Citrus Sinensis ID: 039311
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 909 | 2.2.26 [Sep-21-2011] | |||||||
| Q40392 | 1144 | TMV resistance protein N | N/A | no | 0.793 | 0.630 | 0.349 | 1e-110 | |
| Q9SZ67 | 1895 | Probable WRKY transcripti | no | no | 0.609 | 0.292 | 0.401 | 1e-93 | |
| Q9FL92 | 1372 | Probable WRKY transcripti | no | no | 0.822 | 0.545 | 0.311 | 1e-91 | |
| Q9FH83 | 1288 | Probable WRKY transcripti | no | no | 0.852 | 0.601 | 0.312 | 1e-82 | |
| O82500 | 1095 | Putative disease resistan | no | no | 0.586 | 0.486 | 0.357 | 3e-81 | |
| O23530 | 1301 | Protein SUPPRESSOR OF npr | no | no | 0.709 | 0.495 | 0.323 | 1e-77 | |
| Q9FKN7 | 1613 | Protein DA1-related 4 OS= | no | no | 0.805 | 0.453 | 0.289 | 2e-73 | |
| Q9FKZ1 | 809 | Probable disease resistan | no | no | 0.511 | 0.574 | 0.257 | 3e-18 | |
| Q9FW44 | 787 | Disease resistance protei | no | no | 0.484 | 0.559 | 0.235 | 3e-16 | |
| Q9LVT1 | 623 | Putative disease resistan | no | no | 0.498 | 0.727 | 0.230 | 3e-15 |
| >sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 279/799 (34%), Positives = 426/799 (53%), Gaps = 78/799 (9%)
Query: 9 EKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQ-MEF 67
E G+ L+ LLS +L + + G + + RL KKVLIV DD+ + +E+
Sbjct: 254 ENKRGMHSLQNALLSELLRE-KANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEY 312
Query: 68 LIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVG 127
L G+ W GSR+IIT RDK +++ D IYEV L D ++ LF ++AFGK PN
Sbjct: 313 LAGDLDWFGNGSRIIITTRDKHLIEKN--DIIYEVTALPDHESIQLFKQHAFGKEVPNEN 370
Query: 128 YMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGL 187
+ +LS +++ YAKG+PLA+KV G L R+ +W+S I+ +K + I LK+S+DGL
Sbjct: 371 FEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGL 430
Query: 188 DDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILN-NKIMMHDL 246
+ ++Q +FLDIA F +GE+KD +++ L+ C AE G+ +L+DK L+ I N++ MHDL
Sbjct: 431 EPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDL 490
Query: 247 LQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAG 306
+Q+MG+ IV + KDPG+RSRLW +++ V++NNTGT A+E I + S + +
Sbjct: 491 IQDMGKYIVNFQ--KDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVS-SYSSTLRFSNQ 547
Query: 307 SFTNMHKLRFFKF--YSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENL 364
+ NM +LR F S+HY ++ + N LR P +S S + L
Sbjct: 548 AVKNMKRLRVFNMGRSSTHYA--IDYLPN-------NLRCFVCTNYPWESFPSTFELKML 598
Query: 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLET 424
V L++ H+S++ LW + L +L+ I+LS S+ LT+ PD + NLE +N C+ L E
Sbjct: 599 VHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEV 658
Query: 425 HSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIE---EL 481
H S+ +K++ L L C+SL +++ SL+ L L C +L PE+ ++ ++
Sbjct: 659 HHSLGCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQI 717
Query: 482 SLDGTAIQEFPSSI----ERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLA------ 531
+ G+ I+E PSSI ++ L+L N+ N L LPS IC+LKSL L+++
Sbjct: 718 HMQGSGIRELPSSIFQYKTHVTKLLLWNMKN---LVALPSSICRLKSLVSLSVSGCSKLE 774
Query: 532 ---------EALKELKAEGIAIREVPSSIACLKNLGRLSFESFM--CHEQMGLLLPISFG 580
+ L+ A I PSSI L L L F F H + P++ G
Sbjct: 775 SLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFP---PVAEG 831
Query: 581 LTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHC 638
L SL YL L+ C +I+ LPE +G LSS L L +NNFE +P SI QL L SL + C
Sbjct: 832 LHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDC 891
