Citrus Sinensis ID: 039265
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 708 | 2.2.26 [Sep-21-2011] | |||||||
| O64495 | 775 | Subtilisin-like protease | yes | no | 0.983 | 0.898 | 0.463 | 1e-171 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.975 | 0.912 | 0.446 | 1e-161 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.929 | 0.900 | 0.403 | 1e-131 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.913 | 0.863 | 0.418 | 1e-129 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.617 | 0.542 | 0.291 | 7e-32 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.631 | 0.378 | 0.254 | 3e-18 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.625 | 0.374 | 0.242 | 4e-18 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.632 | 0.383 | 0.247 | 4e-18 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.699 | 0.430 | 0.242 | 4e-18 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.699 | 0.423 | 0.246 | 7e-18 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 603 bits (1556), Expect = e-171, Method: Compositional matrix adjust.
Identities = 351/757 (46%), Positives = 461/757 (60%), Gaps = 61/757 (8%)
Query: 4 QTYIVSVQ-QPEGSDLAESEYVENWHRSFLPYSL-----ESSDVQQRPFYSYKNVISGFA 57
QTYIV + E + S++ +WH SFL ++ E + R YSY + I GFA
Sbjct: 26 QTYIVQLHPNSETAKTFASKF--DWHLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFA 83
Query: 58 AKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQ--GMGVWKESNFGKGVIIG 115
A+LTE E + ++ V+ RP+ +++QTT+S FLGL GVW +S FG+G IIG
Sbjct: 84 AQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIG 143
Query: 116 ILDGGINPDHPSFSDEGMPPPPAKWKGRCD------FSTCNNKLIGARTFNIEGNVKGTE 169
+LD G+ P+ PSF D GMP P KWKG C S+CN KLIGAR F I G+
Sbjct: 144 VLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFF-IRGHRVANS 202
Query: 170 PP------------IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKV 217
P D GHGTH A T G+ V A LGN G A GMAP AH+A+YKV
Sbjct: 203 PEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKV 262
Query: 218 C-FGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVS 276
C F G C SD+LA +D AI+D VDVLS+S+GG +P ++D+IA+G+F A+++GI V
Sbjct: 263 CWFNG---CYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTFRAMERGISVI 319
Query: 277 CAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQT-- 334
CAAGN+GP S+++N APW+ T+GA TLDR A +L N + GES++ K
Sbjct: 320 CAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGKGIKNAGR 379
Query: 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMIL 394
+ ++Y G S FC GSL +++GK+V+C+RG R KGE VK AGG AMIL
Sbjct: 380 EVEVIYV-TGGDKGSEFCLRGSLPREEIRGKMVICDRGVN-GRSEKGEAVKEAGGVAMIL 437
Query: 395 MNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVV 454
N E N D H+LPAT + + +K+Y+N+T P A IIF GTVIG S AP V
Sbjct: 438 ANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVA 497
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAW---FEPLDFNTNPKSI-FNIMSGTSMACPH 510
FS+RGP+LA+P ILKPD+I PG++I+AAW P + + + F +MSGTSM+CPH
Sbjct: 498 QFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPH 557
Query: 511 LSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSR 570
+SGI AL++S++P WSPAAIKSALMTTADL + G+ I D +PA +FAIGAGHVNP +
Sbjct: 558 VSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAIKDGN-KPAGVFAIGAGHVNPQK 616
Query: 571 ANDPGLVYDIQPDDYIPYLCGLGYSDKEV-----------GILVHRPVAQLNYPSFSVTL 619
A +PGLVY+IQP DYI YLC LG++ ++ GIL P LNYPS +V
Sbjct: 617 AINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIF 676
Query: 620 GPAQT---FTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFT-- 674
+T TR VTNVG S Y+VNV AP+G+ V V P +L F V+Q +Y V F
Sbjct: 677 KRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLK 736
Query: 675 RSGSGYTSGQFAQGYITWVSAK---YSVRSPISVRLQ 708
+ G FAQG +TWV++ VRSPISV L+
Sbjct: 737 KKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISVTLK 773
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 567 bits (1462), Expect = e-161, Method: Compositional matrix adjust.
Identities = 331/742 (44%), Positives = 454/742 (61%), Gaps = 51/742 (6%)
Query: 1 SNLQTYIVSV---QQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFA 57
S+ TYIV + Q P DL NW+ S SL S Y+Y+N I GF+
Sbjct: 27 SDQGTYIVHMAKSQMPSSFDLHS-----NWYDS----SLRSISDSAELLYTYENAIHGFS 77
Query: 58 AKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMG-VWKESNFGKGVIIGI 116
+LT+EE + + G +S PE + L TT +P FLGL + ++ E+ V++G+
Sbjct: 78 TRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGV 137
Query: 117 LDGGINPDHPSFSDEGMPPPPAKWKGRCDFST------CNNKLIGARTF--NIEGNV--- 165
LD G+ P+ S+SDEG P P+ WKG C+ T CN KLIGAR F E +
Sbjct: 138 LDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPI 197
Query: 166 ---KGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGD 222
K + P D DGHGTH + TAAG+ V+ A LG A GTA GMAP A +A+YKVC+ G
Sbjct: 198 DESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGG 257
Query: 223 VDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNS 282
C SD+LA +D AI D V+VLS+S+GGG ++ D +A+G+FAA+++GI VSC+AGN+
Sbjct: 258 --CFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNA 315
Query: 283 GPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAG 342
GP +S++SN APWI TVGA TLDR A A LGN + F G S+F+ + P LP +YAG
Sbjct: 316 GPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAG 375
Query: 343 -MNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA 401
+ C G+L VKGK+V+C+RG AR+ KG+ VK AGG MIL N N
Sbjct: 376 NASNATNGNLCMTGTLIPEKVKGKIVMCDRGIN-ARVQKGDVVKAAGGVGMILANTAANG 434
Query: 402 FSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGP 461
++AD H+LPAT V AG I+ Y+ + P A+I GTV+G +P V +FSSRGP
Sbjct: 435 EELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGP 494
Query: 462 NLASPGILKPDIIGPGLSILAAWF---EPLDFNTNPKSI-FNIMSGTSMACPHLSGIAAL 517
N +P ILKPD+I PG++ILAAW P ++ + + FNI+SGTSM+CPH+SG+AAL
Sbjct: 495 NSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAAL 554
Query: 518 LKSSHPYWSPAAIKSALMTTADLLNMNGERIVD-ETLRPADIFAIGAGHVNPSRANDPGL 576
LKS HP WSPAAI+SALMTTA +G+ ++D T +P+ F GAGHV+P+ A +PGL
Sbjct: 555 LKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGL 614
Query: 577 VYDIQPDDYIPYLCGLGYSDKEVGILVHR----------PVAQLNYPSFSVTLG--PAQT 624
+YD+ +DY+ +LC L Y+ ++ + R VA LNYPSF+V + A
Sbjct: 615 IYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYK 674
Query: 625 FTRTVTNVGQVYSSYAVNVVAP-QGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSG 683
+TRTVT+VG +Y+V V + GV +SV+P+ L F + N+K +Y+VTFT S SG
Sbjct: 675 YTRTVTSVGGA-GTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVD-SSKPSG 732
Query: 684 QFAQGYITWVSAKYSVRSPISV 705
+ G I W K+ V SP+++
Sbjct: 733 SNSFGSIEWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust.
Identities = 291/722 (40%), Positives = 408/722 (56%), Gaps = 64/722 (8%)
Query: 15 GSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGF 74
G L + + HR+ L + S+ + ++YK +GFA KLTEEE + + G
Sbjct: 39 GRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEKIASMEGV 98
Query: 75 VSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMP 134
VS L TT S FLG + V + S +++G+LD GI P+ PSF DEG
Sbjct: 99 VSVFLNEMNELHTTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFS 156
Query: 135 PPPAKWKGRCDFST---CNNKLIGARTFNI-----EGNVKGTEPPIDVDGHGTHVAGTAA 186
PPP KWKG C+ S CN K+IGAR+++I G+V G P D +GHGTH A TAA
Sbjct: 157 PPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPISPGDVNG---PRDTNGHGTHTASTAA 213
Query: 187 GAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLS 246
G V A G GTA G P A +A YKVC+ + C+++D+LA D AI DGVD++S
Sbjct: 214 GGLVSQANLYGLGLGTARGGVPLARIAAYKVCW--NDGCSDTDILAAYDDAIADGVDIIS 271
Query: 247 ISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLD 305
+S+GG + +F D+IA+GSF A+++GI S +AGN GP T ++ +PW+L+V AST+D
Sbjct: 272 LSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 331
Query: 306 RSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMN------GKPESAFCGNGSLSG 359
R V ++GN + F G S+ F PLV +G + K S FC + S++
Sbjct: 332 RKFVTQVQIGNGQSFQGVSI---NTFDNQYYPLV-SGRDIPNTGFDKSTSRFCTDKSVNP 387
Query: 360 IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSND 419
+KGK+V+CE G F K+ GAA +LM + AD + LP++ + +
Sbjct: 388 NLLKGKIVVCEASFGPHEFF-----KSLDGAAGVLMTSNTRDY---ADSYPLPSSVLDPN 439
Query: 420 AGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLS 479
L YI S +P AT IFK T I N+ AP VVSFSSRGPN A+ ++KPDI GPG+
Sbjct: 440 DLLATLRYIYSIRSPGAT-IFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVE 498
Query: 480 ILAAW--FEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTT 537
ILAAW P+ ++FNI+SGTSM+CPH++GIA +K+ +P WSPAAIKSALMTT
Sbjct: 499 ILAAWPSVAPVG-GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTT 557
Query: 538 ADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK 597
A +N P FA G+GHVNP +A PGLVYD DY+ +LCG GY+ +
Sbjct: 558 ASPMNAR--------FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQ 609
Query: 598 EVGILVHR----------PVAQLNYPSFSVTLGPAQT----FTRTVTNVGQVYSSYAVNV 643
V + V LNYPSF +++ P+QT F RT+T+V S+Y +
Sbjct: 610 AVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMI 669
Query: 644 VAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPI 703
APQG+ +SV P+ L F+ + + ++++T S G+ + W + VRSPI
Sbjct: 670 SAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFV----VSASLVWSDGVHYVRSPI 725
Query: 704 SV 705
++
Sbjct: 726 TI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 294/702 (41%), Positives = 399/702 (56%), Gaps = 55/702 (7%)
Query: 36 LESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLG 95
+ + ++R YSY + FAAKL+ E + M + VS + +L TT S F+G
Sbjct: 65 ISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVG 124
Query: 96 LHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRC----DFSTCNN 151
L + + + VIIG+LD GI PD SF D G+ PPPAKWKG C +F+ CNN
Sbjct: 125 LP--LTAKRHLKAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNFTGCNN 182
Query: 152 KLIGARTFNIEGNVKGTE--PPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPY 209
K+IGA+ F +GNV E PID+DGHGTH + T AG V NA G A GTA G P
Sbjct: 183 KIIGAKYFKHDGNVPAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPS 242
Query: 210 AHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269
A LA+YKVC+ C + D+LAG +AAI DGV+++SISIGG + +DSI+VGSF A+
Sbjct: 243 ARLAMYKVCWARS-GCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAM 301
Query: 270 QKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGE--SVFQ 327
+KGI +AGN GP + T++N PWILTV AS +DR+ + LGN + F G S+F
Sbjct: 302 RKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFS 361
Query: 328 P--KDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVK 385
P K +P + K + +C + SL VKGKV++C GGG +K
Sbjct: 362 PKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGGGVE----STIK 417
Query: 386 NAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVI 445
+ GGA I+++D+ + A + PAT V++ G I YINST + A+ + + T
Sbjct: 418 SYGGAGAIIVSDQ---YLDNAQIFMAPATSVNSSVGDIIYRYINSTRS--ASAVIQKTRQ 472
Query: 446 GNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAW-----FEPLDFNTNPKSIFNI 500
AP V SFSSRGPN S +LKPDI PG+ ILAA+ LD +T S F I
Sbjct: 473 VTIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQ-FSKFTI 531
Query: 501 MSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFA 560
+SGTSMACPH++G+AA +KS HP W+PAAIKSA++T+A ++ + + FA
Sbjct: 532 LSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVNKDAE--------FA 583
Query: 561 IGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILV-HRPVA----------- 608
G G +NP RA PGLVYD+ Y+ +LCG GY+ + LV R V+
Sbjct: 584 YGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHD 643
Query: 609 QLNYPSFSVTLGPAQT-----FTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKV 663
LNYP+ +TL A+T F R VTNVG S Y V AP+GV ++V+P L FSK
Sbjct: 644 SLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKA 703
Query: 664 NQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISV 705
+QK ++ V T G+ G + W S ++SVRSPI +
Sbjct: 704 SQKRSFKVVV--KAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 239/532 (44%), Gaps = 95/532 (17%)
Query: 49 YKNVISGFAAKLTEEEV--------------------QDMKKKNGFVSARPERKVRLQTT 88
Y+ V SGF+ KL E+ +MK K+ +S E V Q
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTIS---EDAVSPQMD 162
Query: 89 HSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFST 148
S ++G + W GKG+ + I+D G+ +HP ++KG DF
Sbjct: 163 DSAPYIGAND---AWDLGYTGKGIKVAIIDTGVEYNHPDLKKN-----FGQYKG-YDF-- 211
Query: 149 CNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAP 208
+N T +P + HGTHVAGT A A GT G+AP
Sbjct: 212 VDNDYDPKETPT-------GDPRGEATDHGTHVAGTVA------------ANGTIKGVAP 252
Query: 209 YAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGG-SVPFFNDSIAVGSFA 267
A L Y+V G TE +++AG++ A++DG DV+++S+G + P + S A+
Sbjct: 253 DATLLAYRVLGPGGSGTTE-NVIAGVERAVQDGADVMNLSLGNSLNNPDWATSTALD--W 309
Query: 268 AIQKGIFVSCAAGNSGPFNSTI-----SNEAPWILTVGASTLDRSIVA-------TAKLG 315
A+ +G+ + GNSGP T+ S EA ++VGA+ L + A +AK+
Sbjct: 310 AMSEGVVAVTSNGNSGPNGWTVGSPGTSREA---ISVGATQLPLNEYAVTFGSYSSAKVM 366
Query: 316 NREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI 375
+ D K+ + LV AG+ + G D+ GKV + +R G I
Sbjct: 367 GYNKEDDVKALNNKE-----VELVEAGIGEAKD--------FEGKDLTGKVAVVKR-GSI 412
Query: 376 ARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPM 435
A + K + K AG M++ N+ +P +S + G K+ S + + T
Sbjct: 413 AFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGETKT 472
Query: 436 ATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPK 495
FK TV +L V FSSRGP + ++KPDI PG++I++ P +P
Sbjct: 473 T---FKLTV-SKALGEQVADFSSRGP-VMDTWMIKPDISAPGVNIVSTI--PTHDPDHPY 525
Query: 496 SIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTA-DLLNMNGE 546
+ GTSMA PH++G A++K + P WS IK+A+M TA L + +GE
Sbjct: 526 G-YGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGE 576
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 138/542 (25%), Positives = 222/542 (40%), Gaps = 95/542 (17%)
Query: 109 GKGVIIGILDGGINPDHPSF--SDEGMPPPPAKWKGRCDFSTC------------NNKLI 154
G G ++ ++D G + +H ++ +D+ A+++ + D N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKVA 176
Query: 155 GARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAI 214
++ +G +D + HGTHV+G +G NA S G P A L +
Sbjct: 177 YYHDYSKDGKT-----AVDQE-HGTHVSGILSG----NAPSETKEPYRLEGAMPEAQLLL 226
Query: 215 YKV-CFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN--DSIAVGSFAAIQK 271
+V G D + A +DA + G V+++S G ++ + N D A K
Sbjct: 227 MRVEIVNGLADYARNYAQAIIDA-VNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSK 285
Query: 272 GIFVSCAAGNSGPFNSTIS---------------NEAPWILTVGASTLDRSIVATAKLGN 316
G+ + +AGN F A LTV + + D+ + TA +
Sbjct: 286 GVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKT 345
Query: 317 REEFDGE-SVFQPKDF-PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGG 374
++ D E V F P YA G E F DVKGK+ L ERG
Sbjct: 346 ADQQDKEMPVLSTNRFEPNKAYDYAYAN-RGMKEDDFK--------DVKGKIALIERGD- 395
Query: 375 IARIFKGEQVKNAGGAAMILMNDEPNAFSV-IADPHVLPATHVSNDAGLKIKSYINSTAT 433
I K K AG +++ +++ F + + + +PA +S GL +K
Sbjct: 396 IDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKE------N 449
Query: 434 PMATIIFKGT--VIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFN 491
P TI F T V+ + + FSS G L + G +KPDI PG IL++
Sbjct: 450 PQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSV------- 500
Query: 492 TNPKSIFNIMSGTSMACPHLSGIAALLK----SSHPYWSPAA----IKSALMTTADLLNM 543
N K + +SGTSM+ P ++GI LL+ + +P +P+ K LM++A L
Sbjct: 501 ANNK--YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYD 558
Query: 544 NGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK-EVGIL 602
E+ P GAG V+ +A+ +Y D+ + SDK EV +
Sbjct: 559 EDEKAY---FSPR---QQGAGAVDAKKAS-AATMYVTDKDNTSSKVHLNNVSDKFEVTVT 611
Query: 603 VH 604
VH
Sbjct: 612 VH 613
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 129/533 (24%), Positives = 214/533 (40%), Gaps = 90/533 (16%)
Query: 62 EEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLH---QGMGVWKESNFGKGVIIGILD 118
EE V D K N P + T + L+ Q + +++ G G ++ ++D
Sbjct: 73 EETVAD--KANDLAPQAPAKTTDTPATSKATIRDLNDPSQVKTLQEKAGKGAGTVVAVID 130
Query: 119 GGINPDHPSF--SDEGMPPPPAKWKGRCDFSTC------------NNKLIGARTFNIEGN 164
G + +H ++ +D+ A+++ + D N+K+ ++ +G
Sbjct: 131 AGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKIAYYHDYSKDGK 186
Query: 165 VKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD 224
+D + HGTHV+G +G NA S G P A L + +V +
Sbjct: 187 T-----AVDQE-HGTHVSGILSG----NAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLA 236
Query: 225 CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN--DSIAVGSFAAIQKGIFVSCAAGNS 282
+ + A+ G V+++S G ++ + N D A KG+ + +AGN
Sbjct: 237 DYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGND 296
Query: 283 GPFNSTIS---------------NEAPWILTVGASTLDRSIVATAKLGNREEFDGES-VF 326
F A LTV + + D+ + TA + ++ D E V
Sbjct: 297 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVL 356
Query: 327 QPKDF-PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVK 385
F P YA G E F DVKGK+ L ERG I K K
Sbjct: 357 STNRFEPNKAYDYAYAN-RGMKEDDFK--------DVKGKIALIERGD-IDFKDKIANAK 406
Query: 386 NAGGAAMILMNDEPNAFSV-IADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGT- 443
AG +++ +++ F + + + +PA +S GL +K P TI F T
Sbjct: 407 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKE------NPQKTITFNATP 460
Query: 444 -VIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMS 502
V+ + + FSS G L + G +KPDI PG IL++ N K + +S
Sbjct: 461 KVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSV-------ANNK--YAKLS 509
Query: 503 GTSMACPHLSGIAALLK----SSHPYWSPAA----IKSALMTTADLLNMNGER 547
GTSM+ P ++GI LL+ + +P +P+ K LM++A L E+
Sbjct: 510 GTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEK 562
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 134/541 (24%), Positives = 219/541 (40%), Gaps = 93/541 (17%)
Query: 109 GKGVIIGILDGGINPDHPSF--SDEGMPPPPAKWKGRCDFSTC------------NNKLI 154
G G ++ ++D G + +H ++ +D+ A+++ + D N+K+
Sbjct: 121 GAGTVVAVIDAGFDKNHEAWRLTDKTK----ARYQSKEDLEKAKKEHGITYGEWVNDKVA 176
Query: 155 GARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAI 214
++ +G +D + HGTHV+G +G NA S G P A L +
Sbjct: 177 YYHDYSKDGKT-----AVDQE-HGTHVSGILSG----NAPSETKEPYRLEGAMPEAQLLL 226
Query: 215 YKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN--DSIAVGSFAAIQKG 272
+V + + + A+ G V+++S G ++ + N D A KG
Sbjct: 227 MRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKG 286
Query: 273 IFVSCAAGNSGPFNSTIS---------------NEAPWILTVGASTLDRSIVATAKLGNR 317
+ + +AGN F A LTV + + D+ + TA +
Sbjct: 287 VSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTD 346
Query: 318 EEFDGES-VFQPKDF-PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI 375
++ D E V F P YA G E F DVKGK+ L ERG I
Sbjct: 347 DQQDKEMPVLSTNRFEPNKAYDYAYAN-RGMKEDDFK--------DVKGKIALIERGD-I 396
Query: 376 ARIFKGEQVKNAGGAAMILMNDEPNAFSV-IADPHVLPATHVSNDAGLKIKSYINSTATP 434
K K AG +++ +++ F + + + +PA +S GL +K P
Sbjct: 397 DFKDKVANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NP 450
Query: 435 MATIIFKGT--VIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNT 492
TI F T V+ + + FSS G L + G +KPDI PG IL++
Sbjct: 451 QKTITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSV-------A 501
Query: 493 NPKSIFNIMSGTSMACPHLSGIAALLK----SSHPYWSPAA----IKSALMTTADLLNMN 544
N K + +SGTSM+ P ++GI LL+ + +P +P+ K LM++A L
Sbjct: 502 NNK--YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDE 559
Query: 545 GERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK-EVGILV 603
E+ P GAG V+ +A+ +Y D+ + SDK EV + V
Sbjct: 560 DEKAY---FSPR---QQGAGAVDAKKAS-AATMYVTDKDNTSSKVHLNNVSDKFEVTVTV 612
Query: 604 H 604
H
Sbjct: 613 H 613
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 143/589 (24%), Positives = 232/589 (39%), Gaps = 94/589 (15%)
Query: 62 EEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLH---QGMGVWKESNFGKGVIIGILD 118
EE V D K N P + T + L+ Q + +++ G G ++ ++D
Sbjct: 73 EETVAD--KANDLALQAPAKTADTPATSKATIRDLNDPSQVKTLQEKAGKGAGTVVAVID 130
Query: 119 GGINPDHPSFSDEGMPPPPAKWKGRCDFSTC------------NNKLIGARTFNIEGNVK 166
G + +H ++ A+++ + D N+K+ ++ +G
Sbjct: 131 AGFDKNHEAW--RLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDGKT- 187
Query: 167 GTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCT 226
+D + HGTHV+G +G NA S G P A L + +V +
Sbjct: 188 ----AVDQE-HGTHVSGILSG----NAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLADY 238
Query: 227 ESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN--DSIAVGSFAAIQKGIFVSCAAGNSGP 284
+ + A+ G V+++S G ++ + N D A KG+ + +AGN
Sbjct: 239 ARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSS 298
Query: 285 FNSTIS---------------NEAPWILTVGASTLDRSIVATAKLGNREEFDGES-VFQP 328
F A LTV + + D+ + TA + ++ D E V
Sbjct: 299 FGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLST 358
Query: 329 KDF-PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNA 387
F P YA G E F DVKGK+ L ERG I K K A
Sbjct: 359 NRFEPNKAYDYAYAN-RGMKEDDFK--------DVKGKIALIERGD-IDFKDKIANAKKA 408
Query: 388 GGAAMILMNDEPNAFSV-IADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGT--V 444
G +++ +++ F + + + +PA +S GL +K P TI F T V
Sbjct: 409 GAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKE------NPQKTITFNATPKV 462
Query: 445 IGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGT 504
+ + + FSS G L + G +KPDI PG IL++ N K + +SGT
Sbjct: 463 LPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSV-------ANNK--YAKLSGT 511
Query: 505 SMACPHLSGIAALLKS----SHPYWSPAA----IKSALMTTADLLNMNGERIVDETLRPA 556
SM+ P ++GI LL+ +P +P+ K LM++A L E+ P
Sbjct: 512 SMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY---FSPR 568
Query: 557 DIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK-EVGILVH 604
GAG V+ +A+ +Y D+ + SDK EV + VH
Sbjct: 569 ---QQGAGAVDAKKAS-AATMYVTDKDNTSSKVHLNNVSDKFEVTVTVH 613
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 145/589 (24%), Positives = 235/589 (39%), Gaps = 94/589 (15%)
Query: 62 EEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGV---WKESNFGKGVIIGILD 118
EE V D K N P + + T + L+ V +++ G G ++ ++D
Sbjct: 75 EETVAD--KANDLAPQAPAKTADIPATSKETIRDLNDPSHVKTLQEKAGKGAGTVVAVID 132
Query: 119 GGINPDHPSF--SDEGMPPPPAKWKGRCDFSTC------------NNKLIGARTFNIEGN 164
G + +H ++ +D+ A+++ + D N+K+ ++ +G
Sbjct: 133 AGFDKNHEAWRLTDKSK----ARYQSKEDLEKAKKDHGITYGEWVNDKVAYYHDYSKDGK 188
Query: 165 VKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD 224
+D + HGTHV+G +G NA S G P A L + +V +
Sbjct: 189 T-----AVDQE-HGTHVSGILSG----NAPSETKEPYRLEGAMPEAQLLLMRVEIVNGLA 238
Query: 225 CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN--DSIAVGSFAAIQKGIFVSCAAGNS 282
+ + A+ G V+++S G ++ + N D A KG+ + +AGN
Sbjct: 239 DYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGND 298
Query: 283 GPFNSTIS---------------NEAPWILTVGASTLDRSIVATAKLGNREEFDGES-VF 326
F A LTV + + D+ + TA + ++ D E V
Sbjct: 299 SSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVL 358
Query: 327 QPKDF-PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVK 385
F P YA G E F DVKGK+ L ERG I K K
Sbjct: 359 STNRFEPNKAYDYAYAN-RGTKEDDFK--------DVKGKIALIERGD-IDFKDKIANAK 408
Query: 386 NAGGAAMILMNDEPNAFSV-IADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTV 444
AG +++ +++ F + + + +PA +S GL +K T T AT T
Sbjct: 409 KAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNSKKTITFNATPKVLPTA 468
Query: 445 IGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGT 504
G L+ FSS G L + G +KPDI PG IL++ N K + +SGT
Sbjct: 469 SGTKLS----RFSSWG--LTADGNIKPDIAAPGQDILSSV-------ANNK--YAKLSGT 513
Query: 505 SMACPHLSGIAALLK----SSHPYWSPAA----IKSALMTTADLLNMNGERIVDETLRPA 556
SM+ P ++GI LL+ + +P +P+ K LM++A L E+ P
Sbjct: 514 SMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAY---FSPR 570
Query: 557 DIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK-EVGILVH 604
GAG V+ +A+ +Y D+ + SDK EV + VH
Sbjct: 571 ---QQGAGAVDAKKAS-AATMYVTDKDNTSSKVHLNNVSDKFEVTVTVH 615
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 708 | ||||||
| 255537205 | 767 | Cucumisin precursor, putative [Ricinus c | 0.998 | 0.921 | 0.731 | 0.0 | |
| 225426710 | 755 | PREDICTED: subtilisin-like protease SDD1 | 0.997 | 0.935 | 0.734 | 0.0 | |
| 224071660 | 708 | predicted protein [Populus trichocarpa] | 0.974 | 0.974 | 0.736 | 0.0 | |
| 356514105 | 749 | PREDICTED: subtilisin-like protease SDD1 | 0.992 | 0.938 | 0.695 | 0.0 | |
| 163644220 | 755 | subtilase [Lotus japonicus] | 0.991 | 0.929 | 0.708 | 0.0 | |
| 356565309 | 741 | PREDICTED: subtilisin-like protease SDD1 | 0.991 | 0.947 | 0.686 | 0.0 | |
| 356563246 | 749 | PREDICTED: subtilisin-like protease SDD1 | 0.995 | 0.941 | 0.685 | 0.0 | |
| 225426708 | 772 | PREDICTED: subtilisin-like protease SDD1 | 0.988 | 0.906 | 0.659 | 0.0 | |
| 449459724 | 745 | PREDICTED: subtilisin-like protease SDD1 | 0.987 | 0.938 | 0.667 | 0.0 | |
| 356514109 | 748 | PREDICTED: subtilisin-like protease SDD1 | 0.994 | 0.941 | 0.658 | 0.0 |
| >gi|255537205|ref|XP_002509669.1| Cucumisin precursor, putative [Ricinus communis] gi|223549568|gb|EEF51056.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/725 (73%), Positives = 608/725 (83%), Gaps = 18/725 (2%)
Query: 2 NLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSD--VQQRPFYSYKNVISGFAAK 59
NLQTYIV V QPEG ++ E ++NWH+SFL +S SS+ QQR YSY+N+ISGF+A+
Sbjct: 43 NLQTYIVHVNQPEGRTFSQPEDLKNWHKSFLSFSTASSEEEQQQRMLYSYQNIISGFSAR 102
Query: 60 LTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDG 119
LT+EEV+ M++ GFVSA ERK+RLQTTH+PSFLGLHQ MG+WK+S+FGKGVIIGILDG
Sbjct: 103 LTQEEVKAMEEITGFVSACLERKLRLQTTHTPSFLGLHQQMGLWKDSDFGKGVIIGILDG 162
Query: 120 GINPDHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFNIEGN-VKG--TEPPIDV 174
G+ P HPSFSDEGMP PPAKWKGRC+F S CNNKLIGARTFN+ +KG TEPPIDV
Sbjct: 163 GVYPSHPSFSDEGMPLPPAKWKGRCEFNASECNNKLIGARTFNLAAKTMKGAPTEPPIDV 222
Query: 175 DGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG-DVDCTESDLLAG 233
DGHGTH A TAAG FV N++ LGNAKGTA GMAP+AHLAIYKVCFG + DC ESD+LAG
Sbjct: 223 DGHGTHTASTAAGGFVYNSDVLGNAKGTAVGMAPFAHLAIYKVCFGDPNDDCPESDVLAG 282
Query: 234 LDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEA 293
LDAA++DGVDVLS+S+G S+PFF D+IA+GSFAAIQKGIFVSC+AGNSGP ST+SNEA
Sbjct: 283 LDAAVDDGVDVLSLSLGDVSMPFFQDNIAIGSFAAIQKGIFVSCSAGNSGPSKSTLSNEA 342
Query: 294 PWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCG 353
PWILTVGAST+DR IVA AKLGN EE DGESV QP +FP T LP+VYAGMN KP+SAFCG
Sbjct: 343 PWILTVGASTIDRRIVAIAKLGNGEELDGESVSQPSNFPTTLLPIVYAGMNSKPDSAFCG 402
Query: 354 NGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413
G+L G++VK KVV+CERGGGI RI KG++VKNAGGAAMIL+NDE N FS IAD HVLPA
Sbjct: 403 EGALEGMNVKDKVVMCERGGGIGRIAKGDEVKNAGGAAMILVNDETNGFSTIADAHVLPA 462
Query: 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI 473
THVS AGLKIK+YINST TPMATI+FKGTVIG+S +P V SFSSRGP+LASPGILKPDI
Sbjct: 463 THVSFAAGLKIKAYINSTKTPMATILFKGTVIGDSSSPAVTSFSSRGPSLASPGILKPDI 522
Query: 474 IGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSA 533
IGPG+SILAAW PLD NTN K FNIMSGTSM+CPHLSGIAALLKSSHPYWSPAAIKSA
Sbjct: 523 IGPGVSILAAWPFPLDNNTNTKLTFNIMSGTSMSCPHLSGIAALLKSSHPYWSPAAIKSA 582
Query: 534 LMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLG 593
++TTAD+LNM G+ IVDET +PAD FA GAGHVNPSRANDPGLVYDIQPDDYIPYLCGL
Sbjct: 583 IVTTADILNMEGKPIVDETHQPADFFATGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLN 642
Query: 594 YSDKEVGILVHRPVA----------QLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNV 643
Y+D++V I+ HRP++ QLNYPSFSVTLGP QTF RTVTNVG S +A +
Sbjct: 643 YTDEQVSIIAHRPISCSTIQTIAEGQLNYPSFSVTLGPPQTFIRTVTNVGYANSVFAATI 702
Query: 644 VAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPI 703
+P GV VSVKPS+LYFSK+NQKATYS+TF+ +G G + +F QGYITWVS KY V SPI
Sbjct: 703 TSPPGVAVSVKPSRLYFSKLNQKATYSITFSHTGYGAKTSEFGQGYITWVSDKYFVGSPI 762
Query: 704 SVRLQ 708
SVR +
Sbjct: 763 SVRFK 767
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426710|ref|XP_002275471.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1068 bits (2763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/723 (73%), Positives = 598/723 (82%), Gaps = 17/723 (2%)
Query: 1 SNLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKL 60
S LQTYIV V+Q E S A+ E +E+WHRSFLP + +SD Q+R YSYKNVISGFAA+L
Sbjct: 35 SMLQTYIVHVKQLERSTTAQQENLESWHRSFLPVATATSDNQERLVYSYKNVISGFAARL 94
Query: 61 TEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGG 120
TEEEV+ M+ +GF+SA PE+ + L TTHSP FLGLHQ MG WKESNFGKGVIIG+LD G
Sbjct: 95 TEEEVRAMENMDGFISASPEKMLPLLTTHSPDFLGLHQEMGFWKESNFGKGVIIGVLDSG 154
Query: 121 INPDHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFNIEGN-VKGT--EPPIDVD 175
+ P HPSFS EG+PPPPAKWKG C+F S CNNKLIGAR+FN+ KG EPP+D D
Sbjct: 155 VLPSHPSFSGEGIPPPPAKWKGSCEFMASECNNKLIGARSFNVGAKATKGVTAEPPLDDD 214
Query: 176 GHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLD 235
GHGTH A TAAGAFVKNA+ LGNAKGTA GMAPYAHLAIYKVCFG D C ESD++AGLD
Sbjct: 215 GHGTHTASTAAGAFVKNADVLGNAKGTAVGMAPYAHLAIYKVCFGPD--CPESDVIAGLD 272
Query: 236 AAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPW 295
AA+EDGVDV+SIS+G +VPFF D+IAVGSFAA+QKGIFVSC+AGNSGPFN+T+SNEAPW
Sbjct: 273 AAVEDGVDVISISLGDPAVPFFQDNIAVGSFAAMQKGIFVSCSAGNSGPFNTTLSNEAPW 332
Query: 296 ILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNG 355
ILTVGAS++DR+I A AKLGN E+FDGE++FQP DFP T LPLVYAGMNGKPESA CG G
Sbjct: 333 ILTVGASSIDRTIKAAAKLGNGEQFDGETLFQPSDFPATQLPLVYAGMNGKPESAVCGEG 392
Query: 356 SLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATH 415
SL IDVKGKVVLC+RGGGIARI KG +VKNAGGAAMIL+N E + FS +AD HVLPATH
Sbjct: 393 SLKNIDVKGKVVLCDRGGGIARIDKGTEVKNAGGAAMILVNQESDGFSTLADAHVLPATH 452
Query: 416 VSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIG 475
VS AGLKIK+YINSTATP A I+FKGTVIGN L+P + SFSSRGP+ ASPGILKPDIIG
Sbjct: 453 VSYAAGLKIKAYINSTATPTAAILFKGTVIGNPLSPAITSFSSRGPSFASPGILKPDIIG 512
Query: 476 PGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALM 535
PG+SILAAW PLD N N KS FNI+SGTSM+CPHLSGIAALLKSSHP WSPAAIKSA+M
Sbjct: 513 PGVSILAAWPFPLDNNINSKSTFNIISGTSMSCPHLSGIAALLKSSHPDWSPAAIKSAIM 572
Query: 536 TTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYS 595
TTADLLN+ G+ IVDE L PADIFA GAGHVNPSRANDPGLVYDI+PDDYIPYLCGLGY+
Sbjct: 573 TTADLLNVGGKPIVDERLLPADIFATGAGHVNPSRANDPGLVYDIEPDDYIPYLCGLGYT 632
Query: 596 DKEVGILVHR----------PVAQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVA 645
D EVGIL HR P +LNYPSFSV LGP QTFTRTVTNVG+ YSSY V +
Sbjct: 633 DTEVGILAHRSIKCSEESSIPEGELNYPSFSVALGPPQTFTRTVTNVGEAYSSYTVTAIV 692
Query: 646 PQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISV 705
PQGV VSV P KLYFSKVNQK TYSVTF+ + S S +FAQGY+ WVS K+SV SPIS+
Sbjct: 693 PQGVDVSVNPDKLYFSKVNQKLTYSVTFSHNSSSGKSSKFAQGYLKWVSGKHSVGSPISI 752
Query: 706 RLQ 708
+
Sbjct: 753 MFK 755
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071660|ref|XP_002303551.1| predicted protein [Populus trichocarpa] gi|222840983|gb|EEE78530.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/709 (73%), Positives = 598/709 (84%), Gaps = 19/709 (2%)
Query: 18 LAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSA 77
+AE E +E+W++SFLP S SS+ QQR Y+Y+NV+SGFAA+LT+EEV+ M++K+GF+SA
Sbjct: 1 MAEFEDLESWYQSFLPVSTASSEKQQRMLYAYQNVMSGFAARLTQEEVKSMEEKDGFLSA 60
Query: 78 RPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPP 137
RPER + LQTTH+P FLGLHQ +G WKESNFGKGVIIG+LDGGI P HPSFSDEGMPPPP
Sbjct: 61 RPERILHLQTTHTPRFLGLHQELGFWKESNFGKGVIIGVLDGGIFPSHPSFSDEGMPPPP 120
Query: 138 AKWKGRCDF--STCNNKLIGARTFNIEGNVKG----TEPPIDVDGHGTHVAGTAAGAFVK 191
AKWKGRCDF S CNNKLIGAR+FNI K TEPPIDVDGHGTH A TAAGAFVK
Sbjct: 121 AKWKGRCDFNASDCNNKLIGARSFNIAAKAKKGSAATEPPIDVDGHGTHTASTAAGAFVK 180
Query: 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFG--GDVDCTESDLLAGLDAAIEDGVDVLSISI 249
+AE LGNA+GTA G+AP+AHLAIYKVCFG GD DC ESD+LAGLDAA++DGVDVLS+S+
Sbjct: 181 DAEVLGNARGTAVGIAPHAHLAIYKVCFGDPGD-DCPESDILAGLDAAVQDGVDVLSLSL 239
Query: 250 GGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIV 309
G SVP FND+IA+GSFAAIQKGIFVSC+AGNSGPFN T+SNEAPWILTVGAST+DR
Sbjct: 240 GEDSVPLFNDTIAIGSFAAIQKGIFVSCSAGNSGPFNGTLSNEAPWILTVGASTVDRRFS 299
Query: 310 ATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLC 369
ATA+LGN E+ DGES+ Q +FP T LPLVYAGM+GKP S+ CG G+L G+DVKGK+VLC
Sbjct: 300 ATARLGNGEQIDGESLSQHSNFPSTLLPLVYAGMSGKPNSSLCGEGALEGMDVKGKIVLC 359
Query: 370 ERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429
ERGGGI RI KG +VKNAGGAAMILMN+E + FS AD HVLPATHVS AGLKIK+YIN
Sbjct: 360 ERGGGIGRIAKGGEVKNAGGAAMILMNEEVDGFSTNADVHVLPATHVSFAAGLKIKAYIN 419
Query: 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489
ST PMATI+FKGTVIG+ +P V SFSSRGP+LASPGILKPDIIGPG+SILAAW PLD
Sbjct: 420 STQAPMATILFKGTVIGDPSSPFVASFSSRGPSLASPGILKPDIIGPGVSILAAWPFPLD 479
Query: 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIV 549
NT+ KS FNI+SGTSM+CPHLSGIAALLKSSHPYWSPAAIKSA+MTTAD LNM G+ IV
Sbjct: 480 NNTSSKSTFNIISGTSMSCPHLSGIAALLKSSHPYWSPAAIKSAIMTTADTLNMEGKLIV 539
Query: 550 DETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHR---- 605
D+TL+PADIFA GAGHVNPSRAN+PGLVYDIQPDDYIPYLCGLGY+D EV I+VH
Sbjct: 540 DQTLQPADIFATGAGHVNPSRANNPGLVYDIQPDDYIPYLCGLGYADNEVSIIVHEQVKC 599
Query: 606 ------PVAQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLY 659
P +LNYPSF+VTLGP+QTFTRTVTNVG V S+Y V +V+P GV V+VKPSKLY
Sbjct: 600 SEKPSIPEGELNYPSFAVTLGPSQTFTRTVTNVGDVNSAYEVAIVSPPGVDVTVKPSKLY 659
Query: 660 FSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISVRLQ 708
FSKVNQKATYSV F+R+ G + AQGYI W SAKY+VRSPI+V L+
Sbjct: 660 FSKVNQKATYSVAFSRTEYGGKISETAQGYIVWASAKYTVRSPIAVSLK 708
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514105|ref|XP_003525747.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/719 (69%), Positives = 592/719 (82%), Gaps = 16/719 (2%)
Query: 1 SNLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKL 60
S+ +TYI+ V P+G LA+SE +E+W+RSF+P ++ SS+ Q R YSY+NV+SGFAA+L
Sbjct: 30 SSSKTYIIHVTGPQGKTLAQSEDLESWYRSFMPPTIMSSEEQPRMIYSYRNVMSGFAARL 89
Query: 61 TEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGG 120
TEEE++ ++KKNGF+SA PER + QTTH+P FLGL Q MG WKESNFGKGVI+G++D G
Sbjct: 90 TEEELRSVQKKNGFISAHPERMLHRQTTHTPQFLGLQQDMGFWKESNFGKGVIVGVVDSG 149
Query: 121 INPDHPSFSDEGMPPPPAKWKGRCDFST--CNNKLIGARTFNIEGN-VKGTEPPIDVDGH 177
I PDHPSFSD GMPPPP KWKGRC+ + CNNKLIGAR+FN+ +KG + PID DGH
Sbjct: 150 IEPDHPSFSDAGMPPPPLKWKGRCELNATFCNNKLIGARSFNLAATAMKGADSPIDEDGH 209
Query: 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAA 237
GTH + TAAGAFV +AE LGNAKGTAAG+APYAHLA+Y+VCFG D C ESD+LA LDAA
Sbjct: 210 GTHTSSTAAGAFVDHAEVLGNAKGTAAGIAPYAHLAMYRVCFGED--CAESDILAALDAA 267
Query: 238 IEDGVDVLSISIGGGSVP-FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWI 296
+EDGVDV+SIS+G P FFNDSIA+G+FAA+QKGIFVSCAAGNSGPF+ ++ N APW+
Sbjct: 268 VEDGVDVISISLGLSEPPPFFNDSIAIGAFAAMQKGIFVSCAAGNSGPFHGSLVNGAPWV 327
Query: 297 LTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGS 356
LTVGAS +DRSI ATAKLGN +EFDGESVFQP DF T LPL YAG NGK E+AFC NGS
Sbjct: 328 LTVGASNIDRSIAATAKLGNGQEFDGESVFQPSDFSPTLLPLAYAGKNGKQEAAFCANGS 387
Query: 357 LSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHV 416
L+ D +GKVVLCERGGGI RI KGE+VK GGAAMILMNDE N FSV+AD HVLPATH+
Sbjct: 388 LNDCDFRGKVVLCERGGGIGRIAKGEEVKRVGGAAMILMNDESNGFSVLADVHVLPATHL 447
Query: 417 SNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGP 476
S D+GLKIK+YINSTA P ATI+FKGT+IGNSLAP V SFSSRGPNL SPGILKPDIIGP
Sbjct: 448 SYDSGLKIKAYINSTAIPTATILFKGTIIGNSLAPAVTSFSSRGPNLPSPGILKPDIIGP 507
Query: 477 GLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMT 536
G++ILAAW PL+ +T+ KS FNIMSGTSM+CPHLSG+AALLKSSHP+WSPAAIKSA+MT
Sbjct: 508 GVNILAAWPFPLNNDTDSKSTFNIMSGTSMSCPHLSGVAALLKSSHPHWSPAAIKSAIMT 567
Query: 537 TADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSD 596
+AD++N + IVDETL PAD+FA G+GHVNPSRANDPGLVYDIQPDDYIPYLCGLGY D
Sbjct: 568 SADIINFEHKLIVDETLYPADVFATGSGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYGD 627
Query: 597 KEVGILVHR----------PVAQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVAP 646
EVGI+ H+ P +LNYPSFSV LG QTFTRTVTNVG+ SSY V V+AP
Sbjct: 628 TEVGIIAHKTITCSETSSIPEGELNYPSFSVVLGSPQTFTRTVTNVGEANSSYVVMVMAP 687
Query: 647 QGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISV 705
+GV V V+P+ L FS+ NQK TYSV+F+R SG + ++AQG++ WVSAK++VRSPI V
Sbjct: 688 EGVEVKVRPNNLTFSEANQKETYSVSFSRIESGNETAEYAQGFLQWVSAKHTVRSPILV 746
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|163644220|dbj|BAF95753.1| subtilase [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/718 (70%), Positives = 581/718 (80%), Gaps = 16/718 (2%)
Query: 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEE 63
+ YI+ V PEG L ESE +E+W+ SFLP +L SS+ Q R YSYKNV+ GFAA LT+E
Sbjct: 39 KIYIIHVTGPEGKMLTESEDLESWYHSFLPPTLMSSEEQPRVIYSYKNVLRGFAASLTQE 98
Query: 64 EVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINP 123
E+ ++KKNGF+SA P+R + QTTH+P FLGL Q GVWKESNFGKGVIIG+LD GI P
Sbjct: 99 ELSAVEKKNGFISAHPQRVLHRQTTHTPKFLGLQQDTGVWKESNFGKGVIIGVLDSGITP 158
Query: 124 DHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFNIEG---NVKGTEPPIDVDGHG 178
HPSFSD G+PPPP KWKGRCD + CNNKLIGAR FN+ N K E PID DGHG
Sbjct: 159 GHPSFSDVGIPPPPPKWKGRCDLNVTACNNKLIGARAFNLAAEAMNGKKAEAPIDEDGHG 218
Query: 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAI 238
TH A TAAGAFV AE LGNAKGTAAGMAP+AHLAIYKVCFG D C ESD+LA LDAA+
Sbjct: 219 THTASTAAGAFVNYAEVLGNAKGTAAGMAPHAHLAIYKVCFGED--CPESDILAALDAAV 276
Query: 239 EDGVDVLSISIGGGSVP-FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWIL 297
EDGVDV+SIS+G P FFNDS A+G+FAA+QKGIFVSCAAGNSGPFNS+I N APWIL
Sbjct: 277 EDGVDVISISLGLSEPPPFFNDSTAIGAFAAMQKGIFVSCAAGNSGPFNSSIVNAAPWIL 336
Query: 298 TVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSL 357
TVGAST+DR IVATAKLGN +EFDGESVFQP F T LPL YAG NGK ESAFC NGSL
Sbjct: 337 TVGASTIDRRIVATAKLGNGQEFDGESVFQPSSFTPTLLPLAYAGKNGKEESAFCANGSL 396
Query: 358 SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVS 417
+GKVVLCERGGGIARI KGE+VK AGGAAMILMNDE NAFS+ AD H LPATHVS
Sbjct: 397 DDSAFRGKVVLCERGGGIARIAKGEEVKRAGGAAMILMNDETNAFSLSADVHALPATHVS 456
Query: 418 NDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPG 477
AG++IK+YINSTATP ATI+FKGTVIGNSLAP V SFSSRGPNL SPGILKPDIIGPG
Sbjct: 457 YAAGIEIKAYINSTATPTATILFKGTVIGNSLAPAVASFSSRGPNLPSPGILKPDIIGPG 516
Query: 478 LSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTT 537
++ILAAW PL +T+ K FNI SGTSM+CPHLSGIAALLKSSHP+WSPAAIKSA+MT+
Sbjct: 517 VNILAAWPFPLSNSTDSKLTFNIESGTSMSCPHLSGIAALLKSSHPHWSPAAIKSAIMTS 576
Query: 538 ADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK 597
AD +N+ + IVDETL+P D+FA G+GHVNPSRANDPGLVYDIQPDDYIPYLCGLGYS+
Sbjct: 577 ADTINLGNKLIVDETLQPTDLFATGSGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSET 636
Query: 598 EVGILVHR--------PVAQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVAPQGV 649
EVGI+ HR P +LNYPSFSV LG ++TFTRTVTNVG+ +SSY + V APQGV
Sbjct: 637 EVGIIAHRKIKCSASIPEGELNYPSFSVELGSSKTFTRTVTNVGEAHSSYDLIVAAPQGV 696
Query: 650 VVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISVRL 707
V V+P KL FS+VNQK TYSVTF+R+G G + ++AQG++ WVS K++VRSPISV+
Sbjct: 697 DVKVQPYKLNFSEVNQKETYSVTFSRTGLGNKTQEYAQGFLKWVSTKHTVRSPISVKF 754
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565309|ref|XP_003550884.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/718 (68%), Positives = 581/718 (80%), Gaps = 16/718 (2%)
Query: 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEE 63
+TYI+ V+ P+ L ++E +E+W+ SF+P + SS+ Q R YSY+NV+SGFAA+LTEE
Sbjct: 25 KTYIIHVEGPQDKTLDQTEDLESWYHSFMPPTTMSSEEQPRMIYSYRNVMSGFAARLTEE 84
Query: 64 EVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINP 123
E++ M+KKNGF+SARPER + TT++P FLGL + G+WKESNFGKG+IIG+LD GI P
Sbjct: 85 ELRTMEKKNGFISARPERMLHCLTTNTPQFLGLQKQTGLWKESNFGKGIIIGVLDSGITP 144
Query: 124 DHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFNI-EGNVKGTEPPIDVDGHGTH 180
HPSFSD GMPPPP KWKGRC+ + CNNKLIG R FN+ E KG E ID DGHGTH
Sbjct: 145 GHPSFSDAGMPPPPPKWKGRCEINVTACNNKLIGVRAFNLAEKLAKGAEAAIDEDGHGTH 204
Query: 181 VAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIED 240
A TAAGAFV +AE LGNAKGTAAG+APYAHLAIY+VCFG D C ESD+LA +DAA+ED
Sbjct: 205 TASTAAGAFVDHAELLGNAKGTAAGIAPYAHLAIYRVCFGKD--CHESDILAAMDAAVED 262
Query: 241 GVDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTV 299
GVDV+SIS+G + F+DS A+G+FAA+QKGIFVSCAAGNSGPF+ ++ N APW+LTV
Sbjct: 263 GVDVISISLGSHTPKSIFDDSTAIGAFAAMQKGIFVSCAAGNSGPFHGSLINGAPWVLTV 322
Query: 300 GASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSG 359
GAS +DRSI ATAKLGN +EFDGESVFQP DF T LPL YAG NGK E+AFC NGSL+
Sbjct: 323 GASNIDRSIAATAKLGNGQEFDGESVFQPSDFSPTLLPLAYAGKNGKQEAAFCANGSLND 382
Query: 360 IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSND 419
D +GKVVLCERGGGI RI KGE+VK GGAAMIL NDE N FS+ AD HVLPATHVS D
Sbjct: 383 SDFRGKVVLCERGGGIGRIPKGEEVKRVGGAAMILANDESNGFSLSADVHVLPATHVSYD 442
Query: 420 AGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLS 479
AGLKIK+YINSTA P+ATI+FKGT+IGNSLAP V SFSSRGPNL SPGILKPDIIGPG++
Sbjct: 443 AGLKIKAYINSTAIPIATILFKGTIIGNSLAPAVTSFSSRGPNLPSPGILKPDIIGPGVN 502
Query: 480 ILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539
ILAAW PL+ +T+ KS FN MSGTSM+CPHLSGIAALLKSSHP+WSPAAIKSA+MT+AD
Sbjct: 503 ILAAWPFPLNNDTDSKSTFNFMSGTSMSCPHLSGIAALLKSSHPHWSPAAIKSAIMTSAD 562
Query: 540 LLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEV 599
++N + IVDETL PAD+FA G+GHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSD +V
Sbjct: 563 IINFERKLIVDETLHPADVFATGSGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDTQV 622
Query: 600 GILVHR----------PVAQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVAPQGV 649
GI+ H+ P +LNYPSFSV LG QTFTRTVTNVG+ SSY V V+AP+GV
Sbjct: 623 GIIAHKTIKCSETSSIPEGELNYPSFSVVLGSPQTFTRTVTNVGEANSSYVVMVMAPEGV 682
Query: 650 VVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISVRL 707
V V+P+KLYFS+ NQK TYSVTF+R SG + ++ QG++ WVSAK+ VRSPISV
Sbjct: 683 EVRVQPNKLYFSEANQKDTYSVTFSRIKSGNETVKYVQGFLQWVSAKHIVRSPISVNF 740
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563246|ref|XP_003549875.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/721 (68%), Positives = 589/721 (81%), Gaps = 16/721 (2%)
Query: 1 SNLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKL 60
S+ +TYI+ V+ P+G +LA+SE +E+W+ SF+P ++ SS+ Q R YSY+NV+SGFAA+L
Sbjct: 30 SSSKTYIIHVEGPQGKNLAQSEDLESWYHSFMPPTIMSSEEQPRMIYSYRNVMSGFAARL 89
Query: 61 TEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGG 120
TEEE++ ++KKNGF+ A+PER + QTTH+P FLGL Q MG WKESNFGKGVI+G++D G
Sbjct: 90 TEEELRAVQKKNGFIYAQPERILHRQTTHTPQFLGLQQDMGFWKESNFGKGVIVGVVDSG 149
Query: 121 INPDHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFNIEGN-VKGTEPPIDVDGH 177
I P HPSFSD GMPPPP KWKG+C+ + CNNKLIGAR+FN+ +KG + PID DGH
Sbjct: 150 ITPGHPSFSDAGMPPPPPKWKGKCELNATACNNKLIGARSFNLAATAMKGADSPIDEDGH 209
Query: 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAA 237
GTH A TAAGAFV +AE LGNAKGTAAG+AP+AHLA+Y+VCFG D C ESD+LA LDAA
Sbjct: 210 GTHTASTAAGAFVDHAELLGNAKGTAAGIAPHAHLAMYRVCFGED--CPESDILAALDAA 267
Query: 238 IEDGVDVLSISIGGGSVP-FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWI 296
+EDGVDV+SIS+G P FF+DS A+G+FAA+QKGIFVSCAAGNSGPF+ ++ N APW+
Sbjct: 268 VEDGVDVISISLGLSEPPPFFHDSTAIGAFAAMQKGIFVSCAAGNSGPFHGSLINGAPWV 327
Query: 297 LTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGS 356
LTVGAS +DRSI ATAKLGN +EFDGESVFQP DF T LPL YAG NGK E+AFC NGS
Sbjct: 328 LTVGASNIDRSIAATAKLGNGQEFDGESVFQPSDFSPTLLPLAYAGKNGKQEAAFCANGS 387
Query: 357 LSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHV 416
L+ D +GKVVLCERGGGI RI KGE+VK GGAAMIL NDE N FS+ AD HVLPATHV
Sbjct: 388 LNDSDFRGKVVLCERGGGIGRIPKGEEVKRVGGAAMILANDESNGFSLSADVHVLPATHV 447
Query: 417 SNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGP 476
S DAGLKIK+YINSTA P+ATI+FKGT+IGNSLAP V SFSSRGPNL SPGILKPDIIGP
Sbjct: 448 SYDAGLKIKAYINSTAIPIATILFKGTIIGNSLAPAVTSFSSRGPNLPSPGILKPDIIGP 507
Query: 477 GLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMT 536
G++ILAAW PL+ +T+ KS FN MSGTSM+CPHLSGIAALLKSSHP+WSPAAIKSA+MT
Sbjct: 508 GVNILAAWPFPLNNDTDSKSTFNFMSGTSMSCPHLSGIAALLKSSHPHWSPAAIKSAIMT 567
Query: 537 TADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSD 596
+AD++N + IVDETL PAD+FA G+GHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSD
Sbjct: 568 SADIINFERKLIVDETLHPADVFATGSGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSD 627
Query: 597 KEVGILVHR----------PVAQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVAP 646
+VGI+ H+ P +LNYPSFSV LG QTFTRTVTNVG+ SSY V V+AP
Sbjct: 628 TQVGIIAHKTIKCSETSSIPEGELNYPSFSVVLGSPQTFTRTVTNVGEANSSYVVMVMAP 687
Query: 647 QGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISVR 706
+GV V ++P+KL FS NQK YSV+F+R SG + ++AQG++ WVSAK+SVRSPI V
Sbjct: 688 EGVEVRIQPNKLTFSGENQKEIYSVSFSRIESGNETAEYAQGFLQWVSAKHSVRSPILVN 747
Query: 707 L 707
Sbjct: 748 F 748
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426708|ref|XP_002275452.1| PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/723 (65%), Positives = 579/723 (80%), Gaps = 23/723 (3%)
Query: 2 NLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLT 61
+LQTYIV V++ +S+ +E+W+ SFLP + SS+ +QR YSY+NV++GFAAKLT
Sbjct: 57 HLQTYIVHVKRTHRRVFTKSDGLESWYESFLPVATASSNRKQRIVYSYRNVLNGFAAKLT 116
Query: 62 EEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGI 121
+EV+ M++K+GFVSARP+R + L TTHSPSFLGLHQ +G WK SN+GKGVIIG+LD G+
Sbjct: 117 AQEVKAMEEKDGFVSARPQRILPLHTTHSPSFLGLHQELGFWKGSNYGKGVIIGVLDTGL 176
Query: 122 NPDHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFNIEGNVKGTE--PPIDVDGH 177
PDHPSFSDEG+PPPPAKWKG+CDF ++CNNK+IGAR F+ G E PPID +GH
Sbjct: 177 FPDHPSFSDEGLPPPPAKWKGKCDFNWTSCNNKIIGARNFD-----SGAEAVPPIDEEGH 231
Query: 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAA 237
GTH A TAAG FV NA++LGNA GTA GMAP+AHLAIYKVC + C ++D+LA LD A
Sbjct: 232 GTHTASTAAGNFVPNADALGNANGTAVGMAPFAHLAIYKVC--SEFGCADTDILAALDTA 289
Query: 238 IEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWIL 297
IEDGVDVLS+S+GGGS PFF DSIA+G+F+AIQKGIFVSC+AGNSGP N ++SNEAPWIL
Sbjct: 290 IEDGVDVLSLSLGGGSAPFFADSIALGAFSAIQKGIFVSCSAGNSGPLNGSLSNEAPWIL 349
Query: 298 TVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSL 357
TVGAST+DR I+ATA LGN EEFDGES+FQP DFP T LPLVYAG NG SA C SL
Sbjct: 350 TVGASTIDRKIMATATLGNGEEFDGESLFQPSDFPSTLLPLVYAGANGNASSALCAPESL 409
Query: 358 SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVS 417
+DV GKVV+C+RGGGI RI KG++VK+AGGAAMIL NDE N FS + D HVLPATHVS
Sbjct: 410 KDVDVAGKVVVCDRGGGIGRIAKGQEVKDAGGAAMILTNDELNGFSTLVDAHVLPATHVS 469
Query: 418 NDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPG 477
AGLKIKSYI S + P ATI+FKGT+IG AP V SFSSRGP+L SPGILKPDIIGPG
Sbjct: 470 YAAGLKIKSYIKSDSAPTATIVFKGTIIGVPTAPEVTSFSSRGPSLESPGILKPDIIGPG 529
Query: 478 LSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTT 537
+SILAAW PL+ +T K FN++SGTSM+CPHLSGIAAL+KS+HP WSPAAIKSA++TT
Sbjct: 530 VSILAAWPFPLENDTTSKPTFNVISGTSMSCPHLSGIAALIKSAHPDWSPAAIKSAIITT 589
Query: 538 ADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK 597
ADL N+ + I+DET +PAD+FA GAGHVNPS ANDPGL+YD++PDDYIPYLCGLGY+D+
Sbjct: 590 ADLHNLENKPIIDETFQPADLFATGAGHVNPSAANDPGLIYDLEPDDYIPYLCGLGYTDE 649
Query: 598 EVGILVHR----------PVAQLNYPSFSVTLGPAQ-TFTRTVTNVGQVYSSYAVNVVAP 646
EVG++V+R P AQLNYPSFS+ LGP+ T++RTVTNVG SSY+V ++AP
Sbjct: 650 EVGLIVNRTLKCSEESSIPEAQLNYPSFSIALGPSSGTYSRTVTNVGAANSSYSVQILAP 709
Query: 647 QGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQ-FAQGYITWVSAKYSVRSPISV 705
GV VSV P KL F++VNQK TY V+F+R+ +G G+ FAQG++ WVS +SVRSPISV
Sbjct: 710 SGVEVSVNPDKLEFTEVNQKITYMVSFSRTSAGGEGGKPFAQGFLKWVSDSHSVRSPISV 769
Query: 706 RLQ 708
+
Sbjct: 770 MFE 772
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459724|ref|XP_004147596.1| PREDICTED: subtilisin-like protease SDD1-like [Cucumis sativus] gi|449513398|ref|XP_004164315.1| PREDICTED: subtilisin-like protease SDD1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/725 (66%), Positives = 569/725 (78%), Gaps = 26/725 (3%)
Query: 1 SNLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKL 60
SNL TYIV V++PE D ES WHRSFLP SLE+S+ Q YSY+NV+SGF+A+L
Sbjct: 28 SNLHTYIVHVKKPEVVDDLES-----WHRSFLPTSLENSEEQPTLLYSYRNVMSGFSARL 82
Query: 61 TEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGG 120
TEE V+ M++K+GFVSAR E V L TTHSP+FLGL++ G WK+SNFGKGVIIG+LDGG
Sbjct: 83 TEEHVKAMEEKDGFVSARRETIVHLHTTHSPNFLGLNRQFGFWKDSNFGKGVIIGVLDGG 142
Query: 121 INPDHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFNIEGN-VKGT-----EPPI 172
I P HPSF D GMP PPAKWKGRC+F S CNNKLIGAR+ N+ +KG + PI
Sbjct: 143 ITPSHPSFVDAGMPQPPAKWKGRCEFNFSACNNKLIGARSLNLASQALKGKITTLDDSPI 202
Query: 173 DVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLA 232
D DGHGTH A TAAG FV AE+LGNA GTA GMAP AHLAIYKVCFG C+ D+LA
Sbjct: 203 DEDGHGTHTASTAAGTFVDGAEALGNAFGTAVGMAPLAHLAIYKVCFGES--CSNVDILA 260
Query: 233 GLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNE 292
GLDAA+EDGVDVLSIS+GG VPFF D A+G+FAAIQKGIFVSC+A NSGPFN+T+SNE
Sbjct: 261 GLDAAVEDGVDVLSISLGGPPVPFFADITAIGAFAAIQKGIFVSCSAANSGPFNATLSNE 320
Query: 293 APWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFC 352
APWILTV AST+DR I ATAKLGN EEFDGES+FQP DFPQT LPLV+ G + A C
Sbjct: 321 APWILTVAASTIDRKITATAKLGNGEEFDGESLFQPNDFPQTFLPLVFPGEKNE-TVALC 379
Query: 353 GNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLP 412
GSL IDVKGKVV+C+RGGGIARI KG +VKNAGGAAMIL+N E + F+ AD HVLP
Sbjct: 380 AEGSLKNIDVKGKVVVCDRGGGIARIAKGVEVKNAGGAAMILLNAESDGFTTEADAHVLP 439
Query: 413 ATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPD 472
A+HVS+ A LKIK+YINST P ATI+FKGT IG+ +P + +FSSRGP+LASPGILKPD
Sbjct: 440 ASHVSHTAALKIKAYINSTTYPTATIVFKGTTIGDDFSPAIAAFSSRGPSLASPGILKPD 499
Query: 473 IIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKS 532
I GPG+SILAAW PLD NTN KS FNI+SGTSM+CPHLSGIAAL+KS+HP WSPAAIKS
Sbjct: 500 ITGPGVSILAAWPFPLDNNTNTKSTFNIVSGTSMSCPHLSGIAALIKSAHPDWSPAAIKS 559
Query: 533 ALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGL 592
++MTTA++ N+ G IVD+TL+PAD+FAIGAGHVNPS+A DPGLVYDIQPDDYIPYLCGL
Sbjct: 560 SIMTTANITNLEGNPIVDQTLQPADLFAIGAGHVNPSKAVDPGLVYDIQPDDYIPYLCGL 619
Query: 593 GYSDKEVGILVHRPV----------AQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVN 642
GY++ +V ++ H+P+ +LNYPSF V LG QTF+RTVT VG Y V
Sbjct: 620 GYTNNQVSLIAHKPIDCLTTTSIPEGELNYPSFMVKLGQVQTFSRTVTYVGSGREVYNVV 679
Query: 643 VVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSP 702
+ AP+GV V+V+P K+ FS +NQKATYSVTF R GS S +FA+GY+ WVSAK+ VRSP
Sbjct: 680 IEAPEGVSVTVRPRKVIFSALNQKATYSVTFKRIGSISPSTEFAEGYLKWVSAKHLVRSP 739
Query: 703 ISVRL 707
ISV+
Sbjct: 740 ISVKF 744
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514109|ref|XP_003525749.1| PREDICTED: subtilisin-like protease SDD1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/721 (65%), Positives = 569/721 (78%), Gaps = 17/721 (2%)
Query: 1 SNLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKL 60
S+ +TYI+ V+ P+ L ++E +E+W+ SF+P ++ SS+ Q R YSY NV+SGFAA+L
Sbjct: 30 SSSKTYIIHVKGPQDKSLDQTEDLESWYHSFMPPTIMSSEEQPRMIYSYLNVMSGFAARL 89
Query: 61 TEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGG 120
TEEE+ ++KK+GF+SARPER + QTT++P FLGL + G+WKESNFGKG+IIG+LD G
Sbjct: 90 TEEELIAVEKKDGFISARPERILHRQTTNTPQFLGLQKQTGLWKESNFGKGIIIGVLDTG 149
Query: 121 INPDHPSFSDEGMPPPPAKWKGRCDF--STCNNKLIGARTFN-IEGNVKGTEPPIDVDGH 177
I P HPSFSD GM PPP KWKGRC+ + CNNKLIG RTFN + +KG E ID GH
Sbjct: 150 ITPGHPSFSDAGMSPPPPKWKGRCEINVTACNNKLIGVRTFNHVAKLIKGAEAAIDDFGH 209
Query: 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAA 237
GTH A TAAGAFV +AE LGNA+GTA+G+APYAHLAIY+VC C ESD+LA LDAA
Sbjct: 210 GTHTASTAAGAFVDHAEVLGNAEGTASGIAPYAHLAIYRVC---SKVCRESDILAALDAA 266
Query: 238 IEDGVDVLSISIGGGSV-PFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWI 296
+EDGVDVLSIS+G PFF+ IA+G+FAA+QKGIFVSCAAGN GP ++ N APWI
Sbjct: 267 VEDGVDVLSISLGSKRAKPFFDHGIAIGTFAAMQKGIFVSCAAGNDGPLPGSVINGAPWI 326
Query: 297 LTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGS 356
LTVGAS ++RSI ATAKLGN +EFDGES+FQP DF T LPL YAGMNGK E AFCGNGS
Sbjct: 327 LTVGASNINRSIAATAKLGNGQEFDGESIFQPSDFSPTLLPLAYAGMNGKQEDAFCGNGS 386
Query: 357 LSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHV 416
L+ ID +GKVVLCE+GGGI +I KG++VK AGGAAMILMNDE + FS+ D HVLP THV
Sbjct: 387 LNDIDFRGKVVLCEKGGGIEKIAKGKEVKRAGGAAMILMNDEKSGFSLNIDVHVLPTTHV 446
Query: 417 SNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGP 476
S DAGLKIK+YI STATP ATI+FKGT+IGNSLAP V SFS RGP+L SPGILKPDIIGP
Sbjct: 447 SYDAGLKIKAYIYSTATPTATILFKGTIIGNSLAPVVTSFSGRGPSLPSPGILKPDIIGP 506
Query: 477 GLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMT 536
GL+ILAAW PL+ NT KS FNIMSGTSM+CPHLSG+AALLKSSHP+WSPAAIKSA+MT
Sbjct: 507 GLNILAAWPFPLNNNTASKSTFNIMSGTSMSCPHLSGVAALLKSSHPHWSPAAIKSAIMT 566
Query: 537 TADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSD 596
+AD+++ + IV ETL+PAD+FA G+G+VNPSRANDPGLVYDI+PDDYIPYLCGLGY D
Sbjct: 567 SADIISHERKHIVGETLQPADVFATGSGYVNPSRANDPGLVYDIKPDDYIPYLCGLGYKD 626
Query: 597 KEVGILVHRPV----------AQLNYPSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVAP 646
EV I+ R + +LNYPSFSV L QTFTRTVTNVG+ SSY V V AP
Sbjct: 627 TEVEIIAGRTIKCSETSSIREGELNYPSFSVVLDSPQTFTRTVTNVGEANSSYVVTVSAP 686
Query: 647 QGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISVR 706
GV V V+P+KLYFS+ NQK TYSVTF+R + ++ QG++ WVSAK++VRSPIS+
Sbjct: 687 DGVDVKVQPNKLYFSEANQKETYSVTFSRIELDDETVKYVQGFLQWVSAKHTVRSPISIS 746
Query: 707 L 707
Sbjct: 747 F 747
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 708 | ||||||
| UNIPROTKB|Q7XPR8 | 760 | OSJNBa0065O17.13 "Os04g0559000 | 0.850 | 0.792 | 0.538 | 1.4e-172 | |
| UNIPROTKB|Q8H047 | 754 | OJ1263H11.8 "Subtilisin N-term | 0.977 | 0.917 | 0.495 | 3e-172 | |
| UNIPROTKB|Q8RVC2 | 759 | OSJNBb0005J14.3 "Putative seri | 0.980 | 0.914 | 0.501 | 3e-172 | |
| UNIPROTKB|Q6ESH8 | 791 | P0461B08.17 "Subtilisin-like s | 0.933 | 0.835 | 0.457 | 1.8e-151 | |
| UNIPROTKB|Q7XPR9 | 793 | OSJNBa0065O17.12 "Os04g0558900 | 0.975 | 0.871 | 0.439 | 1.4e-149 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.966 | 0.907 | 0.428 | 2.1e-139 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.796 | 0.723 | 0.427 | 3.5e-139 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.843 | 0.770 | 0.451 | 7.2e-139 | |
| UNIPROTKB|Q0D3H9 | 781 | Os07g0685900 "cDNA clone:001-1 | 0.959 | 0.869 | 0.432 | 8.3e-138 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.920 | 0.852 | 0.406 | 4.5e-137 |
| UNIPROTKB|Q7XPR8 OSJNBa0065O17.13 "Os04g0559000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1677 (595.4 bits), Expect = 1.4e-172, P = 1.4e-172
Identities = 348/646 (53%), Positives = 438/646 (67%)
Query: 5 TYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEE 64
T+IV VQ E A ++ + W+++FLP E R ++Y +V SGFAA+LT +E
Sbjct: 31 TFIVHVQPQESHVAATADDRKEWYKTFLP---EDG----RLVHAYHHVASGFAARLTRQE 83
Query: 65 VQDMKKKNGFVSARPERKVRLQTTHSPSFLGLH-----QGMGVWKESNFG-----KGVII 114
+ + GFVSA P++ LQTTH+P FLGL QG W S+ G GVI+
Sbjct: 84 LDAVSAMPGFVSAVPDQTHTLQTTHTPQFLGLSAPPPPQGKR-WSSSSHGGSGAGAGVIV 142
Query: 115 GILDGGINPDHPSFSDEGMPPPPAKWKGRCDF---STCNNKLIGARTF-----NIEGNVK 166
G++D G+ PDHPSFSD GMPPPPAKWKG CDF S CNNKLIGARTF N +
Sbjct: 143 GVIDTGVFPDHPSFSDAGMPPPPAKWKGHCDFNGGSVCNNKLIGARTFIANATNSSSSYG 202
Query: 167 GTEPPIDVDXXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCT 226
PP+D V A LG G AAG+AP+AH+A+YKVC + C
Sbjct: 203 ERLPPVDDVGHGTHTASTAAGAAVPGAHVLGQGLGVAAGIAPHAHVAVYKVC--PNESCA 260
Query: 227 ESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN 286
SD+LAG+DAAI DG DV+SISIGG SVPF + +AVG+F A++KG+FVS AAGN+GP
Sbjct: 261 ISDILAGVDAAIADGCDVISISIGGPSVPFHENPVAVGTFGAMEKGVFVSMAAGNAGPNV 320
Query: 287 STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGK 346
S++ N+APW+LTV AST+DRSI T +LGN FDGES++QP D P T PLVYAG +GK
Sbjct: 321 SSVINDAPWMLTVAASTMDRSIRTTVRLGNGLYFDGESLYQPNDSPSTFYPLVYAGASGK 380
Query: 347 PESAFCGNGSLSGIDVKGKVVLCERGGG--IARIFKGEQVKNAGGAAMILMNDEPNAFSV 404
P + FCGNGSL G DV+GK+V+CE GGG I RI KG V++AGGA MIL N P ++
Sbjct: 381 PSAEFCGNGSLDGFDVRGKIVVCEFGGGPNITRIIKGAVVQSAGGAGMILPNHFPEGYTT 440
Query: 405 IADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLA 464
+A+ HVLPA+HV AGL IK+YINSTA P+A I+ +GTV+G + AP + FSSRGP++
Sbjct: 441 LAEAHVLPASHVDYVAGLAIKAYINSTANPVAQILPRGTVLGTTPAPAMAFFSSRGPSVQ 500
Query: 465 SPGILKPDIIGPGLSILAAW-FE--PLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS 521
+PGILKPDI GPG+++LAAW F+ P P FNI+SGTSM+ PHLSG+AA +KS
Sbjct: 501 NPGILKPDITGPGVNVLAAWPFQVGPSSAQVFPGPTFNIISGTSMSTPHLSGVAAFIKSR 560
Query: 522 HPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQ 581
HP+WSPAAIKSA+MTTAD+ + +G +I+DE PA+ FA GAGHVNP RA DPGLVYDI
Sbjct: 561 HPHWSPAAIKSAIMTTADITDRSGNQILDEQRAPANFFATGAGHVNPERAADPGLVYDIA 620
Query: 582 PDDYIPYLCGLGYSDKEVGILVHRPVA----------QLNYPSFSV 617
P DY+ YLCGL Y+ +EV ++ RPV QLNYPS SV
Sbjct: 621 PCDYVGYLCGL-YTSQEVSVIARRPVNCSAVAAIPEHQLNYPSISV 665
|
|
| UNIPROTKB|Q8H047 OJ1263H11.8 "Subtilisin N-terminal Region family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
Identities = 360/727 (49%), Positives = 460/727 (63%)
Query: 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESS--DVQQRPFYSYKNVISGFAAKLT 61
+ Y+V + E +A+S VE WHRSFLP + + D R YSY +V+SGFAA+LT
Sbjct: 31 KNYVVHLDPREDGGVADS--VELWHRSFLPEATPEAAGDDGPRIIYSYSHVLSGFAAQLT 88
Query: 62 EEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGM-GVWKESNFGKGVIIGILDGG 120
++E + M+KK G + PE + L TTHSP FLGLH G G W S FG+GV+IG+LD G
Sbjct: 89 DDEAEAMRKKEGCIRLYPEEFLPLATTHSPGFLGLHLGNDGFWSRSGFGRGVVIGLLDTG 148
Query: 121 INPDHPSFSDEGMPPPPAKWKGRCDFST-----CNNKLIGARTFNIEGNVKGTEPPIDVD 175
I P HPSF D GMPPPP KWKG C+F CNNK+IGAR F V T PP+D
Sbjct: 149 ILPSHPSFGDAGMPPPPKKWKGTCEFKAISGGGCNNKIIGARAFG-SAAVNATAPPVDDA 207
Query: 176 XXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLD 235
FV+NA+ GNA GTA+GMAP+AHLAIYKVC C+ D++AGLD
Sbjct: 208 GHGTHTASTAAGNFVENADVRGNAHGTASGMAPHAHLAIYKVCTRSR--CSIMDIIAGLD 265
Query: 236 AAIEDGVDVLSISIGGG-SVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAP 294
AA++DGVDVLS SIG PF D +A+ +F A++ GIFVS AAGN GP +T+ N AP
Sbjct: 266 AAVKDGVDVLSFSIGASPGAPFNYDLVAIATFKAMEHGIFVSSAAGNDGPVAATVGNGAP 325
Query: 295 WILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ-TPLPLVYAGMNGKPESAFCG 353
W+LTV A T+DR+I T LGN + FDGES++QP++ LPLV+ G+NG +S C
Sbjct: 326 WMLTVAAGTMDRAIRTTVTLGNGQVFDGESLYQPRNNTAGRQLPLVFPGLNGDSDSRDCS 385
Query: 354 NGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413
+L +V GKVVLCE + + +G+ V GGA MILMN ++ AD HVLPA
Sbjct: 386 --TLVEEEVSGKVVLCESRSIVEHVEQGQTVSAYGGAGMILMNKPVEGYTTFADAHVLPA 443
Query: 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI 473
+HVS AG KI SYI ST P A++ FKGTV+G+S AP+V FSSRGPN ASPG+LKPDI
Sbjct: 444 SHVSYAAGSKILSYIKSTPKPTASVTFKGTVMGSSPAPSVAFFSSRGPNKASPGVLKPDI 503
Query: 474 IGPGLSILAAWFEPLDFNT---NPKSI-FNIMSGTSMACPHLSGIAALLKSSHPYWSPAA 529
GPG++ILAAW P + +T + S+ F + SGTSM+ PHLSGIAA++KS HP WSPAA
Sbjct: 504 TGPGMNILAAW-APGEMHTEFADGVSLSFFMESGTSMSTPHLSGIAAIIKSLHPTWSPAA 562
Query: 530 IKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYL 589
IKSA+MT++D+ + +G I DE R A + +GAG+VNPSRA DPGLVYD+ +DYI YL
Sbjct: 563 IKSAIMTSSDVADHDGVPIKDEQYRSASFYTMGAGYVNPSRAVDPGLVYDLHTNDYIAYL 622
Query: 590 CGLGYSDKEVGILVHRPV----------AQLNYPSFSVTL-GPAQTFTRTVTNVGQVYSS 638
CGLG D V + HR V A+LNYPS V L T R VTNVG+ S
Sbjct: 623 CGLGIGDDGVKEITHRRVSCAKLKAITEAELNYPSLVVKLLSQPITVHRIVTNVGKANSV 682
Query: 639 YAXXXXXXXXXXXXXKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYS 698
Y P L FS+ +K +++VT +G +G +G + WVS ++
Sbjct: 683 YTAVVDMPKNVAVTVHPPLLRFSRAYEKQSFTVTVRWAGQPAVAG--VEGNLKWVSDEHV 740
Query: 699 VRSPISV 705
VRSPI +
Sbjct: 741 VRSPIVI 747
|
|
| UNIPROTKB|Q8RVC2 OSJNBb0005J14.3 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
Identities = 367/732 (50%), Positives = 458/732 (62%)
Query: 4 QTYIVSVQ-QPEGSDLAESEYVENWHRSFLPY--SLES----SDVQQRPFYSYKNVISGF 56
+ YIV ++ + E + A VE WHRSFLP L+S +D R YSY +V +GF
Sbjct: 31 KNYIVHLEPRDEAAAAAGDASVEEWHRSFLPQVAKLDSDSDGADGGPRIVYSYSDVFTGF 90
Query: 57 AAKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGM-GVWKESNFGKGVIIG 115
AA+LT+EE + ++ G + PE + L TT SP FLGLH G W S FG+GV+IG
Sbjct: 91 AARLTDEEAEAVRATAGCLRLYPEEFLPLATTRSPGFLGLHLGNEAFWSHSGFGRGVVIG 150
Query: 116 ILDGGINPDHPSFSDEGMPPPPAKWKGRCDFST-----CNNKLIGARTFNIEGNVKGTEP 170
ILD GI P HPSF D+G+ PPP WKG C+F CNNK+IGAR F V + P
Sbjct: 151 ILDTGILPSHPSFGDDGLQPPPKNWKGTCEFKAIAGGGCNNKIIGARAFG-SAAVNSSAP 209
Query: 171 PIDVDXXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDL 230
P+D FV+NA GNA GTA+GMAP+AHLAIYKVC C+ D+
Sbjct: 210 PVDDAGHGTHTASTAAGNFVENANVRGNADGTASGMAPHAHLAIYKVCTRSR--CSIMDI 267
Query: 231 LAGLDAAIEDGVDVLSISIGGGSVPFFN-DSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI 289
+AGLDAA++DGVDVLS SIG S FN D IA+ F A+++GI VSCAAGNSGP T+
Sbjct: 268 IAGLDAAVKDGVDVLSFSIGASSGTQFNYDPIAIAGFKAMERGIVVSCAAGNSGPDPGTV 327
Query: 290 SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQP-KDFPQTPLPLVYAGMNGKPE 348
N APW+LTV A T+DR+I T +LGN +EFDGES+FQP + PLPLVY G +G
Sbjct: 328 GNGAPWMLTVAAGTMDRAIRTTVRLGNGDEFDGESLFQPGNNSAANPLPLVYPGADGSDT 387
Query: 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADP 408
S C L +V GKVVLCE G RI G+ V GGA +I+MN ++ AD
Sbjct: 388 SRDCS--VLRDAEVTGKVVLCESRGLNGRIEAGQTVAAYGGAGIIVMNRAAEGYTTFADA 445
Query: 409 HVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGI 468
