVRRLSLMQNQIETLSEVPT----CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
           ++  L L    +                  L L  N    +     F  + SLK +  S+
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 123 CWNLKFLVGMS----KLGSLQLLDISQNAIEELPEELKL-------LINLTCLNLRGTGQ 171
              +  +        +  +L    ++ N++                 + L  L++ G G 
Sbjct: 158 N-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 172 LNKIPRQLISNFSRL 186
              I     +  S+ 
Sbjct: 217 TVDITGNFSNAISKS 231

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            + +L+L + ++  L    T P   TL L  N +L+ +      L P+L VL +S    L
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQTL-PALTVLDVSFN-RL 112

Query: 127 KFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNF 183
             L +G    LG LQ L +  N ++ LP  L      L  L+L     L ++P  L++  
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGL 171

Query: 184 SRLRGLR 190
             L  L 
Sbjct: 172 ENLDTLL 178

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 12/129 (9%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           +   L L +N + T S   +        L LD   EL  +       +P L  L +S+  
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKL--QVDGTLPVLGTLDLSHN- 87

Query: 125 NLKFLVGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISN 182
            L+ L  +   L +L +LD+S N +  LP    + L  L  L L+G  +L  +P  L   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGL--- 143

Query: 183 FSRLRGLRK 191
            +    L K
Sbjct: 144 LTPTPKLEK 152

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 18/112 (16%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFV--------TLFLDFNGELKMIADGFFQLMPSLKVL 118
            +  L +  N++ +L      P            L+L  N ELK +  G     P L+ L
Sbjct: 101 ALTVLDVSFNRLTSL------PLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKL 153

Query: 119 KMSNCWNLKFL-VGM-SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRG 168
            ++N  NL  L  G+ + L +L  L + +N++  +P+       L    L G
Sbjct: 154 SLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 12/129 (9%)

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
             ++   +  L    + I  ++ +        L    N  +  +         +L  L  
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLAC 92

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
            +   L  L  ++ L  L  L+   N + +L   +     LT LN      L +I    +
Sbjct: 93  DSN-KLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---V 144

Query: 181 SNFSRLRGL 189
           S+ ++L  L
Sbjct: 145 SHNTQLTEL 153

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 12/124 (9%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126
            +       N +  L  V T     TL      +L  I          L   +   C  +
Sbjct: 234 QLTYFDCSVNPLTELD-VSTLSKLTTLHCIQT-DLLEIDLTHN---TQLIYFQAEGCRKI 288

Query: 127 KFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
           K L  ++    L LLD     I EL   L     L  L L  T +L ++    +S+ ++L
Sbjct: 289 KEL-DVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNT-ELTELD---VSHNTKL 341

Query: 187 RGLR 190
           + L 
Sbjct: 342 KSLS 345

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 44  EKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM 103
             +  L C  + + +   +++   + +L    N I TL ++    +   L  D N     
Sbjct: 42  ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSN----K 96

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC 163
           + +     +  L  L       L  L  +S+   L  L+ ++N + E+   +     LT 
Sbjct: 97  LTNLDVTPLTKLTYLNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTE 152

Query: 164 LNLRGTGQLNKIPRQLISNFSRLRGL 189
           L+     ++ K+    ++  ++L  L
Sbjct: 153 LDCHLNKKITKLD---VTPQTQLTTL 175

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 61  DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKM 120
           DV     +  L    N+  T  +V       TL   FN     I +        L  L  
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNC 198

Query: 121 SNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI 180
               N+  L  +++   L  LD S N + E+   +  L  LT  +      L ++    +
Sbjct: 199 DTN-NITKL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN-PLTELDVSTL 253

Query: 181 SNFSRL 186
           S  + L
Sbjct: 254 SKLTTL 259

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
           ++  L C         DV     +  L    N+I  L +V        L  D N  +  +
Sbjct: 149 QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTN-NITKL 206

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCL 164
                     L  L  S+   L  +  ++ L  L   D S N + EL   +  L  LT L
Sbjct: 207 D---LNQNIQLTFLDCSSN-KLTEI-DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTL 259

Query: 165 NLRGTGQLNKIPRQLISNFSRLRGL 189
           +   T  L +I    +++ ++L   
Sbjct: 260 HCIQT-DLLEID---LTHNTQLIYF 280

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 12/121 (9%)

Query: 69  RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKF 128
             L+  +N +  + +V        L    N ++  +          L  L  S    +  
Sbjct: 130 TYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN-KITE 184

Query: 129 LVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRG 188
           L  +S+   L  L+   N I +L   L   I LT L+     +L +I    ++  ++L  
Sbjct: 185 L-DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSN-KLTEID---VTPLTQLTY 237

Query: 189 L 189
            
Sbjct: 238 F 238

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
           ++ +    G    +  DV     +  L      I  L ++   P  V L+L+   EL  +
Sbjct: 276 QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNT-ELTEL 333

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLT 162
                     LK L   N  +++    + K+ +L     ++     +P+E     +LT
Sbjct: 334 D---VSHNTKLKSLSCVNA-HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLT 387

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 12/129 (9%)

Query: 62  VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMS 121
                N  + +L +  +  L              D +  ++ +A    Q   +LK L +S
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-IQSLAG--MQFFTNLKELHLS 71

Query: 122 NCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLIS 181
           +   +  L  +  L  L+ L +++N ++ L   +     L+ L L      N++      
Sbjct: 72  HN-QISDLSPLKDLTKLEELSVNRNRLKNL-NGIPSA-CLSRLFLDN----NELRD--TD 122

Query: 182 NFSRLRGLR 190
           +   L+ L 
Sbjct: 123 SLIHLKNLE 131

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 44  EKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM 103
                       + +    KE   V+  +   + I++L+ +    +   L L  N ++  
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISD 77

Query: 104 IADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC 163
           ++    + +  L+ L ++    LK L G+     L  L +  N + +  + L  L NL  
Sbjct: 78  LS--PLKDLTKLEELSVNRN-RLKNLNGIPSA-CLSRLFLDNNELRDT-DSLIHLKNLEI 132

Query: 164 LNLRGTGQLNKIPRQLISNFSRLRGLRK 191
           L++R     NK+  + I     L  L  
Sbjct: 133 LSIRN----NKL--KSIVMLGFLSKLEV 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 21/128 (16%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIAD-GFFQLMPSLKVLKMSNCW 124
            ++  ++L    +  L+ +    +   L ++         +      + +L+ L++    
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIH----ATNYNPISGLSNLERLRIMGK- 98

Query: 125 NLK--FLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLIS 181
           ++    +  +S L SL LLDIS +A ++    ++  L  +  ++L   G +  I    + 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLK 156

Query: 182 NFSRLRGL 189
               L+ L
Sbjct: 157 TLPELKSL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 112 MPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQ 171
           M SL  + ++N  N+  L G+    +++ L I+          +  L NL  L + G   
Sbjct: 43  MNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMG--- 97

Query: 172 LNKIPRQLISNFSRLRGLRK 191
              +    I N S L  L  
Sbjct: 98  -KDVTSDKIPNLSGLTSLTL 116

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW-N 125
           N++ L++        + +    +   L +    ++          + SL +L +S+   +
Sbjct: 67  NIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR 185
              L  ++ L  +  +D+S N        LK L  L  LN++    ++    + I +F +
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDY--RGIEDFPK 182

Query: 186 LRGL 189
           L  L
Sbjct: 183 LNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 67  NVRRLSLMQNQI--ETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           N+ RL +M   +  + +  +        L +  +             +P +  + +S   
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNG 147

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKI 175
            +  ++ +  L  L+ L+I  + + +    ++    L  L          I
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS----QTI 193

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 15/149 (10%)

Query: 51  CAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGF 108
           C   GL + P++    +V  + L  N I  L+E           L ++      +I +  
Sbjct: 17  CINRGLHQVPELPA--HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 109 FQLMPSLKVLKMSNCWNLKFL-VGM-SKLGSLQLLDISQNAIEE--LPEEL-KLLINLTC 163
           F+ + SL +LK+        L  G  + L +L++L ++Q  ++   L     K L +L  
Sbjct: 75  FRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 164 LNLRGTGQLNKIPR-QLISNFSRLRGLRK 191
           L LR     N I + Q  S F  +R    
Sbjct: 134 LVLRD----NNIKKIQPASFFLNMRRFHV 158

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 67  NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           ++ +L+L QN+I  + +       H + L L  N  L  I    F+ +  L+VL +S   
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN- 357

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRG 168
           +++ L       L +L+ L +  N ++ +P+     L +L  + L  
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 16/138 (11%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNG-ELKMIADGFFQLMPSLKVLKMSNC 123
           ++  L L  NQ   L         +   L L     +  +++  FF+ + SL++L + + 
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 124 WNLKFLV--GM-SKLGSLQLLDISQNAIEELPEEL---KLLINLTCLNLRGTGQLNKIPR 177
            N+K +        +    +LD++ N ++ + EE        + T L L     L  +  
Sbjct: 140 -NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNE 197

Query: 178 QLIS-----NFSRLRGLR 190
             +      N  +   + 
Sbjct: 198 YWLGWEKCGNPFKNTSIT 215

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW- 124
            N+  LSL+   + ++S +P  P    L L  N  +    D   + +P+L  L +S    
Sbjct: 49  VNLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 125 -NLKFLVGMSKLGSLQLLDISQNAIEELPE 153
            ++  L  + KL  L+ LD+    +  L +
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 17/129 (13%)

Query: 64  EWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
           + +    L L       + E         L LD         +G      +L+ L + N 
Sbjct: 9   DMKRRIHLELRNRTPAAVRE---------LVLDNCKSNDGKIEGLTAEFVNLEFLSLINV 59

Query: 124 WNLKFLVGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISN 182
             L  +  + KL  L+ L++S+N I    + L + L NLT LNL G    NK+  + IS 
Sbjct: 60  -GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG----NKL--KDIST 112

Query: 183 FSRLRGLRK 191
              L+ L  
Sbjct: 113 LEPLKKLEC 121

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 56  LEEAPDVKEWENVRRLSLMQNQIETLSEVP-TCPHFVTLFLDFNGELKMIADGFFQLMPS 114
           +E+A         R L L   +I  +  +  T   F  +    N E++ +    F L+  
Sbjct: 9   IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDG--FPLLRR 65

Query: 115 LKVLKMSNCWNLKFLVGM--SKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRG 168
           LK L ++N   +  +       L  L  L ++ N++ EL +   L  L +LT L +  
Sbjct: 66  LKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW-- 124
               +    N+I  L   P      TL ++ N  +  I +G  Q +P L  L ++N    
Sbjct: 43  QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLV 101

Query: 125 NLKFLVGMSKLGSLQLLDISQNAIEELPE 153
            L  L  ++ L SL  L I +N +     
Sbjct: 102 ELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 66  ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC-- 123
           E +  LS +   + +++ +P       L L  N  +    +   +  P+L  L +S    
Sbjct: 42  EELEFLSTINVGLTSIANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 124 WNLKFLVGMSKLGSLQLLDISQNAIEELPE 153
            +L  +  + KL +L+ LD+    +  L +
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 74  MQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMS 133
           M  +I       T      L LD +   +   +G       L+ L   N   L  +  + 
Sbjct: 3   MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLP 61

Query: 134 KLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRK 191
           KL  L+ L++S N +    E L +   NLT LNL G    NKI  + +S    L+ L  
Sbjct: 62  KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG----NKI--KDLSTIEPLKKLEN 114

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 67  NVRRLSLMQNQIETLSEVPT---CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123
               L L  N+   L         P    +    N ++  I +G F+    +  + +++ 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS- 90

Query: 124 WN-LKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQL 179
            N L+ +   M   L SL+ L +  N I  +  +    L ++  L+L    Q+  +    
Sbjct: 91  -NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY-DNQITTVAPGA 148

Query: 180 ISNFSRLRGLR 190
                 L  L 
Sbjct: 149 FDTLHSLSTLN 159

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 31/130 (23%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 67  NVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
           + ++L L  N++ +L             L+L+ N +L+ +  G F+ + +L+ L +++  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK 96

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLIS 181
            L+ L +G+  +L +L  L + +N ++ LP  +   L  LT L+L    +L  +P+ +  
Sbjct: 97  -LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGV-- 152

Query: 182 NFSRLRGLRK 191
            F +L  L++
Sbjct: 153 -FDKLTSLKE 161

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 67  NVRRLSLMQNQIETLSE-VPTC-PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124
            +R L L  N+++TL   +     +  TL++  N  L+ +  G F  + +L  L++    
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN- 119

Query: 125 NLKFL-VGM-SKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLIS 181
            LK L   +   L  L  L +  N ++ LP+ +   L +L  L L    QL ++P     
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFD 178

Query: 182 NFSRLRGLR 190
             + L+ L+
Sbjct: 179 KLTELKTLK 187

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 26/205 (12%), Positives = 66/205 (32%), Gaps = 50/205 (24%)

Query: 7   VGTLVHVCLLEEI----EDDKVKMLDVVRDMALWIACET-----EKEKINFLVCA--GAG 55
             T  H+ L         D+   +L        ++ C       E    N    +     
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLL------LKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 56  LEEAPDVKEWENVRRL------SLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFF 109
           + +      W+N + +      +++++ +  L        F  L + F      I     
Sbjct: 337 IRDGLA--TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAH-I----- 387

Query: 110 QLMPSLKVLKMSNCW-NLKFLVG---MSKLGSLQLLDI-SQNAIEELPEELKLLINLTCL 164
              P+  +L +   W ++        ++KL    L++   + +   +P  + L + +   
Sbjct: 388 ---PT-ILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLE 440

Query: 165 NLRGTGQLNKIPRQLISNFSRLRGL 189
           N      L+   R ++ +++  +  
Sbjct: 441 NEY---ALH---RSIVDHYNIPKTF 459

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 15/140 (10%)

Query: 60  PDVKEWENVRRLSLMQNQ----IETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSL 115
              K   ++  L L +N     + TL+ + +C     L +  N             + SL
Sbjct: 94  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

Query: 116 KVLKMSNCW----NLKFLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTG 170
           +VL +S       N+   V     G L+ L IS N I  ++   +   +NL  L++    
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN- 210

Query: 171 QLN-KIPRQLISNFSRLRGL 189
             +  IP   + + S L+ L
Sbjct: 211 NFSTGIP--FLGDCSALQHL 228

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFN---GELKMIADGFFQLMPSLKVLKMSNC 123
            ++ L++  N+I    +V  C +   L +  N     +      F     +L+ L +S  
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-----PFLGDCSALQHLDISGN 233

Query: 124 WNL--KFLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLN-KIPRQL 179
             L   F   +S    L+LL+IS N     +P     L +L  L+L    +   +IP  L
Sbjct: 234 -KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN-KFTGEIPDFL 289

Query: 180 ISNFSRLRGL 189
                 L GL
Sbjct: 290 SGACDTLTGL 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 4/98 (4%)

Query: 95  LDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIE-ELPE 153
              N     ++     L   L+ L +SN      + G     SL  LD+S+N++   +  
Sbjct: 60  KPLNVGFSAVSSSLLSL-TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118

Query: 154 ELKL--LINLTCLNLRGTGQLNKIPRQLISNFSRLRGL 189
              L     L  LN+                 + L  L
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 13/118 (11%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVT----LFLDFNGELKMIADGFFQLMPSLKVLKMSN 122
           N + L L  NQI  L   P     +     L+L  N +L  +  G F  +  L VL +  
Sbjct: 41  NAQILYLHDNQITKLE--PGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97

Query: 123 CWN-LKFL-VGM-SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177
             N L  L   +  +L  L+ L +  N + ELP  ++ L +LT L L    QL  IP 
Sbjct: 98  --NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALD-QNQLKSIPH 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	210
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.77
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.69
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.65
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.62
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.6
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.58
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.08
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.03
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.84
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.5
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.41
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.36
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.13
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.49
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.99
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.82
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.35
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.95
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	88.61
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	86.89

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.81  E-value=1.4e-18  Score=130.56  Aligned_cols=150  Identities=25%  Similarity=0.305  Sum_probs=133.5

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      .+.|.+..++.+|... .++++.|++++|.++.++..  ..+++|+.|+++ ++.+..++...|..+++|++|++++| .
T Consensus        23 ~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~N~l~~i~~~~~~~l~~L~~L~Ls~N-~   99 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLG-SNQLGALPVGVFDSLTQLTVLDLGTN-Q   99 (229)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             EeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECC-CCCCCCcChhhcccCCCcCEEECCCC-c
Confidence            4778888888888633 37899999999999987443  788999999999 99999999887899999999999999 9


Q ss_pred             ee-ec-ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          126 LK-FL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       126 ~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      ++ ++ ..+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+|...+..+++|+.|++++|++....+
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99 75 5578899999999999999999999999999999999999 8899987668999999999999999976654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=2.1e-18  Score=132.65  Aligned_cols=146  Identities=24%  Similarity=0.433  Sum_probs=89.3

Q ss_pred             EEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257           49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-  127 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-  127 (210)
                      +.+.+..+..++.+..+++++.|++++|.+..++....+++|++|+++ ++.++.+++..+..+++|++|++++| .++ 
T Consensus        46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~  123 (272)
T 3rfs_A           46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVEN-QLQS  123 (272)
T ss_dssp             EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-CCCC
T ss_pred             eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECCCC-cCCc
Confidence            445555666666666666677777776666665544566666666666 66666666554566666666666666 666 


Q ss_pred             ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          128 FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       128 l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      ++ ..++.+++|++|++++|.++.+|.. ++.+++|+.|++++| .++.+|...++.+++|++|++++|.+.
T Consensus       124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC
Confidence            43 3455666666666666666655543 355666666666666 555555544556666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=3.9e-18  Score=129.67  Aligned_cols=155  Identities=23%  Similarity=0.346  Sum_probs=98.7

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.+.+..++.+|..-. ..++.|++++|.+..++..  ..+++|++|+++ ++.++.+++..|..+++|++|++++| 
T Consensus        17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-   93 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD-YNQLQTLSAGVFDDLTELGTLGLANN-   93 (251)
T ss_dssp             TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred             eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECC-CCcCCccCHhHhccCCcCCEEECCCC-
Confidence            456777777777775322 4677777777777665442  556677777777 66666666655666777777777777 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      .++ +| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .++.+|...++.+++|++|++++|.+. .++
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~  171 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP  171 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCC
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC-ccC
Confidence            666 53 4556666777777777766666544 356666777777766 666666544666666777777666663 334


Q ss_pred             hhhhh
Q 039257          202 VSTWE  206 (210)
Q Consensus       202 ~~~f~  206 (210)
                      +..|.
T Consensus       172 ~~~~~  176 (251)
T 3m19_A          172 HGAFD  176 (251)
T ss_dssp             TTTTT
T ss_pred             HHHHh
Confidence            33333

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=7.6e-18  Score=129.38  Aligned_cols=130  Identities=23%  Similarity=0.367  Sum_probs=66.6

Q ss_pred             CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCC
Q 039257           64 EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQ  139 (210)
Q Consensus        64 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~  139 (210)
                      .+++++.|++.+|.++.++..  ..+++|++|+++ ++.+..++...|..+++|++|++++| .++ + +..+..+++|+
T Consensus        59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  136 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLT  136 (270)
T ss_dssp             SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC-SSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC-CCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCC
Confidence            334444444444444444332  334455555555 44455544443445555555555555 555 3 23344555555


Q ss_pred             EEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          140 LLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      +|++++|.++.+|.. +..+++|+.|++++| .++.+|...+..+++|++|++++|.+
T Consensus       137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence            555555555555433 455555666666555 55555544355556666666665555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=2.6e-18  Score=135.69  Aligned_cols=145  Identities=21%  Similarity=0.294  Sum_probs=71.7

Q ss_pred             EEEecCCCCccCCC-ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           48 FLVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        48 ~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      .+.+.+..++.+|. +..++++++|++++|.+..+|.. ..+++|++|+++ ++.+..+|.. +..+++|++|++++|..
T Consensus        85 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls-~n~l~~lp~~-l~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A           85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA-RNPLRALPAS-IASLNRLRELSIRACPE  162 (328)
T ss_dssp             EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEE-SCCCCCCCGG-GGGCTTCCEEEEEEETT
T ss_pred             EEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECC-CCccccCcHH-HhcCcCCCEEECCCCCC
Confidence            34555666666654 44556666666666666655543 555666666666 5555555554 55555555555555412


Q ss_pred             ee-ecccccC---------CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257          126 LK-FLVGMSK---------LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC  195 (210)
Q Consensus       126 ~~-l~~~~~~---------l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  195 (210)
                      .. +|..++.         +++|++|++++|.++.+|..++.+++|++|++++| .+..+|.. ++.+++|++|++++|.
T Consensus       163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELDLRGCT  240 (328)
T ss_dssp             CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEECTTCT
T ss_pred             ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEECcCCc
Confidence            22 4433322         44444444444444444444444444444444444 33333332 3334444444444433


Q ss_pred             c
Q 039257          196 A  196 (210)
Q Consensus       196 ~  196 (210)
                      +
T Consensus       241 ~  241 (328)
T 4fcg_A          241 A  241 (328)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=6.2e-18  Score=126.21  Aligned_cols=150  Identities=25%  Similarity=0.298  Sum_probs=130.8

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.|.+..++.+|..-. +.++.|++.+|.++.++..  ..+++|+.|+++ ++.+..+++..|.++++|++|++++| 
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N-   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGN-   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence            467888899999886332 6899999999999988753  778999999999 99999887666999999999999999 


Q ss_pred             cee-ecc-cccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257          125 NLK-FLV-GMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       125 ~~~-l~~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                      .++ +|. .+.++++|++|++++|.++.+ |..+..+++|++|++++| .++.++...+..+++|+.|++++|++..+-
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence            999 864 468899999999999999977 467889999999999999 888888766899999999999999986543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=9.4e-18  Score=125.23  Aligned_cols=153  Identities=16%  Similarity=0.233  Sum_probs=131.6

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ..+.+.+..++.+|..- ...++.|++++|.++.++.   ...+++|+.|+++ ++.++.+++..|.++++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEECCCC
Confidence            36778888888888532 3568999999999998743   3678999999999 99999998876999999999999999


Q ss_pred             ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257          124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                       .++ + +..+.++++|++|++++|.++.+ |..+..+++|+.|++++| .++.+++..+..+++|+.|++++|++.++.
T Consensus        92 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 -RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             -CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             -ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence             999 6 46689999999999999999977 577889999999999999 888885555999999999999999997766


Q ss_pred             chh
Q 039257          201 KVS  203 (210)
Q Consensus       201 ~~~  203 (210)
                      +..
T Consensus       170 ~l~  172 (220)
T 2v70_A          170 YLA  172 (220)
T ss_dssp             GGH
T ss_pred             chH
Confidence            543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=1.7e-17  Score=122.59  Aligned_cols=151  Identities=21%  Similarity=0.318  Sum_probs=131.4

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.|.+.+++.+|... .++++.|++++|.++.++..  ..+++|++|+++ ++.++.++...|..+++|++|++++| 
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLSTN-   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCCC-
Confidence            46778888888888433 46899999999999987764  678999999999 89999999877889999999999999 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      .++ +| ..+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+.+..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            999 75 5578999999999999999988765 688999999999999 8888888768899999999999999877655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=3.5e-18  Score=134.94  Aligned_cols=155  Identities=21%  Similarity=0.312  Sum_probs=134.7

Q ss_pred             cEEEecCCCCccCCC-ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhH--------hcCCCCCc
Q 039257           47 NFLVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGF--------FQLMPSLK  116 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~--------~~~l~~L~  116 (210)
                      ..+.+.++.++.+|. +..+++|++|++++|.+..+|.. ..+++|+.|++++++....+|...        +.++++|+
T Consensus       107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~  186 (328)
T 4fcg_A          107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ  186 (328)
T ss_dssp             SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCC
T ss_pred             CEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCC
Confidence            356677778888875 67888999999999999988765 788999999999557777777652        23499999


Q ss_pred             EEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257          117 VLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC  195 (210)
Q Consensus       117 ~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  195 (210)
                      +|++++| .++ +|..++.+++|++|++++|.++.+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++++|.
T Consensus       187 ~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          187 SLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCS  264 (328)
T ss_dssp             EEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCT
T ss_pred             EEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCC
Confidence            9999999 999 999999999999999999999999999999999999999999777888875 9999999999999999


Q ss_pred             cCCCcchh
Q 039257          196 ASSQLKVS  203 (210)
Q Consensus       196 ~~~~~~~~  203 (210)
                      +.+.+|..
T Consensus       265 ~~~~~p~~  272 (328)
T 4fcg_A          265 NLLTLPLD  272 (328)
T ss_dssp             TCCBCCTT
T ss_pred             chhhcchh
Confidence            98888753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=1.4e-17  Score=128.16  Aligned_cols=152  Identities=25%  Similarity=0.366  Sum_probs=134.3

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.+.+..+..++.+..+++++.|++++|.++.++..  ..+++|++|+++ ++.+..+++..+..+++|++|++++| 
T Consensus        66 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-  143 (272)
T 3rfs_A           66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYLNLAHN-  143 (272)
T ss_dssp             CEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             cEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC-CCcCCccCHHHhccCCCCCEEECCCC-
Confidence            45677788888888888899999999999999987763  778999999999 89999998877889999999999999 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      .++ +| ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++.+++|+.|++++|++.+..|
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            999 75 5578999999999999999988754 588999999999999 7888887668999999999999999887765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.77  E-value=2.4e-17  Score=126.57  Aligned_cols=157  Identities=21%  Similarity=0.402  Sum_probs=134.5

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.+.+..++.+|..- ...++.|++++|.+..++.  ...+++|+.|+++ ++.++.++...|..+++|++|++++| 
T Consensus        19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n-   95 (270)
T 2o6q_A           19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDN-   95 (270)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSSCTTCCEEECCSS-
T ss_pred             CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcCCCCCCEEECCCC-
Confidence            46788888999888533 2679999999999998875  3788999999999 89999999887889999999999999 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      .++ +| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|...+..+++|+.|++++|.+. .++
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~  173 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK-RVP  173 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCC
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-EeC
Confidence            999 75 567889999999999999998765 4689999999999999 889998876899999999999999884 456


Q ss_pred             hhhhhhc
Q 039257          202 VSTWENL  208 (210)
Q Consensus       202 ~~~f~~l  208 (210)
                      ...|.++
T Consensus       174 ~~~~~~l  180 (270)
T 2o6q_A          174 EGAFDKL  180 (270)
T ss_dssp             TTTTTTC
T ss_pred             hhHhccC
Confidence            5555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.77  E-value=1.8e-17  Score=126.00  Aligned_cols=149  Identities=25%  Similarity=0.337  Sum_probs=130.7

Q ss_pred             EEEecCCCCccCCC--ccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           48 FLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        48 ~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      .+.+.+..+..++.  +..+++++.|++++|.++.++..  ..+++|++|+++ ++.++.+++..|..+++|++|++++|
T Consensus        39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N  117 (251)
T 3m19_A           39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGGN  117 (251)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-CCcccccChhHhcccCCCCEEEcCCC
Confidence            45667777777653  66778999999999999987664  778999999999 99999999877899999999999999


Q ss_pred             ccee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          124 WNLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                       .++ +| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .++.+|...+..+++|+.|++++|++...
T Consensus       118 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          118 -QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             -cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence             999 76 456889999999999999998876 5789999999999999 88888876689999999999999999765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=7.3e-18  Score=123.66  Aligned_cols=144  Identities=17%  Similarity=0.262  Sum_probs=111.4

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..++.+|.+..+++++.|++++|.++.++....+++|+.|+++ ++.+.......+..+++|++|++++| .++
T Consensus        48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~  125 (197)
T 4ezg_A           48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDISHS-AHD  125 (197)
T ss_dssp             EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEECCSS-BCB
T ss_pred             EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEecCC-ccC
Confidence            4566777777778778888888888888877776666778888888888 77777532222778888888888888 777


Q ss_pred             --ecccccCCCcCCEEeccCCc-CcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          128 --FLVGMSKLGSLQLLDISQNA-IEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       128 --l~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                        .|..++.+++|++|++++|. ++.+| .+..+++|+.|++++| .++.++.  +..+++|++|++++|++.
T Consensus       126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred             cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence              56778888888888888886 77776 6788888888888888 7777773  788888888888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=7.5e-18  Score=142.99  Aligned_cols=155  Identities=22%  Similarity=0.262  Sum_probs=131.9

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.|.+.+++.+|..- ...+++|++++|.++.++..  ..+++|++|+++ ++.++.++++.|.++++|++|++++| 
T Consensus        34 ~~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N-  110 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-  110 (635)
T ss_dssp             TEEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             CEEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCC-
Confidence            45678888999998532 25799999999999998754  889999999999 99999999887999999999999999 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCC--CcccccCCCCCCeEEeeccccCCC
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKI--PRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~l--p~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      .++ +| ..+.++.+|++|++++|.++.+|. .++++++|++|++++| .+..+  |. .++.+++|++|++++|.+.+ 
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~-  187 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSSNKIQS-  187 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECCSSCCCE-
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCch-hhccchhhhhhcccCccccc-
Confidence            999 86 678999999999999999998875 4799999999999999 66654  55 48899999999999998854 


Q ss_pred             cchhhhhh
Q 039257          200 LKVSTWEN  207 (210)
Q Consensus       200 ~~~~~f~~  207 (210)
                      +++..|..
T Consensus       188 ~~~~~l~~  195 (635)
T 4g8a_A          188 IYCTDLRV  195 (635)
T ss_dssp             ECGGGGHH
T ss_pred             cccccccc
Confidence            44455544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=2.6e-17  Score=131.56  Aligned_cols=156  Identities=23%  Similarity=0.341  Sum_probs=132.5

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--C-CCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--P-TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ..+.|.+..++.+|..- ...++.|++++|.++.++..  . .+++|+.|+++ ++.+..+++..|.++++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEECCCC
Confidence            36788889999988532 35799999999999987665  3 88999999999 99999999877999999999999999


Q ss_pred             ccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccc---cCCCCCCeEEeeccccC
Q 039257          124 WNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLI---SNFSRLRGLRKFITCAS  197 (210)
Q Consensus       124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~---~~l~~L~~L~l~~~~~~  197 (210)
                       .++ ++ ..+.++.+|++|++++|.++.+ |..+..+++|+.|++++| .+..+|...+   ..+++|+.|++++|.+.
T Consensus        99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence             999 75 5788999999999999999977 567899999999999999 8999998755   57999999999999984


Q ss_pred             CCcchhhhhh
Q 039257          198 SQLKVSTWEN  207 (210)
Q Consensus       198 ~~~~~~~f~~  207 (210)
                       .++...|..
T Consensus       177 -~l~~~~~~~  185 (361)
T 2xot_A          177 -KLPLTDLQK  185 (361)
T ss_dssp             -CCCHHHHHH
T ss_pred             -ccCHHHhhh
Confidence             566655543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.74  E-value=2.8e-17  Score=127.65  Aligned_cols=138  Identities=24%  Similarity=0.286  Sum_probs=93.4

Q ss_pred             cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCE
Q 039257           63 KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQL  140 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~  140 (210)
                      ..+++++.|++++|.++.++....+++|++|+++ ++.++.+|.. +..+++|++|++++| .++ +| ..+.++++|++
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS-HNQLQSLPLL-GQTLPALTVLDVSFN-RLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC-SSCCSSCCCC-TTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCE
T ss_pred             hcCCCCCEEECCCCccCcccCCCCCCcCCEEECC-CCcCCcCchh-hccCCCCCEEECCCC-cCcccCHHHHcCCCCCCE
Confidence            3444555555555555555444556667777777 6667766665 567777777777777 777 54 56777777777