Query: 639 ERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEI 698
+RL LPELP +L+++ C AL + L T+ KL + +L +
Sbjct: 892 QRLTQLPELPPELNELHVDCHM---ALKFIHYLVTKRK------------KLHRVKLDDA 936
Query: 699 IKDAQRKMQLKATAWWEELEKQHCEVPR----GMICFPGSELPE----WFMFQSMGSSAT 750
D L A ++ + ++ + F G PE WF Q SS +
Sbjct: 937 HNDTM--YNLFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVS 994
Query: 751 FNLPPDWFSYN-FVGFALC 768
NLP +W+ + F+GFA+C
Sbjct: 995 VNLPENWYIPDKFLGFAVC 1013
|
Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Nicotiana glutinosa (taxid: 35889) |
| >sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (884), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 236/588 (40%), Positives = 325/588 (55%), Gaps = 34/588 (5%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
++++ +E E G A +R+ LS +L+ I I +F RL RK++L++ DDV+
Sbjct: 871 LKDLHKEVEVKGHDA-VRENFLSEVLEVEPHVIRISDIKTSFLRSRLQRKRILVILDDVN 929
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
++ +G + GSR+I+T+R+++V C +D +YEVK L + +L R
Sbjct: 930 DYRDVDTFLGTLNYFGPGSRIIMTSRNRRVFVLCKIDHVYEVKPLDIPKSLLLLDRGTCQ 989
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
Y LS +++K++ G P ++ L ++W +++K + I +
Sbjct: 990 IVLSPEVYKTLSLELVKFSNGNPQVLQFLSSI-----DREWNKLSQEVKTTSPIYIPGIF 1044
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVI-LNN 239
+ S GLDD E+ +FLDIA FF DKD V LDGCGFSA +G LVDK L+ I +N
Sbjct: 1045 EKSCCGLDDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHN 1104
Query: 240 KIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVK 299
+ M +Q GREIVRQES PG RSRLW+ + I +V N+TGT AIEGI LDM +K
Sbjct: 1105 LVDMLSFIQATGREIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLK 1164
Query: 300 EIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE--STELRYLQWHGCPLKSLSS 357
N F M LR K Y S E + V +GLE ++LR L W PL SL
Sbjct: 1165 -FDANPNVFEKMCNLRLLKLYCSK-AEEKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPK 1222
Query: 358 KIPPENLVSLEMPHSSIKQLWKGVQ--------RLVNLKHINLSHSEHLTKIPDLSLATN 409
PENLV L +P S K+LWKG + L LK + LS+S+ LTKIP LS ATN
Sbjct: 1223 SFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATN 1282
Query: 410 LESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLM 469
LE ++ +GC LL SI YL KLV LNLK C L ++ + + L SL+ L LSGCS L
Sbjct: 1283 LEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLG 1342
Query: 470 SFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLN 529
+FPE+S N++EL + GT IQE PSSI+ L L L+L N L+ LP+ I KLK LE LN
Sbjct: 1343 NFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLN 1402
Query: 530 LA---------------EALKELKAEGIAIREVPSSIACLKNLGRLSF 562
L+ + L+ L I+E+PSSI+ L L L F
Sbjct: 1403 LSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLF 1450
|
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 277/889 (31%), Positives = 414/889 (46%), Gaps = 141/889 (15%)
Query: 40 LNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTI 99
L+ RL+ K+VL+V DDV + +E +G W S +IIT++DK V + C V+ I
Sbjct: 231 LSLLRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRLCRVNQI 290
Query: 100 YEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR-RI 158
YEV+ L + +A LFS A + E+S K+IKYA G PLA+ + GR L G+ R
Sbjct: 291 YEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRP 350
Query: 159 KDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCG 218
+ E K+K P +K S+D L+D E+N+FLDIA FF+GE+ D V++ L+GCG