HVLPA+HVS DAG KI +Y+NST P A+I FKGTVIG+S +P V FSSRGP+ ASPGI
Sbjct: 446 HVLPASHVSFDAGTKIAAYVNSTDNPTASIAFKGTVIGSSPSPAVTFFSSRGPSKASPGI 505
Query: 469 LKPDIIGPGLSILAAWFEP---LDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYW 525
LKPDI GPG++ILAAW +F+ F + SGTSM+ PHLSGIAALLKS HP W
Sbjct: 506 LKPDITGPGMNILAAWAPSESHTEFSDGVGLSFFVESGTSMSTPHLSGIAALLKSLHPDW 565
Query: 526 SPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDY 585
SPAAIKSA+MTT+D ++ G I DE R A +A+GAG+VNP+ A DPGLVYD+ DDY
Sbjct: 566 SPAAIKSAIMTTSDAVDRTGVPIKDEQYRHATFYAMGAGYVNPALAFDPGLVYDLHADDY 625
Query: 586 IPYLCGLGYSDKEVGILVHRPV----------AQLNYPSFSVTLGPAQTFT--RTVTNVG 633
IPYLCGLG D V + HRPV A+LNYPS V L AQ T RTVTNVG
Sbjct: 626 IPYLCGLGIGDDGVKEIAHRPVTCSDVKTITEAELNYPSLVVNL-LAQPITVNRTVTNVG 684
Query: 634 QVYSSYAXXXXXXXXXXXXXKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWV 693
+ S Y +P L F+++ + +++VT +G +G A+G + WV
Sbjct: 685 KPSSVYTAVVDMPKDVSVIVQPPMLRFTELKEMQSFTVTVRWAGQPNVAG--AEGNLKWV 742
Query: 694 SAKYSVRSPISV 705
S ++ VRSPI +
Sbjct: 743 SDEHIVRSPIII 754
|
|
| UNIPROTKB|Q6ESH8 P0461B08.17 "Subtilisin-like serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1478 (525.3 bits), Expect = 1.8e-151, P = 1.8e-151
Identities = 320/700 (45%), Positives = 426/700 (60%)
Query: 42 QQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGL----- 96
+ R YSY+NV++GF A++T EEV +M KK+ FV A PE+ +L TT++P +GL
Sbjct: 83 ETRLIYSYRNVVNGFCARVTREEVYEMAKKDWFVKAIPEKTYKLMTTYTPKMVGLTGAPA 142
Query: 97 -HQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF--STCNNKL 153
+ G G+W SN G+G+IIG+LD GI HPSF GM PPPA+WKGRCDF S CNNKL
Sbjct: 143 AYHG-GLWNRSNMGEGMIIGVLDDGIAAGHPSFDAAGMGPPPARWKGRCDFNSSVCNNKL 201
Query: 154 IGARTF--NIEGNVKGTEPPI-DVDXXXXXXXXXXXXX--FVKNAESLGNAKGTAAGMAP 208
IGAR+F + + +G + P+ V FV A +GN GTAAGMAP
Sbjct: 202 IGARSFFESAKWKWRGVDDPVLPVYELAHGTHTSSTAGGNFVPGANVMGNGFGTAAGMAP 261
Query: 209 YAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDSIAVGSFA 267
AHLA+Y+VC D C D+LA +D A+++GVDVLSIS+G F D +A+G++
Sbjct: 262 RAHLALYQVC-SEDRGCDRDDILAAMDDAVDEGVDVLSISLGDDEAGDFAGDPVALGAYT 320
Query: 268 AIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQ 327
AI +G+FVS +AGN+GP T+SNEAPW+LTV AST R VAT KLG EFDGE+++Q
Sbjct: 321 AIMRGVFVSSSAGNNGPNPLTVSNEAPWLLTVAASTTGRKFVATVKLGTGVEFDGEALYQ 380
Query: 328 PKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNA 387
P +FP T PL+ A G C + L V GK+V+C +GG + + KG + +A
Sbjct: 381 PPNFPSTQWPLI-ADTRG---DGTCSDEHLMKEHVAGKLVVCNQGGNLTGLRKGSYLHDA 436
Query: 388 GGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGN 447
G A M+L+ E V H+LP + +G ++K+Y+ ST +P A +I+KGTV G+
Sbjct: 437 GAAGMVLIGPEFMGSMVQPKSHILPVAQIVYLSGEELKAYMKSTKSPTAALIYKGTVFGD 496
Query: 448 SLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSI---FNIMSGT 504
P V FSSRGP+ + GILKPDI GPG++I+A T P + F+IMSGT
Sbjct: 497 RKTPEVAPFSSRGPSRQNQGILKPDITGPGVNIIAGVPVTSGLATPPNPLAAKFDIMSGT 556
Query: 505 SMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAG 564
SMA PHLSGIAAL+K +HP WSPAAIKSA+MTTAD L+ I D+ A++F +GAG
Sbjct: 557 SMAAPHLSGIAALIKKAHPKWSPAAIKSAMMTTADTLDRRRRPITDQKGNNANMFGLGAG 616
Query: 565 HVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHR---------PVAQ---LNY 612
+NP++A +PGLVYD+ DY+P+LCGLGYSD EV ++H P + LNY
Sbjct: 617 FINPTKAMNPGLVYDLTAQDYVPFLCGLGYSDHEVSSIIHPAPSVSCKQLPAVEQKDLNY 676
Query: 613 PSFSVTLG--P-AQTFTRTVTNVG-QVYSSYAXXXXXXXXXXXXXKPSKLYFSKVNQKAT 668
PS +V L P + +R VTNVG + + YA P L F KVNQ
Sbjct: 677 PSITVFLDREPYVVSVSRAVTNVGPRGKAVYAAKVDMPATVLVTVTPDTLRFKKVNQVRK 736
Query: 669 YSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISVRLQ 708
++VTF + G G A+G + WVS + VRSPI V Q
Sbjct: 737 FTVTFRGANGGPMKGGVAEGQLRWVSPDHVVRSPIVVSAQ 776
|
|
| UNIPROTKB|Q7XPR9 OSJNBa0065O17.12 "Os04g0558900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1460 (519.0 bits), Expect = 1.4e-149, P = 1.4e-149
Identities = 325/739 (43%), Positives = 439/739 (59%)
Query: 6 YIVSVQQPEGSDLAESEYVENWHRSFLPY--SLESSDVQQRP------FYSYKNVISGFA 57
Y+V V++P D + V +WH S + + +++ P YSY+NV++GFA
Sbjct: 47 YLVIVRKPYAYDTNLYKNVSSWHASLVASVCDMAKEALERDPSSVSRLIYSYRNVVNGFA 106
Query: 58 AKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGM---GVWKESNFGKGVII 114
A+LT EEV++M K + F+ A PE+ +LQTTH+P LGL G GVW SN G+G+II
Sbjct: 107 ARLTPEEVEEMSKNDWFIRADPEKTYQLQTTHTPQLLGLMGGARRGGVWNTSNMGEGIII 166
Query: 115 GILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS--TCNNKLIGARTF--NIEGNVKGT-E 169
GILD GI HPSF GM PPPAKW GRCDF+ CNNKLIGAR++ + + KG +
Sbjct: 167 GILDDGIYAGHPSFDGAGMKPPPAKWSGRCDFNKTVCNNKLIGARSYFESAKWKWKGLRD 226
Query: 170 P--PIDVDXXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTE 227
P PI+ FV A G A GTA GMAP AH+A Y+VC+ + C
Sbjct: 227 PVLPINEGQHGTHTSSTAAGSFVPGANVSGYAVGTAGGMAPRAHIAFYQVCYV-EKGCDR 285
Query: 228 SDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN 286
D+LA +D A+EDGVD+LS+S+G F +D +++G ++A G+ VS A GN+GP
Sbjct: 286 DDILAAVDDALEDGVDILSLSLGDEQAGDFSDDPVSLGGYSAAMHGVLVSAAGGNTGPGP 345
Query: 287 STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGK 346
ST+ NEAPW++TVGA T DR VAT KLG+ DGES+ +PKDF PLV+ +G
Sbjct: 346 STVVNEAPWVITVGAGTTDRRFVATVKLGSGVSLDGESLSEPKDFGAEMRPLVHDVGDG- 404
Query: 347 PESAFCGNGS-LSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI 405
C S L ++V GK+++C+ GG ++ + K + V +G A MI++ + ++
Sbjct: 405 ----MCTTESVLRAMNVTGKIIICDAGGDVS-VAKAKLVLRSGAAGMIVIAPQVYGSVIV 459
Query: 406 ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLAS 465
PHVLP + G KIK+YI ST +P A IFKGTV + +P FSSRGPN S
Sbjct: 460 PRPHVLPTVQMPFMIGQKIKAYIRSTPSPTANFIFKGTVF-KAKSPVAAPFSSRGPNRRS 518
Query: 466 PGILKPDIIGPGLSILAAWFEPLDFNTNPKSI---FNIMSGTSMACPHLSGIAALLKSSH 522
GILKPDIIGPG++ILA + D + + F+I SGTSMA PH+SG+AAL+K++H
Sbjct: 519 RGILKPDIIGPGVNILAGVPKIEDLALGAEEVMPKFDIKSGTSMAAPHISGVAALIKNAH 578
Query: 523 PYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQP 582
P WSPAAIKSA+MTTAD + + I D PA +AIGAG+VN +A DPGLVY++
Sbjct: 579 PTWSPAAIKSAMMTTADYTDNLRKPITDVDGAPATYYAIGAGYVNARKAIDPGLVYNLSS 638
Query: 583 DDYIPYLCGLGYSDKEVGILVHR-PVAQ-----------LNYPSFSVTLG--PAQ-TFTR 627
DYIPYLCGLGY D++V ++H P + LNYPS + L P + + R
Sbjct: 639 LDYIPYLCGLGYKDQKVNSIIHPGPAVECAKMPKVDQKDLNYPSITAVLDMEPYEVSINR 698
Query: 628 TVTNVGQVYSSYAXXXXXXXXXXXXXKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQ 687
+ TNVG S+YA P+KL F +N+ Y+VT ++ SG +
Sbjct: 699 SATNVGAATSTYAVEVDVPATLAVEVNPAKLEFRALNEVLNYTVT-VKTASGKAPASTIE 757
Query: 688 GYITWVSAK-YSVRSPISV 705
G + WVS K Y VRSPI V
Sbjct: 758 GQLKWVSGKKYVVRSPILV 776
|
|
| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1364 (485.2 bits), Expect = 2.1e-139, P = 2.1e-139
Identities = 316/738 (42%), Positives = 427/738 (57%)
Query: 4 QTYIVSVQQPEGSDLAESEYVEN-WHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTE 62
+TYI+ V SD ES + W+ S L + ESS + Y+Y GF+A L
Sbjct: 28 KTYIIRVNH---SDKPESFLTHHDWYTSQL--NSESSLL-----YTYTTSFHGFSAYLDS 77
Query: 63 EEVQDM-KKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGI 121
E + N + + L TT +P FLGL+ GV + GVIIG+LD G+
Sbjct: 78 TEADSLLSSSNSILDIFEDPLYTLHTTRTPEFLGLNSEFGVHDLGSSSNGVIIGVLDTGV 137
Query: 122 NPDHPSFSDEGMPPPPAKWKGRC----DFST--CNNKLIGARTFN-----IEG----NVK 166
P+ SF D MP P+KWKG C DF + CN KLIGAR+F+ G + +
Sbjct: 138 WPESRSFDDTDMPEIPSKWKGECESGSDFDSKLCNKKLIGARSFSKGFQMASGGGFSSKR 197
Query: 167 GTEPPIDVDXXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCT 226
+ P DVD V+NA LG A GTA GMA A +A YKVC+ C
Sbjct: 198 ESVSPRDVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMATRARVATYKVCWS--TGCF 255
Query: 227 ESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN 286
SD+LA +D AI DGVDVLS+S+GGGS P++ D+IA+G+F+A+++G+FVSC+AGNSGP
Sbjct: 256 GSDILAAMDRAILDGVDVLSLSLGGGSAPYYRDTIAIGAFSAMERGVFVSCSAGNSGPTR 315
Query: 287 STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGK 346
++++N APW++TVGA TLDR A A LGN + G S++ PL LVY N
Sbjct: 316 ASVANVAPWVMTVGAGTLDRDFPAFANLGNGKRLTGVSLYSGVGMGTKPLELVYNKGNSS 375
Query: 347 PESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406
S C GSL V+GK+V+C+RG AR+ KG V++AGG MI+ N + ++A
Sbjct: 376 -SSNLCLPGSLDSSIVRGKIVVCDRGVN-ARVEKGAVVRDAGGLGMIMANTAASGEELVA 433
Query: 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASP 466
D H+LPA V G ++ Y+ S + P A ++FKGTV+ +P V +FSSRGPN +P
Sbjct: 434 DSHLLPAIAVGKKTGDLLREYVKSDSKPTALLVFKGTVLDVKPSPVVAAFSSRGPNTVTP 493
Query: 467 GILKPDIIGPGLSILAAWFE---PLDFNTNPKSI-FNIMSGTSMACPHLSGIAALLKSSH 522
ILKPD+IGPG++ILA W + P + + + FNIMSGTSM+CPH+SG+A LLK++H
Sbjct: 494 EILKPDVIGPGVNILAGWSDAIGPTGLDKDSRRTQFNIMSGTSMSCPHISGLAGLLKAAH 553
Query: 523 PYWSPAAIKSALMTTADLL-NMNG--ERIVDETLRPADIFAIGAGHVNPSRANDPGLVYD 579
P WSP+AIKSALMTTA +L N N D +L ++ +A G+GHV+P +A PGLVYD
Sbjct: 554 PEWSPSAIKSALMTTAYVLDNTNAPLHDAADNSL--SNPYAHGSGHVDPQKALSPGLVYD 611
Query: 580 IQPDDYIPYLCGLGYSDKEVGILVHRPVA----------QLNYPSFSVTLGPAQT--FTR 627
I ++YI +LC L Y+ + +V RP QLNYPSFSV G + +TR
Sbjct: 612 ISTEEYIRFLCSLDYTVDHIVAIVKRPSVNCSKKFSDPGQLNYPSFSVLFGGKRVVRYTR 671
Query: 628 TVTNVGQVYSSYAXXXXXXXXXXXXXKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQ 687
VTNVG S Y KPSKL F V +K Y+VTF S G + A+
Sbjct: 672 EVTNVGAASSVYKVTVNGAPSVGISVKPSKLSFKSVGEKKRYTVTFV-SKKGVSMTNKAE 730
Query: 688 -GYITWVSAKYSVRSPIS 704
G ITW + ++ VRSP++
Sbjct: 731 FGSITWSNPQHEVRSPVA 748
|
|
| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 3.5e-139, Sum P(2) = 3.5e-139
Identities = 253/592 (42%), Positives = 353/592 (59%)
Query: 35 SLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFL 94
S E R Y+Y+ G AA+LT+EE + +++++G V+ PE + L TT SP+FL
Sbjct: 69 SQEEEGNNNRILYTYQTAFHGLAAQLTQEEAERLEEEDGVVAVIPETRYELHTTRSPTFL 128
Query: 95 GLH--QGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS----- 147
GL + VW E V++G+LD GI P+ SF+D GM P PA W+G C+
Sbjct: 129 GLERQESERVWAERVTDHDVVVGVLDTGIWPESESFNDTGMSPVPATWRGACETGKRFLK 188
Query: 148 -TCNNKLIGARTF--NIE---GNVKGT---EPPIDVDXXXXXXXXXXXXXFVKNAESLGN 198
CN K++GAR F E G + + P D D VK A G
Sbjct: 189 RNCNRKIVGARVFYRGYEAATGKIDEELEYKSPRDRDGHGTHTAATVAGSPVKGANLFGF 248
Query: 199 AKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN 258
A GTA GMA A +A YKVC+ G C SD+L+ +D A+ DGV VLSIS+GGG +
Sbjct: 249 AYGTARGMAQKARVAAYKVCWVGG--CFSSDILSAVDQAVADGVQVLSISLGGGVSTYSR 306
Query: 259 DSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNRE 318
DS+++ +F A++ G+FVSC+AGN GP +++N +PWI TVGAST+DR AT K+G
Sbjct: 307 DSLSIATFGAMEMGVFVSCSAGNGGPDPISLTNVSPWITTVGASTMDRDFPATVKIGTMR 366
Query: 319 EFDGESVFQPKD-FPQTP-LPLVYAGMNGK-PE-SAFCGNGSLSGIDVKGKVVLCERGGG 374
F G S+++ + P+ PLVY G N P+ ++FC +G+L V GK+V+C+RG
Sbjct: 367 TFKGVSLYKGRTVLPKNKQYPLVYLGRNASSPDPTSFCLDGALDRRHVAGKIVICDRGV- 425
Query: 375 IARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATP 434
R+ KG+ VK AGG M+L N N ++AD H+LPA V G IK Y ++
Sbjct: 426 TPRVQKGQVVKRAGGIGMVLTNTATNGEELVADSHMLPAVAVGEKEGKLIKQYAMTSKKA 485
Query: 435 MATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAW---FEPLDFN 491
A++ GT IG +P V +FSSRGPN S ILKPD++ PG++ILAAW P +
Sbjct: 486 TASLEILGTRIGIKPSPVVAAFSSRGPNFLSLEILKPDLLAPGVNILAAWTGDMAPSSLS 545
Query: 492 TNPKSI-FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVD 550
++P+ + FNI+SGTSM+CPH+SG+AAL+KS HP WSPAAIKSALMTTA + + + + D
Sbjct: 546 SDPRRVKFNILSGTSMSCPHVSGVAALIKSRHPDWSPAAIKSALMTTAYVHDNMFKPLTD 605
Query: 551 ET-LRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGI 601
+ P+ + GAGH++P RA DPGLVYDI P +Y +LC S ++ +
Sbjct: 606 ASGAAPSSPYDHGAGHIDPLRATDPGLVYDIGPQEYFEFLCTQDLSPSQLKV 657
|
|
| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 7.2e-139, Sum P(2) = 7.2e-139
Identities = 287/636 (45%), Positives = 382/636 (60%)
Query: 1 SNLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKL 60
SN TYIV V + + + +W+ S L SL SS ++Y V GF+A+L
Sbjct: 23 SNSLTYIVHVDHEAKPSIFPTHF--HWYTSSLA-SLTSSPPSI--IHTYDTVFHGFSARL 77
Query: 61 TEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQG--MGVWKESNFGKGVIIGILD 118
T ++ + +S PE+ L TT SP FLGL G+ +ES+FG ++IG++D
Sbjct: 78 TSQDASQLLDHPHVISVIPEQVRHLHTTRSPEFLGLRSTDKAGLLEESDFGSDLVIGVID 137
Query: 119 GGINPDHPSFSDEGMPPPPAKWKGRC----DF--STCNNKLIGARTF--NIEG-NVKGTE 169
G+ P+ PSF D G+ P P KWKG+C DF S CN KL+GAR F E N K E
Sbjct: 138 TGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGARFFCGGYEATNGKMNE 197
Query: 170 P-----PIDVDXXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD 224
P D D +V A +LG A G AAGMAP A LA YKVC+
Sbjct: 198 TTEFRSPRDSDGHGTHTASISAGRYVFPASTLGYAHGVAAGMAPKARLAAYKVCWNSG-- 255
Query: 225 CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGP 284
C +SD+LA D A+ DGVDV+S+S+GG VP++ D+IA+G+F AI +GIFVS +AGN GP
Sbjct: 256 CYDSDILAAFDTAVADGVDVISLSVGGVVVPYYLDAIAIGAFGAIDRGIFVSASAGNGGP 315
Query: 285 FNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQ-PKDFPQTPLPLVYAG- 342
T++N APW+ TVGA T+DR A KLGN + G SV+ P P PLVY G
Sbjct: 316 GALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKMISGVSVYGGPGLDPGRMYPLVYGGS 375
Query: 343 -MNGKP-ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPN 400
+ G S+ C GSL VKGK+VLC+RG +R KGE V+ GG MI+ N +
Sbjct: 376 LLGGDGYSSSLCLEGSLDPNLVKGKIVLCDRGIN-SRATKGEIVRKNGGLGMIIANGVFD 434
Query: 401 AFSVIADPHVLPATHVSNDAGLKIKSYIN------STATPMATIIFKGTVIGNSLAPTVV 454
++AD HVLPAT V G +I+ YI+ S+ P ATI+FKGT +G AP V
Sbjct: 435 GEGLVADCHVLPATSVGASGGDEIRRYISESSKSRSSKHPTATIVFKGTRLGIRPAPVVA 494
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD----FNTNPKSIFNIMSGTSMACPH 510
SFS+RGPN +P ILKPD+I PGL+ILAAW + + + N ++ FNI+SGTSMACPH
Sbjct: 495 SFSARGPNPETPEILKPDVIAPGLNILAAWPDRIGPSGVTSDNRRTEFNILSGTSMACPH 554
Query: 511 LSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDE-TLRPADIFAIGAGHVNPS 569
+SG+AALLK++HP WSPAAI+SAL+TTA ++ +GE ++DE T + + G+GHV+P+
Sbjct: 555 VSGLAALLKAAHPDWSPAAIRSALITTAYTVDNSGEPMMDESTGNTSSVMDYGSGHVHPT 614
Query: 570 RANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHR 605
+A DPGLVYDI DYI +LC Y+ + + R
Sbjct: 615 KAMDPGLVYDITSYDYINFLCNSNYTRTNIVTITRR 650
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| UNIPROTKB|Q0D3H9 Os07g0685900 "cDNA clone:001-131-E09, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 315/729 (43%), Positives = 428/729 (58%)
Query: 5 TYIVSVQQPE--GSDLAESEYVENWHRSFLPYS-LESSDVQQRPFYSYKNVISGFAAKLT 61
TYIV V+ P G E ++ WH SFLP S L SD + R +SY +SGFAA+LT
Sbjct: 46 TYIVFVEPPPPLGHGDGEDDHCR-WHESFLPLSELAGSDDEPRLVHSYTEAVSGFAARLT 104
Query: 62 EEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGI 121
E+ + KK GFV A P+R ++L TTH+P FLGL + G+W++S +GKGVI+G+LD GI
Sbjct: 105 GGELDAVSKKPGFVRAIPDRTLQLMTTHTPEFLGLRKDAGLWRDSGYGKGVIVGVLDTGI 164
Query: 122 NPDHPSFSDEGMPPPPAKWKGRC-DFST-CNNKLIGARTFNIEGNVKGTEPPIDVDXXXX 179
+ HPSF D G+PPPPA+WKG C D + CNNKLIG ++F + G D
Sbjct: 165 DSSHPSFDDRGVPPPPARWKGSCRDTAARCNNKLIGVKSF-----IPGDNDTSDGVGHGT 219
Query: 180 XXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAI 238
FV A G GT AG+AP AH+A+Y+VC V+ CTES LL G+D AI
Sbjct: 220 HTASTAAGNFVDGAAVNGLGVGTVAGIAPGAHIAMYRVC---TVEGCTESALLGGIDEAI 276
Query: 239 EDGVDVLSISIGGG-SVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWIL 297
+DGVDVLSIS+G + + D +A+G+F+A+ KGI V CAAGN+GP +T+SNEAPW++
Sbjct: 277 KDGVDVLSISLGSSFAADYDKDPLAIGAFSAVSKGIVVVCAAGNNGPAFATLSNEAPWMV 336
Query: 298 TVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSL 357
TV AS++DR A +LG+ DGE++ Q + PL Y+ K ++ C
Sbjct: 337 TVAASSVDRRFSAPTRLGDGRVIDGEALDQASNSSGKAYPLSYS----KEQAGLCEIAD- 391
Query: 358 SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVS 417
+G D+KGK+VLC+ G + + +K G A ++L+N + ++ I + V+
Sbjct: 392 TG-DIKGKIVLCKLEGSPPTVV--DNIKRGGAAGVVLINTDLLGYTTILRDYGSDVVQVT 448
Query: 418 NDAGLKIKSYINSTATPMATIIFKG-TVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGP 476
G ++ Y S P+ATI FK TV+G APT+ +FSSRGP+ + GILKPDI+ P
Sbjct: 449 VADGARMIEYAGSR-NPVATITFKNRTVLGVRPAPTLAAFSSRGPSFLNVGILKPDIMAP 507
Query: 477 GLSILAAWFEPL---DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSA 533
GL+ILAAW + D P S FN++SGTSMA PH+SG+AAL+KS HP WSPAAIKSA
Sbjct: 508 GLNILAAWPSSVARTDAAAAPPS-FNVISGTSMATPHVSGVAALVKSVHPDWSPAAIKSA 566
Query: 534 LMTTADLLNMNGERIVDETLRPADIFA---IGAGHVNPSRANDPGLVYDIQPDDYIPYLC 590
++TT+D ++ G I+DE +F GAGHVNP+RA DPGLVYDI +Y +LC
Sbjct: 567 ILTTSDEVDNTGGPILDEQHNKTMLFGPFNTGAGHVNPTRAADPGLVYDIGVAEYAGFLC 626
Query: 591 GLGYSDKEVGILVHR---------P-VAQ--LNYPSFSVTLGPAQ-TFTRTVTNVGQVYS 637
L + + I+V P V Q LNYPS +V L T RTVTNVG S
Sbjct: 627 TL-VGEYVLPIIVRNSSLQSCRDLPRVGQSHLNYPSITVELEKTPFTVNRTVTNVGPAES 685
Query: 638 SYAXXXXXXXXXXX--XXKPSKLYFSKVNQKATYSVTFT-RSGSGYTSGQFAQGYITWVS 694
+Y P L FSK +K T++VT + R + +G + WVS
Sbjct: 686 TYTANVTLAAETSLKLSVSPETLVFSKAGEKKTFAVTVSGRFTKAAQAVAVLEGSLRWVS 745
Query: 695 AKYSVRSPI 703
++ VRSP+
Sbjct: 746 PEHVVRSPV 754
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| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 282/693 (40%), Positives = 395/693 (56%)
Query: 5 TYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEE 64
TYIV + + +EY ++ H + SL S + Y+Y V+ GF+A+LT E
Sbjct: 25 TYIVHMAK----SAMPAEYGDD-HGEWYGASLRSVSGAGKMLYAYDTVLHGFSARLTARE 79
Query: 65 VQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPD 124
+DM +G ++ PE + L TT +P FLG+ G++ +S V++G+LD G+ P+
Sbjct: 80 ARDMAAMDGVLAVNPEARYELHTTRTPEFLGIAGNDGLFPQSGTAGDVVVGVLDTGVWPE 139
Query: 125 HPSFSDEGMPPPPAKWKGRC------DFSTCNNKLIGARTFN--IEG------NVKGTEP 170
S+ D G+ P+ WKG C + S CN KL+GAR FN E + +
Sbjct: 140 SRSYDDAGLGEVPSWWKGECMAGTGFNSSACNRKLVGARFFNRGYEAAMGPMDTTRESRS 199
Query: 171 PIDVDXXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDL 230
P D D V A LG A GTA GMAP A +A+YKVC+ G C SD+
Sbjct: 200 PRDDDGHGTHTSSTAAGAAVSGASLLGFASGTARGMAPRARVAVYKVCWLGG--CFSSDI 257
Query: 231 LAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTIS 290
LAG+DAA+ DG VLS+S+GGG+ + DS+A+G+FAA+++ + VSC+AGN+GP ST+S
Sbjct: 258 LAGMDAAVADGCGVLSLSLGGGAADYARDSVAIGAFAAMEQNVLVSCSAGNAGPGTSTLS 317
Query: 291 NEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESA 350
N APWI TVGA TLDR A LGN + + G S++ K P TPLP+VYA N +A
Sbjct: 318 NVAPWITTVGAGTLDRDFPAYVSLGNGKNYTGVSLYAGKALPSTPLPIVYAA-NASNSTA 376
Query: 351 --FCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADP 408
C G+L+ V GK+V+C+RG AR+ KG V++AGGA M+L N N ++AD
Sbjct: 377 GNLCMPGTLTPEKVAGKIVVCDRGVS-ARVQKGFVVRDAGGAGMVLSNTATNGEELVADA 435
Query: 409 HVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGI 468
H+LPA V G IK+Y+ S +P ATI+ GT + +P V +FSSRGPN+ +P I
Sbjct: 436 HLLPAAGVGAKEGAAIKAYVASDPSPTATIVVAGTQVDVRPSPVVAAFSSRGPNMLTPEI 495
Query: 469 LKPDIIGPGLSILAAWFE---PLDFNTNPKSI-FNIMSGTSMACPHLSGIAALLKSSHPY 524
LKPDII PG++ILAAW P + + + FNI+SGTSM+CPH+SG+AALL+S+HP
Sbjct: 496 LKPDIIAPGVNILAAWTGKAGPTGIAADTRRVAFNIISGTSMSCPHVSGLAALLRSAHPE 555
Query: 525 WSPAAIKSALMTTADLLNMN-GER--IVDE-TLRPADIFAIGAGHVNPSRANDPGLVYDI 580
WSPAA++SALMTTA G+ ++D T PA F GAGHV+P+ A DPGLVYD+
Sbjct: 556 WSPAAVRSALMTTAYSTYAGAGDANPLLDAATGAPATPFDYGAGHVDPASAVDPGLVYDL 615
Query: 581 QPDDYIPYLCGLGYSDKEVGILVHRPVAQLNYPSFSVTLGPAQT-FTRTVTNVGQVYSSY 639
DY+ +LC L Y+ + VA+ S+ T G A + + + YS+
Sbjct: 616 GTADYVDFLCALNYTSTMIAA-----VARSK--SYGCTEGKAYSVYNLNYPSFAVAYSTA 668
Query: 640 AXXXXXXXXXXXXXKPSKLYFSKVNQKATYSVT 672
+ + + V TY V+
Sbjct: 669 SSQAAESSGAAATTVTHRRTLTNVGAAGTYKVS 701
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O64495 | SDD1_ARATH | 3, ., 4, ., 2, 1, ., - | 0.4636 | 0.9830 | 0.8980 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_III000968 | hypothetical protein (708 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 708 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-101 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-35 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-30 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 5e-30 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-26 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-25 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 1e-23 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-22 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 3e-22 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-20 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-20 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 4e-20 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-18 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 7e-18 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-17 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-14 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-13 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 3e-13 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-13 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 8e-13 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 9e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-12 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 1e-12 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-12 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 5e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 6e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-11 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 6e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 3e-10 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-10 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 4e-10 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 4e-10 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 8e-10 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 1e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-07 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 2e-07 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 1e-06 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 3e-06 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 3e-06 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 4e-06 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 5e-06 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 5e-06 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 7e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 8e-06 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 9e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 2e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 4e-05 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 6e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 7e-05 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-04 | |
| cd02121 | 220 | cd02121, PA_GCPII_like, PA_GCPII_like: Protease-as | 3e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 4e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 0.001 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 313 bits (804), Expect = e-101
Identities = 118/237 (49%), Positives = 145/237 (61%), Gaps = 16/237 (6%)
Query: 83 VRLQTTHSPSFLGLHQGMG--VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKW 140
+L TT SP FLGL G + +N G+G+IIG+LD GI P+HPSF+D G P P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 141 KGRCD------FSTCNNKLIGARTFN--IEGNVKGTEP-----PIDVDGHGTHVAGTAAG 187
G C +CNNKLIGAR F+ + P D DGHGTH A TAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 188 AFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSI 247
V NA G A GTA+G+AP A +A+YKVC+ C SD+LA +D AI DGVDV+S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG-CFGSDILAAIDQAIADGVDVISY 179
Query: 248 SIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTL 304
SIGGGS + D IA+ A++ GIFV+ +AGNSGP ST+ N APW+ TV ASTL
Sbjct: 180 SIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-35
Identities = 61/129 (47%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 311 TAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESA-FCGNGSLSGIDVKGKVVLC 369
LGN + G+S++ PLVY N A C GSL VKGK+VLC
Sbjct: 1 VVTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLC 57
Query: 370 ERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429
+RGG +R+ KG+ VK AGGA MIL ND + V+AD HVLPA HV + G I SYIN
Sbjct: 58 DRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYIN 117
Query: 430 STATPMATI 438
ST+ P ATI
Sbjct: 118 STSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 44/74 (59%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 467 GILKPDIIGPGLSILAAWFEPLDFNTNPKSI-FNIMSGTSMACPHLSGIAALLKSSHPYW 525
LKPDI PG+ ILAAW + + F +SGTSMA PH++G+AALLKS+HP W
Sbjct: 234 STLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDW 293
Query: 526 SPAAIKSALMTTAD 539
SPAAIKSALMTTA
Sbjct: 294 SPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-30
Identities = 73/198 (36%), Positives = 102/198 (51%), Gaps = 19/198 (9%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
GKGV + ++D GI+ HP G P K KG DF + + R +
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPND--KVKGGYDFVDDDYDPMDTRPYPSPLGDA-- 56
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D GHGTHVAG AG N ++G K G+AP A L YKV G T
Sbjct: 57 -SAGDATGHGTHVAGIIAG----NGVNVGTIK----GVAPKADLYAYKV-LGPGGSGTTD 106
Query: 229 DLLAGLDAAIEDGVDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS 287
++A ++ A++DG+DV+++S+G P D+IA+ + A++ G+ V AAGNSGP
Sbjct: 107 VIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINN--AVKAGVVVVAAAGNSGPAPY 164
Query: 288 TISN--EAPWILTVGAST 303
TI + AP +TVGAST
Sbjct: 165 TIGSPATAPSAITVGAST 182
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 52/124 (41%), Positives = 66/124 (53%), Gaps = 15/124 (12%)
Query: 448 SLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMA 507
+ A TV SSRGP S +KPDI+ PG+ I++ + + MSGTSMA
Sbjct: 187 AEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMSTA-------PGSGTGYARMSGTSMA 238
Query: 508 CPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567
PH++G AALLK +HP WSPA IK+ALM TA L D + GAG V+
Sbjct: 239 APHVAGAAALLKQAHPDWSPAQIKAALMNTAKPL-------YDSDGVVYPVSRQGAGRVD 291
Query: 568 PSRA 571
RA
Sbjct: 292 ALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 38/202 (18%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
GKG+ + +LD GI+ HP F ++ + V G
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDG-----RIIRFADFVNT------------------VNGR 37
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
P D +GHGTHVAG AG+ + G G+AP A+L KV +ES
Sbjct: 38 TTPYDDNGHGTHVAGIIAGSGRA-------SNGKYKGVAPGANLVGVKV-LDDSGSGSES 89
Query: 229 DLLAGLDAAIED----GVDVLSISIGGG-SVPFFNDSIAVGSFAAIQKGIFVSCAAGNSG 283
D++AG+D +E+ + V+++S+G + D + GI V AAGNSG
Sbjct: 90 DIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSG 149
Query: 284 PFNSTISN--EAPWILTVGAST 303
P TI++ +P ++TVGA
Sbjct: 150 PGPGTITSPGNSPKVITVGAVD 171
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 34/198 (17%)
Query: 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171
V + ++D G++PDHP G + + N G P
Sbjct: 1 VTVAVIDTGVDPDHPDL--------------------DGLFGGGDGGNDDDDNENGPTDP 40
Query: 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLL 231
D +GHGTHVAG A + G G+AP A L KV GD + SD+
Sbjct: 41 DDGNGHGTHVAGIIAAS---------ANNGGGVGVAPGAKLIPVKV-LDGDGSGSSSDIA 90
Query: 232 AGLDAAIED-GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTIS 290
A +D A D G DV+++S+GG P + +A + G+ V AAGN GP T
Sbjct: 91 AAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNI 150
Query: 291 NE---APWILTVGASTLD 305
+P ++ VGA D
Sbjct: 151 GYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 2e-22
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170
GV + +LD G++ DHP + A+W F+ + TE
Sbjct: 1 GVTVAVLDTGVDADHPDLAGR-----VAQW----------------ADFDENRRISATEV 39
Query: 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDL 230
D GHGTHV+GT G G AKG G+AP A L KV D + S +
Sbjct: 40 -FDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVL--DDGGGSLSQI 87
Query: 231 LAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTIS 290
+AG++ A+E DV+S+S+GG AV + + +FV +AGN G S
Sbjct: 88 IAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFVV-SAGNEGHGTSGSP 146
Query: 291 NEAPWILTVGA 301
A L+VGA
Sbjct: 147 GSAYAALSVGA 157
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 63/194 (32%), Positives = 87/194 (44%), Gaps = 42/194 (21%)
Query: 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170
GV + ++D GI+ HP + G NN
Sbjct: 1 GVKVAVIDTGIDSSHPDLKLNIV-------GGANFTGDDNN------------------D 35
Query: 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDL 230
D +GHGTHVAG A L N G G+AP A L KV D T SD+
Sbjct: 36 YQDGNGHGTHVAGIIAA--------LDNGVGVV-GVAPEADLYAVKV-LNDDGSGTYSDI 85
Query: 231 LAGLDAAIEDGVDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI 289
+AG++ AIE+G+D++++S+GG S P ++I A GI V AAGNSG +S+
Sbjct: 86 IAGIEWAIENGMDIINMSLGGPSDSPALREAIK----KAYAAGILVVAAAGNSGNGDSSY 141
Query: 290 SNEA--PWILTVGA 301
A P ++ VGA
Sbjct: 142 DYPAKYPSVIAVGA 155
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHL 511
+ FSSRGP G +KPD++ PG +I++ + S + MSGTSMA PH+
Sbjct: 179 GISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPHV 236
Query: 512 SGIAALLKSSHPYWSPAAIKSALMTTAD 539
SG ALL ++P +P +K L TA
Sbjct: 237 SGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 62/210 (29%), Positives = 86/210 (40%), Gaps = 52/210 (24%)
Query: 105 ESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGN 164
+S+ G GV + +LD GI H F GR I F
Sbjct: 20 DSSTGSGVDVYVLDTGIRTTHVEFG------------GR---------AIWGADFV---- 54
Query: 165 VKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD 224
G +P D +GHGTHVAGT G G+A A+L KV +
Sbjct: 55 --GGDPDSDCNGHGTHVAGTVG--------------GKTYGVAKKANLVAVKV-LDCNGS 97
Query: 225 CTESDLLAGLDAAIEDGVD-----VLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAA 279
T S ++AGL+ D V ++S+GGG+ + ++A AA+ G+ V AA
Sbjct: 98 GTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA----AAVNAGVVVVVAA 153
Query: 280 GNSGPFNSTISNE-APWILTVGASTLDRSI 308
GNS S AP +TVGA+ D +
Sbjct: 154 GNSNQDACNYSPASAPEAITVGATDSDDAR 183
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 4e-20
Identities = 50/216 (23%), Positives = 74/216 (34%), Gaps = 46/216 (21%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G GV +G++D GI+ HP F+ + ++ + N G
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAGR----------------------VSEASYYVAVNDAGY 39
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D D HGTHVAG A A G+AP A L + +++
Sbjct: 40 ASNGDGDSHGTHVAGVIAAARDGGG---------MHGVAPDATLYSARASASAGSTFSDA 90
Query: 229 DLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGS------------FAAIQKGIFVS 276
D+ A D GV +++ S GG + GS A G
Sbjct: 91 DIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFV 150
Query: 277 CAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATA 312
AAGN G N +++ A L L+ +A
Sbjct: 151 FAAGNDGQANPSLAAAA---LPYLEPELEGGWIAVV 183
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 58/205 (28%), Positives = 83/205 (40%), Gaps = 37/205 (18%)
Query: 113 IIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPI 172
+G+LD GI+ +HP S GR N ++ N P
Sbjct: 1 TVGVLDTGIDVNHPDLS------------GRYIGLAYRN------GYDFVDNDPDPTPDD 42
Query: 173 DVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLA 232
D +GHGTHVAG A + +G A A L KV G T+S+L
Sbjct: 43 DNNGHGTHVAGIIAAGDNNGSGGVGVAPN--------AKLESVKVLPGSGG--TDSELAG 92
Query: 233 GLDAAIE--DGVDVLSISIGGGSVPFFNDSIAVGSFA---AIQKGIFVSCAAGNSGPFNS 287
++ A E + + V+++S+G P + S A+ A A KG AAGN G +
Sbjct: 93 AIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYAD 152
Query: 288 TISNEAP---W-ILTVGASTLDRSI 308
P I+TVGA T + +I
Sbjct: 153 NNPVSDPASANNIITVGAVTENGTI 177
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 7e-18
Identities = 63/182 (34%), Positives = 85/182 (46%), Gaps = 33/182 (18%)
Query: 108 FGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG 167
GKGV + ++D GI+ HP+ G C C K+ G F + + G
Sbjct: 11 TGKGVKVAVVDTGIDYTHPAL-------------GGCFGPGC--KVAGGYDF-VGDDYDG 54
Query: 168 TEP------PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
T P P+D GHGTHVAG A N + G G+AP A L Y+V FG
Sbjct: 55 TNPPVPDDDPMDCQGHGTHVAGIIAA----NPNAYG-----FTGVAPEATLGAYRV-FGC 104
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281
TE ++A A EDG DV++ S+GG S + D AV + + G+ V+ AAGN
Sbjct: 105 SGSTTEDTIIAAFLRAYEDGADVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGN 163
Query: 282 SG 283
G
Sbjct: 164 DG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 57/211 (27%), Positives = 82/211 (38%), Gaps = 45/211 (21%)
Query: 110 KGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGN----- 164
V++ ++D G++ +HP D W N I + +GN
Sbjct: 2 GDVVVAVIDTGVDYNHPDLKD-------NMWV--------NPGEIPGNGIDDDGNGYVDD 46
Query: 165 ------VKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVC 218
V P+D +GHGTHVAG GN AG+A + K
Sbjct: 47 IYGWNFVNNDNDPMDDNGHGTHVAGIIGAV--------GNNGIGIAGVAWNVKIMPLKF- 97
Query: 219 FGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG-GSVPFFNDSIAVGSFAAIQKGIFVSC 277
G D T SD + +D A++ G +++ S GG G D+IA AI GI
Sbjct: 98 LGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVA 153
Query: 278 AAGNSGPFNSTI-----SNEAPWILTVGAST 303
AAGN G N S + I++V A+
Sbjct: 154 AAGNDGTNNDKTPTYPASYDLDNIISVAATD 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489
++ P + G ++ + TV SFSSRGP G +KPD++ PG IL+A
Sbjct: 179 ASNNPSVSNGEGGLGQSDN-SDTVASFSSRGP--TYDGRIKPDLVAPGTGILSARSGGGG 235
Query: 490 FNTNPKSIFNIMSGTSMACPHLSGIAALL----------KSSHPYWSPAAIKSALMTTAD 539
S + SGTSMA P ++G AALL +P S A +K+ L+ +A
Sbjct: 236 IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 102 VWKESNF-GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF----------STCN 150
+W + + G+G+++ ++D G++P H +F AK+ + N
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFR--LDDDSKAKYSEEFEAKKKKAGIGYGKYYN 59
Query: 151 NKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYA 210
K+ A +N N D HG HVAG AG N + N +G G+AP A
Sbjct: 60 EKVPFA--YNYADNNDDILDEDDGSSHGMHVAGIVAG----NGDEEDNGEGI-KGVAPEA 112
Query: 211 HLAIYKVCFG--GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGS--F 266
L KV F + ++ A++ G DV+++S+G + +
Sbjct: 113 QLLAMKV-FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGST-----AGFVDLDDPEQ 166
Query: 267 AAIQ----KGIFVSCAAGNSGPFNSTIS----NEAPWILTVGASTLDRSIVATA 312
AI+ G+ V AAGN G S S P TVG+ ++ A
Sbjct: 167 QAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVA 220
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 17/83 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP + ++ PG+ IL+ + P + + +SGTSMA PH++G+
Sbjct: 164 SFSSTGPEV--------ELAAPGVDILSTY---------PNNDYAYLSGTSMATPHVAGV 206
Query: 515 AALLKSSHPYWSPAAIKSALMTT 537
AAL+ S P + A ++ AL T
Sbjct: 207 AALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
FS+ G + KPDI+ PG +IL++ ++ SGTSMA P ++G
Sbjct: 179 DFSNYGGPVDGI---KPDIVAPGGNILSSG------PGGDLGGYDSHSGTSMAAPLVAGA 229
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLLNMNG 545
AALL S++P +P +++ L+TTA L G
Sbjct: 230 AALLLSANPSLTPETLRALLVTTATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
FSS GP LKPD+ PG +IL+ + PL + ++SGTSMA P+++G
Sbjct: 190 YFSSWGPTNE--LYLKPDVAAPGGNILSTY--PLAGGG-----YAVLSGTSMATPYVAGA 240
Query: 515 AALLKSS-HPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
AALL + H SPA ++ L +TA L + L P GAG VN +A
Sbjct: 241 AALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPV--AQQGAGLVNAYKA 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G GV + ++D G++P HP K + F V
Sbjct: 27 GSGVTVAVVDTGVDPTHPDLLKV--------------------KFVLGYDF-----VDND 61
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
+D +GHGTHVAG A A N G AG+AP A + KV + + +
Sbjct: 62 SDAMDDNGHGTHVAGIIAAA-------TNNGTG-VAGVAPKAKIMPVKV-LDANGSGSLA 112
Query: 229 DLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST 288
D+ G+ A + G V+++S+GG + ++ A KG+ V AAGN G + +
Sbjct: 113 DIANGIRYAADKGAKVINLSLGG---GLGSTALQEAINYAWNKGVVVVAAAGNEGVSSVS 169
Query: 289 ISNEAPWILTVGASTLDR 306
P + V A+ D
Sbjct: 170 YPAAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 450 APTVVSFSSRGPNLASPG---------ILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNI 500
FSS G + AS KPD+ PG+ + +A N +
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGA-----NGDGQYTR 215
Query: 501 MSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539
+SGTSMA PH++G+AALL ++HP SP IK AL TA
Sbjct: 216 LSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 57/197 (28%), Positives = 82/197 (41%), Gaps = 41/197 (20%)
Query: 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171
V++ I+D G++ +HP S KL+ F V +P
Sbjct: 1 VVVAIIDTGVDLNHPDLSG-------------------KPKLVPGWNF-----VSNNDPT 36
Query: 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLL 231
D+DGHGT AG AA +GN AG+AP A L ++ SD+
Sbjct: 37 SDIDGHGTACAGVAAA--------VGNNGLGVAGVAPGAKLMPVRI-ADSLGYAYWSDIA 87
Query: 232 AGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQ-----KGIFVSCAAGNSGPFN 286
+ A ++G DV+S S GGS + S A+ + A KG V AAGNSG
Sbjct: 88 QAITWAADNGADVISNSW-GGSDSTESISSAIDN--AATYGRNGKGGVVLFAAGNSGRSV 144
Query: 287 STISNEAPWILTVGAST 303
S+ P ++ V A+
Sbjct: 145 SSGYAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-13
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 5 TYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEE 64
TYIV + S ++WH S + YSYK+ +GFAAKLTEEE
Sbjct: 1 TYIVKFKDGVSKAAVFSS-HKSWHAS-----SKEEAAGASILYSYKHGFNGFAAKLTEEE 54
Query: 65 VQDMKKKNGFVSARPERKVRLQ 86
+ ++K P++ V L
Sbjct: 55 AEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 16/85 (18%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G D+ PG+ IL +T+P + MSGTSMA PH++G
Sbjct: 191 SFSNYGKKTV-------DLAAPGVDIL---------STSPGGGYGYMSGTSMATPHVAGA 234
Query: 515 AALLKSSHPYWSPAAIKSALMTTAD 539
AALL S +P + A IK A++++AD
Sbjct: 235 AALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 50/188 (26%), Positives = 75/188 (39%), Gaps = 49/188 (26%)
Query: 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP- 170
V + ++D GI+PDHP N+ ++ +G G E
Sbjct: 2 VTVAVIDSGIDPDHPDLK--------------------NSISSYSKNLVPKGGYDGKEAG 41
Query: 171 -------PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV 223
+D GHGT VAG A A G G+AP + Y+V FG
Sbjct: 42 ETGDINDIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRV-FGSCG 88
Query: 224 DCTESDLLAGLDAAIEDGVDVLSISIGG---GSVPFFNDSIAVGSFA-----AIQKGIFV 275
S ++ + A +DGVDV+++S+GG + +D + ++ A KG V
Sbjct: 89 SAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIV 148
Query: 276 SCAAGNSG 283
AAGN G
Sbjct: 149 VAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 51/204 (25%), Positives = 76/204 (37%), Gaps = 63/204 (30%)
Query: 104 KESNF-GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIE 162
S F G GV + +LD GI+ HP+F + I ++F
Sbjct: 1 TTSPFTGAGVRVAVLDTGIDLTHPAF---------------------AGRDITTKSFVGG 39
Query: 163 GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGD 222
+V+ D GHGTH AGT G V G G+A A +A+ GD
Sbjct: 40 EDVQ------DGHGHGTHCAGTIFGRDV---------PGPRYGVARGAEIALIGK-VLGD 83
Query: 223 VDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG------------------ 264
+ +LAG+ A+ +G DV+S+S+G + G
Sbjct: 84 GGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFD 143
Query: 265 -------SFAAIQKGIFVSCAAGN 281
+ AA+ +G + AAGN
Sbjct: 144 ALMTLVAAQAALARGTLIVAAAGN 167
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 51/203 (25%), Positives = 73/203 (35%), Gaps = 27/203 (13%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
GKG I+G+ D G++ +H F D F + K++ + +
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFN-------KTNLF---HRKIVRYDSL--------S 47
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
+ DVDGHGTHVAG AG ++ G+AP A L + +
Sbjct: 48 DTKDDVDGHGTHVAGIIAG----KGND-SSSISLYKGVAPKAKLYFQDIGDTSGNLSSPP 102
Query: 229 DLLAGLDAAIEDGVDVLSISIGGGSVPFFND-SIAVGSFAAIQKGIFVSCAAGNSGPFNS 287
DL + G + S S G + + A FA I +AGN G S
Sbjct: 103 DLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGNDGS 162
Query: 288 TISNEAPW---ILTVGASTLDRS 307
+LTVGAS
Sbjct: 163 NTIGSPATAKNVLTVGASNNPSV 185
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G + DI PG+ IL+AW + +SGTSMA PH++G+
Sbjct: 185 SFSNYGSCV--------DIFAPGVDILSAWI-------GSDTATATLSGTSMAAPHVAGL 229
Query: 515 AALLKSSHPYWSPAAIKSALMTTA 538
AA L S P SPA +K+ L+ A
Sbjct: 230 AAYLLSLGPDLSPAEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 6e-12
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 447 NSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSM 506
N ++ FS RGP G +KPDI PG++IL A +P + SGTS+
Sbjct: 353 NQNNNSIAIFSGRGPT--RDGRIKPDIAAPGVNILTA---------SPGGGYTTRSGTSV 401
Query: 507 ACPHLSGIAALL------KSSHPYWSPAAIKSALMTTAD 539
A ++G ALL + + PY IK+ L+ A
Sbjct: 402 AAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 60/211 (28%), Positives = 81/211 (38%), Gaps = 55/211 (26%)
Query: 109 GKGVIIGILDGGINPDHPSF---------------SDEGMPPPPAKWKGRCDFSTCNNKL 153
GKGV++GI+D GI+ HP F + G PPP +
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGY-----YGGGEYTEE 57
Query: 154 IGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLA 213
I + N P D +GHGTHVAG AAG G+ G+AP A L
Sbjct: 58 IINAALASD-NPYDIVPSRDENGHGTHVAGIAAGN--------GDNNPDFKGVAPEAELI 108
Query: 214 I--------YKVCFGGDVDCT-ESDLLAGL----DAAIEDGVD-VLSISIG-------GG 252
+ Y F DV E+D++ + D A+E V++IS+G G
Sbjct: 109 VVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDGT 168
Query: 253 SVPFFNDSIAVGSFAAIQKGIFVSCAAGNSG 283
S I + +GI V AGN G
Sbjct: 169 S--LLERYI---DAISRLRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 11/68 (16%)
Query: 456 FSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIA 515
FSSRGP+ +KPDI PG++I +A P + SGTSMA PH++G+A
Sbjct: 190 FSSRGPSTYGR--IKPDISAPGVNIRSAV---------PGGGYGSSSGTSMAAPHVAGVA 238
Query: 516 ALLKSSHP 523
ALL S++P
Sbjct: 239 ALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 443 TVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMS 502
+ N + FSS GP LKPDI PG +I + N N + MS
Sbjct: 224 KKVPNPNGGQMSGFSSWGP--TPDLDLKPDITAPGGNIYST------VNDNT---YGYMS 272
Query: 503 GTSMACPHLSGIAAL----LKSSHPYWSPA----AIKSALMTTAD 539
GTSMA PH++G +AL LK +P S +K+ LM TA
Sbjct: 273 GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTAT 317
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 465 SPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPY 524
S G DI PG IL+ T + +SGTSMA P ++G+AALL S++P
Sbjct: 176 SNGGAGVDIAAPGGDILS-------SPTTGGGGYATLSGTSMAAPIVAGVAALLLSANPD 228
Query: 525 WSPAAIKSALMTT 537
+PA +K+AL++T
Sbjct: 229 LTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 18/85 (21%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G + D+ PG IL+ P + MSGTSMA PH++G+
Sbjct: 191 SFSNYGKWV--------DVSAPGGGILSTT---------PDGDYAYMSGTSMATPHVAGV 233
Query: 515 AALLKSSHPYWSPAAIKSALMTTAD 539
AALL S P S + ++ AL TAD
Sbjct: 234 AALLYSQGP-LSASEVRDALKKTAD 257
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 43/215 (20%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G G+++ +D G++ HP+ + K++G S ++ +N V T
Sbjct: 1 GTGIVVANIDTGVDWTHPALKN--------KYRGWGGGSADHD-------YNWFDPVGNT 45
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
P D +GHGTH GT G + G G+AP A + ++
Sbjct: 46 PLPYDDNGHGTHTMGTMVGN---------DGDGQQIGVAPGARWIACRAL--DRNGGNDA 94
Query: 229 DLL------------AGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVS 276
D L AG A + DV++ S GG S AV ++ A GIF
Sbjct: 95 DYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWRA--AGIFPV 152
Query: 277 CAAGNSGPFNSTISNEA---PWILTVGASTLDRSI 308
AAGN GP ST++ P VGA+ + +
Sbjct: 153 FAAGNDGPRCSTLNAPPANYPESFAVGATDRNDVL 187
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-10
Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 328 PKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNA 387
P D LV AG G PE G DVKGK+ L +R G I + K K A
Sbjct: 20 PTDLLGKTYELVDAG-LGTPED-------FEGKDVKGKIALIQR-GEITFVEKIANAKAA 70
Query: 388 GGAAMILMNDEPNAFSVIADPHV-LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIG 446
G +I+ N+ V +P +S + G +K+ + S+ + F
Sbjct: 71 GAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALESS----KKLTFNTKKEK 126
Query: 447 NSLAPTVVSFSSRGP 461
+ P + FSSRGP
Sbjct: 127 ATN-PDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.3 bits (150), Expect = 4e-10
Identities = 65/275 (23%), Positives = 96/275 (34%), Gaps = 44/275 (16%)
Query: 104 KESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEG 163
GKGV + ++D G++ HP + F
Sbjct: 136 GAGLTGKGVTVAVIDTGVDASHPDL---------------------AGSAVAGGDFVDGD 174
Query: 164 NVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV 223
P +D +GHGTHVAGT A N AG+AP A L + KV G
Sbjct: 175 PE---PPFLDDNGHGTHVAGTIAAVIFDNGAG-------VAGVAPGAKLLLVKVLGSGGG 224
Query: 224 DCTESDLLAGLDAAIEDG--VDVLSISIGGGSVPFFNDSIAVG-SFAAIQKGIFVSCAAG 280
SD+ G++ A G DV+++S+GG + ++ + AA G+ + AAG
Sbjct: 225 SGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAG 284
Query: 281 NSGPFNSTISNEAPW------ILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQT 334
N G S P ++ VGA L ++ A N G + P
Sbjct: 285 NDGSNASGGDLAYPASYPAPNVIAVGALDLSDTV---ASFSNDGSPTGVDIAAP-GVNIL 340
Query: 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLC 369
L V + S++ V G L
Sbjct: 341 SLSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALV 375
|
Length = 508 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 8e-10
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 337 PLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMN 396
PLVY G ++ C L+ DVKGK+VL R GG + + K E + AG A +I+ N
Sbjct: 9 PLVYVGNGD--DAGGCCPEDLADSDVKGKIVLVRR-GGCSFVEKAENAQRAGAAGVIIYN 65
Query: 397 DEPNAF---SVIADPHVLPATHVSNDAGLKI 424
++ +P +S + G +
Sbjct: 66 NDTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 56/192 (29%), Positives = 77/192 (40%), Gaps = 44/192 (22%)
Query: 103 WKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIE 162
W+ G GV + + D G+ DHP F K R +++ N K T +
Sbjct: 1 WQLGYTGAGVKVAVFDTGLAKDHPHFR---------NVKERTNWT--NEK-----TLD-- 42
Query: 163 GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGD 222
D GHGT VAG A + + G AP A + I++V
Sbjct: 43 ----------DGLGHGTFVAGVIASS-----------REQCLGFAPDAEIYIFRVFTNNQ 81
Query: 223 VDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQ-KGIFVSCAAGN 281
V T S L + AI +DVL++SIGG P F D V + I + A GN
Sbjct: 82 VSYT-SWFLDAFNYAILTKIDVLNLSIGG---PDFMDKPFVDKVWELTANNIIMVSAIGN 137
Query: 282 SGPFNSTISNEA 293
GP T++N A
Sbjct: 138 DGPLYGTLNNPA 149
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHL 511
SFSS GP + G LKPD++ G I N +GTS +CP +
Sbjct: 185 NKASFSSIGPT--ADGRLKPDVMALGTGIYVI---------NGDGNITYANGTSFSCPLI 233
Query: 512 SGIAALLKSSHPYWSPAAIKSALMTTAD 539
+G+ A L +HP W+ IK A++ +A
Sbjct: 234 AGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 25/132 (18%)
Query: 444 VIGNSLAPTVVSFSSRGPNLASPGILK--------PDIIGPGLSILAAWFEPLDFNTNPK 495
V + P+ + ++ G + DI PG+ I++A P
Sbjct: 178 VGNPAACPSAMGVAAVGALGRTGNFSAVANFSNGEVDIAAPGVDIVSAA---------PG 228
Query: 496 SIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMN-GERIVDETLR 554
+ MSGTSMA PH++G+AAL W+ A K+ A LL +
Sbjct: 229 GGYRSMSGTSMATPHVAGVAAL-------WAEALPKAGGRALAALLQARLTAARTTQFAP 281
Query: 555 PADIFAIGAGHV 566
D+ G G
Sbjct: 282 GLDLPDRGVGLG 293
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 42/171 (24%), Positives = 59/171 (34%), Gaps = 41/171 (23%)
Query: 114 IGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPID 173
+G++D GI+ HP+ S + G P
Sbjct: 3 VGMIDTGIDTAHPALS--------------------AVVIARLF-------FAGPGAPAP 35
Query: 174 VDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAG 233
HGT VA AGA + L A A + GG + L
Sbjct: 36 SA-HGTAVASLLAGAGAQRPGLLPGADLYGAD-------VFGRA--GGGEGASALALARA 85
Query: 234 LDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGP 284
LD E GV V++IS+ G ++A AA +G+ + AAGN GP
Sbjct: 86 LDWLAEQGVRVVNISLAGPPNALLAAAVA----AAAARGMVLVAAAGNDGP 132
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 448 SLAPTVVSFSSRGPNLASP-GILKPDIIGP-GLSILAAWFEPLDFNTNPKSIFNIMSGTS 505
+ T SF G L +P KPD+ P G++ +D + + F GTS
Sbjct: 167 APGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNG------TVDGDGDGPPNF---FGTS 217
Query: 506 MACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565
A PH +G+AAL+ S++P +PA I+ AL +TA + P A G+G
Sbjct: 218 AAAPHAAGVAALVLSANPGLTPADIRDALRSTA-----------LDMGEPGYDNASGSGL 266
Query: 566 VNPSRA 571
V+ RA
Sbjct: 267 VDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 455 SFSSRGP--NLASPGI-LKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHL 511
S+S+ GP ++++PG D+ G G +T + + GTSMA PH+
Sbjct: 205 SYSNYGPAVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGST-----YGFLQGTSMAAPHV 259
Query: 512 SGIAALLKSSHPYWSPAAIKSALMTT 537
+G+AAL+KS +P +PA I+S L +T
Sbjct: 260 AGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 47/199 (23%), Positives = 68/199 (34%), Gaps = 39/199 (19%)
Query: 107 NFGKG---VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEG 163
FG G + I ILDG ++ HP F GA +
Sbjct: 4 AFGGGDPRITIAILDGPVDRTHPCF-------------------------RGANLTPLFT 38
Query: 164 NVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV 223
HGTHVA G + E G+AP +
Sbjct: 39 YAAAACQDGGASAHGTHVASLIFGQPCSSVE----------GIAPLCRGLNIPIFAEDRR 88
Query: 224 DCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFA-AIQKGIFVSCAAGNS 282
C++ DL ++ A+E G +++IS G + D I + A Q + + AAGN
Sbjct: 89 GCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNE 148
Query: 283 GPFNSTISNEAPWILTVGA 301
G + P +L VGA
Sbjct: 149 GCACLHVPAALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Query: 335 PLPLVYAGMNGKPESAFCGNGSL--SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAM 392
P CG G+ SG DVKGK+VL R GG + K + + AG A+
Sbjct: 16 FNPPSSPVGVVAGPLVGCGYGTTDDSGADVKGKIVLVRR-GGCSFSEKVKNAQKAGAKAV 74
Query: 393 ILMNDEPNAFSVIADPHVLPATH------VSNDAGLKIKSYINSTAT 433
I+ N+ + + + +S G + S + + T
Sbjct: 75 IIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKT 121
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 453 VVSFSSRGPNL----ASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMAC 508
+ FSSRG G +KPDI+ G + + ++ +SGTS+A
Sbjct: 166 IARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS-----KLKGGCRA----LSGTSVAS 216
Query: 509 PHLSGIAALLKSSHP----YWSPAAIKSALMTTADLL 541
P ++G ALL S+ P +PA++K AL+ +A L
Sbjct: 217 PVVAGAVALLLSTVPEKRDLINPASMKQALIESATRL 253
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 47/231 (20%), Positives = 72/231 (31%), Gaps = 73/231 (31%)
Query: 100 MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTF 159
W++ GKGV + ++D G+ HP D ++
Sbjct: 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKD---------------------NYDPEASY 67
Query: 160 NIEGNVKGTEP-PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVC 218
+ N P D + HGT AG A GN G+AP A L ++
Sbjct: 68 DFNDNDPDPTPRYDDDNSHGTRCAGEIAAV--------GNNGICGVGVAPGAKLGGIRM- 118
Query: 219 FGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN-------DSIAVGSFA---- 267
LD + D V+ S+ + + ++ D V
Sbjct: 119 ---------------LDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQ 163
Query: 268 -AIQKG----------IFVSCAAGNSGPF--NSTISNEA--PWILTVGAST 303
A++ G IFV AAGN G N + ++V A T
Sbjct: 164 RALENGVTNGRNGKGSIFVW-AAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-06
Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 42/196 (21%)
Query: 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170
GV + ++D G++ DHP N L G T ++E V E
Sbjct: 1 GVRVAVIDSGVDTDHPDLG--------------------NLALDGEVTIDLEIIVVSAEG 40
Query: 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDL 230
D DGHGT A G AP A + K+ G D C L
Sbjct: 41 G-DKDGHGTACA------------------GIIKKYAPEAEIGSIKI-LGEDGRCNSFVL 80
Query: 231 LAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTIS 290
L A +E+ + ++++S+GG F + +A GI V AA N+ T
Sbjct: 81 EKALRACVENDIRIVNLSLGGPGDRDFPLLKELLEYAYKAGGIIV-AAAPNNNDI-GTPP 138
Query: 291 NEAPWILTVGASTLDR 306
P ++ V + T D
Sbjct: 139 ASFPNVIGVKSDTADD 154
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 52/211 (24%)
Query: 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTF-NIEGNVKGTE 169
G+ I ++D G H +F+ + + +K N +++G F + N T+
Sbjct: 1 GITIAVIDAGFPKVHEAFAFKHL------FK--------NLRILGEYDFVDNSNNTNYTD 46
Query: 170 PPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYA--HLAIYKVCFGGDVDCTE 227
D HGT V T AG G G AP A +LA + + E
Sbjct: 47 -----DDHGTAVLSTMAG----------YTPGVMVGTAPNASYYLARTED-VASETPVEE 90
Query: 228 SDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDS--------------IAVGSFAAIQKGI 273
+ +A + A GVD++S S+G F N + I+ + A KG+
Sbjct: 91 DNWVAAAEWADSLGVDIISSSLG--YTTFDNPTYSYTYADMDGKTSFISRAANIAASKGM 148
Query: 274 FVSCAAGNSGPFNSTI---SNEAPWILTVGA 301
V +AGN G +A +L+VGA
Sbjct: 149 LVVNSAGNEGSTQWKGIGAPADAENVLSVGA 179
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 26/188 (13%)
Query: 103 WKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIE 162
W+ G G+I+ ++D G++ HP +G D + + F
Sbjct: 3 WEFGTGGPGIIVAVVDTGVDGTHPDL------------QGNGDGDG-YDPAVNGYNFVPN 49
Query: 163 GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGD 222
+ + GHGTHVAGT A A N +G G A G+AP + ++ F G
Sbjct: 50 VGDIDNDVSVG-GGHGTHVAGTIA-AVNNNGGGVGGIAG-AGGVAPGVKIMSIQI-FAGR 105
Query: 223 VDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDS--------IAVGSFAAIQKGIF 274
+ + A + A ++G +L S GG ++ I + + GI
Sbjct: 106 YYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIV 165
Query: 275 VSCAAGNS 282
V +AGNS
Sbjct: 166 VF-SAGNS 172
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 158 TFNI--EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIY 215
+ NI +GN+ D HGTHVAG AA F + E G+AP A +
Sbjct: 168 SVNIYDDGNL--LSIVTDSGAHGTHVAGIAAAHFPEEPER--------NGVAPGAQIVSI 217
Query: 216 KVCFGGD--VDCTE--SDLLAGLDAAIEDGVDVLSISIG-GGSVPFFNDSIAVGSFAAIQ 270
K+ GD + E + L+ + AAIE D++++S G P I + + A +
Sbjct: 218 KI---GDTRLGSMETGTALVRAMIAAIETKCDLINMSYGEATHWPNSGRIIELMNEAVNK 274
Query: 271 KGIFVSCAAGNSGPFNSTI 289
G+ +AGN+GP ST+
Sbjct: 275 HGVIFVSSAGNNGPALSTV 293
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 452 TVVSFSSRGP--NLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP 509
SFS+ G ++A+PG +IL+ + + + +SGTSMA P
Sbjct: 197 NKASFSNYGRWVDIAAPG---------VGTILSTV---PKLDGDGGGNYEYLSGTSMAAP 244
Query: 510 HLSGIAALLKSSHP 523
H+SG+AAL+ S P
Sbjct: 245 HVSGVAALVLSKFP 258
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNT--NPKSIFNIMSGTSMACPH 510
VVS+SSRGP++A G KPD+ G + A LD + F++ GTSMA P
Sbjct: 221 VVSWSSRGPSIA--GDPKPDLAAIG-AFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPM 277
Query: 511 LSGIAALLKSSH------PYWSPAAIKSALMTTA 538
+G AAL+ S+ + P +++ LM+TA
Sbjct: 278 TAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D+ PG I + T P + + SGTSMA P +SG+AAL+ S +P + +K
Sbjct: 233 DVFAPGERIYS---------TTPDNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVK 283
Query: 532 SALMTTA 538
++ +
Sbjct: 284 QIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 502 SGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAI 561
SGTS A P +SG AAL++S P + A ++ + TAD D +
Sbjct: 223 SGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATAD---HPARGGRD--------DYV 271
Query: 562 GAGHVNPSRA 571
G G V+P A
Sbjct: 272 GYGVVDPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.7 bits (107), Expect = 7e-05
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 446 GNSLAPTVVSFSSRGPNLASPGIL------KPDIIGPGLSILAAWFEPLDFNTNPKSIFN 499
+ AP V++ + + DI PG++IL+ ++ + +
Sbjct: 299 ASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDIAAPGVNILSL--SAVNTLPGDGADYV 356
Query: 500 IMSGTSMACPHLSGIAALLKSSHP-YWSPAAIKSALMTTADLLNMNGERIV-----DETL 553
+SGTSMA PH+SG+AAL+ S++P +PA +++ ++TTA L ++G +
Sbjct: 357 TLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLD 416
Query: 554 RPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILV 603
A A G N + ++ + P L G + V V
Sbjct: 417 AAATDVAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAVAVAGTV 466
|
Length = 508 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 501 MSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539
+SGTS A PH+SG AALL P+ + ++ L+TTA
Sbjct: 229 VSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|239036 cd02121, PA_GCPII_like, PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 19/105 (18%)
Query: 306 RSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESA--FCGNGSLS----- 358
+ + D +P P Y+ +G + + GS
Sbjct: 6 LILTKPDGATGKLIEDTVLE-EPPSPDVVPPFHAYSA-SGNVTAELVYANYGSPEDFEYL 63
Query: 359 ---GIDVKGKVVLCERGGGIARIFKGEQVKNA---GGAAMILMND 397
GIDVKGK+V+ GG IF+G +VKNA G +I+ +D
Sbjct: 64 EDLGIDVKGKIVIARYGG----IFRGLKVKNAQLAGAVGVIIYSD 104
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower efficiency than does GCPII; NAALADase L is not able to hydrolyze alpha-NAAG. The GCPII PA domain (referred to as the apical domain) participates in substrate binding and may act as a protein-protein interaction domain. Length = 220 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 454 VSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSG 513
S+S+ G + D++ PG+ I P + SGTS A P +G
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAG 218
Query: 514 IAALLKSSHPYWSPAAIKSALMTT 537
+AAL+ S++P +PA ++ L +T
Sbjct: 219 VAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSI--LAAWFEPLDFNTNPKSIFNIMSGTSMACP 509
++SSRGP + G L I PG +I + W T S +M+GTSM+ P
Sbjct: 328 NQYTWSSRGP--TADGALGVSISAPGGAIASVPNW-------TLQGS--QLMNGTSMSSP 376
Query: 510 HLSGIAAL----LKSSHPYWSPAAIKSALMTTA 538
+ G AL LK+ ++P +++ AL TA
Sbjct: 377 NACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D PG+ + A P + +SGTS A P ++ ALL + P A
Sbjct: 168 DFAAPGVDVWVA---------APGGGYRYVSGTSFAAPFVTAALALLLQASPLAPDDARA 218
Query: 532 SALMTTADL 540
T DL
Sbjct: 219 RLAATAKDL 227
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAI----KSALMTTADLLNM 543
++T PK+ + ++GTSMA PH++ IA+L+ S +P S + K +++ L N
Sbjct: 542 YSTFPKNSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLKNK 599
|
Length = 639 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 708 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 100.0 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.86 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.29 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.22 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 99.05 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.75 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.73 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.73 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.72 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.7 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.66 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.61 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.6 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.59 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.58 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.54 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.52 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.51 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.49 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.45 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.41 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.41 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.38 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.98 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.41 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.76 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.65 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.29 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.23 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.14 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.88 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.63 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.84 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 94.27 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 94.26 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 93.02 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.97 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 90.84 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 89.62 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 87.43 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 85.06 | |
| PF00635 | 109 | Motile_Sperm: MSP (Major sperm protein) domain; In | 82.72 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.46 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 80.85 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=435.89 Aligned_cols=291 Identities=56% Similarity=0.860 Sum_probs=249.0
Q ss_pred ecccccCCCcccccccCCc--ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCC------CCCceeE
Q 039265 83 VRLQTTHSPSFLGLHQGMG--VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS------TCNNKLI 154 (708)
Q Consensus 83 ~~~~~~~s~~~~g~~~~~~--~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~------~~~~kv~ 154 (708)
+++++++++.++++..... +|..+++|+||+|||||||||++||+|.+....+++..|++.|..+ .|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678889999999887554 4778999999999999999999999999998888999999998876 3899999
Q ss_pred eeeecccCCCCC-------CCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCH
Q 039265 155 GARTFNIEGNVK-------GTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTE 227 (708)
Q Consensus 155 g~~~~~~~~~~~-------~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~ 227 (708)
+.++|..+.+.. ....+.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++.. ..+..