Q ss_pred             EeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhh
Q 039257          141 LDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTW  205 (210)
Q Consensus       141 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f  205 (210)
                      |++++|.++.+|.. +..+++|+.|++++| .++.+|..++..+++|++|++++|.+. .+|...|
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~  192 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence            77777777766644 466777777777777 677777665667777888888777774 5555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.73  E-value=9.8e-17  Score=124.54  Aligned_cols=149  Identities=22%  Similarity=0.176  Sum_probs=132.0

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      ..+.+.++.++.++....+++++.|++++|.++.++.. ..+++|+.|+++ ++.++.+++..|.++++|++|++++| .
T Consensus        58 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~L~~N-~  135 (290)
T 1p9a_G           58 TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELYLKGN-E  135 (290)
T ss_dssp             CEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEECTTS-C
T ss_pred             CEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEECCCC-C
Confidence            35667777888887778888999999999999988876 788999999999 99999999777999999999999999 9


Q ss_pred             ee-ec-ccccCCCcCCEEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          126 LK-FL-VGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       126 ~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      ++ +| ..+..+++|++|++++|.++.+|..+ ..+++|++|++++| .++.+|.. +..+++|+.+++++|++...
T Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~-~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG-FFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCCCSEEECCSCCBCCS
T ss_pred             CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChh-hcccccCCeEEeCCCCccCc
Confidence            99 75 55788999999999999999998654 78999999999999 89999997 78889999999999998654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=1.5e-16  Score=124.56  Aligned_cols=140  Identities=24%  Similarity=0.338  Sum_probs=83.7

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..+..++.+..+++++.|++++|.+..++....+++|+.|+++ ++.++.++.  +..+++|++|++++| .++
T Consensus        45 ~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l~~n-~l~  120 (308)
T 1h6u_A           45 TLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS-GNPLKNVSA--IAGLQSIKTLDLTST-QIT  120 (308)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECC-SCCCSCCGG--GTTCTTCCEEECTTS-CCC
T ss_pred             EEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEcc-CCcCCCchh--hcCCCCCCEEECCCC-CCC
Confidence            4455566666666666667777777777776665555556666666666 555666543  556666666666666 666


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                       ++. +..+++|++|++++|.++.++. +..+++|+.|++++| .+..++.  +..+++|++|++++|.+
T Consensus       121 ~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          121 DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCcc
Confidence             543 5555666666666665555543 455555555555555 4555544  45555555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=8.9e-17  Score=124.22  Aligned_cols=145  Identities=23%  Similarity=0.337  Sum_probs=66.8

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      .+.|.+..++.+|.. ..++++.|+++++.++.++..  ..+++|+.|+++ ++.++.+++..+..+++|++|++++| .
T Consensus        15 ~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~   91 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLSDN-A   91 (285)
T ss_dssp             EEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSC-T
T ss_pred             EEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECC-CCccceeCHhhcCCccCCCEEeCCCC-C
Confidence            345555555555531 224555555555555544321  444555555555 44444443333444555555555554 3


Q ss_pred             -ee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          126 -LK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       126 -~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                       ++ + |..+..+++|++|++++|.++.+ |..+..+++|++|++++| .++.++...++.+++|++|++++|.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcc
Confidence             44 3 34444444444444444444433 223344444444444444 34444433334444444444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.73  E-value=1.1e-16  Score=125.28  Aligned_cols=145  Identities=18%  Similarity=0.225  Sum_probs=105.0

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+.+..+..++.+..+++++.|++++|.++.++....+++|+.|+++ ++.++.++.  +..+++|++|++++| .+
T Consensus        66 ~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n-~l  141 (308)
T 1h6u_A           66 IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT-STQITDVTP--LAGLSNLQVLYLDLN-QI  141 (308)
T ss_dssp             CEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT-TSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred             CEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC-CCCCCCchh--hcCCCCCCEEECCCC-cc
Confidence            34566677777777777777888888888888777666777888888888 777777665  677778888888877 77


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                      + ++. ++.+++|++|++++|.++.++. +..+++|+.|++++| .++.++.  +..+++|++|++++|.+.+..
T Consensus       142 ~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          142 TNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             CCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred             CcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCccCccc
Confidence            7 654 6677777777777777776655 667777777777777 6666665  666777777777777664433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=1.1e-16  Score=123.12  Aligned_cols=155  Identities=22%  Similarity=0.272  Sum_probs=126.3

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.|.+..+..+|..- .+.++.|++++|.++.++.  ...+++|++|+++ ++.+..+++..|.++++|++|++++| 
T Consensus        10 ~~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n-   86 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-   86 (276)
T ss_dssp             TEEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred             ceEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCC-
Confidence            35678888888888632 2579999999999988764  3778999999999 88888888766889999999999999 


Q ss_pred             cee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeeccccCCC
Q 039257          125 NLK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       125 ~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      .++ + +..+.++++|++|++++|.++.++. .++.+++|++|++++| .+..  +|.. ++.+++|++|++++|.+. .
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~-~  163 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ-S  163 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC-E
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCC-c
Confidence            888 6 4778899999999999999887765 5788999999999999 6766  5664 889999999999999884 3


Q ss_pred             cchhhhhh
Q 039257          200 LKVSTWEN  207 (210)
Q Consensus       200 ~~~~~f~~  207 (210)
                      ++...|..
T Consensus       164 ~~~~~~~~  171 (276)
T 2z62_A          164 IYCTDLRV  171 (276)
T ss_dssp             ECGGGGHH
T ss_pred             CCHHHhhh
Confidence            44444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.73  E-value=1.1e-16  Score=123.70  Aligned_cols=130  Identities=23%  Similarity=0.332  Sum_probs=64.3

Q ss_pred             CCCccEEEeeccc-ccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCC
Q 039257           65 WENVRRLSLMQNQ-IETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQ  139 (210)
Q Consensus        65 ~~~l~~L~l~~~~-~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~  139 (210)
                      +++++.|++++|. +..++..  ..+++|++|+++ ++.+..+++..+..+++|++|++++| .++ ++ ..++.+++|+
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC-CCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCcc
Confidence            3444444444443 3333211  344455555555 44444444333445555555555555 555 33 3344555555


Q ss_pred             EEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          140 LLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       140 ~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      +|++++|.++.+|. .+..+++|+.|++++| .+..++...++.+++|+.|++++|.+.
T Consensus       157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCC
Confidence            55555555554443 2455555555555555 444442223555666666666666553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=7e-17  Score=136.91  Aligned_cols=156  Identities=21%  Similarity=0.236  Sum_probs=133.8

Q ss_pred             ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ...+.|.+.+++.+|... .++++.|++++|.++.++..  ..+++|++|+++ ++.++.+++..|.++++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCC
Confidence            456789999999999633 37899999999999987663  789999999999 88999887776899999999999999


Q ss_pred             ccee-e-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCC--CCCcccccCCCCCCeEEeeccccCC
Q 039257          124 WNLK-F-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLN--KIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                       .++ + |..++++++|++|++++|.++.+| ..++++++|++|++++| .+.  .+|.. ++++++|++|++++|.+.+
T Consensus        91 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           91 -PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             -CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred             -cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCccee
Confidence             898 6 889999999999999999998776 67899999999999999 666  46775 9999999999999998854


Q ss_pred             Ccchhhhhh
Q 039257          199 QLKVSTWEN  207 (210)
Q Consensus       199 ~~~~~~f~~  207 (210)
                       +++..|..
T Consensus       168 -~~~~~~~~  175 (606)
T 3vq2_A          168 -ITVNDLQF  175 (606)
T ss_dssp             -ECTTTTHH
T ss_pred             -cChhhhhh
Confidence             44444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.1e-16  Score=121.78  Aligned_cols=141  Identities=21%  Similarity=0.343  Sum_probs=95.0

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..+..++.+..+++++.|++++|.++.++....+++|+.|+++ ++.++.++.  +..+++|++|++++| .++
T Consensus        50 ~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~L~~n-~i~  125 (291)
T 1h6t_A           50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD-ENKVKDLSS--LKDLKKLKSLSLEHN-GIS  125 (291)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCGGG--GTTCTTCCEEECTTS-CCC
T ss_pred             EEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECC-CCcCCCChh--hccCCCCCEEECCCC-cCC
Confidence            4556666777777777777777888877777766656667777777777 666766554  667777777777777 666


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                       ++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++| .+..++.  +..+++|++|++++|.+.
T Consensus       126 ~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          126 DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC
Confidence             53 456666677777777766665 45566666666666666 5666654  566666666666666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=7.4e-17  Score=121.64  Aligned_cols=136  Identities=15%  Similarity=0.284  Sum_probs=69.9

Q ss_pred             CccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCC-CcccchhHhcCCCCCcEEecCC-cccee-ec-
Q 039257           56 LEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGE-LKMIADGFFQLMPSLKVLKMSN-CWNLK-FL-  129 (210)
Q Consensus        56 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~-l~-  129 (210)
                      ++.+|.  -...++.|++++|.++.++..  ..+++|+.|+++ ++. ++.+++..|.++++|++|++++ | .++ +| 
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDP   98 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEE-CCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCC-CCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCH
Confidence            445554  223566666666665555442  445566666665 443 5555554455566666666655 5 555 43 


Q ss_pred             ccccCCCcCCEEeccCCcCcccchhhhcCCCCc---EEEccCCCCCCCCCcccccCCCCCC-eEEeecccc
Q 039257          130 VGMSKLGSLQLLDISQNAIEELPEELKLLINLT---CLNLRGTGQLNKIPRQLISNFSRLR-GLRKFITCA  196 (210)
Q Consensus       130 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~~~~~~lp~~~~~~l~~L~-~L~l~~~~~  196 (210)
                      ..+.++++|++|++++|.++.+|. +..+++|+   .|++++|..++.+|...+..+++|+ .|++++|.+
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            345555555555555555555543 44444444   5555444334444443344444454 555544444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.6e-16  Score=133.62  Aligned_cols=156  Identities=22%  Similarity=0.268  Sum_probs=131.8

Q ss_pred             cccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257           45 KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN  122 (210)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  122 (210)
                      ....+.|.+.+++.+|.. -.+.++.|++++|.++.++..  ..+++|++|+++ ++.+..+++..|.++++|++|++++
T Consensus         8 ~~~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            8 PNITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTTEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCcEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECC-CCcCCccCcccccCchhCCEEeCcC
Confidence            345788888899999863 236899999999999887643  789999999999 8889988877789999999999999


Q ss_pred             cccee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeeccccC
Q 039257          123 CWNLK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       123 ~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      | .++ + |..++++.+|++|++++|.++.+|. .++++++|++|++++| .+..  +|.. ++++++|++|++++|.+.
T Consensus        86 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A           86 N-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             C-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred             C-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence            9 898 6 5789999999999999999998875 5889999999999999 6665  6775 999999999999999884


Q ss_pred             CCcchhhhh
Q 039257          198 SQLKVSTWE  206 (210)
Q Consensus       198 ~~~~~~~f~  206 (210)
                      + +++..|.
T Consensus       163 ~-~~~~~~~  170 (570)
T 2z63_A          163 S-IYCTDLR  170 (570)
T ss_dssp             E-ECGGGGH
T ss_pred             e-ecHHHcc
Confidence            4 4444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1.7e-16  Score=118.41  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=116.5

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCC
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQN  146 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~  146 (210)
                      +.++..++.++.+|.... +.++.|+++ ++.++.+++..|..+++|++|++++| .++ + |..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence            568888888888877532 789999999 99999999876899999999999999 999 6 789999999999999999


Q ss_pred             cCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          147 AIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       147 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      .++.+|.. +..+++|+.|++++| .+..++...+..+++|++|++++|.+. .++...|..+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l  151 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPL  151 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTC
T ss_pred             cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCC
Confidence            99999876 478999999999999 888887666999999999999999985 4455555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.71  E-value=2e-16  Score=129.43  Aligned_cols=140  Identities=24%  Similarity=0.335  Sum_probs=70.6

Q ss_pred             cCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257           63 KEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ  139 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  139 (210)
                      ..+++|+.|++++|.++.++..  ..+++|+.|++++++.+..++...|.++++|++|++++| .++ +| .+..+.+|+
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~  210 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLD  210 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCC
T ss_pred             hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccC
Confidence            3344444444444444443331  334444444444223444444433444555555555555 554 44 244455555


Q ss_pred             EEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257          140 LLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE  206 (210)
Q Consensus       140 ~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~  206 (210)
                      +|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+. .++...|.
T Consensus       211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~  276 (440)
T 3zyj_A          211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFT  276 (440)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTS
T ss_pred             EEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhc
Confidence            555555555544 344555666666666666 555554444566666666666666653 34444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=1.2e-16  Score=117.16  Aligned_cols=131  Identities=17%  Similarity=0.268  Sum_probs=116.2

Q ss_pred             cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCE
Q 039257           63 KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQL  140 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~  140 (210)
                      ..+++++.|+++++.+..++....+++|++|+++ ++.+..++.  +..+++|++|++++| .++  .+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~-~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTIN-NIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEE-SCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEcc-CCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence            4557899999999999988866889999999999 778877764  889999999999999 888  5888999999999


Q ss_pred             EeccCCcCcc-cchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          141 LDISQNAIEE-LPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       141 L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      |++++|.++. .|..++.+++|++|++++|..++.+|.  +..+++|++|++++|.+...
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh
Confidence            9999999984 678889999999999999943899984  89999999999999998653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2e-16  Score=122.82  Aligned_cols=143  Identities=21%  Similarity=0.312  Sum_probs=128.7

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+.++.++.++.+..+++++.|++.+|.++.++....+++|+.|+++ ++.+..++.  +..+++|+.|++++| .+
T Consensus        71 ~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~i~~~~~--l~~l~~L~~L~l~~n-~l  146 (291)
T 1h6t_A           71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE-HNGISDING--LVHLPQLESLYLGNN-KI  146 (291)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT-TSCCCCCGG--GGGCTTCCEEECCSS-CC
T ss_pred             CEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECC-CCcCCCChh--hcCCCCCCEEEccCC-cC
Confidence            35677788888888888889999999999999988878889999999999 888998864  789999999999999 99


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      + + ..++.+++|++|++++|.++.++. +..+++|+.|++++| .++.+|.  +..+++|+.|++++|.+..
T Consensus       147 ~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~--l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          147 TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred             Ccc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC-cCCCChh--hccCCCCCEEECcCCcccC
Confidence            9 8 578899999999999999998876 899999999999999 8999975  8999999999999998743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=127.48  Aligned_cols=149  Identities=23%  Similarity=0.298  Sum_probs=115.2

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      ...+.+..++.+|.. -.++++.|++++|.++.++.  ...+++|++|+++ ++.++.+++..|.++++|++|++++| .
T Consensus        35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~  111 (353)
T 2z80_A           35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYN-Y  111 (353)
T ss_dssp             EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred             EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECC-CCccCccCHhhcCCCCCCCEEECCCC-c
Confidence            356667788888753 23578899999998888765  3778888888888 77888777665788888888888888 8


Q ss_pred             ee-eccc-ccCCCcCCEEeccCCcCcccch--hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          126 LK-FLVG-MSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       126 ~~-l~~~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      ++ +|.. ++++++|++|++++|.++.+|.  .+..+++|++|++++|..++.++...++.+++|++|++++|.+.+.
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            88 7644 7788888888888888888776  5678888888888888556776554477888888888888877443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.70  E-value=6.9e-17  Score=121.79  Aligned_cols=142  Identities=20%  Similarity=0.279  Sum_probs=84.9

Q ss_pred             EEEecCCCCccCCC--ccCCCCccEEEeeccc-ccccCCC--CCCCCccEEEcccC-CCCcccchhHhcCCCCCcEEecC
Q 039257           48 FLVCAGAGLEEAPD--VKEWENVRRLSLMQNQ-IETLSEV--PTCPHFVTLFLDFN-GELKMIADGFFQLMPSLKVLKMS  121 (210)
Q Consensus        48 ~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~-~~~l~~~--~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~  121 (210)
                      .+.+.+..++.+|.  +..+++++.|++++|. ++.++..  ..+++|++|+++ + +.++.+++..|.++++|++|+++
T Consensus        35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~-~~n~l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR-NTRNLTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE-EETTCCEECTTSEECCTTCCEEEEE
T ss_pred             EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC-CCCCeeEcCHHHhCCCCCCCEEeCC
Confidence            45556666666654  5566778888888885 7766643  567778888887 5 77777776557777777777777


Q ss_pred             Ccccee-ecccccCCCcCC---EEeccCC-cCcccchh-hhcCCCCc-EEEccCCCCCCCCCcccccCCCCCCeEEeecc
Q 039257          122 NCWNLK-FLVGMSKLGSLQ---LLDISQN-AIEELPEE-LKLLINLT-CLNLRGTGQLNKIPRQLISNFSRLRGLRKFIT  194 (210)
Q Consensus       122 ~~~~~~-l~~~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~  194 (210)
                      +| .++ +|. +..+.+|+   +|++++| .++.+|.. +..+++|+ .|++++| .++.+|...+.. ++|+.|++++|
T Consensus       114 ~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          114 NT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTTC
T ss_pred             CC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCCC
Confidence            77 666 654 44444444   5555555 55544432 44455555 5555554 444444432222 44444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=3.9e-16  Score=119.52  Aligned_cols=143  Identities=18%  Similarity=0.286  Sum_probs=120.0

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+.+..++.++.+..+++++.|++++|.++.++....+++|+.|+++ ++.++.++.  +.. ++|++|++++| .+
T Consensus        44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~-~N~l~~l~~--~~~-~~L~~L~L~~N-~l  118 (263)
T 1xeu_A           44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN-RNRLKNLNG--IPS-ACLSRLFLDNN-EL  118 (263)
T ss_dssp             SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC-SSCCSCCTT--CCC-SSCCEEECCSS-CC
T ss_pred             cEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC-CCccCCcCc--ccc-CcccEEEccCC-cc
Confidence            35667778888888888888999999999998887777788899999999 888888876  334 88999999999 88


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      + ++ .+..+++|++|++++|.++.+| .+..+++|+.|++++| .+..++.  +..+++|+.|++++|.+...
T Consensus       119 ~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          119 RDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCTT--STTCCCCCEEEEEEEEEECC
T ss_pred             CCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchHH--hccCCCCCEEeCCCCcccCC
Confidence            8 76 5888999999999999998886 6888999999999999 7888743  88999999999999987543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.69  E-value=4.1e-16  Score=128.05  Aligned_cols=147  Identities=25%  Similarity=0.314  Sum_probs=99.7

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.|.+..++.+|..- .++++.|++++|.++.++..  ..+++|+.|+++ ++.+..+++..|.++++|++|++++| 
T Consensus        57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n-  133 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG-RNSIRQIEVGAFNGLASLNTLELFDN-  133 (452)
T ss_dssp             CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred             cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECC-CCccCCcChhhccCcccCCEEECCCC-
Confidence            35677888888888532 36788999999988876433  778888888888 78888777666788888888888888 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      .++ +| ..+..+++|++|++++|.++.+|. .+.++++|+.|++++|..++.++...+..+++|++|++++|.+
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            888 64 457778888888888888776654 3445555555555554344444443344444444444444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.69  E-value=5e-16  Score=127.53  Aligned_cols=152  Identities=20%  Similarity=0.277  Sum_probs=78.8

Q ss_pred             EecCCCCccCC--CccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchh------------------
Q 039257           50 VCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADG------------------  107 (210)
Q Consensus        50 ~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~------------------  107 (210)
                      .+.++.+..++  .+..+++|+.|++++|.++.++..  ..+++|+.|+++ ++.+..++..                  
T Consensus       105 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~~~~  183 (452)
T 3zyi_A          105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGELKK  183 (452)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred             ECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHHhcCCcccEEeCCCCCC
Confidence            33444444333  233444555555555555544432  344555555555 4444444443                  


Q ss_pred             -------HhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257          108 -------FFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQ  178 (210)
Q Consensus       108 -------~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~  178 (210)
                             .|.++++|++|++++| .++ +| .+..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..++..
T Consensus       184 l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~  260 (452)
T 3zyi_A          184 LEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERN  260 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTT
T ss_pred             ccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHH
Confidence                   3444445555555555 444 43 244455555555555555544 345566666666666666 55555444


Q ss_pred             cccCCCCCCeEEeeccccCCCcchhhhh
Q 039257          179 LISNFSRLRGLRKFITCASSQLKVSTWE  206 (210)
Q Consensus       179 ~~~~l~~L~~L~l~~~~~~~~~~~~~f~  206 (210)
                      .+..+++|+.|++++|.+. .++...|.
T Consensus       261 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~  287 (452)
T 3zyi_A          261 AFDGLASLVELNLAHNNLS-SLPHDLFT  287 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCS-CCCTTSST
T ss_pred             HhcCCCCCCEEECCCCcCC-ccChHHhc
Confidence            4666677777777766663 44444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.69  E-value=6.2e-16  Score=126.57  Aligned_cols=146  Identities=25%  Similarity=0.332  Sum_probs=98.0

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.|.+..++.+|..- .+.++.|++++|.++.++..  ..+++|+.|+++ ++.+..+++..|.++++|++|++++| 
T Consensus        46 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n-  122 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS-RNHIRTIEIGAFNGLANLNTLELFDN-  122 (440)
T ss_dssp             CEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECC-SSCCCEECGGGGTTCSSCCEEECCSS-
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECC-CCcCCccChhhccCCccCCEEECCCC-
Confidence            35678888888888533 26788888888888876533  777888888888 77788777666788888888888888 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC  195 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  195 (210)
                      .++ +| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|..+..++...+..+++|++|++++|.
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            887 65 467778888888888887776653 344555555555555434444444334444444444444433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.69  E-value=5.8e-16  Score=127.80  Aligned_cols=156  Identities=24%  Similarity=0.290  Sum_probs=115.6

Q ss_pred             ccEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ...+.|.+..++.+|..- ...++.|++++|.++.++.  ...+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECC-CCccCEeChhhhhCCccCCEEECCCC
Confidence            346778888888888532 3578889999988887643  3778888888888 77888776655888888888888888


Q ss_pred             ccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257          124 WNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                       .++ +| ..+.++++|++|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|++|++++|.+. .+
T Consensus        91 -~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  167 (477)
T 2id5_A           91 -RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT-SI  167 (477)
T ss_dssp             -CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-SC
T ss_pred             -cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc-cc
Confidence             888 75 4567888888888888887755 456777888888888887 666665544777788888888777763 34


Q ss_pred             chhhhh
Q 039257          201 KVSTWE  206 (210)
Q Consensus       201 ~~~~f~  206 (210)
                      +...|.
T Consensus       168 ~~~~l~  173 (477)
T 2id5_A          168 PTEALS  173 (477)
T ss_dssp             CHHHHT
T ss_pred             ChhHhc
Confidence            444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=4.5e-16  Score=127.57  Aligned_cols=155  Identities=22%  Similarity=0.290  Sum_probs=129.1

Q ss_pred             ccccccEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEE
Q 039257           42 EKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVL  118 (210)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L  118 (210)
                      |......+.|.+.+++.+|.  -.+++++|++++|.++.++.  ...+++|++|+++ .+.+. .+++..|.++++|++|
T Consensus         8 c~~~~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~l~~L~~L   84 (455)
T 3v47_A            8 CSVIGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE-QQTPGLVIRNNTFRGLSSLIIL   84 (455)
T ss_dssp             CEEETTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECC-CCSTTCEECTTTTTTCTTCCEE
T ss_pred             eEEEccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECc-CCcccceECcccccccccCCEE
Confidence            33345568899999999997  34789999999999988633  3889999999999 77665 6776668999999999


Q ss_pred             ecCCcccee-e-cccccCCCcCCEEeccCCcCcc-cchh--hhcCCCCcEEEccCCCCCCCC-CcccccCCCCCCeEEee
Q 039257          119 KMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEE-LPEE--LKLLINLTCLNLRGTGQLNKI-PRQLISNFSRLRGLRKF  192 (210)
Q Consensus       119 ~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~  192 (210)
                      ++++| .++ + |..++++++|++|++++|.++. .|..  +..+++|++|++++| .+..+ |..+++.+++|++|+++
T Consensus        85 ~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A           85 KLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             ECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECT
T ss_pred             eCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCC
Confidence            99999 888 5 8899999999999999999884 4444  889999999999999 67766 54447899999999999


Q ss_pred             ccccCCCcc
Q 039257          193 ITCASSQLK  201 (210)
Q Consensus       193 ~~~~~~~~~  201 (210)
                      +|.+.+..+
T Consensus       163 ~n~l~~~~~  171 (455)
T 3v47_A          163 FNKVKSICE  171 (455)
T ss_dssp             TCCBSCCCT
T ss_pred             CCcccccCh
Confidence            999865544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2.1e-16  Score=120.96  Aligned_cols=139  Identities=19%  Similarity=0.219  Sum_probs=122.3

Q ss_pred             ecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec
Q 039257           51 CAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL  129 (210)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~  129 (210)
                      +.+..++.++.+..+++++.|++.+|.++.++....+++|+.|+++ ++.++.+++  +..+++|++|++++| .++ +|
T Consensus        26 l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~-~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~  101 (263)
T 1xeu_A           26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS-HNQISDLSP--LKDLTKLEELSVNRN-RLKNLN  101 (263)
T ss_dssp             HTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEECCSS-CCSCCT
T ss_pred             hcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECC-CCccCCChh--hccCCCCCEEECCCC-ccCCcC
Confidence            3445666677777788999999999999998876889999999999 999999888  889999999999999 999 87


Q ss_pred             ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          130 VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       130 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      ....  .+|++|++++|.++.+| .+..+++|+.|++++| .++.++.  ++.+++|++|++++|.+.+.
T Consensus       102 ~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          102 GIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             TCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred             cccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch
Confidence            5433  89999999999999885 5889999999999999 8999974  89999999999999998655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=3.8e-16  Score=121.79  Aligned_cols=146  Identities=21%  Similarity=0.226  Sum_probs=104.6

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCccc---chhHhcCCCCCcEEecCC
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMI---ADGFFQLMPSLKVLKMSN  122 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~  122 (210)
                      .+.|.+..++.+|.. ..+++++|++++|.++.++..  ..+++|+.|+++ ++.+..+   +.. +..+++|++|++++
T Consensus        11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~-~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQS-DFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCEEEEEEHH-HHSCSCCCEEECCS
T ss_pred             EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECC-CCccCcccCcccc-cccccccCEEECCC
Confidence            567888888888853 236889999999988887764  678889999998 7777755   333 56788888888888


Q ss_pred             cccee-ecccccCCCcCCEEeccCCcCcccch--hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257          123 CWNLK-FLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       123 ~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      | .+. +|..+..+++|++|++++|.++.++.  .+..+++|++|++++| .+...+...+..+++|++|++++|.+.+
T Consensus        88 n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           88 N-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             C-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             C-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccc
Confidence            8 888 77777778888888888887776653  5666777777777777 4444433335566666666666665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=4.4e-16  Score=113.75  Aligned_cols=131  Identities=18%  Similarity=0.241  Sum_probs=93.2

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchh-HhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccC
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADG-FFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQ  145 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~  145 (210)
                      +.++++++.++.+|... ..+++.|+++ ++.++.+++. .|..+++|++|++++| .++ + |..+.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~-~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLN-DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECC-SCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECC-CCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence            46667777776666542 2367777887 7777776653 3677888888888888 777 5 67777788888888888


Q ss_pred             CcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchh
Q 039257          146 NAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVS  203 (210)
Q Consensus       146 ~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~  203 (210)
                      |.++.++. .+..+++|++|++++| .++.+++..+..+++|++|++++|++.+..+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  145 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence            88776654 3677788888888888 666654444777888888888888877665543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=8.9e-16  Score=134.98  Aligned_cols=152  Identities=17%  Similarity=0.176  Sum_probs=128.8

Q ss_pred             ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      +..+.|.+..++.+|.  .+++++.|++++|.++.+...  ..+++|++|+++++..+..+++..|.++++|++|++++|
T Consensus         6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            4678899999999997  568999999999999886433  889999999999444677886666999999999999999


Q ss_pred             ccee-e-cccccCCCcCCEEeccCCcCcc-cchh--hhcCCCCcEEEccCCCCCCCCC-cccccCCCCCCeEEeeccccC
Q 039257          124 WNLK-F-LVGMSKLGSLQLLDISQNAIEE-LPEE--LKLLINLTCLNLRGTGQLNKIP-RQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~lp-~~~~~~l~~L~~L~l~~~~~~  197 (210)
                       .++ + |..++++++|++|++++|.++. +|..  ++++++|++|++++| .+..++ ...++++++|++|++++|.+.
T Consensus        84 -~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           84 -KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             -CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             -cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence             898 5 8999999999999999999884 5554  889999999999999 666653 234899999999999999886


Q ss_pred             CCcc
Q 039257          198 SQLK  201 (210)
Q Consensus       198 ~~~~  201 (210)
                      +..+
T Consensus       162 ~~~~  165 (844)
T 3j0a_A          162 LVCE  165 (844)
T ss_dssp             CCCS
T ss_pred             eeCH
Confidence            5443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=8.4e-16  Score=115.29  Aligned_cols=135  Identities=19%  Similarity=0.282  Sum_probs=115.8

Q ss_pred             ccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccC
Q 039257           68 VRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQ  145 (210)
Q Consensus        68 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~  145 (210)
                      .+.++.+++.+..+|... .++|+.|+++ ++.+..+++..|.++++|++|++++| .++ +| ..+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI-PTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC-CCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence            456888888888887753 3889999999 99999887776899999999999999 999 76 5678999999999999


Q ss_pred             CcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          146 NAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       146 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      |.++.+|.. +..+++|+.|++++| .++.+|.. +..+++|++|++++|.+. .++...|..+
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~-~~~~~~~~~l  158 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK-SIPHGAFDRL  158 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC-CCCTTTTTTC
T ss_pred             CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC-ccCHHHHhCC
Confidence            999988765 588999999999999 89999986 899999999999999885 5565556543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=3.6e-16  Score=120.27  Aligned_cols=127  Identities=25%  Similarity=0.340  Sum_probs=93.7

Q ss_pred             EEEecCCCCccCC--CccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           48 FLVCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        48 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      .+.+.+..++.++  .+..+++++.|++++|.+..++.  ...+++|++|+++ ++.+..+++..+.++++|++|++++|
T Consensus        32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n  110 (276)
T 2z62_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET  110 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcCCccccEEECCCC
Confidence            4556666666665  35666788888888888877654  3667888888888 77777777655778888888888888


Q ss_pred             ccee-ec-ccccCCCcCCEEeccCCcCcc--cchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257          124 WNLK-FL-VGMSKLGSLQLLDISQNAIEE--LPEELKLLINLTCLNLRGTGQLNKIPR  177 (210)
Q Consensus       124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~  177 (210)
                       .+. ++ ..++.+++|++|++++|.++.  +|..+..+++|++|++++| .++.++.
T Consensus       111 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~  166 (276)
T 2z62_A          111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC  166 (276)
T ss_dssp             -CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred             -CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCH
Confidence             777 54 467778888888888887775  5777778888888888877 6665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.68  E-value=7.9e-16  Score=130.44  Aligned_cols=157  Identities=18%  Similarity=0.137  Sum_probs=129.2