Sbjct: 351 PEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCG 410
Query: 219 FSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKRSRLW-------- 270
F +GI VLV+K L+ I N++ MH+L+Q++GR+I+ +E+ + +RSRLW
Sbjct: 411 FFPHVGIDVLVEKSLVTISENRVRMHNLIQDVGRQIINRET-RQTKRRSRLWEPCSIKYL 469
Query: 271 -------HHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSH 323
+E+ E IEG+ LD S + + +F NM LR FK YSS+
Sbjct: 470 LEDKEQNENEEQKTTFERAQVPEEIEGMFLDTSNLS-FDIKHVAFDNMLNLRLFKIYSSN 528
Query: 324 YGENVNKVHNF-RGLEST---ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK 379
V+ V+NF +G S+ LR L W PL+ L P +LV + MP+S +K+LW
Sbjct: 529 --PEVHHVNNFLKGSLSSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWG 586
Query: 380 GVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439
G + L LK I L HS+ L I DL A NLE ++ QGCT
Sbjct: 587 GTKDLEMLKTIRLCHSQQLVDIDDLLKAQNLEVVDLQGCT-------------------- 626
Query: 440 KHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499
L S + L L+ + LSGC+ + SFPE+ NIE L+L GT I E P SI + +
Sbjct: 627 ----RLQSFPATGQLLHLRVVNLSGCTEIKSFPEIPPNIETLNLQGTGIIELPLSIVKPN 682
Query: 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLK--NL 557
LLNL L +P + + +LE+ +L +K + P ++CL+ +
Sbjct: 683 YRELLNL-----LAEIPG-LSGVSNLEQSDLKPLTSLMKIS--TSYQNPGKLSCLELNDC 734
Query: 558 GRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNF 617
RL LP L L L L+ C +E + F
Sbjct: 735 SRLRS------------LPNMVNLELLKALDLSGCSELETIQ----------------GF 766
Query: 618 ERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSW 677
R L L+ +G + + +P+LP L AH C SL++ + + F +
Sbjct: 767 PR------NLKELYLVGTA----VRQVPQLPQSLEFFNAHGCVSLKS---IRLDFKKLPV 813
Query: 678 NSQFFYFVNCFKLDKNELKEIIKDA-------------------QRKMQLKATAWWEELE 718
+ + F NCF L + + + A Q+ +Q + +EL
Sbjct: 814 H---YTFSNCFDLSPQVVNDFLVQAMANVIAKHIPRERHVTGFSQKTVQRSSRDSQQELN 870
Query: 719 KQHCEVPRGMICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRDHHD 778
K C P + GSS+ L P W + VGFA+ V F + +
Sbjct: 871 KTLA----FSFCAPSHANQNSKLDLQPGSSSMTRLDPSWRN-TLVGFAMLVQVAFSEGYC 925
Query: 779 DGGGFQVFCECKLKTEDGLCRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYMFSD---G 835
D F + C CK K ++G +L W+ G + + DH F+ FD M D G
Sbjct: 926 DDTDFGISCVCKWKNKEGHSHRREINLHCWALG----KAVERDHTFVFFDVNMRPDTDEG 981
Query: 836 FDEYYYSDEVFIQFY--------LEDCCEVTKCGIHLLYAQDFSDSTED 876
D ++D V +F+ L D C VT+CG+ L+ A + + S E+
Sbjct: 982 NDPDIWADLVVFEFFPVNKQRKPLNDSCTVTRCGVRLITAVNCNTSIEN 1030
|
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 308 bits (789), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 281/899 (31%), Positives = 403/899 (44%), Gaps = 124/899 (13%)
Query: 46 RLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKEL 105
RL+ K+VL+V DDV + E + WL GS +IIT+RDKQV CG++ IYEV+ L
Sbjct: 243 RLNSKRVLVVLDDVRNALVGESFLEGFDWLGPGSLIIITSRDKQVFCLCGINQIYEVQGL 302
Query: 106 FDDDARMLFSRYA-FGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRR-IKDWES 163
+ +AR LF A ++ ELS ++I YA G PLAI V GR L G++ + + E+
Sbjct: 303 NEKEARQLFLLSASIKEDMGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMET 362
Query: 164 TIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEI 223
K+KR P I K ++D L D E+N+FLDIA FF+GE+ + VI+ L+GCGF +
Sbjct: 363 AFLKLKRRPPFKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHV 422
Query: 224 GISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNN- 282
I VLVDKCL+ I N++ +H L Q++GREI+ E+++ +R RLW I +L N