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~-~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD-GGCFG 159 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC-CCccH
Confidence 999998764321 1456778999999999999999876655556666677999999999999999874 14888
Q ss_pred HHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcc
Q 039265 228 SDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRS 307 (708)
Q Consensus 228 ~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~ 307 (708)
+++++||++|++++++|||||||......+.+.+..+++++.++|++||+||||+|+.....++..||+++||+.+
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999987545566788888889999999999999999988888888999999999840
Q ss_pred eEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHc
Q 039265 308 IVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNA 387 (708)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ 387 (708)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCC
Q 039265 388 GGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPG 467 (708)
Q Consensus 388 ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g 467 (708)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCceeeCCCcEEeeecCCC-CCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 468 ILKPDIIGPGLSILAAWFEPL-DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 468 ~~KPDI~APG~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+||||+|||.+|+++++... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 46799999999999986421 122333478999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=447.66 Aligned_cols=299 Identities=20% Similarity=0.199 Sum_probs=216.4
Q ss_pred Cccccccc--CCcccc--cCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCce---eEeeeecccCC
Q 039265 91 PSFLGLHQ--GMGVWK--ESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNK---LIGARTFNIEG 163 (708)
Q Consensus 91 ~~~~g~~~--~~~~~~--~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~k---v~g~~~~~~~~ 163 (708)
..+|+++. +..+|+ .+.+|+||+|||||||||++||+|.++-.... ....|......+++. -..+++|..+
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~GrdgiDdD~nG~vdd~~G~nfVd~- 370 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRKGIDDDNNGNVDDEYGANFVNN- 370 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCccccccccCCcccccccccccCC-
Confidence 44577764 445666 46789999999999999999999986421100 000010000000100 1223455543
Q ss_pred CCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCC
Q 039265 164 NVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGV 242 (708)
Q Consensus 164 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~ 242 (708)
...+.|..||||||||||||...+ .. .+.||||+|+|+.+|+++.. + +..+++++||+||+++|+
T Consensus 371 ----~~~P~D~~GHGTHVAGIIAA~gnN-------~~-Gi~GVAP~AkLi~vKVld~~--G~G~~sdI~~AI~yA~~~GA 436 (639)
T PTZ00262 371 ----DGGPMDDNYHGTHVSGIISAIGNN-------NI-GIVGVDKRSKLIICKALDSH--KLGRLGDMFKCFDYCISREA 436 (639)
T ss_pred ----CCCCCCCCCcchHHHHHHhccccC-------CC-ceeeeecccccceEEEecCC--CCccHHHHHHHHHHHHHCCC
Confidence 346789999999999999997422 22 24899999999999999876 5 788999999999999999
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCc--------------ccC----CCCceEEEccccc
Q 039265 243 DVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST--------------ISN----EAPWILTVGASTL 304 (708)
Q Consensus 243 dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~--------------~~~----~~p~vitVga~~~ 304 (708)
+|||||||+.. +...+..++.+|.++|++||+||||+|..... +|+ ..+++|+|||...
T Consensus 437 ~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~ 513 (639)
T PTZ00262 437 HMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIK 513 (639)
T ss_pred CEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccC
Confidence 99999999752 33567788889999999999999999864321 221 2456677766421
Q ss_pred CcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHH
Q 039265 305 DRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQV 384 (708)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~ 384 (708)
+.
T Consensus 514 d~------------------------------------------------------------------------------ 515 (639)
T PTZ00262 514 DK------------------------------------------------------------------------------ 515 (639)
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCC
Q 039265 385 KNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLA 464 (708)
Q Consensus 385 ~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 464 (708)
...-.++.||++|.
T Consensus 516 ---------------------------------------------------------------~~~~s~s~~Snyg~--- 529 (639)
T PTZ00262 516 ---------------------------------------------------------------NNQYSLSPNSFYSA--- 529 (639)
T ss_pred ---------------------------------------------------------------CCcccccccccCCC---
Confidence 00002345666652
Q ss_pred CCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccC
Q 039265 465 SPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMN 544 (708)
Q Consensus 465 ~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~ 544 (708)
.++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.+++..
T Consensus 530 ----~~VDIaAPG~dI~St~p~---------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~ 596 (639)
T PTZ00262 530 ----KYCQLAAPGTNIYSTFPK---------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL 596 (639)
T ss_pred ----CcceEEeCCCCeeeccCC---------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC
Confidence 235999999999999987 7899999999999999999999999999999999999999999876321
Q ss_pred CccccccCCCCCCCCccC-CCCCCcCCCCCCcccc
Q 039265 545 GERIVDETLRPADIFAIG-AGHVNPSRANDPGLVY 578 (708)
Q Consensus 545 ~~~~~~~~~~~~~~~~~G-~G~vn~~~Al~~~l~~ 578 (708)
+..+| +|+||+++||+.++-+
T Consensus 597 -------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------------CCccccCcEEcHHHHHHHHHhc
Confidence 12333 3899999999866643
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=413.81 Aligned_cols=270 Identities=25% Similarity=0.248 Sum_probs=204.8
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHh
Q 039265 106 SNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTA 185 (708)
Q Consensus 106 g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGii 185 (708)
|++|+||+|||||||||.+||++.+...+ ++.+...+... .....|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-----------------~l~~~~~~~~~-----~~~~~d~~gHGT~vAgii 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-----------------DLPGNVNVLGD-----LDGGSGGGDEGRAMLEII 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-----------------CCCcceeeccc-----cCCCCCCCchHHHHHHHH
Confidence 57999999999999999998855432111 11111111111 124567889999999999
Q ss_pred hcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCC-CCCHHHHH
Q 039265 186 AGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPF-FNDSIAVG 264 (708)
Q Consensus 186 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~-~~~~~~~a 264 (708)
+ ||||+|+|+.+|+. ...+++++||+||+++|++|||||||....+. ....+..+
T Consensus 59 ~------------------GvAP~a~l~~~~~~------~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~a 114 (275)
T cd05562 59 H------------------DIAPGAELAFHTAG------GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQA 114 (275)
T ss_pred h------------------ccCCCCEEEEEecC------CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHH
Confidence 3 99999999998873 34688999999999999999999999865443 33467788
Q ss_pred HHHHHhc-CceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEec
Q 039265 265 SFAAIQK-GIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAG 342 (708)
Q Consensus 265 ~~~a~~~-Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (708)
+.++.++ |++||+||||+|... ..+++..|++|+|||.+........
T Consensus 115 i~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------------------------------- 163 (275)
T cd05562 115 VDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG------------------------------- 163 (275)
T ss_pred HHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc-------------------------------
Confidence 8888887 999999999999864 3457889999999997433210000
Q ss_pred CCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHH
Q 039265 343 MNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGL 422 (708)
Q Consensus 343 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 422 (708)
.|. + .
T Consensus 164 --------s~~------------------~---------------------------~---------------------- 168 (275)
T cd05562 164 --------SDP------------------A---------------------------P---------------------- 168 (275)
T ss_pred --------ccc------------------c---------------------------c----------------------
Confidence 000 0 0
Q ss_pred HHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCC-cEEeeecCCCCCCCCCCcceeec
Q 039265 423 KIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGL-SILAAWFEPLDFNTNPKSIFNIM 501 (708)
Q Consensus 423 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~y~~~ 501 (708)
.......+.|+++||+. ++++||||+|||+ ++.++... +.|..+
T Consensus 169 ------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~ 213 (275)
T cd05562 169 ------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNF 213 (275)
T ss_pred ------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------Cceeec
Confidence 00011345678889987 5789999999975 44555544 789999
Q ss_pred cchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 502 SGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 502 sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
+|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+||+
T Consensus 214 sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 214 FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999999999998742 2456799999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=407.02 Aligned_cols=243 Identities=31% Similarity=0.481 Sum_probs=199.9
Q ss_pred cccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHH
Q 039265 103 WKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVA 182 (708)
Q Consensus 103 ~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVA 182 (708)
|+++++|+||+|||||||||.+||+|.+. ....+|.. .....|..|||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------~~~~~~~~------~~~~~d~~gHGT~VA 52 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------KERTNWTN------EKTLDDGLGHGTFVA 52 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------ccccccCC------CCCCCCCCCcHHHHH
Confidence 89999999999999999999999999742 01112322 234567889999999
Q ss_pred HHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHH
Q 039265 183 GTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSI 261 (708)
Q Consensus 183 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~ 261 (708)
|||+|+.. .+.||||+|+|+.+|++.+. + ...+.++++|+||++++++|||||||... +...++
T Consensus 53 GiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~--~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~ 117 (255)
T cd07479 53 GVIASSRE-----------QCLGFAPDAEIYIFRVFTNN--QVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPF 117 (255)
T ss_pred HHHHccCC-----------CceeECCCCEEEEEEeecCC--CCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHH
Confidence 99998741 13799999999999999876 5 56678999999999999999999999753 234566
Q ss_pred HHHHHHHHhcCceEEEecCCCCCCCC--cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEE
Q 039265 262 AVGSFAAIQKGIFVSCAAGNSGPFNS--TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLV 339 (708)
Q Consensus 262 ~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (708)
..++.++.++|++||+||||+|+... .+++..+++|+|||..
T Consensus 118 ~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~------------------------------------ 161 (255)
T cd07479 118 VDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID------------------------------------ 161 (255)
T ss_pred HHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec------------------------------------
Confidence 66777888999999999999997543 3467788999999842
Q ss_pred EecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHH
Q 039265 340 YAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSND 419 (708)
Q Consensus 340 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 419 (708)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCC----CCCCCcCCceeeCCCcEEeeecCCCCCCCCCC
Q 039265 420 AGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNL----ASPGILKPDIIGPGLSILAAWFEPLDFNTNPK 495 (708)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~ 495 (708)
..+.++.|||+|++. ...+++||||+|||.+|+++.+.
T Consensus 162 -----------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~--------- 203 (255)
T cd07479 162 -----------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK--------- 203 (255)
T ss_pred -----------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------
Confidence 122678899999652 12578899999999999988765
Q ss_pred cceeeccchhhhHHHHHHHHHHHHhcCC----CCCHHHHHHHHHccccccc
Q 039265 496 SIFNIMSGTSMACPHLSGIAALLKSSHP----YWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 496 ~~y~~~sGTSmAaP~VAG~aALl~q~~p----~~s~~~vk~~L~~TA~~~~ 542 (708)
+.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 204 ~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 7799999999999999999999999998 7899999999999999863
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=433.58 Aligned_cols=398 Identities=24% Similarity=0.265 Sum_probs=244.9
Q ss_pred CCCCccEEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccCCCCCceeEeeeeccc--------CCCCCCCCCCCCCCCC
Q 039265 107 NFGKGVIIGILDGGINPDHPSFS-DEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI--------EGNVKGTEPPIDVDGH 177 (708)
Q Consensus 107 ~~G~Gv~VaVIDtGid~~Hp~f~-~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~--------~~~~~~~~~~~d~~gH 177 (708)
++|+||+|||||||||+.||+|. .++.+|+...|++....+.......+...+.+ ..+........|+.||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 58999999999999999999999 46788999999998886533333333222221 1111113456789999
Q ss_pred hHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCC---------CCCHHHHHHHHHHHHHC-----CCc
Q 039265 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV---------DCTESDLLAGLDAAIED-----GVD 243 (708)
Q Consensus 178 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~---------g~~~~~i~~ai~~a~~~-----g~d 243 (708)
||||||||||+..+ ...+.||||+|+|+.+|++..... .+..++++.||+|+++. .+.
T Consensus 81 GThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~ 152 (455)
T cd07478 81 GTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPL 152 (455)
T ss_pred hHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999998533 223489999999999999987621 15688999999998874 478
Q ss_pred EEEEccCCCCC-CCCCCHHHHHHHHHHhc-CceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceee
Q 039265 244 VLSISIGGGSV-PFFNDSIAVGSFAAIQK-GIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD 321 (708)
Q Consensus 244 VIn~S~G~~~~-~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 321 (708)
|||||||.... ....+.++.++..+.++ |++||+||||+|....++.+... .....-..++.++.+..-.
T Consensus 153 VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~~~~ 224 (455)
T cd07478 153 VINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGEKGF 224 (455)
T ss_pred EEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCCcce
Confidence 99999998643 34456777777777765 99999999999987666543100 0000111222333332222
Q ss_pred eeeccCCCCCCCCceeEEEecCCCCC-----------------CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHH
Q 039265 322 GESVFQPKDFPQTPLPLVYAGMNGKP-----------------ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQV 384 (708)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~ 384 (708)
...+|...+ ..-.+.++.+...... ....|.... .+....|.-.+..+- .+
T Consensus 225 ~~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~~---------~~- 292 (455)
T cd07478 225 NLEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIRF---------KN- 292 (455)
T ss_pred EEEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEEc---------cC-
Confidence 222222211 0000111111100000 000010000 000111111111110 00
Q ss_pred HHcCCcEEEEecCCC--CCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEe-----C--CcCCCcccc
Q 039265 385 KNAGGAAMILMNDEP--NAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVI-----G--NSLAPTVVS 455 (708)
Q Consensus 385 ~~~ga~~~i~~~~~~--~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~-----~--~~~~~~~a~ 455 (708)
...+.+.|.+.... ++. -..|+|.-.+...+.. ++ .+++..+++.+++.. + +...+.++.
T Consensus 293 -~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~----f~--~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~ 361 (455)
T cd07478 293 -IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTR----FL--EPDPYTTLTIPGTARSVITVGAYNQNNNSIAI 361 (455)
T ss_pred -CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCE----ee--cCCCCceEecCCCCCCcEEEEEEeCCCCcccC
Confidence 11122222221111 111 1135554444333221 11 223445566554321 1 123456999
Q ss_pred ccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcC------CCCCHHH
Q 039265 456 FSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSH------PYWSPAA 529 (708)
Q Consensus 456 fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~~s~~~ 529 (708)
||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||+||||+|.+ |.|++++
T Consensus 362 ~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ 430 (455)
T cd07478 362 FSGRGPTR--DGRIKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEK 430 (455)
T ss_pred ccCCCcCC--CCCcCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHH
Confidence 99999998 689999999999999999986 789999999999999999999999865 5679999
Q ss_pred HHHHHHccccccccCCccccccCCCCCCCCccCCC
Q 039265 530 IKSALMTTADLLNMNGERIVDETLRPADIFAIGAG 564 (708)
Q Consensus 530 vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 564 (708)
||++|++||+++.. ..+++.++|||
T Consensus 431 ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 431 IKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 99999999998742 24678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=412.12 Aligned_cols=286 Identities=30% Similarity=0.286 Sum_probs=190.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
|+||+|||||||||.+||+|.++... .|+..++. ...+....++..+. ...+.|++||||||||||||.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d~---~~~~~~g~d~~~~~----~~~~~D~~gHGThvAGiiag~ 69 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFDY---KAYLLPGMDKWGGF----YVIMYDFFSHGTSCASVAAGR 69 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccCc---CCCccCCcCCCCCc----cCCCCCccccchhHHHHHhcc
Confidence 89999999999999999999754211 11111110 00122222222110 134678999999999999998
Q ss_pred cccCCcccCC-CCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHH-------HHHHH--HHCCCcEEEEccCCCCCCCC-
Q 039265 189 FVKNAESLGN-AKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLA-------GLDAA--IEDGVDVLSISIGGGSVPFF- 257 (708)
Q Consensus 189 ~~~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~-------ai~~a--~~~g~dVIn~S~G~~~~~~~- 257 (708)
.....+..++ ....+.||||+|+|+.+|++.... ......+.. +++|. .+++++|||||||.......
T Consensus 70 ~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~ 148 (311)
T cd07497 70 GKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD-VIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148 (311)
T ss_pred CcccccccccccccceeeeCCCCEEEEEEEEecCC-cchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence 5432221111 123458999999999999997541 122222222 34443 36799999999997542211
Q ss_pred ----CCHHHHHHHH-HHhcCceEEEecCCCCCCC--CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 258 ----NDSIAVGSFA-AIQKGIFVSCAAGNSGPFN--STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 258 ----~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
.+..+..... +.++|+++|+||||+|+.. ...++.++++|+|||++........
T Consensus 149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------------------- 209 (311)
T cd07497 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY------------------- 209 (311)
T ss_pred cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh-------------------
Confidence 1223333322 2389999999999999764 3456788999999997432110000
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
. .+
T Consensus 210 ------~---------------------------------~~-------------------------------------- 212 (311)
T cd07497 210 ------L---------------------------------FG-------------------------------------- 212 (311)
T ss_pred ------h---------------------------------hc--------------------------------------
Confidence 0 00
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC-
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD- 489 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~- 489 (708)
......+.++.||||||+. ++++||||+|||++|+++.+....
T Consensus 213 ----------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~ 256 (311)
T cd07497 213 ----------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSG 256 (311)
T ss_pred ----------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCC
Confidence 0001234789999999998 689999999999999998765310
Q ss_pred CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCC------CCCHHHHHHHHHccc
Q 039265 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHP------YWSPAAIKSALMTTA 538 (708)
Q Consensus 490 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~s~~~vk~~L~~TA 538 (708)
........|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 257 ~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 257 GALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 1111224799999999999999999999999886 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=417.87 Aligned_cols=311 Identities=28% Similarity=0.360 Sum_probs=234.0
Q ss_pred cccccCC-CCCccEEEEEcCCCCCCCCCCCCCCCCCCCC-----cccccccCC---CCCceeEeeeecccCCCCCCCCCC
Q 039265 101 GVWKESN-FGKGVIIGILDGGINPDHPSFSDEGMPPPPA-----KWKGRCDFS---TCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 101 ~~~~~g~-~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~w~~~~~~~---~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
++|+++. +|+||+|||||||||++||+|.+....+... .++..+... +++.+++..++|.++.+.. ...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDI--LDE 78 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCcc--CCC
Confidence 3788877 9999999999999999999998764443211 122222211 5677888888888653211 114
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeC-CCCCCCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG-GDVDCTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~-~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.+..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. .........+++|++++++.|++|||||||
T Consensus 79 ~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G 153 (346)
T cd07475 79 DDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG 153 (346)
T ss_pred CCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 5789999999999999864321 1234589999999999999974 211377888999999999999999999999
Q ss_pred CCCCC-CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc----------------cCCCCceEEEcccccCcceEEEEE
Q 039265 251 GGSVP-FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI----------------SNEAPWILTVGASTLDRSIVATAK 313 (708)
Q Consensus 251 ~~~~~-~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~ 313 (708)
..... .....+..++.++.++|++||+||||+|...... +...+++|+||+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~-------- 225 (346)
T cd07475 154 STAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK-------- 225 (346)
T ss_pred cCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc--------
Confidence 86432 4556777888889999999999999998654321 2334555555553100
Q ss_pred cCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEE
Q 039265 314 LGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMI 393 (708)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i 393 (708)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCce
Q 039265 394 LMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI 473 (708)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI 473 (708)
......+.++.||+|||+. .+++||||
T Consensus 226 ---------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi 252 (346)
T cd07475 226 ---------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDI 252 (346)
T ss_pred ---------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeE
Confidence 0012234788999999998 57999999
Q ss_pred eeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhc----CCCCCHHH----HHHHHHccccccccCC
Q 039265 474 IGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS----HPYWSPAA----IKSALMTTADLLNMNG 545 (708)
Q Consensus 474 ~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~s~~~----vk~~L~~TA~~~~~~~ 545 (708)
+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+....
T Consensus 253 ~apG~~i~s~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~- 322 (346)
T cd07475 253 TAPGGNIYSTVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS- 322 (346)
T ss_pred EeCCCCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-
Confidence 9999999999876 78999999999999999999999997 78899876 788999999853211
Q ss_pred ccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 546 ERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 546 ~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
.....++.+.++|+|+||+.+||+
T Consensus 323 ----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 ----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred ----CCCCccCCccccCcchhcHHHhhC
Confidence 111445677899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=406.13 Aligned_cols=289 Identities=33% Similarity=0.423 Sum_probs=228.9
Q ss_pred CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCC----CC-CCCCCCCCC
Q 039265 100 MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEG----NV-KGTEPPIDV 174 (708)
Q Consensus 100 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~----~~-~~~~~~~d~ 174 (708)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|.... +. .....+.|.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~ 67 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------GCKVAGGYDFVGDDYDGTNPPVPDDDPMDC 67 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------CceeccccccCCcccccccCCCCCCCCCCC
Confidence 46899999999999999999999999999864211 12233344443221 00 003456677
Q ss_pred CCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCC
Q 039265 175 DGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGS 253 (708)
Q Consensus 175 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 253 (708)
.+|||||||||+|...+ ..+.||||+|+|+.+|++... + .....+++++++|++++++|||||||...
T Consensus 68 ~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~--~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 68 QGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS--GSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC--CCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 99999999999998532 224899999999999999865 4 66777999999999999999999999764
Q ss_pred CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 254 VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 254 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
. +....+..++.++.++|+++|+||||+|.... ..++..+++|+||+.+
T Consensus 137 ~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------- 188 (312)
T cd07489 137 G-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------- 188 (312)
T ss_pred C-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------
Confidence 3 33467777888889999999999999987643 3356778888888731
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCC
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDF 490 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~ 490 (708)
+.||+|||+. +...||||+|||++|+++++...
T Consensus 189 -------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-- 221 (312)
T cd07489 189 -------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-- 221 (312)
T ss_pred -------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC--
Confidence 4578999998 46899999999999999988632
Q ss_pred CCCCCcceeeccchhhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcC
Q 039265 491 NTNPKSIFNIMSGTSMACPHLSGIAALLKSSH-PYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPS 569 (708)
Q Consensus 491 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 569 (708)
+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..... ...++..++|+|+||++
T Consensus 222 -----~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 222 -----GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAY 294 (312)
T ss_pred -----CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHH
Confidence 469999999999999999999999999 9999999999999999987654321111 11356789999999999
Q ss_pred CCCCCcc
Q 039265 570 RANDPGL 576 (708)
Q Consensus 570 ~Al~~~l 576 (708)
+|++..-
T Consensus 295 ~a~~~~~ 301 (312)
T cd07489 295 KALYATT 301 (312)
T ss_pred HHhcCCc
Confidence 9999643
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=390.33 Aligned_cols=248 Identities=28% Similarity=0.355 Sum_probs=205.1
Q ss_pred ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHH
Q 039265 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHV 181 (708)
Q Consensus 102 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThV 181 (708)
+|..+++|+||+|||||+|||.+||+|.+..... ...+... .....|..+|||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~--------------------~~~~~~~-----~~~~~~~~gHGT~V 56 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP--------------------LFTYAAA-----ACQDGGASAHGTHV 56 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc--------------------ccCcccc-----CCCCCCCCCcHHHH
Confidence 7999999999999999999999999998642221 0111100 23456778999999
Q ss_pred HHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCC-CCCCCH
Q 039265 182 AGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDS 260 (708)
Q Consensus 182 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-~~~~~~ 260 (708)
||||+|+... .+.||||+|+|+.+|++.....++...++++||+||+++|++|||||||.... ......
T Consensus 57 Agii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~ 126 (267)
T cd07476 57 ASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPI 126 (267)
T ss_pred HHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHH
Confidence 9999987421 24799999999999999766223457789999999999999999999997542 234567
Q ss_pred HHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEE
Q 039265 261 IAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVY 340 (708)
Q Consensus 261 ~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (708)
+..++.++.++|+++|+||||+|.....+++..|++|+||+...
T Consensus 127 l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------ 170 (267)
T cd07476 127 LANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD------------------------------------ 170 (267)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC------------------------------------
Confidence 78888889999999999999999888888888999999998521
Q ss_pred ecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHH
Q 039265 341 AGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDA 420 (708)
Q Consensus 341 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 420 (708)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceee
Q 039265 421 GLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNI 500 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 500 (708)
.+.++.||+||+.. .||||+|||.+|+++.+. +.|..
T Consensus 171 -----------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---------~~~~~ 207 (267)
T cd07476 171 -----------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---------GEVVR 207 (267)
T ss_pred -----------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC---------CCeEE
Confidence 12456789999864 488999999999999876 78999
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCC----CCHHHHHHHHHcccccccc
Q 039265 501 MSGTSMACPHLSGIAALLKSSHPY----WSPAAIKSALMTTADLLNM 543 (708)
Q Consensus 501 ~sGTSmAaP~VAG~aALl~q~~p~----~s~~~vk~~L~~TA~~~~~ 543 (708)
++|||||||||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 208 ~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 208 RSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999999999887 8999999999999999854
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=390.55 Aligned_cols=282 Identities=41% Similarity=0.576 Sum_probs=217.7
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC----------CCCCCCCCCCh
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG----------TEPPIDVDGHG 178 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~----------~~~~~d~~gHG 178 (708)
|+||+|||||+|||++||+|.+.. .++.++...++|........ .....|..+||
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HG 65 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHG 65 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------CCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcH
Confidence 899999999999999999998532 12344555556654321110 11245689999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN 258 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~ 258 (708)
|||||+|+|...+ ...+.|+||+|+|+.+|++.... .+...+++++|+|+++++++|||||||..... ..
T Consensus 66 T~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~-~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~~ 135 (295)
T cd07474 66 THVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG-SGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-PD 135 (295)
T ss_pred HHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CC
Confidence 9999999988532 22358999999999999997441 37888999999999999999999999976432 35
Q ss_pred CHHHHHHHHHHhcCceEEEecCCCCCCCCcc--cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCce
Q 039265 259 DSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI--SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPL 336 (708)
Q Consensus 259 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (708)
..+..++.++.++|+++|+||||+|...... ++..+++|+||++.....
T Consensus 136 ~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------------------- 186 (295)
T cd07474 136 DPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------------------- 186 (295)
T ss_pred CHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------------------
Confidence 6777888899999999999999998765443 577899999998631000
Q ss_pred eEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEE
Q 039265 337 PLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHV 416 (708)
Q Consensus 337 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i 416 (708)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCC-CCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCC
Q 039265 417 SNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSR-GPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPK 495 (708)
Q Consensus 417 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~ 495 (708)
........|+++ |++. ..++||||+|||++|+++++.. .
T Consensus 187 -------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~-------~ 226 (295)
T cd07474 187 -------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS-------G 226 (295)
T ss_pred -------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC-------C
Confidence 001133344454 4544 5789999999999999998753 2
Q ss_pred cceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCC
Q 039265 496 SIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571 (708)
Q Consensus 496 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 571 (708)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 227 ~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 679999999999999999999999999999999999999999998765432 223557999999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=379.85 Aligned_cols=236 Identities=30% Similarity=0.394 Sum_probs=194.2
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
|+|||||||||.+||+|.++.. ..+++. .....|..+|||||||||+|....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------~~~~~~-------~~~~~~~~~HGT~vAgiia~~~~~ 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------ARLFFA-------GPGAPAPSAHGTAVASLLAGAGAQ 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------ccccCC-------CCCCCCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999975421 111222 124567899999999999987421
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGD--VDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~--~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
. .|+||+|+|+.+|++.... ..++..++++||+||++.|++|||||||+.. ...+..++.++.
T Consensus 53 ----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~ 117 (239)
T cd05561 53 ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAA 117 (239)
T ss_pred ----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHH
Confidence 1 6999999999999998641 1267788999999999999999999999753 346677778899
Q ss_pred hcCceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCC
Q 039265 270 QKGIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPE 348 (708)
Q Consensus 270 ~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (708)
++|+++|+||||+|... ..+++..+++|+||+.+.
T Consensus 118 ~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------------------------------- 153 (239)
T cd05561 118 ARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------------------------------- 153 (239)
T ss_pred HCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------------------------------
Confidence 99999999999999763 456788899999998421
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHH
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYI 428 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 428 (708)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhH
Q 039265 429 NSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMAC 508 (708)
Q Consensus 429 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 508 (708)
.+.++.||++|+.. ||+|||.+|+++.+. +.|..++||||||
T Consensus 154 ---------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~Aa 195 (239)
T cd05561 154 ---------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAA 195 (239)
T ss_pred ---------------------CCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHH
Confidence 12567899999876 999999999998765 7899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCC
Q 039265 509 PHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAG 564 (708)
Q Consensus 509 P~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 564 (708)
|||||++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 196 P~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 196 PFVTAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 999999999999999 9999999999999998743 3466789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=383.06 Aligned_cols=254 Identities=28% Similarity=0.404 Sum_probs=187.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCC------CCCce--eEeeeecccCCC--------C--------
Q 039265 110 KGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS------TCNNK--LIGARTFNIEGN--------V-------- 165 (708)
Q Consensus 110 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~------~~~~k--v~g~~~~~~~~~--------~-------- 165 (708)
|+|+|||||||||++||+|++. .|.+..+.. ..|.. -+.+++|....+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 232221110 00110 123444442110 0
Q ss_pred --CCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCc
Q 039265 166 --KGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVD 243 (708)
Q Consensus 166 --~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~d 243 (708)
.....+.+..+|||||||||+|...+ ..| +.||||+|+|+.+|++... .....++++||+||+++|++
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n-------~~g-~~GvAp~a~i~~~k~~~~g--~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDN-------GIG-IDGVADNVKIMPLRIVPNG--DERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCC-------CCc-eEEECCCCEEEEEEEecCC--CcCHHHHHHHHHHHHHCCCc
Confidence 00223456899999999999988532 222 4899999999999998654 46778899999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCc---cc--------CCCCceEEEcccccCcceEEEE
Q 039265 244 VLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST---IS--------NEAPWILTVGASTLDRSIVATA 312 (708)
Q Consensus 244 VIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~ 312 (708)
|||||||..... ....+..++.++.++|+++|+||||+|..... ++ ...+++|+||+....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975322 23456777788899999999999999864321 11 123556666653210
Q ss_pred EcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEE
Q 039265 313 KLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAM 392 (708)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~ 392 (708)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCc
Q 039265 393 ILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPD 472 (708)
Q Consensus 393 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPD 472 (708)
.....++.||++|+. +||
T Consensus 216 -------------------------------------------------------~~~~~~~~~Sn~G~~-------~vd 233 (291)
T cd07483 216 -------------------------------------------------------YENNLVANFSNYGKK-------NVD 233 (291)
T ss_pred -------------------------------------------------------CCcccccccCCCCCC-------ceE
Confidence 001147889999974 459
Q ss_pred eeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 473 IIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 473 I~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
|+|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 234 i~APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 234 VFAPGERIYSTTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEeCCCCeEeccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99999999999876 78999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=377.84 Aligned_cols=244 Identities=30% Similarity=0.417 Sum_probs=198.0
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC-CCCCCChHHHHHHhhcCc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP-IDVDGHGTHVAGTAAGAF 189 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~-~d~~gHGThVAGiiag~~ 189 (708)
||+|||||||||++||+|..... ..+.++.+.++|.... ... .|..+|||||||||+|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------~~~~~i~~~~~~~~~~-----~~~~~~~~~HGT~vagiia~~~ 61 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------FKNLRILGEYDFVDNS-----NNTNYTDDDHGTAVLSTMAGYT 61 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------ccCCceeeeecCccCC-----CCCCCCCCCchhhhheeeeeCC
Confidence 79999999999999999952110 1234677778887642 223 678999999999999874
Q ss_pred ccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCC-----------
Q 039265 190 VKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFF----------- 257 (708)
Q Consensus 190 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~----------- 257 (708)
. +.+.||||+|+|+.+|+....... .....++.|++|+.+.|++|||||||.......
T Consensus 62 ~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~ 131 (261)
T cd07493 62 P----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDG 131 (261)
T ss_pred C----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccc
Confidence 2 235899999999999987643112 345678999999999999999999997642211
Q ss_pred -CCHHHHHHHHHHhcCceEEEecCCCCCC---CCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCC
Q 039265 258 -NDSIAVGSFAAIQKGIFVSCAAGNSGPF---NSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333 (708)
Q Consensus 258 -~~~~~~a~~~a~~~Gv~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (708)
...+..++.++.++|+++|+||||+|.. ...+++..+++|+||+..
T Consensus 132 ~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------------------ 181 (261)
T cd07493 132 KTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------------------ 181 (261)
T ss_pred cchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec------------------------------
Confidence 2356778888899999999999999987 356678889999999841
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccce
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 413 (708)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCC
Q 039265 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTN 493 (708)
Q Consensus 414 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~ 493 (708)
..+.++.||++||+. ++++||||+|||.+|++....
T Consensus 182 -----------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~------- 217 (261)
T cd07493 182 -----------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------- 217 (261)
T ss_pred -----------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------
Confidence 112577899999987 689999999999999986554
Q ss_pred CCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 494 PKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 494 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 --~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 --GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred --CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=377.26 Aligned_cols=247 Identities=33% Similarity=0.417 Sum_probs=195.5
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
|+||+|||||+|||++||+|.+. |+.... ..+...+.+.+..+. ...+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~-----~~~~~~~~~~d~~~~--~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG-----GSADHDYNWFDPVGN--TPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC-----CCcccccccccCCCC--CCCCCCCCCchhhhhhheeec
Confidence 89999999999999999999864 111000 000001111110000 245567899999999999987
Q ss_pred cccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH------------CCCcEEEEccCCCCCCC
Q 039265 189 FVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE------------DGVDVLSISIGGGSVPF 256 (708)
Q Consensus 189 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~------------~g~dVIn~S~G~~~~~~ 256 (708)
... .+ ..||||+|+|+.+|++... ++...+++++++++++ .+++|||||||....
T Consensus 66 ~~~--------~~-~~GvAp~a~i~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~-- 132 (264)
T cd07481 66 DGD--------GQ-QIGVAPGARWIACRALDRN--GGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG-- 132 (264)
T ss_pred CCC--------CC-ceEECCCCeEEEEEeecCC--CCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--
Confidence 421 11 2799999999999999877 6788899999999875 789999999998643
Q ss_pred CCCHHHHHHHHHHhcCceEEEecCCCCCCCCc---ccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCC
Q 039265 257 FNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST---ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333 (708)
Q Consensus 257 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (708)
....+..++..+.++|++||+||||++..... +++..+++|+||+.+.
T Consensus 133 ~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------- 183 (264)
T cd07481 133 DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR----------------------------- 183 (264)
T ss_pred CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------------------
Confidence 34556666778889999999999999865433 5677889999998521
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccce
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 413 (708)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCC
Q 039265 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTN 493 (708)
Q Consensus 414 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~ 493 (708)
.+.++.||++||.. .++.||||+|||.+|+++.+.
T Consensus 184 ------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------- 218 (264)
T cd07481 184 ------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------- 218 (264)
T ss_pred ------------------------------------CCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------
Confidence 12678899999998 479999999999999999876
Q ss_pred CCcceeeccchhhhHHHHHHHHHHHHhcCCC--CCHHHHHHHHHcccc
Q 039265 494 PKSIFNIMSGTSMACPHLSGIAALLKSSHPY--WSPAAIKSALMTTAD 539 (708)
Q Consensus 494 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--~s~~~vk~~L~~TA~ 539 (708)
+.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 --~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 --GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred --CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=379.03 Aligned_cols=328 Identities=30% Similarity=0.434 Sum_probs=257.9
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccC---CCCC------------CccEEEec--c-eeEEEEEEcCHHH
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLES---SDVQ------------QRPFYSYK--N-VISGFAAKLTEEE 64 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~------------~~v~~~y~--~-~~~g~sv~~~~~~ 64 (708)
.++|||.|++......+ +.|.+|+++..+..... ++.- ..+.+.|. . +|+|..-.++.+-
T Consensus 80 ~~~YiV~f~~~~~q~~~--s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 80 PSRYIVVFKPDASQQKI--SAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccceEEEeCCCccHHHH--HhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 57899999966655555 78888877665533221 0111 11344443 3 7899999999999
Q ss_pred HHHHhcCCCeEEEEeceeecccc-----cCCCcccccccCCc-------cc----ccCCCCCccEEEEEcCCCCCCCCCC
Q 039265 65 VQDMKKKNGFVSARPERKVRLQT-----THSPSFLGLHQGMG-------VW----KESNFGKGVIIGILDGGINPDHPSF 128 (708)
Q Consensus 65 i~~L~~~~~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~g~~G~Gv~VaVIDtGid~~Hp~f 128 (708)
+..++..|-++.++++..+.... .+....|||.++.. .| .+-..|+||...|+||||+..||+|
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999988776644 33444577655321 12 1233799999999999999999999
Q ss_pred CCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecC
Q 039265 129 SDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAP 208 (708)
Q Consensus 129 ~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP 208 (708)
.++ +.| |+ .+.. .....|++||||||||+|+++. .|||.
T Consensus 238 egR------a~w--------------Ga-~i~~------~~~~~D~nGHGTH~AG~I~sKt--------------~GvAK 276 (501)
T KOG1153|consen 238 EGR------AIW--------------GA-TIPP------KDGDEDCNGHGTHVAGLIGSKT--------------FGVAK 276 (501)
T ss_pred ccc------eec--------------cc-ccCC------CCcccccCCCcceeeeeeeccc--------------ccccc
Confidence 976 334 11 1111 2356789999999999999985 79999
Q ss_pred CCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC---------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEe
Q 039265 209 YAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED---------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCA 278 (708)
Q Consensus 209 ~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~A 278 (708)
+++|+++||+.++ | +..+++++++|++++. +..|.|||+|+..+ -++..|+.+|.+.|+++++|
T Consensus 277 ~s~lvaVKVl~~d--GsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~A~~~Gi~fa~A 350 (501)
T KOG1153|consen 277 NSNLVAVKVLRSD--GSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNAASERGIHFAVA 350 (501)
T ss_pred ccceEEEEEeccC--CcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHHHhhcCeEEEEc
Confidence 9999999999998 7 8999999999999986 47899999999743 46777888999999999999
Q ss_pred cCCCCCCCCcc-cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCC
Q 039265 279 AGNSGPFNSTI-SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSL 357 (708)
Q Consensus 279 AGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 357 (708)
|||+..+.+.+ |+.+..+|||||++.
T Consensus 351 AGNe~eDAC~~SPass~~aITVGAst~----------------------------------------------------- 377 (501)
T KOG1153|consen 351 AGNEHEDACNSSPASSKKAITVGASTK----------------------------------------------------- 377 (501)
T ss_pred CCCcchhhhccCcccccccEEeccccc-----------------------------------------------------
Confidence 99999887655 688999999999732
Q ss_pred CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEE
Q 039265 358 SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMAT 437 (708)
Q Consensus 358 ~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 437 (708)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHH
Q 039265 438 IIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAAL 517 (708)
Q Consensus 438 i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 517 (708)
.+.+|.||+||+|. ||.|||.+|+|+|.+.. ....++||||||+|||||++|.
T Consensus 378 ------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-------~at~ilSGTSMasPhvaG~aAy 430 (501)
T KOG1153|consen 378 ------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-------NATAILSGTSMASPHVAGLAAY 430 (501)
T ss_pred ------------ccchhhhcCcccee--------eeecCchhhhhhhhcCc-------cchheeecccccCcchhhhHHH
Confidence 23789999999999 99999999999998743 5778999999999999999999
Q ss_pred HHhcCCC---------CCHHHHHHHHHcccc
Q 039265 518 LKSSHPY---------WSPAAIKSALMTTAD 539 (708)
Q Consensus 518 l~q~~p~---------~s~~~vk~~L~~TA~ 539 (708)
.++.+|. .+|.++|..++.-..
T Consensus 431 ~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 431 FLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999883 378888887776544
|
|
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=380.46 Aligned_cols=222 Identities=30% Similarity=0.354 Sum_probs=166.5
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++..... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999998422 2235899999999999998654211 23457999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHH-HHhcCceEEEecCCCCCCCCcc--cC-CCCceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 251 GGSVPFFNDSIAVGSFA-AIQKGIFVSCAAGNSGPFNSTI--SN-EAPWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
..........+..++.+ +.++|+++|+||||+|+...+. ++ ..+++|+|||.......... |
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------y 319 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------Y 319 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------c
Confidence 86432222233444444 3469999999999999876654 33 57899999996321110000 0
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
.
T Consensus 320 -------------------------~------------------------------------------------------ 320 (412)
T cd04857 320 -------------------------S------------------------------------------------------ 320 (412)
T ss_pred -------------------------c------------------------------------------------------
Confidence 0
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecC
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFE 486 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~ 486 (708)
......+.++.||||||+. +|++||||+|||++|.+.-..
T Consensus 321 --------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~ 360 (412)
T cd04857 321 --------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW 360 (412)
T ss_pred --------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccC
Confidence 0001123688999999998 799999999999999875221
Q ss_pred CCCCCCCCCcceeeccchhhhHHHHHHHHHHHHh----cCCCCCHHHHHHHHHcccccc
Q 039265 487 PLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKS----SHPYWSPAAIKSALMTTADLL 541 (708)
Q Consensus 487 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~vk~~L~~TA~~~ 541 (708)
. ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 ~-------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 T-------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred C-------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 1 16789999999999999999999975 578999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=370.64 Aligned_cols=256 Identities=36% Similarity=0.527 Sum_probs=204.4
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
|+||+|+|||+|||++||+|.+.... ...+.... .......|..+|||||||||+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------~~~~~~~~--~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------FADFVNTV--NGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------cccccccc--cCCCCCCCCCCchHHHHHHHhcC
Confidence 89999999999999999999865221 11111100 00345667889999999999998
Q ss_pred cccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC----CCcEEEEccCCCCC-CCCCCHHH
Q 039265 189 FVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED----GVDVLSISIGGGSV-PFFNDSIA 262 (708)
Q Consensus 189 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~S~G~~~~-~~~~~~~~ 262 (708)
.... .+.+.||||+|+|+.+|+++.. + ....++++||+|+++. +++|||||||.... ......+.
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~~~--~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~ 128 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLDDS--GSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLC 128 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeecCC--CCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHH
Confidence 5321 2335899999999999999876 5 6778899999999998 99999999998643 44567888
Q ss_pred HHHHHHHhcCceEEEecCCCCCCCC--cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEE
Q 039265 263 VGSFAAIQKGIFVSCAAGNSGPFNS--TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVY 340 (708)
Q Consensus 263 ~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (708)
.++.++.++|+++|+||||++.... ..++..+++|+||+...+..
T Consensus 129 ~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------- 175 (264)
T cd07487 129 QAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------------- 175 (264)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------------------
Confidence 8888999999999999999998775 55778899999998632110
Q ss_pred ecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHH
Q 039265 341 AGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDA 420 (708)
Q Consensus 341 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 420 (708)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceee
Q 039265 421 GLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNI 500 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 500 (708)
....++.||++||+. ++++||||+|||.+|++..+..........+.|..
T Consensus 176 ----------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~ 225 (264)
T cd07487 176 ----------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFE 225 (264)
T ss_pred ----------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEe
Confidence 001578899999998 68999999999999999755322112223378999
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 501 MSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 501 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 226 ~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 226 MSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=372.81 Aligned_cols=264 Identities=27% Similarity=0.370 Sum_probs=201.7
Q ss_pred cccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHH
Q 039265 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTH 180 (708)
Q Consensus 101 ~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGTh 180 (708)
++|..+++|+||+|+|||||||++||+|.+..... .++ .....+.+..... .......|..|||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~---~~~----------~~~~~~~~~~~~~-~~~~~~~~~~gHGT~ 66 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD---GYD----------PAVNGYNFVPNVG-DIDNDVSVGGGHGTH 66 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC---Ccc----------cccCCcccccccC-CcCCCCCCCCCCHHH
Confidence 37999999999999999999999999999751110 000 0000111110000 002345678899999
Q ss_pred HHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCH
Q 039265 181 VAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDS 260 (708)
Q Consensus 181 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~ 260 (708)
|||||+|...+....-|. ..+.|+||+|+|+.+|++.... .....+++++|+||++.|++|||||||......+...
T Consensus 67 VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~-~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 67 VAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRY-YVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCC-CccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 999999875332211111 1235699999999999998751 2677889999999999999999999998754445566
Q ss_pred HHHHHHHHHhc-------CceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCC
Q 039265 261 IAVGSFAAIQK-------GIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333 (708)
Q Consensus 261 ~~~a~~~a~~~-------Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (708)
+..++..+.++ |+++|+||||++.....+++..+++|+||+.+.
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------------------- 194 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------------------- 194 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------------------
Confidence 77777788888 999999999999888777888899999998521
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccce
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 413 (708)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCC-cEEeeecCCCCCCC
Q 039265 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGL-SILAAWFEPLDFNT 492 (708)
Q Consensus 414 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~-~I~sa~~~~~~~~~ 492 (708)
.+.++.||++|+.. ||+|||. .|+++.+... .
T Consensus 195 ------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~---~ 227 (273)
T cd07485 195 ------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD---G 227 (273)
T ss_pred ------------------------------------CCCcCccccCCCce--------EEEeCCCCcccccccccc---C
Confidence 12567899999876 9999999 9998876521 1
Q ss_pred CCCcceeeccchhhhHHHHHHHHHHHHhcCCC-CCHHHHHHHHHcc
Q 039265 493 NPKSIFNIMSGTSMACPHLSGIAALLKSSHPY-WSPAAIKSALMTT 537 (708)
Q Consensus 493 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~s~~~vk~~L~~T 537 (708)
...+.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 228 ~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 12267999999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=364.44 Aligned_cols=232 Identities=38% Similarity=0.536 Sum_probs=196.8
Q ss_pred ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHH
Q 039265 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHV 181 (708)
Q Consensus 102 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThV 181 (708)
+|..+++|+||+|||||+||+++||+|.++ +...++|... ....|..+|||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------~~~~~~~~~~------~~~~d~~~HGT~v 69 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------AIWGADFVGG------DPDSDCNGHGTHV 69 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------eeeeeecCCC------CCCCCCCccHHHH
Confidence 677889999999999999999999999754 2223344432 2367889999999
Q ss_pred HHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC-----CCcEEEEccCCCCCC
Q 039265 182 AGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED-----GVDVLSISIGGGSVP 255 (708)
Q Consensus 182 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~-----g~dVIn~S~G~~~~~ 255 (708)
||||+|.. .||||+|+|+.+|+++.. + ...++++++++|+++. +++|||||||...
T Consensus 70 Agiia~~~--------------~GvAp~a~i~~~~i~~~~--~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-- 131 (255)
T cd04077 70 AGTVGGKT--------------YGVAKKANLVAVKVLDCN--GSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-- 131 (255)
T ss_pred HHHHHccc--------------cCcCCCCeEEEEEEeCCC--CCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--
Confidence 99999863 699999999999999876 4 6778899999999987 4899999999864
Q ss_pred CCCCHHHHHHHHHHhcCceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCC
Q 039265 256 FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQT 334 (708)
Q Consensus 256 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (708)
...+..++.++.++|+++|+||||+|... ..+++..+++|+||+.+.
T Consensus 132 --~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------------------ 179 (255)
T cd04077 132 --STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------------------ 179 (255)
T ss_pred --CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC------------------------------
Confidence 45677777889999999999999999776 455788899999998521
Q ss_pred ceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceE
Q 039265 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPAT 414 (708)
Q Consensus 335 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~ 414 (708)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCC
Q 039265 415 HVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNP 494 (708)
Q Consensus 415 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~ 494 (708)
.+.++.||++||.. ||+|||.+|.++.....
T Consensus 180 -----------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~------ 210 (255)
T cd04077 180 -----------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD------ 210 (255)
T ss_pred -----------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC------
Confidence 12467899999987 99999999999886422
Q ss_pred CcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccc
Q 039265 495 KSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADL 540 (708)
Q Consensus 495 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~ 540 (708)
+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 211 -~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 211 -TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 789999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=363.93 Aligned_cols=241 Identities=34% Similarity=0.492 Sum_probs=203.7
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+..+|..+ +|+||+|||||+||+++||+|... ++...+++... ...+.|..+||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------~~~~~~~~~~~-----~~~~~d~~~HG 71 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------KFVLGYDFVDN-----DSDAMDDNGHG 71 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------CcccceeccCC-----CCCCCCCCCcH
Confidence 45689988 999999999999999999998432 22333444433 23466789999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFF 257 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~ 257 (708)
|||||||++..... ..+.|+||+|+|+.+|+++.. + +...+++++|+++++.+++|||||||... .
T Consensus 72 T~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~--~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~ 138 (260)
T cd07484 72 THVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDAN--GSGSLADIANGIRYAADKGAKVINLSLGGGL---G 138 (260)
T ss_pred HHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCC--CCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---C
Confidence 99999999874221 224899999999999999875 4 67888999999999999999999999863 4
Q ss_pred CCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCcee
Q 039265 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLP 337 (708)
Q Consensus 258 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (708)
...+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 139 ~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------- 185 (260)
T cd07484 139 STALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ--------------------------------- 185 (260)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC---------------------------------
Confidence 45677777888899999999999999988889999999999998521
Q ss_pred EEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEc
Q 039265 338 LVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVS 417 (708)
Q Consensus 338 ~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 417 (708)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcc
Q 039265 418 NDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSI 497 (708)
Q Consensus 418 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 497 (708)
.+.++.||++|+.. |++|||.+|+++.+. +.
T Consensus 186 --------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~ 216 (260)
T cd07484 186 --------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GD 216 (260)
T ss_pred --------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CC
Confidence 12567889999876 999999999998876 78
Q ss_pred eeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccccc
Q 039265 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541 (708)
Q Consensus 498 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~ 541 (708)
|..++|||||||+|||++|||++++| +++++||++|++||+++
T Consensus 217 ~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 217 YAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred EEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=358.75 Aligned_cols=253 Identities=34% Similarity=0.487 Sum_probs=189.3
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFV 190 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 190 (708)
||+|||||+|||++||+|.+.- ....+|....... .....|..+|||||||||+|+..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------~~~~~~~~~~~~~-~~~~~d~~~HGT~vAgiia~~~~ 58 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------AQWADFDENRRIS-ATEVFDAGGHGTHVSGTIGGGGA 58 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------CCceeccCCCCCC-CCCCCCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999997541 1122232110000 34556788999999999999853
Q ss_pred cCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHh
Q 039265 191 KNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQ 270 (708)
Q Consensus 191 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~ 270 (708)
++.+.||||+|+|+.+|++... ++...+++++|+|+++.+++|||||||..... ...+..++....+
T Consensus 59 ---------~~~~~GvAp~a~i~~~~v~~~~--~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~ 125 (254)
T cd07490 59 ---------KGVYIGVAPEADLLHGKVLDDG--GGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSN 125 (254)
T ss_pred ---------CCCEEEECCCCEEEEEEEecCC--CCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHH
Confidence 2234799999999999999877 67889999999999999999999999986433 4556555555554
Q ss_pred -cCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCC
Q 039265 271 -KGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPES 349 (708)
Q Consensus 271 -~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (708)
+|++||+||||+|.....+++..+++|+||+.+....... +.
T Consensus 126 ~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s-------- 168 (254)
T cd07490 126 QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS-------- 168 (254)
T ss_pred cCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc--------
Confidence 6999999999999888888889999999999643221000 00
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHh
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
.++
T Consensus 169 --------------------~~g--------------------------------------------------------- 171 (254)
T cd07490 169 --------------------SFG--------------------------------------------------------- 171 (254)
T ss_pred --------------------CCc---------------------------------------------------------
Confidence 000
Q ss_pred cCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHH
Q 039265 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP 509 (708)
Q Consensus 430 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP 509 (708)
.......+.+|... ....|||++|||.+|+++... ....+.|..++|||||||
T Consensus 172 ---------------------~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~-----~~~~~~~~~~~GTS~AaP 224 (254)
T cd07490 172 ---------------------SSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQG-----ANGDGQYTRLSGTSMAAP 224 (254)
T ss_pred ---------------------ccccccccCCCCCc-cCCcCceEEeccCCeEccccC-----CCCCCCeeecccHHHHHH
Confidence 01112233344332 357899999999999985422 112378999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 510 HLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 510 ~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+|||++|||+|++|+|++++||++|++||+
T Consensus 225 ~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 225 HVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=371.27 Aligned_cols=261 Identities=25% Similarity=0.235 Sum_probs=187.2
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
.+|||||||||.+||+|.+.- .....+... .....|..||||||||||++....
T Consensus 1 p~VaviDtGi~~~hp~l~~~~---------------------~~~~~~~~~-----~~~~~d~~gHGT~vAgiia~~~~~ 54 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL---------------------AEDDLDSDE-----PGWTADDLGHGTAVAGLALYGDLT 54 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh---------------------ccccccccC-----CCCcCCCCCChHHHHHHHHcCccc
Confidence 379999999999999998541 111112211 112578999999999999976422
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCC---CCCCHHHHHHHHHHHHHCC---CcEEEEccCCCCCCCC--CCHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGD---VDCTESDLLAGLDAAIEDG---VDVLSISIGGGSVPFF--NDSIAV 263 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~---~g~~~~~i~~ai~~a~~~g---~dVIn~S~G~~~~~~~--~~~~~~ 263 (708)
.....|+||+++|+.+|++.... ......++++||+|+++++ ++|||||||....... ...+..
T Consensus 55 --------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~ 126 (291)
T cd04847 55 --------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAA 126 (291)
T ss_pred --------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHH
Confidence 11237999999999999998761 1256678999999999864 4999999998643211 124444
Q ss_pred HHHH-HHhcCceEEEecCCCCCCCCc------------ccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 264 GSFA-AIQKGIFVSCAAGNSGPFNST------------ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 264 a~~~-a~~~Gv~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
++.+ +.++|++||+||||++..... .++.++++|+|||.+........ +.
T Consensus 127 ~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------------s~----- 189 (291)
T cd04847 127 ALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------------AR----- 189 (291)
T ss_pred HHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------------cc-----
Confidence 4433 458999999999999987643 35667899999997443210000 00
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
.+
T Consensus 190 ----------------------------------------~~-------------------------------------- 191 (291)
T cd04847 190 ----------------------------------------YS-------------------------------------- 191 (291)
T ss_pred ----------------------------------------cc--------------------------------------
Confidence 00
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCC--
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPL-- 488 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~-- 488 (708)
.......+.||||||.. ++.+||||+|||++|.+..+...
T Consensus 192 ------------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~ 233 (291)
T cd04847 192 ------------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAAD 233 (291)
T ss_pred ------------------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCcc
Confidence 00001233499999998 68999999999999987543210
Q ss_pred -------CCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 489 -------DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 489 -------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
.........|..++|||||||||||+||||+|++|+++|++||++|++||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 011223478999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=361.63 Aligned_cols=252 Identities=25% Similarity=0.334 Sum_probs=184.2
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+..+|+++++|+||+||||||||+..|| |..+++. + + ..+..+. .....|+.|||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------~----~~~~~~~----~~~~~D~~gHG 64 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------R----VVLAPGA----TDPACDENGHG 64 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------e----eecCCCC----CCCCCCCCCcc
Confidence 4569999999999999999999999888 6543221 0 0 0111110 23456788999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC---
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP--- 255 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--- 255 (708)
|||||++ .||||+|+|+.+|+++. ...++++||+||++++++|||||||.....
T Consensus 65 T~vag~i------------------~GvAP~a~i~~vkv~~~-----~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 121 (298)
T cd07494 65 TGESANL------------------FAIAPGAQFIGVKLGGP-----DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGT 121 (298)
T ss_pred hheeece------------------eEeCCCCeEEEEEccCC-----CcHHHHHHHHHHHhcCCCEEEeecccCCCCccc
Confidence 9999865 69999999999999853 346789999999999999999999975321
Q ss_pred -------CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCC
Q 039265 256 -------FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQP 328 (708)
Q Consensus 256 -------~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (708)
.....+..++.+|.++|++||+||||++. .+|+..|++|+||++..+.. +..
T Consensus 122 ~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~--------- 180 (298)
T cd07494 122 SWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR--------- 180 (298)
T ss_pred ccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc---------
Confidence 12345778888899999999999999874 57899999999999632210 000
Q ss_pred CCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCC
Q 039265 329 KDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADP 408 (708)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~ 408 (708)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCce---------------
Q 039265 409 HVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI--------------- 473 (708)
Q Consensus 409 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI--------------- 473 (708)
......+.|+|. . .+++.|||+
T Consensus 181 ---------------------------------------~~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~~~ 217 (298)
T cd07494 181 ---------------------------------------RASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYLML 217 (298)
T ss_pred ---------------------------------------cccccccCcccc--c--CCCCccCccccccCcCCccccccc
Confidence 000001111111 1 145677776
Q ss_pred -eeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccccccc
Q 039265 474 -IGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNM 543 (708)
Q Consensus 474 -~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~ 543 (708)
+|||..|.++..... ......+.|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 218 ~~APG~~i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 218 PVPPGSQLDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred ccCCCcceeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 479999976543210 011123789999999999999999999999999999999999999999997743
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=362.97 Aligned_cols=279 Identities=30% Similarity=0.342 Sum_probs=201.5
Q ss_pred cCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHH
Q 039265 105 ESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGT 184 (708)
Q Consensus 105 ~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGi 184 (708)
++++|+||+|||||+|||++||+|.+.... ... ...+++.....+.. ...|..+||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~--------~~~--~~~~~~~~~~~~~~--------~~~d~~~HGT~vAgi 63 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN--------KTN--LFHRKIVRYDSLSD--------TKDDVDGHGTHVAGI 63 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC--------cCc--cCcccEEEeeccCC--------CCCCCCCCcchhhee
Confidence 588999999999999999999999754210 000 12334444433332 223889999999999
Q ss_pred hhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHH
Q 039265 185 AAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264 (708)
Q Consensus 185 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a 264 (708)
|+|....... ...+.|+||+|+|+.+|++..........++..+++++.+.+++|||||||...... ......+
T Consensus 64 ia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~~ 137 (293)
T cd04842 64 IAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG-YTLLARA 137 (293)
T ss_pred eccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-cchHHHH
Confidence 9998633211 013489999999999999887611155667889999999999999999999875321 2233334
Q ss_pred HHHHH-h-cCceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEE
Q 039265 265 SFAAI-Q-KGIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLV 339 (708)
Q Consensus 265 ~~~a~-~-~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (708)
+.++. + +|+++|+||||+|.... ..++..+++|+|||++......
T Consensus 138 ~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------------ 187 (293)
T cd04842 138 YDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------------------------ 187 (293)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------------------------
Confidence 43333 3 89999999999998765 6678899999999974332100
Q ss_pred EecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHH
Q 039265 340 YAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSND 419 (708)
Q Consensus 340 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 419 (708)
...|..
T Consensus 188 ---------~~~~~~----------------------------------------------------------------- 193 (293)
T cd04842 188 ---------GEGGLG----------------------------------------------------------------- 193 (293)
T ss_pred ---------cccccc-----------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCccee
Q 039265 420 AGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFN 499 (708)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~ 499 (708)
.....+.++.||++||+. ++++||||+|||++|+++.+............|.
T Consensus 194 --------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~ 245 (293)
T cd04842 194 --------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYT 245 (293)
T ss_pred --------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhhee
Confidence 001223789999999998 6899999999999999987442111122236899
Q ss_pred eccchhhhHHHHHHHHHHHHhcCC--------CCCHHHHHHHHHcccc
Q 039265 500 IMSGTSMACPHLSGIAALLKSSHP--------YWSPAAIKSALMTTAD 539 (708)
Q Consensus 500 ~~sGTSmAaP~VAG~aALl~q~~p--------~~s~~~vk~~L~~TA~ 539 (708)
.++|||||||+|||++|||+|++| .+++.++|++|++||+
T Consensus 246 ~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 246 SKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999999999999999999854 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=359.43 Aligned_cols=258 Identities=28% Similarity=0.351 Sum_probs=189.6
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccC-----C-CCCceeEeeeecccCC-CC--CC-CCCCCCCCCChHH
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF-----S-TCNNKLIGARTFNIEG-NV--KG-TEPPIDVDGHGTH 180 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-----~-~~~~kv~g~~~~~~~~-~~--~~-~~~~~d~~gHGTh 180 (708)
||+|||||||||++||+|.++... .|+-.... + ....+.....++..+. .. .. .....+..+||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~----g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 76 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP----GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTH 76 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc----CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHH
Confidence 799999999999999999865311 11100000 0 0000000000000000 00 00 2334567899999
Q ss_pred HHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH----------HCCCcEEEEccC
Q 039265 181 VAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAI----------EDGVDVLSISIG 250 (708)
Q Consensus 181 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~----------~~g~dVIn~S~G 250 (708)
|||||+|...+. . .+.||||+|+|+.+|+++.. +...+++++|++|++ .++++|||||||
T Consensus 77 vAgiiaa~~~~~-------~-~~~GvAp~a~i~~~~v~~~~--~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G 146 (285)
T cd07496 77 VAGTIAAVTNNG-------V-GVAGVAWGARILPVRVLGKC--GGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLG 146 (285)
T ss_pred HHHHHhCcCCCC-------C-CceeecCCCeEEEEEEecCC--CCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCC
Confidence 999999985321 1 23799999999999999877 668889999999998 457899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 251 GGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
..... ...+..++.++.++|++||+||||++... ..+++..+++|+||+.+.
T Consensus 147 ~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------------- 199 (285)
T cd07496 147 GDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------------------- 199 (285)
T ss_pred CCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-------------------------
Confidence 86432 45677788889999999999999999876 667888899999998521
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~ 489 (708)
.+.++.||++|+.. ||+|||++|.++......