Q ss_pred             ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ...+.|.+.+++.+|..- ...++.|++++|.++.++..  ..+++|++|+++ ++.+..+.+..|.++++|++|++++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT-RCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECC-CCccceeChhhccCccccCeeeCCCC
Confidence            456788888999988633 25799999999999987543  889999999999 88888887666899999999999999


Q ss_pred             ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257          124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                       .+. + |..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+. .+
T Consensus        92 -~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~  168 (606)
T 3t6q_A           92 -PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH-YL  168 (606)
T ss_dssp             -CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC-EE
T ss_pred             -cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc-cc
Confidence             888 5 78899999999999999999977 567889999999999999 777763222566999999999999884 44


Q ss_pred             chhhhhh
Q 039257          201 KVSTWEN  207 (210)
Q Consensus       201 ~~~~f~~  207 (210)
                      ++..|..
T Consensus       169 ~~~~~~~  175 (606)
T 3t6q_A          169 SKEDMSS  175 (606)
T ss_dssp             CHHHHHT
T ss_pred             Chhhhhh
Confidence            4444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=111.44  Aligned_cols=127  Identities=17%  Similarity=0.254  Sum_probs=97.0

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCC
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQN  146 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~  146 (210)
                      +.++++++.++.+|... .++++.|+++ ++.++.+|.. |..+++|++|++++| .++ + +..+.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~-~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLD-GNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECC-SSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECC-CCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence            45666677776666542 2578888888 7778888754 788888888888888 888 6 466788888888888888


Q ss_pred             cCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257          147 AIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       147 ~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                      .++.+|. .+..+++|++|++++| .++.+|...+..+++|+.|++++|++..+-
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            8887764 5778888888888888 778888766778888888888888876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.67  E-value=5.7e-16  Score=124.78  Aligned_cols=140  Identities=15%  Similarity=0.213  Sum_probs=109.1

Q ss_pred             CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCC
Q 039257           64 EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQ  139 (210)
Q Consensus        64 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~  139 (210)
                      .+.+++.+++.++.++.+|..  ..+++|++|+++ ++.+..+++..|..+++|++|++++| .++ + |..++++++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECC-CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence            456788888888888887764  667888888888 77788877755788888888888888 888 5 56678888888


Q ss_pred             EEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          140 LLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      +|++++|.++.+|..+ ..+++|++|++++| .+..++...++.+++|++|++++|.+.. ++...+++
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~  187 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPS  187 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTT
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc-cccccccc
Confidence            8888888888887664 78888888888888 7777766557888888888888887743 34444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=9.1e-16  Score=130.09  Aligned_cols=140  Identities=22%  Similarity=0.327  Sum_probs=80.9

Q ss_pred             EEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257           49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-  127 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-  127 (210)
                      +.+.++.+..++.+..+++|+.|++++|.+..++....+++|+.|+++ .+.+..++.  +..+++|+.|++++| .++ 
T Consensus        70 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~  145 (605)
T 1m9s_A           70 LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE-HNGISDING--LVHLPQLESLYLGNN-KITD  145 (605)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT-TSCCCCCGG--GGGCTTCSEEECCSS-CCCC
T ss_pred             EEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEec-CCCCCCCcc--ccCCCccCEEECCCC-ccCC
Confidence            344444444444444555555555555555555544555566666666 555555543  555666666666666 555 


Q ss_pred             ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          128 FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       128 l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      + ..++.+++|+.|++++|.++.++. +..+++|+.|++++| .+..+|.  +..+++|+.|++++|.+.
T Consensus       146 l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~--l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          146 I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCSEEEE
T ss_pred             c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CCCCChH--HccCCCCCEEEccCCcCc
Confidence            5 345566666666666666665544 566666666666666 5566543  666666666666666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=6.5e-16  Score=120.50  Aligned_cols=148  Identities=20%  Similarity=0.294  Sum_probs=86.4

Q ss_pred             EEecCCCCccCCC-ccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           49 LVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        49 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      +.+.+..+..+|. +..+++++.|++++|.+..++.   ...+++|+.|+++ ++.+...++..+..+++|++|++++| 
T Consensus        83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-  160 (306)
T 2z66_A           83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGN-  160 (306)
T ss_dssp             EECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-TSCCEECSTTTTTTCTTCCEEECTTC-
T ss_pred             EECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC-CCcCCccchhhcccCcCCCEEECCCC-
Confidence            3444444444432 3445566666666666665543   2556666666666 55555554444566666666666666 


Q ss_pred             cee---ecccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          125 NLK---FLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       125 ~~~---l~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      .++   +|..+..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+.+.
T Consensus       161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCccc
Confidence            554   355566666666666666666654 445556666666666666 55555543355666666666666665443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.67  E-value=1.3e-15  Score=130.81  Aligned_cols=150  Identities=19%  Similarity=0.221  Sum_probs=127.8

Q ss_pred             ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ...+.|.+..++.+|..- .++++.|++++|.++.++..  ..+++|++|+++ ++.+..+++..+.++++|++|++++|
T Consensus         6 ~~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SSEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CCeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCC
Confidence            346888999999988533 36899999999999887753  778999999999 88898887777899999999999999


Q ss_pred             ccee-ecc-cccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          124 WNLK-FLV-GMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       124 ~~~~-l~~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                       .++ +|. .++++.+|++|++++|.++.+| ..++++++|++|++++| .+...+...++++++|++|++++|.+.+.
T Consensus        84 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           84 -ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             -CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             -ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc
Confidence             999 864 6899999999999999998876 56889999999999999 66666554588999999999999987544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.9e-16  Score=113.03  Aligned_cols=127  Identities=22%  Similarity=0.262  Sum_probs=109.1

Q ss_pred             CCccEEEeeccccc--ccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCE
Q 039257           66 ENVRRLSLMQNQIE--TLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQL  140 (210)
Q Consensus        66 ~~l~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~  140 (210)
                      ++++.|++++|.+.  .++.. ..+++|+.|+++ ++.++.+ .. +..+++|++|++++| .++  +|..+..+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISV-SN-LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCC-SS-CCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCCh-hh-hccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence            67999999999988  67776 778999999999 8888887 33 788999999999999 888  5666777999999


Q ss_pred             EeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEeeccccC
Q 039257          141 LDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       141 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~~~~~~  197 (210)
                      |++++|.++.+|  ..+..+++|++|++++| .+..+|.   ..+..+++|++|++++|...
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999999876  67889999999999999 7888876   34889999999999998873

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.5e-15  Score=113.27  Aligned_cols=136  Identities=17%  Similarity=0.274  Sum_probs=113.3

Q ss_pred             ccEEEeecccccccCCCCCCCCccEEEcccCCCCcccc-hhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEecc
Q 039257           68 VRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIA-DGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDIS  144 (210)
Q Consensus        68 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~  144 (210)
                      -+.++++++.++.+|... ...++.|+++ ++.++.++ ...|..+++|++|++++| .++ ++ ..+.++++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~-~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI-PQYTAELRLN-NNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCccCC-CCCCCEEEcC-CCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence            357899999998887642 3467899999 89999874 455789999999999999 999 75 589999999999999


Q ss_pred             CCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          145 QNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       145 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      +|.++.+|. .+..+++|++|++++| .+..+++..+..+++|++|++++|.+.+ +++..|..+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l  152 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTL  152 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCC
Confidence            999998865 4789999999999999 7888865559999999999999999855 444555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.67  E-value=1.5e-15  Score=109.28  Aligned_cols=130  Identities=18%  Similarity=0.275  Sum_probs=105.5

Q ss_pred             ccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccC
Q 039257           68 VRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQ  145 (210)
Q Consensus        68 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~  145 (210)
                      .+.+++.++.++.+|.. ..++++.|+++ ++.++.+++..+..+++|++|++++| .++ +| ..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG-IPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT-CCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC-CCCCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence            35667777777766643 23678899998 88888888776788999999999999 888 75 4568889999999999


Q ss_pred             CcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          146 NAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       146 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      |.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|++.+..+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            998887764 578899999999999 7888888756889999999999999877665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.66  E-value=1.2e-15  Score=125.08  Aligned_cols=134  Identities=23%  Similarity=0.260  Sum_probs=119.9

Q ss_pred             CCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEE
Q 039257           66 ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLL  141 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L  141 (210)
                      ..++.+++.+|.+..+...  ..+++|+.|+++ ++.+..+++..+..+++|++|++++| .++ + |..+.++++|++|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEE
Confidence            5799999999999875433  778999999999 88999887766899999999999999 998 6 6888999999999


Q ss_pred             eccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcch
Q 039257          142 DISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKV  202 (210)
Q Consensus       142 ~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~  202 (210)
                      ++++|.++.+ |..+..+++|++|++++| .++.+|...+..+++|+.|++++|++.+..|.
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999976 678899999999999999 88999887678999999999999999988874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=1.7e-15  Score=128.51  Aligned_cols=143  Identities=20%  Similarity=0.337  Sum_probs=126.7

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..+..++.+..++.|+.|++++|.+..++....+++|+.|+++ .+.+..++.  +..+++|+.|++++| .++
T Consensus        47 ~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~  122 (605)
T 1m9s_A           47 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD-ENKIKDLSS--LKDLKKLKSLSLEHN-GIS  122 (605)
T ss_dssp             CCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC-SSCCCCCTT--STTCTTCCEEECTTS-CCC
T ss_pred             EEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECc-CCCCCCChh--hccCCCCCEEEecCC-CCC
Confidence            3456677888888888999999999999999988777889999999999 888988774  889999999999999 998


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                       ++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..+++  +..+++|+.|++++|.+.+.
T Consensus       123 ~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          123 DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             CCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCCC
Confidence             75 588899999999999999988 67889999999999999 8888876  89999999999999988553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=2e-16  Score=113.88  Aligned_cols=129  Identities=21%  Similarity=0.249  Sum_probs=110.5

Q ss_pred             cCCCCccEEEeecccccccCCCCCCC-CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccc-cCCCcCC
Q 039257           63 KEWENVRRLSLMQNQIETLSEVPTCP-HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGM-SKLGSLQ  139 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~-~~l~~L~  139 (210)
                      ....+++.|++.+|.++.++....+. +|+.|+++ ++.++.++.  +..+++|++|++++| .++ +|..+ +.+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFS-DNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECC-SSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECC-CCCCCcccc--cccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence            34468999999999999887665544 99999999 888988843  889999999999999 999 87554 8899999


Q ss_pred             EEeccCCcCcccch--hhhcCCCCcEEEccCCCCCCCCCcc---cccCCCCCCeEEeecccc
Q 039257          140 LLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQ---LISNFSRLRGLRKFITCA  196 (210)
Q Consensus       140 ~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l~~~~~  196 (210)
                      +|++++|.++.+|.  .+..+++|+.|++++| .+..+|..   .++.+++|+.|++++|..
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999999998887  7889999999999999 77888863   378899999999988875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=6.6e-16  Score=123.38  Aligned_cols=149  Identities=23%  Similarity=0.299  Sum_probs=127.9

Q ss_pred             EEEecCCCCccCCCc--c-CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257           48 FLVCAGAGLEEAPDV--K-EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN  122 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~--~-~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  122 (210)
                      .+.+.++.++.++..  . .+.+|+.|++++|.++.++..  ..+++|+.|+++ +|.++.+++..|.++++|++|++++
T Consensus        43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~  121 (361)
T 2xot_A           43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEVLLLYN  121 (361)
T ss_dssp             EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHHHhCCCcCCCEEECCC
Confidence            567777777777642  2 678999999999999988753  788999999999 8999999987789999999999999


Q ss_pred             cccee-e-cccccCCCcCCEEeccCCcCcccchhh----hcCCCCcEEEccCCCCCCCCCcccccCCCC--CCeEEeecc
Q 039257          123 CWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEEL----KLLINLTCLNLRGTGQLNKIPRQLISNFSR--LRGLRKFIT  194 (210)
Q Consensus       123 ~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~--L~~L~l~~~  194 (210)
                      | .++ + |..+.++++|++|++++|.++.+|..+    ..+++|+.|++++| .++.+|...+..++.  ++.|++++|
T Consensus       122 N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          122 N-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             C-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCC
Confidence            9 999 6 688999999999999999999998765    57999999999999 899999766778877  489999999


Q ss_pred             ccCCC
Q 039257          195 CASSQ  199 (210)
Q Consensus       195 ~~~~~  199 (210)
                      ++..+
T Consensus       200 ~~~C~  204 (361)
T 2xot_A          200 PLECD  204 (361)
T ss_dssp             CEECC
T ss_pred             CccCC
Confidence            98654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=6.4e-16  Score=129.51  Aligned_cols=150  Identities=19%  Similarity=0.250  Sum_probs=125.2

Q ss_pred             EEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+..++.+|..- .+.+++|++++|.++.++.  ...+++|++|+++ ++.+..+++..|..+++|++|++++| .+
T Consensus        10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDN-HL   86 (549)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred             EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECC-CCCcCccChhhccccccCCEEECCCC-cc
Confidence            455677888888633 3789999999999988643  3788999999999 88898888766899999999999999 99


Q ss_pred             e-ec-ccccCCCcCCEEeccCCcCcc--cchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          127 K-FL-VGMSKLGSLQLLDISQNAIEE--LPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       127 ~-l~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      + ++ ..++++++|++|++++|.++.  .|..++++++|++|++++|..++.+|...++.+++|++|++++|.+.+..|
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            8 65 558999999999999999884  467788999999999999955788876558899999999999998865444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.65  E-value=1e-15  Score=121.77  Aligned_cols=154  Identities=18%  Similarity=0.202  Sum_probs=127.4

Q ss_pred             cEEEecCCCCccCCC--ccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257           47 NFLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN  122 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  122 (210)
                      ..+.+.+..++.++.  +..+++++.|++++|.++.++.  ...+++|++|+++ ++.++.++...+.++++|++|++++
T Consensus        55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~  133 (353)
T 2z80_A           55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFLNLLG  133 (353)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred             cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC-CCcCCcCCHhHhCCCccCCEEECCC
Confidence            356677777777765  6778899999999999988754  3788999999999 9999999988789999999999999


Q ss_pred             cccee-ecc--cccCCCcCCEEeccCC-cCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          123 CWNLK-FLV--GMSKLGSLQLLDISQN-AIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       123 ~~~~~-l~~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      | .++ +|.  .+.++++|++|++++| .++.++ ..+..+++|+.|++++| .+..++...++.+++|++|++++|.+ 
T Consensus       134 n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l-  210 (353)
T 2z80_A          134 N-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQH-  210 (353)
T ss_dssp             C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCS-
T ss_pred             C-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCcc-
Confidence            9 999 875  7889999999999998 577664 57889999999999999 67666433488899999999988887 


Q ss_pred             CCcchhh
Q 039257          198 SQLKVST  204 (210)
Q Consensus       198 ~~~~~~~  204 (210)
                      +.++...
T Consensus       211 ~~~~~~~  217 (353)
T 2z80_A          211 ILLLEIF  217 (353)
T ss_dssp             TTHHHHH
T ss_pred             ccchhhh
Confidence            4455443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.64  E-value=6.1e-15  Score=116.79  Aligned_cols=142  Identities=19%  Similarity=0.273  Sum_probs=103.5

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..+..++.+..++++++|++++|.++.++....+++|++|+++ ++.++.++.  +..+++|++|++++| .++
T Consensus        48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~l~~n-~i~  123 (347)
T 4fmz_A           48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG-TNKITDISA--LQNLTNLRELYLNED-NIS  123 (347)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred             EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEcc-CCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence            4566777777888888888888888888888877767778888888888 777877764  788888888888888 777


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                       ++. +..+++|++|++++|.....+..+..+++|++|++++| .+..++.  +..+++|++|++++|.+.
T Consensus       124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc
Confidence             665 66777778888777743333334666677777777766 5555554  566666666666666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=1.5e-15  Score=128.80  Aligned_cols=140  Identities=15%  Similarity=0.213  Sum_probs=99.7

Q ss_pred             CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCC
Q 039257           64 EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQ  139 (210)
Q Consensus        64 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~  139 (210)
                      .+.+++.+++.++.+..+|..  ..+++|++|+++ ++.+..+++..|..+++|++|++++| .++ + |..++++++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence            345677778887777777664  557778888887 77777777655777788888888888 777 5 45567778888


Q ss_pred             EEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          140 LLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      +|++++|.++.+|..+ +++++|++|++++| .+..+++..++.+++|++|++++|.+.+ ++...|++
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~  193 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPS  193 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTT
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhh
Confidence            8888888777777653 67778888888887 6666665457777888888887777643 34444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=1.2e-15  Score=119.71  Aligned_cols=130  Identities=16%  Similarity=0.132  Sum_probs=104.8

Q ss_pred             CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHh-cCCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257           65 WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFF-QLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL  140 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~  140 (210)
                      +++++.|++.+|.++.++..  ..+++|+.|+++ ++.+..+++..+ ..+++|++|++++| .++ ++.. ..+++|++
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~  195 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKT  195 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECC-CCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCE
Confidence            45677777888777766443  567888999998 788887654434 46888999999999 888 7543 35888999


Q ss_pred             EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      |++++|.++.+|..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|++...
T Consensus       196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCCCBHH
T ss_pred             EECCCCcCCcchhhhcccCcccEEECcCC-cccchhhH-hhcCCCCCEEEccCCCccCc
Confidence            99999999988888889999999999999 88889886 88899999999999998633

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=6e-15  Score=108.81  Aligned_cols=134  Identities=22%  Similarity=0.335  Sum_probs=113.1

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCC
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQN  146 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~  146 (210)
                      +.++..++.++.+|... .++++.|+++ ++.++.++...+..+++|++|++++| .++ +| ..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence            45677777777776542 4689999999 88999999877889999999999999 999 75 55688999999999999


Q ss_pred             cCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          147 AIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       147 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      .++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+. .++...|.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~  146 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR  146 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhcc
Confidence            99988765 589999999999999 888888866889999999999999885 455555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.64  E-value=2.3e-15  Score=124.21  Aligned_cols=146  Identities=21%  Similarity=0.248  Sum_probs=90.6

Q ss_pred             EEEecCCCCccCC--CccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           48 FLVCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        48 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      .+.+.+..++.++  .+..+++|+.|++++|.+..+..  ...+++|+.|+++ .+.++.++...|.++++|++|++++|
T Consensus        36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred             EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC-CCcCCccCcccccCCCCCCEEECCCC
Confidence            3455555555553  35556677777777777766532  2566777777777 66677776655666777777777777


Q ss_pred             ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                       .+. + |..+.++++|++|++++|.++.+ |..+..+++|+.|++++| .++.+|...+..+++|+.|++++|.+
T Consensus       115 -~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          115 -KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             -CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             -ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence             666 3 55666666677777766666644 334556666666666666 55555544455555555555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.64  E-value=4.9e-15  Score=117.36  Aligned_cols=152  Identities=16%  Similarity=0.248  Sum_probs=96.7

Q ss_pred             EecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e
Q 039257           50 VCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F  128 (210)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l  128 (210)
                      .+.+..+..++.+..++.++.+++.+|.+..++....+++|+.|+++ ++.+..+++  +..+++|++|++++| .++ +
T Consensus       183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~  258 (347)
T 4fmz_A          183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG-NNKITDLSP--LANLSQLTWLEIGTN-QISDI  258 (347)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred             EccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEcc-CCccCCCcc--hhcCCCCCEEECCCC-ccCCC
Confidence            33344444444444444555555555554444334556667777777 666666665  567777777777777 666 6


Q ss_pred             cccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          129 LVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       129 ~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      + .+..+++|++|++++|.++.+| .+..+++|+.|++++| .+...+...++.+++|++|++++|.+.+..|...+++|
T Consensus       259 ~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L  335 (347)
T 4fmz_A          259 N-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKM  335 (347)
T ss_dssp             G-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTC
T ss_pred             h-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccChhhhhcc
Confidence            3 4667777777777777777663 4667777888888887 56655544477788888888888887665554444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=3e-15  Score=124.77  Aligned_cols=113  Identities=19%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCCCccEEEcccCCCCcc-cchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCEEeccCCcCcccchhhhcCCCCc
Q 039257           86 TCPHFVTLFLDFNGELKM-IADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLT  162 (210)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~  162 (210)
                      .+++|++|+++ ++.+.. +|...+..+++|+.|++++| .++  +|..+.  ++|++|++++|.++.+|..+..+++|+
T Consensus       372 ~l~~L~~L~Ls-~N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~  447 (520)
T 2z7x_B          372 QMKSLQQLDIS-QNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQ  447 (520)
T ss_dssp             TCTTCCEEECC-SSCCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCC
T ss_pred             hCCCCCEEECC-CCcCCcccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCC
Confidence            34444444444 444443 44333344444444444444 443  333222  466777777777777777667777777


Q ss_pred             EEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchh
Q 039257          163 CLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVS  203 (210)
Q Consensus       163 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~  203 (210)
                      +|++++| .++.+|...+..+++|+.|++++|++.++.+..
T Consensus       448 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  487 (520)
T 2z7x_B          448 ELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  487 (520)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             EEECCCC-cCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence            7777777 667777654667777777777777776655443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=4.2e-16  Score=109.08  Aligned_cols=122  Identities=25%  Similarity=0.299  Sum_probs=94.6

Q ss_pred             CCccEEEeeccccc--ccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCE
Q 039257           66 ENVRRLSLMQNQIE--TLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQL  140 (210)
Q Consensus        66 ~~l~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~  140 (210)
                      ++++.|++++|.+.  .++.. ..+++|+.|+++ ++.++.+ .. +..+++|++|++++| .++  +|..++.+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCc-hh-hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence            57888888888887  56655 677888888888 7778777 32 778888888888888 777  5666667888888


Q ss_pred             EeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEee
Q 039257          141 LDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRKF  192 (210)
Q Consensus       141 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~  192 (210)
                      |++++|.++.+|  ..++.+++|++|++++| .++.+|.   ..+..+++|+.|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            888888888765  67788888888888888 6777765   347778888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.63  E-value=4.3e-15  Score=126.03  Aligned_cols=134  Identities=20%  Similarity=0.184  Sum_probs=111.6

Q ss_pred             EEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCc
Q 039257           70 RLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNA  147 (210)
Q Consensus        70 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~  147 (210)
                      ..+-++.+++.+|..- -+.++.|+++ +|.++.+++..|.++++|++|++++| .++ +| ..|.++++|++|++++|+
T Consensus        35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNL-PFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCccCCCC-CcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence            3444455666676542 1479999999 99999999877999999999999999 999 85 678999999999999999


Q ss_pred             Ccccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          148 IEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       148 l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      ++.+|. .+.++++|++|++++| .++.+|...++++++|++|++++|.+.+...+..|..
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  171 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN  171 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhcc
Confidence            999885 4689999999999999 8899987668999999999999999865433344443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=7.7e-16  Score=133.22  Aligned_cols=114  Identities=20%  Similarity=0.205  Sum_probs=104.8

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcE
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC  163 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~  163 (210)
                      ..+..|+.|+++ ++.+..++.. +..+++|++|++++| .++ +|..++++.+|++|++++|.++.+|..++.+++|++
T Consensus       221 ~~l~~L~~L~Ls-~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          221 YDDQLWHALDLS-NLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             -CCCCCCEEECT-TSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             ccCCCCcEEECC-CCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            667899999999 8889999988 558999999999999 999 999999999999999999999999999999999999


Q ss_pred             EEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchh
Q 039257          164 LNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVS  203 (210)
Q Consensus       164 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~  203 (210)
                      |++++| .++.+|.. ++.+++|++|++++|.+.+.+|..
T Consensus       298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~  335 (727)
T 4b8c_D          298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKI  335 (727)
T ss_dssp             EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHH
T ss_pred             EECCCC-CCCccChh-hhcCCCccEEeCCCCccCCCChHH
Confidence            999999 88999987 999999999999999997766543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.62  E-value=1.1e-14  Score=120.07  Aligned_cols=143  Identities=19%  Similarity=0.267  Sum_probs=83.9

Q ss_pred             EecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e
Q 039257           50 VCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F  128 (210)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l  128 (210)
                      .+.+..+..++.+..+++++.|++.+|.+..++....+++|+.|+++ ++.+..+++  +..+++|+.|++++| .++ +
T Consensus       227 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~  302 (466)
T 1o6v_A          227 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG-ANQISNISP--LAGLTALTNLELNEN-QLEDI  302 (466)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC-SSCCCCCGG--GTTCTTCSEEECCSS-CCSCC
T ss_pred             ECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC-CCccCcccc--ccCCCccCeEEcCCC-cccCc
Confidence            33444444444444455555555555555544444455566666666 555555554  555666666666666 555 4


Q ss_pred             cccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          129 LVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       129 ~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      +. ++.+++|++|++++|.++..+. +..+++|+.|++++| .+..++.  +..+++|+.|++++|.+.+..|
T Consensus       303 ~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          303 SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBCGG
T ss_pred             hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchh--hccCCCCCEEeCCCCccCccch
Confidence            43 5566666666666666665543 556666777777766 5666543  6667777777777777655544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.62  E-value=6.5e-15  Score=123.97  Aligned_cols=139  Identities=18%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             ccCCCCccEEEeecccccccCC----CCCCCCccEEEcccCCCCcc-cchhHhcCCCCCcEEecCCcccee--ecccccC
Q 039257           62 VKEWENVRRLSLMQNQIETLSE----VPTCPHFVTLFLDFNGELKM-IADGFFQLMPSLKVLKMSNCWNLK--FLVGMSK  134 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~  134 (210)
                      +..+++++.|++.+|.++.++.    ...+++|+.|+++ ++.+.. +|...+..+++|++|++++| .++  +|..+. 
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~-  449 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS-LNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP-  449 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT-TSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC-
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC-CCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc-
Confidence            3444555555555555554332    2445556666666 555554 55444555566666666666 554  343332 


Q ss_pred             CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhh
Q 039257          135 LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTW  205 (210)
Q Consensus       135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f  205 (210)
                       ++|++|++++|.++.+|..+..+++|+.|++++| .++.+|...+..+++|+.+++++|++.++.+...|
T Consensus       450 -~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          450 -PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             -TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             -CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence             5777888888877778777778888888888888 77778775577788888888888888776654433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.62  E-value=3.4e-15  Score=120.23  Aligned_cols=128  Identities=21%  Similarity=0.206  Sum_probs=93.4

Q ss_pred             CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257           66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS  144 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~  144 (210)
                      .+++.|++.+|.+...+....+++|+.|+++ ++.+..+++..+..+++|+.|++++| .++ +|..+..+++|++|+++
T Consensus       226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             SSCCEEECCSSCCCCCGGGGGCTTCSEEECC-SSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECC
T ss_pred             ccccEEECCCCCCcccHHHcCCCCccEEECC-CCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECC
Confidence            4566677777766665545667777888887 77777665555777788888888887 777 77666777778888888


Q ss_pred             CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      +|.++.+|..+..+++|+.|++++| .+..+|   +..+++|+.|++++|++...
T Consensus       304 ~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          304 HNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             SSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCcceecCccccccCcCCEEECCCC-ccceeC---chhhccCCEEEcCCCCccch
Confidence            8877777777777788888888887 666665   46677888888888776543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.62  E-value=2.3e-14  Score=112.85  Aligned_cols=140  Identities=14%  Similarity=0.226  Sum_probs=91.9

Q ss_pred             cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCE
Q 039257           63 KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQL  140 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~  140 (210)
                      ..+++++.|++.+|.++.++.... ++|+.|+++ ++.++.+++..+..+++|++|++++| .++ + +..+..+++|++
T Consensus       168 ~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          168 QGMKKLSYIRIADTNITTIPQGLP-PSLTELHLD-GNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             GGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECT-TSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCE
T ss_pred             cCCCCcCEEECCCCccccCCcccc-ccCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCE
Confidence            344566666666666665554322 667777777 66666665555677777777777777 777 5 346677777777


Q ss_pred             EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccC------CCCCCeEEeeccccCC-Ccchhhhh
Q 039257          141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN------FSRLRGLRKFITCASS-QLKVSTWE  206 (210)
Q Consensus       141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~------l~~L~~L~l~~~~~~~-~~~~~~f~  206 (210)
                      |++++|.++.+|..+..+++|++|++++| .++.+|...+..      .+.++.+++++|++.. .+++..|.
T Consensus       245 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~  316 (330)
T 1xku_A          245 LHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR  316 (330)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred             EECCCCcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence            77777777777777777777777777777 677776544432      3567777777777642 34444554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=4.8e-15  Score=124.58  Aligned_cols=153  Identities=21%  Similarity=0.324  Sum_probs=120.7

Q ss_pred             EEecCCCCccCCC-ccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           49 LVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        49 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      +.+.+..+..++. +..+++++.|++.+|.+...+.   ...+++|+.|+++ ++.+...++..+.++++|++|++++| 
T Consensus       378 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-  455 (570)
T 2z63_A          378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGN-  455 (570)
T ss_dssp             EECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT-TSCCEECCTTTTTTCTTCCEEECTTC-
T ss_pred             EECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc-CCcccccchhhhhcCCcCcEEECcCC-
Confidence            3344444444332 4556778888888888776533   3677889999999 77777766655888999999999999 


Q ss_pred             cee---ecccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257          125 NLK---FLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       125 ~~~---l~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                      .+.   +|..+..+++|++|++++|.++.+ |..+..+++|+.|++++| .++.+|...+..+++|+.+++++|++.+..
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            774   788889999999999999998866 678889999999999999 788887766889999999999999998887


Q ss_pred             chhh
Q 039257          201 KVST  204 (210)
Q Consensus       201 ~~~~  204 (210)
                      +...
T Consensus       535 ~~~~  538 (570)
T 2z63_A          535 PRID  538 (570)
T ss_dssp             TTTH
T ss_pred             cchH
Confidence            7543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=6.1e-15  Score=125.97  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=12.9

Q ss_pred             CCCcCCEEeccCCcCcccchhhhcCCCCcEEEc
Q 039257          134 KLGSLQLLDISQNAIEELPEELKLLINLTCLNL  166 (210)
Q Consensus       134 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  166 (210)
                      .+++|++|++++|.++.+|..+..+++|+.|++
T Consensus       511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred             cCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence            333333333333333333333333333444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.61  E-value=2.8e-15  Score=127.02  Aligned_cols=155  Identities=18%  Similarity=0.232  Sum_probs=124.0

Q ss_pred             cEEEecCCCCccCCC--ccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257           47 NFLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN  122 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  122 (210)
                      ..+.+.+..++.++.  +..++++++|++++|.++.++..  ..+++|++|+++ ++.+..+++..|.++++|++|++++
T Consensus        35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~  113 (606)
T 3vq2_A           35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVE  113 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred             CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEEEccC
Confidence            356677777777764  67888999999999999887543  788999999999 8889988666689999999999999


Q ss_pred             cccee-ec-ccccCCCcCCEEeccCCcCc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCC----eEEeecc
Q 039257          123 CWNLK-FL-VGMSKLGSLQLLDISQNAIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLR----GLRKFIT  194 (210)
Q Consensus       123 ~~~~~-l~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~----~L~l~~~  194 (210)
                      | .++ ++ ..++++.+|++|++++|.++  .+|..++++++|++|++++| .++.++...++.+++|+    ++++++|
T Consensus       114 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n  191 (606)
T 3vq2_A          114 T-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLN  191 (606)
T ss_dssp             S-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred             C-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCC
Confidence            9 988 64 78999999999999999987  57899999999999999999 77776654455554443    6777777