Sbjct: 423 EIDVLVDKCLVTISENRVWLHKLTQDIGREIINGETVQIE-RRRRLWEPWSIKYLLEYNE 481
Query: 283 --------------TGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENV 328
G+E IEG+ LD S ++ L +F NM LR K Y S+ V
Sbjct: 482 HKANGEPKTTFKRAQGSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSN--PEV 538
Query: 329 NKVHNFR--GLES--TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRL 384
+ V NF L S ELR L W PLKSL P +LV + MP+S +++LW G + L
Sbjct: 539 HPVINFPTGSLHSLPNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNL 598
Query: 385 VNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS 444
L+ I L HS HL I DL A NLE ++ QGCT L+ + L +L V+NL C
Sbjct: 599 EMLRTIRLCHSHHLVDIDDLLKAENLEVIDLQGCT-RLQNFPAAGRLLRLRVVNLSGCIK 657
Query: 445 LTSL------STSIHLGSLKKLILSGCSN----------LMSFPELSCNIEELSLDGTAI 488
+ S+ +HL L L + L P LS +E L T++
Sbjct: 658 IKSVLEIPPNIEKLHLQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERL----TSL 713
Query: 489 QEFPSSIERLSSLILLNLGNCLRLEGLPS------KICKLKSLERLNLAEA----LKELK 538
E SS + L LI L L +C L+ LP+ + L LN + LK+L
Sbjct: 714 LESNSSCQDLGKLICLELKDCSCLQSLPNMANLDLNVLDLSGCSSLNSIQGFPRFLKQLY 773
Query: 539 AEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP 598
G AIREVP S E H LP L L L L+ C +E
Sbjct: 774 LGGTAIREVPQLPQ--------SLEILNAHGSCLRSLPNMANLEFLKVLDLSGCSELETI 825
Query: 599 ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHC 658
+ F R L L+ G + L +P+LP L + AH
Sbjct: 826 Q----------------GFPR------NLKELYFAGTT----LREVPQLPLSLEVLNAHG 859
Query: 659 CSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELE 718
S E L + F N F L + + + + ++ + +EL
Sbjct: 860 SDS-EKL-------------PMHYKFNNFFDLSQQVVNDFLLKTLTYVKHIPRGYTQELI 905
Query: 719 KQHCEVPRGMICFPG-SELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRDHH 777
+ P P + F QS GSS L W + VGF + V F + +
Sbjct: 906 NK---APTFSFSAPSHTNQNATFDLQS-GSSVMTRLNHSWRN-TLVGFGMLVEVAFPEDY 960
Query: 778 DDGGGFQVFCECKLKTEDGL-CRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYM---FS 833
D + C C+ ++G CR+ W+ P+ + DH F+ D M
Sbjct: 961 CDATDVGISCVCRWSNKEGRSCRIE-RKFHCWAPWQVVPK-VRKDHTFVFSDVNMRPSTG 1018
Query: 834 DGFDEYYYSDEVFIQFY--------LEDCCEVTKCGIHLLYAQDFSDSTEDSVWNFSSD 884
+G D ++ V +F+ L D V +CG+ ++ + S E+ S D
Sbjct: 1019 EGNDPDIWAGLVVFEFFPINQQTKCLNDRFTVRRCGVRVINVATGNTSLENIALVLSLD 1077
|
Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum. Arabidopsis thaliana (taxid: 3702) |
| >sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (777), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 198/554 (35%), Positives = 315/554 (56%), Gaps = 21/554 (3%)
Query: 1 IQNVSEESEKSG----GLA-HLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIV 55
++NV E ++G GL HL+Q LS +LD ++ + L +RL +KVLI+
Sbjct: 239 MENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDLRVR----HLGAIEERLKSQKVLII 294
Query: 56 FDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFS 115
DDV EQ++ L W SR+++T ++KQ+L + ++ +Y+V +A +F
Sbjct: 295 LDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVSHDINHMYQVAYPSKQEALTIFC 354
Query: 116 RYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVD 175
++AF ++ P+ L+ + A +PLA++VLG F+ G+ ++WE ++ +K +
Sbjct: 355 QHAFKQSSPSDDLKHLAIEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGE 414
Query: 176 IQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFS-AEIGISVLVDKCLM 234
++KVLKV +DGL D E++LFL IA F G+ ++ + + + + G+ VL DK L+
Sbjct: 415 VEKVLKVGYDGLHDHEKDLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLI 474