T Consensus 200 ----------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~ 231 (285)
T cd07496 200 ----------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGY 231 (285)
T ss_pred ----------------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCcc
Confidence 12678899999987 999999999988754210
Q ss_pred ------CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 490 ------FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 490 ------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 232 PDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 112223578999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=350.18 Aligned_cols=240 Identities=31% Similarity=0.427 Sum_probs=190.7
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
|+|||||+|||++||+|.+.. ++...+++... ..+..|..+|||||||||+|+..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------~~~~~~~~~~~-----~~~~~~~~~HGT~vAgiiag~~~~ 56 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------KLVPGWNFVSN-----NDPTSDIDGHGTACAGVAAAVGNN 56 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------CccCCccccCC-----CCCCCCCCCCHHHHHHHHHhccCC
Confidence 689999999999999998630 01111222221 224567899999999999987522
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCC-CCCCCHHHHHHHHHHh
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDSIAVGSFAAIQ 270 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-~~~~~~~~~a~~~a~~ 270 (708)
...+.|+||+|+|+.+|++.... .+...++.++++|+++.+++|||||||.... ......+..++.++.+
T Consensus 57 --------~~~~~Gvap~a~i~~~~~~~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~ 127 (242)
T cd07498 57 --------GLGVAGVAPGAKLMPVRIADSLG-YAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRN 127 (242)
T ss_pred --------CceeEeECCCCEEEEEEEECCCC-CccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 12248999999999999997661 2678889999999999999999999997643 2345667777778888
Q ss_pred -cCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCC
Q 039265 271 -KGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPES 349 (708)
Q Consensus 271 -~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (708)
+|+++|+||||+|.....+++..+++|+||+.+.
T Consensus 128 ~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------------------- 162 (242)
T cd07498 128 GKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS--------------------------------------------- 162 (242)
T ss_pred cCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC---------------------------------------------
Confidence 9999999999999887778889999999998521
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHh
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHH
Q 039265 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP 509 (708)
Q Consensus 430 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP 509 (708)
.+.++.||++||.. |++|||.++.+.........+...+.|..++|||||||
T Consensus 163 --------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap 214 (242)
T cd07498 163 --------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASP 214 (242)
T ss_pred --------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHH
Confidence 12567899999987 99999999988743321111223378899999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 510 HLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 510 ~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
+|||++|||+|++|+|+++|||++|++|
T Consensus 215 ~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 215 VAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=358.98 Aligned_cols=265 Identities=29% Similarity=0.387 Sum_probs=185.5
Q ss_pred ccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHH
Q 039265 104 KESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAG 183 (708)
Q Consensus 104 ~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAG 183 (708)
..+++|+||+|||||+|||.+||+|.+... ...+|... ....|..+|||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------~~~~~~~~------~~~~d~~gHGT~VAg 54 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------TTKSFVGG------EDVQDGHGHGTHCAG 54 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------cCcccCCC------CCCCCCCCcHHHHHH
Confidence 357899999999999999999999986421 12334332 235678999999999
Q ss_pred HhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC--------
Q 039265 184 TAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP-------- 255 (708)
Q Consensus 184 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~-------- 255 (708)
||+|+... +...||||+|+|+.+|++.... .....++++||+||++.|++|||||||.....
T Consensus 55 iiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~-~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~ 124 (297)
T cd07480 55 TIFGRDVP---------GPRYGVARGAEIALIGKVLGDG-GGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPP 124 (297)
T ss_pred HHhcccCC---------CcccccCCCCEEEEEEEEeCCC-CCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCC
Confidence 99987532 2237999999999999997651 36677799999999999999999999975311
Q ss_pred --CCCCHHHHHHHHH---------------HhcCceEEEecCCCCCCCCccc-----CCCCceEEEcccccCcceEEEEE
Q 039265 256 --FFNDSIAVGSFAA---------------IQKGIFVSCAAGNSGPFNSTIS-----NEAPWILTVGASTLDRSIVATAK 313 (708)
Q Consensus 256 --~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~ 313 (708)
.....+......+ .++|++||+||||++....... ...++.++|++...
T Consensus 125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~--------- 195 (297)
T cd07480 125 GLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGA--------- 195 (297)
T ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECC---------
Confidence 1112233222233 6799999999999986543221 11122233322100
Q ss_pred cCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEE
Q 039265 314 LGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMI 393 (708)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i 393 (708)
T Consensus 196 -------------------------------------------------------------------------------- 195 (297)
T cd07480 196 -------------------------------------------------------------------------------- 195 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCce
Q 039265 394 LMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI 473 (708)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI 473 (708)
.+....|+++.+. ...||||
T Consensus 196 --------------------------------------------------------~~~~~~~~~~~~~----~~~~~dv 215 (297)
T cd07480 196 --------------------------------------------------------LGRTGNFSAVANF----SNGEVDI 215 (297)
T ss_pred --------------------------------------------------------CCCCCCccccCCC----CCCceEE
Confidence 0112223333322 2457899
Q ss_pred eeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCC
Q 039265 474 IGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETL 553 (708)
Q Consensus 474 ~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~ 553 (708)
+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+......... .. .
T Consensus 216 ~ApG~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~-~~-----~ 280 (297)
T cd07480 216 AAPGVDIVSAAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT-QF-----A 280 (297)
T ss_pred EeCCCCeEeecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC-CC-----C
Confidence 9999999999876 7899999999999999999999999999999988888877432221000 00 1
Q ss_pred CCCCCCccCCCCCCcC
Q 039265 554 RPADIFAIGAGHVNPS 569 (708)
Q Consensus 554 ~~~~~~~~G~G~vn~~ 569 (708)
.......+|+|++++.
T Consensus 281 ~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 281 PGLDLPDRGVGLGLAP 296 (297)
T ss_pred CCCChhhcCCceeecC
Confidence 1245678999999885
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=340.36 Aligned_cols=226 Identities=37% Similarity=0.563 Sum_probs=188.0
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFV 190 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 190 (708)
||+|||||+||+.+||+|.+. +...++|.... .....|..+|||||||||++...
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------~~~~~~~~~~~----~~~~~~~~~HGT~vA~ii~~~~~ 55 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------IVGGANFTGDD----NNDYQDGNGHGTHVAGIIAALDN 55 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------ccCcccccCCC----CCCCCCCCCCHHHHHHHHhcccC
Confidence 799999999999999999854 12223343321 13556788999999999998753
Q ss_pred cCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 191 KNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 191 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
.. .+.|+||+|+|+.+|++... + ....+++++++++++.|++|||||||... ....+..++.++.
T Consensus 56 ~~---------~~~giap~a~i~~~~~~~~~--~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~ 121 (229)
T cd07477 56 GV---------GVVGVAPEADLYAVKVLNDD--GSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAY 121 (229)
T ss_pred CC---------ccEeeCCCCEEEEEEEECCC--CCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHH
Confidence 21 24899999999999999876 5 56688999999999999999999999763 2345666777888
Q ss_pred hcCceEEEecCCCCCCCCcc--cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCC
Q 039265 270 QKGIFVSCAAGNSGPFNSTI--SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKP 347 (708)
Q Consensus 270 ~~Gv~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (708)
++|+++|+||||++...... ++..+++|+||+.+.
T Consensus 122 ~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------------------- 158 (229)
T cd07477 122 AAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS------------------------------------------- 158 (229)
T ss_pred HCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-------------------------------------------
Confidence 99999999999999877664 888999999998521
Q ss_pred CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHH
Q 039265 348 ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSY 427 (708)
Q Consensus 348 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 427 (708)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhh
Q 039265 428 INSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMA 507 (708)
Q Consensus 428 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 507 (708)
.+.++.||++|+.. |+.|||.+|+++++. +.|..++|||||
T Consensus 159 ----------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~---------~~~~~~~GTS~A 199 (229)
T cd07477 159 ----------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN---------NDYAYLSGTSMA 199 (229)
T ss_pred ----------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------CCEEEEccHHHH
Confidence 12566789999875 999999999999876 789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 508 CPHLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 508 aP~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
||+|||++|||+|++|++++.+||++|++|
T Consensus 200 ap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=345.29 Aligned_cols=249 Identities=33% Similarity=0.453 Sum_probs=190.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCC-CCcccccccCCCCCcee--EeeeecccCCCCCCCCCCCCCCCChHHHHHHhh
Q 039265 110 KGVIIGILDGGINPDHPSFSDEGMPPP-PAKWKGRCDFSTCNNKL--IGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAA 186 (708)
Q Consensus 110 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~-~~~w~~~~~~~~~~~kv--~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiia 186 (708)
+||+|||||||||++||+|.++..... ...+.+.... .+..+ ...++|... ..++.|..+|||||||||+
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~d~~~HGT~va~ii~ 74 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDD--GNGYVDDIYGWNFVNN-----DNDPMDDNGHGTHVAGIIG 74 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccC--CCCcccCCCcccccCC-----CCCCCCCCCcHHHHHHHHH
Confidence 699999999999999999997421100 0001111000 00000 011112111 3456788999999999999
Q ss_pred cCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHH
Q 039265 187 GAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGS 265 (708)
Q Consensus 187 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~ 265 (708)
|...+. ..+.|+||+|+|+.+|++... + +...+++++|+++++.+++|||+|||.... ...+..++
T Consensus 75 ~~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~ 141 (259)
T cd07473 75 AVGNNG--------IGIAGVAWNVKIMPLKFLGAD--GSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAI 141 (259)
T ss_pred CcCCCC--------CceEEeCCCCEEEEEEEeCCC--CCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHH
Confidence 885322 224899999999999999876 5 788899999999999999999999998633 56777888
Q ss_pred HHHHhcCceEEEecCCCCCCC---CcccC--CCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEE
Q 039265 266 FAAIQKGIFVSCAAGNSGPFN---STISN--EAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVY 340 (708)
Q Consensus 266 ~~a~~~Gv~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (708)
.++.++|+++|+||||+|... ..++. ..+++|+||+.+.
T Consensus 142 ~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------------------------ 185 (259)
T cd07473 142 ARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------------------------ 185 (259)
T ss_pred HHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------------------------
Confidence 899999999999999998762 34443 4578888887421
Q ss_pred ecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHH
Q 039265 341 AGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDA 420 (708)
Q Consensus 341 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 420 (708)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceee
Q 039265 421 GLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNI 500 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 500 (708)
.+.++.||++||. +||+.|||.++++..+. ..|..
T Consensus 186 -----------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~ 220 (259)
T cd07473 186 -----------------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGY 220 (259)
T ss_pred -----------------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEE
Confidence 1255678999975 46999999999997765 78999
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 501 MSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 501 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 221 ~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 221 MSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred eccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=350.19 Aligned_cols=244 Identities=23% Similarity=0.289 Sum_probs=176.8
Q ss_pred CCcccccC-CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCC
Q 039265 99 GMGVWKES-NFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGH 177 (708)
Q Consensus 99 ~~~~~~~g-~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gH 177 (708)
+..+|+.. ..|+||+|+|||+|||.+||+|.++... +.. ...+.|+.+|
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------~~~------~~~~~d~~gH 53 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------LIS------GLTDQADSDH 53 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------ccC------CCCCCCCCCC
Confidence 35589874 4599999999999999999999865211 000 1125678899
Q ss_pred hHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH----CCCcEEEEccCCCC
Q 039265 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE----DGVDVLSISIGGGS 253 (708)
Q Consensus 178 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~----~g~dVIn~S~G~~~ 253 (708)
||||||||+|.. +..| +.||||+|+|+.+|++. .++++++|++|++ .++.+||||||...
T Consensus 54 GT~VAGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~-------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~ 117 (277)
T cd04843 54 GTAVLGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR-------VSNTADAILDAADYLSPGDVILLEMQTGGPN 117 (277)
T ss_pred cchhheeeeeec--------CCCc-eeeeccCCEEEEEEecC-------CCCHHHHHHHHHhccCCCCEEEEEccccCCC
Confidence 999999999863 2223 37999999999999975 2245666666666 35678999999864
Q ss_pred CC------CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc------------c-CCCCceEEEcccccCcceEEEEEc
Q 039265 254 VP------FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI------------S-NEAPWILTVGASTLDRSIVATAKL 314 (708)
Q Consensus 254 ~~------~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~ 314 (708)
.. .....+..++.++.++|+++|+||||++...... + ...+++|+|||++.+
T Consensus 118 ~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~--------- 188 (277)
T cd04843 118 NGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST--------- 188 (277)
T ss_pred cCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC---------
Confidence 21 1233455677788899999999999998653111 1 123467777764210
Q ss_pred CCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEE
Q 039265 315 GNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMIL 394 (708)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~ 394 (708)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCcee
Q 039265 395 MNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDII 474 (708)
Q Consensus 395 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~ 474 (708)
....++.||++|+.. ||+
T Consensus 189 ------------------------------------------------------~~~~~~~fSn~G~~v--------di~ 206 (277)
T cd04843 189 ------------------------------------------------------TGHTRLAFSNYGSRV--------DVY 206 (277)
T ss_pred ------------------------------------------------------CCCccccccCCCCcc--------ceE
Confidence 001378999999976 999
Q ss_pred eCCCcEEeeecCCCC-CCCCCCcceeeccchhhhHHHHHHHHHHHHh----c-CCCCCHHHHHHHHHcccc
Q 039265 475 GPGLSILAAWFEPLD-FNTNPKSIFNIMSGTSMACPHLSGIAALLKS----S-HPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 475 APG~~I~sa~~~~~~-~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s~~~vk~~L~~TA~ 539 (708)
|||++|+++.+.... ......+.|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 207 APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 207 GWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred cCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999875321 1111123457899999999999999999974 4 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=343.13 Aligned_cols=155 Identities=23% Similarity=0.341 Sum_probs=119.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC--CCCCCCCCCChHHHHHHhh
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG--TEPPIDVDGHGTHVAGTAA 186 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~--~~~~~d~~gHGThVAGiia 186 (708)
+++|+|||||||||++||+|.++ +...++|....+... .....|..||||||||||+
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiI~ 60 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARMIC 60 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHHHH
Confidence 78999999999999999999864 112233332211100 1223578999999999995
Q ss_pred cCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCC-----CCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC---CCC
Q 039265 187 GAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV-----DCTESDLLAGLDAAIEDGVDVLSISIGGGSVP---FFN 258 (708)
Q Consensus 187 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~-----g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~---~~~ 258 (708)
|+||+|+|+.+|+++.... .++...+++||+||+++|+||||||||..... ...
T Consensus 61 ------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~ 122 (247)
T cd07491 61 ------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDI 122 (247)
T ss_pred ------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccch
Confidence 7999999999999986520 24567899999999999999999999976421 125
Q ss_pred CHHHHHHHHHHhcCceEEEecCCCCCCCC-c--ccCCCCceEEEccc
Q 039265 259 DSIAVGSFAAIQKGIFVSCAAGNSGPFNS-T--ISNEAPWILTVGAS 302 (708)
Q Consensus 259 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~--~~~~~p~vitVga~ 302 (708)
..+..++.+|.++|++||+||||+|.... . .++..+++|+|||.
T Consensus 123 ~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 123 NELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred HHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 67888888999999999999999998764 3 34677899999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=356.64 Aligned_cols=274 Identities=36% Similarity=0.516 Sum_probs=209.9
Q ss_pred EEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 113 IIGILDGGINPDHPSFS-DEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 113 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
+|||||||||++||+|. ++ + ...++.+.+.|.++.. ......|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------IWSKVPGGYNFVDGNP--NPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------EEEEEEEEEETTTTBS--TTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------ccccccceeeccCCCC--CcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 33 0 1123444556665420 02456778899999999999985 2
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH-HCCCcEEEEccCCC--C-CCCCCCHHHHHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAI-EDGVDVLSISIGGG--S-VPFFNDSIAVGSFA 267 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~-~~g~dVIn~S~G~~--~-~~~~~~~~~~a~~~ 267 (708)
.+ .....|+||+|+|+.+|++... +....+++++|++++ +.+++|||||||.. . .......+..++..
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~~~--~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~ 133 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFDNS--GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDY 133 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSSTT--SEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHH
T ss_pred -cc-----cccccccccccccccccccccc--ccccccccchhhhhhhccCCcccccccccccccccccccccccccccc
Confidence 11 1223799999999999998776 567788999999999 89999999999872 1 12233445566668
Q ss_pred HHhcCceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCC
Q 039265 268 AIQKGIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMN 344 (708)
Q Consensus 268 a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (708)
+.++|+++|+||||+|.... ..++..+++|+||+...
T Consensus 134 ~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~---------------------------------------- 173 (282)
T PF00082_consen 134 AEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN---------------------------------------- 173 (282)
T ss_dssp HHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET----------------------------------------
T ss_pred ccccCcceeecccccccccccccccccccccccccccccc----------------------------------------
Confidence 88999999999999987765 35677788999998521
Q ss_pred CCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHH
Q 039265 345 GKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKI 424 (708)
Q Consensus 345 ~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 424 (708)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccch
Q 039265 425 KSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGT 504 (708)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 504 (708)
.+.++.||++|+... ++++||||+|||.+|.+.++... ...|..++||
T Consensus 174 -------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~------~~~~~~~~GT 221 (282)
T PF00082_consen 174 -------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD------RGSYTSFSGT 221 (282)
T ss_dssp -------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE------SEEEEEEESH
T ss_pred -------------------------ccccccccccccccc-ccccccccccccccccccccccc------cccccccCcC
Confidence 115678999976543 57999999999999998886510 0347889999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 505 SMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 505 SmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
|||||+|||++|||+|++|+|++.+||.+|++||.++.... .......||||+||+.+||+
T Consensus 222 S~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 222 SFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999999986221 23456788999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=329.58 Aligned_cols=221 Identities=25% Similarity=0.305 Sum_probs=174.5
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFV 190 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 190 (708)
||+|||||||||++||+|.+.... .+.+..+..........|..||||||||||+
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia---- 55 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------GEVTIDLEIIVVSAEGGDKDGHGTACAGIIK---- 55 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------cccccccccccCCCCCCCCCCcHHHHHHHHH----
Confidence 799999999999999999864211 1111100000003455678999999999997
Q ss_pred cCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 191 KNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 191 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
+.+|+++|+.+|+++.. + +...++++||+|++++|++|||||||..... ....+..++.++.
T Consensus 56 --------------~~~p~~~i~~~~v~~~~--~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~ 118 (222)
T cd07492 56 --------------KYAPEAEIGSIKILGED--GRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAY 118 (222)
T ss_pred --------------ccCCCCeEEEEEEeCCC--CCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHH
Confidence 34699999999999876 5 7888899999999999999999999986432 2356677777888
Q ss_pred hcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCC
Q 039265 270 QKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPES 349 (708)
Q Consensus 270 ~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (708)
++|+++|+||||++.... +++..+++|+|++.....
T Consensus 119 ~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------------------- 154 (222)
T cd07492 119 KAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------------------- 154 (222)
T ss_pred HCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------------------
Confidence 899999999999987543 377788999999742110
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHh
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHH
Q 039265 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP 509 (708)
Q Consensus 430 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP 509 (708)
.. +.+++ ++|+.|||.+|+++.+. +.|..++|||||||
T Consensus 155 ----------------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap 192 (222)
T cd07492 155 ----------------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAP 192 (222)
T ss_pred ----------------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHH
Confidence 01 11132 34999999999999876 78999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 510 HLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 510 ~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+|||++|||+|++|+|+++|||++|++||+
T Consensus 193 ~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 193 HVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=343.72 Aligned_cols=247 Identities=30% Similarity=0.375 Sum_probs=174.4
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeeccc--CCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI--EGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~--~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
.|+|||||||||++||+|.+.-... .+ .+.....+.. ...........|..||||||||+|+|.
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~ 66 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK----------NLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIAAN 66 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc----------ccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHhcC
Confidence 4899999999999999998532110 00 0000000000 000000234567799999999999986
Q ss_pred cccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCC--------CCC
Q 039265 189 FVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPF--------FND 259 (708)
Q Consensus 189 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~--------~~~ 259 (708)
.. ..||||+|+|+.+|+++.. + ....+++++|++|++++++|||||||...... ...
T Consensus 67 ~~------------~~GvAp~a~i~~~~v~~~~--~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~ 132 (294)
T cd07482 67 GN------------IKGVAPGIGIVSYRVFGSC--GSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYN 132 (294)
T ss_pred CC------------CceeCCCCEEEEEEeecCC--CCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhH
Confidence 31 1599999999999999877 5 47889999999999999999999999753211 123
Q ss_pred HHHHHHHHHHhcCceEEEecCCCCCCCCc----------------------ccCCCCceEEEcccccCcceEEEEEcCCC
Q 039265 260 SIAVGSFAAIQKGIFVSCAAGNSGPFNST----------------------ISNEAPWILTVGASTLDRSIVATAKLGNR 317 (708)
Q Consensus 260 ~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~~ 317 (708)
.+..++..+.++|++||+||||+|..... +++..+++|+|||+
T Consensus 133 ~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~--------------- 197 (294)
T cd07482 133 AYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT--------------- 197 (294)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee---------------
Confidence 56667777889999999999999865421 22233344444442
Q ss_pred ceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecC
Q 039265 318 EEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMND 397 (708)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~ 397 (708)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCC
Q 039265 398 EPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPG 477 (708)
Q Consensus 398 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG 477 (708)
...+.++.||++|+.. +|++|||
T Consensus 198 --------------------------------------------------~~~~~~~~~S~~g~~~-------~~~~apG 220 (294)
T cd07482 198 --------------------------------------------------DNNGNLSSFSNYGNSR-------IDLAAPG 220 (294)
T ss_pred --------------------------------------------------CCCCCcCccccCCCCc-------ceEECCC
Confidence 1233677899998654 4999999
Q ss_pred CcEEeeecCCC---C----------CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCH-HHHHHHHHcc
Q 039265 478 LSILAAWFEPL---D----------FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSP-AAIKSALMTT 537 (708)
Q Consensus 478 ~~I~sa~~~~~---~----------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~-~~vk~~L~~T 537 (708)
+++....+... . ......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 221 GDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 98853221100 0 01133468999999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=349.57 Aligned_cols=248 Identities=25% Similarity=0.285 Sum_probs=182.0
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC--CCCCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP--IDVDG 176 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~--~d~~g 176 (708)
+..+|+.+++|+||+|+|||||||+.||+|.++... ...++|....+ ...+ .|..+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------~~~~~~~~~~~---~~~~~~~~~~g 85 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------EASYDFNDNDP---DPTPRYDDDNS 85 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------cccccccCCCC---CCCCccccccc
Confidence 566999999999999999999999999999864211 01223332211 1122 27889
Q ss_pred ChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC-
Q 039265 177 HGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP- 255 (708)
Q Consensus 177 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~- 255 (708)
|||||||||+|..... . ...||||+|+|+.+|++... .....+..++.++.+ .++|||||||.....
T Consensus 86 HGT~vAgiiag~~~~~-------~-~~~GvAp~a~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~ 153 (297)
T cd04059 86 HGTRCAGEIAAVGNNG-------I-CGVGVAPGAKLGGIRMLDGD---VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGK 153 (297)
T ss_pred cCcceeeEEEeecCCC-------c-ccccccccceEeEEEecCCc---cccHHHHHHHhcccC-CceEEECCCCCCCCCC
Confidence 9999999999885221 1 23799999999999998754 333445566665544 469999999975422
Q ss_pred ---CCCCHHHHHHHHHHh-----cCceEEEecCCCCCCCCc----ccCCCCceEEEcccccCcceEEEEEcCCCceeeee
Q 039265 256 ---FFNDSIAVGSFAAIQ-----KGIFVSCAAGNSGPFNST----ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGE 323 (708)
Q Consensus 256 ---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 323 (708)
.....+..++.++.. +|++||+||||+|..... .....+++|+|||.+.
T Consensus 154 ~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------------------- 214 (297)
T cd04059 154 TVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------------------- 214 (297)
T ss_pred ccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-------------------
Confidence 122334444555543 699999999999974322 2245688999988521
Q ss_pred eccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc
Q 039265 324 SVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS 403 (708)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~ 403 (708)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCc----
Q 039265 404 VIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLS---- 479 (708)
Q Consensus 404 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~---- 479 (708)
.+.++.||++|+.. +++|||..
T Consensus 215 ----------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~ 240 (297)
T cd04059 215 ----------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNP 240 (297)
T ss_pred ----------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCC
Confidence 12567899999987 89999987
Q ss_pred ---EEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 480 ---ILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 480 ---I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 241 ~~~i~~~~~~~------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 241 EASIVTTDLGG------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCceEeCCCCC------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 76665431 0156788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=331.05 Aligned_cols=244 Identities=29% Similarity=0.395 Sum_probs=186.0
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhc
Q 039265 108 FGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAG 187 (708)
Q Consensus 108 ~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag 187 (708)
+|+||+|+|||+||+.+||+|.+..... ..+....+. ......|..+|||||||||+|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------~~~~~~~~~-~~~~~~~~~~HGT~vagiiag 58 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------SYYVAVNDA-GYASNGDGDSHGTHVAGVIAA 58 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------ccccccccc-cCCCCCCCCChHHHHHHHHhc
Confidence 6999999999999999999998652221 000000000 023456789999999999998
Q ss_pred CcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC------------
Q 039265 188 AFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP------------ 255 (708)
Q Consensus 188 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~------------ 255 (708)
+..+ ..+.|+||+|+|+.+|+++..........+.++++++++.+++|||||||.....
T Consensus 59 ~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~ 129 (267)
T cd04848 59 ARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAA 129 (267)
T ss_pred CcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhcc
Confidence 8532 2348999999999999998751115567788999999999999999999986422
Q ss_pred CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc---------cCCCCceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 256 FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI---------SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 256 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
.....+...+..+.++|+++|+||||++...... ++..+++|+||+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-------------------- 189 (267)
T cd04848 130 TQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-------------------- 189 (267)
T ss_pred ccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--------------------
Confidence 1455666777788899999999999998654332 23457888888853211
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCcccc--ccCCCCCCCCCCCcCCceeeCCCcEEeee
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVS--FSSRGPNLASPGILKPDIIGPGLSILAAW 484 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~g~~KPDI~APG~~I~sa~ 484 (708)
.... ||++|+.. ..++++|||.+|+++.
T Consensus 190 ---------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~ 219 (267)
T cd04848 190 ---------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTD 219 (267)
T ss_pred ---------------------------------------------Ccccccccccchhh-----hhheeecCcCceeecc
Confidence 2223 47887654 2347999999999988
Q ss_pred cCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 485 FEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 485 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+.. ...|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 220 ~~~-------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 220 PDG-------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred cCC-------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 631 168899999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=320.16 Aligned_cols=355 Identities=26% Similarity=0.385 Sum_probs=257.6
Q ss_pred ceEEEEeCCCCCCCcccchhHHHHHHHhcccc-ccC--CCCCCccEEEecceeEEEEEEcCH-----HHHHHHhcCCCeE
Q 039265 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYS-LES--SDVQQRPFYSYKNVISGFAAKLTE-----EEVQDMKKKNGFV 75 (708)
Q Consensus 4 ~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~~~~v~~~y~~~~~g~sv~~~~-----~~i~~L~~~~~V~ 75 (708)
..|||+|+.-.... .++..+++.|... ... --.....-..|-.-|.-+-++-.. -+|+.|..+|.|+
T Consensus 50 ~EyIv~F~~y~~Ak-----~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 50 SEYIVRFKQYKPAK-----DRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ceeEEEecccccch-----HHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 57999999876432 2334444444421 000 001122223454455555554432 2489999999999
Q ss_pred EEEeceeeccccc------------------------------CCCcccccc------------cCCcccccCCCCCccE
Q 039265 76 SARPERKVRLQTT------------------------------HSPSFLGLH------------QGMGVWKESNFGKGVI 113 (708)
Q Consensus 76 ~V~~~~~~~~~~~------------------------------~s~~~~g~~------------~~~~~~~~g~~G~Gv~ 113 (708)
.|.|.+.+.+... ..+.-|+-. .+.-+|+.|+||++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 9998766543100 000011100 1345999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCC
Q 039265 114 IGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNA 193 (708)
Q Consensus 114 VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 193 (708)
|||.|||+..+||.|+. +....++.+ ...-.|.-||||.|||+|||..
T Consensus 205 vAiFDTGl~~~HPHFrn----------------------vKERTNWTN------E~tLdD~lgHGTFVAGvia~~~---- 252 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRN----------------------VKERTNWTN------EDTLDDNLGHGTFVAGVIAGRN---- 252 (1033)
T ss_pred EEEeecccccCCccccc----------------------hhhhcCCcC------ccccccCcccceeEeeeeccch----
Confidence 99999999999999973 111223332 2455678999999999999874
Q ss_pred cccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcC
Q 039265 194 ESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKG 272 (708)
Q Consensus 194 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 272 (708)
...|.||+++|+++|||.+. . .+.+..++|+.||+....||+|+|+|++. +.+.++-.-+.+....+
T Consensus 253 --------ec~gfa~d~e~~~frvft~~--qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwEltAnN 320 (1033)
T KOG4266|consen 253 --------ECLGFASDTEIYAFRVFTDA--QVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELTANN 320 (1033)
T ss_pred --------hhcccCCccceeEEEeeccc--eeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhccCc
Confidence 13799999999999999876 4 77889999999999999999999999974 45556666666777899
Q ss_pred ceEEEecCCCCCCCCcccCCC--CceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCC
Q 039265 273 IFVSCAAGNSGPFNSTISNEA--PWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESA 350 (708)
Q Consensus 273 v~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (708)
+++|.|+||+|+-..+..+++ ..||.||.-
T Consensus 321 vIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------------------------------------ 352 (1033)
T KOG4266|consen 321 VIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------------------------------------ 352 (1033)
T ss_pred EEEEEecCCCCcceeecCCcccccceeeeccc------------------------------------------------
Confidence 999999999999877665433 344444431
Q ss_pred ccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhc
Q 039265 351 FCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINS 430 (708)
Q Consensus 351 ~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 430 (708)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEecceEeCCcCCCccccccCCCCCC-C---CCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhh
Q 039265 431 TATPMATIIFKGTVIGNSLAPTVVSFSSRGPNL-A---SPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSM 506 (708)
Q Consensus 431 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~-~---~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 506 (708)
.-.+.++.|||||-+. . ..||+||||++-|.+|....-. .+...+||||.
T Consensus 353 -----------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTSV 406 (1033)
T KOG4266|consen 353 -----------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTSV 406 (1033)
T ss_pred -----------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCcc
Confidence 1234899999999654 2 2489999999999999876554 77889999999
Q ss_pred hHHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 507 ACPHLSGIAALLKS----SHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 507 AaP~VAG~aALl~q----~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-++||+|++|+.++.+
T Consensus 407 aSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 407 ASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred cchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHH
Confidence 99999999999965 334568999999999999998653 33799999999988876
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=292.42 Aligned_cols=195 Identities=21% Similarity=0.170 Sum_probs=143.2
Q ss_pred CCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHH--HHCCCcEEEE
Q 039265 170 PPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAA--IEDGVDVLSI 247 (708)
Q Consensus 170 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a--~~~g~dVIn~ 247 (708)
...|.++|||||||||||. .|++|+|+|+..++.. .....+..+++|+ .+.+++||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-----~~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-----KSNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-----CCCCccHHHHHHHHHhcCCceEEEe
Confidence 3457899999999999987 4677999998765522 1223466777787 5679999999
Q ss_pred ccCCCCCCC------CCCHHHHHHHHHHhc-CceEEEecCCCCCCC-----CcccCCCCceEEEcccccCcceEEEEEcC
Q 039265 248 SIGGGSVPF------FNDSIAVGSFAAIQK-GIFVSCAAGNSGPFN-----STISNEAPWILTVGASTLDRSIVATAKLG 315 (708)
Q Consensus 248 S~G~~~~~~------~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~ 315 (708)
|||...... ..+.+..++.++.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 999864321 223566666676665 999999999999853 234567789999998632110
Q ss_pred CCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEe
Q 039265 316 NREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILM 395 (708)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~ 395 (708)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceee
Q 039265 396 NDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIG 475 (708)
Q Consensus 396 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~A 475 (708)
.-..+.||++|-....++..||||+|
T Consensus 164 ------------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~A 189 (247)
T cd07488 164 ------------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVA 189 (247)
T ss_pred ------------------------------------------------------cceecccccccCCCCCCCCceeEEEE
Confidence 00234556554322235789999999
Q ss_pred CCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCH------HHHHHHHHcc
Q 039265 476 PGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSP------AAIKSALMTT 537 (708)
Q Consensus 476 PG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~------~~vk~~L~~T 537 (708)
||++|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 190 PG~~i~s--~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 190 PGSNYNL--PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeeeEEC--CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9999998 33 67899999999999999999999999887764 3567777665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=309.55 Aligned_cols=357 Identities=25% Similarity=0.302 Sum_probs=232.5
Q ss_pred CCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCC
Q 039265 175 DGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGS 253 (708)
Q Consensus 175 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 253 (708)
..|||||||||+|+..+... ..|+||+|+|+.+++.+...+. -+...+.+|+..++++++||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999755433 3799999999999998765322 45667899999999999999999999764
Q ss_pred -CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccC---CCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 254 -VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISN---EAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 254 -~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
.+.....+...-+...++|+++|+||||+||...+.++ ....+|.|||.-......+. |
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~--------------y--- 444 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE--------------Y--- 444 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh--------------h---
Confidence 34445555555445558999999999999999877753 44578888884211100000 0
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
T Consensus 445 -------------------------------------------------------------------------------- 444 (1304)
T KOG1114|consen 445 -------------------------------------------------------------------------------- 444 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~ 489 (708)
... .+-......+|||||+. ||-+-..|+|||+.|-+- |..
T Consensus 445 ----------------~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~-- 485 (1304)
T KOG1114|consen 445 ----------------SVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY-- 485 (1304)
T ss_pred ----------------hhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chh--
Confidence 000 01122577899999999 789999999999999763 211
Q ss_pred CCCCCCcceeeccchhhhHHHHHHHHHHHH----hcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCC
Q 039265 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLK----SSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565 (708)
Q Consensus 490 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~ 565 (708)
....-..|.|||||+|+++|.+|||+ |.+-.|||..||.+|++||+++++. .++.||.|+
T Consensus 486 ----tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~Gm 549 (1304)
T KOG1114|consen 486 ----TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGM 549 (1304)
T ss_pred ----hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCcce
Confidence 11456789999999999999999985 4577899999999999999998653 458999999
Q ss_pred CCcCCCCCCcccccCCCCCccccc-ccCCCC-cceeEEEecCCccccccCcccccCCCceEEEEEEE----ecC---CCc
Q 039265 566 VNPSRANDPGLVYDIQPDDYIPYL-CGLGYS-DKEVGILVHRPVAQLNYPSFSVTLGPAQTFTRTVT----NVG---QVY 636 (708)
Q Consensus 566 vn~~~Al~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~n~ps~~~~~~~~~~~~~tv~----n~g---~~~ 636 (708)
|++++|.+--.-.+.....-+.|+ ...+-+ +.-+.. +++ ...+- +..+++-|. |-- ...
T Consensus 550 lqVdkAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyL--Rep-~~~~~---------p~e~~i~VePiF~~~~e~~kek 617 (1304)
T KOG1114|consen 550 LQVDKAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYL--REP-TQVCS---------PSEHTIGVEPIFENGEENEKEK 617 (1304)
T ss_pred eehhHHHHHHHHhhhcCCccceeEEEeeccccccceEe--cCC-cccCC---------ccccceeccccccCcccccccc
Confidence 999999862111111111122220 000000 000100 000 00011 122222221 100 111
Q ss_pred eeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc-----CceEEEEeEEEEeC
Q 039265 637 SSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS-----AKYSVRSPISVRLQ 708 (708)
Q Consensus 637 ~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~-----~~~~~~~P~~~~~~ 708 (708)
..|.+.+.-.....+---|+.+-+. ++.+.+.|+++++.... +.+++.|.--| .+.-+|+||.|..+
T Consensus 618 i~Fe~~L~L~st~pwVq~p~~l~l~--~~~R~i~VrVDpt~l~~---G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 618 ISFEVQLSLASTQPWVQCPEYLMLA--NQGRGINVRVDPTGLAP---GVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred ccceeeEeeecCCcceeCchhheec--cCCceeEEEECCcCCCC---CcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 2222222211111111137777775 58889999999988876 78888888543 57999999998753
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=270.17 Aligned_cols=234 Identities=36% Similarity=0.506 Sum_probs=176.5
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
|+|+|||+|++.+||+|...... .....++...... .....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGG------------------GDGGNDDDDNENG--PTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccC------------------cccccccccCcCC--CCCCCCCCCcHHHHHHHHhcCCCC
Confidence 68999999999999987211000 0001111110000 124567889999999999988532
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHH-HCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAI-EDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
.. ..|+||+++|+.+|+.... + .....+++++++++ +.+++|||||||..... ....+...+.++.
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~~~--~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~ 128 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLDGD--GSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYAL 128 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEecCC--CCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHH
Confidence 11 1799999999999998776 4 67788999999999 89999999999987433 3456666777777
Q ss_pred hc-CceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCC
Q 039265 270 QK-GIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNG 345 (708)
Q Consensus 270 ~~-Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (708)
++ |+++|+||||.+.... ..++..+++|+||+.+...
T Consensus 129 ~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~--------------------------------------- 169 (241)
T cd00306 129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG--------------------------------------- 169 (241)
T ss_pred HhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC---------------------------------------
Confidence 77 9999999999998876 4778899999999963211
Q ss_pred CCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHH
Q 039265 346 KPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 346 ~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 425 (708)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCceEEEEecceEeCCcCCCccc-cccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccch
Q 039265 426 SYINSTATPMATIIFKGTVIGNSLAPTVV-SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGT 504 (708)
Q Consensus 426 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 504 (708)
... .++++| .|||+.|||.++.+.... ....+..++||
T Consensus 170 --------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-------~~~~~~~~~GT 208 (241)
T cd00306 170 --------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-------GGGGYATLSGT 208 (241)
T ss_pred --------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-------CCCCeEeeccH
Confidence 111 334444 466999999999874211 12789999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 505 SMACPHLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 505 SmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
|||||+|||++|||+|++|++++.++|++|+.|
T Consensus 209 S~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 209 SMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=240.56 Aligned_cols=274 Identities=34% Similarity=0.479 Sum_probs=199.6
Q ss_pred CCccccc--CCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCC-CCCCCC
Q 039265 99 GMGVWKE--SNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTE-PPIDVD 175 (708)
Q Consensus 99 ~~~~~~~--g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~-~~~d~~ 175 (708)
....|.. +++|+|++|+|||+||+..||+|.+.... .++|.... .. ...|..
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------~~~~~~~~----~~~~~~d~~ 183 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------GGDFVDGD----PEPPFLDDN 183 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------ccccccCC----CCCCCCCCC
Confidence 4457887 99999999999999999999999865211 13344321 11 246899
Q ss_pred CChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC--CcEEEEccCCCC
Q 039265 176 GHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG--VDVLSISIGGGS 253 (708)
Q Consensus 176 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g--~dVIn~S~G~~~ 253 (708)
+|||||+|++++.... +.....|+||+++++.+|++..........+++++++++++.+ +++||||+|...
T Consensus 184 ~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~ 256 (508)
T COG1404 184 GHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSL 256 (508)
T ss_pred CCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCc
Confidence 9999999999984211 1112479999999999999986521367777899999999999 999999999862
Q ss_pred CCCCCCHHHHHHHHHHhcC-ceEEEecCCCCCCCC----cccCCC--CceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 254 VPFFNDSIAVGSFAAIQKG-IFVSCAAGNSGPFNS----TISNEA--PWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 254 ~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
.......+..++..+...| +++|+++||.+.... .++... +.+++||+...
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------------- 314 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------------- 314 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------------------
Confidence 2233455666666777777 999999999987752 222222 25566665310
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEe----
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILA---- 482 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~s---- 482 (708)
.+.++.||++|+.. ..+++|||.+|.+
T Consensus 315 -------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~ 345 (508)
T COG1404 315 -------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAV 345 (508)
T ss_pred -------------------------------------------CCccccccccCCCC------CcceeCCCccccccccc
Confidence 12677899999752 2299999999988
Q ss_pred -eecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCC-CCCHHHHHHHHHccccccccCCccccccCCCCCCCCc
Q 039265 483 -AWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHP-YWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFA 560 (708)
Q Consensus 483 -a~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 560 (708)
+++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.... .......
T Consensus 346 ~~~~~~~-------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 407 (508)
T COG1404 346 NTLPGDG-------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTP-----------LSGVDNL 407 (508)
T ss_pred eeeeCCc-------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccccc-----------CCccccc
Confidence 555410 2499999999999999999999999999 8999999999888887300 1123356
Q ss_pred cCCCCCCcCCCCC
Q 039265 561 IGAGHVNPSRAND 573 (708)
Q Consensus 561 ~G~G~vn~~~Al~ 573 (708)
++.|..+...+..
T Consensus 408 ~~~~~~~~~~~~~ 420 (508)
T COG1404 408 VGGGLANLDAAAT 420 (508)
T ss_pred cccCccccccccc
Confidence 6777666655544
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-22 Score=199.36 Aligned_cols=307 Identities=19% Similarity=0.237 Sum_probs=187.6
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCC--CCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPID--VDG 176 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d--~~g 176 (708)
+..+|.+|++||+|+++|+|.||||-||+|+.+ ..--..++|...+..+ ..-..| .+.
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n-------------------ynaeasydfssndpfp-yprytddwfns 209 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-------------------YNAEASYDFSSNDPFP-YPRYTDDWFNS 209 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc-------------------cCceeecccccCCCCC-CCcccchhhhc
Confidence 456999999999999999999999999999742 1122345565432111 111122 478
Q ss_pred ChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEEccCCCCCC
Q 039265 177 HGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-DGVDVLSISIGGGSVP 255 (708)
Q Consensus 177 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~ 255 (708)
|||.|||-+++...++.- -.|||.+.++..+|+++.. +..|+++|-..-.+ ...+|-+-|||.....
T Consensus 210 hgtrcagev~aardngic--------gvgvaydskvagirmldqp----ymtdlieansmghep~kihiysaswgptddg 277 (629)
T KOG3526|consen 210 HGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQP----YMTDLIEANSMGHEPSKIHIYSASWGPTDDG 277 (629)
T ss_pred cCccccceeeeeccCCce--------eeeeeeccccceeeecCCc----hhhhhhhhcccCCCCceEEEEecccCcCCCC
Confidence 999999988877543221 1699999999999998754 55566554322222 2478999999975422
Q ss_pred -CCC---CHHHHHHHHHH-----hcCceEEEecCCCCCCC-Cccc--CCCCceEEEcccccCcceEEEEEcCCCceeeee
Q 039265 256 -FFN---DSIAVGSFAAI-----QKGIFVSCAAGNSGPFN-STIS--NEAPWILTVGASTLDRSIVATAKLGNREEFDGE 323 (708)
Q Consensus 256 -~~~---~~~~~a~~~a~-----~~Gv~vV~AAGN~g~~~-~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 323 (708)
..+ ++..+|+-+-+ ..|-++|.|.|..|.+. +... +.+-|.|++-+.-.+ |+..
T Consensus 278 ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaind-----------g~na--- 343 (629)
T KOG3526|consen 278 KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIND-----------GENA--- 343 (629)
T ss_pred cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcC-----------Cccc---
Confidence 111 22222222323 25668999999988543 2222 344466665442111 1000
Q ss_pred eccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc
Q 039265 324 SVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS 403 (708)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~ 403 (708)
...+.|.+
T Consensus 344 -----------------------hydescss------------------------------------------------- 351 (629)
T KOG3526|consen 344 -----------------------HYDESCSS------------------------------------------------- 351 (629)
T ss_pred -----------------------cccchhhH-------------------------------------------------
Confidence 00111211
Q ss_pred cccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEee
Q 039265 404 VIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAA 483 (708)
Q Consensus 404 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa 483 (708)
-.-+.||+-|-.+.. |.-.-|
T Consensus 352 -----------------------------------------------tlastfsng~rnpet-gvattd----------- 372 (629)
T KOG3526|consen 352 -----------------------------------------------TLASTFSNGGRNPET-GVATTD----------- 372 (629)
T ss_pred -----------------------------------------------HHHHHhhcCCcCCCc-ceeeec-----------
Confidence 134567776654431 111111
Q ss_pred ecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCcc----ccccCCCCCCCC
Q 039265 484 WFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGER----IVDETLRPADIF 559 (708)
Q Consensus 484 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~----~~~~~~~~~~~~ 559 (708)
-++.....-||||.|||-.||+.||.++++|.|+..+++.+-.-|.++..-.+.. +.-++-....+.
T Consensus 373 ---------lyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnh 443 (629)
T KOG3526|consen 373 ---------LYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNH 443 (629)
T ss_pred ---------cccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeec
Confidence 1125566789999999999999999999999999999999877777654321111 111222334567
Q ss_pred ccCCCCCCcCCCCCCcccccCCCCCcccccccCCC
Q 039265 560 AIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGY 594 (708)
Q Consensus 560 ~~G~G~vn~~~Al~~~l~~~~~~~~~~~~~~~~~~ 594 (708)
.||+|.+|+.+.+.....+...+.- |-|..|.
T Consensus 444 lfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 444 LFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred ccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 8999999998877655555544443 4576654
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=177.26 Aligned_cols=99 Identities=27% Similarity=0.315 Sum_probs=80.0
Q ss_pred eEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHC---CCcEEEEccCCCCCC---CCCCHHHHHHHHHHhcCceEE
Q 039265 203 AAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIED---GVDVLSISIGGGSVP---FFNDSIAVGSFAAIQKGIFVS 276 (708)
Q Consensus 203 ~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~---g~dVIn~S~G~~~~~---~~~~~~~~a~~~a~~~Gv~vV 276 (708)
+.||||+|+|+.|++.+.. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||.||
T Consensus 83 ~~gvAP~a~i~~~~~~~~~-----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV-----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHhccCCCeEEEEEECCcC-----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 4799999999999997542 34677888888887 999999999986432 233567778888999999999
Q ss_pred EecCCCCCCCC-----------cccCCCCceEEEcccccCc
Q 039265 277 CAAGNSGPFNS-----------TISNEAPWILTVGASTLDR 306 (708)
Q Consensus 277 ~AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 306 (708)
+|+||+|.... .+++.+|++++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997653 3578999999999986544
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=112.66 Aligned_cols=118 Identities=28% Similarity=0.402 Sum_probs=93.0
Q ss_pred CCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccC-Ccc
Q 039265 332 PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIAD-PHV 410 (708)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~-~~~ 410 (708)
.....+++|.+. |....+...+++|||+||.|+ .|.+.+|..+++.+||.++|++++.......... ...
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg-~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~ 94 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRG-EITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF 94 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECC-CCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCe
Confidence 356788888653 333445566899999999999 8999999999999999999999887543221111 346
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCC
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNL 463 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 463 (708)
+|.+.|+..+|+.|++++++ .++|.|..+.. ..+++.++.||||||+.
T Consensus 95 iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 95 IPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred EeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 89999999999999999987 66777777655 46778899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=105.32 Aligned_cols=122 Identities=49% Similarity=0.808 Sum_probs=96.9
Q ss_pred EEcCCCceeeeeeccCCCCCCCCceeEEEecCC-CCCCCCccCCCCCCCCcccCcEEEeecCCCc-chhhHHHHHHHcCC
Q 039265 312 AKLGNREEFDGESVFQPKDFPQTPLPLVYAGMN-GKPESAFCGNGSLSGIDVKGKVVLCERGGGI-ARIFKGEQVKNAGG 389 (708)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~-~~~~k~~~~~~~ga 389 (708)
++++|+..+.|++++.... ..+++++.... .......|.+......+++|||+||.++ .| .+.+|..+++++||
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~-~~~~~~~k~~~~~~~GA 77 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRG-GNTSRVAKGDAVKAAGG 77 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCC-CCccHHHHHHHHHHcCC
Confidence 6789999999999996543 45677663332 2334578988888888999999999999 78 89999999999999
Q ss_pred cEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEE
Q 039265 390 AAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMAT 437 (708)
Q Consensus 390 ~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 437 (708)
.|+|++++.............+|.+.|..++|+.|++|+++..+++++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999876543333333467999999999999999999987766544
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-10 Score=94.76 Aligned_cols=80 Identities=34% Similarity=0.620 Sum_probs=60.6
Q ss_pred eEEEEeCCCCCCCc-ccchhHHHHHHHhccccccC-CCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEecee
Q 039265 5 TYIVSVQQPEGSDL-AESEYVENWHRSFLPYSLES-SDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERK 82 (708)
Q Consensus 5 ~YIV~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~ 82 (708)
+|||+||+...... . +.+.+|+.+++.+...+ ...+.++.+.|+..||||++++++++++.|+++|+|++|+||+.
T Consensus 1 ~YIV~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDASAASSF--SSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTSTHHCHH--HHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCCcchhH--HHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999999976555 4 77888888766642111 14688999999999999999999999999999999999999998
Q ss_pred eccc
Q 039265 83 VRLQ 86 (708)
Q Consensus 83 ~~~~ 86 (708)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8763
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.2e-08 Score=86.61 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=71.9
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCC-cccc---c----CCcccceEEEcHHH
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA-FSVI---A----DPHVLPATHVSNDA 420 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~-~~~~---~----~~~~~p~~~i~~~~ 420 (708)
.+.|.+.. ...+++|+|+|++|| .|.|.+|..+++++||.++|+||+.... .... . ....||+++|+..+
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG-~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERG-GCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 46698644 356799999999999 9999999999999999999999876542 1111 1 23479999999999
Q ss_pred HHHHHHHHhcCCCceEEEE
Q 039265 421 GLKIKSYINSTATPMATII 439 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~ 439 (708)
|+.|++.+..+..+++.+.
T Consensus 99 G~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 99 GYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHHcCCceEEeee
Confidence 9999999999888776653
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.7e-08 Score=87.96 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=75.6
Q ss_pred ceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc---c--cCCc
Q 039265 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV---I--ADPH 409 (708)
Q Consensus 335 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~---~--~~~~ 409 (708)
.-++++... ...+.|.+..+...+++|||+|+.|+ .|.+.+|..+++++||.++|++|+....... . ....
T Consensus 18 ~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg-~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRG-GCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 345555432 12467988888878999999999999 9999999999999999999999876532111 1 1345
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCce
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPM 435 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~ 435 (708)
.+|.++|+..+|+.|++++.++.+.+
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 69999999999999999998776543
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.3e-08 Score=84.94 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=72.8
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc--cc--cCCc
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS--VI--ADPH 409 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~--~~--~~~~ 409 (708)
..+|++.... ...|.+..+.+.+++|+|+|++|| .|+|.+|..+++++||.++|++|+...... .. ....
T Consensus 20 ~~~~~~~~~~-----~~gC~~~~~~~~~l~gkIaLV~RG-~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLTS-----SVLCSASDVPPGGLKGKAVVVMRG-NCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCCC-----cCCCCccccCccccCCeEEEEECC-CcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 3466665543 356998888888899999999999 999999999999999999999998753111 11 1345
Q ss_pred ccceEEEcHHHHHHHHHHHhc
Q 039265 410 VLPATHVSNDAGLKIKSYINS 430 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~ 430 (708)
.||+++|+..+|+.|++.+..
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999988864
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.4e-08 Score=88.57 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred CCccCCCCC--CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc-cc-cc--CCcccceEEEcHHHHH
Q 039265 349 SAFCGNGSL--SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF-SV-IA--DPHVLPATHVSNDAGL 422 (708)
Q Consensus 349 ~~~c~~~~~--~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~-~~-~~--~~~~~p~~~i~~~~g~ 422 (708)
.+.|.+... .+.++.|+|+|++|| .|.|.+|..+++++||.++|+||+...+. .. +. ....+|.++|+..+|+
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG-~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRG-NCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 467988776 567899999999999 99999999999999999999999876221 11 11 2347899999999999
Q ss_pred HHHHHHhcCCCceEE
Q 039265 423 KIKSYINSTATPMAT 437 (708)
Q Consensus 423 ~l~~~~~~~~~~~~~ 437 (708)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999888766554
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=83.77 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=74.3
Q ss_pred eeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc-cCCcccceE
Q 039265 336 LPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI-ADPHVLPAT 414 (708)
Q Consensus 336 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~-~~~~~~p~~ 414 (708)
+|++..........+.|.+...+..+++|+|+|++|| .|.|.+|..+++++||.++|+||+........ .+...+|.+
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg-~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRG-TCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECC-CCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 7776665554556678987766656899999999999 89999999999999999999998865432211 222345555
Q ss_pred EEcHHHHHHHHHHHhcCCCce
Q 039265 415 HVSNDAGLKIKSYINSTATPM 435 (708)
Q Consensus 415 ~i~~~~g~~l~~~~~~~~~~~ 435 (708)
.+ ..+|++|++.++.+...+
T Consensus 107 ~~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCeEE
Confidence 55 999999999998765443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-08 Score=105.45 Aligned_cols=291 Identities=20% Similarity=0.186 Sum_probs=173.8
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC-CCCCCCCCCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG-TEPPIDVDGH 177 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~-~~~~~d~~gH 177 (708)
+...|..+++|+++.|+|.|.|++..||++... ....+.+++....+... -.+......|
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------~~~~~s~d~~~~~~~p~~~~~~~~~~~~ 82 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------YDPLGSYDVNRHDNDPEPRCDGTNENKH 82 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------cCcceeEeeecCCCCcccccCCCCcccc
Confidence 456999999999999999999999999999742 22333444443322221 1222245889
Q ss_pred hHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEEccCCCCCC-
Q 039265 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-DGVDVLSISIGGGSVP- 255 (708)
Q Consensus 178 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~- 255 (708)
||-||+-.+..... .--..|+++++++..++++... ..+...+...... .-+++-+.|||.....
T Consensus 83 g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~-----v~~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 83 GTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC-----VSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred CCCCCcccccccCC--------CcCCCCcccCccccceeeeeee-----cccceecccccCCCCCceeecCcCCcccCCC
Confidence 99999999987411 1123799999999999998643 1122222222222 2478999999964311
Q ss_pred ---CCCCHHHHHHHH-----HHhcCceEEEecCCCCCCCCccc--CCCCceEEEcccccCcceEEEEEcCCCceeeeeec
Q 039265 256 ---FFNDSIAVGSFA-----AIQKGIFVSCAAGNSGPFNSTIS--NEAPWILTVGASTLDRSIVATAKLGNREEFDGESV 325 (708)
Q Consensus 256 ---~~~~~~~~a~~~-----a~~~Gv~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 325 (708)
........+... ...+|-+.|+|.||.|....... ...+.+.++.-...
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~--------------------- 208 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCA--------------------- 208 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccc---------------------
Confidence 111112222222 23578899999999886543322 11111111111000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc
Q 039265 326 FQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI 405 (708)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~ 405 (708)
..|...+. ..+ .
T Consensus 209 ------------------------~~~~~~p~----y~~---------~------------------------------- 220 (431)
T KOG3525|consen 209 ------------------------TQCGKKPQ----YRE---------R------------------------------- 220 (431)
T ss_pred ------------------------cccCCCcc----ccc---------c-------------------------------
Confidence 00000000 000 0
Q ss_pred cCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeec
Q 039265 406 ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWF 485 (708)
Q Consensus 406 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~ 485 (708)
-.....+.+|+.+| .. . -|..+.+
T Consensus 221 ------------------------------------------C~~~~~s~~s~~~~-~~--------~-----~~~~~~~ 244 (431)
T KOG3525|consen 221 ------------------------------------------CASCLASTYSSGGP-TE--------E-----CIVCTDP 244 (431)
T ss_pred ------------------------------------------ccccccccccCCCC-cc--------e-----eeeecCC
Confidence 00114456788888 31 1 1111111
Q ss_pred CCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCC
Q 039265 486 EPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565 (708)
Q Consensus 486 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~ 565 (708)
. ...-.--.|||.++|+.||+.+|.++++|.++..++..++..++.........+..+.........+|+|+
T Consensus 245 ~--------~~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~ 316 (431)
T KOG3525|consen 245 R--------HSCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGL 316 (431)
T ss_pred C--------ccccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccc
Confidence 1 13334457999999999999999999999999999999999998876544444444443344557899999
Q ss_pred CCcCCCCCC
Q 039265 566 VNPSRANDP 574 (708)
Q Consensus 566 vn~~~Al~~ 574 (708)
+|+..-+..
T Consensus 317 ~~~~~~~~~ 325 (431)
T KOG3525|consen 317 LDAKALVSC 325 (431)
T ss_pred cCcchhhhh
Confidence 999876653
|
|
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.3e-07 Score=82.54 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc-cccc---CCcccceEEEcHHHHHH
Q 039265 348 ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF-SVIA---DPHVLPATHVSNDAGLK 423 (708)
Q Consensus 348 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~-~~~~---~~~~~p~~~i~~~~g~~ 423 (708)
....|.+... ..+++|||+||.|+ .|.+.+|..+++++||.++|++++..... .... ....+|++.|+.++|+.
T Consensus 26 ~~~~C~~~~~-~~~v~GkIvL~~rg-~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 26 NTDGCTAFTN-AAAFAGKIALIDRG-TCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred cccccCCCCc-CCCCCCEEEEEECC-CCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 4567988776 34699999999999 89999999999999999999998866421 1111 23479999999999999
Q ss_pred HHHHHhcCCCceE
Q 039265 424 IKSYINSTATPMA 436 (708)
Q Consensus 424 l~~~~~~~~~~~~ 436 (708)
|++|++.+...++
T Consensus 104 l~~~l~~g~~v~v 116 (118)
T cd04818 104 LKAALAAGGTVTV 116 (118)
T ss_pred HHHHHhcCCcEEE
Confidence 9999987765443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-07 Score=82.49 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=67.9
Q ss_pred CCccCCCCCC--CC----cccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc-----------cCCccc
Q 039265 349 SAFCGNGSLS--GI----DVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI-----------ADPHVL 411 (708)
Q Consensus 349 ~~~c~~~~~~--~~----~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~-----------~~~~~~ 411 (708)
.+.|.+.... +. ...++|+|++|| .|.|.+|..+++++||.++|++|+........ .+...+
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG-~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRG-GCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECC-CcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 4568766542 22 378899999999 99999999999999999999999865321111 123369
Q ss_pred ceEEEcHHHHHHHHHHHhcCCCceEE
Q 039265 412 PATHVSNDAGLKIKSYINSTATPMAT 437 (708)
Q Consensus 412 p~~~i~~~~g~~l~~~~~~~~~~~~~ 437 (708)
|+++|+..+|+.|++.+..+...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999887765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-07 Score=83.90 Aligned_cols=86 Identities=21% Similarity=0.343 Sum_probs=68.2
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCC------cccc------cCCcccceEEE
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA------FSVI------ADPHVLPATHV 416 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~------~~~~------~~~~~~p~~~i 416 (708)
.+.|.+... +.+++|||+|++|| .|.|.+|..+++++||.++|++|+.... .... .+...||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG-~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERG-DCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECC-CCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 467976544 55789999999999 9999999999999999999999865432 1111 12357999999
Q ss_pred cHHHHHHHHHHHhcCCCceE
Q 039265 417 SNDAGLKIKSYINSTATPMA 436 (708)
Q Consensus 417 ~~~~g~~l~~~~~~~~~~~~ 436 (708)
+..+|+.|+++++.+...++
T Consensus 105 ~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EHHHHHHHHHHHHhCCceEE
Confidence 99999999999987765443
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=83.05 Aligned_cols=78 Identities=33% Similarity=0.463 Sum_probs=62.5
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCC----CCcccccCCcccceEEEcHHHHHHHH
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEP----NAFSVIADPHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 425 (708)
..|.+......+++|||+||.|+ .|.+.+|..+++++||.++|+++... ...........+|+++|+.++|+.|+
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg-~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERG-SCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEEST-SSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred ccccccccCCccccceEEEEecC-CCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 44666678888999999999999 99999999999999999999999211 11222334678999999999999999
Q ss_pred HHH
Q 039265 426 SYI 428 (708)
Q Consensus 426 ~~~ 428 (708)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-07 Score=82.26 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=68.7
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc----ccCCcccceEEEcHHHHHHHH
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV----IADPHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~----~~~~~~~p~~~i~~~~g~~l~ 425 (708)
..|.+..+ +.+++|||+|++|+ .|.+.+|..+++++||.++|+||+...+... ..+...+|++.|+..+|+.|+
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg-~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERG-ECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 35876554 35799999999999 9999999999999999999999887432211 112457999999999999999
Q ss_pred HHHhcCCCceEE
Q 039265 426 SYINSTATPMAT 437 (708)
Q Consensus 426 ~~~~~~~~~~~~ 437 (708)
+.++++.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999888765543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=83.48 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=67.5
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc------cCCcccceEEEcHHHHH
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI------ADPHVLPATHVSNDAGL 422 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~ 422 (708)
.+.|.+.. .+++|+|+|++|| .|.|.+|..+++++||.++|+||+........ .....||+++|+..+|+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG-~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERG-ECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred ccccCCCC---cccCCeEEEEECC-CCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 46698654 3789999999999 99999999999999999999998764321111 11357999999999999
Q ss_pred HHHHHHhcCCCceE
Q 039265 423 KIKSYINSTATPMA 436 (708)
Q Consensus 423 ~l~~~~~~~~~~~~ 436 (708)
.|++.+..+...++
T Consensus 124 ~L~~~l~~g~~Vtv 137 (139)
T cd02132 124 ALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999988765543
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=77.81 Aligned_cols=82 Identities=28% Similarity=0.424 Sum_probs=57.9
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCC--------CC----------e-EEEeecCeEEEccCCcEEEEEEEEEecCC-CCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAP--------QG----------V-VVSVKPSKLYFSKVNQKATYSVTFTRSGS-GYT 681 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~--------~~----------~-~v~v~p~~~~~~~~~~~~~~~v~~~~~~~-~~~ 681 (708)
..+++++|+|.|+...+|++++... .+ . .++..|.+|++++ |++++++|+|+++.. ...
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCCcc
Confidence 5788999999999999999998721 11 1 6778899999998 999999999999663 111
Q ss_pred CCceEEEEEEEEc-Cc-eEEEEeEE
Q 039265 682 SGQFAQGYITWVS-AK-YSVRSPIS 704 (708)
Q Consensus 682 ~~~~~~G~i~~~~-~~-~~~~~P~~ 704 (708)
...+++|||.+++ .. ..+++||.
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 2589999999996 34 48999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-07 Score=81.92 Aligned_cols=86 Identities=30% Similarity=0.413 Sum_probs=69.7
Q ss_pred CCccCCCC--CCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc--c----cCCcccceEEEcHHH
Q 039265 349 SAFCGNGS--LSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV--I----ADPHVLPATHVSNDA 420 (708)
Q Consensus 349 ~~~c~~~~--~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~ 420 (708)
...|.++. +...+++|||+||.|+ .|.+.+|..+++++||.++|++++....... . .....+|.+.|+..+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g-~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRG-GCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECC-CcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 45587776 6678899999999999 8999999999999999999999887632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCce
Q 039265 421 GLKIKSYINSTATPM 435 (708)
Q Consensus 421 g~~l~~~~~~~~~~~ 435 (708)
|+.|++++.++.+.+
T Consensus 109 g~~l~~~~~~~~~v~ 123 (126)
T cd00538 109 GEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHhcCCceE
Confidence 999999998765443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.1e-07 Score=81.31 Aligned_cols=73 Identities=25% Similarity=0.375 Sum_probs=60.1
Q ss_pred CCCCcccCcEEEeecCCCcc-----hhhHHHHHHHcCCcEEEEecCCC-CC-cc-cccC---CcccceEEEcHHHHHHHH
Q 039265 357 LSGIDVKGKVVLCERGGGIA-----RIFKGEQVKNAGGAAMILMNDEP-NA-FS-VIAD---PHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 357 ~~~~~~~g~ivl~~~g~~~~-----~~~k~~~~~~~ga~~~i~~~~~~-~~-~~-~~~~---~~~~p~~~i~~~~g~~l~ 425 (708)
+.+.+++|||+|++|| .|. |.+|..+++++||.++|+||+.. .+ .. ...+ ...+|++.|+..+|+.|+
T Consensus 50 ~~~~d~~GkIaLI~RG-~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 50 YICGGMAGKICLIERG-GNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred ccCCCcCccEEEEECC-CCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 4456799999999999 999 99999999999999999999972 22 11 1122 358999999999999999
Q ss_pred HHHhc
Q 039265 426 SYINS 430 (708)
Q Consensus 426 ~~~~~ 430 (708)
+.+..
T Consensus 129 ~~l~~ 133 (139)
T cd04817 129 AALGQ 133 (139)
T ss_pred HHhcC
Confidence 98854
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=77.96 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=64.6
Q ss_pred CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCC-cccc-----cCCcccceEEEcHHHH
Q 039265 348 ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA-FSVI-----ADPHVLPATHVSNDAG 421 (708)
Q Consensus 348 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~-~~~~-----~~~~~~p~~~i~~~~g 421 (708)
..+.|.+. +..+++|+|+|+.|| .|.|.+|..+++++||.++|++|+.... .... .....+|+++++.++|
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG-~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRG-GCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 35679765 557899999999999 9999999999999999999999876532 1111 1234799999999999
Q ss_pred HHHHHHHhc
Q 039265 422 LKIKSYINS 430 (708)
Q Consensus 422 ~~l~~~~~~ 430 (708)
+.|+.++..
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999888753
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=100.96 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=58.0
Q ss_pred EEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC-CcEEEEccCCCC-----CCCCCCHHHHHHHHHHhcCceEEE
Q 039265 204 AGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG-VDVLSISIGGGS-----VPFFNDSIAVGSFAAIQKGIFVSC 277 (708)
Q Consensus 204 ~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g-~dVIn~S~G~~~-----~~~~~~~~~~a~~~a~~~Gv~vV~ 277 (708)
.-+||+|+|..|-+- . .....+..|+.+....= --++-.||+... .+.+-+.+..-...|..+|+.+++
T Consensus 289 ~A~AP~A~I~lvvap--~---~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 289 HAMAPKANIDLVVAP--N---PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hccCccCceEEEEcC--C---CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 689999999998762 1 12222222332222111 134445666421 122334555556678899999999
Q ss_pred ecCCCCCCCCc--------ccCCCCceEEEcc
Q 039265 278 AAGNSGPFNST--------ISNEAPWILTVGA 301 (708)
Q Consensus 278 AAGN~g~~~~~--------~~~~~p~vitVga 301 (708)
|+|.+|....+ +++.+|++.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876643 4578999999998
|
|
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-06 Score=81.05 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCccCCCCCCC---CcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc-c-----CCcccceEEEcHH
Q 039265 349 SAFCGNGSLSG---IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI-A-----DPHVLPATHVSND 419 (708)
Q Consensus 349 ~~~c~~~~~~~---~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~-~-----~~~~~p~~~i~~~ 419 (708)
.+.|.+....+ ..+.|+|+|++|| .|.|.+|..+++++||.++|++|+.......+ . ....||+++|+..
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG-~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRG-NCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECC-CCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 46798766644 7899999999999 99999999999999999999999865422221 1 1358999999999
Q ss_pred HHHHHHHHHhcCCC
Q 039265 420 AGLKIKSYINSTAT 433 (708)
Q Consensus 420 ~g~~l~~~~~~~~~ 433 (708)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.4e-05 Score=68.97 Aligned_cols=91 Identities=25% Similarity=0.402 Sum_probs=68.7
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc--chhhHHHHHHHcCCcEEEEecCCCCCccc-----c
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI--ARIFKGEQVKNAGGAAMILMNDEPNAFSV-----I 405 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~--~~~~k~~~~~~~ga~~~i~~~~~~~~~~~-----~ 405 (708)
..+.++++.+... +..+...+++|||+|+.++ .| .+.+|..+++++||.++|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g-~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~ 92 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRD-DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGT 92 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcC-CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccc
Confidence 3467788876431 1123356799999999999 77 88999999999999999999865432211 1
Q ss_pred --cCCcccceEEEcHHHHHHHHHHHhcCC
Q 039265 406 --ADPHVLPATHVSNDAGLKIKSYINSTA 432 (708)
Q Consensus 406 --~~~~~~p~~~i~~~~g~~l~~~~~~~~ 432 (708)
.....+|++.|+.++|+.|.+.++.+.
T Consensus 93 ~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 93 EDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999997654
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00053 Score=62.99 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCCcccCcEEEeecCCCc------chhhH-------HHHHHHcCCcEEEEecCCC-------CCcccc-cCCcccceEEE
Q 039265 358 SGIDVKGKVVLCERGGGI------ARIFK-------GEQVKNAGGAAMILMNDEP-------NAFSVI-ADPHVLPATHV 416 (708)
Q Consensus 358 ~~~~~~g~ivl~~~g~~~------~~~~k-------~~~~~~~ga~~~i~~~~~~-------~~~~~~-~~~~~~p~~~i 416 (708)
...+++|||+++.++ .| .+..| ...++++||.++|++|... .+.... .....+|++.|
T Consensus 34 ~~~~v~GKIvlv~~~-~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 34 PAGAVKGKIVFFNQP-MVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred chhhcCCeEEEecCC-ccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 456899999999998 99 88888 7999999999999998532 121111 12346999999
Q ss_pred cHHHHHHHHHHHhcCCCceE
Q 039265 417 SNDAGLKIKSYINSTATPMA 436 (708)
Q Consensus 417 ~~~~g~~l~~~~~~~~~~~~ 436 (708)
+.+++..|...++.+..+++
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999987765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.035 Score=48.20 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=64.2
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEcCceEEEE
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRS 701 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~ 701 (708)
..+.+++|+|.|..+..|++.......-.++++|..-.+.+ |++.++.|+|.+.... +.+.+.|.+..++..+.+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~----g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL----GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC----ceEEEEEEEEECCeEEEE
Confidence 67778899999999999998765433455677787777887 9999999999964432 578999999887788888
Q ss_pred eEEEEe
Q 039265 702 PISVRL 707 (708)
Q Consensus 702 P~~~~~ 707 (708)
|+-...
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 887653
|
|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.004 Score=59.70 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=56.7
Q ss_pred CCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc------------------c-------------cc-
Q 039265 359 GIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS------------------V-------------IA- 406 (708)
Q Consensus 359 ~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~------------------~-------------~~- 406 (708)
..+++|||+|++++ .|.+.+|..+++++||+++|+|++..+... . ..
T Consensus 51 gv~v~GkIvLvr~G-~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLVRAG-KISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEEECC-CCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 45789999999999 899999999999999999999987421100 0 00
Q ss_pred --CCcccceEEEcHHHHHHHHHHHhcC
Q 039265 407 --DPHVLPATHVSNDAGLKIKSYINST 431 (708)
Q Consensus 407 --~~~~~p~~~i~~~~g~~l~~~~~~~ 431 (708)
....||+..|+..+++.|+..+.-.
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999998543
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.016 Score=53.36 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=51.6
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc------------------chhhHHHHHHHcCCcEEEE
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI------------------ARIFKGEQVKNAGGAAMIL 394 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~------------------~~~~k~~~~~~~ga~~~i~ 394 (708)
....|++|.+..-. ...|....+...|++|||||+.++ .| .+..|..+++++||.++|+
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g-~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIi 95 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRN-DPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLI 95 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcC-CCCcccccccccccccccccCHHHHHHHHHHCCCcEEEE
Confidence 34678888875432 234777778888999999999988 66 4678999999999999999
Q ss_pred ecCCCC
Q 039265 395 MNDEPN 400 (708)
Q Consensus 395 ~~~~~~ 400 (708)
+++...
T Consensus 96 i~~~~~ 101 (142)
T cd04814 96 VHELAP 101 (142)
T ss_pred EeCCCc
Confidence 998653
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.017 Score=62.07 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=67.2
Q ss_pred CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc------ccccCCcccceEEEcHHHHHHHHHHHhcC
Q 039265 358 SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF------SVIADPHVLPATHVSNDAGLKIKSYINST 431 (708)
Q Consensus 358 ~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 431 (708)
....+++|++++.|| .|.|.+|...++++||.++++.|+..+-. ........||++++.+++++.+.....++
T Consensus 90 ~~~kl~~~~~~v~RG-nC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 90 LQSKLSGKVALVFRG-NCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CCccccceeEEEecc-cceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 345689999999999 99999999999999999999999854322 22233468999999999999999888777
Q ss_pred CCceEEEEec
Q 039265 432 ATPMATIIFK 441 (708)
Q Consensus 432 ~~~~~~i~~~ 441 (708)
.+.++.+-.+
T Consensus 169 ~~V~~~lYaP 178 (541)
T KOG2442|consen 169 DNVELALYAP 178 (541)
T ss_pred CeEEEEEECC
Confidence 7776665443
|
|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.015 Score=53.25 Aligned_cols=64 Identities=30% Similarity=0.455 Sum_probs=50.4
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc------------chhhHHHHHHHcCCcEEEEecCCCC
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI------------ARIFKGEQVKNAGGAAMILMNDEPN 400 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~------------~~~~k~~~~~~~ga~~~i~~~~~~~ 400 (708)
.+-+++|.+.... ...|....+...+++|||||+.++ .| .+..|..++.++||.++|++++...