Q ss_pred             ccCCCcchhhh
Q 039257          195 CASSQLKVSTW  205 (210)
Q Consensus       195 ~~~~~~~~~~f  205 (210)
                      .+. .++...|
T Consensus       192 ~l~-~~~~~~~  201 (606)
T 3vq2_A          192 PID-FIQDQAF  201 (606)
T ss_dssp             CCC-EECTTTT
T ss_pred             Ccc-eeCcccc
Confidence            663 3444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=9.4e-15  Score=121.75  Aligned_cols=141  Identities=20%  Similarity=0.249  Sum_probs=121.2

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.+.+..++.+|..-. ++++.|++++|.++.++.  ...+++|++|+++ ++.++.+++..|.++++|++|++++| 
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHN-   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCC-
Confidence            467888888998886433 789999999999988764  3789999999999 88999887666999999999999999 


Q ss_pred             cee-ecccccCCCcCCEEeccCCcCcc--cchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCC--CeEEeecccc
Q 039257          125 NLK-FLVGMSKLGSLQLLDISQNAIEE--LPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL--RGLRKFITCA  196 (210)
Q Consensus       125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~  196 (210)
                      .++ +|..  .+++|++|++++|.++.  +|..++++++|++|++++| .+...   .+..+++|  +.|++++|.+
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKS---SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccchh---hccccccceeeEEEeecccc
Confidence            999 9876  89999999999999885  5789999999999999999 66552   26778888  9999999988

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.60  E-value=2.9e-14  Score=112.29  Aligned_cols=102  Identities=20%  Similarity=0.332  Sum_probs=51.2

Q ss_pred             EEecCCCCccCCC--ccCCCCccEEEeeccccccc-CCC-CCCCCccEEEcccCCCC---------------------cc
Q 039257           49 LVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETL-SEV-PTCPHFVTLFLDFNGEL---------------------KM  103 (210)
Q Consensus        49 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l-~~~-~~~~~L~~L~l~~~~~~---------------------~~  103 (210)
                      +.+.+..++.++.  +..++++++|++++|.+..+ +.. ..+++|++|+++ ++.+                     ..
T Consensus        57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~l~~~~~~~L~~L~l~~n~l~~  135 (330)
T 1xku_A           57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KNQLKELPEKMPKTLQELRVHENEITK  135 (330)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCSBCCSSCCTTCCEEECCSSCCCB
T ss_pred             EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC-CCcCCccChhhcccccEEECCCCcccc
Confidence            4455555555542  44555666666666665554 222 444555555555 4444                     44


Q ss_pred             cchhHhcCCCCCcEEecCCcccee----ecccccCCCcCCEEeccCCcCcccc
Q 039257          104 IADGFFQLMPSLKVLKMSNCWNLK----FLVGMSKLGSLQLLDISQNAIEELP  152 (210)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~~lp  152 (210)
                      +++..+.++++|++|++++| .++    .+..+.++++|++|++++|.++.+|
T Consensus       136 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          136 VRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             BCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred             cCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence            44444555555666665555 443    2344444555555555554444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=1.4e-14  Score=121.93  Aligned_cols=141  Identities=22%  Similarity=0.287  Sum_probs=118.6

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.+.+..++.+|..- .++++.|++++|.++.++.  ...+++|++|+++ ++.++.+++..|.++++|++|++++| 
T Consensus        34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-  110 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHN-  110 (562)
T ss_dssp             CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred             cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence            57788888999888633 3789999999999988764  3888999999999 88899887766899999999999999 


Q ss_pred             cee-ecccccCCCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCC--CeEEeecccc
Q 039257          125 NLK-FLVGMSKLGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL--RGLRKFITCA  196 (210)
Q Consensus       125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~  196 (210)
                      .++ +|..  .+++|++|++++|.++.+|  ..++++++|++|++++| .+...+   +..+++|  +.|++++|.+
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred             cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence            999 9876  8899999999999988754  78899999999999998 565532   4555666  9999999887

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.60  E-value=3.8e-15  Score=116.75  Aligned_cols=150  Identities=16%  Similarity=0.288  Sum_probs=83.5

Q ss_pred             EEEecCCCCc-cCCC-ccCCCCccEEEeecccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCC-CCcEEecC
Q 039257           48 FLVCAGAGLE-EAPD-VKEWENVRRLSLMQNQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMP-SLKVLKMS  121 (210)
Q Consensus        48 ~~~~~~~~~~-~~~~-~~~~~~l~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~-~L~~L~l~  121 (210)
                      .+.+.+..+. .+|. +..++++++|++++|.+.+ +|.. ..+++|++|+++ ++.+. .+|.. +..+. .|++|+++
T Consensus       105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~-l~~l~~~L~~L~L~  182 (313)
T 1ogq_A          105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDS-YGSFSKLFTSMTIS  182 (313)
T ss_dssp             EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGG-GGCCCTTCCEEECC
T ss_pred             EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHH-HhhhhhcCcEEECc
Confidence            3344444444 3332 4555667777777776663 3333 556666666666 55555 44444 45554 56666666


Q ss_pred             Ccccee--eccc-----------------------ccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCC-CC
Q 039257          122 NCWNLK--FLVG-----------------------MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLN-KI  175 (210)
Q Consensus       122 ~~~~~~--l~~~-----------------------~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~l  175 (210)
                      +| .++  +|..                       +..+++|++|++++|.++..+..+..+++|++|++++| .+. .+
T Consensus       183 ~N-~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~  260 (313)
T 1ogq_A          183 RN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTL  260 (313)
T ss_dssp             SS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEECC
T ss_pred             CC-eeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC-cccCcC
Confidence            55 544  3444                       44455555555555555433334555566666666666 443 55


Q ss_pred             CcccccCCCCCCeEEeeccccCCCcch
Q 039257          176 PRQLISNFSRLRGLRKFITCASSQLKV  202 (210)
Q Consensus       176 p~~~~~~l~~L~~L~l~~~~~~~~~~~  202 (210)
                      |.. +..+++|++|++++|.+.+.+|.
T Consensus       261 p~~-l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          261 PQG-LTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CGG-GGGCTTCCEEECCSSEEEEECCC
T ss_pred             ChH-HhcCcCCCEEECcCCcccccCCC
Confidence            554 66666777777777766655554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=5.4e-15  Score=122.57  Aligned_cols=128  Identities=16%  Similarity=0.137  Sum_probs=100.8

Q ss_pred             CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhc-CCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257           65 WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQ-LMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL  140 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~  140 (210)
                      ++.++.|++++|.+..++..  ..+++|+.|+++ +|.+..+++..+. .+++|++|++++| .++ +|. ...+++|++
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~  195 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKT  195 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC-CCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCE
Confidence            45677788888777765432  567888888888 7777765443343 6888888888888 888 754 335888999


Q ss_pred             EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      |++++|.++.+|..+..+++|+.|++++| .+..+|.. ++.+++|+.|++++|++.
T Consensus       196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred             EECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchh-hccCCCCCEEEcCCCCCc
Confidence            99999988888888888899999999998 78888886 888899999999998886

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.60  E-value=1.4e-14  Score=122.81  Aligned_cols=150  Identities=17%  Similarity=0.158  Sum_probs=93.8

Q ss_pred             EEecCCCCccCCC--ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           49 LVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        49 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      +.+.+..+..++.  +..+++++.|++++|.++.+|.. ..+++|++|+++ ++.+..+++..+..+++|++|++++| .
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~  336 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGN-T  336 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEECCSC-S
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEECCCC-C
Confidence            3455556665554  55667788888888888777665 667788888888 77777665544667777777777777 5


Q ss_pred             ee--ec-ccccCCCcCCEEeccCCcCccc---chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          126 LK--FL-VGMSKLGSLQLLDISQNAIEEL---PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       126 ~~--l~-~~~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      +.  +| ..+..+++|++|++++|.++..   |..+..+++|+.|++++| .+..++...++.+++|++|++++|.+.+.
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            54  43 3466666666666666666544   345566666666666666 44444333355556666666665555444


Q ss_pred             cc
Q 039257          200 LK  201 (210)
Q Consensus       200 ~~  201 (210)
                      .+
T Consensus       416 ~~  417 (606)
T 3t6q_A          416 DA  417 (606)
T ss_dssp             TT
T ss_pred             cc
Confidence            33

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.60  E-value=2.3e-14  Score=118.08  Aligned_cols=138  Identities=25%  Similarity=0.322  Sum_probs=61.3

Q ss_pred             ecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec
Q 039257           51 CAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL  129 (210)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~  129 (210)
                      +.+..+..++.+..+++++.|++.+|.+..++....+++|+.|+++ ++.++.++.  +..+++|++|++++| .++ ++
T Consensus       184 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~  259 (466)
T 1o6v_A          184 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN-GNQLKDIGT--LASLTNLTDLDLANN-QISNLA  259 (466)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GGGCTTCSEEECCSS-CCCCCG
T ss_pred             CcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECC-CCCcccchh--hhcCCCCCEEECCCC-ccccch
Confidence            3334444444444444555555555544443333334444444444 444444332  344445555555554 444 33


Q ss_pred             ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          130 VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       130 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      . +..+++|++|++++|.++.+|. +..+++|+.|++++| .+..++.  ++.+++|+.|++++|.+.
T Consensus       260 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          260 P-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             G-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred             h-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchh--hcCCCCCCEEECcCCcCC
Confidence            2 4444444444444444444433 344444444444444 3444333  344444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=6.8e-15  Score=124.77  Aligned_cols=128  Identities=21%  Similarity=0.206  Sum_probs=98.3

Q ss_pred             CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257           66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS  144 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~  144 (210)
                      ..++.|++.+|.+...+....+++|+.|+++ ++.+..+++..|..+++|++|++++| .++ +|..++.+++|++|+++
T Consensus       232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             SCCCEEECCSSCCCCCGGGGGCTTCSEEECC-SSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECC
T ss_pred             CCCCEEECCCCCCCCChhhccCCCCCEEECC-CCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECC
Confidence            4577777777777665555677888888888 77777665555778888888888888 888 77777778888888888


Q ss_pred             CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      +|.++.+|..+..+++|+.|++++| .+..+|   +..+++|+.|++++|++.+.
T Consensus       310 ~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          310 HNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCccCcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            8888888877888888888888888 677665   56778888888888887544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.59  E-value=2.9e-14  Score=124.20  Aligned_cols=86  Identities=23%  Similarity=0.310  Sum_probs=40.3

Q ss_pred             CCcEEecCCcccee--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEE
Q 039257          114 SLKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLR  190 (210)
Q Consensus       114 ~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~  190 (210)
                      +|++|++++| .++  +|..+++++.|++|++++|.++ .+|..++.+++|+.|++++|...+.+|.. ++.+++|++|+
T Consensus       633 ~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~  710 (768)
T 3rgz_A          633 SMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEID  710 (768)
T ss_dssp             CCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEE
T ss_pred             cccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEE
Confidence            3444444444 443  3444444444445555554444 44444455555555555555222244443 44555555555


Q ss_pred             eeccccCCCcc
Q 039257          191 KFITCASSQLK  201 (210)
Q Consensus       191 l~~~~~~~~~~  201 (210)
                      +++|++.+.+|
T Consensus       711 ls~N~l~g~iP  721 (768)
T 3rgz_A          711 LSNNNLSGPIP  721 (768)
T ss_dssp             CCSSEEEEECC
T ss_pred             CcCCcccccCC
Confidence            55555544444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.59  E-value=7.4e-15  Score=115.07  Aligned_cols=106  Identities=15%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             CccCCCCccEEEeec-ccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccC
Q 039257           61 DVKEWENVRRLSLMQ-NQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSK  134 (210)
Q Consensus        61 ~~~~~~~l~~L~l~~-~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~  134 (210)
                      .+..++.++.|++++ |.+.+ +|.. ..+++|++|+++ ++.+. .+|.. +..+++|++|++++| .++  +|..+..
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~  147 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISS  147 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGG
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc-CCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhc
Confidence            355566777777773 55543 3332 556666666666 55555 44443 566666666666666 665  4566666


Q ss_pred             CCcCCEEeccCCcCc-ccchhhhcCC-CCcEEEccCC
Q 039257          135 LGSLQLLDISQNAIE-ELPEELKLLI-NLTCLNLRGT  169 (210)
Q Consensus       135 l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~  169 (210)
                      +++|++|++++|.++ .+|..++.++ +|+.|++++|
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            666666666666665 5555555555 5555555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.58  E-value=4.8e-14  Score=115.99  Aligned_cols=138  Identities=17%  Similarity=0.250  Sum_probs=105.9

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..++.+|.+..++++++|++++|.+++++ ...+++|+.|+++ ++.++.++   +..+++|++|++++| .++
T Consensus        46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L~~N-~l~  119 (457)
T 3bz5_A           46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNCDTN-KLT  119 (457)
T ss_dssp             EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEECCSS-CCS
T ss_pred             EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEECCCC-cCC
Confidence            55677778888888888889999999999888875 5678889999998 88888775   678888999999998 888


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                       +|  ++.+++|++|++++|.++.+|  ++.+++|+.|++++|..++.++   ++.+++|++|++++|.+.+
T Consensus       120 ~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          120 KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred             eec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence             76  778888888888888888764  5667777777777775555552   5566666666666666533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=1.2e-14  Score=126.64  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=105.8

Q ss_pred             ccCCCCccEEEeecccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccCCC
Q 039257           62 VKEWENVRRLSLMQNQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLG  136 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~  136 (210)
                      +..+++++.|++++|.+.+ +|.. ..+++|+.|+++ .+.+. .+|.. +..+++|++|++++| .++  +|..+++++
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW-LNMLEGEIPQE-LMYVKTLETLILDFN-DLTGEIPSGLSNCT  490 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCCSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCT
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC-CCcccCcCCHH-HcCCCCceEEEecCC-cccCcCCHHHhcCC
Confidence            4455667777777777664 3333 667778888888 66666 44444 778888888888888 777  677888888


Q ss_pred             cCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257          137 SLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE  206 (210)
Q Consensus       137 ~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~  206 (210)
                      +|++|++++|.++ .+|..++.+++|++|++++|...+.+|.. ++.+++|+.|++++|.+.+.+|...|.
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhc
Confidence            8888888888877 67888888888888888888433467765 888888888888888888888876553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.58  E-value=2.9e-14  Score=112.41  Aligned_cols=143  Identities=24%  Similarity=0.354  Sum_probs=101.5

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.+.+..++.+|... .+.++.|++++|.+..++.  ...+++|++|+++ ++.++.+++..+.++++|++|++++| 
T Consensus        36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-  112 (332)
T 2ft3_A           36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISKN-  112 (332)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGSTTCTTCCEEECCSS-
T ss_pred             CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECC-CCccCccCHhHhhCcCCCCEEECCCC-
Confidence            34667777777777533 3678888888888887654  3778888888888 77888776655788888888888888 


Q ss_pred             cee-ecccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeecccc
Q 039257          125 NLK-FLVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      .++ +|..+.  ++|++|++++|.++.+|. .+..+++|+.|++++| .++.  ++...+..+ +|++|++++|.+
T Consensus       113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCC
Confidence            888 776554  678888888888887764 4677888888888887 5542  222224444 555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=2.3e-14  Score=102.17  Aligned_cols=129  Identities=25%  Similarity=0.305  Sum_probs=110.6

Q ss_pred             cEEEecCCCCc--cCCCc-cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           47 NFLVCAGAGLE--EAPDV-KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        47 ~~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ..+.+.+..+.  .+|.. ..+++++.|++.+|.++.+.....+++|+.|+++ ++.+....+..+..+++|++|++++|
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N  105 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNLTHLNLSGN  105 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECc-CCcCchHHHHHHhhCCCCCEEeccCC
Confidence            45667777777  67765 7788999999999999988555889999999999 88888844444778999999999999


Q ss_pred             ccee-ec--ccccCCCcCCEEeccCCcCcccch----hhhcCCCCcEEEccCCCCCCCCCcc
Q 039257          124 WNLK-FL--VGMSKLGSLQLLDISQNAIEELPE----ELKLLINLTCLNLRGTGQLNKIPRQ  178 (210)
Q Consensus       124 ~~~~-l~--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~~~~lp~~  178 (210)
                       .++ +|  ..+..+++|++|++++|.++.+|.    .+..+++|++|++++| ...++|..
T Consensus       106 -~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~  165 (168)
T 2ell_A          106 -KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS  165 (168)
T ss_dssp             -SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred             -ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence             999 76  788999999999999999998886    7889999999999999 77888763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.58  E-value=1.1e-14  Score=114.10  Aligned_cols=126  Identities=22%  Similarity=0.228  Sum_probs=61.1

Q ss_pred             CCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcc---cchh-HhcCCCCCcEEecCCcccee-ec----ccccC
Q 039257           66 ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKM---IADG-FFQLMPSLKVLKMSNCWNLK-FL----VGMSK  134 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~---~~~~-~~~~l~~L~~L~l~~~~~~~-l~----~~~~~  134 (210)
                      +++++|++++|.+..++..  ..+++|+.|+++ ++.+..   ++.. .+..+++|++|++++| .++ ++    ..+.+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS-DNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAA  226 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC-SCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECC-CCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhc
Confidence            4555666666655554421  445555555555 444321   1111 0145555555555555 554 32    11234


Q ss_pred             CCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          135 LGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       135 l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      +++|++|++++|.++..+  ..+..+++|++|++++| .++.+|.. +.  ++|++|++++|.+.
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG-LP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS-CC--SEEEEEECCSSCCC
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh-cc--CCceEEECCCCCCC
Confidence            455555555555555432  22334455555555555 45555543 32  45555555555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.7e-14  Score=126.66  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=12.0

Q ss_pred             CCcCCEEeccCCcCcccchhhhcCCCCcEEEc
Q 039257          135 LGSLQLLDISQNAIEELPEELKLLINLTCLNL  166 (210)
Q Consensus       135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  166 (210)
                      +++|+.|++++|.++.+|..++.+++|+.|++
T Consensus       752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L  783 (876)
T 4ecn_A          752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI  783 (876)
T ss_dssp             CTTCCEEECCSSCCSSCCCGGGGCTTCCEEEC
T ss_pred             CCCcCEEEeCCCCCCccchhhhcCCCCCEEEC
Confidence            33333333333333333333333333333333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=1e-14  Score=114.01  Aligned_cols=128  Identities=18%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcc---cchh-HhcCCCCCcEEecCCcccee-ecc----ccc
Q 039257           65 WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKM---IADG-FFQLMPSLKVLKMSNCWNLK-FLV----GMS  133 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~---~~~~-~~~~l~~L~~L~l~~~~~~~-l~~----~~~  133 (210)
                      ++++++|++++|.+..++..  ..+++|++|+++ +|.+..   ++.. .+..+++|++|++++| .++ ++.    .++
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence            45666777777766655432  456666677766 554432   2111 1245666666666666 665 432    134


Q ss_pred             CCCcCCEEeccCCcCccc-chhhhcC---CCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257          134 KLGSLQLLDISQNAIEEL-PEELKLL---INLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       134 ~l~~L~~L~l~~~~l~~l-p~~~~~l---~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      .+++|++|++++|.++.. |..+..+   ++|++|++++| .++.+|.. +.  ++|++|++++|.+.+
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~-~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG-LP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC-CC--SCCSCEECCSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh-hc--CCCCEEECCCCcCCC
Confidence            556666666666666644 5444444   46666666666 55566654 32  566666666666644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=1.6e-14  Score=121.49  Aligned_cols=138  Identities=25%  Similarity=0.333  Sum_probs=87.4

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCC------------------CCCCccEEEcccCCCCcccchhHh
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVP------------------TCPHFVTLFLDFNGELKMIADGFF  109 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~------------------~~~~L~~L~l~~~~~~~~~~~~~~  109 (210)
                      .+.+.++.++.+|  ..+++++.|++++|.++.+|...                  .+++|+.|+++ +|.++.+|.   
T Consensus        84 ~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls-~N~l~~lp~---  157 (571)
T 3cvr_A           84 VLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINAD-NNQLTMLPE---  157 (571)
T ss_dssp             EEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC-SSCCSCCCC---
T ss_pred             EEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCCcCccccEEeCC-CCccCcCCC---
Confidence            3444555555555  33455555555555555444311                  34455555555 555555553   


Q ss_pred             cCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCC-------cEEEccCCCCCCCCCccccc
Q 039257          110 QLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINL-------TCLNLRGTGQLNKIPRQLIS  181 (210)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L-------~~L~l~~~~~~~~lp~~~~~  181 (210)
                       .+++|++|++++| .++ +|. ++  ++|++|++++|.++.+|. +..  +|       +.|++++| .++.+|.. +.
T Consensus       158 -~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~-l~  227 (571)
T 3cvr_A          158 -LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN-IL  227 (571)
T ss_dssp             -CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCCCCGG-GG
T ss_pred             -cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHH-Hh
Confidence             3456777777777 666 665 44  677888888887777776 433  56       88888888 78888886 66


Q ss_pred             CCCCCCeEEeeccccCCCcc
Q 039257          182 NFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       182 ~l~~L~~L~l~~~~~~~~~~  201 (210)
                      .+++|+.|++++|++.+.+|
T Consensus       228 ~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          228 SLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             GSCTTEEEECCSSSCCHHHH
T ss_pred             cCCCCCEEEeeCCcCCCcCH
Confidence            68888899998888866554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=1.5e-14  Score=115.00  Aligned_cols=157  Identities=20%  Similarity=0.230  Sum_probs=91.6

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCC------------------------
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGEL------------------------  101 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~------------------------  101 (210)
                      .+.|.+.+++.+|..- ...++.|++++|.++.++..  ..+++|++|+++ ++.+                        
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEE-CCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECc-CCCCCCccChhHhhcchhhhhhhcccCC
Confidence            4567777777776421 24567777777777666543  556666666666 4443                        


Q ss_pred             --cccchhHhcCCCCCcEEecCCcccee-ecc--------------------------cccCC-CcCCEEeccCCcCccc
Q 039257          102 --KMIADGFFQLMPSLKVLKMSNCWNLK-FLV--------------------------GMSKL-GSLQLLDISQNAIEEL  151 (210)
Q Consensus       102 --~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~--------------------------~~~~l-~~L~~L~l~~~~l~~l  151 (210)
                        ..+++..|..+++|++|++++| .++ +|.                          .+..+ ..+++|++++|.++.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence              3333333444555555555554 333 221                          01111 1344555555555555


Q ss_pred             chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          152 PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       152 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      |.......+|+.+++.++..++.+|..++..+++|++|++++|.+ ..+|...|.+|
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L  225 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENL  225 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCTTC
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChhhhccc
Confidence            555445556677777654477777776677888888888888877 55666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.57  E-value=3e-14  Score=112.38  Aligned_cols=134  Identities=19%  Similarity=0.279  Sum_probs=115.6

Q ss_pred             CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEecc
Q 039257           67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDIS  144 (210)
Q Consensus        67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~  144 (210)
                      .++.+++.++.++.+|... .++++.|+++ ++.+..+++..+.++++|++|++++| .++ + |..++++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECC-CCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence            6899999999998887653 4789999999 88899888766899999999999999 999 6 7889999999999999


Q ss_pred             CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC-Ccchhhhh
Q 039257          145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS-QLKVSTWE  206 (210)
Q Consensus       145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~f~  206 (210)
                      +|.++.+|..+.  ++|++|++++| .+..+|...+..+++|++|++++|.+.. .+.+..|.
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  170 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD  170 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred             CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence            999999987765  89999999999 8889988768999999999999998852 23334443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.56  E-value=2.3e-14  Score=112.17  Aligned_cols=154  Identities=17%  Similarity=0.150  Sum_probs=113.6

Q ss_pred             EEEecCCCCc-cCCC-c--cCCCCccEEEeecccccccCCC-CCC-----CCccEEEcccCCCCcccchhHhcCCCCCcE
Q 039257           48 FLVCAGAGLE-EAPD-V--KEWENVRRLSLMQNQIETLSEV-PTC-----PHFVTLFLDFNGELKMIADGFFQLMPSLKV  117 (210)
Q Consensus        48 ~~~~~~~~~~-~~~~-~--~~~~~l~~L~l~~~~~~~l~~~-~~~-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  117 (210)
                      .+.+.+..+. .+|. +  ..+++++.|++++|.+++++.. ..+     ++|++|+++ ++.+..+++..+..+++|++
T Consensus        99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~  177 (312)
T 1wwl_A           99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALST  177 (312)
T ss_dssp             EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-SCSCCCCCTTTCCCCSSCCE
T ss_pred             EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-CCCCccchHHHhccCCCCCE
Confidence            4455555555 3443 2  5678899999999988877543 233     889999999 88888888666888999999


Q ss_pred             EecCCcccee----ecccc--cCCCcCCEEeccCCcCcccc---hh-hhcCCCCcEEEccCCCCCCCCC-cccccCCCCC
Q 039257          118 LKMSNCWNLK----FLVGM--SKLGSLQLLDISQNAIEELP---EE-LKLLINLTCLNLRGTGQLNKIP-RQLISNFSRL  186 (210)
Q Consensus       118 L~l~~~~~~~----l~~~~--~~l~~L~~L~l~~~~l~~lp---~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~~l~~L  186 (210)
                      |++++| .+.    +|..+  +.+++|++|++++|.++.++   .. +..+++|+.|++++| .+...+ ...+..+++|
T Consensus       178 L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L  255 (312)
T 1wwl_A          178 LDLSDN-PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQL  255 (312)
T ss_dssp             EECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTC
T ss_pred             EECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCC
Confidence            999999 654    24444  78889999999999888544   22 357789999999999 666644 2336678999


Q ss_pred             CeEEeeccccCCCcchhhh
Q 039257          187 RGLRKFITCASSQLKVSTW  205 (210)
Q Consensus       187 ~~L~l~~~~~~~~~~~~~f  205 (210)
                      ++|++++|.+. .+|...+
T Consensus       256 ~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          256 NSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CEEECTTSCCS-SCCSSCC
T ss_pred             CEEECCCCccC-hhhhhcc
Confidence            99999999885 6665544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.56  E-value=3e-14  Score=122.36  Aligned_cols=156  Identities=19%  Similarity=0.232  Sum_probs=126.9

Q ss_pred             cEEEecCCCCccCCC--ccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257           47 NFLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN  122 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  122 (210)
                      ..+.+.+..++.++.  +..+++++.|++++|.+..++..  ..+++|++|+++ ++.+..+|...|.++++|++|++++
T Consensus        28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~  106 (680)
T 1ziw_A           28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFAFCTNLTELHLMS  106 (680)
T ss_dssp             SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC-CCccCccChhhhccCCCCCEEECCC
Confidence            356677777777764  67778999999999999887544  678999999999 8889999986689999999999999


Q ss_pred             cccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCccccc--CCCCCCeEEeeccccC
Q 039257          123 CWNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLIS--NFSRLRGLRKFITCAS  197 (210)
Q Consensus       123 ~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~--~l~~L~~L~l~~~~~~  197 (210)
                      | .++ ++ ..++++++|++|++++|.++.. |..++++++|++|++++| .++.++...+.  .+++|++|++++|.+.
T Consensus       107 n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          107 N-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             S-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             C-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCccc
Confidence            9 888 64 7889999999999999988855 456789999999999999 77777654343  5689999999999875


Q ss_pred             CCcchhhhh
Q 039257          198 SQLKVSTWE  206 (210)
Q Consensus       198 ~~~~~~~f~  206 (210)
                      + +++..|.
T Consensus       185 ~-~~~~~~~  192 (680)
T 1ziw_A          185 E-FSPGCFH  192 (680)
T ss_dssp             C-BCTTGGG
T ss_pred             c-cChhhhh
Confidence            4 4444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.55  E-value=9.2e-14  Score=118.68  Aligned_cols=151  Identities=17%  Similarity=0.192  Sum_probs=115.0

Q ss_pred             EEEecCCCCccCCCccC---CCCccEEEeeccccccc-CCC-C-------CCCCccEEEcccCCCCcccchhHhcCCCCC
Q 039257           48 FLVCAGAGLEEAPDVKE---WENVRRLSLMQNQIETL-SEV-P-------TCPHFVTLFLDFNGELKMIADGFFQLMPSL  115 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~---~~~l~~L~l~~~~~~~l-~~~-~-------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L  115 (210)
                      .+.+.++.++.+|..-.   +.+++.|++++|.+.+. |.. .       .+++|+.|+++ ++.++.+|...+..+++|
T Consensus       381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SSCCCSCCTHHHHTTCCC
T ss_pred             EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CCccCcCCHHHHccCCCC
Confidence            34455556666664321   22577788888877652 221 2       56689999999 888899998877889999


Q ss_pred             cEEecCCcccee-ecccccC-C-------CcCCEEeccCCcCcccchhhh--cCCCCcEEEccCCCCCCCCCcccccCCC
Q 039257          116 KVLKMSNCWNLK-FLVGMSK-L-------GSLQLLDISQNAIEELPEELK--LLINLTCLNLRGTGQLNKIPRQLISNFS  184 (210)
Q Consensus       116 ~~L~l~~~~~~~-l~~~~~~-l-------~~L~~L~l~~~~l~~lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~~l~  184 (210)
                      ++|++++| .++ +|..+.. .       ++|++|++++|.++.+|..+.  .+++|+.|++++| .++.+|.. ++.++
T Consensus       460 ~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~~l~  536 (636)
T 4eco_A          460 SSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQ-PLNSS  536 (636)
T ss_dssp             SEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GGGCS
T ss_pred             CEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChh-hhcCC
Confidence            99999999 998 8755443 2       289999999999999998887  9999999999999 77789886 88899


Q ss_pred             CCCeEEee------ccccCCCcch
Q 039257          185 RLRGLRKF------ITCASSQLKV  202 (210)
Q Consensus       185 ~L~~L~l~------~~~~~~~~~~  202 (210)
                      +|+.|+++      +|.+.+.+|.
T Consensus       537 ~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          537 TLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             SCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             CCCEEECCCCcccccCcccccChH
Confidence            99999984      4555555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=2.2e-14  Score=103.19  Aligned_cols=121  Identities=20%  Similarity=0.256  Sum_probs=108.1

Q ss_pred             cEEEecCCCCccCCCccCCC-CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           47 NFLVCAGAGLEEAPDVKEWE-NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      ..+.+.+..++.+|.+..+. +++.|++++|.++.++....+++|+.|+++ ++.++.+++..+..+++|++|++++| .
T Consensus        22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N-~   99 (176)
T 1a9n_A           22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELILTNN-S   99 (176)
T ss_dssp             EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEECCSC-C
T ss_pred             eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECC-CCcccccCcchhhcCCCCCEEECCCC-c
Confidence            34567788888888777666 899999999999988666889999999999 99999999876789999999999999 9


Q ss_pred             ee-ecc--cccCCCcCCEEeccCCcCcccchh----hhcCCCCcEEEccCC
Q 039257          126 LK-FLV--GMSKLGSLQLLDISQNAIEELPEE----LKLLINLTCLNLRGT  169 (210)
Q Consensus       126 ~~-l~~--~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~  169 (210)
                      ++ +|.  .++.+++|++|++++|.++.+|..    +..+++|+.|++++|
T Consensus       100 i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          100 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            99 886  888999999999999999988875    899999999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.55  E-value=2.3e-14  Score=120.78  Aligned_cols=106  Identities=20%  Similarity=0.237  Sum_probs=91.3

Q ss_pred             CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEcc
Q 039257           89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLR  167 (210)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  167 (210)
                      .|+.|+++ ++.++.+|.  +..+++|+.|++++| .++ +|..++++++|++|++++|.++.+| .++.+++|+.|+++
T Consensus       442 ~L~~L~Ls-~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLA-HKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECT-TSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEec-CCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            58889999 888888876  788999999999999 898 8888999999999999999988888 78889999999999