Query: 235 VILNN-KIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISL 293
N +I MH LL+++G+E+VR++SI +PGKR L + ++ VL+NNTGT + GISL
Sbjct: 475 QKFENGRIEMHSLLRQLGKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISL 534
Query: 294 DMSKVKE-IHLNAGSFTNMHKLRFFKFYSSHYGENVNKVH---NFRGLES-TELRYLQWH 348
DM ++KE ++++ +F M L + KFY S ++ KV GL +LR L W
Sbjct: 535 DMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSYLPQLRLLHWD 594
Query: 349 GCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLAT 408
PL+ S PE LV L M HS +K+LW GVQ L NL+ +NL+ S +L +P+L AT
Sbjct: 595 AYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEAT 654
Query: 409 NLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNL 468
L L+ C L+E SSI+ L L++L + C+ L + T+I+L SL+ L C+ L
Sbjct: 655 KLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRL 714
Query: 469 MSFPELSCNIEELSLDGTAIQEFPSSIERLSSL--ILLNLGNCLRLEGLP---SKICKLK 523
+FPE+S NI L+L GTAI E P S++ S + I + RL +P K+C +
Sbjct: 715 QTFPEISTNIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVKRLVHVPYVLEKLCLRE 774
Query: 524 SLERLNLAEALKEL 537
+ E + LK L
Sbjct: 775 NKELETIPRYLKYL 788
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 231/714 (32%), Positives = 355/714 (49%), Gaps = 69/714 (9%)
Query: 8 SEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEF 67
S+ SG + LLS IL ++ I +RL ++KVLI+ DDV + E ++
Sbjct: 247 SDVSGMKLRWEKELLSEILGQKDIKIE----HFGVVEQRLKQQKVLILLDDVDSLEFLKT 302
Query: 68 LIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVG 127
L+G W GSR+I+ +D+Q+LK +D IYEV+ + A + R AFGK+ P
Sbjct: 303 LVGKAEWFGSGSRIIVITQDRQLLKAHEIDLIYEVEFPSEHLALTMLCRSAFGKDSPPDD 362
Query: 128 YMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGL 187
+ EL+ ++ K A +PL + VLG L GR + W + +++ + DI K L+VS+D L
Sbjct: 363 FKELAFEVAKLAGNLPLGLSVLGSSLKGRTKEWWMEMMPRLRNGLNGDIMKTLRVSYDRL 422
Query: 188 DDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVIL-NNKIMMHDL 246
++Q++FL IA F G + V L +G ++L +K L+ I + I MH+L
Sbjct: 423 HQKDQDMFLYIACLFNGFEVSYVKDLLKD-----NVGFTMLTEKSLIRITPDGYIEMHNL 477
Query: 247 LQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSK---VKEIHL 303
L+++GREI R +S +PGKR L + EDI+ V+T TGTE + GI L + + + +
Sbjct: 478 LEKLGREIDRAKSKGNPGKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYFSTRPLLI 537
Query: 304 NAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPEN 363
+ SF M L++ + +YG+ + +LR L W CPLKSL S E
Sbjct: 538 DKESFKGMRNLQYLEI--GYYGDLPQSLVYL----PLKLRLLDWDDCPLKSLPSTFKAEY 591
Query: 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE 423
LV+L M +S +++LW+G L +LK +NL +S +L +IPDLSLA NLE L+ GC L+
Sbjct: 592 LVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVT 651
Query: 424 THSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSL 483
SSIQ KL+ L++ C+ L S T ++L SL+ L L+GC NL +FP + ++
Sbjct: 652 LPSSIQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMGCSDVDF 711
Query: 484 ----------DGTAIQEFPSSIE-------------RLSSLILLNLGNCLRLEGLPSKIC 520
D + P+ ++ R L LN+ + E L I
Sbjct: 712 PEGRNEIVVEDCFWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRG-YKHEKLWEGIQ 770
Query: 521 KLKSLERLNLAEA---------LKELKAEGI------AIREVPSSIACLKNLGRLSFESF 565
L SLE ++L+E+ K K E + ++ +PS+I L L RL +
Sbjct: 771 SLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRLEMK-- 828
Query: 566 MCHEQMGL-LLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSI-LLLEKNNFERIPES 623