T Consensus 22 v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g-~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSG-GPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcC-CCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4567888775432 245776677788999999999998 65 3678999999999999999998554
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.023 Score=52.95 Aligned_cols=65 Identities=31% Similarity=0.488 Sum_probs=49.8
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCC-----------------CcchhhHHHHHHHcCCcEEEEec
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGG-----------------GIARIFKGEQVKNAGGAAMILMN 396 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~-----------------~~~~~~k~~~~~~~ga~~~i~~~ 396 (708)
.+-+++|.+.... ...|....+...+++|||||+.++. .|.+..|..++.++||+++|+|+
T Consensus 20 vtg~lVfvGyGi~--~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYGIT--APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCCcC--ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 3567788775432 2447666677889999999998762 16778999999999999999998
Q ss_pred CCCC
Q 039265 397 DEPN 400 (708)
Q Consensus 397 ~~~~ 400 (708)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8644
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.028 Score=55.82 Aligned_cols=56 Identities=38% Similarity=0.562 Sum_probs=44.0
Q ss_pred CceeEEEecCCCCCCCCccCCCCC-----CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCC
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSL-----SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDE 398 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~ 398 (708)
.+-+++|.+. |....+ ...+++|||+|+.++ .+.+.+|..+++.+||+++|+|++.
T Consensus 45 v~g~lVyvny--------G~~~D~~~L~~~gvdv~GKIvLvr~G-~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 45 VTAELVYANY--------GSPEDFEYLEDLGIDVKGKIVIARYG-GIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred ceEEEEEcCC--------CcHHHHHHHhhcCCCCCCeEEEEECC-CccHHHHHHHHHHcCCEEEEEEeCc
Confidence 3567777763 322222 256799999999998 8888899999999999999999764
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.17 Score=41.61 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=37.1
Q ss_pred ceEEEEEEEecCCCc-eeEEEEEeCCCCeEEEeecCeEE-EccCCcEEEEEEEEEecCCCC
Q 039265 622 AQTFTRTVTNVGQVY-SSYAVNVVAPQGVVVSVKPSKLY-FSKVNQKATYSVTFTRSGSGY 680 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~-~ty~~~~~~~~~~~v~v~p~~~~-~~~~~~~~~~~v~~~~~~~~~ 680 (708)
..+++++|+|.|... ...++++..|.|-.+...|..+. +++ |++++++++|+++....
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~p-G~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPP-GESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-T-TSEEEEEEEEEE-TT--
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCC-CCEEEEEEEEECCCCCC
Confidence 678889999999765 45788889999988777888775 555 99999999999987544
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.055 Score=49.85 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=36.4
Q ss_pred CcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCC
Q 039265 360 IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPN 400 (708)
Q Consensus 360 ~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~ 400 (708)
.+++|||+|++.| ...+..|..+++..||.|+|+|.+..+
T Consensus 37 V~v~GkIvi~RyG-~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLG-QAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEecc-CcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5799999999999 788999999999999999999988543
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.054 Score=49.30 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=73.9
Q ss_pred ceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc------c---
Q 039265 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV------I--- 405 (708)
Q Consensus 335 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~------~--- 405 (708)
.++++... ...+|... .+.-+..+.++|++|| .|+|..|..++.++||.++|+.++....... +
T Consensus 65 ~~~lV~ad-----Pp~aC~el-rN~~f~~d~vaL~eRG-eCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLAD-----PPHACEEL-RNEIFAPDSVALMERG-ECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred CcceeecC-----ChhHHHHH-hhcccCCCcEEEEecC-CceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 45555543 35668542 3455678899999999 9999999999999999999998765543322 1
Q ss_pred -cCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecc
Q 039265 406 -ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKG 442 (708)
Q Consensus 406 -~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 442 (708)
.+...+|++++-..+|..++.-++....+-+.|..+-
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 1346899999999999877777776666666666554
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.4 Score=37.79 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=41.8
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSG 679 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~ 679 (708)
.-.+++.|.|....+.+|++++..++++.+......+++.+ |++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 56788899999999999999999988999866568999988 9999999999987764
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.39 Score=50.63 Aligned_cols=80 Identities=21% Similarity=0.125 Sum_probs=61.7
Q ss_pred CccCCCCC---CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc----CCcccceEEEcHHHHH
Q 039265 350 AFCGNGSL---SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA----DPHVLPATHVSNDAGL 422 (708)
Q Consensus 350 ~~c~~~~~---~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~ 422 (708)
++|.+... ........++|+.|| .|.|.+|..+++.+|..++|+||+......... ....++.++++...|+
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg-~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRG-GCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEcc-CCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 45654433 134467789999999 899999999999999999999998766543332 2457889999999999
Q ss_pred HHHHHHhc
Q 039265 423 KIKSYINS 430 (708)
Q Consensus 423 ~l~~~~~~ 430 (708)
.|..|...
T Consensus 142 ~l~~~~~~ 149 (348)
T KOG4628|consen 142 LLSSYAGR 149 (348)
T ss_pred HHHHhhcc
Confidence 99887543
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.8 Score=38.88 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=52.3
Q ss_pred CceEEEEEEEecCCCceeEEEEEeCC----CC--------------e------EEEeecCeEEEccCCcEEEEEEEEEec
Q 039265 621 PAQTFTRTVTNVGQVYSSYAVNVVAP----QG--------------V------VVSVKPSKLYFSKVNQKATYSVTFTRS 676 (708)
Q Consensus 621 ~~~~~~~tv~n~g~~~~ty~~~~~~~----~~--------------~------~v~v~p~~~~~~~~~~~~~~~v~~~~~ 676 (708)
..+++++.|+|.+++..+|.+.+... .| + -|++ |..+++++ +++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~-~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPP-NESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECC-CCEEEEEEEEEcC
Confidence 38899999999999999999887521 11 0 1222 55599988 9999999999998
Q ss_pred CCCCCCCceEEEEEEEE
Q 039265 677 GSGYTSGQFAQGYITWV 693 (708)
Q Consensus 677 ~~~~~~~~~~~G~i~~~ 693 (708)
...- .+.+-|.|.++
T Consensus 105 ~~~f--~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAF--DGIILGGIYFS 119 (121)
T ss_pred CCCc--CCEEEeeEEEE
Confidence 8755 37888888775
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=89.62 E-value=1.9 Score=40.52 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=43.8
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc------------------chhhHHHHHHHcCCcEEEE
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI------------------ARIFKGEQVKNAGGAAMIL 394 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~------------------~~~~k~~~~~~~ga~~~i~ 394 (708)
....++||.+..-..... .-.++...|++|||||+..++.. ....|...++++||.++|+
T Consensus 21 ~~~~elVFvGyGi~ape~--~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 21 LKDSPLVFVGYGIVAPEY--GWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred cccCCEEEeccCccCccc--CcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 345678887755322111 11256678999999999876210 1224999999999999999
Q ss_pred ecCCC
Q 039265 395 MNDEP 399 (708)
Q Consensus 395 ~~~~~ 399 (708)
+.+..
T Consensus 99 v~~~~ 103 (157)
T cd04821 99 VHETE 103 (157)
T ss_pred EeCCC
Confidence 97743
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.43 E-value=4.6 Score=44.00 Aligned_cols=80 Identities=21% Similarity=0.164 Sum_probs=63.1
Q ss_pred ceEEEEEEEecCCCcee-EEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc----Cc
Q 039265 622 AQTFTRTVTNVGQVYSS-YAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS----AK 696 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~t-y~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~----~~ 696 (708)
.++....+.|.|+.+.| -++++..|.|-.+.|.|.++---+++++.++++|++.+....+ +-|+=+|+-++ ..
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~a--GdY~i~i~~ksDq~s~e 475 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGA--GDYRITITAKSDQASSE 475 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCC--CcEEEEEEEeecccccc
Confidence 88899999999988766 5799999999999999997765556999999999999887663 66776777664 24
Q ss_pred eEEEEeE
Q 039265 697 YSVRSPI 703 (708)
Q Consensus 697 ~~~~~P~ 703 (708)
.++|+-+
T Consensus 476 ~tlrV~V 482 (513)
T COG1470 476 DTLRVVV 482 (513)
T ss_pred ceEEEEE
Confidence 5566543
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=85.06 E-value=9.4 Score=34.10 Aligned_cols=68 Identities=16% Similarity=0.060 Sum_probs=48.0
Q ss_pred ceEEEEEEEecCCCceeEEEEEeC---CCC----eEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEE
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVA---PQG----VVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWV 693 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~---~~~----~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~ 693 (708)
..+.+++|+|.++.+..+.+.+.. ... -.+-++|..+.+.+ |+++++.| +.....+. +.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~--~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPI--DRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-S--SS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCC--CceEEEEEEEE
Confidence 567788999999988888888774 111 24678999999998 99999999 77544333 23444455554
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm | Back alignment and domain information |
|---|
Probab=82.72 E-value=8 Score=33.58 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=42.1
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGS 678 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 678 (708)
.....++|+|.++...-|++....|.... |.|..-.+.+ |+++++.|++.+...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i~p-~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGIIEP-GESVEITITFQPFDF 72 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE-T-TEEEEEEEEE-SSST
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEECC-CCEEEEEEEEEeccc
Confidence 57778899999999999999988888765 5699888888 999999999998543
|
These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A .... |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.46 E-value=1 Score=52.51 Aligned_cols=24 Identities=42% Similarity=0.812 Sum_probs=22.3
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCC
Q 039265 106 SNFGKGVIIGILDGGINPDHPSFS 129 (708)
Q Consensus 106 g~~G~Gv~VaVIDtGid~~Hp~f~ 129 (708)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999999886
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.85 E-value=19 Score=39.49 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=52.9
Q ss_pred ceEEEEEEEecCCCceeEEEEEe-CCCCeEEEeec-----CeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVV-APQGVVVSVKP-----SKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS 694 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~-~~~~~~v~v~p-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~ 694 (708)
+..|++++.|.|..+.+|.+++. .|.+.+..+.- .++.+.+ |+++.++|.+.++..... +.|.=.|+-++
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~na~p--G~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSLNATP--GTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCCCCCC--CceeEEEEEec
Confidence 77899999999999999999999 68876665543 3567777 999999999999875442 44444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 708 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-109 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 4e-98 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-14 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 8e-13 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 6e-11 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-08 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 6e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 8e-08 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 8e-08 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 8e-08 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 8e-08 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 9e-08 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 9e-08 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 9e-08 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 9e-08 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 1e-07 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 1e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-07 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 2e-07 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 2e-07 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 2e-07 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 2e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-07 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 3e-07 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 4e-07 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 6e-07 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 7e-07 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 7e-07 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 8e-07 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 9e-07 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 9e-07 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 9e-07 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 9e-07 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 9e-07 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 9e-07 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 1e-06 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 2e-06 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 3e-06 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 3e-06 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 3e-06 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 5e-06 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 5e-06 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 5e-06 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 5e-06 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 6e-06 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 6e-06 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 9e-06 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 1e-05 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 2e-05 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 2e-05 | ||
| 1thm_A | 279 | Crystal Structure Of Thermitase At 1.4 Angstroms Re | 6e-05 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 1e-04 | ||
| 1tec_E | 279 | Crystallographic Refinement By Incorporation Of Mol | 3e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 3e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 3e-04 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 5e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 672 bits (1735), Expect = 0.0
Identities = 262/643 (40%), Positives = 364/643 (56%), Gaps = 48/643 (7%)
Query: 87 TTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF 146
TT S FLG V + S +++G+LD GI P+ PSF DEG PPP KWKG C+
Sbjct: 1 TTRSWDFLGFPLT--VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 147 S---TCNNKLIGARTFNIEGNVKGTEP--PIDVDGHGTHVAGTAAGAFVKNAESLGNAKG 201
S CN K+IGAR+++I + + P D +GHGTH A TAAG V A G G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 202 TAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGS-VPFFNDS 260
TA G P A +A YKVC+ C+++D+LA D AI DGVD++S+S+GG + +F D+
Sbjct: 119 TARGGVPLARIAAYKVCWNDG--CSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDA 176
Query: 261 IAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEF 320
IA+GSF A+++GI S +AGN GP T ++ +PW+L+V AST+DR V ++GN + F
Sbjct: 177 IAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSF 236
Query: 321 DGESV--FQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARI 378
G S+ F + +P + K S FC + S++ +KGK+V+CE G
Sbjct: 237 QGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFG---- 292
Query: 379 FKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATI 438
E K+ GAA +LM AD + LP++ + + L YI S +P AT
Sbjct: 293 -PHEFFKSLDGAAGVLMTSNT---RDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGAT- 347
Query: 439 IFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNP-KSI 497
IFK T I N+ AP VVSFSSRGPN A+ ++KPDI GPG+ ILAAW ++
Sbjct: 348 IFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL 407
Query: 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPAD 557
FNI+SGTSM+CPH++GIA +K+ +P WSPAAIKSALMTTA +N P
Sbjct: 408 FNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF--------NPQA 459
Query: 558 IFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHRP----------V 607
FA G+GHVNP +A PGLVYD DY+ +LCG GY+ + V + V
Sbjct: 460 EFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRV 519
Query: 608 AQLNYPSFSVTLGP----AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKV 663
LNYPSF +++ P Q F RT+T+V S+Y + APQG+ +SV P+ L F+ +
Sbjct: 520 WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGL 579
Query: 664 NQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISVR 706
+ ++++T S G + W + VRSPI++
Sbjct: 580 GDRKSFTLTVRGS----IKGFVVSASLVWSDGVHYVRSPITIT 618
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 673 bits (1738), Expect = 0.0
Identities = 245/655 (37%), Positives = 345/655 (52%), Gaps = 47/655 (7%)
Query: 87 TTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF 146
TTH+ FL L+ G+W S G+ VI+ +LD GI P+ SF D+GMP P +WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 147 ------STCNNKLIGARTFNIEGNVKG------TEPPIDVDGHGTHVAGTAAGAFVKNAE 194
S CN KLIGA FN D DGHGTH A AG F K
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 195 SLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV 254
G A GTA G+AP A LA+YK F SDL+A +D A+ DGVD++SIS G +
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEG--TFTSDLIAAMDQAVADGVDMISISYGYRFI 178
Query: 255 PFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKL 314
P + D+I++ SF A+ KG+ VS +AGN GP +++N +PWIL V + DR+ T L
Sbjct: 179 PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 315 GNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGG 374
GN + G S+F + F P++Y S + + + +V+C+ G
Sbjct: 239 GNGLKIRGWSLFPARAFV-RDSPVIYNKTLSDCSSEELLSQV---ENPENTIVICDDNGD 294
Query: 375 IARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATP 434
+ + + A A I ++++P F + P V+ G ++ +Y+ ++ TP
Sbjct: 295 FSD--QMRIITRARLKAAIFISEDPGVF--RSATFPNPGVVVNKKEGKQVINYVKNSVTP 350
Query: 435 MATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAW-----FEPLD 489
ATI F+ T + AP V + S+RGP+ + GI KPDI+ PG+ ILAA+ +
Sbjct: 351 TATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIG 410
Query: 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIV 549
N + + + SGTSMA PH +GIAA+LK++HP WSP+AI+SA+MTTAD L+ + I
Sbjct: 411 TNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIK 470
Query: 550 DE-TLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHR--- 605
D + A +GAGHV+P+RA DPGLVYD P DY+ LC L +++++ +
Sbjct: 471 DSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSAS 530
Query: 606 -----PVAQLNYPSFSVTLG-------PAQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSV 653
P A LNYPSF Q F RTVTNVG+ ++Y + AP+ +SV
Sbjct: 531 HNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISV 590
Query: 654 KPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSA--KYSVRSPISVR 706
P L F N+K +Y++T G G ITWV +SVRSPI
Sbjct: 591 SPQILVFKNKNEKQSYTLTIRYIGD--EGQSRNVGSITWVEQNGNHSVRSPIVTS 643
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 524 bits (1350), Expect = e-175
Identities = 121/623 (19%), Positives = 217/623 (34%), Gaps = 68/623 (10%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFST----------CN 150
+ +++ G G ++ ++D G + +H ++ + K + + N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 151 NKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYA 210
+K+ ++ +G HGTHV+G +G NA S G P A
Sbjct: 68 DKVAYYHDYSKDG------KTAVDQEHGTHVSGILSG----NAPSETKEPYRLEGAMPEA 117
Query: 211 HLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPF--FNDSIAVGSFAA 268
L + +V + + + AI G V+++S G ++ + D A
Sbjct: 118 QLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYA 177
Query: 269 IQKGIFVSCAAGNSGP---FNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESV 325
KG+ + +AGN + P VG S + A ++
Sbjct: 178 KSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVR 237
Query: 326 FQPKDFPQTPLPLVYAG-----MNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFK 380
+ D +P++ A G DVKGK+ L ER G I K
Sbjct: 238 VKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIER-GDIDFKDK 296
Query: 381 GEQVKNAGGAAMILMNDEPNAFSV-IADPHVLPATHVSNDAGLKIKSYINSTATPMATII 439
+ K AG +++ +++ F + + + +PA +S GL +K T T AT
Sbjct: 297 IAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNATP- 355
Query: 440 FKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFN 499
V+ + + FSS G + G +KPDI PG IL++ + +
Sbjct: 356 ---KVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSV---------ANNKYA 401
Query: 500 IMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIV--DETLRPAD 557
+SGTSM+ P ++GI LL+ + P S + A + M+ + ++
Sbjct: 402 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFS 461
Query: 558 IFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILV-----HRPVAQLNY 612
GAG V+ +A+ + + D L + + V +L Y
Sbjct: 462 PRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHNKSDKPQELYY 519
Query: 613 PSFSVTLGPAQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVT 672
+ T V S + + A V+V FSK
Sbjct: 520 QATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMK--- 576
Query: 673 FTRSGSGYTSGQFAQGYITWVSA 695
+G F +G++ +
Sbjct: 577 ---------NGYFLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 8e-37
Identities = 87/488 (17%), Positives = 150/488 (30%), Gaps = 105/488 (21%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
I I+D G + H + G + S N
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNA-------NNVTGT-NNSGTGN----------------W 56
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAP--YAHLAIYKVCFGGDVDCT 226
P + + HGTHVAGT A N +G G+ P A++ I KV F
Sbjct: 57 YQPGNNNAHGTHVAGTIAAI--------ANNEGV-VGVMPNQNANIHIVKV-FNEAGWGY 106
Query: 227 ESDLLAGLDAAIED-GVDVLSISIGG-GSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGP 284
S L+A +D + G +V+++S+GG GS +++ G+ + AAGN+G
Sbjct: 107 SSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIAAAGNAGD 162
Query: 285 FNSTISNEAPWILTVGASTLDR-------------------SIVATAKLGNREEFDGESV 325
+ + +++V A + +I++T +G D
Sbjct: 163 SSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIG 222
Query: 326 FQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVK 385
Q +V +++ + +
Sbjct: 223 GQSYFSNG----VVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICL 278
Query: 386 NAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVI 445
E N+ SN A +++ A T+ +
Sbjct: 279 VERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV----PSV 334
Query: 446 GNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTS 505
A + + G + ++ + +GTS
Sbjct: 335 SVDRATGLALKAKLGQST----------------TVSNQ---------GNQDYEYYNGTS 369
Query: 506 MACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565
MA PH+SG+A L+ S HP S + +++AL TAD L++ G G G
Sbjct: 370 MATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDN-----------QTGYGM 418
Query: 566 VNPSRAND 573
+N A
Sbjct: 419 INAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 8e-32
Identities = 73/277 (26%), Positives = 110/277 (39%), Gaps = 53/277 (19%)
Query: 51 NVISGFAAKLTEEEVQDMKKKNGFVSARPER-------------KVRLQTTHSPSFLGLH 97
++I A K+ +++ + + KV ++T
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 98 QGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGAR 157
+W G G+ IGI+D GI+ HP K+IG
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQG---------------------KVIGWV 165
Query: 158 TFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKV 217
F V G P D +GHGTHVA AAG + + G GMAP A L KV
Sbjct: 166 DF-----VNGKTTPYDDNGHGTHVASIAAG-------TGAASNGKYKGMAPGAKLVGIKV 213
Query: 218 CFGGDVDCTESDLLAGLDAAIED----GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGI 273
G + SD++ G+D A+++ G+ V+++S+G DS++ A G+
Sbjct: 214 -LNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGL 272
Query: 274 FVSCAAGNSGPFNSTISN--EAPWILTVGASTLDRSI 308
V AAGNSGP T+ + A ++TVGA I
Sbjct: 273 VVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVI 309
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-23
Identities = 60/236 (25%), Positives = 85/236 (36%), Gaps = 40/236 (16%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
FSSRGP LKP+++ PG I+AA + GT+MA PH++GI
Sbjct: 311 DFSSRGPTAD--NRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGI 368
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDP 574
AALL +HP W+P +K+AL+ TAD A GAG VN +A
Sbjct: 369 AALLLQAHPSWTPDKVKTALIETAD----------IVKPDEIADIAYGAGRVNAYKAAYY 418
Query: 575 GLVYDIQPDDYIPYLCGLGYSDKEVGILVHRPVAQLNYPSFSVTLGPAQTFTRTVTNVGQ 634
+ Y V+ S T+ A T T+
Sbjct: 419 DNYAKLTFTGY---------------------VSNKGSQSHQFTISGAGFVTATLYWDNS 457
Query: 635 VYSSYAVNVVAPQGVVVSVKPSKLY-----FSKVNQKATYSVTFTRSGSGYTSGQF 685
S + + P G V + Y T+++ S SG + Q
Sbjct: 458 G-SDLDLYLYDPNGNQVDYSYTAYYGFEKVGYYNPTAGTWTIKVV-SYSGSANYQV 511
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 4e-31
Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 47/212 (22%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
V + G V + +LD GI HP D ++G +F
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHP------------------DL-----NVVGGASF-- 50
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
V G D +GHGTHVAGT A N G G+AP L KV
Sbjct: 51 ---VAGEAYNTDGNGHGTHVAGTVAAL--------DNTTGV-LGVAPSVSLYAVKV-LNS 97
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAG 280
+ S +++G++ A +G+DV+++S+GG S ++ A +G+ V AAG
Sbjct: 98 SGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGVVVVAAAG 153
Query: 281 NSGPFNSTISNE----APWILTVGASTLDRSI 308
NSG ST + ++ VGA + +
Sbjct: 154 NSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNR 185
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 31/117 (26%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS G + +++ PG + + + P + + ++GTSMA PH++G
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTY---------PTNTYATLNGTSMASPHVAGA 229
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
AAL+ S HP S + +++ L +TA L + G G +N A
Sbjct: 230 AALILSKHPNLSASQVRNRLSSTATYLGSSFYY--------------GKGLINVEAA 272
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 54/219 (24%), Positives = 83/219 (37%), Gaps = 48/219 (21%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
VW+ S G G IIG++D G DHP ++ ++IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------RIIGGVNL-T 70
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
D +GHGTHVAGT A A G G+AP A L I K G
Sbjct: 71 TDYGGDETNFSDNNGHGTHVAGTVAAA--------ETGSGV-VGVAPKADLFIIKA-LSG 120
Query: 222 DVDCTESDLLAGLDAAIED------GVDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIF 274
D + + A++ + ++++S+GG + +D++ A+ +
Sbjct: 121 DGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVS 176
Query: 275 VSCAAGNSGPFNSTISNE-----APWILTVGASTLDRSI 308
V CAAGN G + ++ VGA D +
Sbjct: 177 VVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRL 215
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 22/96 (22%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
F++ + DI+ PG+ I + + S + +SGT+MA PH++G
Sbjct: 217 DFTNTNE--------EIDIVAPGVGIKSTY---------LDSGYAELSGTAMAAPHVAGA 259
Query: 515 AALLKSSHP-----YWSPAAIKSALMTTADLLNMNG 545
AL+ + S I + L+ A +
Sbjct: 260 LALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTA 295
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 49/212 (23%), Positives = 73/212 (34%), Gaps = 42/212 (19%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
+ G G+ I +LD G+N HP + + + F
Sbjct: 18 TLTSTTGGSGINIAVLDTGVNTSHPDLVN---------------------NVEQCKDF-T 55
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
D +GHGTHVAGTA + G+AP A L YKV
Sbjct: 56 GATTPINNSCTDRNGHGTHVAGTALADGGSDQ-------AGIYGVAPDADLWAYKV-LLD 107
Query: 222 DVDCTESDLLAGLDAAIEDGV-----DVLSISIGGGSV-PFFNDSIAVGSFAAIQKGIFV 275
D+ A + A + ++S+S+G + + ++ A KG+ +
Sbjct: 108 SGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLI 163
Query: 276 SCAAGNSGPFNSTISNEA--PWILTVGASTLD 305
AAGNSG TI P + V A
Sbjct: 164 VAAAGNSGYSQGTIGYPGALPNAIAVAALENV 195
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 446 GNSLAPTVVSFSSRGP----NLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIM 501
+ V +SSRG +I PG S+ + W +N +
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW---------YNGGYNTI 246
Query: 502 SGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAI 561
SGTSMA PH+SG+AA + + +P S ++S L A +++ G D +A
Sbjct: 247 SGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG----YGAAIGDDYAS 302
Query: 562 GAGHVN 567
G G
Sbjct: 303 GFGFAR 308
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 46/212 (21%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
+ + G V + ++D GI+ HP D K+ G + +
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHP------------------DL-----KVAGGASM-V 51
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
T P D + HGTHVAGT A N+ G G+AP A L KV G
Sbjct: 52 PSE---TNPFQDNNSHGTHVAGTVAAL--------NNSIGV-LGVAPSASLYAVKV-LGA 98
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAG 280
D S ++ G++ AI + +DV+++S+GG S ++ A+ G+ V AAG
Sbjct: 99 DGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASGVVVVAAAG 154
Query: 281 NSGPFNSTISNE----APWILTVGASTLDRSI 308
N G S+ + P ++ VGA
Sbjct: 155 NEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQR 186
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 31/117 (26%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP + D++ PG+SI + P + + +GTSMA PH++G
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNKYGAYNGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
AAL+ S HP W+ ++S+L T + D F G G +N A
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTT--------------KLGDSFYYGKGLINVQAA 273
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 44/210 (20%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
W + G I ++D G++ HP + + G DF
Sbjct: 23 AWDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIK-------GY-DF--------------- 59
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
V P+D++ HGTHVAG AA NA G AGMAP + +
Sbjct: 60 ---VDNDYDPMDLNNHGTHVAGIAAA-------ETNNATGI-AGMAPNTRILAVRA-LDR 107
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDSIAVGSFAAIQKGIFVSCAAG 280
+ T SD+ + A + G +V+++S+G +++ A KG V AAG
Sbjct: 108 NGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAG 163
Query: 281 NSGPFNSTISNEA--PWILTVGASTLDRSI 308
N+G +ST A ++ VGA +
Sbjct: 164 NNG--SSTTFEPASYENVIAVGAVDQYDRL 191
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 32/117 (27%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G + D++ PG+ I++ + + MSGTSMA PH++G+
Sbjct: 193 SFSNYGTWV--------DVVAPGVDIVSTI---------TGNRYAYMSGTSMASPHVAGL 235
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
AALL S + I+ A+ TAD + G +N A
Sbjct: 236 AALLASQGR--NNIEIRQAIEQTADKI-------------SGTGTYFKYGRINSYNA 277
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 57/313 (18%), Positives = 98/313 (31%), Gaps = 61/313 (19%)
Query: 6 YIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEV 65
Y+V +++ +E L + + + ++ GF K++ + +
Sbjct: 78 YVVVLKEETHLSQSER------TARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLL 131
Query: 66 QDMKKKNGFVSARPERKVRLQTTHSPSFLGL------HQGMGVWKESNFGKGVIIGILDG 119
+ K + V Q+ L ++ + G V + +LD
Sbjct: 132 ELALKLPHVDYIEEDSSVFAQSIPW----NLERITPPRYRADEYQPPDGGSLVEVYLLDT 187
Query: 120 GINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGT 179
I DH GR + N E + D HGT
Sbjct: 188 SIQSDHREIE------------GRVMVTDFEN-------VPEEDGTRFHRQASKCDSHGT 228
Query: 180 HVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE 239
H+AG + G AG+A A + +V T S L GL+ +
Sbjct: 229 HLAGVVS--------------GRDAGVAKGASMRSLRV-LNCQGKGTVSGTLIGLEFIRK 273
Query: 240 D------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTIS-NE 292
G V+ + + GG N + + G+ + AAGN S
Sbjct: 274 SQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNFRDDACLYSPAS 329
Query: 293 APWILTVGASTLD 305
AP ++TVGA+
Sbjct: 330 APEVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 1e-13
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D+ PG I+ A ++ + F SGTS A H++GIAA++ S+ P + A ++
Sbjct: 360 DLFAPGEDIIGAS-------SDCSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELR 412
Query: 532 SALMTTA 538
L+ +
Sbjct: 413 QRLIHFS 419
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-27
Identities = 60/297 (20%), Positives = 95/297 (31%), Gaps = 71/297 (23%)
Query: 47 YSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERKVRLQTTHSPSFLGLHQGM------ 100
Y +K I + V +KK G + + L S G Q
Sbjct: 28 YQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWG 86
Query: 101 -------GVWKESNF-GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNK 152
VW ++ + + +LD G++ DHP D
Sbjct: 87 IERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHP------------------DL---AAN 125
Query: 153 LIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHL 212
+ + D +GHGTHV GT A N G G+AP +
Sbjct: 126 IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGV-VGVAPGVQI 176
Query: 213 AIYKVCFGGDVDCTESDLLAGLDAAIED--------------------GVDVLSISIGG- 251
+V + SD+ G++ AI +V+S+S+GG
Sbjct: 177 YSVRV-LDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGP 235
Query: 252 GSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSI 308
+ D I A GI + A+GN G + + P ++ VGA + +I
Sbjct: 236 ADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 288
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 43/130 (33%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+R P ++ PG+ IL+ + P + + GT+MA PH+SG+
Sbjct: 290 SFSNRQP----------EVSAPGVDILSTY---------PDDSYETLMGTAMATPHVSGV 330
Query: 515 AALLKSSH-------------PYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAI 561
AL+++++ S ++ L TAD L G
Sbjct: 331 VALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA-----------DY 379
Query: 562 GAGHVNPSRA 571
G G V + A
Sbjct: 380 GYGVVRAALA 389
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 44/208 (21%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
G GV + +LD GI+ HP D + G +F
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIS-THP------------------DL-----NIRGGASF-- 49
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
V G D +GHGTHVAGT A N+ G G+AP A L KV G
Sbjct: 50 ---VPGEPSTQDGNGHGTHVAGTIAAL--------NNSIGV-LGVAPSAELYAVKV-LGA 96
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDSIAVGSFAAIQKGIFVSCAAG 280
+ S + GL+ A +G+ V ++S+G S ++ +A +G+ V A+G
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASG 152
Query: 281 NSGPFNSTISNEAPWILTVGASTLDRSI 308
NSG + + + VGA+ + +
Sbjct: 153 NSGAGSISYPARYANAMAVGATDQNNNR 180
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 31/117 (26%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G DI+ PG+++ + + P S + ++GTSMA PH++G
Sbjct: 182 SFSQYGA--------GLDIVAPGVNVQSTY---------PGSTYASLNGTSMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
AAL+K +P WS I++ L TA L G+G VN A
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNL--------------YGSGLVNAEAA 267
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-27
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 45/211 (21%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
W + G G I I+D G+ +HP + + + G DF
Sbjct: 22 QAWDIAE-GSGAKIAIVDTGVQSNHPDLAGKVVG-------GW-DF-------------- 58
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
V P + +GHGTH AG AA N+ G AG AP A + +V
Sbjct: 59 ----VDNDSTPQNGNGHGTHCAGIAAA-------VTNNSTGI-AGTAPKASILAVRV-LD 105
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDSIAVGSFAAIQKGIFVSCAA 279
T + + G+ A + G V+S+S+GG ++ A KG V AA
Sbjct: 106 NSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVN----YAWNKGSVVVAAA 161
Query: 280 GNSGPFNSTISNEA--PWILTVGASTLDRSI 308
GN+G N+ + A + V ++ + +
Sbjct: 162 GNAG--NTAPNYPAYYSNAIAVASTDQNDNK 190
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 32/117 (27%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G + D+ PG SI + + P S + +SGTSMA PH++G+
Sbjct: 192 SFSTYGSWV--------DVAAPGSSIYSTY---------PTSTYASLSGTSMATPHVAGV 234
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
A LL S S + I++A+ TAD + G VN +A
Sbjct: 235 AGLLASQGR--SASNIRAAIENTADKI-------------SGTGTYWAKGRVNAYKA 276
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 3e-26
Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 30/224 (13%)
Query: 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170
+ I+D D G + + DF + + N+ E
Sbjct: 214 DGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDF--------LSISVNVHDEGNVLEV 265
Query: 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVC-FGGDVDCTESD 229
HGTHV+ A+G ++ G+AP A + + T +
Sbjct: 266 VGMSSPHGTHVSSIASGN---------HSSRDVDGVAPNAKIVSMTIGDGRLGSMETGTA 316
Query: 230 LLAGLDAAIE-----DGVDVLSISIGGGSVPFFNDSIA-VGSFAAIQKGIFVSCAAGNSG 283
L+ + +E +DV+++S G + + I + + + G+ +AGN G
Sbjct: 317 LVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHG 376
Query: 284 PFNSTISN----EAPWILTVGASTLDRSIVATAKLGNREEFDGE 323
P T+ P ++ VGA + A+ RE+ G
Sbjct: 377 PALCTVGTPPDISQPSLIGVGAY--VSPQMMEAEYAMREKLPGN 418
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 31/230 (13%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHL 511
V +++SR P G + PG +I + S +M+GTSMA PH+
Sbjct: 418 NVYTWTSRDP--CIDGGQGVTVCAPGGAIASVP-------QFTMSKSQLMNGTSMAAPHV 468
Query: 512 SGIAALLKSS----HPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567
+G ALL S + +SP +IK A+ TA L D FA G G +N
Sbjct: 469 AGAVALLISGLKQQNIEYSPYSIKRAISVTAT------------KLGYVDPFAQGHGLLN 516
Query: 568 PSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHRPVAQLNYPSFSVTLGPAQTFTR 627
+A + + D+ + + +G + + + R Q N ++V + P +
Sbjct: 517 VEKAFEHLTEHRQSKDNMLRFSVRVGNNADKG--IHLRQGVQRNSIDYNVYIEPIFYNDK 574
Query: 628 TVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSG 677
+ + +N++A Q V + + + +V +G
Sbjct: 575 EADPKDKFNFNVRLNLIASQPWVQC--GA--FLDLSYGTRSIAVRVDPTG 620
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 5e-25
Identities = 48/219 (21%), Positives = 70/219 (31%), Gaps = 36/219 (16%)
Query: 102 VWKESNF-GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
G+G I+ + D G++ S F K+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------------AF---RGKITALYALG 57
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVC-F 219
N D +GHGTHVAG+ G G+ GMAP A+L +
Sbjct: 58 RTNN------ANDTNGHGTHVAGSVLGN--------GST---NKGMAPQANLVFQSIMDS 100
Query: 220 GGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAA 279
GG + S+L A G + + S G + + + + AA
Sbjct: 101 GGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAA 160
Query: 280 GNSGPFNSTISNEA--PWILTVGASTLDRSIVATAKLGN 316
GN GP TIS +TVGA+ R +
Sbjct: 161 GNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNI 199
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 9e-16
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 21/136 (15%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFN---IMSGTSMAC 508
V FSSRGP G +KPD++ PG IL+A ++ + + M GTSMA
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 509 PHLSGIAALLKSSHP-----YWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGA 563
P ++G A L+ P+ +K+AL+ A + + G
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPN-----------GNQGW 307
Query: 564 GHVNPSRANDPGLVYD 579
G V ++ + V +
Sbjct: 308 GRVTLDKSLNVAYVNE 323
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 49/229 (21%), Positives = 82/229 (35%), Gaps = 57/229 (24%)
Query: 102 VWKESNF-GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
VW ++ + + +LD G++ DHP + + +
Sbjct: 20 VWSITDGSVSVIQVAVLDTGVDYDHPDLAA---------------------NIAWCVSTL 58
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
D +GHGTHV GT A N G G+AP + +V
Sbjct: 59 RGKVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGV-VGVAPGVQIYSVRV-LD 108
Query: 221 GDVDCTESDLLAGLDAAI--------------------EDGVDVLSISIGGGSV-PFFND 259
+ SD+ G++ AI +D +V+S+S+GG + + D
Sbjct: 109 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYD 168
Query: 260 SIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSI 308
I A GI + A+GN G + + P ++ VGA + +I
Sbjct: 169 MII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNI 213
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 43/130 (33%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+R P ++ PG+ IL+ + P + + GT+MA PH+SG+
Sbjct: 215 SFSNRQP----------EVSAPGVDILSTY---------PDDSYETLMGTAMATPHVSGV 255
Query: 515 AALLKSSH-------------PYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAI 561
AL+++++ S ++ L TAD L G
Sbjct: 256 VALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA-----------DY 304
Query: 562 GAGHVNPSRA 571
G G V + A
Sbjct: 305 GYGVVRAALA 314
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-24
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 43/210 (20%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
E G +I+ ++D G++ HP D ++I
Sbjct: 146 QLWEEASGTNIIVAVVDTGVDGTHP------------------DL---EGQVIAGYRPAF 184
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKV---- 217
+ + GTHVAGT A + KG G+AP A + +
Sbjct: 185 DEELPAGTDSSYGGSAGTHVAGTIAAK--------KDGKGI-VGVAPGAKIMPIVIFDDP 235
Query: 218 -CFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIFV 275
GG+ + + AG+ A + G V++ S GG ++ A++ G+ +
Sbjct: 236 ALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVM 291
Query: 276 SCAAGNSGPFNSTISNEA--PWILTVGAST 303
+AGN+ +S A P ++ V A
Sbjct: 292 VVSAGNNTS-DSHHQYPAGYPGVIQVAALD 320
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 2e-16
Identities = 44/261 (16%), Positives = 80/261 (30%), Gaps = 38/261 (14%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAW---------FEPLDFNTNPKSIFNIMSGTS 505
FSSR + + PG++IL+ + ++ GTS
Sbjct: 330 GFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTS 381
Query: 506 MACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565
MA PH++G+ A+L P P I+ L TA N NG G G
Sbjct: 382 MAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWD-----------HDTGYGL 430
Query: 566 VNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHRPVAQLNYPSFSVTLGPAQTF 625
V A + P + +D + V P ++ + + A+T
Sbjct: 431 VKLDAA-----LQGPLPTQGGVEEFQVVVTDAKGNFGV--PTVFVSMMRDNGSCYYAKTG 483
Query: 626 TRTVTNVGQVYS-SYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQ 684
+ + S +Y + V P ++ P + ++ G
Sbjct: 484 PDGIARFPHIDSGTYDIFVGGPDHWDRALAPYD--GESIPGGYAIALRMAEERQASFVGF 541
Query: 685 FAQGYITWVSAKYSVRSPISV 705
T ++ ++ +
Sbjct: 542 GVSPDATQLNVNFNSTLQVKF 562
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 33/225 (14%), Positives = 70/225 (31%), Gaps = 30/225 (13%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGA----- 156
+ ++ + I I+DG + F + W + T +
Sbjct: 41 LHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQ 100
Query: 157 ------RTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYA 210
+ +E + T+ I ++ H HV T G G+AP
Sbjct: 101 GLKGKEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQ---------EHSPV-FGIAPNC 150
Query: 211 HLAIYKVCFGGDVD----CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSI---AV 263
+ + + +L +D A+E G +++ + + + I A+
Sbjct: 151 RVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAI 210
Query: 264 GSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSI 308
+ + GN+ + + P L VGA+ +D +
Sbjct: 211 K--KCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTP 253
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
FS+ G N K I+ PG IL A P ++GTSMA P ++GI
Sbjct: 255 HFSNWGGNNT-----KEGILAPGEEILGAQ--PCT------EEPVRLTGTSMAAPVMTGI 301
Query: 515 AALLKSSHPY----WSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSR 570
+ALL S A+++AL+ TA + + G VN
Sbjct: 302 SALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPERCLRGFVNIPG 352
Query: 571 A 571
A
Sbjct: 353 A 353
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 57/237 (24%)
Query: 103 WKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIE 162
+ + I I+D G+ +H + + N
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKNHDDLKN-------NFSTDSKNLVPLNG-----FRGTEP 186
Query: 163 GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGD 222
D GHGT V+G + A G G+AP +Y+V G
Sbjct: 187 EETGDVHDVNDRKGHGTMVSGQTS------------ANGKLIGVAPNNKFTMYRV--FGS 232
Query: 223 VDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFA-------------AI 269
+ + A DG V++IS+G + ND A
Sbjct: 233 KKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAK 292
Query: 270 QKGIFVSCAAGNSGPFNSTISNEA------------------PWILTVGASTLDRSI 308
+K V AAGN G + ++TVG++ ++
Sbjct: 293 KKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQKSNL 349
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 6e-15
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 19/124 (15%)
Query: 455 SFSSRGPN---LASPGILKPDIIGPGLSILAAWFEPLDFN---TNPKSIFNIMSGTSMAC 508
FS+ G N +A+PG + G+ N T + +GT++A
Sbjct: 351 EFSNFGMNYTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQAGTALAT 410
Query: 509 PHLSGIAALLKSS-HPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567
P +SG AL+ H P L N G G ++
Sbjct: 411 PKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSRY------------GHGELD 458
Query: 568 PSRA 571
+A
Sbjct: 459 VYKA 462
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 48/200 (24%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G GV ++D G+ H F GR F +
Sbjct: 30 GSGVTAFVIDTGVLNTHNEFG------------GR---------ASSGYDF-----IDND 63
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D +GHGTHVAGT G+ G+A ++ +V + S
Sbjct: 64 YDATDCNGHGTHVAGTIG--------------GSTYGVAKNVNVVGVRV-LNCSGSGSNS 108
Query: 229 DLLAGLDAAIEDGV--DVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN 286
++AG++ + V ++S+GGG+ +D++ AA+ GI AAGN
Sbjct: 109 GVIAGINWVKNNASGPAVANMSLGGGASQATDDAVN----AAVAAGITFVVAAGNDNSNA 164
Query: 287 STIS-NEAPWILTVGASTLD 305
S A +TVG++T +
Sbjct: 165 CNYSPARAADAITVGSTTSN 184
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G L DI PG SI ++W+ S N +SGTSMA PH++G+
Sbjct: 189 SFSNYGTCL--------DIYAPGSSITSSWY-------TSNSATNTISGTSMASPHVAGV 233
Query: 515 AALLKSSHPYWSPAAIKSALMTTA 538
AAL +P SPA + + L T A
Sbjct: 234 AALYLDENPNLSPAQVTNLLKTRA 257
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 45/204 (22%), Positives = 66/204 (32%), Gaps = 45/204 (22%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G V + +LD I DH GR + E +
Sbjct: 25 GSLVEVYLLDTSIQSDHREIE------------GRVMVT-------DFENVPEEDGTRFH 65
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D HGTH+AG + G AG+A A + +V T S
Sbjct: 66 RQASKCDSHGTHLAGVVS--------------GRDAGVAKGASMRSLRV-LNCQGKGTVS 110
Query: 229 DLLAGLDAAIED------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNS 282
L GL+ + G V+ + + GG N + + G+ + AAGN
Sbjct: 111 GTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGNF 166
Query: 283 GPFNSTIS-NEAPWILTVGASTLD 305
S AP ++TVGA+
Sbjct: 167 RDDACLYSPASAPEVITVGATNAQ 190
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 443 TVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMS 502
T + ++ G + D+ PG I+ A ++ + F S
Sbjct: 187 TNAQDQPVTLGTLGTNFGRCV--------DLFAPGEDIIGAS-------SDCSTCFVSQS 231
Query: 503 GTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTA 538
GTS A H++GIAA++ S+ P + A ++ L+ +
Sbjct: 232 GTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS 267
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 5e-22
Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 48/203 (23%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G GV ++D G+N +H F GR + F V
Sbjct: 28 GFGVTAYVIDTGVNNNHEEFG------------GR---------SVSGYDF-----VDND 61
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D +GHGTHVAGT G+ G+A ++ +V T S
Sbjct: 62 ADSSDCNGHGTHVAGTIG--------------GSQYGVAKNVNIVGVRV-LSCSGSGTTS 106
Query: 229 DLLAGLDAAIEDGV--DVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN 286
+++G+D ++ V ++S+GGG + ++ AIQ G+ AAGNS
Sbjct: 107 GVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAAGNSNADA 162
Query: 287 STIS-NEAPWILTVGASTLDRSI 308
S P +TVG++T S
Sbjct: 163 CNTSPARVPSGVTVGSTTSSDSR 185
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G + D+ PG I +AW + +SGTSMA PH++G+
Sbjct: 187 SFSNWGSCV--------DLFAPGSQIKSAW---------YDGGYKTISGTSMATPHVAGV 229
Query: 515 AALLKSSHPYWSPAAIKSALMTTA 538
AAL + +P + L + A
Sbjct: 230 AALYLQENNGLTPLQLTGLLNSRA 253
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 1e-21
Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 50/200 (25%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G+GV + ++D GI H F GR ++ G
Sbjct: 30 GRGVNVYVIDTGIRTTHREFG------------GRARVG-----------YDALGG---- 62
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D +GHGTHVAGT G G+A +L +V + + S
Sbjct: 63 -NGQDCNGHGTHVAGTIG--------------GVTYGVAKAVNLYAVRV-LDCNGSGSTS 106
Query: 229 DLLAGLDAAIEDGVD--VLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN 286
++AG+D + V ++S+GGG ++++ +I G+ + AAGN
Sbjct: 107 GVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAAGVVYAVAAGNDNANA 162
Query: 287 STIS-NEAPWILTVGASTLD 305
S LTVGA+T
Sbjct: 163 CNYSPARVAEALTVGATTSS 182
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 15/84 (17%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G + D+ PG SI +AW+ + ++GTSMA PH++G+
Sbjct: 187 SFSNYGSCV--------DLFAPGASIPSAWY-------TSDTATQTLNGTSMATPHVAGV 231
Query: 515 AALLKSSHPYWSPAAIKSALMTTA 538
AAL +P +PA++ SA++ A
Sbjct: 232 AALYLEQNPSATPASVASAILNGA 255
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 6e-21
Identities = 30/237 (12%), Positives = 64/237 (27%), Gaps = 53/237 (22%)
Query: 103 WKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIE 162
++ V++ ++D G+ ++ +F +
Sbjct: 37 MSLTDKNTPVVVSVVDSGVAFIGG----------------------LSDSEFAKFSFTQD 74
Query: 163 GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGD 222
G+ + + HGT +A A ++ G+ P+A ++ +V G
Sbjct: 75 GSPFPVKKSEALYIHGTAMASLIA------------SRYGIYGVYPHALISSRRVIPDGV 122
Query: 223 VDCTES--DLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAG 280
D + + +++IS G V + + S + A G
Sbjct: 123 QDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVG 182
Query: 281 NSGPFNSTISNEAP-----------------WILTVGASTLDRSIVATAKLGNREEF 320
N G +S + ++ V A R G
Sbjct: 183 NDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITG 239
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 28/120 (23%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHL 511
++ S G N DI PG +I P + SGTS A +
Sbjct: 235 GGITGSRFGNN-------WVDIAAPGQNITF---------LRPDAKTGTGSGTSEATAIV 278
Query: 512 SGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
SG+ A + S +P + +K L+ +AD +++ +N +A
Sbjct: 279 SGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKVT------------EGRVLNAEKA 326
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 48/205 (23%), Positives = 70/205 (34%), Gaps = 56/205 (27%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G G + ++D G+ HP F GR + +
Sbjct: 31 GAGACVYVIDTGVEDTHPDFE------------GR-----------AKQIKSYAST---- 63
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D GHGTH AGT G+A + KV + S
Sbjct: 64 --ARDGHGHGTHCAGTIG--------------SKTWGVAKKVSIFGVKV-LDDSGSGSLS 106
Query: 229 DLLAGLDAAIEDGVD-------VLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281
+++AG+D D V S+S+GGG N + A G+FV+ AAGN
Sbjct: 107 NIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA----RLQSSGVFVAVAAGN 162
Query: 282 SGPFNSTIS-NEAPWILTVGASTLD 305
+ S P + TVGA+ +
Sbjct: 163 DNRDAANTSPASEPTVCTVGATDSN 187
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
+FS+ G + DI PG SI + W N +SGTSMA PH++G+
Sbjct: 192 TFSNYGRVV--------DIFAPGTSITSTW---------IGGRTNTISGTSMATPHIAGL 234
Query: 515 AALLKSSHPYWSPAAIKSALMTTA 538
AA L S A+ + T +
Sbjct: 235 AAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 6e-20
Identities = 50/205 (24%), Positives = 69/205 (33%), Gaps = 56/205 (27%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G+G + ++D GI HP F GR +
Sbjct: 30 GQGSCVYVIDTGIEASHPEFE------------GRAQM-----------VKTYYYS---- 62
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
D +GHGTH AGT G+A L KV + S
Sbjct: 63 --SRDGNGHGTHCAGTVG--------------SRTYGVAKKTQLFGVKV-LDDNGSGQYS 105
Query: 229 DLLAGLDAAIEDGVD-------VLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281
++AG+D D + V S+S+GGG N + A G+ V+ AAGN
Sbjct: 106 TIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA----RLQSSGVMVAVAAGN 161
Query: 282 SGPFNSTIS-NEAPWILTVGASTLD 305
+ S P + TVGAS
Sbjct: 162 NNADARNYSPASEPSVCTVGASDRY 186
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G L DI GPG IL+ W +SGTSMA PH++G+
Sbjct: 191 SFSNYGSVL--------DIFGPGTDILSTW---------IGGSTRSISGTSMATPHVAGL 233
Query: 515 AALLKSSHPYWSPAAIKSALMTTA 538
AA L + + A+ + TA
Sbjct: 234 AAYLMTLGKT-TAASACRYIADTA 256
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 49/230 (21%), Positives = 80/230 (34%), Gaps = 40/230 (17%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSD------EGMPPPPAKWKGRCDFSTCNNKLI 154
VW G+ V++ ++D GI H + + + G + ++
Sbjct: 23 KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGD 81
Query: 155 GARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAI 214
+ G + D HG+HVAGT A N G AG+A A +
Sbjct: 82 WFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAV-------TNNRIGV-AGVAYGAKVVP 133
Query: 215 YKV--CFGGDVDCTESDLLAGLDAAI----------EDGVDVLSISIGGGSV--PFFNDS 260
+ GG +SD+ GL A + V+++S+G
Sbjct: 134 VRALGRCGG----YDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTM 189
Query: 261 IAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEA--PWILTVGASTLDRSI 308
I A + G V AAGN N++ + +L+VGA+T
Sbjct: 190 ID----RATRLGALVVVAAGNENQ-NASNTWPTSCNNVLSVGATTSRGIR 234
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS+ G ++ D+ PG IL+ ++ M+GTSMA PH+SG+
Sbjct: 236 SFSNYGVDV--------DLAAPGQDILSTV--DSGTRRPVSDAYSFMAGTSMATPHVSGV 285
Query: 515 AALLKS----SHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSR 570
AAL+ S + +PA +K L++T N A+G+G V+
Sbjct: 286 AALVISAANSVNKNLTPAELKDVLVSTTSPFN------------GRLDRALGSGIVDAEA 333
Query: 571 A 571
A
Sbjct: 334 A 334
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 82.5 bits (203), Expect = 1e-16
Identities = 40/221 (18%), Positives = 69/221 (31%), Gaps = 46/221 (20%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
+W + G GV+ I+D G++ ++ D +++
Sbjct: 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKD---------------------NFCAEGSWD 83
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
N +P + D HGT AG A G+ A ++ ++
Sbjct: 84 FNDNTNLPKPRLSDDYHGTRCAGEIAAK--------KGNNFCGVGVGYNAKISGIRI-LS 134
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQ---------K 271
GD+ T D A L + D D+ S S G + A+ K
Sbjct: 135 GDI--TTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSK 191
Query: 272 GIFVSCAAGNSGPFNSTIS----NEAPWILTVGASTLDRSI 308
G A+GN G + + + +T+GA
Sbjct: 192 GAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLH 232
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-06
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 492 TNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMN 544
N GTS A P +G+ LL ++P + ++ + +A L N
Sbjct: 259 DINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKN 311
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 1e-13
Identities = 39/216 (18%), Positives = 70/216 (32%), Gaps = 43/216 (19%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
W + G G+++ ILD GI +HP + P F +
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPG--------ASFDVNDQ--------- 71
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
+ + + ++ + HGT AG A N G+A A + ++ G
Sbjct: 72 -DPDPQPRYTQMNDNRHGTRCAGEVAAV-------ANNGVC-GVGVAYNARIGGVRMLDG 122
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQ---------K 271
D E A + + + S S G D A + A
Sbjct: 123 EVTDAVE----ARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGL 178
Query: 272 GIFVSCAAGNSGPFNSTIS----NEAPWILTVGAST 303
G A+GN G + + + + + L++ ++T
Sbjct: 179 GSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 9e-06
Identities = 12/80 (15%), Positives = 31/80 (38%)
Query: 492 TNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDE 551
+ +GTS + P +GI AL ++ + ++ ++ T+ ++N +
Sbjct: 248 DLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN 307
Query: 552 TLRPADIFAIGAGHVNPSRA 571
+ + G G ++
Sbjct: 308 GVGRKVSHSYGYGLLDAGAM 327
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 59/480 (12%), Positives = 135/480 (28%), Gaps = 145/480 (30%)
Query: 212 LAIYKVCFGGDVDCTESDLLAGLDAAIEDGV-DVLSISIGGGSVPFFNDSIAVGSFAAIQ 270
L++++ F + DC + ++D +LS D I + S A+
Sbjct: 22 LSVFEDAFVDNFDCKD----------VQDMPKSILS------KEEI--DHI-IMSKDAVS 62
Query: 271 KG--IFVS-CAAGNSGP---FNSTISNEAPWILT-VGASTLDRSIVATAKLGNREE-FDG 322
+F + + + ++++ + S++ + R+ ++
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 323 ESVFQPKDFP--------QTPL----P----LVYAGMNGKPESAFCGNGSLSGIDVKGKV 366
VF + + L P L+ G+ G G ++
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLG------SGKTWVALDVCLSYK 175
Query: 367 VLCERGGGIARIFKGEQVKNAGGAAMILMND-----EPNAFSVIADPHVLPATHVSNDAG 421
V C+ I + N+ + ++ +PN ++ +D H +
Sbjct: 176 VQCKMDFKIFWLNLKNC--NSPETVLEMLQKLLYQIDPN-WTSRSD-HSSNIKLRIHSIQ 231
Query: 422 LKIKSYINSTATPMATII------------FKG----------TVIGNSLAPTVVSFSSR 459
+++ + S ++ F + + L+ + S
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 460 GPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP-HLSGIAALL 518
+ S + + S+L + + P+ + P LS IA +
Sbjct: 292 DHH--SMTLTPDE----VKSLLLKYLD-CRPQDLPREVLTTN-------PRRLSIIAESI 337
Query: 519 KSSHP----YWSPAAIKSALMTTADLLNMNGERIVD---ETLRPADIFAIGAGHVNPSRA 571
+ W D L I++ L PA+ R
Sbjct: 338 R-DGLATWDNW--------KHVNCDKLT----TIIESSLNVLEPAEY-----------RK 373
Query: 572 NDPGLVYD---IQPDD-YIPY--LCGL-GYSDKE-----VGILVHRPVAQLNYPSFSVTL 619
+D + P +IP L + K V L + + ++++
Sbjct: 374 M-----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 8e-06
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 4/98 (4%)
Query: 346 KPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI 405
P + F + L +RGGG K G + ++ N VI
Sbjct: 87 NPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVI 146
Query: 406 ADPHV----LPATHVSNDAGLKIKSYINSTATPMATII 439
H + A + N G KI I I
Sbjct: 147 PMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIE 184
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 708 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.92 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.87 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 99.1 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.06 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.98 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.9 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.71 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.7 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.85 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.21 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.99 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.69 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.51 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 94.56 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 90.98 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 88.99 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 87.49 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 86.72 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 85.39 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 85.19 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 81.05 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-116 Score=1005.08 Aligned_cols=608 Identities=40% Similarity=0.651 Sum_probs=549.1
Q ss_pred ccCCCcccccccCCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCC------CCCceeEeeeecc
Q 039265 87 TTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS------TCNNKLIGARTFN 160 (708)
Q Consensus 87 ~~~s~~~~g~~~~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~------~~~~kv~g~~~~~ 160 (708)
++++|+|+||++...+|..+.+|+||+|||||||||++||+|.+.++++++.+|+|.|+.+ .||+|+++.++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 4678999999887889999999999999999999999999999999999999999999875 6999999999998
Q ss_pred cCCC-----CC-CCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHH
Q 039265 161 IEGN-----VK-GTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGL 234 (708)
Q Consensus 161 ~~~~-----~~-~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai 234 (708)
.++. .. +..++.|..||||||||||||+.+++.+++|++.|.+.||||+|+|++||+++.. ++..+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~--g~~~~~i~~Ai 158 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE--GTFTSDLIAAM 158 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT--EECHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC--CCCHHHHHHHH
Confidence 5431 11 1456889999999999999999988888888888889999999999999999988 79999999999
Q ss_pred HHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEc
Q 039265 235 DAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKL 314 (708)
Q Consensus 235 ~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~ 314 (708)
+||+++|+||||||||+...++..+++..++++|.++|++||+||||+|+...++++.+||+|+|||++.++.|...+.+
T Consensus 159 ~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~l 238 (649)
T 3i6s_A 159 DQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238 (649)
T ss_dssp HHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEE
T ss_pred HHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEe
Confidence 99999999999999998877788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcc--cCcEEEeecCCCcchhhHHHHHHHcCCcEE
Q 039265 315 GNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDV--KGKVVLCERGGGIARIFKGEQVKNAGGAAM 392 (708)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~ 392 (708)
++++.+.+.++|..... ...+|+++.. ....|.+..++..++ +|||++|.|+ .|.+.+|..+++++|+.++
T Consensus 239 gng~~~~g~sl~~~~~~-~~~~plv~~~-----~~~~C~~~~l~~~~vdl~GkIvlc~~g-~~~~~~k~~~~~~~Ga~g~ 311 (649)
T 3i6s_A 239 GNGLKIRGWSLFPARAF-VRDSPVIYNK-----TLSDCSSEELLSQVENPENTIVICDDN-GDFSDQMRIITRARLKAAI 311 (649)
T ss_dssp TTSCEEEEECCCSSCBC-EEEEEEECCT-----TTTTCCCHHHHTTSSSGGGCEEEECCC-SCHHHHHHHHHHHTCSEEE
T ss_pred CCCcEEeeeecccCccc-CcceeeEecc-----cccccccccccccccccCCcEEEEeCC-CccHHHHHHHHHhcCceEE
Confidence 99999999999887643 6679999876 356798887777777 9999999999 9999999999999999999
Q ss_pred EEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCc
Q 039265 393 ILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPD 472 (708)
Q Consensus 393 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPD 472 (708)
|++|+. .....+.+.+|.+.|+..+|+.|++|+++..+++++|.+..+..+..+.+.++.||||||+...++++|||
T Consensus 312 i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPD 388 (649)
T 3i6s_A 312 FISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPD 388 (649)
T ss_dssp EECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCC
T ss_pred EEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCe
Confidence 999986 44556788999999999999999999999999999999999999888999999999999999878999999
Q ss_pred eeeCCCcEEeeecCCC----CCCCC-CCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCcc
Q 039265 473 IIGPGLSILAAWFEPL----DFNTN-PKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGER 547 (708)
Q Consensus 473 I~APG~~I~sa~~~~~----~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~ 547 (708)
|+|||++|+++|+... ...+. +...|..+||||||||||||+||||||+||+|+|++||++||+||+++++.+.+
T Consensus 389 I~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~ 468 (649)
T 3i6s_A 389 ILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKP 468 (649)
T ss_dssp EEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSB
T ss_pred EEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCc
Confidence 9999999999998743 11111 336899999999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCCCCCCccCCCCCCcCCCCCCcccccCCCCCcccccccCCCCcceeEEEecCC----c----cccccCccccc
Q 039265 548 IVDET-LRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHRP----V----AQLNYPSFSVT 618 (708)
Q Consensus 548 ~~~~~-~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~n~ps~~~~ 618 (708)
+.+.. +.++.++.||+|+||+.+|++||||||+..+||+.|||+++|+..+++.++++. | .+||||||++.
T Consensus 469 i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~~~~~lNyPs~~~~ 548 (649)
T 3i6s_A 469 IKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPSADLNYPSFIAL 548 (649)
T ss_dssp CEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCCCCCCCCCSSEEEE
T ss_pred ccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCCchhhcCCCcEEee
Confidence 88764 678889999999999999999999999999999999999999999998887654 2 58999999998
Q ss_pred C-C-Cc-----eEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEE
Q 039265 619 L-G-PA-----QTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYIT 691 (708)
Q Consensus 619 ~-~-~~-----~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~ 691 (708)
+ . +. ++|+|||||||+...+|+++++.|.|++|+|+|++|+|.+.+|+++|+|+|+...... ..+.||+|+
T Consensus 549 ~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~--~~~~fg~l~ 626 (649)
T 3i6s_A 549 YSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEG--QSRNVGSIT 626 (649)
T ss_dssp ECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC-----CCCEEEEE
T ss_pred cccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCC--CceEEEEEE
Confidence 6 3 35 8999999999998899999999999999999999999998899999999999875443 368999999
Q ss_pred EEc--CceEEEEeEEEEeC
Q 039265 692 WVS--AKYSVRSPISVRLQ 708 (708)
Q Consensus 692 ~~~--~~~~~~~P~~~~~~ 708 (708)
|++ +.|.||+||+|+|.
T Consensus 627 w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 627 WVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEETTSCCEEEEEEEEEEC
T ss_pred EEcCCCCeEEEEeEEEEEc
Confidence 999 99999999999974
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-106 Score=929.42 Aligned_cols=593 Identities=43% Similarity=0.714 Sum_probs=503.2
Q ss_pred ccCCCcccccccCCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCC---CCCceeEeeeecccCC
Q 039265 87 TTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS---TCNNKLIGARTFNIEG 163 (708)
Q Consensus 87 ~~~s~~~~g~~~~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~---~~~~kv~g~~~~~~~~ 163 (708)
++++|+|+||++ .+|.+..+|+||+|||||||||++||+|.++++++++.+|+|.|+.+ .||+|+++.++|..+.
T Consensus 1 tt~s~~flGl~~--~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~ 78 (621)
T 3vta_A 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGR 78 (621)
T ss_dssp CCSHHHHTTCCT--TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSS
T ss_pred CCCChhHcCCCc--cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCC
Confidence 468899999964 58899999999999999999999999999999999999999999987 7999999999998765
Q ss_pred CCCC--CCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC
Q 039265 164 NVKG--TEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG 241 (708)
Q Consensus 164 ~~~~--~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g 241 (708)
.... ..+++|++||||||||||||+...+.+..|.+.+.++||||+|+|++||+|++. ++..+++++||++|+++|
T Consensus 79 ~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~--g~~~~di~~a~~~a~~~g 156 (621)
T 3vta_A 79 PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND--GCSDTDILAAYDDAIADG 156 (621)
T ss_dssp SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETT--EECHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCC--CCCHHHHHHHHHHHHHhC
Confidence 4322 556889999999999999999888888888888889999999999999999998 899999999999999999
Q ss_pred CcEEEEccCCCC-CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCcee
Q 039265 242 VDVLSISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEF 320 (708)
Q Consensus 242 ~dVIn~S~G~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~ 320 (708)
+||||||||+.. ..+..++++.++++|.++|+++|+||||+|+...++++.+||+++|++++.++.+...+.++++..+
T Consensus 157 ~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~ 236 (621)
T 3vta_A 157 VDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSF 236 (621)
T ss_dssp CSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEE
T ss_pred CCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCcee
Confidence 999999999864 3456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCCCceeEEEecCCCCC-----CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEe
Q 039265 321 DGESVFQPKDFPQTPLPLVYAGMNGKP-----ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILM 395 (708)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~ 395 (708)
.+.+++... ...+++++....... ....|.+..+++.+++|||++|.++ +..+..+...+|+.++|++
T Consensus 237 ~~~s~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~----~~~~~~~~~~~Ga~gvi~~ 309 (621)
T 3vta_A 237 QGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS----FGPHEFFKSLDGAAGVLMT 309 (621)
T ss_dssp EEBCCCCSC---CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSC----CCHHHHHHHHTTCSEEEEE
T ss_pred eeeecccCC---CcccccccccccccccccccccccccccccccccccceEEEEecC----CChhHHhhhhcceeEEEEE
Confidence 888776432 345666655443221 3456888889999999999999765 4467778888999999999
Q ss_pred cCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceee
Q 039265 396 NDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIG 475 (708)
Q Consensus 396 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~A 475 (708)
++.... .+.+.+|...++..++..++.|+.....+.+.+... ........+.++.||||||+...++++||||+|
T Consensus 310 ~~~~~~----~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~-~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~A 384 (621)
T 3vta_A 310 SNTRDY----ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKS-TTILNASAPVVVSFSSRGPNRATKDVIKPDISG 384 (621)
T ss_dssp CSCCSS----CCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCC-EEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEE
T ss_pred ecCCCc----ccccccceEEECHHHHHHHHHHHhccCCcceEEecc-eEeccCCCCceeeecCCCCCCCCCCeecccccc
Confidence 875442 356789999999999999999999988888776443 344456788999999999998778999999999
Q ss_pred CCCcEEeeecCCC-CCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCC
Q 039265 476 PGLSILAAWFEPL-DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLR 554 (708)
Q Consensus 476 PG~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~ 554 (708)
||++|+|+++... .........|..+||||||||||||+||||||+||+|+|++||++||+||++++..+ .
T Consensus 385 PG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~--------~ 456 (621)
T 3vta_A 385 PGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF--------N 456 (621)
T ss_dssp ECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTT--------C
T ss_pred CCcceEeecCccccccCcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccC--------C
Confidence 9999999998644 233344578999999999999999999999999999999999999999999886553 3
Q ss_pred CCCCCccCCCCCCcCCCCCCcccccCCCCCcccccccCCCCcceeEEEecCCc----------cccccCcccccCCC---
Q 039265 555 PADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHRPV----------AQLNYPSFSVTLGP--- 621 (708)
Q Consensus 555 ~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~n~ps~~~~~~~--- 621 (708)
+..+++||+|+||+.+|++||||||+..+||+.|+|+++|+.++++.+++... .+||||||++.+..
T Consensus 457 ~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~ 536 (621)
T 3vta_A 457 PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQT 536 (621)
T ss_dssp TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEEECCSSCC
T ss_pred CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEEEccCCCc
Confidence 56779999999999999999999999999999999999999999988876432 68999999986542
Q ss_pred -ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEcCceEEE
Q 039265 622 -AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVR 700 (708)
Q Consensus 622 -~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~~~~~~~ 700 (708)
+++|+|||||+|....||+++++.|.|++|+|+|++|+|.+.+|+++|+|+|+... . ..++||+|+|+|+.|.||
T Consensus 537 ~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~~--~--~~~~~g~l~w~d~~h~Vr 612 (621)
T 3vta_A 537 FNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--K--GFVVSASLVWSDGVHYVR 612 (621)
T ss_dssp EEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEECC--C--SSEEEEEEEEECSSCCCE
T ss_pred eEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEecC--C--CceEEEEEEEEcCCEEEE
Confidence 78999999999999999999999999999999999999998899999999998743 2 479999999999999999
Q ss_pred EeEEEEe
Q 039265 701 SPISVRL 707 (708)
Q Consensus 701 ~P~~~~~ 707 (708)
+||+|+.
T Consensus 613 ~Pi~v~~ 619 (621)
T 3vta_A 613 SPITITS 619 (621)
T ss_dssp EEEEEEC
T ss_pred eCEEEEE
Confidence 9999986
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-80 Score=737.89 Aligned_cols=528 Identities=24% Similarity=0.352 Sum_probs=417.3
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccccccc---------------CC-CCCceeEeeeecccC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCD---------------FS-TCNNKLIGARTFNIE 162 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~---------------~~-~~~~kv~g~~~~~~~ 162 (708)
++.+|.++++|+||+|||||||||++||+|.+. ..|++.|. .+ +||+|++++++|..+
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 445999999999999999999999999999843 34555443 12 799999999999864
Q ss_pred CCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC--CCHHHHHHHHHHHHHC
Q 039265 163 GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD--CTESDLLAGLDAAIED 240 (708)
Q Consensus 163 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g--~~~~~i~~ai~~a~~~ 240 (708)
....|+.||||||||||||+...+.+. .+.+.||||+|+|++||+|+.. + +..+++++||++|+++
T Consensus 80 ------~~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~--g~~~~~~~i~~Ai~~Ai~~ 147 (926)
T 1xf1_A 80 ------GKTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVN--GLADYARNYAQAIRDAINL 147 (926)
T ss_dssp ------SCCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCS--CHHHHHHHHHHHHHHHHHT
T ss_pred ------CCCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCC--CCCCcHHHHHHHHHHHHHh
Confidence 223389999999999999987543321 2345899999999999999876 5 4567899999999999
Q ss_pred CCcEEEEccCCCC--CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCC---------------CcccCCCCceEEEcccc
Q 039265 241 GVDVLSISIGGGS--VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN---------------STISNEAPWILTVGAST 303 (708)
Q Consensus 241 g~dVIn~S~G~~~--~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~---------------~~~~~~~p~vitVga~~ 303 (708)
|+||||||||+.. .....+.+..++++|.++|++||+||||+|... ...++.+||+|+|||++
T Consensus 148 gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~ 227 (926)
T 1xf1_A 148 GAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYS 227 (926)
T ss_dssp TCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEB
T ss_pred CCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEeccc
Confidence 9999999999864 234567888899999999999999999999632 22345689999999999
Q ss_pred cCcceEEEEEc-CCCceeeeeeccCCCCC-CCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHH
Q 039265 304 LDRSIVATAKL-GNREEFDGESVFQPKDF-PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKG 381 (708)
Q Consensus 304 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~ 381 (708)
.++.+...+.+ +++....+.+++...++ ....+|+++... .|.+..+ .+++|||+||.|+ .|.+.+|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-------g~~~~~~--~~v~Gkivl~~rg-~~~~~~k~ 297 (926)
T 1xf1_A 228 PDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-------GTKEDDF--KDVKGKIALIERG-DIDFKDKI 297 (926)
T ss_dssp CSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-------SCSTTTT--TTCTTSEEEEECC-SSCHHHHH
T ss_pred cccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-------CCCccch--hhcCCeEEEEECC-CCCHHHHH
Confidence 99998888877 55555555555433333 456799998764 3765555 6899999999999 99999999
Q ss_pred HHHHHcCCcEEEEecCCCCCcc-cccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceE--eCCcCCCccccccC
Q 039265 382 EQVKNAGGAAMILMNDEPNAFS-VIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTV--IGNSLAPTVVSFSS 458 (708)
Q Consensus 382 ~~~~~~ga~~~i~~~~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~a~fSs 458 (708)
.+++++|+.++|++++...... ......++|+..++..+|+.|+. .+..+|+|..+. +.....+.++.|||
T Consensus 298 ~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~------~~~~ti~~~~~~~~~~~~~~~~~a~FSS 371 (926)
T 1xf1_A 298 AKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD------NPQKTITFNATPKVLPTASGTKLSRFSS 371 (926)
T ss_dssp HHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH------CSSCEEEECSSCEEEECSSCSBCCTTSC
T ss_pred HHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh------CCceEEEecccceecccCCcceeccccC
Confidence 9999999999999988654332 23346789999999999988873 345667776643 44566789999999
Q ss_pred CCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHH----hcCCCCCHHH----H
Q 039265 459 RGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLK----SSHPYWSPAA----I 530 (708)
Q Consensus 459 ~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~~s~~~----v 530 (708)
|||+. ++++||||+|||++|+++++. +.|..+||||||||||||+||||+ +.||+|+|+| |
T Consensus 372 rGp~~--~~~lKPDI~APG~~I~sa~~~---------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~I 440 (926)
T 1xf1_A 372 WGLTA--DGNIKPDIAAPGQDILSSVAN---------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLA 440 (926)
T ss_dssp CCBCT--TSCBSCCEEEECCCEEESSSC---------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHH
T ss_pred CCCCC--CCccCceEECCCCCEEeeccC---------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 99996 789999999999999999986 789999999999999999999995 5699999997 9
Q ss_pred HHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCCcccccCCCCCcccccccCCCCcceeEEEecCCcccc
Q 039265 531 KSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHRPVAQL 610 (708)
Q Consensus 531 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (708)
|++||+||+++...+. ...+++++||+|+||+.+|+++.+ ++|..+++...+.