Q ss_pred             CCCCCCCC--CcccccCCCCCCeEEeeccccCCCcc
Q 039257          168 GTGQLNKI--PRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       168 ~~~~~~~l--p~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      +| .++.+  |.. ++.+++|+.|++++|.+.+..+
T Consensus       517 ~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          517 NN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS
T ss_pred             CC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc
Confidence            99 77777  664 8889999999999998866544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=3.4e-14  Score=124.73  Aligned_cols=151  Identities=19%  Similarity=0.230  Sum_probs=98.8

Q ss_pred             cEEEecCCCCccCCC---ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCC-CcEEecCC
Q 039257           47 NFLVCAGAGLEEAPD---VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPS-LKVLKMSN  122 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~  122 (210)
                      ..+.+.++.+..+|.   +..+++|+.|++++|.+..+|....+++|+.|+++ ++.+..+|.. +..+++ |+.|++++
T Consensus       551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls-~N~l~~lp~~-l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD-YNQIEEIPED-FCAFTDQVEGLGFSH  628 (876)
T ss_dssp             CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECC-SSCCSCCCTT-SCEECTTCCEEECCS
T ss_pred             cEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECc-CCccccchHH-HhhccccCCEEECcC
Confidence            456777778888887   67788888999998888888855778888888888 7778887776 777887 88888888


Q ss_pred             cccee-ecccccCCCc--CCEEeccCC-----------------------------cCcccchhhh-cCCCCcEEEccCC
Q 039257          123 CWNLK-FLVGMSKLGS--LQLLDISQN-----------------------------AIEELPEELK-LLINLTCLNLRGT  169 (210)
Q Consensus       123 ~~~~~-l~~~~~~l~~--L~~L~l~~~-----------------------------~l~~lp~~~~-~l~~L~~L~l~~~  169 (210)
                      | .++ +|..++.+..  |+.|++++|                             .++.+|..+. .+++|+.|++++|
T Consensus       629 N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N  707 (876)
T 4ecn_A          629 N-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN  707 (876)
T ss_dssp             S-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred             C-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence            8 787 7766554432  455555544                             4444444432 4555555555555


Q ss_pred             CCCCCCCcccccCC-------CCCCeEEeeccccCCCcch
Q 039257          170 GQLNKIPRQLISNF-------SRLRGLRKFITCASSQLKV  202 (210)
Q Consensus       170 ~~~~~lp~~~~~~l-------~~L~~L~l~~~~~~~~~~~  202 (210)
                       .+..+|...+...       ++|+.|++++|.+. .+|.
T Consensus       708 -~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~  745 (876)
T 4ecn_A          708 -LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD  745 (876)
T ss_dssp             -CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred             -cCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence             4555555322211       15556666555553 4443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=8.3e-14  Score=101.69  Aligned_cols=121  Identities=25%  Similarity=0.331  Sum_probs=107.2

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      ..+.+.+..++.+|.. -.+.++.|++.+|.++.++.. ..+++|+.|+++ ++.++.+++..|.++++|++|++++| .
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N-~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYN-R   89 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence            4678889999999853 236899999999999988754 788999999999 99999999877999999999999999 9


Q ss_pred             ee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCC
Q 039257          126 LK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTG  170 (210)
Q Consensus       126 ~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~  170 (210)
                      ++ + |..+.++++|++|++++|.++.+|.. +..+++|+.|++++|+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            99 6 56799999999999999999988864 7889999999999983

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.54  E-value=3.6e-14  Score=116.75  Aligned_cols=133  Identities=17%  Similarity=0.226  Sum_probs=116.6

Q ss_pred             CccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257           61 DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ  139 (210)
Q Consensus        61 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  139 (210)
                      .+..+++++.|+++++.+++++....+++|+.|+++ ++.++.++   +..+++|++|++++| .++ ++  ++++++|+
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls-~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~  109 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICT-SNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT  109 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECC-SSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred             ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEcc-CCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence            455668999999999999998877889999999999 88899886   789999999999999 999 86  88999999


Q ss_pred             EEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257          140 LLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE  206 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~  206 (210)
                      +|++++|.++.+|  ++.+++|++|++++| .++.++   ++.+++|++|++++|...+.++...+.
T Consensus       110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~  170 (457)
T 3bz5_A          110 YLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQT  170 (457)
T ss_dssp             EEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCT
T ss_pred             EEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCC
Confidence            9999999999886  889999999999999 788875   789999999999999776766544333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.54  E-value=7.3e-14  Score=117.01  Aligned_cols=133  Identities=21%  Similarity=0.274  Sum_probs=113.4

Q ss_pred             EEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcC
Q 039257           71 LSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAI  148 (210)
Q Consensus        71 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l  148 (210)
                      .+.+++.++.+|... .+.|++|+++ ++.++.+++..|.++++|++|++++| .++ + |..++++++|++|++++|.+
T Consensus        10 c~~~~~~l~~ip~~~-~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGL-TAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccccccC-CCCccEEECc-CCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc
Confidence            566777888887753 3789999999 88899887665899999999999999 998 6 57899999999999999999


Q ss_pred             cccchh-hhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          149 EELPEE-LKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       149 ~~lp~~-~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      +.+|.. ++++++|++|++++| .+..  +|.. ++.+++|++|++++|...+.++...|.++
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             CccCHHHhccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCccccccCHhhhhcc
Confidence            988765 899999999999999 7764  4554 89999999999999997788877666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=3.1e-14  Score=99.48  Aligned_cols=110  Identities=24%  Similarity=0.309  Sum_probs=96.0

Q ss_pred             CCCCccEEEcccCCCCc--ccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcc-cchhhhcCCCC
Q 039257           86 TCPHFVTLFLDFNGELK--MIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEE-LPEELKLLINL  161 (210)
Q Consensus        86 ~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L  161 (210)
                      ..++++.|+++ ++.+.  .+|.. +..+++|++|++++| .++ + ..++.+++|++|++++|.++. +|..++.+++|
T Consensus        15 ~~~~l~~L~l~-~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLD-NSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECT-TCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEcc-CCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            45789999999 77887  77775 789999999999999 999 8 778899999999999999997 78777889999


Q ss_pred             cEEEccCCCCCCCCC--cccccCCCCCCeEEeeccccCCCcc
Q 039257          162 TCLNLRGTGQLNKIP--RQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       162 ~~L~l~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      ++|++++| .++.+|  .. ++.+++|++|++++|.+.+..+
T Consensus        91 ~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           91 THLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGSTT
T ss_pred             CEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccchHH
Confidence            99999999 788875  43 8999999999999999865433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.54  E-value=6e-14  Score=109.67  Aligned_cols=157  Identities=15%  Similarity=0.081  Sum_probs=121.2

Q ss_pred             cEEEecCCCCccC-CC-c--cCCCCccEEEeecccccccCC------CCCCCCccEEEcccCCCCcccchhHhcCCCCCc
Q 039257           47 NFLVCAGAGLEEA-PD-V--KEWENVRRLSLMQNQIETLSE------VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLK  116 (210)
Q Consensus        47 ~~~~~~~~~~~~~-~~-~--~~~~~l~~L~l~~~~~~~l~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  116 (210)
                      ..+.+.+..+... |. +  ..+++++.|++++|.+.....      ...+++|++|+++ ++.+..+++..+..+++|+
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIA-QAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEE-CCSSCCCCTTSCCCCTTCC
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEee-CCCcchhhHHHhccCCCCC
Confidence            3456666666543 32 2  567899999999999876322      1458899999999 8899988876688999999


Q ss_pred             EEecCCcccee----ec--ccccCCCcCCEEeccCCcCcccchh----hhcCCCCcEEEccCCCCCCCC-CcccccCC--
Q 039257          117 VLKMSNCWNLK----FL--VGMSKLGSLQLLDISQNAIEELPEE----LKLLINLTCLNLRGTGQLNKI-PRQLISNF--  183 (210)
Q Consensus       117 ~L~l~~~~~~~----l~--~~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~l-p~~~~~~l--  183 (210)
                      +|++++| .+.    ++  ..++.+++|++|++++|.++.+|..    ++.+++|++|++++| .++.. |.. +..+  
T Consensus       173 ~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~~~~  249 (310)
T 4glp_A          173 SLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-APRCMW  249 (310)
T ss_dssp             EEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CSSCCC
T ss_pred             EEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HHhccC
Confidence            9999999 754    32  3346889999999999999877653    478899999999999 67766 664 6665  


Q ss_pred             -CCCCeEEeeccccCCCcchhhhhhc
Q 039257          184 -SRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       184 -~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                       ++|++|++++|.+. .+|...+.+|
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L  274 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLPAKL  274 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCCSCC
T ss_pred             cCcCCEEECCCCCCC-chhhhhcCCC
Confidence             69999999999996 6676554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.53  E-value=2e-14  Score=119.09  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=67.2

Q ss_pred             CCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--eccccc-CCCcCCEEeccCCcCcccchhhhcCCCCcEE
Q 039257           88 PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMS-KLGSLQLLDISQNAIEELPEELKLLINLTCL  164 (210)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  164 (210)
                      ++|+.|+++ ++.+..+++..+..+++|++|++++| .++  .|..+. .+++|++|++++|.++.+|. ...+++|+.|
T Consensus       120 ~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L  196 (487)
T 3oja_A          120 QGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTL  196 (487)
T ss_dssp             SSCEEEECC-SSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEE
T ss_pred             CCCCEEECC-CCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEE
Confidence            445555555 55555554433566667777777777 666  355554 56677777777776666543 2346777777


Q ss_pred             EccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          165 NLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       165 ~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      ++++| .++.+|+. +..+++|+.|++++|.+.
T Consensus       197 ~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          197 DLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             ECCSS-CCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred             ECCCC-CCCCCCHh-HcCCCCccEEEecCCcCc
Confidence            77777 66777665 677777777777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=1.4e-15  Score=131.52  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=99.7

Q ss_pred             ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257           62 VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ  139 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~  139 (210)
                      +..+..++.|++++|.+..++.. ..+++|++|+++ +|.++.+|.. +..+++|++|++++| .++ +|..++++.+|+
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLN-GNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLK  296 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCT-TSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCS
T ss_pred             hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEee-CCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCC
Confidence            45567899999999999988765 778999999999 8899999977 899999999999999 999 999999999999


Q ss_pred             EEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCC
Q 039257          140 LLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIP  176 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp  176 (210)
                      +|++++|.++.+|..++.+++|++|++++| .+...+
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~  332 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQF  332 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHH
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCC
Confidence            999999999999999999999999999999 666443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.51  E-value=2e-13  Score=99.53  Aligned_cols=121  Identities=26%  Similarity=0.356  Sum_probs=105.3

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ..+.+.+..++.+|..- ...++.|++.+|.++.++.   ...+++|+.|+++ ++.++.+++..|.++++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEECCCC
Confidence            46788888999988633 3489999999999998765   3678999999999 99999887666999999999999999


Q ss_pred             ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCC
Q 039257          124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTG  170 (210)
Q Consensus       124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~  170 (210)
                       .++ + +..+.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus        89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence             999 6 46688999999999999999965 6778899999999999994

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.51  E-value=3.6e-14  Score=111.31  Aligned_cols=148  Identities=15%  Similarity=0.168  Sum_probs=96.1

Q ss_pred             EEecCCCCccCCCccCCCCccEEEeecccccccCCC------------------CCCCCccEEEcccCCCCcccchhHhc
Q 039257           49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV------------------PTCPHFVTLFLDFNGELKMIADGFFQ  110 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~  110 (210)
                      +.+.++.++..+.+..+++++.|++++|.++.++..                  ..+++|+.|+++ ++.++.+++..+.
T Consensus        63 L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~-~N~l~~~~~~~~~  141 (317)
T 3o53_A           63 LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA-NNKITMLRDLDEG  141 (317)
T ss_dssp             EECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC-SSCCCSGGGBCTG
T ss_pred             EECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECC-CCCCCCccchhhh
Confidence            344444444444445555566666666555443211                  224456666666 6666666654466


Q ss_pred             CCCCCcEEecCCcccee-e-cccc-cCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCC
Q 039257          111 LMPSLKVLKMSNCWNLK-F-LVGM-SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLR  187 (210)
Q Consensus       111 ~l~~L~~L~l~~~~~~~-l-~~~~-~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~  187 (210)
                      .+++|++|++++| .++ + +..+ ..+++|++|++++|.++.+|.. ..+++|+.|++++| .++.+|.. +..+++|+
T Consensus       142 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~  217 (317)
T 3o53_A          142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVT  217 (317)
T ss_dssp             GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS-CCCEECGG-GGGGTTCS
T ss_pred             ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC-cCCcchhh-hcccCccc
Confidence            7778888888888 777 4 4544 3577888888888887776543 35788888888888 77788776 77888888


Q ss_pred             eEEeeccccCCCcch
Q 039257          188 GLRKFITCASSQLKV  202 (210)
Q Consensus       188 ~L~l~~~~~~~~~~~  202 (210)
                      +|++++|.+. .+|.
T Consensus       218 ~L~L~~N~l~-~l~~  231 (317)
T 3o53_A          218 WISLRNNKLV-LIEK  231 (317)
T ss_dssp             EEECTTSCCC-EECT
T ss_pred             EEECcCCccc-chhh
Confidence            8888888775 3443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=3.1e-13  Score=97.10  Aligned_cols=124  Identities=21%  Similarity=0.358  Sum_probs=106.3

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      ..+.+.+..++.+|.. ..+.++.|++.+|.++.++..  ..+++|++|+++ ++.++.+++..|..+++|++|++++| 
T Consensus        10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~N-   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTILYLHEN-   86 (177)
T ss_dssp             TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECC-CCcceEeChhHccCCCccCEEECCCC-
Confidence            3577888888888843 347899999999999987764  678999999999 89999999877889999999999999 


Q ss_pred             cee-ec-ccccCCCcCCEEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCC
Q 039257          125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNK  174 (210)
Q Consensus       125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~  174 (210)
                      .++ +| ..+..+++|++|++++|.++.+|..+ ..+++|++|++++| .+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Ceec
Confidence            999 75 55788999999999999999888764 78999999999999 4443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.49  E-value=1.1e-13  Score=116.62  Aligned_cols=120  Identities=23%  Similarity=0.291  Sum_probs=104.1

Q ss_pred             CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccC
Q 039257           67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQ  145 (210)
Q Consensus        67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~  145 (210)
                      .++.|++++|.++.+|....+++|+.|+++ +|.++.+|.. +..+++|++|++++| .++ +| .++++++|++|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecC-cccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence            588999999999998887888999999999 8889999886 889999999999999 999 98 889999999999999


Q ss_pred             CcCccc--chhhhcCCCCcEEEccCCCCCCCCCcc---cccCCCCCCeEEe
Q 039257          146 NAIEEL--PEELKLLINLTCLNLRGTGQLNKIPRQ---LISNFSRLRGLRK  191 (210)
Q Consensus       146 ~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l  191 (210)
                      |.++.+  |..++.+++|+.|++++| .++.+|+.   .+..+++|+.|++
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence            999987  889999999999999999 77777653   1234788888863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=3.4e-13  Score=96.83  Aligned_cols=98  Identities=19%  Similarity=0.305  Sum_probs=51.3

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc-cccCCCcCCEEeccCC
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV-GMSKLGSLQLLDISQN  146 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~-~~~~l~~L~~L~l~~~  146 (210)
                      +.++++++.+..+|... .++|+.|+++ ++.++.+++..|.++++|++|++++| .++ +|. .+.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-PTDKQRLWLN-NNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCc-CCCCcEEEeC-CCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence            34555555555554432 1455555555 55555554443555555555555555 555 443 2345555555555555


Q ss_pred             cCcccchh-hhcCCCCcEEEccCC
Q 039257          147 AIEELPEE-LKLLINLTCLNLRGT  169 (210)
Q Consensus       147 ~l~~lp~~-~~~l~~L~~L~l~~~  169 (210)
                      .++.+|.. +..+++|++|++++|
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             ccceeCHHHhccccCCCEEEeCCC
Confidence            55555443 455555555555555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=119.55  Aligned_cols=136  Identities=17%  Similarity=0.211  Sum_probs=113.9

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCC
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQN  146 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~  146 (210)
                      +..+.+++.++.+|.  -.+++++|+++ ++.++.+++..|.++++|++|++++|.... + |..++++++|++|++++|
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            457778888888887  56899999999 899998876669999999999999993344 6 788999999999999999


Q ss_pred             cCccc-chhhhcCCCCcEEEccCCCCCCC-CCc-ccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          147 AIEEL-PEELKLLINLTCLNLRGTGQLNK-IPR-QLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       147 ~l~~l-p~~~~~l~~L~~L~l~~~~~~~~-lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      .++.+ |..++++++|++|++++| .+.. +|. ..++.+++|++|++++|.+.+..+...|.++
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L  147 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL  147 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred             cCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence            99966 788999999999999999 6654 443 3488999999999999999776665566554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=3.6e-13  Score=96.35  Aligned_cols=98  Identities=18%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCC
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQN  146 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~  146 (210)
                      +.++++++.++.+|... .++++.|+++ ++.++.+++..|.++++|++|++++| .++ +| ..+..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI-PTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccC-CCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence            34455555554444322 1444455555 44444444333444455555555555 444 33 22344444445555444


Q ss_pred             cCcccchh-hhcCCCCcEEEccCC
Q 039257          147 AIEELPEE-LKLLINLTCLNLRGT  169 (210)
Q Consensus       147 ~l~~lp~~-~~~l~~L~~L~l~~~  169 (210)
                      .++.+|.. +..+++|++|++++|
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCC
Confidence            44444432 344444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=6.6e-13  Score=111.74  Aligned_cols=131  Identities=23%  Similarity=0.266  Sum_probs=98.2

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+.+..++.+|..- +++++.|++++|.++.+|  ..+++|+.|+++ +|.++.+|.  +.+  +|++|++++| .+
T Consensus        62 ~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls-~N~l~~ip~--l~~--~L~~L~Ls~N-~l  132 (571)
T 3cvr_A           62 SELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDAC-DNRLSTLPE--LPA--SLKHLDVDNN-QL  132 (571)
T ss_dssp             SEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSCCCC--CCT--TCCEEECCSS-CC
T ss_pred             cEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEcc-CCCCCCcch--hhc--CCCEEECCCC-cC
Confidence            45778888888888632 478999999999999888  567899999999 888888887  443  7888888888 88


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      + +|.   .+++|++|++++|.++.+|.   .+++|+.|++++| .++.+|.  +.  ++|+.|++++|.+.
T Consensus       133 ~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          133 TMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred             CCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC
Confidence            8 776   56777777777777777765   4566777777777 5666665  33  56666666666553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.47  E-value=7e-13  Score=112.73  Aligned_cols=120  Identities=23%  Similarity=0.265  Sum_probs=85.5

Q ss_pred             CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257           66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS  144 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~  144 (210)
                      ++++.|++++|.++.++..  +++|+.|+++ ++.++.+|.    .+++|+.|++++| .++ +|   ..+++|++|+++
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~-~N~l~~l~~----~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls  249 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTL--PSELYKLWAY-NNRLTSLPA----LPSGLKELIVSGN-RLTSLP---VLPSELKELMVS  249 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC--CTTCCEEECC-SSCCSSCCC----CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECC
T ss_pred             CCCcEEECCCCCCCCCCCc--cchhhEEECc-CCcccccCC----CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECC
Confidence            3444444444444443321  2445555555 555554443    2367888888888 888 77   455788999999


Q ss_pred             CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      +|.++.+|.   .+++|+.|++++| .++.+|.. +..+++|+.|++++|++.+..+
T Consensus       250 ~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~-l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          250 GNRLTSLPM---LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSS-CCCSCCGG-GGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCCCCcCCc---ccccCcEEeCCCC-CCCcCCHH-HhhccccCEEEecCCCCCCcCH
Confidence            999888886   6788999999999 88899986 8999999999999999865544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.46  E-value=1.6e-12  Score=106.74  Aligned_cols=119  Identities=20%  Similarity=0.313  Sum_probs=57.0

Q ss_pred             CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc---------------
Q 039257           67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV---------------  130 (210)
Q Consensus        67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~---------------  130 (210)
                      +++.|++++|.++.++..  .++|++|+++ ++.++.+|.  +.++++|++|++++| .++ +|.               
T Consensus       112 ~L~~L~l~~n~l~~l~~~--~~~L~~L~L~-~n~l~~lp~--~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l  185 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALSDL--PPLLEYLGVS-NNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQL  185 (454)
T ss_dssp             TCCEEECCSSCCSCCCSC--CTTCCEEECC-SSCCSSCCC--CTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCC
T ss_pred             CCcEEECCCCccCcccCC--CCCCCEEECc-CCCCCCCcc--cCCCCCCCEEECCCC-cCcccCCCcccccEEECcCCcC
Confidence            344444444444333221  1345555555 444554442  445555555555555 444 443               


Q ss_pred             ----cccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          131 ----GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       131 ----~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                          .++++++|++|++++|.++.+|..   .++|+.|++++| .+..+|.  ++.+++|++|++++|.+.
T Consensus       186 ~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          186 EELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             CcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCC
Confidence                234444444444444444443321   134555555555 4445553  566666666666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.44  E-value=2.5e-12  Score=105.66  Aligned_cols=135  Identities=23%  Similarity=0.300  Sum_probs=92.2

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..++.+|.+..++++++|++++|.++++|..  ..+|+.|+++ ++.++.+|.  +..+++|++|++++| .++
T Consensus       135 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~-~n~l~~l~~--~~~l~~L~~L~l~~N-~l~  208 (454)
T 1jl5_A          135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAG-NNQLEELPE--LQNLPFLTAIYADNN-SLK  208 (454)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECC-SSCCSSCCC--CTTCTTCCEEECCSS-CCS
T ss_pred             EEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECc-CCcCCcCcc--ccCCCCCCEEECCCC-cCC
Confidence            3455556666667667777777777777777766543  3477777777 777777763  778888888888888 777


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                       +|...   .+|++|++++|.++.+| .++.+++|++|++++| .++.+|..    +++|+.|++++|.+.
T Consensus       209 ~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          209 KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNN-LLKTLPDL----PPSLEALNVRDNYLT  270 (454)
T ss_dssp             SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCSC----CTTCCEEECCSSCCS
T ss_pred             cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCC-cCCccccc----ccccCEEECCCCccc
Confidence             66432   46777888888777777 3677777777777777 66666642    245555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.44  E-value=3.7e-12  Score=108.31  Aligned_cols=116  Identities=24%  Similarity=0.281  Sum_probs=83.5

Q ss_pred             ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257           46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN  125 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  125 (210)
                      ...+.+.+..++.+|.... ++++.|++++|.++.++.  .+++|++|+++ ++.++.+|.    .+++|++|++++| .
T Consensus        42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~L~Ls~N-~  112 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVS-GNQLTSLPV----LPPGLLELSIFSN-P  112 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEEC-SCCCSCCCC----CCTTCCEEEECSC-C
T ss_pred             CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcC-CCcCCcCCC----CCCCCCEEECcCC-c
Confidence            3567888888888886433 789999999999888777  57889999999 888888776    5678888888888 7


Q ss_pred             ee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257          126 LK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR  177 (210)
Q Consensus       126 ~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~  177 (210)
                      ++ +|.   .+.+|++|++++|.++.+|..   +++|++|++++| .++.+|.
T Consensus       113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~  158 (622)
T 3g06_A          113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA  158 (622)
T ss_dssp             CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC
T ss_pred             CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC
Confidence            77 765   445666666666666666543   355666666665 4554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.42  E-value=1.7e-12  Score=93.16  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=51.7

Q ss_pred             cEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEcc
Q 039257           91 VTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLR  167 (210)
Q Consensus        91 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~  167 (210)
                      +.++++ ++.++.+|.. +  .+.|++|++++| .++ + |..+.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus        15 ~~l~~~-~n~l~~iP~~-~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQ-NIRLASVPAG-I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECC-SSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeC-CCCCCccCCC-c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            344555 5555555543 1  145555555555 555 3 34455555555555555555555443 2455555555555


Q ss_pred             CCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          168 GTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       168 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      +| .+..+|...+..+++|++|++++|++.
T Consensus        90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DN-HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            55 455555433455555555555555553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.7e-12  Score=91.69  Aligned_cols=103  Identities=23%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             cEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEcc
Q 039257           91 VTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLR  167 (210)
Q Consensus        91 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~  167 (210)
                      ++++++ ++.++.+|.. +  .+.+++|++++| .++ + |..+.++.+|++|++++|.++.+|.. +..+++|++|+++
T Consensus        12 ~~l~~s-~n~l~~ip~~-~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCS-GKSLASVPTG-I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TEEECT-TSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEeC-CCCcCccCcc-C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            345555 5555555543 1  245555555555 555 3 34455555555555555555555433 2455555555555


Q ss_pred             CCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          168 GTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       168 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      +| .++.+|...+..+++|++|++++|++...
T Consensus        87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            55 45555544355555555555555555433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=5e-15  Score=108.55  Aligned_cols=104  Identities=27%  Similarity=0.322  Sum_probs=63.1

Q ss_pred             ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257           62 VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL  140 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~  140 (210)
                      +..+++++.|++++|.++.++....+++|+.|+++ ++.+..+|.. +..+++|++|++++| .++ +| .++.+++|++
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~-~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEE-EEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred             HhcCCCCCEEECCCCCCccccccccCCCCCEEECC-CCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence            34455666666666666666533555666666666 5556666553 445566666666666 666 55 4555666666


Q ss_pred             EeccCCcCcccch--hhhcCCCCcEEEccCC
Q 039257          141 LDISQNAIEELPE--ELKLLINLTCLNLRGT  169 (210)
Q Consensus       141 L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~  169 (210)
                      |++++|.++.+|.  .+..+++|++|++++|
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            6666666665543  4556666666666666

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=4.4e-13  Score=105.55  Aligned_cols=107  Identities=21%  Similarity=0.234  Sum_probs=53.2

Q ss_pred             ccCCCCccEEEeecccccc--cCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee---ecccccCC
Q 039257           62 VKEWENVRRLSLMQNQIET--LSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK---FLVGMSKL  135 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l  135 (210)
                      ...+++++.|++++|.+..  ++.. ..+++|+.|+++ ++.+.......+..+++|++|++++|..++   ++..+.++
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE-GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT-TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc-CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            3445677777777776543  2222 455666666666 444443222225556666666666553233   23334445


Q ss_pred             CcCCEEeccCC-cCcc--cchhhhcCC-CCcEEEccCC
Q 039257          136 GSLQLLDISQN-AIEE--LPEELKLLI-NLTCLNLRGT  169 (210)
Q Consensus       136 ~~L~~L~l~~~-~l~~--lp~~~~~l~-~L~~L~l~~~  169 (210)
                      ++|++|++++| .++.  ++..+..++ +|++|++++|
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            55555555555 4442  333334444 4444444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=1.5e-14  Score=105.98  Aligned_cols=128  Identities=20%  Similarity=0.224  Sum_probs=105.1

Q ss_pred             ccEEEeecc--cccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEec
Q 039257           68 VRRLSLMQN--QIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDI  143 (210)
Q Consensus        68 l~~L~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l  143 (210)
                      ++...+.+.  .++.++.. ..+++|+.|+++ ++.++.+| . +..+++|++|++++| .++ +|..+..+++|++|++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls-~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECS-EEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECC-CCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence            444444443  33333323 668899999999 88899888 3 889999999999999 999 9988888899999999


Q ss_pred             cCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccCCCcc
Q 039257          144 SQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       144 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      ++|.++.+| .+..+++|++|++++| .++.++. ..+..+++|++|++++|.+.+..|
T Consensus       101 ~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          101 SYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             cCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            999999887 6889999999999999 7887764 338899999999999999866544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.28  E-value=1.8e-11  Score=97.16  Aligned_cols=135  Identities=15%  Similarity=0.114  Sum_probs=101.6

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce-e-ec-ccccCCCcCCE-Eecc
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL-K-FL-VGMSKLGSLQL-LDIS  144 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-l~-~~~~~l~~L~~-L~l~  144 (210)
                      +.++.++++++.+|... .++++.|+++ ++.++.+|+..|.++++|++|++++| .+ + +| ..+.+++++.. +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFV-LTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEE-SCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEcc-CCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhccc
Confidence            46778888888887643 3679999999 99999999877999999999999999 76 4 65 56778888765 5666


Q ss_pred             CCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          145 QNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       145 ~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      +|+++.+| ..+..+++|++|++++| .+..+|...+....++..+++.++.....++...|..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~  151 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG  151 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred             CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence            78888875 55688999999999998 7777776434455556666665554445555544443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=3.2e-11  Score=95.45  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=49.2

Q ss_pred             EEeecc-cccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCc
Q 039257           71 LSLMQN-QIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNA  147 (210)
Q Consensus        71 L~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~  147 (210)
                      ++..++ .++.+|....+.+|+.|++++.|.++.+++..|.++++|++|++++| .++ + |..+.++++|++|+|++|.
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence            344444 45555443344455555555115555555444555555555555555 555 3 3344555555555555555


Q ss_pred             CcccchhhhcCCCCcEEEccCC
Q 039257          148 IEELPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       148 l~~lp~~~~~l~~L~~L~l~~~  169 (210)
                      ++.+|..+.....|+.|++.+|
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSS
T ss_pred             cceeCHHHcccCCceEEEeeCC
Confidence            5555543332223555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.26  E-value=6.7e-12  Score=98.78  Aligned_cols=127  Identities=17%  Similarity=0.245  Sum_probs=52.6

Q ss_pred             CCCccEEEeecccccc-cCC-CCCCCCccEEEcccCC-CCcc--cchhHhcCCCCCcEEecCCcccee---ecccccCCC
Q 039257           65 WENVRRLSLMQNQIET-LSE-VPTCPHFVTLFLDFNG-ELKM--IADGFFQLMPSLKVLKMSNCWNLK---FLVGMSKLG  136 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l~  136 (210)
                      +++++.|++.+|.+.. .+. ...+++|++|+++ ++ .++.  ++.. +..+++|++|++++|..++   ++..+..++
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            3455555555554432 111 1334455555555 32 3332  2222 3444555555554442232   233344444


Q ss_pred             -cCCEEeccCCc--C--cccchhhhcCCCCcEEEccCCCCCC-CCCcccccCCCCCCeEEeecc
Q 039257          137 -SLQLLDISQNA--I--EELPEELKLLINLTCLNLRGTGQLN-KIPRQLISNFSRLRGLRKFIT  194 (210)
Q Consensus       137 -~L~~L~l~~~~--l--~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~  194 (210)
                       +|++|++++|.  +  ..+|..+..+++|+.|++++|..++ ..+.. ++.+++|++|++++|
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTC
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCC
Confidence             44555554442  2  1233334444444444444442122 12221 444444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.24  E-value=3.2e-12  Score=102.72  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             CCCCccEEEcccCCCCcc-----cchhHhcCCCCCcEEecCCccce-----e-ecccccCCCcCCEEeccCCcCcc----
Q 039257           86 TCPHFVTLFLDFNGELKM-----IADGFFQLMPSLKVLKMSNCWNL-----K-FLVGMSKLGSLQLLDISQNAIEE----  150 (210)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~-----~-l~~~~~~l~~L~~L~l~~~~l~~----  150 (210)
                      .+++|++|+++ ++.+..     +.+..+..+++|++|++++| .+     . +|..+..+++|++|++++|.++.    
T Consensus       185 ~~~~L~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          185 SHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hCCCcCEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            34566666666 555541     11212556667777777777 66     4 55666666777777777776653    