T Consensus 441 ks~L~~TA~~~~~~~~------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~i~---------- 493 (926)
T 1xf1_A 441 KKVLMSSATALYDEDE------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSKVH---------- 493 (926)
T ss_dssp HHHHHHHSBCCEEGGG------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSCEE----------
T ss_pred HHHHHhcCCCcccCCC------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcceee----------
Confidence 9999999998764321 234577899999999999999854 5787766543321
Q ss_pred ccCcccccCCCceEEEEEEEecCCC--ceeEEEEEeC--CCCeEEEeecCe--------EEEccCCcEEEEEEEEEecC-
Q 039265 611 NYPSFSVTLGPAQTFTRTVTNVGQV--YSSYAVNVVA--PQGVVVSVKPSK--------LYFSKVNQKATYSVTFTRSG- 677 (708)
Q Consensus 611 n~ps~~~~~~~~~~~~~tv~n~g~~--~~ty~~~~~~--~~~~~v~v~p~~--------~~~~~~~~~~~~~v~~~~~~- 677 (708)
++. +....+++|||+|+|+. ..+|++++.. |.+..++|+|.. |++++ |++++|+|+|++..
T Consensus 494 -l~~----~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~a-g~~~~~~vt~~~~~~ 567 (926)
T 1xf1_A 494 -LNN----VSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPA-NSSKQVTVPIDASRF 567 (926)
T ss_dssp -EEE----ECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECT-TEEEEEEEEEECHHH
T ss_pred -ccc----cCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECC-CCEEEEEEEEEcCcc
Confidence 111 12367889999999985 4567777764 667777776654 55555 99999999999852
Q ss_pred -------CCCCCCceEEEEEEEE--cCceE-EEEeEEEE
Q 039265 678 -------SGYTSGQFAQGYITWV--SAKYS-VRSPISVR 706 (708)
Q Consensus 678 -------~~~~~~~~~~G~i~~~--~~~~~-~~~P~~~~ 706 (708)
.+. ..++||+|+|+ ++.|. ||+||++.
T Consensus 568 ~~~~~~~~~~--~~~~~G~i~~~~~~~~~~~v~~P~~~~ 604 (926)
T 1xf1_A 568 SKDLLAQMKN--GYFLEGFVRFKQDPTKEELMSIPYIGF 604 (926)
T ss_dssp HHHHHHHSTT--CEEEEEEEEEESSTTSCCCEEEEEEEE
T ss_pred chhhcccccC--CcEEEEEEEEEeCCCCCCEEEeeeEEE
Confidence 122 36899999999 45564 99999986
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-63 Score=556.86 Aligned_cols=365 Identities=32% Similarity=0.482 Sum_probs=291.3
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHH-----------hcC
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDM-----------KKK 71 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L-----------~~~ 71 (708)
+..|||.||+.... +...+.+++. +.+++++|+ .|+||+++++.+++++| +++
T Consensus 35 ~~~~iV~~~~~~~~---------~~~~~~~~~~------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~ 98 (539)
T 3afg_A 35 EVSTIIMFDNQADK---------EKAVEILDFL------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQL 98 (539)
T ss_dssp EEEEEEEESSHHHH---------HHHHHHHHHH------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCC
T ss_pred ceEEEEEECCCCCH---------HHHHHHHHhc------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccC
Confidence 35699999875421 1122334433 568999997 79999999999999999 899
Q ss_pred CCeEEEEeceeecccccCC--CcccccccCCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 039265 72 NGFVSARPERKVRLQTTHS--PSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTC 149 (708)
Q Consensus 72 ~~V~~V~~~~~~~~~~~~s--~~~~g~~~~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~ 149 (708)
|+|++|++++.+++..... ...+...++..+|..+++|+||+|||||||||++||+|.+
T Consensus 99 ~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------------------- 159 (539)
T 3afg_A 99 SGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------------------- 159 (539)
T ss_dssp TTEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT-------------------
T ss_pred CCeeEEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC-------------------
Confidence 9999999999887753321 1112222356799999999999999999999999999974
Q ss_pred CceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHH
Q 039265 150 NNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTES 228 (708)
Q Consensus 150 ~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~ 228 (708)
++++.++|..+ ...+.|++||||||||||||.... ..|.+.||||+|+|+.+|++++. + +..+
T Consensus 160 --~i~~~~d~~~~-----~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~--g~~~~~ 223 (539)
T 3afg_A 160 --KVIGWVDFVNG-----KTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQ--GSGSIS 223 (539)
T ss_dssp --TEEEEEETTTC-----CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTT--SEEEHH
T ss_pred --CEeeeEECCCC-----CCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCC--CCcCHH
Confidence 36667778754 345678999999999999987422 12335899999999999999876 5 7788
Q ss_pred HHHHHHHHHHHC----CCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCC--CcccCCCCceEEEccc
Q 039265 229 DLLAGLDAAIED----GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN--STISNEAPWILTVGAS 302 (708)
Q Consensus 229 ~i~~ai~~a~~~----g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~--~~~~~~~p~vitVga~ 302 (708)
++++||+||+++ |++|||||||........+.+..++.++.++|++||+||||+|+.. ..+++..+++|+|||+
T Consensus 224 ~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~ 303 (539)
T 3afg_A 224 DIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAV 303 (539)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeee
Confidence 999999999986 8999999999875545568899999999999999999999999864 3457888999999985
Q ss_pred ccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHH
Q 039265 303 TLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGE 382 (708)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~ 382 (708)
+.
T Consensus 304 ~~------------------------------------------------------------------------------ 305 (539)
T 3afg_A 304 DK------------------------------------------------------------------------------ 305 (539)
T ss_dssp CT------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCC
Q 039265 383 QVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPN 462 (708)
Q Consensus 383 ~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 462 (708)
.+.++.||||||+
T Consensus 306 -------------------------------------------------------------------~~~~a~fSs~Gp~ 318 (539)
T 3afg_A 306 -------------------------------------------------------------------YDVITDFSSRGPT 318 (539)
T ss_dssp -------------------------------------------------------------------TSCBCSSSCCCCC
T ss_pred -------------------------------------------------------------------CcccccccCCCCC
Confidence 1267899999999
Q ss_pred CCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccc
Q 039265 463 LASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 463 ~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~ 542 (708)
. ++++||||+|||++|+++++............|..++|||||||||||+||||+|++|+|++++||++|++||+++.
T Consensus 319 ~--~~~~kpdi~APG~~I~s~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~ 396 (539)
T 3afg_A 319 A--DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVK 396 (539)
T ss_dssp T--TCBCCCSEEEECSSEEEECCTTCCCSEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSS
T ss_pred C--CCCCcccEecCcCCEEeeccCCCCCCCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 8 68999999999999999986421001111236999999999999999999999999999999999999999999875
Q ss_pred cCCccccccCCCCCCCCccCCCCCCcCCCCCCc
Q 039265 543 MNGERIVDETLRPADIFAIGAGHVNPSRANDPG 575 (708)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 575 (708)
..+ .++..||+|+||+.+|++..
T Consensus 397 ~~~----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 397 PDE----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp GGG----------CSBTTTBTCBCCHHHHHTGG
T ss_pred CCC----------CCccCccCCccCHHHHhhhc
Confidence 321 25578999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-60 Score=518.68 Aligned_cols=343 Identities=26% Similarity=0.360 Sum_probs=280.7
Q ss_pred CCceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEece
Q 039265 2 NLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPER 81 (708)
Q Consensus 2 ~~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~ 81 (708)
++.+|||.||+... . ++++++. +.+++++|. .|++|+++++.+++++|+++|+|++|++++
T Consensus 1 ~~~~~iV~~~~~~~---~---------~~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~ 61 (395)
T 2z2z_A 1 NTIRVIVSVDKAKF---N---------PHEVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDH 61 (395)
T ss_dssp CEEEEEEEECTTTC---C---------HHHHHHT------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECC
T ss_pred CcEEEEEEECCCcc---H---------HHHHHHc------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEee
Confidence 46799999999743 1 1233333 678999998 599999999999999999999999999999
Q ss_pred eecccccCC-----------Cccccccc--CCcccccCCCCCc--cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccC
Q 039265 82 KVRLQTTHS-----------PSFLGLHQ--GMGVWKESNFGKG--VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF 146 (708)
Q Consensus 82 ~~~~~~~~s-----------~~~~g~~~--~~~~~~~g~~G~G--v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~ 146 (708)
.+++..... ...|++.. .+.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~--------------- 125 (395)
T 2z2z_A 62 QAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------------- 125 (395)
T ss_dssp EEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG---------------
T ss_pred eecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc---------------
Confidence 887643211 23455543 45689998 9999 99999999999999999753
Q ss_pred CCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-C
Q 039265 147 STCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-C 225 (708)
Q Consensus 147 ~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~ 225 (708)
+...++|..+.......+..|+.||||||||||+|.. + ..+ +.||||+|+|+.+|+++.. + +
T Consensus 126 ------~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~-n-------~~g-~~GvAp~a~l~~~kv~~~~--g~~ 188 (395)
T 2z2z_A 126 ------IAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALN-N-------DIG-VVGVAPGVQIYSVRVLDAR--GSG 188 (395)
T ss_dssp ------EEEEEECGGGCCBCCHHHHBCSSSHHHHHHHHHHCCC-S-------SSS-CCCSSTTCEEEEEECSCTT--SEE
T ss_pred ------cccCccccCCcccCCCCCCCCCCCCHHHHHHHHHeec-C-------CCc-eEEECCCCEEEEEEEecCC--CCc
Confidence 4445556543211001124688999999999999873 1 112 3799999999999999876 5 7
Q ss_pred CHHHHHHHHHHHHHC--------------------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCC
Q 039265 226 TESDLLAGLDAAIED--------------------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPF 285 (708)
Q Consensus 226 ~~~~i~~ai~~a~~~--------------------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~ 285 (708)
..+++++||+||+++ +++|||||||+... ...+..++.++.++|+++|+||||+|..
T Consensus 189 ~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~ 265 (395)
T 2z2z_A 189 SYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD---DSYLYDMIIQAYNAGIVIVAASGNEGAP 265 (395)
T ss_dssp EHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC---CHHHHHHHHHHHHTTCEEEEECCSSCCS
T ss_pred cHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCC
Confidence 788999999999998 99999999998632 3567778888999999999999999998
Q ss_pred CCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCc
Q 039265 286 NSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGK 365 (708)
Q Consensus 286 ~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ 365 (708)
...+|+..+++|+|||++.
T Consensus 266 ~~~~Pa~~~~vi~Vga~~~------------------------------------------------------------- 284 (395)
T 2z2z_A 266 SPSYPAAYPEVIAVGAIDS------------------------------------------------------------- 284 (395)
T ss_dssp SCCBTTTSTTEEEEEEECT-------------------------------------------------------------
T ss_pred CCCCccCCCCEEEEEEecC-------------------------------------------------------------
Confidence 8888999999999999521
Q ss_pred EEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEe
Q 039265 366 VVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVI 445 (708)
Q Consensus 366 ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 445 (708)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCC--
Q 039265 446 GNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHP-- 523 (708)
Q Consensus 446 ~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-- 523 (708)
.+.++.||+||| +|+|||++|+|+++. +.|..++|||||||||||++|||+|++|
T Consensus 285 ----~~~~a~fS~~G~----------~v~APG~~i~s~~~~---------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~ 341 (395)
T 2z2z_A 285 ----NDNIASFSNRQP----------EVSAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAYYQK 341 (395)
T ss_dssp ----TSCBCTTSCSSC----------SEEEECSSEEEEETT---------TEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCcccCCCC----------CEEeCCCCeeeecCC---------CceEecCCHHHHHHHHHHHHHHHHHhCccc
Confidence 126789999997 679999999999986 7899999999999999999999999999
Q ss_pred -----------CCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCC
Q 039265 524 -----------YWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDP 574 (708)
Q Consensus 524 -----------~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 574 (708)
.|++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 342 ~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 342 YGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred cccccccccccCCCHHHHHHHHHhhccccCCC-----------CCCCCccCceeCHHHHHHH
Confidence 999999999999999987432 3457899999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-57 Score=506.53 Aligned_cols=354 Identities=20% Similarity=0.225 Sum_probs=277.8
Q ss_pred CCceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhc-CCCeEEEEec
Q 039265 2 NLQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKK-KNGFVSARPE 80 (708)
Q Consensus 2 ~~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~-~~~V~~V~~~ 80 (708)
+++.|||++++.. .+.+++++. +.++++.|. .|++|+++++.+++++|++ +|+|++|+++
T Consensus 43 ~~~~yiv~~~~~~------------~~~~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~ 103 (471)
T 3t41_A 43 EELYYSVEYKNTA------------TFNKLVKKK------SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINAT 103 (471)
T ss_dssp CCEEEEEEESCHH------------HHHHHHHHH------TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEEC
T ss_pred CceEEEEEcCCHH------------HHHHHHHhC------CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEec
Confidence 3567888776632 123445544 677888986 5999999999999999999 9999999999
Q ss_pred eeecccccCC----------CcccccccC---CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCC
Q 039265 81 RKVRLQTTHS----------PSFLGLHQG---MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS 147 (708)
Q Consensus 81 ~~~~~~~~~s----------~~~~g~~~~---~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~ 147 (708)
+.+++..... ...|++..+ ..+|+.+.+|+||+|||||||||++||+|.++... +.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~~~-------~~---- 172 (471)
T 3t41_A 104 CSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFST-------DS---- 172 (471)
T ss_dssp CSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTBCT-------TC----
T ss_pred ceeccccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCccc-------CC----
Confidence 8877654322 123555442 36899999999999999999999999999864211 10
Q ss_pred CCCceeEeeeecccCCCCC--CCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCC
Q 039265 148 TCNNKLIGARTFNIEGNVK--GTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDC 225 (708)
Q Consensus 148 ~~~~kv~g~~~~~~~~~~~--~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~ 225 (708)
..++....|....... ....+.|..||||||||||+|+.. +.||||+|+|+.+|++++. .+
T Consensus 173 ---~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~kv~~~~--~~ 235 (471)
T 3t41_A 173 ---KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMYRVFGSK--KT 235 (471)
T ss_dssp ---EECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEEECCSSS--CC
T ss_pred ---cccccCCCccCCCcccCCCCCCCcCCCCccchhhheeecCCc------------eeEECCCCeEEEEEeccCC--CC
Confidence 0111111122111100 033567899999999999997631 4899999999999999876 68
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEccCCCCC-------------CCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC-----
Q 039265 226 TESDLLAGLDAAIEDGVDVLSISIGGGSV-------------PFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS----- 287 (708)
Q Consensus 226 ~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-------------~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~----- 287 (708)
...++++||+||++++++|||||||.... ....+.+..++..+.++|++||+||||+|....
T Consensus 236 ~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~ 315 (471)
T 3t41_A 236 ELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKL 315 (471)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHH
T ss_pred cHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCccccc
Confidence 89999999999999999999999997310 012356778888899999999999999998654
Q ss_pred -------------cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCC
Q 039265 288 -------------TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGN 354 (708)
Q Consensus 288 -------------~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 354 (708)
.+|+..+++|+|||++.
T Consensus 316 ~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~-------------------------------------------------- 345 (471)
T 3t41_A 316 KLQREYQGNGEVKDVPASMDNVVTVGSTDQ-------------------------------------------------- 345 (471)
T ss_dssp HHTTTCCSSSEEEEETTTSTTEEEEEEECT--------------------------------------------------
T ss_pred ccccccccCCceeeccccCCCeEEEEeeCC--------------------------------------------------
Confidence 26788899999998521
Q ss_pred CCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCc
Q 039265 355 GSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATP 434 (708)
Q Consensus 355 ~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~ 434 (708)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCc----------------------EEeeecCCCCCCC
Q 039265 435 MATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLS----------------------ILAAWFEPLDFNT 492 (708)
Q Consensus 435 ~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~----------------------I~sa~~~~~~~~~ 492 (708)
.+.++.||++||+. |||+|||++ |+++++.
T Consensus 346 ---------------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~------ 397 (471)
T 3t41_A 346 ---------------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN------ 397 (471)
T ss_dssp ---------------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT------
T ss_pred ---------------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC------
Confidence 12678999999964 599999987 8999876
Q ss_pred CCCcceeeccchhhhHHHHHHHHHHHHhcCC-CCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCC
Q 039265 493 NPKSIFNIMSGTSMACPHLSGIAALLKSSHP-YWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571 (708)
Q Consensus 493 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 571 (708)
+.|..++|||||||||||++|||+|++| .++|++||++|++||++... .++..||||+||+.+|
T Consensus 398 ---~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------~~~~~~G~G~vd~~~A 462 (471)
T 3t41_A 398 ---GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------KPFSRYGHGELDVYKA 462 (471)
T ss_dssp ---SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC------------CCHHHHTTCBBCHHHH
T ss_pred ---CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC------------CCcCccccChhCHHHH
Confidence 7899999999999999999999999999 89999999999999997632 3567999999999999
Q ss_pred CCCc
Q 039265 572 NDPG 575 (708)
Q Consensus 572 l~~~ 575 (708)
|+..
T Consensus 463 l~~a 466 (471)
T 3t41_A 463 LNVA 466 (471)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 9853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-58 Score=519.70 Aligned_cols=364 Identities=21% Similarity=0.219 Sum_probs=62.1
Q ss_pred ceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEeceee
Q 039265 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERKV 83 (708)
Q Consensus 4 ~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~~ 83 (708)
++|||+||+......+ +.+.++++..+.+. ....++++.|+.+|+||+++++.+++++|+++|+|++||+++.+
T Consensus 76 g~YIV~lk~~~~~~~~--~~~~~~l~a~~~~~----g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v 149 (692)
T 2p4e_P 76 GTYVVVLKEETHLSQS--ERTARRLQAQAARR----GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 149 (692)
T ss_dssp EEEEEEECTTCCHHHH--HHHHHHHHHHHHHT----TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHH--HHHHHHHHHHHhhc----ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecccc
Confidence 5999999998875544 44555555544433 34568999999999999999999999999999999999999987
Q ss_pred cccccCCCcccccccC------CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeee
Q 039265 84 RLQTTHSPSFLGLHQG------MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGAR 157 (708)
Q Consensus 84 ~~~~~~s~~~~g~~~~------~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~ 157 (708)
+... ..|++.++ ...|..+.+|+||+|||||||||++||+|.++.. |. .+
T Consensus 150 ~~~~----~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~--------------~~ 205 (692)
T 2p4e_P 150 FAQS----IPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT--------------DF 205 (692)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred ccCC----CCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec--------------cc
Confidence 6521 22555442 2368888999999999999999999999986421 10 01
Q ss_pred ecccC-CCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHH
Q 039265 158 TFNIE-GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLD 235 (708)
Q Consensus 158 ~~~~~-~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~ 235 (708)
++..+ ........+.|.+||||||||||+|+. .||||+|+|+.+|+++.. + ++.+++++||+
T Consensus 206 ~~~~d~dg~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~--G~g~~s~ii~aI~ 269 (692)
T 2p4e_P 206 ENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQ--GKGTVSGTLIGLE 269 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCCcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCC--CCCCHHHHHHHHH
Confidence 11100 000001346789999999999999873 699999999999999876 5 67889999999
Q ss_pred HHHHC------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCc-ccCCCCceEEEcccccCcce
Q 039265 236 AAIED------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST-ISNEAPWILTVGASTLDRSI 308 (708)
Q Consensus 236 ~a~~~------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~ 308 (708)
|++++ +++|||||||+... ..+..++.++.++|++||+||||+|.+... +|+..|++|+|||++.+...
T Consensus 270 ~a~~~~~~~~~g~~VINmSlGg~~s----~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~ 345 (692)
T 2p4e_P 270 FIRKSQLVQPVGPLVVLLPLAGGYS----RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhcccCCceEEEecCCCCCc----HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc
Confidence 99986 89999999997533 455566668889999999999999987644 47889999999996321100
Q ss_pred EEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcC
Q 039265 309 VATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAG 388 (708)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~g 388 (708)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCC
Q 039265 389 GAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGI 468 (708)
Q Consensus 389 a~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~ 468 (708)
...-+.||+|||
T Consensus 346 -------------------------------------------------------------a~~ss~fSn~G~------- 357 (692)
T 2p4e_P 346 -------------------------------------------------------------VTLGTLGTNFGR------- 357 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------cccccccCCCCC-------
Confidence 000123899997
Q ss_pred cCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccc
Q 039265 469 LKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERI 548 (708)
Q Consensus 469 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~ 548 (708)
||||+|||++|+++++... ..|..++|||||||||||++|||+|++|+|+|++||++|++||.+....+..+
T Consensus 358 -~vDI~APG~~I~St~~~~~-------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~~~~~~~~ 429 (692)
T 2p4e_P 358 -CVDLFAPGEDIIGASSDCS-------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWF 429 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ceeEEecCCcEEeeccCCC-------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCCCC
Confidence 4599999999999997532 57999999999999999999999999999999999999999998643222111
Q ss_pred c------ccC---CCCCCCCccCCCC--CCcCCCCC
Q 039265 549 V------DET---LRPADIFAIGAGH--VNPSRAND 573 (708)
Q Consensus 549 ~------~~~---~~~~~~~~~G~G~--vn~~~Al~ 573 (708)
. ... ..+.....+|+|+ .++..+..
T Consensus 430 p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 430 PEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp ------------------------------------
T ss_pred ccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence 0 000 1111345678888 77766654
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-56 Score=506.36 Aligned_cols=366 Identities=23% Similarity=0.280 Sum_probs=272.2
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCH----HHHHHHh--cCCCeEE
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTE----EEVQDMK--KKNGFVS 76 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~----~~i~~L~--~~~~V~~ 76 (708)
+++|||.||+... . +++++.. +.++.+++. .+++++++++. +.+++|+ ++|+|++
T Consensus 31 ~~~~IV~~k~~~~--------~----~~~~~~~------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~ 91 (671)
T 1r6v_A 31 EGKILVGYNDRSE--------V----DKIVKAV------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRY 91 (671)
T ss_dssp TTEEEEEESSHHH--------H----HHHHHHH------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEE
T ss_pred CccEEEEECCCcC--------H----HHHHHhc------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceE
Confidence 5899999997431 1 2223322 456778887 68899999864 3356676 4799999
Q ss_pred EEeceeeccccc---------------------------CCCccccccc--CCcc-cccCCCCCccEEEEEcCCCCCCCC
Q 039265 77 ARPERKVRLQTT---------------------------HSPSFLGLHQ--GMGV-WKESNFGKGVIIGILDGGINPDHP 126 (708)
Q Consensus 77 V~~~~~~~~~~~---------------------------~s~~~~g~~~--~~~~-~~~g~~G~Gv~VaVIDtGid~~Hp 126 (708)
|||+..+++... .....|++.. +..+ |+. ++|+||+|||||||||++||
T Consensus 92 vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~Hp 170 (671)
T 1r6v_A 92 VEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHP 170 (671)
T ss_dssp EECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSG
T ss_pred EecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCc
Confidence 999976543210 0112355543 3456 888 89999999999999999999
Q ss_pred CCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEe
Q 039265 127 SFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGM 206 (708)
Q Consensus 127 ~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~Gv 206 (708)
+|.++- + ..+++..+...+...+..|.+||||||||||||.. ++.+ +.||
T Consensus 171 dL~~~~-------~--------------~g~~~~~~~~~p~~~d~~d~~gHGThVAGiIAa~~--------ng~g-v~GV 220 (671)
T 1r6v_A 171 DLEGQV-------I--------------AGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKK--------DGKG-IVGV 220 (671)
T ss_dssp GGTTTB-------C--------------CEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCC--------SSSS-CCCS
T ss_pred cccccE-------E--------------ecccccCCCcCCCCCCCccCCCcchhhhhhhhccC--------CCCc-eEEE
Confidence 998641 1 11111111000001234567899999999999873 1122 3799
Q ss_pred cCCCEEEEEEeeeC----CCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCC
Q 039265 207 APYAHLAIYKVCFG----GDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281 (708)
Q Consensus 207 AP~A~l~~~kv~~~----~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN 281 (708)
||+|+|+.+|+++. ...+ .....+++||+||+++|++|||||||+.. +...+..++.+|.++|+++|+||||
T Consensus 221 AP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai~~A~~~GvlvVaAAGN 297 (671)
T 1r6v_A 221 APGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSAGN 297 (671)
T ss_dssp CTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCS
T ss_pred CCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHHHHHHhCCCEEEEeCCC
Confidence 99999999999976 1113 44567899999999999999999999753 3457788888999999999999999
Q ss_pred CCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCC
Q 039265 282 SGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGI 360 (708)
Q Consensus 282 ~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 360 (708)
+|... ..+|+..|++|+|||++.+..
T Consensus 298 ~g~~~~~~yPA~~~~VItVgA~d~~g~----------------------------------------------------- 324 (671)
T 1r6v_A 298 NTSDSHHQYPAGYPGVIQVAALDYYGG----------------------------------------------------- 324 (671)
T ss_dssp CSSSCCCCBTTTSTTCEEEEEEEEETT-----------------------------------------------------
T ss_pred CCCCCCccCcccCCCeEEEEEEcCCCC-----------------------------------------------------
Confidence 99875 667888999999999631110
Q ss_pred cccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEe
Q 039265 361 DVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIF 440 (708)
Q Consensus 361 ~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~ 440 (708)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC-C--------CCCCCcceeeccchhhhHHHH
Q 039265 441 KGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD-F--------NTNPKSIFNIMSGTSMACPHL 511 (708)
Q Consensus 441 ~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~-~--------~~~~~~~y~~~sGTSmAaP~V 511 (708)
...++.||++||.. ||+|||++|+++++.... . .....+.|..++|||||||||
T Consensus 325 ---------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~V 387 (671)
T 1r6v_A 325 ---------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHV 387 (671)
T ss_dssp ---------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHH
T ss_pred ---------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHH
Confidence 01478999999976 999999999999875320 0 011235799999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCCcccccCCC
Q 039265 512 SGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQP 582 (708)
Q Consensus 512 AG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~ 582 (708)
||+||||+|++|+|++.+||++|++||+++... ..+..||||+||+.+||+..+..+...
T Consensus 388 AGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~-----------g~d~~~G~G~vna~~Al~~~l~~~~~~ 447 (671)
T 1r6v_A 388 TGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPLPTQGGV 447 (671)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCCCSSSEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC-----------CCCCCcccceeCHHHHhhhhcCCCCCc
Confidence 999999999999999999999999999987432 345789999999999999877665443
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-55 Score=486.07 Aligned_cols=383 Identities=25% Similarity=0.352 Sum_probs=276.6
Q ss_pred ccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC
Q 039265 94 LGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 94 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
|++++ ++.+|+.+ |+||+|||||||||++||+|.++ ++..+++....+ ...+
T Consensus 6 W~l~~i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~---------------------~~~~~~~~~~~~---~~~~ 59 (441)
T 1y9z_A 6 WGQTFVGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN---------------------NVTGTNNSGTGN---WYQP 59 (441)
T ss_dssp HHHHHTTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS---------------------EEEECCCTTSCC---TTCC
T ss_pred CChhhcChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC---------------------cccCcccCCCCC---CCCC
Confidence 55544 45688865 78999999999999999999753 112222221100 2356
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCC--EEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC-CCcEEEE
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYA--HLAIYKVCFGGDVD-CTESDLLAGLDAAIED-GVDVLSI 247 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A--~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~-g~dVIn~ 247 (708)
.|..||||||||||+|... +.+ +.||||+| +|+.+|+++.. + +..+++++||+||+++ |++||||
T Consensus 60 ~d~~gHGT~vAgiia~~~~--------~~g-~~GvAP~a~~~l~~~kv~~~~--g~~~~~~~~~ai~~a~~~~g~~Vin~ 128 (441)
T 1y9z_A 60 GNNNAHGTHVAGTIAAIAN--------NEG-VVGVMPNQNANIHIVKVFNEA--GWGYSSSLVAAIDTCVNSGGANVVTM 128 (441)
T ss_dssp CSSCCHHHHHHHHHHCCCS--------SSB-CCCSSCSSCSEEEEEECEETT--EECCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCcHHHHHHHHhcccC--------CCC-ceEecCCCCCEEEEEEEeCCC--CCcCHHHHHHHHHHHHHhcCCcEEEe
Confidence 7889999999999999742 122 48999995 99999999876 6 7788999999999999 9999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceE------------------
Q 039265 248 SIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIV------------------ 309 (708)
Q Consensus 248 S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~------------------ 309 (708)
|||.... ...+..++.++.++|++||+||||+|.....+++..+++|+|||++.+....
T Consensus 129 S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i 205 (441)
T 1y9z_A 129 SLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAI 205 (441)
T ss_dssp CCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSE
T ss_pred CCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCe
Confidence 9997632 2456777888999999999999999998888999999999999987654321
Q ss_pred -EEEEcCCCc----eeeeeeccCCCCCCCC-cee--EEEecCC--C--CCCCCccCCC--CCCCCcccCcEEEeecCCCc
Q 039265 310 -ATAKLGNRE----EFDGESVFQPKDFPQT-PLP--LVYAGMN--G--KPESAFCGNG--SLSGIDVKGKVVLCERGGGI 375 (708)
Q Consensus 310 -~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~--~~~~~~~--~--~~~~~~c~~~--~~~~~~~~g~ivl~~~g~~~ 375 (708)
.....+++. .+.+.++|....++.. .++ ..+.... + ......|... .+...+++|||++|.|+ .|
T Consensus 206 ~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg-~~ 284 (441)
T 1y9z_A 206 LSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV-GN 284 (441)
T ss_dssp EEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC-SC
T ss_pred eccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEEEecc-cc
Confidence 111111111 1222232211100000 000 0111000 0 0112347543 45678899999999998 54
Q ss_pred -----chhhHHHHHHHcCCcEEEEecCCCCCc------ccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceE
Q 039265 376 -----ARIFKGEQVKNAGGAAMILMNDEPNAF------SVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTV 444 (708)
Q Consensus 376 -----~~~~k~~~~~~~ga~~~i~~~~~~~~~------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 444 (708)
.+.+|..+++++|+.++|++++..... ......+.+|.+.++..+|+.|++++.+. .
T Consensus 285 ~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~-------- 352 (441)
T 1y9z_A 285 QGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T-------- 352 (441)
T ss_dssp SSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----E--------
T ss_pred CcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----c--------
Confidence 788999999999999999998754211 11223567999999999999998876321 0
Q ss_pred eCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCC
Q 039265 445 IGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPY 524 (708)
Q Consensus 445 ~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 524 (708)
.+ ++... +.|..++|||||||||||++|||+|+||+
T Consensus 353 ---------------------------t~--------~~~~~---------~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 388 (441)
T 1y9z_A 353 ---------------------------TV--------SNQGN---------QDYEYYNGTSMATPHVSGVATLVWSYHPE 388 (441)
T ss_dssp ---------------------------EE--------EEEEE---------ESEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred ---------------------------cc--------ccccC---------CCceeecccccCCcccchHHHHHHHHCCC
Confidence 01 11222 78999999999999999999999999999
Q ss_pred CCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCCcccccCCCCCcccccccCCCC
Q 039265 525 WSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYS 595 (708)
Q Consensus 525 ~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l~~~~~~~~~~~~~~~~~~~ 595 (708)
|+|++||++||+||++++..+ .+.+||+|+||+.+|+ ||+.|+|..++.
T Consensus 389 ~sp~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 389 CSASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp SCHHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred CCHHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 999999999999999885432 3568999999999997 488899998653
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-53 Score=438.13 Aligned_cols=262 Identities=33% Similarity=0.492 Sum_probs=223.8
Q ss_pred cccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCC
Q 039265 93 FLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170 (708)
Q Consensus 93 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~ 170 (708)
.|++.. ++.+|..+++|+||+|+|||||| .+||+|+ +...++|..+ ...
T Consensus 5 ~W~l~~i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------~~~~~~~~~~-----~~~ 55 (269)
T 1gci_A 5 PWGISRVQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------IRGGASFVPG-----EPS 55 (269)
T ss_dssp CHHHHHTTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------EEEEEECSTT-----CCS
T ss_pred CcChhhcCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------ccCCcccCCC-----CCC
Confidence 355544 45689999999999999999999 8999994 2345566643 234
Q ss_pred CCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 039265 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISI 249 (708)
Q Consensus 171 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~ 249 (708)
+.|..||||||||||+|... ..+ +.||||+|+|+.+|+++.. + +..+++++||+||++++++||||||
T Consensus 56 ~~d~~gHGT~vAgiia~~~~--------~~~-~~GvAp~a~l~~~~v~~~~--g~~~~~~~~~ai~~a~~~~~~Vin~S~ 124 (269)
T 1gci_A 56 TQDGNGHGTHVAGTIAALNN--------SIG-VLGVAPSAELYAVKVLGAS--GSGSVSSIAQGLEWAGNNGMHVANLSL 124 (269)
T ss_dssp CSCSSSHHHHHHHHHHCCCS--------SSB-CCCSSTTCEEEEEECBCTT--SCBCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCChHHHHHHHhcCcC--------CCC-cEEeCCCCEEEEEEeECCC--CCcCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 67899999999999998731 112 3799999999999999876 5 6788999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 250 GGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 250 G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
|.... ...+..++.++.++|+++|+||||+|.....+|+..+++|+||+++.
T Consensus 125 G~~~~---~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------- 176 (269)
T 1gci_A 125 GSPSP---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------------------- 176 (269)
T ss_dssp CBSSC---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------------------
T ss_pred CCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-------------------------
Confidence 98632 35777888889999999999999999988888999999999999521
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~ 489 (708)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 177 ----------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~--- 205 (269)
T 1gci_A 177 ----------------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG--- 205 (269)
T ss_dssp ----------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT---
T ss_pred ----------------------------------------CCCCCCCCCCCCCc--------ceEecCCCeEeecCC---
Confidence 12678899999865 999999999999986
Q ss_pred CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcC
Q 039265 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPS 569 (708)
Q Consensus 490 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 569 (708)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. .+..||+|+||+.
T Consensus 206 ------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------------~~~~~G~G~vn~~ 265 (269)
T 1gci_A 206 ------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAE 265 (269)
T ss_dssp ------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHH
T ss_pred ------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC--------------CCCCcccCccCHH
Confidence 78999999999999999999999999999999999999999999873 3468999999999
Q ss_pred CCCC
Q 039265 570 RAND 573 (708)
Q Consensus 570 ~Al~ 573 (708)
+||+
T Consensus 266 ~A~~ 269 (269)
T 1gci_A 266 AATR 269 (269)
T ss_dssp HHTC
T ss_pred HHcC
Confidence 9985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=440.17 Aligned_cols=262 Identities=32% Similarity=0.493 Sum_probs=221.6
Q ss_pred ccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC
Q 039265 94 LGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 94 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
|+++. ++.+|..+++|+||+|+|||||||++||+|+ +...++|..+ ....
T Consensus 6 w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------~~~g~~~~~~-----~~~~ 57 (274)
T 1r0r_E 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------VVGGASFVAG-----EAYN 57 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------EEEEEECSTT-----CCTT
T ss_pred CchhhcCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------CCCCccccCC-----CCCC
Confidence 55544 4568999999999999999999999999994 2334556543 2345
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.|..||||||||||+|... ..+ +.||||+|+|+.+|+++.. + +..+++++||+||++++++|||||||
T Consensus 58 ~d~~gHGT~vAgiia~~~~--------~~g-~~GvAp~a~l~~~~v~~~~--g~~~~~~i~~ai~~a~~~~~~Vin~S~G 126 (274)
T 1r0r_E 58 TDGNGHGTHVAGTVAALDN--------TTG-VLGVAPSVSLYAVKVLNSS--GSGSYSGIVSGIEWATTNGMDVINMSLG 126 (274)
T ss_dssp CCSSSHHHHHHHHHHCCSS--------SSB-CCCSSTTSEEEEEECSCTT--SEECHHHHHHHHHHHHHTTCSEEEECEE
T ss_pred CCCCCCHHHHHHHHHccCC--------CCc-eEEECCCCEEEEEEEECCC--CCccHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 7889999999999998631 112 3799999999999999876 5 67889999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCC----CCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 251 GGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPF----NSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~----~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
.... ...+..++.++.++|+++|+||||+|.. ...+|+..+++|+||+.+.
T Consensus 127 ~~~~---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 181 (274)
T 1r0r_E 127 GASG---STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS---------------------- 181 (274)
T ss_dssp BSSC---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT----------------------
T ss_pred CCCC---cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC----------------------
Confidence 8632 4577888889999999999999999976 3456788899999998521
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecC
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFE 486 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~ 486 (708)
.+.++.||++||. |||+|||.+|+++++.
T Consensus 182 -------------------------------------------~~~~~~~S~~G~~--------~di~APG~~i~s~~~~ 210 (274)
T 1r0r_E 182 -------------------------------------------NSNRASFSSVGAE--------LEVMAPGAGVYSTYPT 210 (274)
T ss_dssp -------------------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEEETT
T ss_pred -------------------------------------------CCCcCccCCCCCC--------ceEEeCCCCeEeecCC
Confidence 1267889999985 4999999999999986
Q ss_pred CCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCC
Q 039265 487 PLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHV 566 (708)
Q Consensus 487 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~v 566 (708)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++. ++..||+|+|
T Consensus 211 ---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~~ 267 (274)
T 1r0r_E 211 ---------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLI 267 (274)
T ss_dssp ---------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBC
T ss_pred ---------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC--------------CCCCcccCcc
Confidence 78999999999999999999999999999999999999999999862 3468999999
Q ss_pred CcCCCCC
Q 039265 567 NPSRAND 573 (708)
Q Consensus 567 n~~~Al~ 573 (708)
|+.+|++
T Consensus 268 ~~~~A~~ 274 (274)
T 1r0r_E 268 NVEAAAQ 274 (274)
T ss_dssp CHHHHTC
T ss_pred CHHHHhC
Confidence 9999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-53 Score=437.34 Aligned_cols=265 Identities=29% Similarity=0.415 Sum_probs=217.2
Q ss_pred cccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCC
Q 039265 93 FLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170 (708)
Q Consensus 93 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~ 170 (708)
+|++.. +..+|+.+..|+||+|||||||||++||+|.++ ++..++|... ...
T Consensus 12 ~w~l~~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------~~~~~~~~~~-----~~~ 65 (280)
T 1dbi_A 12 QYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------VIKGYDFVDN-----DYD 65 (280)
T ss_dssp CCTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------EEEEEETTTT-----BSC
T ss_pred CCChhhcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------cccceeccCC-----CCC
Confidence 455554 356999987788999999999999999999753 4556677654 345
Q ss_pred CCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 039265 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISI 249 (708)
Q Consensus 171 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~ 249 (708)
+.|..+|||||||||+|...+. .+ +.||||+|+|+.+|+++.. + +..+++++||+||+++|++||||||
T Consensus 66 ~~d~~gHGT~vAgiia~~~~~~-------~g-~~GvAp~a~l~~~kv~~~~--g~~~~~~i~~ai~~a~~~g~~Vin~S~ 135 (280)
T 1dbi_A 66 PMDLNNHGTHVAGIAAAETNNA-------TG-IAGMAPNTRILAVRALDRN--GSGTLSDIADAIIYAADSGAEVINLSL 135 (280)
T ss_dssp CCCSSSHHHHHHHHHHCCCSSS-------SS-CCCSSSSCEEEEEECCCTT--SCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCcHHHHHHHHhCcCCCC-------Cc-ceEeCCCCEEEEEEEECCC--CCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 6789999999999999975322 12 3799999999999999876 5 7788999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 250 GGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 250 G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
|... ....+..++.++.++|+++|+||||+|.....+++..+++|+|||++.
T Consensus 136 G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------- 187 (280)
T 1dbi_A 136 GCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------------------- 187 (280)
T ss_dssp SSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------------------
T ss_pred CCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-------------------------
Confidence 9863 245777888899999999999999999888888899999999999521
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~ 489 (708)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 188 ----------------------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~--- 216 (280)
T 1dbi_A 188 ----------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITG--- 216 (280)
T ss_dssp ----------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETT---
T ss_pred ----------------------------------------CCCcCCCCCCCCCc--------eEEEecCCeEeecCC---
Confidence 12678899999865 999999999999976
Q ss_pred CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcC
Q 039265 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPS 569 (708)
Q Consensus 490 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 569 (708)
+.|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||+|+||+.
T Consensus 217 ------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------------~~~~~G~G~vn~~ 275 (280)
T 1dbi_A 217 ------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSY 275 (280)
T ss_dssp ------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHH
T ss_pred ------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC-------------CCCcccCCEECHH
Confidence 7899999999999999999999987 899999999999999998742 2257999999999
Q ss_pred CCCC
Q 039265 570 RAND 573 (708)
Q Consensus 570 ~Al~ 573 (708)
+||+
T Consensus 276 ~A~~ 279 (280)
T 1dbi_A 276 NAVT 279 (280)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9986
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-53 Score=436.94 Aligned_cols=265 Identities=34% Similarity=0.517 Sum_probs=222.5
Q ss_pred cccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCC
Q 039265 93 FLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170 (708)
Q Consensus 93 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~ 170 (708)
.|+++. +..+|..+++|+||+|||||||||++||+|+ +...++|..+. ..+
T Consensus 5 ~w~l~~i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------~~~g~~~~~~~----~~~ 57 (281)
T 1to2_E 5 PYGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK-----------------------VAGGASMVPSE----TNP 57 (281)
T ss_dssp CHHHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------EEEEEECCTTC----CCT
T ss_pred CcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHc-----------------------CcCCccccCCC----CCC
Confidence 356554 3568999999999999999999999999995 22344555321 122
Q ss_pred CCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 039265 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISI 249 (708)
Q Consensus 171 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~ 249 (708)
..|..||||||||||+|... ..+ +.||||+|+|+.+|+++.. + +..++++++|+|+++++++||||||
T Consensus 58 ~~d~~gHGT~vAgiia~~~~--------~~g-~~GvAp~a~l~~~kv~~~~--g~~~~~~i~~ai~~a~~~~~~Vin~S~ 126 (281)
T 1to2_E 58 FQDNNSHGTHVAGTVAALNN--------SIG-VLGVAPSASLYAVKVLGAD--GSGQYSWIINGIEWAIANNMDVINMSL 126 (281)
T ss_dssp TCCSSSHHHHHHHHHHCCSS--------SSS-BCCSSTTSEEEEEECSCTT--SEECHHHHHHHHHHHHHTTCSEEEECE
T ss_pred CCCCCCcHHHHHHHHhccCC--------CCc-ceeeCCCCEEEEEEEeCCC--CCccHHHHHHHHHHHHHCCCcEEEECC
Confidence 46889999999999998731 112 3799999999999999876 5 6788999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCC----CCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeec
Q 039265 250 GGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPF----NSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESV 325 (708)
Q Consensus 250 G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~----~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 325 (708)
|... ....+..++.++.++|+++|+||||+|.. ...+|+..|++|+|||.+.
T Consensus 127 G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------------------- 182 (281)
T 1to2_E 127 GGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------------------- 182 (281)
T ss_dssp EBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------------------
T ss_pred cCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC---------------------
Confidence 9863 24577888889999999999999999976 3456788899999998521
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc
Q 039265 326 FQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI 405 (708)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~ 405 (708)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeec
Q 039265 406 ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWF 485 (708)
Q Consensus 406 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~ 485 (708)
.+.++.||++||.. ||+|||.+|+++++
T Consensus 183 --------------------------------------------~~~~~~fS~~G~~~--------di~APG~~i~s~~~ 210 (281)
T 1to2_E 183 --------------------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTLP 210 (281)
T ss_dssp --------------------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEET
T ss_pred --------------------------------------------CCCcCCcCCCCCCc--------eEEecCCCeEeecC
Confidence 12678899999864 99999999999998
Q ss_pred CCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCC
Q 039265 486 EPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565 (708)
Q Consensus 486 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~ 565 (708)
. +.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..||||+
T Consensus 211 ~---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------------~~~~~G~G~ 267 (281)
T 1to2_E 211 G---------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGL 267 (281)
T ss_dssp T---------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCB
T ss_pred C---------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC--------------CCCCcccce
Confidence 6 78999999999999999999999999999999999999999999873 346899999
Q ss_pred CCcCCCCCC
Q 039265 566 VNPSRANDP 574 (708)
Q Consensus 566 vn~~~Al~~ 574 (708)
||+.+|+++
T Consensus 268 v~~~~a~~~ 276 (281)
T 1to2_E 268 INVQAAAQH 276 (281)
T ss_dssp CCHHHHTSS
T ss_pred ecHHHHhhh
Confidence 999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-52 Score=432.36 Aligned_cols=264 Identities=31% Similarity=0.444 Sum_probs=223.7
Q ss_pred cccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCC
Q 039265 93 FLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170 (708)
Q Consensus 93 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~ 170 (708)
+|+++. +..+|+.. +|+||+|||||||||++||+|.++ +...++|..+ ...
T Consensus 12 ~w~l~~i~~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------~~~~~~~~~~-----~~~ 64 (279)
T 1thm_A 12 QYGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------VVGGWDFVDN-----DST 64 (279)
T ss_dssp CCHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------EEEEEETTTT-----BSC
T ss_pred ccChhhCChHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC---------------------ccccccccCC-----CCC
Confidence 355543 45689887 799999999999999999999753 5556677654 345
Q ss_pred CCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEcc
Q 039265 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISI 249 (708)
Q Consensus 171 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~ 249 (708)
+.|..||||||||||+|...+. .+ +.||||+|+|+.+|+++.. + +...++++||+||+++|++||||||
T Consensus 65 ~~d~~gHGT~vAgiia~~~~n~-------~g-~~GvAp~a~l~~~~v~~~~--g~~~~~~~~~ai~~a~~~g~~Vin~S~ 134 (279)
T 1thm_A 65 PQNGNGHGTHCAGIAAAVTNNS-------TG-IAGTAPKASILAVRVLDNS--GSGTWTAVANGITYAADQGAKVISLSL 134 (279)
T ss_dssp CCCSSSHHHHHHHHHHCCCSSS-------SS-CCCSSTTCEEEEEECSCTT--SCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCcHHHHHHHHhCccCCC-------Cc-cEEeCCCCEEEEEEeeCCC--CCccHHHHHHHHHHHHHCCCCEEEEec
Confidence 6789999999999999975322 12 3799999999999999876 5 6788999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 250 GGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 250 G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
|... ....+..++.++.++|+++|+||||+|.....+++..+++|+||+++.
T Consensus 135 G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------- 186 (279)
T 1thm_A 135 GGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------------------- 186 (279)
T ss_dssp CBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------------------
T ss_pred CCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-------------------------
Confidence 9863 245777888899999999999999999988888999999999998521
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~ 489 (708)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 187 ----------------------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~--- 215 (279)
T 1thm_A 187 ----------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT--- 215 (279)
T ss_dssp ----------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT---
T ss_pred ----------------------------------------CCCcCCcCCCCCce--------EEEEcCCCeEEEeCC---
Confidence 12678899999865 999999999999986
Q ss_pred CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcC
Q 039265 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPS 569 (708)
Q Consensus 490 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 569 (708)
+.|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||+|+||+.
T Consensus 216 ------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-------------~~~~G~G~vn~~ 274 (279)
T 1thm_A 216 ------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-------------GTYWAKGRVNAY 274 (279)
T ss_dssp ------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-------------TTTBSSEECCHH
T ss_pred ------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-------------CccccCCeeCHH
Confidence 78999999999999999999999 479999999999999999987532 147899999999
Q ss_pred CCCC
Q 039265 570 RAND 573 (708)
Q Consensus 570 ~Al~ 573 (708)
+||+
T Consensus 275 ~A~~ 278 (279)
T 1thm_A 275 KAVQ 278 (279)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=444.80 Aligned_cols=272 Identities=28% Similarity=0.442 Sum_probs=221.4
Q ss_pred ccccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCC
Q 039265 92 SFLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTE 169 (708)
Q Consensus 92 ~~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~ 169 (708)
..|+++. ++.+|+.+++|+||+|||||||||++||+|.++ +...++|..+++.. ..
T Consensus 21 ~~w~l~~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~---------------------~~~~~~~~~~~~~~-~~ 78 (327)
T 2x8j_A 21 VPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAER---------------------IIGGVNLTTDYGGD-ET 78 (327)
T ss_dssp CCHHHHHTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG---------------------EEEEEECSSGGGGC-TT
T ss_pred cCcchhhcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc---------------------ccCCccccCCCCCC-CC
Confidence 3466654 456999999999999999999999999999743 55556666432111 22
Q ss_pred CCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHH------CCC
Q 039265 170 PPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIE------DGV 242 (708)
Q Consensus 170 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~------~g~ 242 (708)
...|..||||||||||+|... +.+ +.||||+|+|+.+|+++.. + +..+++++||+||++ .++
T Consensus 79 ~~~d~~gHGT~VAgiia~~~~--------~~g-~~GvAp~a~l~~~kv~~~~--g~~~~~~i~~ai~~a~~~~~~~~~~~ 147 (327)
T 2x8j_A 79 NFSDNNGHGTHVAGTVAAAET--------GSG-VVGVAPKADLFIIKALSGD--GSGEMGWIAKAIRYAVDWRGPKGEQM 147 (327)
T ss_dssp CCCCSSSHHHHHHHHHHCCCC--------SSB-CCCSSTTCEEEEEECSCTT--SEECHHHHHHHHHHHHHCCCTTSCCC
T ss_pred CCCCCCCchHHHHHHHhccCC--------CCC-cEeeCCCCEEEEEEeECCC--CCcCHHHHHHHHHHHHhhcccccCCc
Confidence 457899999999999998731 122 3899999999999999876 5 678899999999999 899
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCC-----CCcccCCCCceEEEcccccCcceEEEEEcCCC
Q 039265 243 DVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPF-----NSTISNEAPWILTVGASTLDRSIVATAKLGNR 317 (708)
Q Consensus 243 dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~-----~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~ 317 (708)
+|||||||... ....+..++.++.++|++||+||||+|.. ...+|+..+++|+|||++.
T Consensus 148 ~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~------------- 211 (327)
T 2x8j_A 148 RIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF------------- 211 (327)
T ss_dssp SEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT-------------
T ss_pred eEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC-------------
Confidence 99999999863 24567788888999999999999999975 2456788899999999521
Q ss_pred ceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecC
Q 039265 318 EEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMND 397 (708)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~ 397 (708)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCC
Q 039265 398 EPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPG 477 (708)
Q Consensus 398 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG 477 (708)
.+.++.||++||. |||+|||
T Consensus 212 ----------------------------------------------------~~~~~~fS~~G~~--------~di~APG 231 (327)
T 2x8j_A 212 ----------------------------------------------------DLRLSDFTNTNEE--------IDIVAPG 231 (327)
T ss_dssp ----------------------------------------------------TCCBSCC---CCC--------CSEEEEC
T ss_pred ----------------------------------------------------CCCCCCccCCCCC--------ceEecCc
Confidence 1267899999985 4999999
Q ss_pred CcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHccccccccCCccccccC
Q 039265 478 LSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS-----HPYWSPAAIKSALMTTADLLNMNGERIVDET 552 (708)
Q Consensus 478 ~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~ 552 (708)
++|+++++. +.|..++|||||||+|||++|||+|+ +|.+++.+||++|++||+++.
T Consensus 232 ~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g---------- 292 (327)
T 2x8j_A 232 VGIKSTYLD---------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG---------- 292 (327)
T ss_dssp SSEEEECST---------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCS----------
T ss_pred CceEeecCC---------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCC----------
Confidence 999999876 78999999999999999999999999 999999999999999999863
Q ss_pred CCCCCCCccCCCCCCcCCCCCC
Q 039265 553 LRPADIFAIGAGHVNPSRANDP 574 (708)
Q Consensus 553 ~~~~~~~~~G~G~vn~~~Al~~ 574 (708)
.++..||+|+||+.+|++.
T Consensus 293 ---~~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 293 ---FTAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp ---SCHHHHTTCEECTTHHHHH
T ss_pred ---CCCCceeeeEECHHHHHHh
Confidence 2457999999999999973
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=459.44 Aligned_cols=297 Identities=21% Similarity=0.212 Sum_probs=197.6
Q ss_pred CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCC-----Ccee----EeeeecccC-CC-CCCC
Q 039265 100 MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTC-----NNKL----IGARTFNIE-GN-VKGT 168 (708)
Q Consensus 100 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~-----~~kv----~g~~~~~~~-~~-~~~~ 168 (708)
.++|+++..|+||+|||||||||++||+|.+....+....|+..++.... +..+ ...+.+... .. .++.
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPDT 100 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHCTTT
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccccCCC
Confidence 45999999999999999999999999999987776677778766553200 0000 000000000 00 0002
Q ss_pred CCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCC---CC-CCHHHHHHHHHHHHHCCCcE
Q 039265 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGD---VD-CTESDLLAGLDAAIEDGVDV 244 (708)
Q Consensus 169 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~---~g-~~~~~i~~ai~~a~~~g~dV 244 (708)
.++.|.+||||||||||||+... .+.||||+|+|+.+|++.... .+ ....+++++|+||+++|++|
T Consensus 101 ~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~V 170 (357)
T 4h6x_A 101 KDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANI 170 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSE
T ss_pred CCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCE
Confidence 23456789999999999987421 247999999999999975431 01 34567889999999999999
Q ss_pred EEEccCCCC-CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeee
Q 039265 245 LSISIGGGS-VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGE 323 (708)
Q Consensus 245 In~S~G~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 323 (708)
||||||... .....+.+..++.++.++|+++|+||||+|.....+|+..|++|+|||++.
T Consensus 171 in~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------- 231 (357)
T 4h6x_A 171 IHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV------------------- 231 (357)
T ss_dssp EEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT-------------------
T ss_pred EeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc-------------------
Confidence 999999764 234557788888899999999999999999988889999999999999521
Q ss_pred eccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc
Q 039265 324 SVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS 403 (708)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~ 403 (708)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEee
Q 039265 404 VIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAA 483 (708)
Q Consensus 404 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa 483 (708)
.+.++.||+||+. ..||||+|||.+|+++
T Consensus 232 ----------------------------------------------~~~~~~fSn~G~~-----~~~~di~APG~~i~s~ 260 (357)
T 4h6x_A 232 ----------------------------------------------DGTPCHFSNWGGN-----NTKEGILAPGEEILGA 260 (357)
T ss_dssp ----------------------------------------------TSSBCTTCC---C-----TTTTEEEEECSSEEEC
T ss_pred ----------------------------------------------CCcccccccCCCC-----CCccceeecCCCeEec
Confidence 2367899999975 4689999999999999
Q ss_pred ecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCC
Q 039265 484 WFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKS----SHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIF 559 (708)
Q Consensus 484 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~ 559 (708)
++.. +.|..++|||||||||||++|||++ ++|.|+++|||++|++||++++... ...+.
T Consensus 261 ~~~~--------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~---------~~~~~ 323 (357)
T 4h6x_A 261 QPCT--------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV---------VEEPE 323 (357)
T ss_dssp CTTC--------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------------
T ss_pred cCCC--------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCcc
Confidence 8762 5677899999999999999999995 4678999999999999999875321 23457
Q ss_pred ccCCCCCCcCCCCC
Q 039265 560 AIGAGHVNPSRAND 573 (708)
Q Consensus 560 ~~G~G~vn~~~Al~ 573 (708)
+||+|+||+.+|++
T Consensus 324 ~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 324 RCLRGFVNIPGAMK 337 (357)
T ss_dssp -CTTCBCCHHHHHH
T ss_pred cceeEEecHHHHHH
Confidence 89999999999997
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-51 Score=432.11 Aligned_cols=287 Identities=29% Similarity=0.407 Sum_probs=229.4
Q ss_pred cccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCC
Q 039265 93 FLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170 (708)
Q Consensus 93 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~ 170 (708)
.|+++. +..+|..+++|+||+|||||||||++||+|.++ +...++|....... ...
T Consensus 7 ~W~l~~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------~~~~~~~~~~~~~~-~~~ 64 (310)
T 2ixt_A 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------VEQCKDFTGATTPI-NNS 64 (310)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------EEEEEESSSSSSCE-ETC
T ss_pred CCchhhcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------ccccccccCCCCCC-CCC
Confidence 355544 577999999999999999999999999999753 44456666431100 234
Q ss_pred CCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCC-----cE
Q 039265 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGV-----DV 244 (708)
Q Consensus 171 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~-----dV 244 (708)
..|..||||||||||+|.... +...+.||||+|+|+.+|++.+. + +..+++++||+||+++++ +|
T Consensus 65 ~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~--g~~~~~~~~~ai~~a~~~~~~~~~~~V 135 (310)
T 2ixt_A 65 CTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS--GSGYSDDIAAAIRHAADQATATGTKTI 135 (310)
T ss_dssp CCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT--SCCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCC--CCCcHHHHHHHHHHHHHhhhccCCCeE
Confidence 578899999999999987421 11224899999999999999876 5 678899999999999988 99
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCC--CCcccCCCCceEEEcccccCcceEEEEEcCCCceeee
Q 039265 245 LSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPF--NSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDG 322 (708)
Q Consensus 245 In~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~--~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~ 322 (708)
||||||... ....+..++.++.++|++||+||||+|.. ...+|+..+++|+|||.+...
T Consensus 136 in~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~---------------- 196 (310)
T 2ixt_A 136 ISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ---------------- 196 (310)
T ss_dssp EEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE----------------
T ss_pred EEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc----------------
Confidence 999999863 24567788888999999999999999976 456788889999999953100
Q ss_pred eeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc
Q 039265 323 ESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF 402 (708)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~ 402 (708)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCC--ccccccCCCCCCCC----CCCcCCceeeC
Q 039265 403 SVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAP--TVVSFSSRGPNLAS----PGILKPDIIGP 476 (708)
Q Consensus 403 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~----~g~~KPDI~AP 476 (708)
..+ .++.||++||.... .++.||||+||
T Consensus 197 ----------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~Ap 230 (310)
T 2ixt_A 197 ----------------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAP 230 (310)
T ss_dssp ----------------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEE
T ss_pred ----------------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECC
Confidence 011 57789999985421 12459999999
Q ss_pred CCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCC
Q 039265 477 GLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPA 556 (708)
Q Consensus 477 G~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~ 556 (708)
|.+|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+. ....+.
T Consensus 231 G~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~----~~a~~g 297 (310)
T 2ixt_A 231 GSSVYSTWYN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG----YGAAIG 297 (310)
T ss_dssp CSSEEEECTT---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS----TTCCSS
T ss_pred CCCEeeecCC---------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC----cccccC
Confidence 9999999876 789999999999999999999999999999999999999999998764321 112456
Q ss_pred CCCccCCCCCCc
Q 039265 557 DIFAIGAGHVNP 568 (708)
Q Consensus 557 ~~~~~G~G~vn~ 568 (708)
.+..+|||++|+
T Consensus 298 ~d~~~G~G~~~v 309 (310)
T 2ixt_A 298 DDYASGFGFARV 309 (310)
T ss_dssp SBTTTBTCBCCC
T ss_pred Cccccccceeec
Confidence 778999999996
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-52 Score=432.76 Aligned_cols=266 Identities=26% Similarity=0.302 Sum_probs=212.9
Q ss_pred CCCC-CccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHH
Q 039265 106 SNFG-KGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGT 184 (708)
Q Consensus 106 g~~G-~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGi 184 (708)
.++| +||+|||||||||++||+|.++ .+..+++..... .....|.+|||||||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~---------------------~~~~~~~~~~~~---~~~d~~~~gHGT~VAGi 58 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA---------------------DLTVLPTLAPTA---ARSDGFMSAHGTHVASI 58 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC---------------------EEEECCCSSCCC---CCTTCHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC---------------------eeecCcCCCCCC---CCCCCCCCCcccceeeh
Confidence 3678 6999999999999999999854 111222222110 12233457899999999
Q ss_pred hhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCC-CCCCCCHHHH
Q 039265 185 AAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGS-VPFFNDSIAV 263 (708)
Q Consensus 185 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~-~~~~~~~~~~ 263 (708)
|+|+... .+.||||+|+|+.+|++.+........++++||+||++++++|||||||... .......+..
T Consensus 59 iag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~ 128 (282)
T 3zxy_A 59 IFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLEN 128 (282)
T ss_dssp HHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHH
T ss_pred hhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHH
Confidence 9987421 2479999999999999876522367888999999999999999999999753 2234456778
Q ss_pred HHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecC
Q 039265 264 GSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGM 343 (708)
Q Consensus 264 a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (708)
++.++.++|+++|+||||+|.....+++..+++|+|||.+.
T Consensus 129 ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------------------- 169 (282)
T 3zxy_A 129 AVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD--------------------------------------- 169 (282)
T ss_dssp HHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT---------------------------------------
T ss_pred HHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC---------------------------------------
Confidence 88889999999999999999998888999999999998521
Q ss_pred CCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHH
Q 039265 344 NGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLK 423 (708)
Q Consensus 344 ~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~ 423 (708)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccc
Q 039265 424 IKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSG 503 (708)
Q Consensus 424 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sG 503 (708)
.+.++.||+||+. ..||||+|||.+|+++++. +.|..++|
T Consensus 170 --------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~---------~~~~~~sG 209 (282)
T 3zxy_A 170 --------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAKPG---------GGTERLSG 209 (282)
T ss_dssp --------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT---------SCEEEECS
T ss_pred --------------------------CCccccccCCCCC-----ccccceeccCcceeeecCC---------CceeecCC
Confidence 2267889999875 4689999999999999987 78999999
Q ss_pred hhhhHHHHHHHHHHHHhcC----CCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 504 TSMACPHLSGIAALLKSSH----PYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 504 TSmAaP~VAG~aALl~q~~----p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
||||||||||++|||++++ |.++|++||++|++||++++.. .+.....||+|+||+.+||+
T Consensus 210 TS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~---------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 210 TAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD---------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------------CGGGTTCBCCHHHHHH
T ss_pred CcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC---------CCCccCceeeeEeCHHHHHH
Confidence 9999999999999999874 7899999999999999987532 23455789999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-52 Score=438.24 Aligned_cols=271 Identities=28% Similarity=0.407 Sum_probs=224.2
Q ss_pred cccccc--CCcccccCCCCC--ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCC
Q 039265 93 FLGLHQ--GMGVWKESNFGK--GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168 (708)
Q Consensus 93 ~~g~~~--~~~~~~~g~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~ 168 (708)
.|+++. ++.+|+.+ +|+ ||+|||||||||++||+|.++ +...++|..+......
T Consensus 9 ~W~l~~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------~~~~~~~~~~~~~~~~ 66 (320)
T 2z30_A 9 PWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------IAWCVSTLRGKVSTKL 66 (320)
T ss_dssp CHHHHHTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------EEEEEECGGGCCBCCH
T ss_pred CCChhhcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------cccCccccCCccCCCC
Confidence 466554 56799998 999 999999999999999999753 4445555543210001
Q ss_pred CCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC-------
Q 039265 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED------- 240 (708)
Q Consensus 169 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~------- 240 (708)
.+..|..||||||||||+|... ..+ +.||||+|+|+.+|+++.. + +..+++++||+||+++
T Consensus 67 ~~~~d~~gHGT~vAgiia~~~n--------~~g-~~GvAp~a~l~~~~v~~~~--g~~~~~~i~~ai~~a~~~~~~~~~~ 135 (320)
T 2z30_A 67 RDCADQNGHGTHVIGTIAALNN--------DIG-VVGVAPGVQIYSVRVLDAR--GSGSYSDIAIGIEQAILGPDGVADK 135 (320)
T ss_dssp HHHBCSSSHHHHHHHHHHCCSS--------SBS-CCCSSTTCEEEEEECSCTT--SEEEHHHHHHHHHHHHHTTTTCSCT
T ss_pred CCCCCCCCCHHHHHHHHHcccC--------CCc-eEeeCCCCEEEEEEeeCCC--CCccHHHHHHHHHHHHhCccccccc
Confidence 1236789999999999998621 112 3799999999999999876 5 6788999999999987
Q ss_pred -------------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcc
Q 039265 241 -------------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRS 307 (708)
Q Consensus 241 -------------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~ 307 (708)
+++|||||||... ....+..++.++.++|++||+||||+|.....+++..|++|+|||++.
T Consensus 136 ~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~--- 209 (320)
T 2z30_A 136 DGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS--- 209 (320)
T ss_dssp TSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---
T ss_pred ccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCC---
Confidence 9999999999864 245677788889999999999999999988888999999999999521
Q ss_pred eEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHc
Q 039265 308 IVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNA 387 (708)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ 387 (708)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCC
Q 039265 388 GGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPG 467 (708)
Q Consensus 388 ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g 467 (708)
.+.++.||++||
T Consensus 210 --------------------------------------------------------------~~~~~~~S~~g~------ 221 (320)
T 2z30_A 210 --------------------------------------------------------------NDNIASFSNRQP------ 221 (320)
T ss_dssp --------------------------------------------------------------TSCBCTTSCSSC------
T ss_pred --------------------------------------------------------------CCCcCcccCCCC------
Confidence 126788999996
Q ss_pred CcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcC-------------CCCCHHHHHHHH
Q 039265 468 ILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSH-------------PYWSPAAIKSAL 534 (708)
Q Consensus 468 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------------p~~s~~~vk~~L 534 (708)
+|+|||.+|+++++. +.|..++|||||||||||++|||+|++ |.|++.+||++|
T Consensus 222 ----~v~APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L 288 (320)
T 2z30_A 222 ----EVSAPGVDILSTYPD---------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGIL 288 (320)
T ss_dssp ----SEEEECSSEEEEETT---------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHH
T ss_pred ----CEEeCCCCeEEeccC---------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHH
Confidence 789999999999986 789999999999999999999999998 999999999999
Q ss_pred HccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCC
Q 039265 535 MTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDP 574 (708)
Q Consensus 535 ~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 574 (708)
++||+++.. +..+..||+|+||+.+||+.
T Consensus 289 ~~ta~~~~~-----------~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 289 HITADDLGP-----------TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHHSBCCSS-----------SSSBTTTBTCBCCHHHHHHH
T ss_pred HhhCccCCC-----------CCCCCCcCCceeCHHHHHHH
Confidence 999998743 23457899999999999864
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-51 Score=440.01 Aligned_cols=279 Identities=20% Similarity=0.153 Sum_probs=224.6
Q ss_pred ccccccc--CCcccccCCCCC--ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC
Q 039265 92 SFLGLHQ--GMGVWKESNFGK--GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG 167 (708)
Q Consensus 92 ~~~g~~~--~~~~~~~g~~G~--Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~ 167 (708)
..|++.. +..+|+. .+|+ ||+||||||||| +||+|.++ +...++|....+...
T Consensus 23 ~~W~l~~i~~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------~~~~~~~~~~~~~~~ 79 (347)
T 2iy9_A 23 KPWYFDAIGLTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------EFAKFSFTQDGSPFP 79 (347)
T ss_dssp CCHHHHHHTCCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------EEEEEECBTTCCSSC
T ss_pred cCcchhhCChHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------cccCCcccCCCCCCC
Confidence 3455543 5679998 8999 999999999999 99999753 444566664321111
Q ss_pred CCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHC------C
Q 039265 168 TEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIED------G 241 (708)
Q Consensus 168 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~------g 241 (708)
...+.|..||||||||||+|.. | +.||||+|+|+.+|+++.. +.. ++++||+||+++ +
T Consensus 80 ~~~~~d~~gHGT~vAgiia~~~-------g-----~~GvAp~a~l~~~~v~~~~--~~~--~~~~ai~~a~~~~~~~~~~ 143 (347)
T 2iy9_A 80 VKKSEALYIHGTAMASLIASRY-------G-----IYGVYPHALISSRRVIPDG--VQD--SWIRAIESIMSNVFLAPGE 143 (347)
T ss_dssp CSSSHHHHHHHHHHHHHHHCSS-------S-----SCCSSTTCEEEEEECCSSB--CTT--HHHHHHHHHHTCTTSCTTE
T ss_pred CCCCCCCCCcHHHHHHHHhccc-------C-----CcccCCCCEEEEEEEecCC--CHH--HHHHHHHHHHhhhhcccCC
Confidence 2245678899999999999871 2 2799999999999999765 333 999999999999 9
Q ss_pred CcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCC-------CCcccCCCC----------ceEEEccccc
Q 039265 242 VDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPF-------NSTISNEAP----------WILTVGASTL 304 (708)
Q Consensus 242 ~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~-------~~~~~~~~p----------~vitVga~~~ 304 (708)
++|||||||..........+..++.++.++|++||+||||+|.. ...+++..+ ++|+|||++.
T Consensus 144 ~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~ 223 (347)
T 2iy9_A 144 EKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQ 223 (347)
T ss_dssp EEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECC
T ss_pred ceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEccc
Confidence 99999999976444456778888889999999999999999975 456778888 9999999632
Q ss_pred --CcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHH
Q 039265 305 --DRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGE 382 (708)
Q Consensus 305 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~ 382 (708)
+...
T Consensus 224 ~~~g~~-------------------------------------------------------------------------- 229 (347)
T 2iy9_A 224 YRKGET-------------------------------------------------------------------------- 229 (347)
T ss_dssp CCTTSC--------------------------------------------------------------------------
T ss_pred CCCCce--------------------------------------------------------------------------
Confidence 1000
Q ss_pred HHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCC
Q 039265 383 QVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPN 462 (708)
Q Consensus 383 ~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 462 (708)
....+.++.||++||+
T Consensus 230 ----------------------------------------------------------------~~~~~~~~~fS~~G~~ 245 (347)
T 2iy9_A 230 ----------------------------------------------------------------PVLHGGGITGSRFGNN 245 (347)
T ss_dssp ----------------------------------------------------------------CCBCCCSSSCBCBCTT
T ss_pred ----------------------------------------------------------------ecccCCCCCCCCCCCC
Confidence 0001256799999985
Q ss_pred CCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccc
Q 039265 463 LASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 463 ~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~ 542 (708)
||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++.
T Consensus 246 -------~~di~APG~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 309 (347)
T 2iy9_A 246 -------WVDIAAPGQNITFLRPD---------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYP 309 (347)
T ss_dssp -------TCSEEEECSSEEEECTT---------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECG
T ss_pred -------CCEEEeCCCCeEeecCC---------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 67999999999999986 78999999999999999999999999999999999999999999875
Q ss_pred cCCccccccCCCCCCCCccCCCCCCcCCCCCCc
Q 039265 543 MNGERIVDETLRPADIFAIGAGHVNPSRANDPG 575 (708)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 575 (708)
.. ....+|+|+||+.+|++..