Q ss_pred             -cchhh--hcCCCCcEEEccCCCCCCC-----CCcccccCCCCCCeEEeeccccCCCc
Q 039257          151 -LPEEL--KLLINLTCLNLRGTGQLNK-----IPRQLISNFSRLRGLRKFITCASSQL  200 (210)
Q Consensus       151 -lp~~~--~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~~~~~  200 (210)
                       +|..+  +.+++|+.|++++| .++.     +|..+..++++|++|++++|.+.+..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             24444  23677777777777 5555     66542255677777777777775544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.20  E-value=3.5e-12  Score=102.48  Aligned_cols=107  Identities=22%  Similarity=0.265  Sum_probs=69.3

Q ss_pred             CCccEEEcccCCCCc--ccch--hHhcCCCCCcEEecCCcccee------e-cccccCCCcCCEEeccCCcC-----ccc
Q 039257           88 PHFVTLFLDFNGELK--MIAD--GFFQLMPSLKVLKMSNCWNLK------F-LVGMSKLGSLQLLDISQNAI-----EEL  151 (210)
Q Consensus        88 ~~L~~L~l~~~~~~~--~~~~--~~~~~l~~L~~L~l~~~~~~~------l-~~~~~~l~~L~~L~l~~~~l-----~~l  151 (210)
                      ++|++|+++ ++.+.  .++.  ..+..+++|++|++++| .++      + |..+..+++|++|++++|.+     ..+
T Consensus       159 ~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICG-RNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECC-SSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             CCCcEEECC-CCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence            567777777 66554  2221  12556777777777777 655      1 22566777777888877777     456


Q ss_pred             chhhhcCCCCcEEEccCCCCCCCC-----Ccccc--cCCCCCCeEEeeccccCC
Q 039257          152 PEELKLLINLTCLNLRGTGQLNKI-----PRQLI--SNFSRLRGLRKFITCASS  198 (210)
Q Consensus       152 p~~~~~l~~L~~L~l~~~~~~~~l-----p~~~~--~~l~~L~~L~l~~~~~~~  198 (210)
                      |..+..+++|+.|++++| .++..     +.. +  +.+++|++|++++|.+..
T Consensus       237 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDC-LLSARGAAAVVDA-FSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHGGGCTTCCEEECTTC-CCCHHHHHHHHHH-HHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHccCCCcCEEECCCC-CCchhhHHHHHHH-HhhccCCCeEEEECcCCcCCH
Confidence            666777777888888777 55543     332 4  337778888888877755

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=1.3e-10  Score=92.01  Aligned_cols=100  Identities=22%  Similarity=0.254  Sum_probs=79.0

Q ss_pred             EEEecCC-CCccCCCccCCCCccEEEeec-ccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           48 FLVCAGA-GLEEAPDVKEWENVRRLSLMQ-NQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        48 ~~~~~~~-~~~~~~~~~~~~~l~~L~l~~-~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      .+.|.+. .++.+|.+..+.+|+.|++++ |.++.++.  +..+++|+.|+++ +|.+..+++..|..+++|+.|++++|
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4577777 788888877777888999986 88888765  3778889999998 88888888776888999999999999


Q ss_pred             ccee-ecccccCCCcCCEEeccCCcCc
Q 039257          124 WNLK-FLVGMSKLGSLQLLDISQNAIE  149 (210)
Q Consensus       124 ~~~~-l~~~~~~l~~L~~L~l~~~~l~  149 (210)
                       .++ +|..+.....|++|++.+|.+.
T Consensus        91 -~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           91 -ALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             -CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             -ccceeCHHHcccCCceEEEeeCCCcc
Confidence             888 7654443334889999888876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.13  E-value=2.6e-11  Score=96.71  Aligned_cols=148  Identities=18%  Similarity=0.154  Sum_probs=94.2

Q ss_pred             EEEecCCCCccCCC------ccCCC-CccEEEeecccccccCCC--CC-----CCCccEEEcccCCCCcccchhH----h
Q 039257           48 FLVCAGAGLEEAPD------VKEWE-NVRRLSLMQNQIETLSEV--PT-----CPHFVTLFLDFNGELKMIADGF----F  109 (210)
Q Consensus        48 ~~~~~~~~~~~~~~------~~~~~-~l~~L~l~~~~~~~l~~~--~~-----~~~L~~L~l~~~~~~~~~~~~~----~  109 (210)
                      .+.+.+..+...+.      +..++ +++.|++++|.+......  ..     .++|++|+++ ++.++..+...    +
T Consensus        26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l  104 (362)
T 3goz_A           26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS-GNFLSYKSSDELVKTL  104 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHHHHHH
T ss_pred             EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc-CCcCChHHHHHHHHHH
Confidence            45566666655542      23444 788888888877654221  22     2778888888 77777655432    3


Q ss_pred             cCC-CCCcEEecCCcccee-ec-ccc----cC-CCcCCEEeccCCcCc-----ccchhhhcCC-CCcEEEccCCCCCCCC
Q 039257          110 QLM-PSLKVLKMSNCWNLK-FL-VGM----SK-LGSLQLLDISQNAIE-----ELPEELKLLI-NLTCLNLRGTGQLNKI  175 (210)
Q Consensus       110 ~~l-~~L~~L~l~~~~~~~-l~-~~~----~~-l~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L~l~~~~~~~~l  175 (210)
                      ..+ ++|++|++++| .++ .+ ..+    .. ..+|++|++++|.++     .++..+..++ +|++|++++| .++..
T Consensus       105 ~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~  182 (362)
T 3goz_A          105 AAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASK  182 (362)
T ss_dssp             HTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGS
T ss_pred             HhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchh
Confidence            344 78888888888 777 43 332    33 257888888888777     3344455555 7888888888 66655


Q ss_pred             Ccc----cccCC-CCCCeEEeeccccCC
Q 039257          176 PRQ----LISNF-SRLRGLRKFITCASS  198 (210)
Q Consensus       176 p~~----~~~~l-~~L~~L~l~~~~~~~  198 (210)
                      +..    .+... ++|++|++++|.+..
T Consensus       183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          183 NCAELAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             hHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence            432    13344 588888888888743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.08  E-value=4.8e-11  Score=95.12  Aligned_cols=148  Identities=17%  Similarity=0.169  Sum_probs=105.7

Q ss_pred             cEEEecCCCCccCC--CccC-----CCCccEEEeecccccccCCC------CCC-CCccEEEcccCCCCcccchhHh---
Q 039257           47 NFLVCAGAGLEEAP--DVKE-----WENVRRLSLMQNQIETLSEV------PTC-PHFVTLFLDFNGELKMIADGFF---  109 (210)
Q Consensus        47 ~~~~~~~~~~~~~~--~~~~-----~~~l~~L~l~~~~~~~l~~~------~~~-~~L~~L~l~~~~~~~~~~~~~~---  109 (210)
                      ..+.+.++.+....  .+..     .+.++.|++++|.++.....      ..+ ++|++|+++ ++.++..+...+   
T Consensus        54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~  132 (362)
T 3goz_A           54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WNDFSSKSSSEFKQA  132 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHHHHH
T ss_pred             eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCcCCcHHHHHHHHH
Confidence            34566777666542  1222     27899999999998764321      333 789999999 888887776433   


Q ss_pred             -cC-CCCCcEEecCCcccee-e-----cccccCCC-cCCEEeccCCcCcccc-h----hhhcC-CCCcEEEccCCCCCCC
Q 039257          110 -QL-MPSLKVLKMSNCWNLK-F-----LVGMSKLG-SLQLLDISQNAIEELP-E----ELKLL-INLTCLNLRGTGQLNK  174 (210)
Q Consensus       110 -~~-l~~L~~L~l~~~~~~~-l-----~~~~~~l~-~L~~L~l~~~~l~~lp-~----~~~~l-~~L~~L~l~~~~~~~~  174 (210)
                       .. ..+|++|++++| .++ .     +..+..++ +|++|++++|.++..+ .    .+... ++|+.|++++| .++.
T Consensus       133 l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~  210 (362)
T 3goz_A          133 FSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGL  210 (362)
T ss_dssp             HTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGG
T ss_pred             HHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCCh
Confidence             33 369999999999 776 2     33445555 8999999999987544 2    33445 59999999999 7776


Q ss_pred             -----CCcccccC-CCCCCeEEeeccccCC
Q 039257          175 -----IPRQLISN-FSRLRGLRKFITCASS  198 (210)
Q Consensus       175 -----lp~~~~~~-l~~L~~L~l~~~~~~~  198 (210)
                           ++.. +.. .++|++|++++|.+..
T Consensus       211 ~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          211 KSYAELAYI-FSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             SCHHHHHHH-HHHSCTTCCEEECCSSCCCC
T ss_pred             hHHHHHHHH-HhcCCCCceEEECcCCCCCc
Confidence                 5554 444 4699999999998844

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=8.9e-10  Score=86.62  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=17.9

Q ss_pred             CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      +++|+.+.+. . .++.++...|.++.+|+.++++++
T Consensus       100 ~~~L~~l~L~-~-~i~~I~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          100 KQTLEKVILS-E-KIKNIEDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             CTTCCC-CBC-T-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred             cCCCcEEECC-c-cccchhHHHhhcCcccceEEcCCC
Confidence            4555555555 3 455555544555555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=1.2e-09  Score=85.88  Aligned_cols=92  Identities=17%  Similarity=0.150  Sum_probs=71.7

Q ss_pred             CCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccc-hhhhcCCCCc-EEEccCCCCCCCCCcccccCCCCCC
Q 039257          112 MPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINLT-CLNLRGTGQLNKIPRQLISNFSRLR  187 (210)
Q Consensus       112 l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~-~L~l~~~~~~~~lp~~~~~~l~~L~  187 (210)
                      +++|+.+++++| .++ +| ..|.++.+|+.+++..| ++.++ ..+.++.+|+ .+++.+  .++.++...|..+++|+
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            678888888888 788 75 56778888888888886 67665 4567888888 888876  47788777788888899


Q ss_pred             eEEeeccccCCCcchhhhhhc
Q 039257          188 GLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       188 ~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      .+++.+|.+ ..++...|.++
T Consensus       301 ~l~l~~n~i-~~I~~~aF~~~  320 (329)
T 3sb4_A          301 YVLATGDKI-TTLGDELFGNG  320 (329)
T ss_dssp             EEEECSSCC-CEECTTTTCTT
T ss_pred             EEEeCCCcc-CccchhhhcCC
Confidence            998877776 66777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.96  E-value=1.2e-10  Score=95.41  Aligned_cols=128  Identities=20%  Similarity=0.200  Sum_probs=66.5

Q ss_pred             CCCCccEEEeeccccccc------CCC-CCCCCccEEEcccCCCCcc-----cchhHhcCCCCCcEEecCCcccee-e--
Q 039257           64 EWENVRRLSLMQNQIETL------SEV-PTCPHFVTLFLDFNGELKM-----IADGFFQLMPSLKVLKMSNCWNLK-F--  128 (210)
Q Consensus        64 ~~~~l~~L~l~~~~~~~l------~~~-~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-l--  128 (210)
                      .+++++.|++++|.+...      +.. ..+++|+.|+++ ++.++.     ++.. +..+++|++|++++| .++ .  
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~  301 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLCRV-LRAKESLKELSLAGN-ELGDEGA  301 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-TSCCCHHHHHHHHHH-HHHCTTCCEEECTTC-CCHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc-CCCCCHHHHHHHHHH-HhhCCCcceEECCCC-CCchHHH
Confidence            345667777777665431      111 235566666666 555554     2332 444555666666555 443 1  


Q ss_pred             --------------------------------cccccCCCcCCEEeccCCcCccc-chhhhc-----CCCCcEEEccCCC
Q 039257          129 --------------------------------LVGMSKLGSLQLLDISQNAIEEL-PEELKL-----LINLTCLNLRGTG  170 (210)
Q Consensus       129 --------------------------------~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~-----l~~L~~L~l~~~~  170 (210)
                                                      +..+..+++|++|++++|.++.. +..+..     .++|+.|++++| 
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-  380 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-  380 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred             HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-
Confidence                                            22233345555555555554422 122211     456666666666 


Q ss_pred             CCC-----CCCcccccCCCCCCeEEeecccc
Q 039257          171 QLN-----KIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       171 ~~~-----~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      .++     .+|.. +..+++|++|++++|.+
T Consensus       381 ~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          381 DVSDSSCSSLAAT-LLANHSLRELDLSNNCL  410 (461)
T ss_dssp             CCCHHHHHHHHHH-HHHCCCCCEEECCSSSC
T ss_pred             CCChhhHHHHHHH-HHhCCCccEEECCCCCC
Confidence            455     44543 55666777777776665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.90  E-value=2.8e-10  Score=91.10  Aligned_cols=129  Identities=18%  Similarity=0.166  Sum_probs=92.2

Q ss_pred             CCccEEEeecccccc--cCCC-CCCCCccEEEcccCCCCcccchhHh-----cCCCCCcEEecCCcccee------eccc
Q 039257           66 ENVRRLSLMQNQIET--LSEV-PTCPHFVTLFLDFNGELKMIADGFF-----QLMPSLKVLKMSNCWNLK------FLVG  131 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~------l~~~  131 (210)
                      ..++.|++++|.+..  +... ..+++|+.|+++ ++.++......+     ...+.|+.|++++| .++      ++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls-~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ-LNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECC-SSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcC-CCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence            578889999988754  2122 345678999999 777765443322     35678999999999 775      3345


Q ss_pred             ccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCcc----cccCCCCCCeEEeeccccC
Q 039257          132 MSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPRQ----LISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       132 ~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~~----~~~~l~~L~~L~l~~~~~~  197 (210)
                      +...++|++|++++|.++.     ++..+...++|+.|++++| .++.....    .+...++|++|++++|.+.
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            5677889999999998773     3455667788999999999 66643221    2445688999999999873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.84  E-value=5e-10  Score=91.66  Aligned_cols=131  Identities=18%  Similarity=0.215  Sum_probs=95.6

Q ss_pred             cCCCCccEEEeecccccc-----cCCC-CCCCCccEEEcccCCCCcccc-hhHhcCCC----CCcEEecCCcccee----
Q 039257           63 KEWENVRRLSLMQNQIET-----LSEV-PTCPHFVTLFLDFNGELKMIA-DGFFQLMP----SLKVLKMSNCWNLK----  127 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~----~L~~L~l~~~~~~~----  127 (210)
                      ..+++++.|++++|.+..     ++.. ..+++|++|+++ ++.+.... ..++..++    +|++|++++| .++    
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~  102 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  102 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-TCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-CCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence            455689999999998763     2332 557889999999 77776533 23344565    6999999999 766    


Q ss_pred             --ecccccCCCcCCEEeccCCcCccc-chhh-----hcCCCCcEEEccCCCCCCCC-----CcccccCCCCCCeEEeecc
Q 039257          128 --FLVGMSKLGSLQLLDISQNAIEEL-PEEL-----KLLINLTCLNLRGTGQLNKI-----PRQLISNFSRLRGLRKFIT  194 (210)
Q Consensus       128 --l~~~~~~l~~L~~L~l~~~~l~~l-p~~~-----~~l~~L~~L~l~~~~~~~~l-----p~~~~~~l~~L~~L~l~~~  194 (210)
                        ++..+..+++|++|++++|.++.. +..+     ...++|++|++++| .++..     +. .+..+++|++|++++|
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~-~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLAS-VLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHH-HHHHCTTCCEEECCSS
T ss_pred             HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHH-HHhhCCCCCEEECcCC
Confidence              367788899999999999987632 2222     23567999999999 66653     33 3667899999999999


Q ss_pred             ccC
Q 039257          195 CAS  197 (210)
Q Consensus       195 ~~~  197 (210)
                      .+.
T Consensus       181 ~i~  183 (461)
T 1z7x_W          181 DIN  183 (461)
T ss_dssp             BCH
T ss_pred             Ccc
Confidence            863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.68  E-value=4.1e-09  Score=84.38  Aligned_cols=129  Identities=17%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             CCccEEEeecccccccC-----CC--CCCCCccEEEcccCCCCcccch-hHhcCCCCCcEEecCCcccee-e-cccc---
Q 039257           66 ENVRRLSLMQNQIETLS-----EV--PTCPHFVTLFLDFNGELKMIAD-GFFQLMPSLKVLKMSNCWNLK-F-LVGM---  132 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~-----~~--~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-l-~~~~---  132 (210)
                      +.++.|++++|.+....     ..  ....+|+.|+++ ++.+..... .....+++|+.|++++| .++ . ...+   
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence            47889999999886521     11  234689999999 877764322 22345678999999999 887 3 2333   


Q ss_pred             --cCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCC----cccccCCCCCCeEEeeccccC
Q 039257          133 --SKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIP----RQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       133 --~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp----~~~~~~l~~L~~L~l~~~~~~  197 (210)
                        .....|++|++++|.++.     ++..+...++|++|++++| .++...    ...+...++|++|++++|.+.
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence              246789999999999874     4455677899999999999 665432    123667889999999999884

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.57  E-value=4.2e-08  Score=82.70  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=15.5

Q ss_pred             cCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257          110 QLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS  144 (210)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~  144 (210)
                      ..+++|+.|++++| .+. +|..+..+++|++|+++
T Consensus       217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEEC
T ss_pred             hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhccc
Confidence            34455555555555 444 44333444444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.50  E-value=9.1e-07  Score=71.43  Aligned_cols=139  Identities=14%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             cCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc-----------------
Q 039257           63 KEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW-----------------  124 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-----------------  124 (210)
                      ..+.+|+.+.+.++.++.++.. .....|+.+.+. .+ ++.++...|.++.+|+.+.+..+-                 
T Consensus       177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~  254 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVK  254 (401)
T ss_dssp             TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             hCcccCCeeecCCCcceEechhhEeecccCEEEeC-Cc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEE
Confidence            3445566666666655554443 223455555554 22 455555555555555555554320                 


Q ss_pred             ---cee-e-cccccCCCcCCEEeccCCcCc-----ccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeec
Q 039257          125 ---NLK-F-LVGMSKLGSLQLLDISQNAIE-----ELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFI  193 (210)
Q Consensus       125 ---~~~-l-~~~~~~l~~L~~L~l~~~~l~-----~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  193 (210)
                         .++ + +.+|.++.+|+.+.+.++.+.     .++ ..+..+++|+.+++..  .+..++...|..+++|+.+.+..
T Consensus       255 lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          255 LPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             EETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT
T ss_pred             eCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc
Confidence               122 3 234455556666666555433     232 3445566666666653  35666655566666677766633


Q ss_pred             cccCCCcchhhhhh
Q 039257          194 TCASSQLKVSTWEN  207 (210)
Q Consensus       194 ~~~~~~~~~~~f~~  207 (210)
                      +  ...++..+|.+
T Consensus       333 ~--l~~I~~~aF~~  344 (401)
T 4fdw_A          333 N--VTQINFSAFNN  344 (401)
T ss_dssp             T--CCEECTTSSSS
T ss_pred             c--ccEEcHHhCCC
Confidence            3  24455555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.41  E-value=3.1e-07  Score=77.38  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=59.0

Q ss_pred             CCCccEEEeecccccccC-----CC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce---e-ecccccC
Q 039257           65 WENVRRLSLMQNQIETLS-----EV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL---K-FLVGMSK  134 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~l~-----~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~-l~~~~~~  134 (210)
                      ++.|+.|++.++.++.+.     .. ..+++|++|++. .+.+..++.. +..+++|+.|+++.....   . .+..+..
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS-SCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc-CccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            345666666666554221     11 456889999998 6777776654 777888888888643111   1 2233444


Q ss_pred             CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCC
Q 039257          135 LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  169 (210)
                      +++|+.|+++++....+|..+..+++|++|++++|
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~  303 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA  303 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence            55555555555443444444455555555555555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.38  E-value=4.6e-07  Score=72.13  Aligned_cols=129  Identities=13%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             CCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHh--cCCCCCcEEecCCc-------ccee-ecccc-
Q 039257           64 EWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFF--QLMPSLKVLKMSNC-------WNLK-FLVGM-  132 (210)
Q Consensus        64 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~-------~~~~-l~~~~-  132 (210)
                      .++.|+.|.+.++.-..++. ..+++|+.|.+. .+.+..-....+  ..+++|+.|+++.+       ..+. +...+ 
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~-~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEII-SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEE-CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             cCCCCcEEEEeCCCCceecc-ccCCCCcEEEEe-cCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            44678888888773222333 237788888888 665543221112  36889999987531       0122 22223 


Q ss_pred             -cCCCcCCEEeccCCcCcc-cchhh---hcCCCCcEEEccCCCCCCC-----CCcccccCCCCCCeEEeecccc
Q 039257          133 -SKLGSLQLLDISQNAIEE-LPEEL---KLLINLTCLNLRGTGQLNK-----IPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       133 -~~l~~L~~L~l~~~~l~~-lp~~~---~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                       ..+++|++|++.+|.+.. .+..+   ..+++|++|+++.| .++.     ++.. +..+++|+.|++++|.+
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDH-VDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT-HHHHTTCSEEECCSBBC
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhh-cccCCcceEEECCCCcC
Confidence             247889999999887762 22223   25778999999888 6655     2322 45678999999988875

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.36  E-value=1.1e-07  Score=80.22  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=19.6

Q ss_pred             cCCCCcEEEccCCCCCCCC-CcccccCCCCCCeEEeecc
Q 039257          157 LLINLTCLNLRGTGQLNKI-PRQLISNFSRLRGLRKFIT  194 (210)
Q Consensus       157 ~l~~L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~  194 (210)
                      .+++|+.|++++| .++.. ....+..+++|++|++++|
T Consensus       287 ~~~~L~~L~L~~~-~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTC-CCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCC-CCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            4556666666666 23321 1112345666777776655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.33  E-value=1.1e-07  Score=80.18  Aligned_cols=127  Identities=19%  Similarity=0.161  Sum_probs=78.0

Q ss_pred             CCCccEEEeecccccccC--CC-CCCCCccEEEcccCCCCcc--cchhHhcCCCCCcEEecCCcccee-e-ccccc----
Q 039257           65 WENVRRLSLMQNQIETLS--EV-PTCPHFVTLFLDFNGELKM--IADGFFQLMPSLKVLKMSNCWNLK-F-LVGMS----  133 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~l~--~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~----  133 (210)
                      +++++.|+++++.+....  .. ..+++|++|++.++..+..  ++. .+..+++|++|++++| .++ . +..+.    
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRES-DVDDVSGHWLSHFPD  181 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTC-EEECCCGGGGGGSCT
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCC-ccCCcchHHHHHHhh
Confidence            457888888877654311  11 2467888888873324443  222 2457888888888888 665 2 33333    


Q ss_pred             CCCcCCEEeccCCc--Cc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecc
Q 039257          134 KLGSLQLLDISQNA--IE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFIT  194 (210)
Q Consensus       134 ~l~~L~~L~l~~~~--l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~  194 (210)
                      .+++|++|++++|.  +.  .++.-...+++|+.|++++|..+..+|.. +..+++|++|++..+
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY  245 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence            45688888888875  22  22222345688888888887555555553 666777777775433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=6.4e-07  Score=64.50  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             CCCCCccEEEcccCC-CCcc-----cchhHhcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc--
Q 039257           85 PTCPHFVTLFLDFNG-ELKM-----IADGFFQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE--  150 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~--  150 (210)
                      ...+.|++|+++ ++ .+..     +... +...+.|++|++++| .+.      +.+.+...+.|++|++++|.+..  
T Consensus        33 ~~~~~L~~L~L~-~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           33 NNDPDLEEVNLN-NIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             TTCTTCCEEECT-TCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCCEEEec-CCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            446778888888 66 6653     2222 556788899999988 776      23445556788999999998773  


Q ss_pred             ---cchhhhcCCCCcEEEc--cCCCCCCCC-----CcccccCCCCCCeEEeecccc
Q 039257          151 ---LPEELKLLINLTCLNL--RGTGQLNKI-----PRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       151 ---lp~~~~~l~~L~~L~l--~~~~~~~~l-----p~~~~~~l~~L~~L~l~~~~~  196 (210)
                         +...+...++|++|++  ++| .++.-     .. .+...++|++|++++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence               3455667778999999  777 55542     22 245568899999988876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.30  E-value=4.9e-07  Score=64.36  Aligned_cols=86  Identities=14%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             CCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCC----CcCCEEeccCC-cCccc-chhhhcCC
Q 039257           88 PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKL----GSLQLLDISQN-AIEEL-PEELKLLI  159 (210)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l----~~L~~L~l~~~-~l~~l-p~~~~~l~  159 (210)
                      .+|+.|+++ ++.++...-..+.++++|+.|++++|..++ - -..+..+    ++|++|++++| +++.- -..+.+++
T Consensus        61 ~~L~~LDLs-~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDAT-DSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEE-SCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCc-CCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            467888888 555665443335677788888888775455 1 2334443    35777777776 35521 13445677


Q ss_pred             CCcEEEccCCCCCCC
Q 039257          160 NLTCLNLRGTGQLNK  174 (210)
Q Consensus       160 ~L~~L~l~~~~~~~~  174 (210)
                      +|++|++++|+.+++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            777777777755554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.27  E-value=1e-05  Score=65.24  Aligned_cols=103  Identities=14%  Similarity=0.242  Sum_probs=50.4

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCC
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINL  161 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L  161 (210)
                      ..+.+|+.+.+. .+.++.++...|. ..+|+.+.+..  .++ + ..+|.++.+|+.+.+..+ ++.++.. +.+ .+|
T Consensus       177 ~~c~~L~~l~l~-~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          177 YYCYNLKKADLS-KTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             TTCTTCCEEECT-TSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred             hCcccCCeeecC-CCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence            444555555555 5555555555443 35555555543  244 4 345556666666666542 3333221 122 344


Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257          162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC  195 (210)
Q Consensus       162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  195 (210)
                      +.+.+..  .+..++...|..+++|+.+.+.++.
T Consensus       251 ~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          251 TTVKLPN--GVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             SEEEEET--TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             cEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc
Confidence            4444422  2445544445555566666555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=3.5e-06  Score=59.93  Aligned_cols=85  Identities=13%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             CCcEEecCCcccee-e-cccccCCCcCCEEeccCCc-Cccc-chhhhcC----CCCcEEEccCCCCCCCCCcccccCCCC
Q 039257          114 SLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNA-IEEL-PEELKLL----INLTCLNLRGTGQLNKIPRQLISNFSR  185 (210)
Q Consensus       114 ~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~-l~~l-p~~~~~l----~~L~~L~l~~~~~~~~lp~~~~~~l~~  185 (210)
                      .|+.||++++ .++ . -..+.++++|+.|++++|. ++.- -..+..+    ++|++|++++|..+++-.-..+.++++
T Consensus        62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            5677777777 566 2 2445667777777777773 5421 1223332    357777777775565533333566777


Q ss_pred             CCeEEeeccccCCC
Q 039257          186 LRGLRKFITCASSQ  199 (210)
Q Consensus       186 L~~L~l~~~~~~~~  199 (210)
                      |++|++++++..++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            77777777765554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.16  E-value=1.5e-06  Score=66.19  Aligned_cols=78  Identities=26%  Similarity=0.327  Sum_probs=39.2

Q ss_pred             CCCCCcEEecCCcccee-ec---ccccCCCcCCEEeccCCcCcccchhhhcCC--CCcEEEccCCCCCCCCCc------c
Q 039257          111 LMPSLKVLKMSNCWNLK-FL---VGMSKLGSLQLLDISQNAIEELPEELKLLI--NLTCLNLRGTGQLNKIPR------Q  178 (210)
Q Consensus       111 ~l~~L~~L~l~~~~~~~-l~---~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~------~  178 (210)
                      .++.|+.|++++| .++ ++   ..+..+++|+.|+|++|.++.+ ..+..+.  +|+.|++++|+....+|.      .
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4556666666666 555 32   3344556666666666655544 2233333  566666666632222331      1


Q ss_pred             cccCCCCCCeEE
Q 039257          179 LISNFSRLRGLR  190 (210)
Q Consensus       179 ~~~~l~~L~~L~  190 (210)
                      ++..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            244555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.13  E-value=3.1e-06  Score=64.43  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             EecCCcccee-ecc----cccCCCcCCEEeccCCcCcccc---hhhhcCCCCcEEEccCCCCCCCCCcccccCCC--CCC
Q 039257          118 LKMSNCWNLK-FLV----GMSKLGSLQLLDISQNAIEELP---EELKLLINLTCLNLRGTGQLNKIPRQLISNFS--RLR  187 (210)
Q Consensus       118 L~l~~~~~~~-l~~----~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~--~L~  187 (210)
                      ++++.| ... ++.    ...++++|+.|++++|.++.++   ..+..+++|+.|+|++| .+..+..  +..++  +|+
T Consensus       148 l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~  223 (267)
T 3rw6_A          148 IDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLE  223 (267)
T ss_dssp             CCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCS
T ss_pred             ccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcc
Confidence            455566 444 332    1246889999999999988654   56679999999999999 7887743  55555  999


Q ss_pred             eEEeeccccCCCcc
Q 039257          188 GLRKFITCASSQLK  201 (210)
Q Consensus       188 ~L~l~~~~~~~~~~  201 (210)
                      .|++++|++.+.+|
T Consensus       224 ~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          224 ELWLDGNSLCDTFR  237 (267)
T ss_dssp             EEECTTSTTGGGCS
T ss_pred             eEEccCCcCccccC
Confidence            99999999987665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.03  E-value=5.6e-06  Score=59.50  Aligned_cols=102  Identities=14%  Similarity=0.119  Sum_probs=77.1

Q ss_pred             CCccEEEeecc-cccc-----cCCC-CCCCCccEEEcccCCCCcccc----hhHhcCCCCCcEEecCCcccee------e
Q 039257           66 ENVRRLSLMQN-QIET-----LSEV-PTCPHFVTLFLDFNGELKMIA----DGFFQLMPSLKVLKMSNCWNLK------F  128 (210)
Q Consensus        66 ~~l~~L~l~~~-~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~------l  128 (210)
                      +.++.|++++| .+..     +... ...++|++|+++ ++.+..-.    ...+...+.|++|++++| .++      +
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l  113 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILAL  113 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHH
Confidence            57999999998 7753     2121 556789999999 88887422    122556789999999999 887      2


Q ss_pred             cccccCCCcCCEEec--cCCcCcc-----cchhhhcCCCCcEEEccCC
Q 039257          129 LVGMSKLGSLQLLDI--SQNAIEE-----LPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       129 ~~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~~  169 (210)
                      ...+.....|++|++  ++|.+..     +...+...++|+.|++++|
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            466777788999999  8898873     3345566789999999998

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.75  E-value=4e-05  Score=60.95  Aligned_cols=126  Identities=15%  Similarity=0.277  Sum_probs=82.2

Q ss_pred             CCCccEEEeecccccc--cCCC--CCCCCccEEEcccC-C------CCcccchhHh--cCCCCCcEEecCCcccee--ec
Q 039257           65 WENVRRLSLMQNQIET--LSEV--PTCPHFVTLFLDFN-G------ELKMIADGFF--QLMPSLKVLKMSNCWNLK--FL  129 (210)
Q Consensus        65 ~~~l~~L~l~~~~~~~--l~~~--~~~~~L~~L~l~~~-~------~~~~~~~~~~--~~l~~L~~L~l~~~~~~~--l~  129 (210)
                      .++|+.|.+..+.+..  +...  ..+++|+.|+++.+ +      .+..+... +  ..+++|++|++.+| .+.  .+
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~-~i~~~~~  269 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDA-EEQNVVV  269 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESC-TTHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCC-CCchHHH
Confidence            5789999999887653  1111  36889999988521 1      12222222 2  35899999999998 765  33