T Consensus 310 ~~------------~~~~~G~G~ld~~~A~~~~ 330 (347)
T 2iy9_A 310 SL------------VDKVTEGRVLNAEKAISMF 330 (347)
T ss_dssp GG------------TTTSGGGEECCHHHHHHHH
T ss_pred CC------------CCccccCCEecHHHHHHHH
Confidence 43 2268999999999999843
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=431.82 Aligned_cols=273 Identities=26% Similarity=0.328 Sum_probs=220.1
Q ss_pred CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChH
Q 039265 100 MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGT 179 (708)
Q Consensus 100 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGT 179 (708)
+++|+....++||+|||||||||++||+|.++ .+.+..+|..+. .....|.+||||
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------~~~~~~~~~~~~----~~~~~d~~gHGT 66 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------DLTRLPSLVSGE----ANANGSMSTHGT 66 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------EEEECC--------------CCCCHHHH
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------cccCCCcccCCC----CCCCCCCCCchH
Confidence 45999987779999999999999999999854 223333343321 223457789999
Q ss_pred HHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCC-CCCCC
Q 039265 180 HVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGS-VPFFN 258 (708)
Q Consensus 180 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~-~~~~~ 258 (708)
||||||+|+.. +.+.||||+|+|+.+|++.+....+...++++||+||++++++|||+|||... .....
T Consensus 67 hVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~~~~~ 136 (306)
T 4h6w_A 67 HVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDAGEAD 136 (306)
T ss_dssp HHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCC
T ss_pred HHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccCCCcc
Confidence 99999998741 12479999999999999876522367888999999999999999999999643 23345
Q ss_pred CHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeE
Q 039265 259 DSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPL 338 (708)
Q Consensus 259 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (708)
..+..++..+.++|+++|+||||+|.....+|+..+++|+|||++.
T Consensus 137 ~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~---------------------------------- 182 (306)
T 4h6w_A 137 TWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD---------------------------------- 182 (306)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT----------------------------------
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC----------------------------------
Confidence 5678888899999999999999999988888999999999998521
Q ss_pred EEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcH
Q 039265 339 VYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSN 418 (708)
Q Consensus 339 ~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~ 418 (708)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcce
Q 039265 419 DAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIF 498 (708)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y 498 (708)
.+.++.||++|+. ..||||+|||.+|+++++. +.|
T Consensus 183 -------------------------------~~~~~~~s~~g~~-----~~~~di~APG~~i~s~~~~---------~~~ 217 (306)
T 4h6w_A 183 -------------------------------QGKPVDFSNWGDA-----YQKQGILAPGKDILGAKPN---------GGT 217 (306)
T ss_dssp -------------------------------TSCBCSSSCBCHH-----HHHHEEEEECSSEEEECTT---------SCE
T ss_pred -------------------------------CCCccccccccCC-----cCcceeecCCcCcccccCC---------Cce
Confidence 1256788999964 4689999999999999987 789
Q ss_pred eeccchhhhHHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCC
Q 039265 499 NIMSGTSMACPHLSGIAALLKS----SHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDP 574 (708)
Q Consensus 499 ~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 574 (708)
..++|||||||||||++|||++ ++|.|+|+|||++|++||+++...+ ......||+|+||+.+|++.
T Consensus 218 ~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~---------~~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 218 IRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD---------TDDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT---------CSCGGGGTTCBCCHHHHHHH
T ss_pred eccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC---------CCCCCCcceeecCHHHHHHH
Confidence 9999999999999999999986 4699999999999999999875432 12345799999999999973
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=470.12 Aligned_cols=408 Identities=23% Similarity=0.247 Sum_probs=272.6
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFV 190 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 190 (708)
+|+|||||||+|.+|++.... ..|+...+.+...+.+.+..++.++.+. .....|++||||||||||||..
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg~F~D~v~~~~n~~Ddgd~--~~~v~D~~GHGThVAGIIAa~~- 284 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETRNVDDFLSISVNVHDEGNV--LEVVGMSSPHGTHVSSIASGNH- 284 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCCEESSSCEEEEEEEGGGTE--EEEEECCCHHHHHHHHHHCCCC-
T ss_pred CEEEEEEeCCCCCCccccccc------ccccccccccccccccCCCCccCCCCCc--cccCCCCCCcHHHHHHHHhcCC-
Confidence 699999999998776654310 0111111100001122222233221000 1123578999999999999985
Q ss_pred cCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHH-----CCCcEEEEccCCCCCCCCCCHHHHH
Q 039265 191 KNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIE-----DGVDVLSISIGGGSVPFFNDSIAVG 264 (708)
Q Consensus 191 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~-----~g~dVIn~S~G~~~~~~~~~~~~~a 264 (708)
++ ..+.||||+|+|+.+|+++..... ....+++.+|.+|++ +|++|||||||........+.+..+
T Consensus 285 N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~~~~~~~l~~a 356 (1354)
T 3lxu_X 285 SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGEL 356 (1354)
T ss_dssp SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCSCSSCCHHHHH
T ss_pred CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCCCCccHHHHHH
Confidence 21 123899999999999999765211 356778888888887 7999999999987544445677778
Q ss_pred HHHHH-hcCceEEEecCCCCCCCCc--ccC--CCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEE
Q 039265 265 SFAAI-QKGIFVSCAAGNSGPFNST--ISN--EAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLV 339 (708)
Q Consensus 265 ~~~a~-~~Gv~vV~AAGN~g~~~~~--~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (708)
+.++. ++|++||+||||+|....+ +++ .++++|+|||++........
T Consensus 357 I~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~---------------------------- 408 (1354)
T 3lxu_X 357 MNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE---------------------------- 408 (1354)
T ss_dssp HHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----------------------------
T ss_pred HHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccc----------------------------
Confidence 87876 8999999999999986543 456 38999999997432210000
Q ss_pred EecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHH
Q 039265 340 YAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSND 419 (708)
Q Consensus 340 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 419 (708)
|..
T Consensus 409 ys~----------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 409 YAM----------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCccee
Q 039265 420 AGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFN 499 (708)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~ 499 (708)
.....+.++.|||+||+. ++++||||+|||++|+++..... ++|.
T Consensus 412 --------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~~-------~~y~ 456 (1354)
T 3lxu_X 412 --------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFTM-------SKSQ 456 (1354)
T ss_dssp --------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC----------------------
T ss_pred --------------------------ccCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCCC-------Ccee
Confidence 001123789999999998 68999999999999999865322 7899
Q ss_pred eccchhhhHHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCCc
Q 039265 500 IMSGTSMACPHLSGIAALLKS----SHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPG 575 (708)
Q Consensus 500 ~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 575 (708)
.++|||||||||||++|||++ .+|+|++.+||++|++||+++.. ..++.||+|+||+.+|++..
T Consensus 457 ~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~------------~~~~~~G~GlLDa~~AV~~a 524 (1354)
T 3lxu_X 457 LMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------VDPFAQGHGLLNVEKAFEHL 524 (1354)
T ss_dssp CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT------------SCTTTSSSSBCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC------------CCcccccCCEeCHHHHHHHH
Confidence 999999999999999999986 89999999999999999998743 24568999999999999999
Q ss_pred ccccCCCCCcccccccCCCCc-ceeEEEecCCccccccCcccccCCCceEEEEEEEec----C---CC-ceeE--EEEEe
Q 039265 576 LVYDIQPDDYIPYLCGLGYSD-KEVGILVHRPVAQLNYPSFSVTLGPAQTFTRTVTNV----G---QV-YSSY--AVNVV 644 (708)
Q Consensus 576 l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~ps~~~~~~~~~~~~~tv~n~----g---~~-~~ty--~~~~~ 644 (708)
+.++..+.+++.|.|..+... ..+... . ... ....+++++|+-+ . .. ...| ++.+.
T Consensus 525 ~~~~~~p~~~v~f~~~v~~~~~rgIylR--~----~~~-------~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~ 591 (1354)
T 3lxu_X 525 TEHRQSKDNMLRFSVRVGNNADKGIHLR--Q----GVQ-------RNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLI 591 (1354)
T ss_dssp HTTTTCGGGGEEEEEEETTTTBSSEEEC--S----SCC-------CSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEE
T ss_pred HhcCCCCccceEEEEEecCCCCCceEEe--c----ccc-------CCceEEEEEEeeeecCcccCChhhccceEEEEEEe
Confidence 999999999999999887532 223221 1 000 1134455444321 1 11 1112 22332
Q ss_pred CC-CCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc-----CceEEEEeEEEEeC
Q 039265 645 AP-QGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS-----AKYSVRSPISVRLQ 708 (708)
Q Consensus 645 ~~-~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~-----~~~~~~~P~~~~~~ 708 (708)
.. +-+ + -|+.+.+. ++.++|.|++++..... +.+++.|..-| .+..+|+||.|..+
T Consensus 592 ~t~~wv--~-~p~~l~l~--~~~r~~~v~vDp~~L~~---G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P 653 (1354)
T 3lxu_X 592 ASQPWV--Q-CGAFLDLS--YGTRSIAVRVDPTGLQP---GVHSAVIRAYDTDCVQKGSLFEIPVTVVQP 653 (1354)
T ss_dssp ESSTTE--E-ECSCEECT--TSCEEEEEEECGGGCCS---EEEEEEEEEEESSCTTSCCSEEEEEEEEEC
T ss_pred cCCCce--e-cccceeec--CCCceEEEEECCCCCCC---cceeEEEEEEEcCCcccCceEEeeEEEEee
Confidence 22 222 2 38888774 68899999999998866 89999999775 47999999999864
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=440.51 Aligned_cols=288 Identities=28% Similarity=0.352 Sum_probs=225.3
Q ss_pred Ccccc-cCCCCCccEEEEEcCCCCC------CCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCC
Q 039265 100 MGVWK-ESNFGKGVIIGILDGGINP------DHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPI 172 (708)
Q Consensus 100 ~~~~~-~g~~G~Gv~VaVIDtGid~------~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~ 172 (708)
+.+|. .+++|+||+|||||||||. .||+|.++ +...++|.. ...+.
T Consensus 11 ~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~---------------------i~~~~~~~~------~~~~~ 63 (434)
T 1wmd_A 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK---------------------ITALYALGR------TNNAN 63 (434)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC---------------------EEEEEETTT------TTCCC
T ss_pred hhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC---------------------EeeeccccC------CCCCC
Confidence 45897 7999999999999999999 79999753 445566653 23567
Q ss_pred CCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCC---CHHHHHHHHHHHHHCCCcEEEEcc
Q 039265 173 DVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDC---TESDLLAGLDAAIEDGVDVLSISI 249 (708)
Q Consensus 173 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~---~~~~i~~ai~~a~~~g~dVIn~S~ 249 (708)
|..||||||||||+|+.. + +.||||+|+|+.+|++... +. ...++.++|++|+++|++||||||
T Consensus 64 d~~gHGT~VAgiiag~g~----------~-~~GvAp~a~l~~~~v~~~~--g~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 130 (434)
T 1wmd_A 64 DTNGHGTHVAGSVLGNGS----------T-NKGMAPQANLVFQSIMDSG--GGLGGLPSNLQTLFSQAYSAGARIHTNSW 130 (434)
T ss_dssp CSSSHHHHHHHHHHCCSS----------S-SCCSSTTSEEEEEECCCTT--SSCTTSCSSHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCcHHHHHHHHHcCCC----------C-ceeeCCCCEEEEEEeecCC--CccccccHHHHHHHHHHHhcCCeEEEecC
Confidence 889999999999998631 1 3799999999999999766 42 456799999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHH-HhcCceEEEecCCCCCCC--CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 250 GGGSVPFFNDSIAVGSFAA-IQKGIFVSCAAGNSGPFN--STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 250 G~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
|......+ +....++.++ .++|+++|+||||+|... ..+|+.++++|+|||++..+..
T Consensus 131 G~~~~~~~-~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~------------------ 191 (434)
T 1wmd_A 131 GAAVNGAY-TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS------------------ 191 (434)
T ss_dssp CBCCTTCC-CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG------------------
T ss_pred CCCcCCcC-CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcc------------------
Confidence 98642222 3445555555 589999999999999764 4567889999999997432100
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
.+ .
T Consensus 192 --------------------------------------------~~-~-------------------------------- 194 (434)
T 1wmd_A 192 --------------------------------------------FG-S-------------------------------- 194 (434)
T ss_dssp --------------------------------------------GC-G--------------------------------
T ss_pred --------------------------------------------cC-c--------------------------------
Confidence 00 0
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecC
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFE 486 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~ 486 (708)
+ ....+.++.||++||+. ++++||||+|||++|+++++.
T Consensus 195 --------------------~-------------------~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~ 233 (434)
T 1wmd_A 195 --------------------Y-------------------ADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSS 233 (434)
T ss_dssp --------------------G-------------------GSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCT
T ss_pred --------------------c-------------------cCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCC
Confidence 0 01134789999999998 689999999999999999853
Q ss_pred CCCC---CCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHccccccccCCccccccCCCCCCC
Q 039265 487 PLDF---NTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYW-----SPAAIKSALMTTADLLNMNGERIVDETLRPADI 558 (708)
Q Consensus 487 ~~~~---~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~-----s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~ 558 (708)
.... .....+.|..++|||||||||||+||||+|++|++ ++++||++|++||+++.. ..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-----------~~~~ 302 (434)
T 1wmd_A 234 LAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPN 302 (434)
T ss_dssp TCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSC
T ss_pred CCCCcccccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-----------CCCC
Confidence 2100 00012689999999999999999999999998865 899999999999987521 2466
Q ss_pred CccCCCCCCcCCCCCCc
Q 039265 559 FAIGAGHVNPSRANDPG 575 (708)
Q Consensus 559 ~~~G~G~vn~~~Al~~~ 575 (708)
..||||+||+.+|++..
T Consensus 303 ~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 303 GNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp TTTTTCBCCHHHHHTCE
T ss_pred ccCCcCeEeHHHhcccc
Confidence 89999999999999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-49 Score=409.23 Aligned_cols=235 Identities=31% Similarity=0.467 Sum_probs=204.2
Q ss_pred CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChH
Q 039265 100 MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGT 179 (708)
Q Consensus 100 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGT 179 (708)
..+|..+++|+||+|||||||||++||+|.++ +...++|... ...+.|..||||
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------~~~~~~~~~~-----~~~~~d~~gHGT 72 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------SVSGYDFVDN-----DADSSDCNGHGT 72 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------EEEEEETTTT-----BSCCCCSSSHHH
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------ccccccccCC-----CCCCCCCCCcHH
Confidence 45899999999999999999999999999753 4445667654 235678999999
Q ss_pred HHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC--CCcEEEEccCCCCCCC
Q 039265 180 HVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED--GVDVLSISIGGGSVPF 256 (708)
Q Consensus 180 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~--g~dVIn~S~G~~~~~~ 256 (708)
||||||+|.. .||||+|+|+.+|+++.. + +..+++++||+|++++ +++|||||||...
T Consensus 73 ~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~--g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~--- 133 (284)
T 1sh7_A 73 HVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCS--GSGTTSGVISGVDWVAQNASGPSVANMSLGGGQ--- 133 (284)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECBCTT--SCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSC---
T ss_pred HHHHHHhccc--------------CCcCCCCEEEEEEeeCCC--CCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCC---
Confidence 9999999873 699999999999999876 5 6788999999999984 7999999999862
Q ss_pred CCCHHHHHHHHHHhcCceEEEecCCCCCCCC-cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCc
Q 039265 257 FNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS-TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTP 335 (708)
Q Consensus 257 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (708)
...+..++.++.++|++||+||||+|.... .+|+..+++|+||+++.
T Consensus 134 -~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------------------- 181 (284)
T 1sh7_A 134 -STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS------------------------------- 181 (284)
T ss_dssp -CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT-------------------------------
T ss_pred -CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC-------------------------------
Confidence 457778888899999999999999997653 45788999999998521
Q ss_pred eeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEE
Q 039265 336 LPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATH 415 (708)
Q Consensus 336 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~ 415 (708)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCC
Q 039265 416 VSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPK 495 (708)
Q Consensus 416 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~ 495 (708)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 182 ----------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~--------- 210 (284)
T 1sh7_A 182 ----------------------------------SDSRSSFSNWGSCV--------DLFAPGSQIKSAWYD--------- 210 (284)
T ss_dssp ----------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTT---------
T ss_pred ----------------------------------CCCcCcccCCCCcc--------EEEeccCCeEEecCC---------
Confidence 12678999999965 999999999999876
Q ss_pred cceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccc
Q 039265 496 SIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 496 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~ 542 (708)
+.|..++|||||||||||++|||+|++|+|+++|||++|++||++..
T Consensus 211 ~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 211 GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 78999999999999999999999999999999999999999999764
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-50 Score=428.94 Aligned_cols=292 Identities=27% Similarity=0.322 Sum_probs=220.5
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCccccccc-------CCCCCceeEeeeecccCC---CCCC-
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCD-------FSTCNNKLIGARTFNIEG---NVKG- 167 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~-------~~~~~~kv~g~~~~~~~~---~~~~- 167 (708)
+..+|+.+++|+||+||||||||+ +||+|.++-.. .|+-... .+...... ...++...+ ..+.
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~ 94 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPF-DEGDWFDNWACGGRPDP 94 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCB-CCCCCBCTTTTSCTTCG
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCcc-ccccccccccccCCCCc
Confidence 456999999999999999999998 99999854211 1110000 00000000 000000000 0000
Q ss_pred CCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH--------
Q 039265 168 TEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-------- 239 (708)
Q Consensus 168 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-------- 239 (708)
.....|..||||||||||+|...+.. + +.||||+|+|+.+|++... ++..++++++|+||++
T Consensus 95 ~~~~~d~~gHGT~vAgiia~~~~~~~-------g-~~GvAp~a~l~~~~v~~~~--~~~~~~~~~ai~~a~~~~~~~~~~ 164 (340)
T 3lpc_A 95 RKERSDSSWHGSHVAGTIAAVTNNRI-------G-VAGVAYGAKVVPVRALGRC--GGYDSDISDGLYWAAGGRIAGIPE 164 (340)
T ss_dssp GGSCBCCCCHHHHHHHHHHCCCSSSS-------S-CCCTTTTSEEEEEECCBTT--BCCHHHHHHHHHHHHTCCCTTSCC
T ss_pred ccCCCCCCCCHHHHHHHHHccCCCCC-------c-ceeecCCCEEEEEEEecCC--CCcHHHHHHHHHHHhccccccccc
Confidence 22356889999999999999753322 2 3799999999999999887 6888999999999998
Q ss_pred --CCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC-cccCCCCceEEEcccccCcceEEEEEcCC
Q 039265 240 --DGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS-TISNEAPWILTVGASTLDRSIVATAKLGN 316 (708)
Q Consensus 240 --~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~ 316 (708)
.+++|||||||... .....+..++.++.++|++||+||||+|.... .+++..+++|+|||++.
T Consensus 165 ~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------ 230 (340)
T 3lpc_A 165 NRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS------------ 230 (340)
T ss_dssp CSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT------------
T ss_pred ccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC------------
Confidence 89999999999753 22356777788899999999999999997754 46788899999998521
Q ss_pred CceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEec
Q 039265 317 REEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMN 396 (708)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~ 396 (708)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeC
Q 039265 397 DEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGP 476 (708)
Q Consensus 397 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~AP 476 (708)
.+.++.||++|| ||||+||
T Consensus 231 -----------------------------------------------------~~~~~~~S~~g~--------~~di~Ap 249 (340)
T 3lpc_A 231 -----------------------------------------------------RGIRASFSNYGV--------DVDLAAP 249 (340)
T ss_dssp -----------------------------------------------------TSSBCTTCCBST--------TCCEEEE
T ss_pred -----------------------------------------------------CCCcCCCCCCCC--------CceEEec
Confidence 126789999997 4599999
Q ss_pred CCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhc-C---CCCCHHHHHHHHHccccccccCCccccccC
Q 039265 477 GLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS-H---PYWSPAAIKSALMTTADLLNMNGERIVDET 552 (708)
Q Consensus 477 G~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~ 552 (708)
|.+|+++++... .....+.|..++|||||||+|||++|||+|+ + |.+++++||++|++||+++..
T Consensus 250 G~~i~s~~~~~~--~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~--------- 318 (340)
T 3lpc_A 250 GQDILSTVDSGT--RRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG--------- 318 (340)
T ss_dssp CSSEEEEEESCS--SSCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS---------
T ss_pred CCCeecccCCCC--cCCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC---------
Confidence 999999987632 1122356999999999999999999999998 5 999999999999999998742
Q ss_pred CCCCCCCccCCCCCCcCCCCCCc
Q 039265 553 LRPADIFAIGAGHVNPSRANDPG 575 (708)
Q Consensus 553 ~~~~~~~~~G~G~vn~~~Al~~~ 575 (708)
.....||+|+||+.+||+..
T Consensus 319 ---~~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 319 ---RLDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp ---CCSSCCCSSBCCHHHHHHHH
T ss_pred ---CCCCCcccceecHHHHHHHH
Confidence 24569999999999998743
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=404.27 Aligned_cols=237 Identities=32% Similarity=0.449 Sum_probs=203.5
Q ss_pred CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChH
Q 039265 100 MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGT 179 (708)
Q Consensus 100 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGT 179 (708)
..+|..+++|+||+|||||||||++||+|.++ +...++|..+ ..++.|..||||
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------~~~~~d~~~~-----~~~~~d~~gHGT 74 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------ASSGYDFIDN-----DYDATDCNGHGT 74 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------EEEEEETTTT-----BSCCCCSSSHHH
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------cccCeecCCC-----CCCCCCCCCcHH
Confidence 45799999999999999999999999999753 3445667653 235678999999
Q ss_pred HHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHH--CCCcEEEEccCCCCCCC
Q 039265 180 HVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIE--DGVDVLSISIGGGSVPF 256 (708)
Q Consensus 180 hVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~--~g~dVIn~S~G~~~~~~ 256 (708)
||||||+|.. .||||+|+|+.+|++++. + +..+++++||+|+++ .+++|||||||...
T Consensus 75 ~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~--g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~--- 135 (278)
T 2b6n_A 75 HVAGTIGGST--------------YGVAKNVNVVGVRVLNCS--GSGSNSGVIAGINWVKNNASGPAVANMSLGGGA--- 135 (278)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECSCTT--SCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC---
T ss_pred HHHHHHHCCC--------------cCCCCCCeEEEEEEECCC--CCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc---
Confidence 9999999863 699999999999999876 5 678899999999998 58999999999863
Q ss_pred CCCHHHHHHHHHHhcCceEEEecCCCCCCCC-cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCc
Q 039265 257 FNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS-TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTP 335 (708)
Q Consensus 257 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (708)
...+..++.++.++|+++|+||||+|.... .+|+..+++|+|||++.
T Consensus 136 -~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------------------- 183 (278)
T 2b6n_A 136 -SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS------------------------------- 183 (278)
T ss_dssp -CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------------------------
T ss_pred -CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC-------------------------------
Confidence 356777888899999999999999998654 35788899999998521
Q ss_pred eeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEE
Q 039265 336 LPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATH 415 (708)
Q Consensus 336 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~ 415 (708)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCC
Q 039265 416 VSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPK 495 (708)
Q Consensus 416 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~ 495 (708)
.+.++.||++||.. ||+|||++|+++++...
T Consensus 184 ----------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~~------- 214 (278)
T 2b6n_A 184 ----------------------------------NDSRSSFSNYGTCL--------DIYAPGSSITSSWYTSN------- 214 (278)
T ss_dssp ----------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTST-------
T ss_pred ----------------------------------CCCcCCcCCCCCCC--------eEEeCCCCeECcccCCC-------
Confidence 12678899999854 99999999999986532
Q ss_pred cceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccc
Q 039265 496 SIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 496 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~ 542 (708)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||++..
T Consensus 215 ~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 215 SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 68999999999999999999999999999999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=403.35 Aligned_cols=237 Identities=30% Similarity=0.438 Sum_probs=205.3
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
...+|..+++|+||+|||||||||++||+|.++ +...++|.. ....|..|||
T Consensus 20 ~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------~~~~~~~~~-------~~~~d~~gHG 71 (276)
T 4dzt_A 20 LSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------ARVGYDALG-------GNGQDCNGHG 71 (276)
T ss_dssp CCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------EEEEEETTS-------SCSCCSSSHH
T ss_pred cccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------eeccccCCC-------CCCCCCCCCH
Confidence 355899999999999999999999999999753 444556653 3567889999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC--CCcEEEEccCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED--GVDVLSISIGGGSVP 255 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~--g~dVIn~S~G~~~~~ 255 (708)
|||||||+|.. .||||+|+|+.+|++++. + ....+++++++|++++ +++|||||||...
T Consensus 72 T~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~--~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~-- 133 (276)
T 4dzt_A 72 THVAGTIGGVT--------------YGVAKAVNLYAVRVLDCN--GSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV-- 133 (276)
T ss_dssp HHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT--SCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--
T ss_pred HHHHHHHHccc--------------cCCCCCCEEEEEEEeCCC--CCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC--
Confidence 99999999873 699999999999999876 5 7888999999999987 8999999999753
Q ss_pred CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc-cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCC
Q 039265 256 FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI-SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQT 334 (708)
Q Consensus 256 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (708)
...+..++.++.++|+++|+||||+|...... ++..+++|+|||.+.
T Consensus 134 --~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------------------ 181 (276)
T 4dzt_A 134 --STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------------------------------ 181 (276)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------------------------------
T ss_pred --CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC------------------------------
Confidence 46777888899999999999999999776544 788899999998521
Q ss_pred ceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceE
Q 039265 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPAT 414 (708)
Q Consensus 335 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~ 414 (708)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCC
Q 039265 415 HVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNP 494 (708)
Q Consensus 415 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~ 494 (708)
.+.++.||++||.. ||+|||++|+++++...
T Consensus 182 -----------------------------------~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~~------ 212 (276)
T 4dzt_A 182 -----------------------------------SDARASFSNYGSCV--------DLFAPGASIPSAWYTSD------ 212 (276)
T ss_dssp -----------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECTTSS------
T ss_pred -----------------------------------CCCcCCcCCCCCCc--------eEEeCCCCeEccccCCC------
Confidence 22678999999976 99999999999987632
Q ss_pred CcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccccccc
Q 039265 495 KSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNM 543 (708)
Q Consensus 495 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~ 543 (708)
..|..++|||||||+|||++|||+|++|++++++||++|++||++...
T Consensus 213 -~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 213 -TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp -SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred -CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 689999999999999999999999999999999999999999998643
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=403.70 Aligned_cols=239 Identities=33% Similarity=0.457 Sum_probs=204.5
Q ss_pred ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHH
Q 039265 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHV 181 (708)
Q Consensus 102 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThV 181 (708)
.|+ ..+|+||+|+|||||||++||+|.++ +...++|.. .+.|..||||||
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------~~~~~~~~~--------~~~d~~gHGT~v 73 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------AQMVKTYYY--------SSRDGNGHGTHC 73 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------EEEEEESSS--------CSSCSSSHHHHH
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------cccccCCCC--------CCCCCCCCHHHH
Confidence 344 37999999999999999999999753 334555651 356789999999
Q ss_pred HHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCC-------cEEEEccCCCC
Q 039265 182 AGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGV-------DVLSISIGGGS 253 (708)
Q Consensus 182 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~-------dVIn~S~G~~~ 253 (708)
||||+|.. .||||+|+|+.+|++++. + +..+++++||+|++++++ +|||||||..
T Consensus 74 Agiia~~~--------------~GvAp~a~i~~~~v~~~~--g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~- 136 (279)
T 2pwa_A 74 AGTVGSRT--------------YGVAKKTQLFGVKVLDDN--GSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG- 136 (279)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECSCTT--SCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-
T ss_pred HHHHHhcc--------------cccCCCCEEEEEEeEcCC--CCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC-
Confidence 99999862 699999999999999876 5 788999999999999887 9999999975
Q ss_pred CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC-cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCC
Q 039265 254 VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS-TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFP 332 (708)
Q Consensus 254 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (708)
....+..++.++.++|++||+||||+|.... .+|+..|++|+|||++.
T Consensus 137 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------------------- 185 (279)
T 2pwa_A 137 ---YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------------------------- 185 (279)
T ss_dssp ---CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC----------------------------
Confidence 2467788888999999999999999998653 45788999999999521
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccc
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLP 412 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p 412 (708)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCC
Q 039265 413 ATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNT 492 (708)
Q Consensus 413 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~ 492 (708)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 186 -------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~------ 214 (279)
T 2pwa_A 186 -------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG------ 214 (279)
T ss_dssp -------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEETT------
T ss_pred -------------------------------------CCCcCCcCCCCCcc--------eEEEecCCeEEeecC------
Confidence 12678999999865 999999999999986
Q ss_pred CCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCc
Q 039265 493 NPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNP 568 (708)
Q Consensus 493 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 568 (708)
+.|..++|||||||||||++|||+|+ |++++.+||++|++||++... ..+|+|.+|+
T Consensus 215 ---~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~---------------~~~~~g~~n~ 271 (279)
T 2pwa_A 215 ---GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL---------------SNIPFGTVNL 271 (279)
T ss_dssp ---TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC---------------BSCCTTSCCE
T ss_pred ---CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc---------------CCCCCCCccE
Confidence 78999999999999999999999999 999999999999999997532 2467888777
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=427.65 Aligned_cols=293 Identities=16% Similarity=0.181 Sum_probs=219.2
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC-CCCCCCCCCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG-TEPPIDVDGH 177 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~-~~~~~d~~gH 177 (708)
+..+|+.+++|+||+|||||||||++||+|.++-.. ...++|......+. ...+.|..+|
T Consensus 27 ~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~~-------------------~~~~d~~~~~~~p~~~~~~~d~~gH 87 (471)
T 1p8j_A 27 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDP-------------------GASFDVNDQDPDPQPRYTQMNDNRH 87 (471)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBCG-------------------GGCEETTTTBSCCCCCCCTTCTTCH
T ss_pred hHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccCc-------------------cCcccccCCCCCCCCccCCCCCCCc
Confidence 456999999999999999999999999999853100 01344554322111 1245688999
Q ss_pred hHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEEccCCCCCC-
Q 039265 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-DGVDVLSISIGGGSVP- 255 (708)
Q Consensus 178 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~- 255 (708)
||||||||||...++ .+ +.||||+|+|+.+|+++ +..+++++|++++++ ++++|||||||.....
T Consensus 88 GT~vAGiiaa~~~n~-------~g-~~GvAp~a~i~~~rv~~-----g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~ 154 (471)
T 1p8j_A 88 GTRCAGEVAAVANNG-------VC-GVGVAYNARIGGVRMLD-----GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGK 154 (471)
T ss_dssp HHHHHHHHHCCSSSS-------SS-CCCTTTTSEEEEEECSS-----SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSS
T ss_pred HHHHHHHHHeeccCC-------CC-CEEECCCCeEEEEEccC-----CchhHHHHHHHhhhccCCCeEEEeccCcCCCCC
Confidence 999999999975322 12 37999999999999985 235689999999999 8999999999975321
Q ss_pred ---CCCCHHHHHHHHHHh-----cCceEEEecCCCCCCCCc----ccCCCCceEEEcccccCcceEEEEEcCCCceeeee
Q 039265 256 ---FFNDSIAVGSFAAIQ-----KGIFVSCAAGNSGPFNST----ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGE 323 (708)
Q Consensus 256 ---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 323 (708)
.....+..++.++.+ +|++||+||||+|..... ....++++|+|||++.
T Consensus 155 ~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~------------------- 215 (471)
T 1p8j_A 155 TVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ------------------- 215 (471)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT-------------------
T ss_pred cccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC-------------------
Confidence 112334455555543 699999999999976322 1234689999998521
Q ss_pred eccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc
Q 039265 324 SVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS 403 (708)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~ 403 (708)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEee
Q 039265 404 VIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAA 483 (708)
Q Consensus 404 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa 483 (708)
.+.++.||++||... ...+|...+||.+|+++
T Consensus 216 ----------------------------------------------~g~~a~~S~~g~~~~--~~~~~~~~~~g~~i~st 247 (471)
T 1p8j_A 216 ----------------------------------------------FGNVPWYSEACSSTL--ATTYSSGNQNEKQIVTT 247 (471)
T ss_dssp ----------------------------------------------TSCCCTTCCBCTTCC--EEEECCCSTTSCCEEEE
T ss_pred ----------------------------------------------CCCcccccCCCCcce--EEeCCCCCCCCCCEEEe
Confidence 126788999999872 34556666667899999
Q ss_pred ecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCC
Q 039265 484 WFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGA 563 (708)
Q Consensus 484 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~ 563 (708)
.+.. +.|..++|||||||||||+||||+|++|+|++++||++|++||++++.....+............|||
T Consensus 248 ~~~~--------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~ 319 (471)
T 1p8j_A 248 DLRQ--------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGY 319 (471)
T ss_dssp ETTT--------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBT
T ss_pred eCCC--------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCCCCC
Confidence 8641 57999999999999999999999999999999999999999999986544333322222234579999
Q ss_pred CCCCcCCCCCCcccc
Q 039265 564 GHVNPSRANDPGLVY 578 (708)
Q Consensus 564 G~vn~~~Al~~~l~~ 578 (708)
|+||+.+||+....+
T Consensus 320 G~vda~~Av~~a~~~ 334 (471)
T 1p8j_A 320 GLLDAGAMVALAQNW 334 (471)
T ss_dssp CBCCHHHHHHHHHTC
T ss_pred EEEcHhHHHHHhhcc
Confidence 999999999865443
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=423.01 Aligned_cols=285 Identities=21% Similarity=0.257 Sum_probs=218.2
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+..+|+.+++|+||+|||||||||++||+|.++-.. .+.++|..+... ..+..|..|||
T Consensus 43 ~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~~-------------------~~~~d~~~~~~~--~~p~~d~~gHG 101 (503)
T 2id4_A 43 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-------------------EGSWDFNDNTNL--PKPRLSDDYHG 101 (503)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG-------------------GGCEETTTTBSC--CCCCSTTTTHH
T ss_pred hHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcccc-------------------cCcccCCCCCCC--CCCCCCCCChH
Confidence 456999999999999999999999999999864110 123455543211 12235788999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC---
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP--- 255 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--- 255 (708)
|||||||||...++ .+ +.||||+|+|+.+|+++.. ++..++++||+|+++++ +|||||||.....
T Consensus 102 T~vAGiiaa~~~n~-------~~-~~GvAp~a~i~~~rv~~~~---~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~~~~ 169 (503)
T 2id4_A 102 TRCAGEIAAKKGNN-------FC-GVGVGYNAKISGIRILSGD---ITTEDEAASLIYGLDVN-DIYSCSWGPADDGRHL 169 (503)
T ss_dssp HHHHHHHHCCSSSS-------SS-CCCTTTTSEEEEEECTTSC---CCHHHHHHHTTTTTTTC-SEEEECEESCCSSSCC
T ss_pred HHHHHHHHhccCCC-------CC-cEEECCCCEEEEEEeeCCC---CChHHHHHHHHhHhhcC-CEEEeCCCcCCCCccc
Confidence 99999999975222 22 3799999999999998643 67888999999999988 9999999975321
Q ss_pred -CCCCHHHHHHHHHH-----hcCceEEEecCCCCCCC--Cccc--CCCCceEEEcccccCcceEEEEEcCCCceeeeeec
Q 039265 256 -FFNDSIAVGSFAAI-----QKGIFVSCAAGNSGPFN--STIS--NEAPWILTVGASTLDRSIVATAKLGNREEFDGESV 325 (708)
Q Consensus 256 -~~~~~~~~a~~~a~-----~~Gv~vV~AAGN~g~~~--~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 325 (708)
.....+..++.++. .+|+++|+||||+|... +.++ ..++++|+|||++.
T Consensus 170 ~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~--------------------- 228 (503)
T 2id4_A 170 QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH--------------------- 228 (503)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT---------------------
T ss_pred cCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC---------------------
Confidence 12234566666665 47999999999999753 2333 35678999998521
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc
Q 039265 326 FQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI 405 (708)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~ 405 (708)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceee----CCCcEE
Q 039265 406 ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIG----PGLSIL 481 (708)
Q Consensus 406 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~A----PG~~I~ 481 (708)
.+.++.||++||.. |++| ||..|+
T Consensus 229 --------------------------------------------~~~~a~~S~~g~~~--------~~~a~~~gpG~~I~ 256 (503)
T 2id4_A 229 --------------------------------------------KDLHPPYSEGCSAV--------MAVTYSSGSGEYIH 256 (503)
T ss_dssp --------------------------------------------TSCCCTTCCCCTTE--------EEEEECSBTTBCEE
T ss_pred --------------------------------------------CCCcCCcCCCCCcc--------eEeecCCCCCCceE
Confidence 12678899999987 8887 899999
Q ss_pred eeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccC-CccccccCCCCCCCCc
Q 039265 482 AAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMN-GERIVDETLRPADIFA 560 (708)
Q Consensus 482 sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~-~~~~~~~~~~~~~~~~ 560 (708)
++... .+.|..++|||||||||||++|||+|++|+|++++||++|++||+++... ...+............
T Consensus 257 st~~~--------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~~~~~ 328 (503)
T 2id4_A 257 SSDIN--------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 328 (503)
T ss_dssp EECST--------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTT
T ss_pred eecCC--------CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCccCcc
Confidence 99543 17899999999999999999999999999999999999999999988654 2222222222234578
Q ss_pred cCCCCCCcCCCCCCccc
Q 039265 561 IGAGHVNPSRANDPGLV 577 (708)
Q Consensus 561 ~G~G~vn~~~Al~~~l~ 577 (708)
||||+||+++||+....
T Consensus 329 ~G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 329 YGFGKIDAHKLIEMSKT 345 (503)
T ss_dssp TBTCBCCHHHHHHHHTS
T ss_pred cCCcEecHHHHHHHHhc
Confidence 99999999999985543
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-47 Score=415.73 Aligned_cols=276 Identities=24% Similarity=0.268 Sum_probs=203.2
Q ss_pred ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC-CCCCCCCCCChHH
Q 039265 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG-TEPPIDVDGHGTH 180 (708)
Q Consensus 102 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~-~~~~~d~~gHGTh 180 (708)
.|..+++|+||+|+|||||||++||+|.++. ....+++....+... ...+.|..|||||
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------~~~~~~~v~~~dg~~f~~~~~D~~GHGTh 77 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------MVTDFENVPEEDGTRFHRQASKCDSHGTH 77 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE--------------------EEEEEECCCCCC-------CTTTTHHHHH
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------cccCcccccCCCCccccCCCCCCCChHHH
Confidence 7888999999999999999999999998641 111112211100000 1345688999999
Q ss_pred HHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC------CCcEEEEccCCCC
Q 039265 181 VAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED------GVDVLSISIGGGS 253 (708)
Q Consensus 181 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~------g~dVIn~S~G~~~ 253 (708)
|||||+|.. .||||+|+|+.+|+++.. + ++.+++++||+|+++. +++|||||||+.
T Consensus 78 VAGIIag~~--------------~GVAP~A~L~~vkVl~~~--G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~- 140 (546)
T 2qtw_B 78 LAGVVSGRD--------------AGVAKGASMRSLRVLNCQ--GKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG- 140 (546)
T ss_dssp HHHHHHCTT--------------TCSSTTCEEEEEECSCTT--SEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE-
T ss_pred HHHHHhccC--------------CCcCCCCEEEEEEEECCC--CCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC-
Confidence 999999873 699999999999999876 5 6788999999999984 899999999975
Q ss_pred CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC-cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCC
Q 039265 254 VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS-TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFP 332 (708)
Q Consensus 254 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (708)
+...+..++.++.++|++||+||||+|.+.. .+|+..|++|+|||++.....
T Consensus 141 ---~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------------------------ 193 (546)
T 2qtw_B 141 ---YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------------------ 193 (546)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB------------------------
T ss_pred ---CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc------------------------
Confidence 3467788888999999999999999997653 457889999999996321100
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccc
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLP 412 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p 412 (708)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCC
Q 039265 413 ATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNT 492 (708)
Q Consensus 413 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~ 492 (708)
...-+.||++|+. |||+|||++|+++++...
T Consensus 194 -------------------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~~---- 224 (546)
T 2qtw_B 194 -------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS---- 224 (546)
T ss_dssp -------------------------------------CEETTEECCBSTT--------CCEEEECSSEEEECTTST----
T ss_pred -------------------------------------ccccCCcCCCCCc--------ceEEecCccEEeeccCCC----
Confidence 0001128999974 599999999999997632
Q ss_pred CCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCcccc------ccC---CCCCCCCccCC
Q 039265 493 NPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIV------DET---LRPADIFAIGA 563 (708)
Q Consensus 493 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~------~~~---~~~~~~~~~G~ 563 (708)
..|..++|||||||||||++|||+|++|+|++.|||++|++||.+....+..+. ... ..+.....+|+
T Consensus 225 ---~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~ 301 (546)
T 2qtw_B 225 ---TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGW 301 (546)
T ss_dssp ---TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--C
T ss_pred ---CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCC
Confidence 679999999999999999999999999999999999999999986532211010 000 11124567889
Q ss_pred CC--CCcCCCCC
Q 039265 564 GH--VNPSRAND 573 (708)
Q Consensus 564 G~--vn~~~Al~ 573 (708)
|+ .++..+..
T Consensus 302 ~l~~~~~w~a~s 313 (546)
T 2qtw_B 302 QLFCRTVWSAHS 313 (546)
T ss_dssp CCEEEEEECCCC
T ss_pred CcchhchhccCC
Confidence 98 77777765
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=387.82 Aligned_cols=228 Identities=31% Similarity=0.454 Sum_probs=197.4
Q ss_pred ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHH
Q 039265 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHV 181 (708)
Q Consensus 102 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThV 181 (708)
.|+.. +|+||+|||||||||++||+|.++ +...++|.. ...|..||||||
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------~~~~~~~~~--------~~~d~~gHGT~v 74 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------AKQIKSYAS--------TARDGHGHGTHC 74 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------EEEEEECSS--------SSSCSSSHHHHH
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------cccccCCCC--------CCCCCCCcHHHH
Confidence 56666 999999999999999999999753 444555653 233889999999
Q ss_pred HHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCC-------CcEEEEccCCCC
Q 039265 182 AGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDG-------VDVLSISIGGGS 253 (708)
Q Consensus 182 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g-------~dVIn~S~G~~~ 253 (708)
||||+|+. .||||+|+|+.+|+++.. + +..++++++|+|+++++ ++|||||||..
T Consensus 75 Agii~~~~--------------~GvAp~a~l~~~~v~~~~--~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~- 137 (279)
T 3f7m_A 75 AGTIGSKT--------------WGVAKKVSIFGVKVLDDS--GSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG- 137 (279)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECSCTT--SCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-
T ss_pred HHHHhcCc--------------cccCCCCEEEEEEeeCCC--CCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC-
Confidence 99999863 699999999999999876 5 78889999999999986 89999999975
Q ss_pred CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc-cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCC
Q 039265 254 VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI-SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFP 332 (708)
Q Consensus 254 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (708)
....+..++.++.++|++||+||||+|...... ++..+++|+|||.+.
T Consensus 138 ---~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------------------- 186 (279)
T 3f7m_A 138 ---YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS---------------------------- 186 (279)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------------------
T ss_pred ---ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC----------------------------
Confidence 446778888899999999999999999875444 788899999998521
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccc
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLP 412 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p 412 (708)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCC
Q 039265 413 ATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNT 492 (708)
Q Consensus 413 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~ 492 (708)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 187 -------------------------------------~~~~~~~S~~g~~~--------di~ApG~~i~s~~~~------ 215 (279)
T 3f7m_A 187 -------------------------------------NDVRSTFSNYGRVV--------DIFAPGTSITSTWIG------ 215 (279)
T ss_dssp -------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECGG------
T ss_pred -------------------------------------CCCCCCCCCCCCCC--------eEEECCCCeEeecCC------
Confidence 12678999999865 999999999999987
Q ss_pred CCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccc
Q 039265 493 NPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 493 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~ 542 (708)
+.|..++|||||||+|||++|||+|++|. ++++||++|++||++..
T Consensus 216 ---~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 216 ---GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp ---GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred ---CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 78999999999999999999999999999 99999999999999753
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=415.45 Aligned_cols=315 Identities=21% Similarity=0.177 Sum_probs=203.0
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+..+|.++++|+||+|||||||||++||||.++- ..+.++|..+.+. ..+..|+++||
T Consensus 59 v~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~--------------------~~~~~~~~~~~~d--p~p~~~~~gHG 116 (600)
T 3hjr_A 59 LWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV--------------------RPGSKNVVTGSDD--PTPTDPDTAHG 116 (600)
T ss_dssp CHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB--------------------CSCCBCTTTSSSC--CCCCSTTCCHH
T ss_pred HHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc--------------------ccCcceeecCCCC--CCCCCCCCChH
Confidence 4568999999999999999999999999998531 1123344433221 12344678999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHH-HHHHHCCCcEEEEccCCCC-CC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGL-DAAIEDGVDVLSISIGGGS-VP 255 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai-~~a~~~g~dVIn~S~G~~~-~~ 255 (708)
|||||||||.. ++.+ +.||||+|+|+.+|++++. + +..++++.|+ +++..++++|||||||... .+
T Consensus 117 ThVAGiIAa~~--------n~~g-~~GVAp~A~l~~~rvl~~~--~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~ 185 (600)
T 3hjr_A 117 TSVSGIIAAVD--------NAIG-TKGIAPRAQLQGFNLLDDN--SQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDP 185 (600)
T ss_dssp HHHHHHHHCCS--------SSSS-CCCSSTTCEEEEECTTSTT--CCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSC
T ss_pred HHHHHHHhEeC--------CCCC-cEEeCCCCEEEEEEeecCC--CCccHHHHHHHhhhhhhhcCCCEEecccCccccCC
Confidence 99999999862 2223 3799999999999999876 4 6677777666 6778889999999999753 22
Q ss_pred CCCCH-----HHHHHHHH--HhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCC
Q 039265 256 FFNDS-----IAVGSFAA--IQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQP 328 (708)
Q Consensus 256 ~~~~~-----~~~a~~~a--~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (708)
..... +..++..+ ..+|+++|+||||.+....... +.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~--------------------------- 232 (600)
T 3hjr_A 186 RSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNR--------------------------- 232 (600)
T ss_dssp CCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEE---------------------------
T ss_pred ccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------ccccc---------------------------
Confidence 22222 22222222 2589999999999764311000 00000
Q ss_pred CCCCCCceeEEEecCCCCCCCCccCCCCCC-CCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccC
Q 039265 329 KDFPQTPLPLVYAGMNGKPESAFCGNGSLS-GIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIAD 407 (708)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~ 407 (708)
.........+.|. .+ +......|.|..
T Consensus 233 ------------~g~~~~~~~~~~~---~d~~~~~~~~IsVgA------------------------------------- 260 (600)
T 3hjr_A 233 ------------TGNGPKLPFENSN---LDPSNSNFWNLVVSA------------------------------------- 260 (600)
T ss_dssp ------------ESSCCCCCSSBTT---SSGGGGSSSEEEEEE-------------------------------------
T ss_pred ------------CCCCCCCCccccc---ccCccccCcceEEee-------------------------------------
Confidence 0000000000010 00 000000111100
Q ss_pred CcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcE-------
Q 039265 408 PHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSI------- 480 (708)
Q Consensus 408 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I------- 480 (708)
....+.++.||++|+.. +++|||.++
T Consensus 261 ---------------------------------------~~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~ 293 (600)
T 3hjr_A 261 ---------------------------------------LNADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAM 293 (600)
T ss_dssp ---------------------------------------ECTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCE
T ss_pred ---------------------------------------ecCCCCEeecccCCcce--------eeccCCCCCCCCCcce
Confidence 12345788999999987 899998763
Q ss_pred -EeeecCCC-----------------CCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccc
Q 039265 481 -LAAWFEPL-----------------DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 481 -~sa~~~~~-----------------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~ 542 (708)
.+..+... .........|..++|||||||||||++|||+|++|+|+++|||++|++||++++
T Consensus 294 vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d 373 (600)
T 3hjr_A 294 VTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVD 373 (600)
T ss_dssp EEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCS
T ss_pred eeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 22222211 011223356889999999999999999999999999999999999999999998
Q ss_pred cCCcccc--------------------ccCCCCCCCCccCCCCCCcCCCCCCcccc
Q 039265 543 MNGERIV--------------------DETLRPADIFAIGAGHVNPSRANDPGLVY 578 (708)
Q Consensus 543 ~~~~~~~--------------------~~~~~~~~~~~~G~G~vn~~~Al~~~l~~ 578 (708)
..+.|.. .+.........||||+||+.+||+.+..+
T Consensus 374 ~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~w 429 (600)
T 3hjr_A 374 AKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANH 429 (600)
T ss_dssp TTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTTC
T ss_pred CCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhcC
Confidence 7665421 11122224578999999999999755433
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=251.57 Aligned_cols=96 Identities=27% Similarity=0.441 Sum_probs=77.7
Q ss_pred eEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH---CCCcEEEEccCCCCCCC---CCCHHHHHHHHHHhcCceEE
Q 039265 203 AAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE---DGVDVLSISIGGGSVPF---FNDSIAVGSFAAIQKGIFVS 276 (708)
Q Consensus 203 ~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~---~g~dVIn~S~G~~~~~~---~~~~~~~a~~~a~~~Gv~vV 276 (708)
+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||.....+ +...+..++.+|..+||+||
T Consensus 274 ~~gvAp~a~i~~~~~~------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAP------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHCTTSEEEEEECC------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhccCCCCeEEEEEcC------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 4799999999999973 245689999999998 78999999999863221 23456677778889999999
Q ss_pred EecCCCCCCC--------CcccCCCCceEEEccccc
Q 039265 277 CAAGNSGPFN--------STISNEAPWILTVGASTL 304 (708)
Q Consensus 277 ~AAGN~g~~~--------~~~~~~~p~vitVga~~~ 304 (708)
+||||+|... ..+++.+|++++||+++.
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999643 456789999999999753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=215.71 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=80.5
Q ss_pred EEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEEccCCCCC----CCCCCHHHHHHHHHHhcCceEEEe
Q 039265 204 AGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-DGVDVLSISIGGGSV----PFFNDSIAVGSFAAIQKGIFVSCA 278 (708)
Q Consensus 204 ~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~----~~~~~~~~~a~~~a~~~Gv~vV~A 278 (708)
..+||+|+++.|++.+.. .+..++++.+|+||++ ++++|||||||.... ..+.+.+..++.+|..+||+||+|
T Consensus 90 g~~aP~a~~~~~~~~~~~--~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~A 167 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS--ASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVS 167 (372)
T ss_dssp HHTTSCEEEEEEEEECTT--SSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhcCCCCcEEEEEeCCCC--CcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 357899999999998654 4677889999999998 899999999997531 122346677777888999999999
Q ss_pred cCCCCCCCC-------------cccCCCCceEEEccccc
Q 039265 279 AGNSGPFNS-------------TISNEAPWILTVGASTL 304 (708)
Q Consensus 279 AGN~g~~~~-------------~~~~~~p~vitVga~~~ 304 (708)
|||+|...+ .+++.+|++++||+++.
T Consensus 168 sGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 168 SGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp CCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 999997542 45688999999999754
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-11 Score=104.00 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=67.5
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEecee
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERK 82 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~ 82 (708)
.++|||+||+...+..+ ..|.+|+++++.+. ..+.++.|+|++.|+||+++++++++++|+++|+|.+||+|+.
T Consensus 37 p~~YIV~lk~~~~~~~~--~~h~~~l~s~~~~~----~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~ 110 (114)
T 2w2n_P 37 PGTYVVVLKEETHLSQS--ERTARRLQAQAARR----GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 110 (114)
T ss_dssp EEEEEEEECTTCCHHHH--HHHHHHHHHHHHHT----TCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CCcEEEEECCCCCHHHH--HHHHHHHHHHhhhc----ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence 47899999998865555 68899999988763 3577999999999999999999999999999999999999998
Q ss_pred ecc
Q 039265 83 VRL 85 (708)
Q Consensus 83 ~~~ 85 (708)
++.
T Consensus 111 v~~ 113 (114)
T 2w2n_P 111 VFA 113 (114)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-10 Score=127.97 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=62.7
Q ss_pred EecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH--HCCCcEEEEccCCCCCC---CCCCHHHHHHHHHHhcCceEEEec
Q 039265 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAI--EDGVDVLSISIGGGSVP---FFNDSIAVGSFAAIQKGIFVSCAA 279 (708)
Q Consensus 205 GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~--~~g~dVIn~S~G~~~~~---~~~~~~~~a~~~a~~~Gv~vV~AA 279 (708)
+++++..++.|...... ...+.++..+++.. .+-++|||+|||..... .+...+...+.++..+||.|++|+
T Consensus 263 a~~~~i~~~~~~~~g~~---~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 263 SAGANISTWVYSSPGRH---EGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHSTTSEEEEECCCSCC---TTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCceEEEEecCCcc---cccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 44555565555332111 12233444444433 24589999999986322 223445566667889999999999
Q ss_pred CCCCCCC----------CcccCCCCceEEEccccc
Q 039265 280 GNSGPFN----------STISNEAPWILTVGASTL 304 (708)
Q Consensus 280 GN~g~~~----------~~~~~~~p~vitVga~~~ 304 (708)
||+|... ..+++.+|+|++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999753 256789999999999753
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-10 Score=91.01 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=58.2
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEecee
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERK 82 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~ 82 (708)
+++|||+||+......+ .++++++ .+.++.++|+. |+||++++++++++.|+++|+|.+||+++.
T Consensus 8 ~~~YIV~~k~~~~~~~~--------~~~~~~~------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~ 72 (80)
T 3cnq_P 8 EKKYIVGFKQGFKSCAK--------KEDVISE------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKL 72 (80)
T ss_dssp CCEEEEEECTTCCSHHH--------HHHHHHT------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred CCCEEEEECCCCChHHH--------HHHHHHH------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence 68999999998764221 1223332 36789999998 999999999999999999999999999999
Q ss_pred ecccccC
Q 039265 83 VRLQTTH 89 (708)
Q Consensus 83 ~~~~~~~ 89 (708)
++++++.
T Consensus 73 v~~~tt~ 79 (80)
T 3cnq_P 73 YRALSAT 79 (80)
T ss_dssp EEECCC-
T ss_pred EEEeeec
Confidence 9887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-09 Score=97.03 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=62.6
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEecee
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERK 82 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~ 82 (708)
+++|||+||+......+ ..+.+++.+++.++ ..+.++.|+|++.|+||++++++++++.|+++|+|.+|++++.
T Consensus 47 p~~YIV~~K~~~~~~~~--~~~~~~l~~~~~~r----~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~ 120 (124)
T 2qtw_A 47 PGTYVVVLKEETHLSQS--ERTARRLQAQAARR----GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 120 (124)
T ss_dssp EEEEEEEECTTCCHHHH--HHHHHHHHHHHHHT----TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CCCEEEEECCCCCHHHH--HHHHHHHHHHHhhc----ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence 57999999998865444 44555555544432 3467999999999999999999999999999999999999998
Q ss_pred ecc
Q 039265 83 VRL 85 (708)
Q Consensus 83 ~~~ 85 (708)
++.
T Consensus 121 v~a 123 (124)
T 2qtw_A 121 VFA 123 (124)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=79.93 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=55.9
Q ss_pred ceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEec-ceeEEEEEEcCHHHHHHHhcC--CCeEEEEec
Q 039265 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYK-NVISGFAAKLTEEEVQDMKKK--NGFVSARPE 80 (708)
Q Consensus 4 ~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~-~~~~g~sv~~~~~~i~~L~~~--~~V~~V~~~ 80 (708)
++|||.||+......+ ..+.+++ .+. +.++.+.|+ .+|+||+++++++.++.|+++ |.|.+||+|
T Consensus 3 ~sYIV~lk~~~~~~~~--~~~~~~~----~~~------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDKI--RETKDEV----IAE------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEEEECTTCCHHHH--HHHHHHH----HHH------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ceEEEEECCCCCHHHH--HHHHHHH----Hhh------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 7899999998764444 3344443 222 457899994 799999999999999999999 899999999
Q ss_pred eeecc
Q 039265 81 RKVRL 85 (708)
Q Consensus 81 ~~~~~ 85 (708)
+.++.
T Consensus 71 ~~v~~ 75 (76)
T 1v5i_B 71 HVAHA 75 (76)
T ss_dssp CEEEC
T ss_pred cEEeC
Confidence 98754
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.9e-08 Score=90.99 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=74.7
Q ss_pred CCCccCCCCCCCCc-------ccCcEEEeecCCC-cchhhHHHHHHHcCCcEEEEecCCCCCcc--ccc--CCcccceEE
Q 039265 348 ESAFCGNGSLSGID-------VKGKVVLCERGGG-IARIFKGEQVKNAGGAAMILMNDEPNAFS--VIA--DPHVLPATH 415 (708)
Q Consensus 348 ~~~~c~~~~~~~~~-------~~g~ivl~~~g~~-~~~~~k~~~~~~~ga~~~i~~~~~~~~~~--~~~--~~~~~p~~~ 415 (708)
....|.+....... .+++|+|++|| . |+|.+|..+++++||.++|+||+...+.. .+. ....||+++
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG-~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~ 160 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRG-GGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIM 160 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESC-TTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECC-CCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEE
Confidence 45789887654322 47899999999 8 99999999999999999999998533221 111 234699999
Q ss_pred EcHHHHHHHHHHHhcCCCceEEEEecc
Q 039265 416 VSNDAGLKIKSYINSTATPMATIIFKG 442 (708)
Q Consensus 416 i~~~~g~~l~~~~~~~~~~~~~i~~~~ 442 (708)
|+..+|+.|++++.++...+++|++..
T Consensus 161 Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 161 IGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp ECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 999999999999999988888777654
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-05 Score=61.21 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=51.5
Q ss_pred ceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEeceee
Q 039265 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERKV 83 (708)
Q Consensus 4 ~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~~ 83 (708)
-+|||.|++... . .+.+++ .+.++.++|. .+++++++++.+.++.|+++|+|.+||+|...
T Consensus 2 ~~~IV~f~~~~~---~---------~~~i~~------~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v 62 (65)
T 2z30_B 2 IRVIVSVDKAKF---N---------PHEVLG------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQA 62 (65)
T ss_dssp EEEEEEECGGGC---C---------GGGGGG------GTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEE
T ss_pred eeEEEEEcCcch---h---------HHHHHH------CCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEE
Confidence 589999987521 1 123443 3889999998 89999999999999999999999999999876
Q ss_pred cc
Q 039265 84 RL 85 (708)
Q Consensus 84 ~~ 85 (708)
+.
T Consensus 63 ~a 64 (65)
T 2z30_B 63 VL 64 (65)
T ss_dssp EE
T ss_pred Ec
Confidence 43
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.021 Score=61.77 Aligned_cols=72 Identities=22% Similarity=0.428 Sum_probs=58.3
Q ss_pred CCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc-ccc--CCcccceEEEcHHHHHHHHHHHh
Q 039265 357 LSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS-VIA--DPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 357 ~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~-~~~--~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
+...+++|||+|+.++ .|.+.+|..+++++||.++|++++...... ... ....+|...++.++++.|++++.
T Consensus 108 ~~~~dv~GkIvlv~~g-~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALIQRG-NISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEEECC-SSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEEeCC-CCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 3345799999999999 999999999999999999999988532111 111 34578999999999999999984
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.021 Score=50.19 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=54.3
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEE-cCceEEE
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWV-SAKYSVR 700 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~-~~~~~~~ 700 (708)
..+.++.|+|.|+.+..|++.. +.- .+|+|+..++.+ |+++.++|+|.+... +.+.+.|.+. ++...+.
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~--~~~--F~i~P~~g~L~p-g~~~~i~V~F~P~~~-----g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKT--CRP--FSIEPAIGTLNV-GESMQLEVEFEPQSV-----GDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEEC--CTT--EEEESSEEEECT-TCEEEEEEEECCSSS-----BCCCCBCEEEESSSCEEC
T ss_pred eEEEEEEEEECCCCCEEEEEec--CCC--eEEECCcCEECC-CCEEEEEEEEEcCCC-----ccEEEEEEEEECCCCEEE
Confidence 7888899999999888887665 333 567899999998 999999999999763 4567766665 4444444
Q ss_pred Ee
Q 039265 701 SP 702 (708)
Q Consensus 701 ~P 702 (708)
++
T Consensus 112 v~ 113 (122)
T 2ys4_A 112 VS 113 (122)
T ss_dssp CE
T ss_pred EE
Confidence 44
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.05 Score=59.24 Aligned_cols=102 Identities=10% Similarity=0.049 Sum_probs=70.1
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcc---------hhhH----HHHHHHcCCcEEEEecCCC
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIA---------RIFK----GEQVKNAGGAAMILMNDEP 399 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~---------~~~k----~~~~~~~ga~~~i~~~~~~ 399 (708)
..+-++++..+. ..|.. ..+.+++|||||+.++ .|. +..| ..++.++||+++|++++..
T Consensus 105 ~vta~lV~v~~~-----~~~~~--~~~~dvkGKIVlv~~~-~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~ 176 (444)
T 3iib_A 105 GLSATIVRFDTL-----QDLQN--AEAGSLNDKIAFIDAK-TERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGT 176 (444)
T ss_dssp CEEEEEEEESSH-----HHHHT--SCTTTTTTCEEEECCC-CCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCS
T ss_pred CeEEEEEecCCH-----HHHhh--ccccccCccEEEEeCC-CCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCC
Confidence 446778876521 22322 2356899999999988 663 3444 4578999999999998643
Q ss_pred CCc-------cc-ccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecc
Q 039265 400 NAF-------SV-IADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKG 442 (708)
Q Consensus 400 ~~~-------~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 442 (708)
... .. ......+|++.|+.++++.|++.+..+...++++....
T Consensus 177 ~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~ 227 (444)
T 3iib_A 177 DHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGS 227 (444)
T ss_dssp CCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEE
T ss_pred cccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEee
Confidence 321 11 11235799999999999999999987766666665443
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.027 Score=63.87 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=55.4
Q ss_pred CcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc-------------------cc---------------
Q 039265 360 IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS-------------------VI--------------- 405 (708)
Q Consensus 360 ~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~-------------------~~--------------- 405 (708)
.+++|||+|+.+| .|.+.+|..+++.+||+|+|+|++...... ..
T Consensus 128 vdv~GkIvlv~~g-~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~ 206 (640)
T 3kas_A 128 TPVNGSIVIVRAG-KITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 206 (640)
T ss_dssp SCCTTSEEEEESC-SSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSS
T ss_pred cccCCcEEEEecC-CCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCcccccccccccccc
Confidence 5799999999999 999999999999999999999987532100 00
Q ss_pred cCCcccceEEEcHHHHHHHHHHHh
Q 039265 406 ADPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 406 ~~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
.....||+..|+..+++.|++.+.
T Consensus 207 ~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 207 SGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cCCCCCCEEecCHHHHHHHHHHcc
Confidence 002368999999999999988764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=94.56 E-value=0.058 Score=61.82 Aligned_cols=71 Identities=24% Similarity=0.363 Sum_probs=56.3
Q ss_pred CCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCC----C------------------ccc----ccC-----
Q 039265 359 GIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPN----A------------------FSV----IAD----- 407 (708)
Q Consensus 359 ~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~----~------------------~~~----~~~----- 407 (708)
..+++|||+|+++| .|.+.+|..+++.+||+|+|+|++..+ + ... ..+
T Consensus 150 ~~~v~GkIvlv~~G-~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG 228 (707)
T 3fed_A 150 GINCTGKIVIARYG-KIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPG 228 (707)
T ss_dssp CCCCTTCEEEEECC-SSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTT
T ss_pred CCCCCCeEEEEECC-CCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCC
Confidence 45799999999999 899999999999999999999986210 0 000 001
Q ss_pred -----------------CcccceEEEcHHHHHHHHHHHhc
Q 039265 408 -----------------PHVLPATHVSNDAGLKIKSYINS 430 (708)
Q Consensus 408 -----------------~~~~p~~~i~~~~g~~l~~~~~~ 430 (708)
...||+..|+..+++.|+..+..
T Consensus 229 ~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 229 YPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp SCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 24689999999999999998764
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.98 E-value=2.3 Score=37.98 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=61.0
Q ss_pred CceEEEEEEEecCCCceeEEEEEeCC----CCeEEEeecCeEEEccCCcEEEEEEEEEecCC----CCCCCceEEEEEEE
Q 039265 621 PAQTFTRTVTNVGQVYSSYAVNVVAP----QGVVVSVKPSKLYFSKVNQKATYSVTFTRSGS----GYTSGQFAQGYITW 692 (708)
Q Consensus 621 ~~~~~~~tv~n~g~~~~ty~~~~~~~----~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~G~i~~ 692 (708)
..++.+++|+|.|..+.+|++..... ..--++|+|..-++.| |++++++|++..... ...+...++--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~P-ge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCC-CCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 36788889999999999999985321 1112456799999998 999999999986331 00001233555666
Q ss_pred E-cCceEEEEeEEEEeC
Q 039265 693 V-SAKYSVRSPISVRLQ 708 (708)
Q Consensus 693 ~-~~~~~~~~P~~~~~~ 708 (708)
. .++....+|+...|.
T Consensus 122 ~Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNYL 138 (140)
T ss_dssp EETTSCEEEEEEEEEEC
T ss_pred EeecCCcEEEEEecccc
Confidence 5 678888999988774
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=88.99 E-value=1.8 Score=37.33 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=46.1
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGS 678 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 678 (708)
.-.+++.|.|....+.+|++++...+++.+. .+..+++++ ++..++.|.+..+..
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~-g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEP-GEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECT-TCEEEEEEEEEECGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECC-CCEEEEEEEEEEChH
Confidence 6678889999999999999999987776654 356799988 999999999988664
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.49 E-value=0.26 Score=59.64 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=22.8
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCC
Q 039265 106 SNFGKGVIIGILDGGINPDHPSFS 129 (708)
Q Consensus 106 g~~G~Gv~VaVIDtGid~~Hp~f~ 129 (708)
.+.|+||+|||+|||||+.+|-|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 578999999999999999999997
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.72 E-value=0.73 Score=39.27 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=49.4
Q ss_pred ceEEEEEEEecCCCceeEEEEEeC-CCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEE
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVA-PQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWV 693 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~-~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~ 693 (708)
..+.+++++|.|+.+..|++.... +.+...+++|..-.+.+ |++++++|+|.+... +.+.=.|.+.
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~p-g~~~~i~V~f~~~~~-----g~f~~~i~v~ 93 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEP-SGVQAIQISFSSIIL-----GNFEEEFLVN 93 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECT-TBCCEEEEEECCCCC-----EEEEEEECEE
T ss_pred EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECC-CCEEEEEEEEECCCc-----ceEEEEEEEE
Confidence 678888999999999999883211 11234677899999998 999999999999642 3455556665
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=85.39 E-value=4.3 Score=39.15 Aligned_cols=78 Identities=10% Similarity=0.020 Sum_probs=55.1
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc----C-c
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS----A-K 696 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~----~-~ 696 (708)
..+.+++++|.|+.+.++++.+ .|..+.+. +..-.+.+ |++.+++|++++..... .+...+.|.+.. + .
T Consensus 20 ~~~~~~~i~N~g~~pl~i~~~~-~p~~~~~~--~~~~~I~P-G~~g~I~vt~~~~~~~~--~G~~~~~i~v~~~~~~~~~ 93 (220)
T 2qsv_A 20 EGVVRLVVNNTDESDLQVAVVS-LPSFVSLD--DRAFRLQA-REPRELNLSLAVPRNMP--PGMKDEPLVLEVTSPETGK 93 (220)
T ss_dssp CCEEEEEEEECSSSCEEEEEEE-CCTTEECS--CCEEEECS-SSCEEEEEEECCCTTCC--SEEEEEEEEEEEECTTTCC
T ss_pred cceEEEEEEeCCCCceEEEecc-CCCceEee--eCcceeCC-CCceEEEEEEcchhccc--CCceeeEEEEEEEcCCCCc
Confidence 6677889999999988888654 36665554 44455566 99999999999877644 367778788763 2 2
Q ss_pred -eEEEEeEEE
Q 039265 697 -YSVRSPISV 705 (708)
Q Consensus 697 -~~~~~P~~~ 705 (708)
...++|+..
T Consensus 94 ~~~~~i~v~g 103 (220)
T 2qsv_A 94 KAVDSVMVSL 103 (220)
T ss_dssp EEEEEEEEEE
T ss_pred ccccEEEEEE
Confidence 244666654
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=0.42 Score=51.79 Aligned_cols=30 Identities=27% Similarity=0.332 Sum_probs=26.0
Q ss_pred CCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecC
Q 039265 449 LAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFE 486 (708)
Q Consensus 449 ~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~ 486 (708)
..+.++.||++||.. ||+|||++|+++++.