Q ss_pred             ccc---cCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCcccccC-CCCCCeEEeeccc
Q 039257          130 VGM---SKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPRQLISN-FSRLRGLRKFITC  195 (210)
Q Consensus       130 ~~~---~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~-l~~L~~L~l~~~~  195 (210)
                      ..+   ..+++|++|+++.|.+..     ++..+.++++|+.|++++| .++.--...+.. +  ...++++.+.
T Consensus       270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence            222   357899999999998874     4455567899999999998 554322111222 2  3567777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.68  E-value=0.00041  Score=55.12  Aligned_cols=114  Identities=17%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccc-hhhhcCCCC
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINL  161 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L  161 (210)
                      ..+..|+.+.+. .+ ++.++...|.++.+|+.+.+..+  +. ++ ..+.++.+|+.+.+..+.++.++ ..+.++.+|
T Consensus       237 ~~~~~L~~i~lp-~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          237 YGMKALDEIAIP-KN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTCSSCCEEEEC-TT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cCCccceEEEcC-CC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            556677777775 33 66677666778888888887654  44 53 56777888888888877777765 456778888


Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257          162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE  206 (210)
Q Consensus       162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~  206 (210)
                      +.+.+..+  ++.++..+|.++++|+.+.+..+  ...+...+|.
T Consensus       313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~  353 (379)
T 4h09_A          313 SSVTLPTA--LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFE  353 (379)
T ss_dssp             CEEECCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTT
T ss_pred             CEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhh
Confidence            88888654  77787777888888888877433  2445555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.49  E-value=0.00022  Score=48.06  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             EEeccCCcCc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257          140 LLDISQNAIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       140 ~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~  197 (210)
                      .++-+++.++  .+|..+  ..++++|+|++| .++.+|..+|..+++|+.|++.+|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence            4455555555  555432  234666666666 566666555566666666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.22  E-value=0.0036  Score=50.01  Aligned_cols=104  Identities=18%  Similarity=0.298  Sum_probs=75.9

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccc-hhhhcCCCC
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINL  161 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L  161 (210)
                      ..+..|+.+.+. .. +..++...|.++..|+.+.+..  .++ ++ ..|.++.+|+.+.+..+ ++.+. ..+.++.+|
T Consensus       262 ~~c~~L~~i~lp-~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          262 DSCAYLASVKMP-DS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTCSSCCEEECC-TT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eecccccEEecc-cc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            556777777775 33 4456666688888888888864  455 64 66778888888888754 55554 456788889


Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257          162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC  195 (210)
Q Consensus       162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~  195 (210)
                      +.+.+..+  ++.++..+|.++++|+.+++.++.
T Consensus       337 ~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          337 ERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence            98888644  788887778888999998887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.99  E-value=0.0096  Score=47.52  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=64.4

Q ss_pred             cchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccc
Q 039257          104 IADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLI  180 (210)
Q Consensus       104 ~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~  180 (210)
                      ++...|..+.+|+.+.+..+  ++ + ..++.++.+|+.+++.. .++.++ ..+.++.+|+.+++..+  +..++..+|
T Consensus       288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF  362 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAF  362 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTB
T ss_pred             eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHh
Confidence            44444677788888887654  55 5 46677888999988864 366664 46678899999988765  788888778


Q ss_pred             cCCCCCCeEEeecc
Q 039257          181 SNFSRLRGLRKFIT  194 (210)
Q Consensus       181 ~~l~~L~~L~l~~~  194 (210)
                      ..+++|+.+.+..+
T Consensus       363 ~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          363 QGCINLKKVELPKR  376 (394)
T ss_dssp             TTCTTCCEEEEEGG
T ss_pred             hCCCCCCEEEECCC
Confidence            99999999998654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.97  E-value=0.0002  Score=60.09  Aligned_cols=38  Identities=8%  Similarity=-0.099  Sum_probs=32.4

Q ss_pred             hHHHHHhHhccceecC---CCeeEehHHHHHHHHHHHhhhc
Q 039257            5 YIVGTLVHVCLLEEIE---DDKVKMLDVVRDMALWIACETE   42 (210)
Q Consensus         5 ~~~~~L~~~~l~~~~~---~~~~~~hd~~~~~~~~~~~~~~   42 (210)
                      +||++|++++|+++..   ...|+|||++|++|+.++.+.+
T Consensus       432 ~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          432 DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT  472 (549)
T ss_dssp             HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred             HHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence            3999999999999853   5689999999999998876544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.93  E-value=0.019  Score=45.45  Aligned_cols=115  Identities=12%  Similarity=0.206  Sum_probs=85.7

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCC
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINL  161 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L  161 (210)
                      ..+..++.+.+. . .+..++...|.++..|+.+.+..+  ++ + ...+.++..|+.+.+..+ ++.++ ..+..+.+|
T Consensus       214 ~~~~~l~~i~~~-~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          214 SYGKNLKKITIT-S-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTCSSCSEEECC-T-TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccceeeec-c-ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            445667777664 3 356666666888889999888765  44 5 466777888998888653 55555 356788999


Q ss_pred             cEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      +.+.+.++ .++.++...|.++.+|+.+.+..+  ...++..+|.+
T Consensus       289 ~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~  331 (379)
T 4h09_A          289 TKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKN  331 (379)
T ss_dssp             CEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred             cccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhC
Confidence            99999887 788998888999999999999543  35677777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.82  E-value=0.0048  Score=49.27  Aligned_cols=37  Identities=14%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeec
Q 039257          155 LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFI  193 (210)
Q Consensus       155 ~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  193 (210)
                      +.++.+|+.+.+..+  +..++...+..+.+|+.+.+..
T Consensus       158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence            445556666666443  3445554455566666655543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.80  E-value=0.0073  Score=48.21  Aligned_cols=102  Identities=18%  Similarity=0.238  Sum_probs=77.1

Q ss_pred             CcccchhHhcCCCCCcEEecCCccceee-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257          101 LKMIADGFFQLMPSLKVLKMSNCWNLKF-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQ  178 (210)
Q Consensus       101 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~  178 (210)
                      +..+....|.++..|+.+.+..+ ...+ ...+.++..|+.+.+. +.++.++ ..+.++.+|+.+++..+  ++.++..
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~  328 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD  328 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred             ceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh
Confidence            33455555788888999988776 4444 5677888999999886 3566665 45678899999999764  7888887


Q ss_pred             cccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          179 LISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       179 ~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      .|..+++|+.+.+..+  ...++..+|.+.
T Consensus       329 aF~~C~~L~~i~ip~s--v~~I~~~aF~~C  356 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS--VTKIPESAFSNC  356 (394)
T ss_dssp             TTTTCTTCCEEEECTT--CCBCCGGGGTTC
T ss_pred             HhhCCCCCCEEEECcc--cCEEhHhHhhCC
Confidence            8999999999999543  367788888753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.35  E-value=0.0088  Score=40.09  Aligned_cols=34  Identities=18%  Similarity=0.420  Sum_probs=24.2

Q ss_pred             CccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      +++.|+++ +|.++.++.+.|..+++|++|++++|
T Consensus        32 ~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           32 DTTELVLT-GNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCEEECC-CCcCCccChhhhhhccccCEEEecCC
Confidence            46667777 77777777666677777777777777

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.00  E-value=0.053  Score=39.03  Aligned_cols=107  Identities=8%  Similarity=0.049  Sum_probs=64.1

Q ss_pred             CCCccEEEcccCC-CCcccc----hhHhcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----
Q 039257           87 CPHFVTLFLDFNG-ELKMIA----DGFFQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----  150 (210)
Q Consensus        87 ~~~L~~L~l~~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----  150 (210)
                      -+.|+.|+++ ++ .+..-.    ...+..-..|+.|++++| .+.      +.+.+..=..|+.|+|++|.|..     
T Consensus        40 n~~L~~L~L~-~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           40 DTDLKEVNIN-NMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             CSSCCEEECT-TCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCccEEECC-CCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            4567788887 53 555311    122556678888888888 776      12333344678888888888772     


Q ss_pred             cchhhhcCCCCcEEEccCCCCCCCCCc-------ccccCCCCCCeEEeecccc
Q 039257          151 LPEELKLLINLTCLNLRGTGQLNKIPR-------QLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       151 lp~~~~~l~~L~~L~l~~~~~~~~lp~-------~~~~~l~~L~~L~l~~~~~  196 (210)
                      +-+.+..-+.|+.|++++| ....+..       .++..=+.|+.|+++.|..
T Consensus       118 la~aL~~N~tL~~L~L~n~-~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCC-cCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            2233344456888888765 2212221       1133446788888876654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.44  E-value=0.025  Score=51.53  Aligned_cols=40  Identities=15%  Similarity=-0.036  Sum_probs=33.5

Q ss_pred             hHhhHHHHHhHhccceecCCC---eeEehHHHHHHHHHHHhhh
Q 039257            2 RGYYIVGTLVHVCLLEEIEDD---KVKMLDVVRDMALWIACET   41 (210)
Q Consensus         2 ~~~~~~~~L~~~~l~~~~~~~---~~~~hd~~~~~~~~~~~~~   41 (210)
                      .++.++++|++++|++.....   .|+|||+++++++..+.+.
T Consensus       410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            478899999999999986543   5999999999999876543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.95  E-value=0.19  Score=36.15  Aligned_cols=85  Identities=13%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             hcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257          109 FQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPR  177 (210)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~  177 (210)
                      ...-+.|+.|+++++..+.      +.+.+..=..|+.|++++|.+..     +...+..=+.|+.|+|+.| .++.-..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence            4567789999998742443      34556666789999999998873     2234445578999999999 6654221


Q ss_pred             ----ccccCCCCCCeEEeecc
Q 039257          178 ----QLISNFSRLRGLRKFIT  194 (210)
Q Consensus       178 ----~~~~~l~~L~~L~l~~~  194 (210)
                          +.+..=+.|+.|+++++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence                12445567999999765

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=88.61  E-value=0.19  Score=45.42  Aligned_cols=34  Identities=12%  Similarity=0.271  Sum_probs=29.1

Q ss_pred             hHhhHHHHHhHhccceec-CCCeeEehHHHHHHHH
Q 039257            2 RGYYIVGTLVHVCLLEEI-EDDKVKMLDVVRDMAL   35 (210)
Q Consensus         2 ~~~~~~~~L~~~~l~~~~-~~~~~~~hd~~~~~~~   35 (210)
                      .++.++++|++++||+.. ....|+|||++++++.
T Consensus       403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV  437 (1221)
T ss_dssp             HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred             HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence            478899999999999985 3678999999998653

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=86.89  E-value=0.37  Score=40.40  Aligned_cols=36  Identities=17%  Similarity=-0.036  Sum_probs=30.4

Q ss_pred             hHhhHHHHHhHhccceecC---CCeeEehHHHHHHHHHH
Q 039257            2 RGYYIVGTLVHVCLLEEIE---DDKVKMLDVVRDMALWI   37 (210)
Q Consensus         2 ~~~~~~~~L~~~~l~~~~~---~~~~~~hd~~~~~~~~~   37 (210)
                      .++.++++|++++||+...   ...|+||+++++++...
T Consensus       410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence            3678999999999998643   35799999999999866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	210
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 8/145 (5%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
            +  L  A   +     +     +  L L  NQI  +S +        L L+ N   ++ 
Sbjct: 242 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN---QLE 298

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCL 164
                  + +L  L +    N+  +  +S L  LQ L  + N + ++   L  L N+  L
Sbjct: 299 DISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWL 356

Query: 165 NLRGTGQLNKIPRQLISNFSRLRGL 189
           +       +  P   ++N +R+  L
Sbjct: 357 SAGHNQISDLTP---LANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 5/124 (4%)

Query: 45  KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMI 104
           K+  L      +     +     +  L L +NQ+E +S +    +   L L FN    + 
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 105 ADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCL 164
                  +  L+ L  +N   +  +  ++ L ++  L    N I +L   L  L  +T L
Sbjct: 324 P---VSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQL 378

Query: 165 NLRG 168
            L  
Sbjct: 379 GLND 382

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 69  RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKF 128
           R L L    +  L  +        L L  N  L+ +      L   L+VL+ S+    + 
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPALAALR-CLEVLQASDNAL-EN 57

Query: 129 LVGMSKLGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186
           + G++ L  LQ L +  N +++    + L     L  LNL+G   L +           L
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEML 116

Query: 187 RGLRKFIT 194
             +   +T
Sbjct: 117 PSVSSILT 124

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 101 LKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQNAIEELPEELKLLIN 160
                     L PSL+ L +SN   L  L  +     L+ L  S N + E+PE  +   N
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHLAEVPELPQ---N 325

Query: 161 LTCLNLRGTGQLNKIPRQLISNFSRLR 187
           L  L++     L + P  +  +   LR
Sbjct: 326 LKQLHVEYN-PLREFP-DIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 87  CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKFLVGMSKLGSLQLLDISQN 146
            P    L +  N +L  +        P L+ L  S   +L  +       +L+ L +  N
Sbjct: 283 PPSLEELNVSNN-KLIELPALP----PRLERLIASFN-HLAEVP--ELPQNLKQLHVEYN 334

Query: 147 AIEELPEELKLLINL 161
            + E P+  + + +L
Sbjct: 335 PLREFPDIPESVEDL 349

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 14/134 (10%)

Query: 67  NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM-IADGFFQLMPSLKVLKMSNCWN 125
           ++  L L  N+I  +             L  +      + +G     P L+ L ++N   
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 126 LKFLVGMSKLGSLQLLDISQNAIEELPEE-------LKLLINLTCLNLRGTGQLNKIPRQ 178
           +K   G++    +Q++ +  N I  +               + + ++L      N +   
Sbjct: 232 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS----NPVQYW 287

Query: 179 LI--SNFSRLRGLR 190
            I  S F  +    
Sbjct: 288 EIQPSTFRCVYVRA 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	210
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.87
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.03
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.23

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.1e-16  Score=114.39  Aligned_cols=151  Identities=21%  Similarity=0.343  Sum_probs=129.3

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..++.++.+..++++++|++++|+++.++....+++|+.|+++ .+.+..++.  +.+++.|+.++++++ ...
T Consensus        44 ~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~-~n~~~~~~~--l~~l~~L~~L~l~~~-~~~  119 (199)
T d2omxa2          44 TLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTLFNN-QIT  119 (199)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEECCSS-CCC
T ss_pred             EEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccc-ccccccccc--ccccccccccccccc-ccc
Confidence            5677888888888888999999999999999988777889999999999 888888876  789999999999998 777


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcch-hhh
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKV-STW  205 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-~~f  205 (210)
                       ++ .+..+++|+.|++++|.+..+| .+..+++++.|++.+| .++.+++  ++++++|++|++++|++. .++. ..+
T Consensus       120 ~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~--l~~l~~L~~L~ls~N~i~-~i~~l~~L  193 (199)
T d2omxa2         120 DID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSN-QVTDLKP--LANLTTLERLDISSNKVS-DISVLAKL  193 (199)
T ss_dssp             CCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-CCGGGGGC
T ss_pred             ccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccc-cccCCcc--ccCCCCCCEEECCCCCCC-CCccccCC
Confidence             54 4778999999999999988775 5788999999999999 8889886  899999999999999874 4442 344


Q ss_pred             hhc
Q 039257          206 ENL  208 (210)
Q Consensus       206 ~~l  208 (210)
                      .+|
T Consensus       194 ~~L  196 (199)
T d2omxa2         194 TNL  196 (199)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-16  Score=119.63  Aligned_cols=151  Identities=23%  Similarity=0.268  Sum_probs=106.4

Q ss_pred             EEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      +.|.+.+++.+|..- .+.++.|++++|.++.++..  ..+++|+.|+++ ++.++.++.  +..+++|++|++++| .+
T Consensus        15 v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~-~N~l~~l~~--~~~l~~L~~L~Ls~N-~l   89 (266)
T d1p9ag_          15 VNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQV--DGTLPVLGTLDLSHN-QL   89 (266)
T ss_dssp             EECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECT-TSCCCEEEC--CSCCTTCCEEECCSS-CC
T ss_pred             EEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccc-ccccccccc--ccccccccccccccc-cc
Confidence            567778888887421 24688888888888776543  667788888888 777777765  466777777777777 77


Q ss_pred             e-ecccccCCCcCCEEeccCCcCc------------------------ccch-hhhcCCCCcEEEccCCCCCCCCCcccc
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIE------------------------ELPE-ELKLLINLTCLNLRGTGQLNKIPRQLI  180 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~------------------------~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~  180 (210)
                      + .+..+.++++|++|+++++.+.                        .+|. .+..+++++.+++++| .++.+|...+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~  168 (266)
T d1p9ag_          90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLL  168 (266)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTT
T ss_pred             cccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc-cccccCcccc
Confidence            6 6666666666666666655444                        3332 2345678888888888 7778777667


Q ss_pred             cCCCCCCeEEeeccccCCCcchhhhh
Q 039257          181 SNFSRLRGLRKFITCASSQLKVSTWE  206 (210)
Q Consensus       181 ~~l~~L~~L~l~~~~~~~~~~~~~f~  206 (210)
                      ..+++|++|++++|.+. .+|.+.|.
T Consensus       169 ~~l~~L~~L~Ls~N~L~-~lp~~~~~  193 (266)
T d1p9ag_         169 NGLENLDTLLLQENSLY-TIPKGFFG  193 (266)
T ss_dssp             TTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             ccccccceeecccCCCc-ccChhHCC
Confidence            88888999999888875 67765553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.1e-16  Score=118.38  Aligned_cols=148  Identities=22%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      .+.+.++.++.++....+++|+.|++++|.++..+.. ..+++|+.|+++ ++.+..++...+..+.+++.|++++| .+
T Consensus        59 ~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~l~~l~~L~l~~n-~l  136 (266)
T d1p9ag_          59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELYLKGN-EL  136 (266)
T ss_dssp             EEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEECTTS-CC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeecccccccccccccccccc-cc
Confidence            3445555555555555556666666666666554443 555666666666 55566555555666777777777777 77


Q ss_pred             e-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          127 K-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       127 ~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      + +| ..+..+++++++++++|.++.+|. .+..+++|++|++++| .++.+|.+ +..+++|+.|++++|++..+
T Consensus       137 ~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~-~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG-FFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCCCSEEECCSCCBCCS
T ss_pred             ceeccccccccccchhcccccccccccCccccccccccceeecccC-CCcccChh-HCCCCCCCEEEecCCCCCCC
Confidence            7 64 555678899999999999998874 5688999999999999 89999987 78899999999999998654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.2e-15  Score=111.20  Aligned_cols=144  Identities=21%  Similarity=0.354  Sum_probs=124.2

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..++.++.+..+++++.|++++|.++.++....+++|+.|+++ ++.++.++.  +..+++|+.|+++++ .+.
T Consensus        50 ~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~-~n~i~~l~~--l~~l~~L~~L~l~~~-~~~  125 (210)
T d1h6ta2          50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD-ENKVKDLSS--LKDLKKLKSLSLEHN-GIS  125 (210)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCGGG--GTTCTTCCEEECTTS-CCC
T ss_pred             EEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccc-ccccccccc--ccccccccccccccc-ccc
Confidence            4677888888888888899999999999999988877889999999999 888998885  789999999999999 777


Q ss_pred             -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                       ++ .+..++.++.+++++|.++..+ .+..+++|+.+++++| .+..++.  ++.+++|+.|++++|.+. .++
T Consensus       126 ~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~--l~~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         126 DIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-BCG
T ss_pred             ccc-cccccccccccccccccccccc-cccccccccccccccc-ccccccc--ccCCCCCCEEECCCCCCC-CCh
Confidence             65 4778889999999999887654 5678899999999999 7888875  889999999999999874 444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=4.2e-16  Score=112.10  Aligned_cols=119  Identities=26%  Similarity=0.322  Sum_probs=70.9

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccc-cCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIET-LSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW  124 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  124 (210)
                      -+.|.+.+++.+|..- ...+++|++++|.++. ++..  ..+++|+.|+++ ++.+..++...|..+++|+.|++++| 
T Consensus        12 ~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~-~N~i~~~~~~~~~~~~~L~~L~Ls~N-   88 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLGEN-   88 (192)
T ss_dssp             EEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSC-
T ss_pred             EEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeecc-ccccccccccccccccccceeeeccc-
Confidence            4566666777666421 2456666666666653 2222  445666666666 66666555555666666666666666 


Q ss_pred             cee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCC
Q 039257          125 NLK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGT  169 (210)
Q Consensus       125 ~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~  169 (210)
                      .++ + |..|.++++|++|++++|.++.+|. .+..+++|+++++++|
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            666 5 3455666666666666666665543 3455666666666666

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.2e-15  Score=109.83  Aligned_cols=138  Identities=22%  Similarity=0.329  Sum_probs=121.8

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+.+..++.++.+..+++++.|++.+|.++.++....+++|+.|++. ++.+..++.  +..++.++.++++++ .+
T Consensus        71 ~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~-~~~~~~~~~--l~~l~~l~~l~~~~n-~l  146 (210)
T d1h6ta2          71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE-HNGISDING--LVHLPQLESLYLGNN-KI  146 (210)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT-TSCCCCCGG--GGGCTTCCEEECCSS-CC
T ss_pred             CEEeCCCccccCccccccCccccccccccccccccccccccccccccccc-ccccccccc--ccccccccccccccc-cc
Confidence            35677788888888888899999999999999998877889999999999 888877765  788999999999999 88


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeec
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFI  193 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  193 (210)
                      + .+ .+..+++|+++++++|.++.++ .+.++++|+.|++++| .++++|.  +..+++|++|++++
T Consensus       147 ~~~~-~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         147 TDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             CCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEEEEE
T ss_pred             cccc-cccccccccccccccccccccc-cccCCCCCCEEECCCC-CCCCChh--hcCCCCCCEEEccC
Confidence            7 54 4677899999999999999876 4889999999999999 8999985  89999999999964

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.5e-15  Score=101.54  Aligned_cols=101  Identities=22%  Similarity=0.258  Sum_probs=57.8

Q ss_pred             cEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCC
Q 039257           91 VTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGT  169 (210)
Q Consensus        91 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  169 (210)
                      |+|+++ ++.++.++.  +..+..|++|++++| .++ +|+.++.+++|++|++++|.++.+| .++.+++|+.+++++|
T Consensus         1 R~L~Ls-~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLA-HKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECT-TSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcC-CCCCCCCcc--cccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC
Confidence            345555 555555553  455566666666666 666 6555556666666666666666554 3556666666666666


Q ss_pred             CCCCCCCc-ccccCCCCCCeEEeeccccC
Q 039257          170 GQLNKIPR-QLISNFSRLRGLRKFITCAS  197 (210)
Q Consensus       170 ~~~~~lp~-~~~~~l~~L~~L~l~~~~~~  197 (210)
                       .++.+|. ..++.+++|+++++++|++.
T Consensus        76 -~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 -RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             -CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             -ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence             5555542 12455566666666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.6e-16  Score=110.18  Aligned_cols=126  Identities=22%  Similarity=0.274  Sum_probs=103.2

Q ss_pred             CccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-eccc-ccCCCc
Q 039257           61 DVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVG-MSKLGS  137 (210)
Q Consensus        61 ~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~-~~~l~~  137 (210)
                      ......+++.|++++|+++.++.. ..+++|+.|+++ +|.++.++.  +..+++|++|++++| .++ +|.. +..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls-~N~i~~l~~--~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFS-DNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECC-SSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECC-CCCCCccCC--cccCcchhhhhcccc-cccCCCccccccccc
Confidence            334446789999999999988765 668899999999 888998865  788999999999999 899 8654 457899


Q ss_pred             CCEEeccCCcCcccch--hhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEe
Q 039257          138 LQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRK  191 (210)
Q Consensus       138 L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l  191 (210)
                      |++|++++|.++.++.  .+..+++|+++++++| .++..|.   .++..+++|++||.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCC
Confidence            9999999999887763  5678899999999999 7777774   23678899998874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.2e-15  Score=101.91  Aligned_cols=116  Identities=22%  Similarity=0.313  Sum_probs=95.6

Q ss_pred             cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCc
Q 039257           69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNA  147 (210)
Q Consensus        69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~  147 (210)
                      |.|++++|.++.++....+++|+.|+++ +|.++.+|+. +..+++|++|++++| .++ +| .++.+++|++|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls-~N~l~~lp~~-~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECC-CCccCcchhh-hhhhhcccccccccc-cccccC-ccccccccCeEECCCCc
Confidence            5788999999888777888999999999 9999999876 788999999999999 999 87 48889999999999999


Q ss_pred             Ccccc--hhhhcCCCCcEEEccCCCCCCCCC---cccccCCCCCCeE
Q 039257          148 IEELP--EELKLLINLTCLNLRGTGQLNKIP---RQLISNFSRLRGL  189 (210)
Q Consensus       148 l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp---~~~~~~l~~L~~L  189 (210)
                      ++.+|  ..+..+++|+.+++++| .+...+   ......+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            98776  46788999999999998 565443   3333446776655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.1e-14  Score=107.19  Aligned_cols=153  Identities=22%  Similarity=0.292  Sum_probs=121.2

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK  127 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  127 (210)
                      .+.+.+..++.++.+..+++|+.|++++|.+..+.....+++++.+.++ .+.++.++.  +.+++.|+.+.++++ ...
T Consensus        45 ~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~-~n~~~~i~~--l~~l~~L~~l~l~~~-~~~  120 (227)
T d1h6ua2          45 TLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS-GNPLKNVSA--IAGLQSIKTLDLTST-QIT  120 (227)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECC-SCCCSCCGG--GTTCTTCCEEECTTS-CCC
T ss_pred             EEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccc-ccccccccc--ccccccccccccccc-ccc
Confidence            4567788888888888999999999999999887777888899999998 778888775  778888999988877 433


Q ss_pred             -ec---------------------ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCC
Q 039257          128 -FL---------------------VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR  185 (210)
Q Consensus       128 -l~---------------------~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~  185 (210)
                       ++                     ..+..+++|++|++++|.+...+ .++++++|+.|++++| .++.++.  ++.+++
T Consensus       121 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~--l~~l~~  196 (227)
T d1h6ua2         121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISDISP--LASLPN  196 (227)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTT
T ss_pred             ccchhccccchhhhhchhhhhchhhhhccccccccccccccccccch-hhcccccceecccCCC-ccCCChh--hcCCCC
Confidence             21                     12345667899999998877654 4788999999999999 8888876  889999


Q ss_pred             CCeEEeeccccCCCcchhhhhhc
Q 039257          186 LRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       186 L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      |++|++++|++....+-..+.+|
T Consensus       197 L~~L~Ls~N~lt~i~~l~~l~~L  219 (227)
T d1h6ua2         197 LIEVHLKNNQISDVSPLANTSNL  219 (227)
T ss_dssp             CCEEECTTSCCCBCGGGTTCTTC
T ss_pred             CCEEECcCCcCCCCcccccCCCC
Confidence            99999999987543333344443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=3e-14  Score=109.17  Aligned_cols=76  Identities=25%  Similarity=0.367  Sum_probs=57.1

Q ss_pred             ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257           46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ...+.|.+..++.+|.- -.+.+++|++++|.++.++..  ..+++|++|+++ ++.+..+++..|..++.|++|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~-~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccc-cccccccchhhhhCCCccCEecccCC
Confidence            34677888888888752 236788888888888887753  677888888888 77777776655777788888887776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.9e-14  Score=109.29  Aligned_cols=159  Identities=23%  Similarity=0.365  Sum_probs=112.9

Q ss_pred             ccccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCc-------------------
Q 039257           44 EKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELK-------------------  102 (210)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~-------------------  102 (210)
                      ..+..+.|.+.+++.+|.. -.+.+++|++++|.++.++..  ..+++|+.|+++ ++.+.                   
T Consensus        11 ~~~~~v~c~~~~L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls-~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          11 EPKVTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             SSSCEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEcCCCCCCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccc-cccccccccccccccccccccccc
Confidence            3345677888888888752 235788999999988887753  677888888887 44443                   


Q ss_pred             ------ccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCC
Q 039257          103 ------MIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLN  173 (210)
Q Consensus       103 ------~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~  173 (210)
                            .+++..|.++++|++|++++| .+. + +..+....+|+.+++++|.++.+|. .+..+++|+.|++++| .+.
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~  166 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RIS  166 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             cccccccccchhhcccccCCEEecCCc-ccccccccccchhcccchhhhccccccccChhHhccccchhhcccccC-ccc
Confidence                  343444666777888888887 666 5 4556667778888888888777753 4567778888888888 777


Q ss_pred             CCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257          174 KIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN  207 (210)
Q Consensus       174 ~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~  207 (210)
                      .+|...+..+++|+.+++++|.+.+ +++..|.+
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~-i~~~~f~~  199 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRD  199 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTT
T ss_pred             ccchhhhccccccchhhhhhccccc-cChhHhhh
Confidence            7776667788888888888887754 44455554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.2e-14  Score=105.00  Aligned_cols=137  Identities=19%  Similarity=0.268  Sum_probs=116.4

Q ss_pred             CCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccc
Q 039257           54 AGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGM  132 (210)
Q Consensus        54 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~  132 (210)
                      ..+++.+....+.+++.|++.++.++.++....+++|++|+++ ++.++.+++  +.++++|++|++++| .+. ++ .+
T Consensus        28 ~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls-~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~-~l  102 (199)
T d2omxa2          28 TNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNN-QIADIT-PL  102 (199)
T ss_dssp             SSTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GG
T ss_pred             CCCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccc-cccccCccc--ccCCccccccccccc-cccccc-cc
Confidence            3344444445567899999999999988777889999999999 889998886  889999999999999 888 76 47


Q ss_pred             cCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257          133 SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ  199 (210)
Q Consensus       133 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~  199 (210)
                      .+++.|++|+++++.+...+ .+..+++|+.|++++| .+..++.  +..+++|+.|++.+|.+.+.
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccccccccc-ccchhhhhHHhhhhhh-hhccccc--ccccccccccccccccccCC
Confidence            89999999999999877664 5778999999999999 7888875  88999999999999988554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-14  Score=110.37  Aligned_cols=137  Identities=19%  Similarity=0.231  Sum_probs=117.1

Q ss_pred             ccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCc
Q 039257           62 VKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGS  137 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~  137 (210)
                      +..+++++.|++.++.+..++..  ....+|+++++. .+.++.+++..|..+.+|+.|++++| .++ + +..+.++++
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~-~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~  178 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhc-cccccccChhHhccccchhhcccccC-cccccchhhhccccc
Confidence            45667899999999988776544  667889999999 88999998877888999999999999 998 7 577788999


Q ss_pred             CCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          138 LQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       138 L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      |+++++++|.++.+ |..+..+++|++|++++| .+..++...++.+++|+++++++|++..+-+
T Consensus       179 L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cchhhhhhccccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCCCCCCcc
Confidence            99999999988865 678899999999999999 7888887668999999999999998876543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2.9e-14  Score=112.11  Aligned_cols=150  Identities=18%  Similarity=0.271  Sum_probs=98.3

Q ss_pred             EecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e
Q 039257           50 VCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F  128 (210)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l  128 (210)
                      .+.+..++.++.+..++.++.+++.+|.+..++....+++|++++++ ++.+..+++  +..+..++.+.+..+ .++ +
T Consensus       225 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~-~~~l~~~~~--~~~~~~l~~l~~~~n-~l~~~  300 (384)
T d2omza2         225 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG-ANQISNISP--LAGLTALTNLELNEN-QLEDI  300 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC-SSCCCCCGG--GTTCTTCSEEECCSS-CCSCC
T ss_pred             ECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeecc-CcccCCCCc--ccccccccccccccc-ccccc
Confidence            44444455555455555555555555555555444555566666665 555555444  445555555555555 554 4


Q ss_pred             cccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          129 LVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       129 ~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      + .+..+.+++.|++++|+++.++ .+..+++|+.|++++| .++.++.  ++.+++|++|++++|++.+..|-..+.+|
T Consensus       301 ~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~~--l~~l~~L~~L~l~~N~l~~l~~l~~l~~L  375 (384)
T d2omza2         301 S-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVSS--LANLTNINWLSAGHNQISDLTPLANLTRI  375 (384)
T ss_dssp             G-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             c-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCChh--HcCCCCCCEEECCCCcCCCChhhccCCCC
Confidence            3 3566778888899988888775 3778899999999999 7888874  88899999999999988655544444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=3.7e-15  Score=107.07  Aligned_cols=133  Identities=19%  Similarity=0.232  Sum_probs=114.0

Q ss_pred             ccEEEeecccccccCCCCCCCCccEEEcccCCCCcc-cchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEecc
Q 039257           68 VRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKM-IADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDIS  144 (210)
Q Consensus        68 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~  144 (210)
                      .+.++.++++++.+|..- .+++++|+++ ++.++. ++...|.++++|+.|++++| .+. + +..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls-~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI-PLHTTELLLN-DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECC-SCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC-CCCCCEEEeC-CCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeec
Confidence            346888888998888753 2689999999 898974 66666899999999999999 888 5 6788889999999999


Q ss_pred             CCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhh
Q 039257          145 QNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVST  204 (210)
Q Consensus       145 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~  204 (210)
                      +|.++.+|. .+.++++|++|++++| .++.+|...|..+++|+++++++|++....+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             cccccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccccccchHH
Confidence            999998875 5789999999999999 8999998878999999999999999876655433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.1e-15  Score=102.72  Aligned_cols=116  Identities=19%  Similarity=0.204  Sum_probs=98.3

Q ss_pred             ccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhh-
Q 039257           78 IETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEEL-  155 (210)
Q Consensus        78 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~-  155 (210)
                      +...+......+++.|+++ ++.++.++.. +..+++|++|++++| .++ ++ .+..+++|++|++++|.++.+|..+ 
T Consensus         8 i~~~~~~~n~~~lr~L~L~-~n~I~~i~~~-~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_           8 IEQAAQYTNAVRDRELDLR-GYKIPVIENL-GATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             HHTSCEEECTTSCEEEECT-TSCCCSCCCG-GGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             HhhhHhccCcCcCcEEECC-CCCCCccCcc-ccccccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCcccc
Confidence            3334444566789999999 9999999864 678999999999999 999 85 5889999999999999999987654 


Q ss_pred             hcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccCC
Q 039257          156 KLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       156 ~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      ..+++|++|++++| .+..++. ..+..+++|+++++++|++..
T Consensus        84 ~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          84 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccccceeccc-cccccccccccccccccchhhcCCCcccc
Confidence            67999999999999 8888764 337889999999999998843

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=3.7e-14  Score=111.47  Aligned_cols=139  Identities=21%  Similarity=0.255  Sum_probs=123.2

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+.+..+..++.+..+++++.+++.++.+..++....+..++.+... .+.+..++.  +..+++++.|++++| .+
T Consensus       244 ~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~-~n~l~~~~~--~~~~~~l~~L~ls~n-~l  319 (384)
T d2omza2         244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN-ENQLEDISP--ISNLKNLTYLTLYFN-NI  319 (384)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC-SSCCSCCGG--GGGCTTCSEEECCSS-CC
T ss_pred             chhccccCccCCCCcccccccCCEeeccCcccCCCCcccccccccccccc-ccccccccc--cchhcccCeEECCCC-CC
Confidence            35567777888888888889999999999999888777888999999999 888887765  789999999999999 99


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecc
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFIT  194 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~  194 (210)
                      + ++. +..+++|++|++++|.++.+| .+.++++|++|++++| .++.+++  ++++++|+.|++++|
T Consensus       320 ~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         320 SDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEeeCCCC
Confidence            9 763 788999999999999999886 6899999999999999 8899886  899999999999887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.54  E-value=9.3e-14  Score=106.36  Aligned_cols=143  Identities=14%  Similarity=0.221  Sum_probs=120.1

Q ss_pred             ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCC
Q 039257           62 VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQ  139 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~  139 (210)
                      +..+++++.+.+.++.+..++.. .+++++.|++. ++.....++..|.+++.+++|++++| .++ + +..+.++++|+
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l~~~-~~~~L~~L~l~-~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLD-GNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLR  222 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECT-TSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCC
T ss_pred             cccccccCccccccCCccccCcc-cCCccCEEECC-CCcCCCCChhHhhccccccccccccc-cccccccccccccccce
Confidence            34556789999999998877654 36889999999 77777666666899999999999999 999 6 57788899999


Q ss_pred             EEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccc------cCCCCCCeEEeeccccC-CCcchhhhhhc
Q 039257          140 LLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLI------SNFSRLRGLRKFITCAS-SQLKVSTWENL  208 (210)
Q Consensus       140 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~------~~l~~L~~L~l~~~~~~-~~~~~~~f~~l  208 (210)
                      +|++++|.++.+|..+..+++|++|++++| .++.++...+      ..+.+|+.+++++|++. ..+++.+|+-+
T Consensus       223 ~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             EEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             eeecccccccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            999999999999999999999999999999 7888875433      45688999999999984 57788888753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=2.7e-13  Score=99.58  Aligned_cols=138  Identities=20%  Similarity=0.259  Sum_probs=101.2

Q ss_pred             EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEccc---------------------CCCCcccch
Q 039257           48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDF---------------------NGELKMIAD  106 (210)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~---------------------~~~~~~~~~  106 (210)
                      .+.+.+..++.++.+..+++++.+.+.++.++.++....++.|+.+.+++                     ++.+.....
T Consensus        67 ~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  146 (227)
T d1h6ua2          67 GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP  146 (227)
T ss_dssp             EEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             EeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhhchhhh
Confidence            34455555655555666666666666666665555445555555555552                     333333222


Q ss_pred             hHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCC
Q 039257          107 GFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSR  185 (210)
Q Consensus       107 ~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~  185 (210)
                        +..+++|+.|++++| .+. .+ .++++++|+.|++++|.++.+|. +.++++|++|++++| .++.+++  ++++++
T Consensus       147 --~~~~~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~--l~~l~~  218 (227)
T d1h6ua2         147 --LAGLTNLQYLSIGNA-QVSDLT-PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN-QISDVSP--LANTSN  218 (227)
T ss_dssp             --GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCGG--GTTCTT
T ss_pred             --hcccccccccccccc-ccccch-hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCC-cCCCCcc--cccCCC
Confidence              567888999999999 877 54 37889999999999999998864 789999999999999 8999986  899999


Q ss_pred             CCeEEeec
Q 039257          186 LRGLRKFI  193 (210)
Q Consensus       186 L~~L~l~~  193 (210)
                      |+.|++++
T Consensus       219 L~~L~lsn  226 (227)
T d1h6ua2         219 LFIVTLTN  226 (227)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEeeC
Confidence            99999963

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.50  E-value=3.5e-14  Score=109.18  Aligned_cols=138  Identities=17%  Similarity=0.267  Sum_probs=91.3

Q ss_pred             CccCCCCccEEEeec-cccc-ccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--ecccccCC
Q 039257           61 DVKEWENVRRLSLMQ-NQIE-TLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKL  135 (210)
Q Consensus        61 ~~~~~~~l~~L~l~~-~~~~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l  135 (210)
                      .+..+++|++|++++ |.+. .+|.. ..+++|++|+++ .+.+..+++..+..+..|+++++++| .+.  +|..++++
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls-~N~l~~~~~~~~~~~~~L~~l~l~~N-~~~~~~p~~l~~l  148 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL  148 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGC
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhc-cccccccccccccchhhhcccccccc-cccccCchhhccC
Confidence            466777888888876 5665 46654 677888888888 66665544444555566666666655 444  45555555


Q ss_pred             CcCCEEeccCCcCc-ccc--------------------------------------------------------------
Q 039257          136 GSLQLLDISQNAIE-ELP--------------------------------------------------------------  152 (210)
Q Consensus       136 ~~L~~L~l~~~~l~-~lp--------------------------------------------------------------  152 (210)
                      +.++++++++|.+. .+|                                                              
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             cccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55555555544433 222                                                              


Q ss_pred             ---------hhhhcCCCCcEEEccCCCCCC-CCCcccccCCCCCCeEEeeccccCCCcch
Q 039257          153 ---------EELKLLINLTCLNLRGTGQLN-KIPRQLISNFSRLRGLRKFITCASSQLKV  202 (210)
Q Consensus       153 ---------~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~  202 (210)
                               ..++.+++|+.|++++| .++ .+|.. ++++++|++|++++|.+.+.+|.
T Consensus       229 ~~~~l~~~~~~~~~~~~L~~L~Ls~N-~l~g~iP~~-l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         229 AKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CSSEECCBGGGCCCCTTCCEEECCSS-CCEECCCGG-GGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccccccccccccccccccCccC-eecccCChH-HhCCCCCCEEECcCCcccccCCC
Confidence                     13455677888888888 554 78876 88889999999999988877774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.1e-13  Score=98.33  Aligned_cols=158  Identities=20%  Similarity=0.229  Sum_probs=100.3

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCc
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNC  123 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~  123 (210)
                      ..+.|.+.+++.+|.- -+..+++|++++|.++.++..  .++++|++|+++ ++.+. .++...|.+++.++.+.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls-~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSC-SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEE-SCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCC-CCCCCCEEECcCCcCCccChhHhhccchhhhhhhc-cccccceeecccccccccccccccccc
Confidence            4677888888888742 235788888888888877664  678888888888 55443 344444555666665554432


Q ss_pred             ccee-e-cccccCCCcCCEEeccCCcCc--------------------------------------------------cc
Q 039257          124 WNLK-F-LVGMSKLGSLQLLDISQNAIE--------------------------------------------------EL  151 (210)
Q Consensus       124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~--------------------------------------------------~l  151 (210)
                      ..+. + +..+.++++|+++++++|.+.                                                  .+
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence            1333 2 344455555555555554443                                                  33


Q ss_pred             chhhhcCCCCcEEE-ccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257          152 PEELKLLINLTCLN-LRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL  208 (210)
Q Consensus       152 p~~~~~l~~L~~L~-l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l  208 (210)
                      +....+..++..+. +.+| .++.+|...+.++++|+.|++++|.+ ..+|...|.++
T Consensus       169 ~~~~~~~~~l~~~~~l~~n-~l~~l~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~~~l  224 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNN-NLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENL  224 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCT-TCCCCCTTTTTTSCCCSEEECTTSCC-CCCCSSSCTTC
T ss_pred             ccccccchhhhcccccccc-ccccccHHHhcCCCCCCEEECCCCcC-CccCHHHHcCC
Confidence            33333344444444 3444 77888877688999999999999997 46777777765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.39  E-value=9e-13  Score=101.14  Aligned_cols=133  Identities=21%  Similarity=0.276  Sum_probs=110.2

Q ss_pred             CCccEEEeecccccc---cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcC
Q 039257           66 ENVRRLSLMQNQIET---LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSL  138 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~---l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L  138 (210)
                      .+++.|++.++.+.+   +|.. ..+++|++|++++++.+. .+|.. +.++++|++|++++| .+. + +..+..+..|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhccc-cccccccccccchhhh
Confidence            368899999998874   5554 789999999998546665 78887 899999999999999 888 5 6778889999


Q ss_pred             CEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCC-CeEEeeccccCCCcc
Q 039257          139 QLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL-RGLRKFITCASSQLK  201 (210)
Q Consensus       139 ~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L-~~L~l~~~~~~~~~~  201 (210)
                      +++++++|.+. .+|..+++++.++.+++++|.....+|.. +..+..+ +.+++++|.+.+..+
T Consensus       128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccccccc
Confidence            99999999765 77899999999999999999444578876 7777775 889998888866544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8e-12  Score=86.34  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=70.2

Q ss_pred             EEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCC
Q 039257           70 RLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQN  146 (210)
Q Consensus        70 ~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~  146 (210)
                      .+...+++...++.. ..+++|+.|++.+++.++.++...|.++++|+.|++++| .++ + +..+..+++|++|++++|
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCC
Confidence            355555555544444 556777788886345677777766777888888888888 777 6 466777888888888888


Q ss_pred             cCcccchhhhcCCCCcEEEccCC
Q 039257          147 AIEELPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       147 ~l~~lp~~~~~l~~L~~L~l~~~  169 (210)
                      .++.+|..+....+|+.|++++|
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCcccChhhhccccccccccCCC
Confidence            88877766655557788888877

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-11  Score=85.02  Aligned_cols=107  Identities=16%  Similarity=0.077  Sum_probs=89.0

Q ss_pred             CCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEE
Q 039257           88 PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCL  164 (210)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L  164 (210)
                      .....+... .+.+..+|.. +.++++++.|.+.++..++ ++ ..|.++++|+.|++++|.++.++ ..+..+++|++|
T Consensus         8 ~~~~~l~c~-~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           8 HGSSGLRCT-RDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSSCEECC-SSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCCeEEec-CCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            334567777 6777777776 7889999999998763588 75 67899999999999999999885 557899999999


Q ss_pred             EccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257          165 NLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       165 ~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      ++++| .++.+|...+ ...+|+.|++++|++..
T Consensus        86 ~Ls~N-~l~~l~~~~~-~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          86 NLSFN-ALESLSWKTV-QGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             ECCSS-CCSCCCSTTT-CSCCCCEEECCSSCCCC
T ss_pred             eccCC-CCcccChhhh-ccccccccccCCCcccC
Confidence            99999 8999998744 45579999999999854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=2.5e-14  Score=103.16  Aligned_cols=103  Identities=26%  Similarity=0.317  Sum_probs=64.8

Q ss_pred             cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEE
Q 039257           63 KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLL  141 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L  141 (210)
                      ..+++++.|++++|.++.++....+++|+.|+++ +|.++.++.. +..++.|++|++++| .++ ++ .+..+++|++|
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls-~N~i~~i~~~-~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCCCHHHHTTCCEEECC-EEEECSCSSH-HHHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEE
T ss_pred             hcccccceeECcccCCCCcccccCCccccChhhc-cccccccccc-ccccccccccccccc-cccccc-ccccccccccc
Confidence            3455666777777776666544556667777776 6666666543 334456677777776 666 53 35566667777


Q ss_pred             eccCCcCcccc--hhhhcCCCCcEEEccCC
Q 039257          142 DISQNAIEELP--EELKLLINLTCLNLRGT  169 (210)
Q Consensus       142 ~l~~~~l~~lp--~~~~~l~~L~~L~l~~~  169 (210)
                      ++++|.++.++  ..+..+++|+.|++++|
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccchhccccccccccCCCccceeecCCC
Confidence            77777666554  24566667777777666

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=1.4e-14  Score=104.55  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=93.7

Q ss_pred             CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcE
Q 039257           85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC  163 (210)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~  163 (210)
                      ..+++|+.|+++ ++.++.++.  +..+++|++|++++| .++ +|.....++.|++|++++|.++.++ .+..+++|+.
T Consensus        45 ~~L~~L~~L~Ls-~n~I~~i~~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~  119 (198)
T d1m9la_          45 STLKACKHLALS-TNNIEKISS--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHTTTCCEEECS-EEEESCCCC--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSE
T ss_pred             hcccccceeECc-ccCCCCccc--ccCCccccChhhccc-ccccccccccccccccccccccccccccc-cccccccccc
Confidence            668899999999 888999875  789999999999999 999 8866666678999999999999874 5788999999


Q ss_pred             EEccCCCCCCCCCc-ccccCCCCCCeEEeeccccCC
Q 039257          164 LNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCASS  198 (210)
Q Consensus       164 L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~  198 (210)
                      |++++| .++.++. ..+..+++|+.|++++|++..
T Consensus       120 L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         120 LYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccc-hhccccccccccCCCccceeecCCCcccc
Confidence            999999 7888763 237899999999999998744

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.2e-10  Score=83.34  Aligned_cols=129  Identities=18%  Similarity=0.238  Sum_probs=95.2

Q ss_pred             ccCCCCccEEEeecccccccCCCC---CCCCccEEEcccCCCCcccchhHhcCCC-CCcEEecCCcccee-ecccccCCC
Q 039257           62 VKEWENVRRLSLMQNQIETLSEVP---TCPHFVTLFLDFNGELKMIADGFFQLMP-SLKVLKMSNCWNLK-FLVGMSKLG  136 (210)
Q Consensus        62 ~~~~~~l~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~-l~~~~~~l~  136 (210)
                      +..+++++.+.+.++.+...+...   .+..+..+... ++.+..++...|.+++ .++.+++.++ .++ ++.......
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~-n~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~~~~~~  176 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-NINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNCAFNGT  176 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEES-CTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTTTTTC
T ss_pred             ccccccccccccchhhhccccccccccccccccccccc-ccccccccccccccccccceeeecccc-cccccccccccch
Confidence            355678888888888877655543   33445455555 6677777765566654 6888999999 999 876666666


Q ss_pred             cCCEE-eccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeec
Q 039257          137 SLQLL-DISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFI  193 (210)
Q Consensus       137 ~L~~L-~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~  193 (210)
                      +++.+ .+.+|.++++|.. +.++++|+.|++++| .++.+|...+.++++|+.+++.+
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSEES
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcCCC
Confidence            66555 5677789999864 688999999999999 79999887678888888777644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.4e-10  Score=83.28  Aligned_cols=62  Identities=19%  Similarity=0.179  Sum_probs=32.1

Q ss_pred             cCCCcCCEEeccCC-cCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecc
Q 039257          133 SKLGSLQLLDISQN-AIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFIT  194 (210)
Q Consensus       133 ~~l~~L~~L~l~~~-~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~  194 (210)
                      .++++|++|++++| .++ .....+.++++|++|++++|..+++-....++++++|+.|+++++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            34556666666654 343 233445556666666666654443322112455566666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.88  E-value=6.6e-08  Score=73.96  Aligned_cols=133  Identities=23%  Similarity=0.370  Sum_probs=95.5

Q ss_pred             cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257           47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL  126 (210)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  126 (210)
                      ..+.+.+.+++.+|+.  .++++.|++++|+++.+|..  ..+|+.|++. ++.++.++.  +  .+.|++|++++| .+
T Consensus        41 ~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~-~n~l~~l~~--l--p~~L~~L~L~~n-~l  110 (353)
T d1jl5a_          41 HELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVD-NNNLKALSD--L--PPLLEYLGVSNN-QL  110 (353)
T ss_dssp             SEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECC-SSCCSCCCS--C--CTTCCEEECCSS-CC
T ss_pred             CEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhh-hcccchhhh--h--cccccccccccc-cc
Confidence            3567788888888853  46899999999999888754  4688999998 787877664  1  246899999999 88


Q ss_pred             e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      . +|. ++.+.+|++|+++++.+...|..   ...+..+.+..+ .......  +..++.++.+++.+|..
T Consensus       111 ~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~-~~~~~~~--l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         111 EKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCC
T ss_pred             ccccc-hhhhccceeeccccccccccccc---cccccchhhccc-ccccccc--ccccccceecccccccc
Confidence            8 875 57788999999998887766543   344555666555 3333322  56677777777766654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.87  E-value=1.8e-08  Score=77.21  Aligned_cols=114  Identities=26%  Similarity=0.287  Sum_probs=90.1

Q ss_pred             CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257           66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS  144 (210)
Q Consensus        66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~  144 (210)
                      .++++|++++++++.+|..  .++|++|+++ ++.++.+|..    +.+|+.|++++| .++ ++..   .+.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls-~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVAS-CNSLTELPEL----PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECC-SSCCSSCCCC----CTTCCEEECCSS-CCSCCCSC---CTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECC-CCCCcccccc----hhhhhhhhhhhc-ccchhhhh---cccccccccc
Confidence            3688999999999988864  5789999999 8999998863    568999999999 888 7632   2469999999


Q ss_pred             CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257          145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      +|.++.+|. ++.+++|+++++++| .+...+..    ...+..+.+..+..
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~----~~~l~~l~~~~~~~  152 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNNQL  152 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCC
T ss_pred             ccccccccc-hhhhccceeeccccc-cccccccc----cccccchhhccccc
Confidence            999999985 578999999999998 66666652    35566666655544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.8e-09  Score=79.04  Aligned_cols=139  Identities=17%  Similarity=0.188  Sum_probs=93.0

Q ss_pred             cCCCCccEEEeecccccc--cCCCCCCCCccEEEcccCCCCcccc-hhHhcCCCCCcEEecCCcccee---ecccccC-C
Q 039257           63 KEWENVRRLSLMQNQIET--LSEVPTCPHFVTLFLDFNGELKMIA-DGFFQLMPSLKVLKMSNCWNLK---FLVGMSK-L  135 (210)
Q Consensus        63 ~~~~~l~~L~l~~~~~~~--l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~---l~~~~~~-l  135 (210)
                      ..++++++|.+.++.+..  +.....+++|+.|+++++..+++.. ......+++|++|+++++..++   +...+.. .
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence            345688999999887653  2222567889999998556666422 1224578899999999874554   3333333 4


Q ss_pred             CcCCEEeccCC--cCc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          136 GSLQLLDISQN--AIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       136 ~~L~~L~l~~~--~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      +.|+.|+++++  .++  .+..-..++++|++|++++|..+++-....+.++++|++|++++|...++..
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH
Confidence            68999999875  233  2333346788999999998866664332337888999999998876544433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.5e-08  Score=67.95  Aligned_cols=80  Identities=26%  Similarity=0.297  Sum_probs=57.6

Q ss_pred             hcCCCCCcEEecCCcccee-ec---ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCc------
Q 039257          109 FQLMPSLKVLKMSNCWNLK-FL---VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPR------  177 (210)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~-l~---~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~------  177 (210)
                      +..++.|++|++++| .++ ++   ..+..+++|+.|++++|.++.++. ......+|+.+++.+| .+.....      
T Consensus        61 ~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~~~~~y~  138 (162)
T d1koha1          61 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN-SLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSSSHHHHH
T ss_pred             HHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC-CcCcCcccchhHH
Confidence            567888999999999 888 53   445678889999999998887764 2233456888899988 4543321      


Q ss_pred             -ccccCCCCCCeEE
Q 039257          178 -QLISNFSRLRGLR  190 (210)
Q Consensus       178 -~~~~~l~~L~~L~  190 (210)
                       .++..+++|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             2356788888886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.2e-07  Score=73.30  Aligned_cols=101  Identities=20%  Similarity=0.319  Sum_probs=50.7

Q ss_pred             CccEEEeecccccccC--C-CCCCCCccEEEcccCCCCcccc----hhHhcCCCCCcEEecCCcccee-e-----ccccc
Q 039257           67 NVRRLSLMQNQIETLS--E-VPTCPHFVTLFLDFNGELKMIA----DGFFQLMPSLKVLKMSNCWNLK-F-----LVGMS  133 (210)
Q Consensus        67 ~l~~L~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~-l-----~~~~~  133 (210)
                      +++.|+++++++....  . ...++++++|++. ++.++...    ...+..+++|+.|++++| .++ .     .+.+.
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~-~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeC-CCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence            4566666666665411  1 1345566666666 55554211    111345666666666666 553 1     12221


Q ss_pred             C-CCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCC
Q 039257          134 K-LGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGT  169 (210)
Q Consensus       134 ~-l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~  169 (210)
                      . ..+|+.|++++|.++.     ++..+..+++|++|++++|
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            1 2346666666665542     2233445566666666666

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.7e-07  Score=64.42  Aligned_cols=73  Identities=21%  Similarity=0.140  Sum_probs=57.8

Q ss_pred             ecccccCCCcCCEEeccCCcCcccc---hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257          128 FLVGMSKLGSLQLLDISQNAIEELP---EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK  201 (210)
Q Consensus       128 l~~~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~  201 (210)
                      ++.....+++|++|++++|.++.++   ..+..+++|+.|++++| .+++++.-.......|+.+++++|++.....
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            4444457889999999999998664   45678999999999999 8998876223455679999999999976543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.03  E-value=2.1e-06  Score=65.75  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             CCCccEEEcccCCCCccc-----chhHhcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCccc----
Q 039257           87 CPHFVTLFLDFNGELKMI-----ADGFFQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEEL----  151 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~l----  151 (210)
                      ...++.|+++ .+.+..-     ....+..+++|+.|++++| .++      +...+...++|++|++++|.++.-    
T Consensus       185 ~~~L~~L~L~-~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         185 HRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             CTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhcccccc-cccccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3455666665 4444321     0111344556666666666 543      223445556666666666655421    


Q ss_pred             -chhhhc--CCCCcEEEccCCCCCCC-----CCcccc-cCCCCCCeEEeeccccC
Q 039257          152 -PEELKL--LINLTCLNLRGTGQLNK-----IPRQLI-SNFSRLRGLRKFITCAS  197 (210)
Q Consensus       152 -p~~~~~--l~~L~~L~l~~~~~~~~-----lp~~~~-~~l~~L~~L~l~~~~~~  197 (210)
                       -..+..  -+.|++|++++| .++.     +... + .+.++|++|++++|.+.
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~-l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTV-IDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHH-HHHHCTTCCEEECTTSBSC
T ss_pred             HHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHH-HHccCCCCCEEECCCCcCC
Confidence             112222  234666666666 3432     1111 2 24556666777666663

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.99  E-value=2.3e-06  Score=65.55  Aligned_cols=108  Identities=23%  Similarity=0.244  Sum_probs=70.4

Q ss_pred             CCCCccEEEcccCCCCcccch----hHhcCCCCCcEEecCCcccee-------ecccccCCCcCCEEeccCCcCcc----
Q 039257           86 TCPHFVTLFLDFNGELKMIAD----GFFQLMPSLKVLKMSNCWNLK-------FLVGMSKLGSLQLLDISQNAIEE----  150 (210)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~l~~----  150 (210)
                      ..+.|+.+.++ .+.+..-..    ..+...+.++.+++++| .++       +...+...++|+.|++++|.++.    
T Consensus       156 ~~~~L~~l~l~-~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  233 (344)
T d2ca6a1         156 NAPPLRSIICG-RNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  233 (344)
T ss_dssp             TCCCCCEEECC-SSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             cCcccceeecc-cccccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccc
Confidence            34566777776 555542211    11456778888888888 765       12445667888999998887752    


Q ss_pred             -cchhhhcCCCCcEEEccCCCCCCCCCccc----cc--CCCCCCeEEeecccc
Q 039257          151 -LPEELKLLINLTCLNLRGTGQLNKIPRQL----IS--NFSRLRGLRKFITCA  196 (210)
Q Consensus       151 -lp~~~~~l~~L~~L~l~~~~~~~~lp~~~----~~--~l~~L~~L~l~~~~~  196 (210)
                       +...+...++|+.|++++| .++......    +.  ..+.|++|++++|.+
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             cccccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence             3345677888999999888 565432111    22  236788999988876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.8e-06  Score=66.77  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=8.4

Q ss_pred             ccCCCcCCEEeccCCcCc
Q 039257          132 MSKLGSLQLLDISQNAIE  149 (210)
Q Consensus       132 ~~~l~~L~~L~l~~~~l~  149 (210)
                      +..+++|++|++++|.+.
T Consensus       108 l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         108 LRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTSCTTCCEEECCSSBCH
T ss_pred             hhccccccccccccccch
Confidence            344444555555544443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=0.00014  Score=49.58  Aligned_cols=106  Identities=8%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             CCCccEEEcccCCCCcc-----cchhHhcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----
Q 039257           87 CPHFVTLFLDFNGELKM-----IADGFFQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----  150 (210)
Q Consensus        87 ~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----  150 (210)
                      .+.|+.|++++.+.++.     +-.. +...+.|+.|++++| .++      +.+.+...+.|++|++++|.+..     
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~-L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHH-HhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45677777762233432     1111 456677888888887 665      12344455678888888887662     


Q ss_pred             cchhhhcCCCCcEEEccCCCCCCCCCc-------ccccCCCCCCeEEeeccc
Q 039257          151 LPEELKLLINLTCLNLRGTGQLNKIPR-------QLISNFSRLRGLRKFITC  195 (210)
Q Consensus       151 lp~~~~~l~~L~~L~l~~~~~~~~lp~-------~~~~~l~~L~~L~l~~~~  195 (210)
                      +-..+..-+.|++|++++| ....+..       .++..-++|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n-~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCC-cCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            2234455567888888777 4444332       113345678888876554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.95  E-value=0.00082  Score=45.53  Aligned_cols=86  Identities=13%  Similarity=0.097  Sum_probs=62.4

Q ss_pred             cCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCc-
Q 039257          110 QLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPR-  177 (210)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~-  177 (210)
                      .+.+.|+.|+++++..++      +-..+.....|++|++++|.+..     +...+...+.|+.|++++| .++.-.. 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHH
Confidence            456899999999752454      22456677889999999998762     2234556688999999999 6654211 


Q ss_pred             ---ccccCCCCCCeEEeecccc
Q 039257          178 ---QLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       178 ---~~~~~l~~L~~L~l~~~~~  196 (210)
                         .++..-++|++|++++|..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHHHhCCcCCEEECCCCcC
Confidence               1256678899999988765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.48  E-value=0.0021  Score=43.21  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=64.0

Q ss_pred             CCCCccEEEcccCCCCcccc----hhHhcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCc-----c
Q 039257           86 TCPHFVTLFLDFNGELKMIA----DGFFQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIE-----E  150 (210)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~-----~  150 (210)
                      ..+.|+.|++++.+.++.-.    ...+...++|+.|++++| .++      +.+.+.....++.+++++|.+.     .
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            34667777776224443211    111456778888888888 765      2244555677888888887765     2


Q ss_pred             cchhhhcCCCCcEEEccCCC-CCCC-----CCcccccCCCCCCeEEeecccc
Q 039257          151 LPEELKLLINLTCLNLRGTG-QLNK-----IPRQLISNFSRLRGLRKFITCA  196 (210)
Q Consensus       151 lp~~~~~l~~L~~L~l~~~~-~~~~-----lp~~~~~~l~~L~~L~l~~~~~  196 (210)
                      +-..+...++|+.+++..+. .++.     +.. ++...++|++|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCCCC
Confidence            22455666778776665431 3322     222 245677888888866654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.23  E-value=0.015  Score=38.76  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=59.7

Q ss_pred             hcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257          109 FQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPR  177 (210)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~  177 (210)
                      ..+.+.|+.|+++++..++      +...+...++|+.|++++|.++.     +-..+...+.++.+++++| .++.-..
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~   91 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI   91 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhH
Confidence            4567899999999842565      23556678899999999998762     2234567789999999998 5543211


Q ss_pred             ----ccccCCCCCCeEEeec
Q 039257          178 ----QLISNFSRLRGLRKFI  193 (210)
Q Consensus       178 ----~~~~~l~~L~~L~l~~  193 (210)
                          ..+...++|+.+++..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHHHhCccccEEeecc
Confidence                1256778899877753