T Consensus 182 ~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 182 SNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp TTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 356799999999865 999999999999874
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=81.05 E-value=8.1 Score=40.43 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=59.6
Q ss_pred CCCceEEEEEEEecCCCceeEEEEEeCCCCeE----EEeecCeEEEccCCcEEEEEEEEEecCCCC----CCCceEEEEE
Q 039265 619 LGPAQTFTRTVTNVGQVYSSYAVNVVAPQGVV----VSVKPSKLYFSKVNQKATYSVTFTRSGSGY----TSGQFAQGYI 690 (708)
Q Consensus 619 ~~~~~~~~~tv~n~g~~~~ty~~~~~~~~~~~----v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~G~i 690 (708)
|...++-++||+|+|..+.+|++.-....... ++|+|..-++.+ |++++++|++....... .+....+--|
T Consensus 44 ~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~P-ge~~~i~l~~~v~~~~~~~ln~g~~~l~diL 122 (366)
T 3qis_A 44 FRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEP-NETVDISLDVYVSKDSVTILNSGEDKIEDIL 122 (366)
T ss_dssp BTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECT-TCEEEEEEEECBCTTTHHHHHHTSSCSCEEE
T ss_pred eCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECC-CCEEEEEEEEEECHHHHHHHhcCccccceEE
Confidence 33478888899999999999999754322211 566899999998 99999999998766200 0012234445
Q ss_pred EEE-cCceEEEEeEEEEe
Q 039265 691 TWV-SAKYSVRSPISVRL 707 (708)
Q Consensus 691 ~~~-~~~~~~~~P~~~~~ 707 (708)
++. .++....+|+-..|
T Consensus 123 vL~ve~G~d~FI~v~~~~ 140 (366)
T 3qis_A 123 VLHLDRGKDYFLTISGNY 140 (366)
T ss_dssp EEEETTSCEEEEEEEEEE
T ss_pred EEEEeCCCcEEEEecccc
Confidence 554 56666677776665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 708 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 4e-47 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-13 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 4e-11 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 5e-13 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 9e-07 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 4e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-09 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 5e-12 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 7e-06 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 6e-12 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-05 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 7e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 3e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 2e-10 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 2e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 6e-08 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 1e-08 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-07 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 5e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 0.002 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 8e-08 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 3e-05 | |
| d3bi1a2 | 233 | c.8.4.1 (A:118-350) Glutamate carboxypeptidase II | 0.003 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 171 bits (432), Expect = 4e-47
Identities = 81/475 (17%), Positives = 146/475 (30%), Gaps = 79/475 (16%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
I I+D G + H N + + GN
Sbjct: 21 AGNRTICIIDSGYDRSHNDL---------------------NANNVTGTNNSGTGN---W 56
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
P + + HGTHVAGT A N +G G+ P + I+ V + S
Sbjct: 57 YQPGNNNAHGTHVAGTIAAI--------ANNEGVV-GVMPNQNANIHIVKVFNEAGWGYS 107
Query: 229 DLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST 288
L + +++ G + + + AAGN+G + +
Sbjct: 108 SSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTHYNNGVLLI-AAAGNAGDSSYS 166
Query: 289 ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPE 348
+++V A + A ++ ++ E G L + G+
Sbjct: 167 YPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSY 226
Query: 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADP 408
+ +G+ ++ G + G A +N
Sbjct: 227 FS-------NGVVPHNRLTP----SGTSYAPAPINASATGALAECTVNGTS--------- 266
Query: 409 HVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGI 468
+ + + + + + + I +V +S P L +P +
Sbjct: 267 ----FSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFL 322
Query: 469 L--KPDIIGPGLSILAAWFEPL--------DFNTNPKSIFNIMSGTSMACPHLSGIAALL 518
+ DI P +S+ A L + + +GTSMA PH+SG+A L+
Sbjct: 323 VDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLV 382
Query: 519 KSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573
S HP S + +++AL TAD L++ G G +N A
Sbjct: 383 WSYHPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAKA 426
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 68.8 bits (167), Expect = 3e-13
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 44/218 (20%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
+ + G V + ++D GI+ HP K G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDL----------KVAGGASMVPSE----------- 54
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
T P D + HGTHVAGT A N G+AP A L KV G
Sbjct: 55 ------TNPFQDNNSHGTHVAGTVAA---------LNNSIGVLGVAPSASLYAVKV-LGA 98
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281
D S ++ G++ AI + +DV+++S+GG P + ++ A+ G+ V AAGN
Sbjct: 99 DGSGQYSWIINGIEWAIANNMDVINMSLGG---PSGSAALKAAVDKAVASGVVVVAAAGN 155
Query: 282 SGPFNSTIS----NEAPWILTVGASTLDRSIVATAKLG 315
G S+ + + P ++ VGA + + +G
Sbjct: 156 EGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVG 193
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 61.8 bits (149), Expect = 4e-11
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 14/82 (17%)
Query: 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIV 549
+T P + + +GTSMA PH++G AAL+ S HP W+ ++S+L T L
Sbjct: 206 QSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------- 258
Query: 550 DETLRPADIFAIGAGHVNPSRA 571
D F G G +N A
Sbjct: 259 -------DSFYYGKGLINVQAA 273
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 67.7 bits (164), Expect = 5e-13
Identities = 47/202 (23%), Positives = 73/202 (36%), Gaps = 38/202 (18%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
W + G I ++D G++ HP K DF +
Sbjct: 23 AWDVTKGSSGQEIAVIDTGVDYTHPDLDG--------KVIKGYDFVDNDY---------- 64
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
P+D++ HGTHVAG AA N AGMAP + +
Sbjct: 65 --------DPMDLNNHGTHVAGIAAAET--------NNATGIAGMAPNTRILAVRA-LDR 107
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281
+ T SD+ + A + G +V+++S+G ++ A KG V AAGN
Sbjct: 108 NGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENA---VNYAWNKGSVVVAAAGN 164
Query: 282 SGPFNSTISNEAPWILTVGAST 303
+G + ++ VGA
Sbjct: 165 NGSSTTFEPASYENVIAVGAVD 186
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 48.8 bits (115), Expect = 9e-07
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPAD 557
+ MSGTSMA PH++G+AALL S + I+ A+ TAD ++ G
Sbjct: 219 YAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGTY---------- 266
Query: 558 IFAIGAGHVNPSRA 571
G +N A
Sbjct: 267 ---FKYGRINSYNA 277
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 65.0 bits (157), Expect = 4e-12
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 475 GPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSAL 534
G GL I+A +T P S + ++GTSMA PH++G AAL+K +P WS I++ L
Sbjct: 187 GAGLDIVAPGVNV--QSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 535 MTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
TA L +++ G+G VN A
Sbjct: 245 KNTATSLG------------STNLY--GSGLVNAEAA 267
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 57.2 bits (137), Expect = 2e-09
Identities = 59/244 (24%), Positives = 92/244 (37%), Gaps = 46/244 (18%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
G GV + +LD GI+ HP +G F
Sbjct: 16 AHNRGLTGSGVKVAVLDTGIS-THPDL----------NIRGGASF--------------- 49
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
V G D +GHGTHVAGT A N G+AP A L KV G
Sbjct: 50 ---VPGEPSTQDGNGHGTHVAGTIAA---------LNNSIGVLGVAPSAELYAVKV-LGA 96
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281
+ S + GL+ A +G+ V ++S P + ++ +A +G+ V A+GN
Sbjct: 97 SGSGSVSSIAQGLEWAGNNGMHVANLS---LGSPSPSATLEQAVNSATSRGVLVVAASGN 153
Query: 282 SGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYA 341
SG + + + VGA+ + + + ++ G + V +P + YA
Sbjct: 154 SGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST----YA 209
Query: 342 GMNG 345
+NG
Sbjct: 210 SLNG 213
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.6 bits (158), Expect = 5e-12
Identities = 12/88 (13%), Positives = 33/88 (37%)
Query: 484 WFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNM 543
+ + + +GTS + P +GI AL ++ + ++ ++ T+ ++
Sbjct: 239 NEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHL 298
Query: 544 NGERIVDETLRPADIFAIGAGHVNPSRA 571
N + + + G G ++
Sbjct: 299 NADDWATNGVGRKVSHSYGYGLLDAGAM 326
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 23/195 (11%), Positives = 48/195 (24%), Gaps = 21/195 (10%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
W + G G+++ ILD GI +HP + +F+
Sbjct: 28 EAWAQGFTGHGIVVSILDDGIEKNHPDLAG---------------------NYDPGASFD 66
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
+ +P H A + + +V
Sbjct: 67 VNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLDGEVTDA 126
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAG 280
+ + + G + ++ G + S G A+G
Sbjct: 127 VEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASG 186
Query: 281 NSGPFNSTISNEAPW 295
N G + + + +
Sbjct: 187 NGGREHDSCNCDGYT 201
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 64.9 bits (156), Expect = 6e-12
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 470 KPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAA 529
+I PG S+ + W +N +SGTSMA PH+SG+AA + + +P S
Sbjct: 224 DIEISAPGSSVYSTW---------YNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQ 274
Query: 530 IKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567
++S L A +++ G D +A G G
Sbjct: 275 LRSNLQERAKSVDIKGG----YGAAIGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSD 130
+ G G+ I +LD G+N HP +
Sbjct: 18 TLTSTTGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 66.2 bits (160), Expect = 7e-12
Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 39/220 (17%)
Query: 103 WKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIE 162
E G +I+ ++D G++ HP + + +
Sbjct: 147 LWEEASGTNIIVAVVDTGVDGTHPDLEGQVIA---------------------GYRPAFD 185
Query: 163 GNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVC---- 218
+ GTHVAGT A G+AP A + +
Sbjct: 186 EELPAGTDSSYGGSAGTHVAGTIAAKK---------DGKGIVGVAPGAKIMPIVIFDDPA 236
Query: 219 -FGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSC 277
GG+ + + AG+ A + G V++ S GG ++ ++ A++ G+ +
Sbjct: 237 LVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG---WGYSYTMKEAFDYAMEHGVVMVV 293
Query: 278 AAGNSGPFNSTIS-NEAPWILTVGASTLDRSIVATAKLGN 316
+AGN+ + P ++ V A A +
Sbjct: 294 SAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSS 333
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 65.8 bits (159), Expect = 1e-11
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 471 PDIIGPGLSILAAW---------FEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS 521
+ PG++IL+ + ++ GTSMA PH++G+ A+L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 522 HPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
P P I+ L TA N NG G G V A
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYGLVKLDAA 436
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 62.3 bits (150), Expect = 3e-11
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 23/102 (22%)
Query: 470 KPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAA 529
+ +++ PG ++T P + + ++GTSMA PH++G AAL+ S HP S +
Sbjct: 194 ELEVMAPGAG---------VYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQ 244
Query: 530 IKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
+++ L +TA L + F G G +N A
Sbjct: 245 VRNRLSSTATYLGSS--------------FYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 60.7 bits (146), Expect = 1e-10
Identities = 60/280 (21%), Positives = 101/280 (36%), Gaps = 59/280 (21%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI 161
V + G V + +LD GI HP ++G +F
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDL-----------------------NVVGGASF-- 50
Query: 162 EGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGG 221
V G D +GHGTHVAGT A P L KV
Sbjct: 51 ---VAGEAYNTDGNGHGTHVAGTVAALDNTTGVLGVA---------PSVSLYAVKV-LNS 97
Query: 222 DVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGN 281
+ S +++G++ A +G+DV+++S+ + ++ A +G+ V AAGN
Sbjct: 98 SGSGSYSGIVSGIEWATTNGMDVINMSL---GGASGSTAMKQAVDNAYARGVVVVAAAGN 154
Query: 282 SGPFNSTISNEAPW----ILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLP 337
SG ST + P ++ VGA + + + + +G E +P
Sbjct: 155 SGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTN--- 211
Query: 338 LVYAGMNGKPESA----------FCGNGSLSGIDVKGKVV 367
YA +NG ++ + +LS V+ ++
Sbjct: 212 -TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLS 250
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 465 SPGILKPDIIGPGLSILAAW---FEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS 521
G +KPD++ PG IL+A F N S + M GTSMA P ++G A L+
Sbjct: 212 KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREH 271
Query: 522 HPY-----WSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
P+ +K+AL+ A + + G G V ++
Sbjct: 272 FVKNRGITPKPSLLKAALIAGAADIGLGYPN-----------GNQGWGRVTLDKS 315
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 38/195 (19%), Positives = 58/195 (29%), Gaps = 32/195 (16%)
Query: 102 VWKESNF-GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
G+G I+ + D G++ S ++G+
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSM------HEAFRGKITAL------------- 53
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
+ T D +GHGTHVAG+ G KG A + G
Sbjct: 54 --YALGRTNNANDTNGHGTHVAGSVLGNG-------STNKGMAPQANLVFQSIM---DSG 101
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAG 280
G + S+L A G + + S G + + + + AAG
Sbjct: 102 GGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAG 161
Query: 281 NSGPFNSTISNEAPW 295
N GP TIS
Sbjct: 162 NEGPNGGTISAPGTA 176
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 484 WFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNM 543
E + + N GTS A P +G+ LL ++P + ++ + +A L
Sbjct: 243 SGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEK 302
Query: 544 NGE-RIVDETLRPADIFAIGAGHVNPSRA 571
N + D + G G ++ +
Sbjct: 303 NADGDWRDSAMGKKYSHRYGFGKIDAHKL 331
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 6e-08
Identities = 35/204 (17%), Positives = 60/204 (29%), Gaps = 42/204 (20%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
+W + G GV+ I+D G++ ++ D +++
Sbjct: 37 DLWYNNITGAGVVAAIVDDGLDYENEDLKD---------------------NFCAEGSWD 75
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
N +P + D HGT AG A G+ A ++ ++
Sbjct: 76 FNDNTNLPKPRLSDDYHGTRCAGEIAAK--------KGNNFCGVGVGYNAKISGIRILS- 126
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDS---------IAVGSFAAIQK 271
D T D A L + D D+ S S G + + K
Sbjct: 127 --GDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSK 183
Query: 272 GIFVSCAAGNSGPFNSTISNEAPW 295
G A+GN G + +
Sbjct: 184 GAIYVFASGNGGTRGDNCNYDGYT 207
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 54.7 bits (130), Expect = 1e-08
Identities = 42/233 (18%), Positives = 70/233 (30%), Gaps = 39/233 (16%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
W + G G I I+D G+ +HP + K++G F
Sbjct: 22 QAWDIAE-GSGAKIAIVDTGVQSNHPDLAG---------------------KVVGGWDFV 59
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
+ G A N AG AP A + +V
Sbjct: 60 DNDSTPQNGNGHGTHCAGIAAAV-------------TNNSTGIAGTAPKASILAVRVLDN 106
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAG 280
T + + G+ A + G V+S+S+GG A KG V AAG
Sbjct: 107 SG-SGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQA---VNYAWNKGSVVVAAAG 162
Query: 281 NSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333
N+G + V ++ + + + + G+ + +P
Sbjct: 163 NAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAPGSSIYSTYPT 215
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 50.5 bits (119), Expect = 3e-07
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 475 GPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSAL 534
G + + A ++T P S + +SGTSMA PH++G+A LL S S + I++A+
Sbjct: 197 GSWVDVAAPGSSI--YSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAI 252
Query: 535 MTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571
TAD ++ G G VN +A
Sbjct: 253 ENTADKISGTGTY-------------WAKGRVNAYKA 276
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.8 bits (125), Expect = 5e-08
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPAD 557
+SGTSMA PH++G+AA L + + +A + + TA+ D
Sbjct: 217 TRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTAN---------------KGD 260
Query: 558 IFAIGAGHVN 567
+ I G VN
Sbjct: 261 LSNIPFGTVN 270
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 38.2 bits (87), Expect = 0.002
Identities = 39/221 (17%), Positives = 64/221 (28%), Gaps = 42/221 (19%)
Query: 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFN 160
+ + + G+G + ++D GI HP F +GR
Sbjct: 22 TYYYDESAGQGSCVYVIDTGIEASHPEF------------EGRAQMVKTYY--------- 60
Query: 161 IEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG 220
D +GHGTH AGT A + + G
Sbjct: 61 --------YSSRDGNGHGTHCAGTVGSRTYGV----------AKKTQLFGVKVLDDNGSG 102
Query: 221 GDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAG 280
D + + S+ G + + A + G+ V+ AAG
Sbjct: 103 QYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAARLQS--SGVMVAVAAG 160
Query: 281 NSGPFNSTISNE-APWILTVGASTLDRSIVATAKLGNREEF 320
N+ S P + TVGAS + + G+ +
Sbjct: 161 NNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDI 201
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 52.4 bits (124), Expect = 8e-08
Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 37/181 (20%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G+G I I+ G D S + F G
Sbjct: 23 GQGQCIAIIALGGGYDETSLAQ---------------------------YFASLGVSAPQ 55
Query: 169 EPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
+ VDG G G + A +AP A +A+Y D
Sbjct: 56 VVSVSVDGATNQPTGDPNG----PDGEVELDIEVAGALAPGAKIAVYFAPN---TDAGFL 108
Query: 229 DLLAGLDAAIEDGVDVLSISIGGGSVPF---FNDSIAVGSFAAIQKGIFVSCAAGNSGPF 285
+ + ++SIS GG + ++ A G+ V AAG+SG
Sbjct: 109 NAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGST 168
Query: 286 N 286
+
Sbjct: 169 D 169
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 21/193 (10%), Positives = 43/193 (22%), Gaps = 47/193 (24%)
Query: 109 GKGVIIGILDGGINPDHPS-----FSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEG 163
+GI+ G S G+
Sbjct: 24 AANTTVGIITIGGVSQTLQDLQQFTSANGLASV--------------------------- 56
Query: 164 NVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV 223
N + + + G + G A A +
Sbjct: 57 NTQTIQTGSSNGDYSDDQQGQGEWD---------LDSQSIVGSAGGAVQQLLFY-MADQS 106
Query: 224 DCTESDLLAGLDAAIED-GVDVLSISIG----GGSVPFFNDSIAVGSFAAIQKGIFVSCA 278
+ L + A+ D V+++S+G + + A +G S +
Sbjct: 107 ASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVS 166
Query: 279 AGNSGPFNSTISN 291
+G+ G +
Sbjct: 167 SGDEGVYECNNRG 179
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (87), Expect = 0.003
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 337 PLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMN 396
LVY + E F + I+ GK+V+ R G + R K + + AG +IL +
Sbjct: 56 DLVYVN-YARTEDFFKLERDM-KINCSGKIVIA-RYGKVFRGNKVKNAQLAGAKGVILYS 112
Query: 397 DEPNAFSVIADPH 409
D + F+ +
Sbjct: 113 DPADYFAPGVKSY 125
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 708 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.92 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.72 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.68 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.38 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.55 | |
| d1grwa_ | 124 | Major sperm protein, MSP {Nematode (Caenorhabditis | 81.24 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=8.4e-55 Score=501.32 Aligned_cols=361 Identities=23% Similarity=0.263 Sum_probs=265.0
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHH----HHH--HhcCCCeEE
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEE----VQD--MKKKNGFVS 76 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~----i~~--L~~~~~V~~ 76 (708)
+++|||.||+... . ++++++. +.++++++. .++.+.++++... .+. +..+|+|++
T Consensus 31 ~~~~iV~~k~~~~--------~----~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 91 (671)
T d1r6va_ 31 EGKILVGYNDRSE--------V----DKIVKAV------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRY 91 (671)
T ss_dssp TTEEEEEESSHHH--------H----HHHHHHH------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEE
T ss_pred CCeEEEEECCccC--------H----HHHHHhc------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceE
Confidence 5799999997432 1 2223322 455667766 4566777775432 222 235799999
Q ss_pred EEeceeeccccc---------------------------CCCccccccc--CCcccccCCCCCccEEEEEcCCCCCCCCC
Q 039265 77 ARPERKVRLQTT---------------------------HSPSFLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPS 127 (708)
Q Consensus 77 V~~~~~~~~~~~---------------------------~s~~~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~ 127 (708)
|||+...++... .....|+++. +.+.|.+..+|+||+|||||||||++||+
T Consensus 92 vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpd 171 (671)
T d1r6va_ 92 VEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPD 171 (671)
T ss_dssp EECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGG
T ss_pred ECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChh
Confidence 999865443210 0011255543 23344445699999999999999999999
Q ss_pred CCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEec
Q 039265 128 FSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMA 207 (708)
Q Consensus 128 f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvA 207 (708)
|.++ ++..+++..+.+.+...++.|..||||||||||||... +.+ +.|||
T Consensus 172 l~~~---------------------~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAGiiaa~~~--------~~g-~~GvA 221 (671)
T d1r6va_ 172 LEGQ---------------------VIAGYRPAFDEELPAGTDSSYGGSAGTHVAGTIAAKKD--------GKG-IVGVA 221 (671)
T ss_dssp GTTT---------------------BCCEEEGGGTEEECTTCBCCTTCSHHHHHHHHHHCCCS--------SSS-CCCSC
T ss_pred hcCC---------------------cccCccccccCCCCCCCcCcccCCCCccccceeeeecc--------ccc-eeeec
Confidence 9864 12223333221111134567788999999999999742 222 37999
Q ss_pred CCCEEEEEEeeeCC----CCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCC
Q 039265 208 PYAHLAIYKVCFGG----DVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNS 282 (708)
Q Consensus 208 P~A~l~~~kv~~~~----~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~ 282 (708)
|+|+|+++|++++. ..+ .....+++||+||+++|++|||||||+.. ....+..++..+.++|+++|+||||+
T Consensus 222 p~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~a~~~gv~vV~aAGN~ 298 (671)
T d1r6va_ 222 PGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDYAMEHGVVMVVSAGNN 298 (671)
T ss_dssp TTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred CcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---CChHHHHHHHHHHhccCcEEEEEecC
Confidence 99999999999642 013 56778999999999999999999999753 34567778888999999999999999
Q ss_pred CCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCc
Q 039265 283 GPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGID 361 (708)
Q Consensus 283 g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 361 (708)
+.+. ..+++..|++|+|||.+...
T Consensus 299 ~~~~~~~~Pa~~~~vi~Vga~~~~~------------------------------------------------------- 323 (671)
T d1r6va_ 299 TSDSHHQYPAGYPGVIQVAALDYYG------------------------------------------------------- 323 (671)
T ss_dssp SSSCCCCBTTTSTTCEEEEEEEEET-------------------------------------------------------
T ss_pred CCCccccCCccCCceEEEEEecCCC-------------------------------------------------------
Confidence 8764 56788999999999963111
Q ss_pred ccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEec
Q 039265 362 VKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFK 441 (708)
Q Consensus 362 ~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~ 441 (708)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCC---------CCCCCCCcceeeccchhhhHHHHH
Q 039265 442 GTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPL---------DFNTNPKSIFNIMSGTSMACPHLS 512 (708)
Q Consensus 442 ~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~---------~~~~~~~~~y~~~sGTSmAaP~VA 512 (708)
....++.||+|||.. ||+|||++|+|+++... .......+.|..++||||||||||
T Consensus 324 -------~~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~Va 388 (671)
T d1r6va_ 324 -------GTFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVT 388 (671)
T ss_dssp -------TEEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHH
T ss_pred -------CcceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHH
Confidence 011578999999976 99999999999987543 111223478999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCCCcc
Q 039265 513 GIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRANDPGL 576 (708)
Q Consensus 513 G~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 576 (708)
|++|||+|++|+|++.|||++|++||+++... ..+..||||+||+.+||+..+
T Consensus 389 G~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G~vna~~Av~~~~ 441 (671)
T d1r6va_ 389 GVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPL 441 (671)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS-----------SCBTTTBTCBCCHHHHHHCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcccChhCHHHHhhCcC
Confidence 99999999999999999999999999987432 356799999999999998554
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=6.9e-50 Score=413.85 Aligned_cols=264 Identities=29% Similarity=0.409 Sum_probs=215.0
Q ss_pred ccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC
Q 039265 94 LGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 94 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
|+++. ++.+|+++++|+||+|||||||||++||+|.++ ++..++|... ...+
T Consensus 13 w~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------~~~~~~~~~~-----~~~~ 66 (280)
T d1dbia_ 13 YGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------VIKGYDFVDN-----DYDP 66 (280)
T ss_dssp CTTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------EEEEEETTTT-----BSCC
T ss_pred cChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------eeecccccCC-----CCcc
Confidence 45544 466999999999999999999999999999753 4455566543 3456
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++.. + +...++++||+|++++|++|||||||
T Consensus 67 ~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~--~~~~~~~~~~ai~~a~~~g~~iin~S~g 136 (280)
T d1dbia_ 67 MDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRN--GSGTLSDIADAIIYAADSGAEVINLSLG 136 (280)
T ss_dssp CCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTT--SCCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCC--CCcCHHHHHHHHHHHHHcCCcEeecccc
Confidence 78999999999999987532 2335899999999999999876 4 78899999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 251 GGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
... .......+...+.++|+++|+||||+|.....+++..+++|+||+.+
T Consensus 137 ~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~--------------------------- 186 (280)
T d1dbia_ 137 CDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD--------------------------- 186 (280)
T ss_dssp SCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEEC---------------------------
T ss_pred ccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeec---------------------------
Confidence 763 23455566678899999999999999988888889999999999852
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
T Consensus 187 -------------------------------------------------------------------------------- 186 (280)
T d1dbia_ 187 -------------------------------------------------------------------------------- 186 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCC
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDF 490 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~ 490 (708)
..+.++.||++||.. |++|||.+|++....
T Consensus 187 --------------------------------------~~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~---- 216 (280)
T d1dbia_ 187 --------------------------------------QYDRLASFSNYGTWV--------DVVAPGVDIVSTITG---- 216 (280)
T ss_dssp --------------------------------------TTSCBCTTBCCSTTC--------CEEEECSSEEEEETT----
T ss_pred --------------------------------------CCCCcCCcCCCCCcc--------cccCCccceeccccC----
Confidence 122678999999876 999999999999876
Q ss_pred CCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCC
Q 039265 491 NTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSR 570 (708)
Q Consensus 491 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~ 570 (708)
..|..++|||||||+|||++|||+|. .+++.+||++|++||+++.. +...||+|+||+++
T Consensus 217 -----~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------------~~~~~G~G~ln~~~ 276 (280)
T d1dbia_ 217 -----NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------------TGTYFKYGRINSYN 276 (280)
T ss_dssp -----TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-------------BTTTBSSEECCHHH
T ss_pred -----cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-------------CCCcCCCCeEcHHH
Confidence 78999999999999999999999995 55899999999999987632 34689999999999
Q ss_pred CCC
Q 039265 571 AND 573 (708)
Q Consensus 571 Al~ 573 (708)
||+
T Consensus 277 Al~ 279 (280)
T d1dbia_ 277 AVT 279 (280)
T ss_dssp HHT
T ss_pred HcC
Confidence 985
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.1e-49 Score=438.98 Aligned_cols=369 Identities=25% Similarity=0.306 Sum_probs=238.0
Q ss_pred cccccC--CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC
Q 039265 94 LGLHQG--MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 94 ~g~~~~--~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
||+..+ ..+|. .+|+||+|||||||||++||+|.++ ++..+++....+ ...+
T Consensus 6 wg~~~i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------~~~~~~~~~~~~---~~~~ 59 (435)
T d1v6ca_ 6 WGQTFVGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------NVTGTNNSGTGN---WYQP 59 (435)
T ss_dssp HHHHHTTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------EEEECCCTTSCC---TTCC
T ss_pred ccHhhcCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------eeeeeccCCCCC---CCCC
Confidence 555543 33554 5899999999999999999999753 333334432211 3457
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecC--CCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHH-CCCcEEEE
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAP--YAHLAIYKVCFGGDVD-CTESDLLAGLDAAIE-DGVDVLSI 247 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP--~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~-~g~dVIn~ 247 (708)
.|++||||||||||||+.. +.+ +.|||| +++|+.+|++... . +...++++||+++++ ++++|||+
T Consensus 60 ~d~~gHGThvAgiiag~~~--------~~g-~~GvAp~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~vin~ 128 (435)
T d1v6ca_ 60 GNNNAHGTHVAGTIAAIAN--------NEG-VVGVMPNQNANIHIVKVFNEA--GWGYSSSLVAAIDTCVNSGGANVVTM 128 (435)
T ss_dssp CSSCCHHHHHHHHHHCCCS--------SSB-CCCSSCSSCSEEEEEECEETT--EECCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCcHHHHHHHHhccCC--------CCc-eEEEecccCceeeeeeccccc--ccchhhhhhhHHHHHhhcccceEEec
Confidence 7899999999999999742 122 479999 8999999999876 4 666779999999986 59999999
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEE--------EE-------
Q 039265 248 SIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVA--------TA------- 312 (708)
Q Consensus 248 S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~--------~~------- 312 (708)
|||... ....+..++.++.++|+++|+||||+|....++++..+++|+||+++.+..... .+
T Consensus 129 S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i 205 (435)
T d1v6ca_ 129 SLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAI 205 (435)
T ss_dssp CCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSE
T ss_pred ccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccce
Confidence 999864 234566777788999999999999999999999999999999999866543211 00
Q ss_pred --EcCCCceeee-eeccCCCCCCCCceeE--EEecCCC------CC----CCCcc--CCCCCCCCcccCcEEEeecCC--
Q 039265 313 --KLGNREEFDG-ESVFQPKDFPQTPLPL--VYAGMNG------KP----ESAFC--GNGSLSGIDVKGKVVLCERGG-- 373 (708)
Q Consensus 313 --~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~------~~----~~~~c--~~~~~~~~~~~g~ivl~~~g~-- 373 (708)
++..+..... ........+.....+. +...... .. ....| ........++.+++.++.+..
T Consensus 206 ~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (435)
T d1v6ca_ 206 LSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQ 285 (435)
T ss_dssp EEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCS
T ss_pred eeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCc
Confidence 0111110000 0000000000000000 0000000 00 00000 001122334556666665541
Q ss_pred --CcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCC
Q 039265 374 --GIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAP 451 (708)
Q Consensus 374 --~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 451 (708)
......+.......++.+++.+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------ 311 (435)
T d1v6ca_ 286 GSSYPEINSTKACKTAGAKGIIVYSN------------------------------------------------------ 311 (435)
T ss_dssp SSSCTHHHHHHHHHHTTCSEEEEECC------------------------------------------------------
T ss_pred cccceeeeeceeecccCCcceEEecc------------------------------------------------------
Confidence 223344445555555555554433
Q ss_pred ccccccCCCCCCC--CCCCcCCceeeCCCcEEeeecCCC--------CCCCCCCcceeeccchhhhHHHHHHHHHHHHhc
Q 039265 452 TVVSFSSRGPNLA--SPGILKPDIIGPGLSILAAWFEPL--------DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS 521 (708)
Q Consensus 452 ~~a~fSs~Gp~~~--~~g~~KPDI~APG~~I~sa~~~~~--------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 521 (708)
+.+|... ..+..||||.+||..|.++..... .........|..+||||||||||||++|||+|+
T Consensus 312 ------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 385 (435)
T d1v6ca_ 312 ------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSY 385 (435)
T ss_dssp ------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHH
Confidence 2222221 124678999999988764421100 000011267999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 522 HPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 522 ~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
||+|+++|||++||+||+++.. ++++++||+|+||+.+|++
T Consensus 386 ~P~~s~~~vk~~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 386 HPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp CTTSCHHHHHHHHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH
T ss_pred CCCCCHHHHHHHHHhhCcccCC-----------CCCCCCcccceecHHHHHH
Confidence 9999999999999999998732 3567899999999999974
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.1e-49 Score=411.49 Aligned_cols=262 Identities=32% Similarity=0.493 Sum_probs=218.9
Q ss_pred ccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC
Q 039265 94 LGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 94 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
|||+. ++.+|.++++|+||+|||||||||++||+|+ +...++|..+ ...+
T Consensus 6 wgl~~i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------~~~~~~~~~~-----~~~~ 57 (274)
T d1r0re_ 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------VVGGASFVAG-----EAYN 57 (274)
T ss_dssp THHHHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------EEEEEECSTT-----CCTT
T ss_pred cchhhcChHHHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------ccCCccccCC-----CCCC
Confidence 55543 4569999999999999999999999999995 3345566654 3456
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.|.++|||||||||++.... .+ +.|+||+|+|+.+|+++.. + +..++++++++++.+++++|+|+|||
T Consensus 58 ~d~~gHGT~vAgii~~~~~~--------~~-~~gvap~a~i~~~~~~~~~--~~~~~~~i~~ai~~a~~~~~~i~n~S~~ 126 (274)
T d1r0re_ 58 TDGNGHGTHVAGTVAALDNT--------TG-VLGVAPSVSLYAVKVLNSS--GSGSYSGIVSGIEWATTNGMDVINMSLG 126 (274)
T ss_dssp CCSSSHHHHHHHHHHCCSSS--------SB-CCCSSTTSEEEEEECSCTT--SEECHHHHHHHHHHHHHTTCSEEEECEE
T ss_pred CCcccccccccccccccccc--------cc-ccccCCCcEEEEEEEeCCC--CCcCHHHHHHHHHHHHhcCCceeccccc
Confidence 68899999999999987421 22 3799999999999999876 5 67889999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCC----CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 251 GGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN----STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
.... .........++.++++++|+||||+|... ..+++..+++|+|||.+.
T Consensus 127 ~~~~---~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~---------------------- 181 (274)
T d1r0re_ 127 GASG---STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS---------------------- 181 (274)
T ss_dssp BSSC---CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT----------------------
T ss_pred cccc---hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC----------------------
Confidence 7632 23445556688899999999999998653 344677889999998521
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecC
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFE 486 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~ 486 (708)
.+.++.||++||. |||+|||++|+++.+.
T Consensus 182 -------------------------------------------~~~~~~~s~~g~~--------~di~APG~~i~~~~~~ 210 (274)
T d1r0re_ 182 -------------------------------------------NSNRASFSSVGAE--------LEVMAPGAGVYSTYPT 210 (274)
T ss_dssp -------------------------------------------TSCBCTTCCCSTT--------EEEEEECSSEEEEETT
T ss_pred -------------------------------------------CCCcccccCCCCC--------EEEEecCCCcccccCC
Confidence 1267889999985 4999999999999876
Q ss_pred CCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCC
Q 039265 487 PLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHV 566 (708)
Q Consensus 487 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~v 566 (708)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++. ++..||+|+|
T Consensus 211 ---------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~l 267 (274)
T d1r0re_ 211 ---------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------------SSFYYGKGLI 267 (274)
T ss_dssp ---------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS--------------CHHHHTTCBC
T ss_pred ---------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCceEcCee
Confidence 78999999999999999999999999999999999999999998763 3468999999
Q ss_pred CcCCCCC
Q 039265 567 NPSRAND 573 (708)
Q Consensus 567 n~~~Al~ 573 (708)
|+.+||+
T Consensus 268 n~~~A~~ 274 (274)
T d1r0re_ 268 NVEAAAQ 274 (274)
T ss_dssp CHHHHTC
T ss_pred cHHHhcC
Confidence 9999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=5.3e-49 Score=407.62 Aligned_cols=263 Identities=31% Similarity=0.447 Sum_probs=223.9
Q ss_pred ccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC
Q 039265 94 LGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 94 ~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
|+++. ++.+|+.+ +|+||+|+|||||||++||+|.++ ++..++|.++ +..+
T Consensus 13 w~l~~i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~---------------------~~~~~~~~~~-----~~~~ 65 (279)
T d1thma_ 13 YGPQKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK---------------------VVGGWDFVDN-----DSTP 65 (279)
T ss_dssp CHHHHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT---------------------EEEEEETTTT-----BSCC
T ss_pred cChhhCCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC---------------------eecccccccc-----Cccc
Confidence 55543 45699988 999999999999999999999753 5556677654 4567
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.|..+|||||||+|++...+ ...+.|+||+|+|+.+|++... + +...+++++|+++.+.+++|+|+|||
T Consensus 66 ~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~--~~~~~~~~~~ai~~~~~~~~~i~n~S~G 135 (279)
T d1thma_ 66 QNGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNS--GSGTWTAVANGITYAADQGAKVISLSLG 135 (279)
T ss_dssp CCSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTT--SCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred ccccccccccceeeeeccCC--------CccccccCCcceEEEEEEEecC--CCCcHHHHHHHHHHHhhcCCceeccccC
Confidence 78899999999999988532 2234899999999999999876 5 78889999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 251 GGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
... .......+...+.++|+++|+|+||+|......+...+++|+|||++.
T Consensus 136 ~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~-------------------------- 186 (279)
T d1thma_ 136 GTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-------------------------- 186 (279)
T ss_dssp BSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT--------------------------
T ss_pred ccc---cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC--------------------------
Confidence 763 334566677788999999999999999998888889999999998521
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCC
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDF 490 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~ 490 (708)
.+.++.||++|++. ||+|||.+|+++.+.
T Consensus 187 ---------------------------------------~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~---- 215 (279)
T d1thma_ 187 ---------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---- 215 (279)
T ss_dssp ---------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETT----
T ss_pred ---------------------------------------CCCCccccCCCceE--------EEeeeeeccccccCc----
Confidence 22678999999987 999999999999987
Q ss_pred CCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCC
Q 039265 491 NTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSR 570 (708)
Q Consensus 491 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~ 570 (708)
+.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++. ..+..||+|+||+.+
T Consensus 216 -----~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~-------------g~~~~~G~G~vn~~~ 275 (279)
T d1thma_ 216 -----STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS-------------GTGTYWAKGRVNAYK 275 (279)
T ss_dssp -----TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCT-------------TBTTTBSSEECCHHH
T ss_pred -----ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCC-------------CCCCcceeeeEcHHH
Confidence 7899999999999999999999999765 78999999999998763 244689999999999
Q ss_pred CCC
Q 039265 571 AND 573 (708)
Q Consensus 571 Al~ 573 (708)
||+
T Consensus 276 Av~ 278 (279)
T d1thma_ 276 AVQ 278 (279)
T ss_dssp HHH
T ss_pred hhC
Confidence 985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=4.5e-49 Score=408.49 Aligned_cols=259 Identities=33% Similarity=0.493 Sum_probs=216.8
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
++.+|+++++|+||+|||||||||++||+|+. ...+++.... .....+..+||
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~-----------------------~~~~~~~~~~----~~~~~~~~~HG 65 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------AGGASMVPSE----TNPFQDNNSHG 65 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------EEEEECCTTC----CCTTCCSSSHH
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhh-----------------------cCCccccCCC----CCCCcCcCCCC
Confidence 56799999999999999999999999999962 2334444321 12334567999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFF 257 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~ 257 (708)
|||||||+|.... ....|+||+|+|+.+|++..+ + ....+++++|+|+++.+++|+|+|||.. ..
T Consensus 66 T~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~--~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~---~~ 131 (281)
T d1to2e_ 66 THVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGAD--GSGQYSWIINGIEWAIANNMDVINMSLGGP---SG 131 (281)
T ss_dssp HHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTT--SEECHHHHHHHHHHHHHTTCSEEEECEEBS---CC
T ss_pred ceeecccccCCCC---------CCcceeecccEEEEEEEeCCC--CCcCHHHHHHHHHHHHhccccccccccCCC---cc
Confidence 9999999987421 123799999999999999876 5 6788899999999999999999999975 34
Q ss_pred CCHHHHHHHHHHhcCceEEEecCCCCCCC----CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCC
Q 039265 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFN----STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333 (708)
Q Consensus 258 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (708)
...+..++.++.++|+++|+||||+|... ..+++..+++|+||+.+.
T Consensus 132 ~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------- 182 (281)
T d1to2e_ 132 SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----------------------------- 182 (281)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----------------------------
T ss_pred hHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC-----------------------------
Confidence 45677778889999999999999998653 345677889999998521
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccce
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 413 (708)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCC
Q 039265 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTN 493 (708)
Q Consensus 414 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~ 493 (708)
.+.++.||++||.. |++|||.+|+++.+.
T Consensus 183 ------------------------------------~~~~~~~S~~G~~~--------d~~apG~~i~s~~~~------- 211 (281)
T d1to2e_ 183 ------------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTLPG------- 211 (281)
T ss_dssp ------------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEETT-------
T ss_pred ------------------------------------CCCCCcccCCCCCc--------cccCCCCCceeecCC-------
Confidence 12678899999976 999999999999886
Q ss_pred CCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 494 PKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 494 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++. .+..||+|+||+.+||+
T Consensus 212 --~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------------~~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 212 --NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------------DSFYYGKGLINVQAAAQ 275 (281)
T ss_dssp --TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS--------------CHHHHTTCBCCHHHHTS
T ss_pred --CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCcccHHHHHh
Confidence 78999999999999999999999999999999999999999999763 34579999999999998
Q ss_pred C
Q 039265 574 P 574 (708)
Q Consensus 574 ~ 574 (708)
.
T Consensus 276 ~ 276 (281)
T d1to2e_ 276 H 276 (281)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=5.2e-49 Score=405.29 Aligned_cols=256 Identities=33% Similarity=0.470 Sum_probs=219.0
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
++.+|.++++|+||+||||||||| +||+|.. ...++|..+ ...+.|.++||
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~-----------------------~~~~~~~~~-----~~~~~d~~~HG 63 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNI-----------------------RGGASFVPG-----EPSTQDGNGHG 63 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCE-----------------------EEEEECSTT-----CCSCSCSSSHH
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCc-----------------------cccccccCC-----CCCccccchhh
Confidence 566999999999999999999998 8999952 234556654 34567889999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFF 257 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~ 257 (708)
|||||||++.... ....|+||+|+|+.+|++... + .....+.++++++..+++++||+|||... .
T Consensus 64 T~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~--~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~---~ 129 (269)
T d1gcia_ 64 THVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGAS--GSGSVSSIAQGLEWAGNNGMHVANLSLGSPS---P 129 (269)
T ss_dssp HHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTT--SCBCHHHHHHHHHHHHHTTCSEEEECCCBSS---C
T ss_pred heecccccccCCC---------ccccccCCceEEEEEEEecCC--CCccHHHHHHHHHHHHhcccccccccccccc---c
Confidence 9999999987421 224799999999999999876 5 67788999999999999999999999763 2
Q ss_pred CCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCcee
Q 039265 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLP 337 (708)
Q Consensus 258 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (708)
......+...+.++|+++|+||||+|.....+|+..|++|+||+.+.
T Consensus 130 ~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------------------- 176 (269)
T d1gcia_ 130 SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ--------------------------------- 176 (269)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT---------------------------------
T ss_pred cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc---------------------------------
Confidence 34455666788999999999999999988889999999999998521
Q ss_pred EEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEc
Q 039265 338 LVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVS 417 (708)
Q Consensus 338 ~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 417 (708)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcc
Q 039265 418 NDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSI 497 (708)
Q Consensus 418 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 497 (708)
.+.++.||++||.. ||+|||.++.++.+. ..
T Consensus 177 --------------------------------~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~---------~~ 207 (269)
T d1gcia_ 177 --------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPG---------ST 207 (269)
T ss_dssp --------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETT---------TE
T ss_pred --------------------------------CCCcccccCCCCCc--------eEEEeeecceeccCC---------Cc
Confidence 12678899999875 999999999999876 78
Q ss_pred eeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 498 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..||+|+||+++|++
T Consensus 208 ~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------------~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 208 YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS--------------CHHHHTTCBCCHHHHTC
T ss_pred eEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC--------------CCCCcccCeEcHHHhcC
Confidence 999999999999999999999999999999999999999998763 33579999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=3.8e-44 Score=376.47 Aligned_cols=293 Identities=27% Similarity=0.371 Sum_probs=221.1
Q ss_pred cccccc--CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCC
Q 039265 93 FLGLHQ--GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEP 170 (708)
Q Consensus 93 ~~g~~~--~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~ 170 (708)
.||+++ ++.+|..+++|+||+|+|||||||++||+|.++ +...++|....... ...
T Consensus 7 ~wgl~~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------~~~~~~~~~~~~~~-~~~ 64 (309)
T d2ixta1 7 PWGIKAIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------VEQCKDFTGATTPI-NNS 64 (309)
T ss_dssp CHHHHHHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------EEEEEESSSSSSCE-ETC
T ss_pred ChhHhhcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------ccccccccCCCCCC-CCC
Confidence 366654 677999999999999999999999999999753 44455665432211 345
Q ss_pred CCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCC-----CcE
Q 039265 171 PIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDG-----VDV 244 (708)
Q Consensus 171 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g-----~dV 244 (708)
..|..+|||||||||+|.... ....+.||||+|+|+.++++... + +..++++.+++++++.+ ..|
T Consensus 65 ~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~v 135 (309)
T d2ixta1 65 CTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS--GSGYSDDIAAAIRHAADQATATGTKTI 135 (309)
T ss_dssp CCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT--SCCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred ccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCC--CCccccccccccccccccccccccccc
Confidence 667899999999999987522 22234799999999999998776 5 77888999999988753 478
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC--cccCCCCceEEEcccccCcceEEEEEcCCCceeee
Q 039265 245 LSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS--TISNEAPWILTVGASTLDRSIVATAKLGNREEFDG 322 (708)
Q Consensus 245 In~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~ 322 (708)
+|+||+... .......++..+.++|+++|+||||++.... .+++..+++++|++........
T Consensus 136 ~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~------------- 199 (309)
T d2ixta1 136 ISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNG------------- 199 (309)
T ss_dssp EEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETT-------------
T ss_pred ccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccc-------------
Confidence 999998753 2345556667888999999999999986653 3456778888888753211000
Q ss_pred eeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc
Q 039265 323 ESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF 402 (708)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~ 402 (708)
...
T Consensus 200 ------------------------------------------~~~----------------------------------- 202 (309)
T d2ixta1 200 ------------------------------------------TYR----------------------------------- 202 (309)
T ss_dssp ------------------------------------------EEE-----------------------------------
T ss_pred ------------------------------------------ccc-----------------------------------
Confidence 000
Q ss_pred ccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEe
Q 039265 403 SVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILA 482 (708)
Q Consensus 403 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~s 482 (708)
.........++++|+.. ....||||+|||.+|++
T Consensus 203 --------------------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s 236 (309)
T d2ixta1 203 --------------------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYS 236 (309)
T ss_dssp --------------------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEE
T ss_pred --------------------------------------------ccccccccccccccccc--cCCCcceeecCCCceee
Confidence 00011334566777665 35679999999999999
Q ss_pred eecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccC
Q 039265 483 AWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIG 562 (708)
Q Consensus 483 a~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G 562 (708)
+.+. ..|..++|||||||+|||++|||+|++|+|+++|||++|++||++++..+.. ......++.+|
T Consensus 237 ~~~~---------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~----g~~~~~~~~~g 303 (309)
T d2ixta1 237 TWYN---------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASG 303 (309)
T ss_dssp ECTT---------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST----TCCSSSBTTTB
T ss_pred ecCC---------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc----CCccCCCcccC
Confidence 9876 7899999999999999999999999999999999999999999987654321 12345677889
Q ss_pred CCCCCc
Q 039265 563 AGHVNP 568 (708)
Q Consensus 563 ~G~vn~ 568 (708)
+|++|+
T Consensus 304 ~G~~~v 309 (309)
T d2ixta1 304 FGFARV 309 (309)
T ss_dssp TCBCCC
T ss_pred CCEecC
Confidence 999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2.7e-43 Score=364.39 Aligned_cols=238 Identities=34% Similarity=0.467 Sum_probs=194.6
Q ss_pred cCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHH
Q 039265 105 ESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGT 184 (708)
Q Consensus 105 ~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGi 184 (708)
...+|+||+|||||+|||++||+|.++ +.....+ ...+.|.++||||||||
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------~~~~~~~--------~~~~~d~~gHGT~VAgi 76 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR---------------------AQMVKTY--------YYSSRDGNGHGTHCAGT 76 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------EEEEEES--------SSCSSCSSSHHHHHHHH
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC---------------------ceeccCC--------CCCcccccCcccccccc
Confidence 455999999999999999999999854 1111112 23456788999999999
Q ss_pred hhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC-------CcEEEEccCCCCCCCC
Q 039265 185 AAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG-------VDVLSISIGGGSVPFF 257 (708)
Q Consensus 185 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g-------~dVIn~S~G~~~~~~~ 257 (708)
|+|.. .|+||+|+|+.+|++.... ....+.+..+++++.... ++|+|+|||.. .
T Consensus 77 ia~~~--------------~G~a~~a~l~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~----~ 137 (279)
T d2pwaa1 77 VGSRT--------------YGVAKKTQLFGVKVLDDNG-SGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG----Y 137 (279)
T ss_dssp HHCTT--------------TCSSTTCEEEEEECSCTTS-CCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----C
T ss_pred ccccc--------------cccCCCccccceeeecCCc-ccccccccchhheecccccccccccccceeccCCCc----c
Confidence 99873 6999999999999987761 267788899999987643 45999999975 2
Q ss_pred CCHHHHHHHHHHhcCceEEEecCCCCCCCCc-ccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCce
Q 039265 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFNST-ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPL 336 (708)
Q Consensus 258 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (708)
.+.+..++.++.++|+++|+||||++..... .+...|++|+|||.+
T Consensus 138 ~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~--------------------------------- 184 (279)
T d2pwaa1 138 SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASD--------------------------------- 184 (279)
T ss_dssp CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEEC---------------------------------
T ss_pred ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEe---------------------------------
Confidence 3566777778899999999999999876544 567889999999852
Q ss_pred eEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEE
Q 039265 337 PLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHV 416 (708)
Q Consensus 337 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i 416 (708)
T Consensus 185 -------------------------------------------------------------------------------- 184 (279)
T d2pwaa1 185 -------------------------------------------------------------------------------- 184 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCc
Q 039265 417 SNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496 (708)
Q Consensus 417 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 496 (708)
..+.++.||++||.. ||+|||.+|+++++. +
T Consensus 185 --------------------------------~~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~---------~ 215 (279)
T d2pwaa1 185 --------------------------------RYDRRSSFSNYGSVL--------DIFGPGTDILSTWIG---------G 215 (279)
T ss_dssp --------------------------------TTSBBCTTCCBSTTC--------CEEEECSSEEEEETT---------T
T ss_pred --------------------------------ecCCCccccCCCCcc--------ccccccccccccccC---------C
Confidence 123678999999976 999999999999987 7
Q ss_pred ceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCc
Q 039265 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNP 568 (708)
Q Consensus 497 ~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 568 (708)
.|..++|||||||+|||++|||+|++|.++++++|. |++||++. .....|+|++|+
T Consensus 216 ~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~---------------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG---------------DLSNIPFGTVNL 271 (279)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES---------------CCBSCCTTSCCE
T ss_pred cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC---------------CCCCCCCCChhh
Confidence 899999999999999999999999999999887775 67788753 234679999986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=8.3e-42 Score=359.97 Aligned_cols=295 Identities=28% Similarity=0.333 Sum_probs=218.1
Q ss_pred Cccccc-CCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 100 MGVWKE-SNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 100 ~~~~~~-g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+.+|.. |+||+||+|||||||||++||+|.... .| ..++...+.+.. ..+..|..|||
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~---------~~~~~~~~~~~~------~~~~~d~~gHG 69 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF---------RGKITALYALGR------TNNANDTNGHG 69 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT---------TTCEEEEEETTT------TTCCCCSSSHH
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc---------CCcEEeecCCCC------CCCCCCCCCCC
Confidence 347775 999999999999999999999997431 11 223444444443 34567889999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFF 257 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~ 257 (708)
|||||||+|+... ..||||+|+|+.+|++...... .....+..+++++...+++|+|+|||.......
T Consensus 70 T~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~~ 138 (318)
T d1wmda2 70 THVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAY 138 (318)
T ss_dssp HHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTCC
T ss_pred ccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeeccccccccccc
Confidence 9999999986321 2799999999999999765111 344457889999999999999999998755455
Q ss_pred CCHHHHHHHHHHhcCceEEEecCCCCCCCCccc--CCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCc
Q 039265 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTIS--NEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTP 335 (708)
Q Consensus 258 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (708)
......+...+.++++++|+|+||.|....... +..++++++.+........
T Consensus 139 ~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------------------- 192 (318)
T d1wmda2 139 TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-------------------------- 192 (318)
T ss_dssp CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG--------------------------
T ss_pred chhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc--------------------------
Confidence 556666666778899999999999997765543 4456677766642111000
Q ss_pred eeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEE
Q 039265 336 LPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATH 415 (708)
Q Consensus 336 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~ 415 (708)
+ .
T Consensus 193 ----------------~---------------------~----------------------------------------- 194 (318)
T d1wmda2 193 ----------------G---------------------S----------------------------------------- 194 (318)
T ss_dssp ----------------C---------------------G-----------------------------------------
T ss_pred ----------------c---------------------c-----------------------------------------
Confidence 0 0
Q ss_pred EcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC---CCC
Q 039265 416 VSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD---FNT 492 (708)
Q Consensus 416 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~---~~~ 492 (708)
.......+..||++||.. ....|||++|||.+|+++.+.... ...
T Consensus 195 ------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~~~ 242 (318)
T d1wmda2 195 ------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWA 242 (318)
T ss_dssp ------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGSSE
T ss_pred ------------------------------ccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCcccc
Confidence 001123567889999987 457899999999999998765330 011
Q ss_pred CCCcceeeccchhhhHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCC
Q 039265 493 NPKSIFNIMSGTSMACPHLSGIAALLKSSH-----PYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567 (708)
Q Consensus 493 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn 567 (708)
.....|..++|||||||+|||++|||+|++ +.+++.+||++|++||+++.. ..+...||||+||
T Consensus 243 ~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~-----------~~~~~~~G~G~ld 311 (318)
T d1wmda2 243 NHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-----------GYPNGNQGWGRVT 311 (318)
T ss_dssp EEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----------CSSCTTTTTCBCC
T ss_pred CCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-----------CCCCCCeeeceec
Confidence 112557889999999999999999999965 468899999999999997743 3456789999999
Q ss_pred cCCCCC
Q 039265 568 PSRAND 573 (708)
Q Consensus 568 ~~~Al~ 573 (708)
+.+||+
T Consensus 312 ~~~Al~ 317 (318)
T d1wmda2 312 LDKSLN 317 (318)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-40 Score=352.62 Aligned_cols=282 Identities=17% Similarity=0.223 Sum_probs=193.4
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCC--CC-CCCCCCCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNV--KG-TEPPIDVD 175 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~--~~-~~~~~d~~ 175 (708)
++.+|..+++|+||+|||||||||++||+|.++.. ..++|....+. .. .....|..
T Consensus 26 ~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
T d1p8ja2 26 VKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD---------------------PGASFDVNDQDPDPQPRYTQMNDN 84 (334)
T ss_dssp CHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC---------------------GGGCEETTTTBSCCCCCCCTTCTT
T ss_pred HHHHHhcCCCCCCeEEEEEccCCCCCChhHhhccc---------------------cCCCccccCCCCccccccccccCc
Confidence 45699999999999999999999999999985411 11112111110 00 23455789
Q ss_pred CChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEEccCCCCC
Q 039265 176 GHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-DGVDVLSISIGGGSV 254 (708)
Q Consensus 176 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~ 254 (708)
+|||||||||+|...++. ...|+||+++++.+|++... ..+.+.++.++++ ++++++|||||....
T Consensus 85 gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~n~S~g~~~~ 151 (334)
T d1p8ja2 85 RHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDGE-----VTDAVEARSLGLNPNHIHIYSASWGPEDD 151 (334)
T ss_dssp CHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSSC-----CCHHHHHHHHTSCTTTCCEEEECCBSCCS
T ss_pred cchhhhhhhhhhcccccc--------ccccccccccccchhhcccc-----ccchHHHHHHHhhhcCCcEEeCCCCCCCc
Confidence 999999999998853221 13799999999999987543 3455667777665 679999999997532
Q ss_pred -CCC---C-----CHHHHHHHHHHhcCceEEEecCCCCCCCCccc----CCCCceEEEcccccCcceEEEEEcCCCceee
Q 039265 255 -PFF---N-----DSIAVGSFAAIQKGIFVSCAAGNSGPFNSTIS----NEAPWILTVGASTLDRSIVATAKLGNREEFD 321 (708)
Q Consensus 255 -~~~---~-----~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~----~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 321 (708)
... . ..+..+...+..+|+++|+||||++....... ...+.+++|++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------- 214 (334)
T d1p8ja2 152 GKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ----------------- 214 (334)
T ss_dssp SSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT-----------------
T ss_pred CcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc-----------------
Confidence 111 1 11223334456799999999999876543322 23344555555321
Q ss_pred eeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCC
Q 039265 322 GESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA 401 (708)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~ 401 (708)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCC---
Q 039265 402 FSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGL--- 478 (708)
Q Consensus 402 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~--- 478 (708)
.+..+.||++|+... .+..+||.
T Consensus 215 ------------------------------------------------~g~~~~~s~~~~~~~------~~~~~~~~~~~ 240 (334)
T d1p8ja2 215 ------------------------------------------------FGNVPWYSEACSSTL------ATTYSSGNQNE 240 (334)
T ss_dssp ------------------------------------------------TSCCCTTCCBCTTCC------EEEECCCSTTS
T ss_pred ------------------------------------------------CCceeeecccCCccc------ccccccccccc
Confidence 124445566655441 13444443
Q ss_pred --cEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCC
Q 039265 479 --SILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPA 556 (708)
Q Consensus 479 --~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~ 556 (708)
.+.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++.......+........
T Consensus 241 ~~~~~~~~~~---------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~ 311 (334)
T d1p8ja2 241 KQIVTTDLRQ---------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRK 311 (334)
T ss_dssp CCEEEEETTT---------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCE
T ss_pred ccccccccCC---------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCCcc
Confidence 23333322 6788999999999999999999999999999999999999999987665544444333344
Q ss_pred CCCccCCCCCCcCCCCCC
Q 039265 557 DIFAIGAGHVNPSRANDP 574 (708)
Q Consensus 557 ~~~~~G~G~vn~~~Al~~ 574 (708)
.+..||+|+||+++||+.
T Consensus 312 ~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 312 VSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp EBTTTBTCBCCHHHHHHH
T ss_pred cCCCCcceEeCHHHHHHH
Confidence 567899999999999973
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-40 Score=353.04 Aligned_cols=287 Identities=22% Similarity=0.244 Sum_probs=205.1
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+..+|.++++|+||+|||||||||++||+|.++-.. .+.++|....+. .....++.+||
T Consensus 35 ~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~-------------------~~~~~~~~~~~~--~~~~~~~~~HG 93 (339)
T d2id4a2 35 VLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-------------------EGSWDFNDNTNL--PKPRLSDDYHG 93 (339)
T ss_dssp CHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG-------------------GGCEETTTTBSC--CCCCSTTTTHH
T ss_pred HHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc-------------------ccccccccCCCc--cCCCccccccc
Confidence 556999999999999999999999999999864111 012344432111 23455678999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC---
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP--- 255 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--- 255 (708)
|||||+|+|....+ ..+.|+||+|+|+.+++.... ....++..++.++++. .+|+|+|||.....
T Consensus 94 T~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~~ 161 (339)
T d2id4a2 94 TRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSGD---ITTEDEAASLIYGLDV-NDIYSCSWGPADDGRHL 161 (339)
T ss_dssp HHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTSC---CCHHHHHHHTTTTTTT-CSEEEECEESCCSSSCC
T ss_pred ceeeeccccccccc--------ccccccccccccceEEEeecc---ccchHHHHHHHHHHhh-CCEEeccCCCCCCcccc
Confidence 99999999875322 224799999999999997543 6677788888887665 48999999974311
Q ss_pred -CCCCH-----HHHHHHHHHhcCceEEEecCCCCCCCCcc--c--CCCCceEEEcccccCcceEEEEEcCCCceeeeeec
Q 039265 256 -FFNDS-----IAVGSFAAIQKGIFVSCAAGNSGPFNSTI--S--NEAPWILTVGASTLDRSIVATAKLGNREEFDGESV 325 (708)
Q Consensus 256 -~~~~~-----~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~--~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 325 (708)
..... ...+...+..+|+++|+||||.+...... + ...+.+++|++++
T Consensus 162 ~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 219 (339)
T d2id4a2 162 QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID---------------------- 219 (339)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC----------------------
T ss_pred cCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc----------------------
Confidence 11111 22233445579999999999987543222 2 1233444444321
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc
Q 039265 326 FQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI 405 (708)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~ 405 (708)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeec
Q 039265 406 ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWF 485 (708)
Q Consensus 406 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~ 485 (708)
..+..+.||++|+.. ...++..+||..|.++..
T Consensus 220 -------------------------------------------~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~ 252 (339)
T d2id4a2 220 -------------------------------------------HKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDI 252 (339)
T ss_dssp -------------------------------------------TTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECS
T ss_pred -------------------------------------------ccccccccccccCcc----ceeeeeeccccccceecc
Confidence 122456667777654 345688889999988765
Q ss_pred CCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCcc-ccccCCCCCCCCccCCC
Q 039265 486 EPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGER-IVDETLRPADIFAIGAG 564 (708)
Q Consensus 486 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~-~~~~~~~~~~~~~~G~G 564 (708)
.. ..|..++|||||||||||++|||+|++|+|++.|||.+|++||++++..... +.+..........||||
T Consensus 253 ~~--------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G 324 (339)
T d2id4a2 253 NG--------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFG 324 (339)
T ss_dssp TT--------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTC
T ss_pred CC--------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccch
Confidence 42 6789999999999999999999999999999999999999999988654322 23333344566789999
Q ss_pred CCCcCCCCCCc
Q 039265 565 HVNPSRANDPG 575 (708)
Q Consensus 565 ~vn~~~Al~~~ 575 (708)
+||+.+||+.+
T Consensus 325 ~ln~~~Av~~a 335 (339)
T d2id4a2 325 KIDAHKLIEMS 335 (339)
T ss_dssp BCCHHHHHHHH
T ss_pred hhCHHHHHHHH
Confidence 99999999843
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=6.9e-32 Score=287.94 Aligned_cols=313 Identities=19% Similarity=0.200 Sum_probs=181.3
Q ss_pred ccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHH
Q 039265 104 KESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAG 183 (708)
Q Consensus 104 ~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAG 183 (708)
.++++|+||+|||||||||++||+|.+. |+.... ... ...+.+..+|+|||++
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~~~------------~~~-------~~~~~~~~g~~~~~~g 70 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FASLGV------------SAP-------QVVSVSVDGATNQPTG 70 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHTTC------------CCC-------CEEEEESTTCCCCCCS
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------HhhcCC------------CCC-------CCceeCCCCCCCCCCC
Confidence 3689999999999999999999999742 110000 000 1122234566666666
Q ss_pred HhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH---HCCCcEEEEccCCCCCC---CC
Q 039265 184 TAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAI---EDGVDVLSISIGGGSVP---FF 257 (708)
Q Consensus 184 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~---~~g~dVIn~S~G~~~~~---~~ 257 (708)
++++...... . ....+.||||+|+|+.+|+.... ...+.++++++ +++++|||||||..... ..
T Consensus 71 ~~~~~~~~~~---~-d~~~~~GvAp~A~i~~~~~~~~~------~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~ 140 (357)
T d1t1ga_ 71 DPNGPDGEVE---L-DIEVAGALAPGAKIAVYFAPNTD------AGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPAS 140 (357)
T ss_dssp CTTSTHHHHH---H-HHHHHHHHSTTSEEEEEECCSSH------HHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHH
T ss_pred cccccccccc---C-CcccceeecccCeEEEEecccCC------CchHHHHHHHHHhhhcCCeEEecccccCcCccccch
Confidence 5554321100 0 01124799999999999996433 34455566655 45899999999975321 12
Q ss_pred CCHHHHHHHHHHhcCceEEEecCCCCCCCC--------cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFNS--------TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 258 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~--------~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
...+..+...+..+|+++|+|+||+|.... ..+...+++++|++...... .+.. .....+...
T Consensus 141 ~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~-~~~~~~~~~ 211 (357)
T d1t1ga_ 141 IAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVAS--------AGRI-ERETVWNDG 211 (357)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEEC--------SSCE-EEEEECBCH
T ss_pred HHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCC--------CCcc-ccceecccc
Confidence 234556666777899999999999985432 22346778888887532111 0000 000000000
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
. . .. . ..+ +..
T Consensus 212 ~------~-~~-----------~-----------------~~~----------------------------g~s------ 222 (357)
T d1t1ga_ 212 P------D-GG-----------S-----------------TGG----------------------------GVS------ 222 (357)
T ss_dssp H------H-HC-----------B-----------------CCC----------------------------EEC------
T ss_pred c------c-cc-----------c-----------------ccC----------------------------Ccc------
Confidence 0 0 00 0 000 000
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcE--EeeecCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSI--LAAWFEP 487 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I--~sa~~~~ 487 (708)
..+ ............+++.+++. .++.|||+.+++... +++...
T Consensus 223 ----------------------------~~~---~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~- 268 (357)
T d1t1ga_ 223 ----------------------------RIF---PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID- 268 (357)
T ss_dssp ----------------------------SSS---CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET-
T ss_pred ----------------------------ccc---ccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC-
Confidence 000 00001123456667777766 579999999997654 455544
Q ss_pred CCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCC---CCHHHHHHHHHccccccccCCcccccc----CCCCCCCCc
Q 039265 488 LDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPY---WSPAAIKSALMTTADLLNMNGERIVDE----TLRPADIFA 560 (708)
Q Consensus 488 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---~s~~~vk~~L~~TA~~~~~~~~~~~~~----~~~~~~~~~ 560 (708)
+.|..++|||||||||||++|||+|+++. +...+++.+...+.+++.......... ...+.++..
T Consensus 269 --------~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~ 340 (357)
T d1t1ga_ 269 --------GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPC 340 (357)
T ss_dssp --------TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTT
T ss_pred --------CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCC
Confidence 78999999999999999999999998754 233444443333333321110111000 134557788
Q ss_pred cCCCCCCcCCCCC
Q 039265 561 IGAGHVNPSRAND 573 (708)
Q Consensus 561 ~G~G~vn~~~Al~ 573 (708)
+|+|++|+.++++
T Consensus 341 tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 341 TGLGSPIGIRLLQ 353 (357)
T ss_dssp TBTCEECHHHHHH
T ss_pred ccCchhhHHHHHH
Confidence 9999999887765
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=3.4e-29 Score=268.44 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=114.9
Q ss_pred CCCCCccEEEEEcCCCCCC-CCCCCC----CCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHH
Q 039265 106 SNFGKGVIIGILDGGINPD-HPSFSD----EGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTH 180 (708)
Q Consensus 106 g~~G~Gv~VaVIDtGid~~-Hp~f~~----~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGTh 180 (708)
..+|+||+|||||+|.++. |+||.. .+++. ++. .. .....+..+||||
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~f~~~~~~~~-------------~~~-----~~---------~~~~~~~~~~~~~ 73 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQFTSANGLAS-------------VNT-----QT---------IQTGSSNGDYSDD 73 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHHHHHHTTCCC-------------CCE-----EE---------EECSCTTSCCCBC
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHHHHHhcCCCC-------------CCC-----Ce---------ecCCCCCCCCCCC
Confidence 4589999999999998754 666641 00100 000 00 1223456789999
Q ss_pred HHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHH-CCCcEEEEccCCCC----C
Q 039265 181 VAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIE-DGVDVLSISIGGGS----V 254 (708)
Q Consensus 181 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~----~ 254 (708)
+++++.+.... ..+.||||+|+|+.++++.+. + ....+++++|+||++ ++++|||+|||... .
T Consensus 74 ~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~ 142 (369)
T d1ga6a_ 74 QQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQ--SASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANA 142 (369)
T ss_dssp HHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECT--TSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHH
T ss_pred CCcceeecccc---------ccccccccCceEEEEEEeCCC--CCcchHHHHHHHHHHHHcCCCceeeccccccccCCCc
Confidence 99998765311 123799999999999999876 5 667789999999986 57999999999742 1
Q ss_pred CCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC-------------cccCCCCceEEEcccc
Q 039265 255 PFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS-------------TISNEAPWILTVGAST 303 (708)
Q Consensus 255 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-------------~~~~~~p~vitVga~~ 303 (708)
....+.+..++.++..+|++||+||||+|.... .+++..+++++|+++.
T Consensus 143 ~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 143 DGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred chHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 234456677777888999999999999986432 2345678899998853
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.92 E-value=1.3e-09 Score=84.95 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=56.7
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEecee
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERK 82 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~ 82 (708)
+++|||.||+....... ..+. +.+. ..+.+|.++|+ .|+||++++++++++.|++.|+|.+||+|+.
T Consensus 1 e~~YIV~fK~~~~~~~~--~~~~----~~v~------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v 67 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMSS--AKKK----DVIS------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHI 67 (71)
T ss_dssp CEEEEEEECSSSSCCSH--HHHH----HHHH------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCE
T ss_pred CCcEEEEECCCCChHHH--HHHH----HHHH------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcE
Confidence 47999999999765443 2222 2233 23789999998 7999999999999999999999999999998
Q ss_pred ecc
Q 039265 83 VRL 85 (708)
Q Consensus 83 ~~~ 85 (708)
++.
T Consensus 68 ~~a 70 (71)
T d1scjb_ 68 AHE 70 (71)
T ss_dssp EEE
T ss_pred EEc
Confidence 764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.72 E-value=1.3e-08 Score=79.33 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=50.8
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccCCCCCCccEEEec-ceeEEEEEEcCHHHHHHHhcCCC--eEEEEe
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLESSDVQQRPFYSYK-NVISGFAAKLTEEEVQDMKKKNG--FVSARP 79 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~-~~~~g~sv~~~~~~i~~L~~~~~--V~~V~~ 79 (708)
-++|||.||+......+ ..+..++ .+ .+.++.+.|. ..|+||+++++++.++.|+++|+ |.+||+
T Consensus 2 aG~YIVvlK~~~~~~~~--~~~~~~~----~~------~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~ 69 (72)
T d1v5ib1 2 AGKFIVIFKNDVSEDKI--RETKDEV----IA------EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEE 69 (72)
T ss_dssp CEEEEEEECTTCCHHHH--HHHHHHH----HH------HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEE
T ss_pred CccEEEEECCCCCHHHH--HHHHHHH----Hh------cCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECC
Confidence 47999999998754333 3333332 22 2456778887 58999999999999999999665 999999
Q ss_pred cee
Q 039265 80 ERK 82 (708)
Q Consensus 80 ~~~ 82 (708)
|..
T Consensus 70 D~V 72 (72)
T d1v5ib1 70 DHV 72 (72)
T ss_dssp CCE
T ss_pred CCC
Confidence 863
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.68 E-value=0.0095 Score=48.63 Aligned_cols=86 Identities=16% Similarity=0.052 Sum_probs=62.3
Q ss_pred cccCcccccCCCceEEEEEEEecCCCcee-EEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEE
Q 039265 610 LNYPSFSVTLGPAQTFTRTVTNVGQVYSS-YAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQG 688 (708)
Q Consensus 610 ~n~ps~~~~~~~~~~~~~tv~n~g~~~~t-y~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G 688 (708)
+..|++.+.-+...+++++|+|.|....+ -++.+..|.|=.++ |....+.+ |++++++++++++..... +.|.=
T Consensus 6 ~t~p~~~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L~p-G~s~~~~~~Vt~p~~a~~--G~Y~i 80 (103)
T d1w8oa1 6 FTIPDVALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPLMP-GRQAKGQVTITVPAGTTP--GRYRV 80 (103)
T ss_dssp EECCCEEECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCBCT-TCEEEEEEEEECCTTCCC--EEEEE
T ss_pred ccCcceeeCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--CcceeeCC-CCcEEEEEEEECCCCCCC--ceEEE
Confidence 44566666666689999999999987654 57888899987664 55566777 999999999999876542 45554
Q ss_pred EEEEEcCceEEE
Q 039265 689 YITWVSAKYSVR 700 (708)
Q Consensus 689 ~i~~~~~~~~~~ 700 (708)
.+..+++.....
T Consensus 81 ~~~a~~~~~~~s 92 (103)
T d1w8oa1 81 GATLRTSAGNAS 92 (103)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEeCCcceE
Confidence 566665544333
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0023 Score=58.31 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=55.0
Q ss_pred CcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc-------------cc--------------------
Q 039265 360 IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV-------------IA-------------------- 406 (708)
Q Consensus 360 ~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~-------------~~-------------------- 406 (708)
.+++|||+|+++| .+.+.+|..+++.+||.|+|+|.+..+.... ..
T Consensus 59 ~~v~GkI~l~r~G-~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 59 TPVNGSIVIVRAG-KITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SCCTTSEEEEESC-SSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred cccCceEEEEeCC-CCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 5789999999999 9999999999999999999999764321100 00
Q ss_pred -CCcccceEEEcHHHHHHHHHHHh
Q 039265 407 -DPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 407 -~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
.-..||+..|+..+++.|+..|.
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcCCeeeCCHHHHHHHHHHcC
Confidence 01247999999999999998874
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.01 Score=55.64 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=35.4
Q ss_pred CCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecC
Q 039265 359 GIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMND 397 (708)
Q Consensus 359 ~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~ 397 (708)
..+++|||+|+++| .+.+.+|..+++..||+|+|+|++
T Consensus 76 gi~~~gkIvl~ryG-~~~~~~Kv~~A~~~GA~GviiysD 113 (233)
T d3bi1a2 76 KINCSGKIVIARYG-KVFRGNKVKNAQLAGAKGVILYSD 113 (233)
T ss_dssp CCCCTTCEEEEECC-SSCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCcccceEEEEeCC-CCchhHHHHHHHHcCceEEEEecC
Confidence 45789999999999 899999999999999999999986
|
| >d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: PapD-like family: MSP-like domain: Major sperm protein, MSP species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.24 E-value=3 Score=34.21 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=45.3
Q ss_pred CceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEec
Q 039265 621 PAQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRS 676 (708)
Q Consensus 621 ~~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 676 (708)
...+..++|+|.++....|++....|.-.. |.|..=.+.+ +++..++|++.+.
T Consensus 23 ~~~~~~l~l~N~s~~~vafKvktt~p~~y~--v~P~~G~i~p-~~~~~i~V~~~~~ 75 (124)
T d1grwa_ 23 DKHTYHIKVINSSARRIGYGIKTTNMKRLG--VDPPCGVLDP-KEAVLLAVSCDAF 75 (124)
T ss_dssp SCEEEEEEEEECSSSCEEEEEEESCTTTEE--EESSEEEECT-TCEEEEEEEECCC
T ss_pred cEEEEEEEEECCCCCeEEEEEEeCCCceEE--EECCCCEECC-CCEEEEEEEEecC
Confidence 366777899999999999999999998765 5688888887 9999999999763
|