E GL +LP L+SL L L+ C + +S+ + L LE E IP +
Sbjct: 829 ---ECTGLEVLPTDVNLSSLETLDLSGCSSL---RSFPLISTNIVWLYLENTAIEEIPST 882
Query: 624 IIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSW 677
I L L L + C L LP +LS +E S +L ++ W
Sbjct: 883 IGNLHRLVRLEMKKCTGLEVLPT-DVNLSSLETLDLSGCSSLRSFPLISESIKW 935
|
Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 246/851 (28%), Positives = 392/851 (46%), Gaps = 119/851 (13%)
Query: 46 RLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKEL 105
+L K++L+V DDV S E + W GS +IIT+ DKQV C ++ IY V+ L
Sbjct: 267 KLYDKRILVVLDDVRDSLAAESFLKRLDWFGSGSLIIITSVDKQVFAFCQINQIYTVQGL 326
Query: 106 FDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTI 165
+A LFS+ FG N P +LS K+I Y G PLA+ + GR L G++ + E+
Sbjct: 327 NVHEALQLFSQSVFGINEPEQNDRKLSMKVIDYVNGNPLALSIYGRELMGKK-SEMETAF 385
Query: 166 KKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGI 225
++K P + IQ VLK ++ L D E+N+ LDIA FFKGE + V++ L+ + + I
Sbjct: 386 FELKHCPPLKIQDVLKNAYSALSDNEKNIVLDIAFFFKGETVNYVMQLLEESHYFPRLAI 445
Query: 226 SVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDI-----YNVLT 280
VLVDKC++ I N + M++L+Q+ +EI E +R+W I Y+ L
Sbjct: 446 DVLVDKCVLTISENTVQMNNLIQDTCQEIFNGEI----ETCTRMWEPSRIRYLLEYDELE 501
Query: 281 NNTGTEA----------IEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNK 330
+ T+A IE I LD S VK + +F NM L+F K Y+S + ++
Sbjct: 502 GSGETKAMPKSGLVAEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIYNS-CSKYISG 559
Query: 331 VHNFRGLES--TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLK 388
++ +GL+S ELR L W PL+SL +LV L MP+S + +L V+ LV LK
Sbjct: 560 LNFPKGLDSLPYELRLLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLK 619
Query: 389 HINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSL 448
+ LSHS L + L A N+E ++ QGCT L
Sbjct: 620 RLILSHSLQLVECDILIYAQNIELIDLQGCT------------------------GLQRF 655
Query: 449 STSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGN 508
+ L +L+ + LSGC+ + F + NIEEL L GT I+E P + N +
Sbjct: 656 PDTSQLQNLRVVNLSGCTEIKCFSGVPPNIEELHLQGTRIREIP----------IFNATH 705
Query: 509 CLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCH 568
P K+ KL + NL E +++ + C+ NL ++ + +
Sbjct: 706 -------PPKV-KLDRKKLWNLLENFSDVEH---------IDLECVTNLATVTSNNHV-- 746
Query: 569 EQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLS 628
MG L+ ++ S + LP+ + S + + L + E+I L
Sbjct: 747 --MGKLVCLNMKYCS---------NLRGLPDMVSLESLKVLYLSGCSELEKIMGFPRNLK 795
Query: 629 HLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCF 688
L+ G + + LP+LP L + AH C L++ +++ F Q + F F NC+
Sbjct: 796 KLYVGGTA----IRELPQLPNSLEFLNAHGCKHLKS---INLDFEQL---PRHFIFSNCY 845
Query: 689 KLDKNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPRGMICFPGSELPEWFMFQSMGSS 748
+ + E ++ + A A EEL K P +IC P G +
Sbjct: 846 RFSSQVIAEFVEKGL--VASLARAKQEELIK----APEVIICIPMDTRQRSSFRLQAGRN 899
Query: 749 ATFNLPPDWFSYNFVGFALCAVVGFRDHHDDGGGFQVFCECKLKTEDGLC-RVAVGHLTG 807
A +L P W GF++ VV F+D + + G ++ C KT + R+
Sbjct: 900 AMTDLVP-WMQKPISGFSMSVVVSFQDDYHNDVGLRIRCVGTWKTWNNQPDRIVERFFQC 958
Query: 808 WSDGYRGPRYIGSDHVFLGFDFYMFSDGFDEYY---YSDEVFIQFY--------LEDCCE 856
W+ P+ + +DH+F+ +D M +E + ++ EV +F+ L C+
Sbjct: 959 WAPT-EAPKVV-ADHIFVLYDTKMHPSDSEENHISMWAHEVKFEFHTVSGENNPLGASCK 1016
Query: 857 VTKCGIHLLYA 867
VT+CG+ ++ A
Sbjct: 1017 VTECGVEVITA 1027
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 146/568 (25%), Positives = 248/568 (43%), Gaps = 103/568 (18%)
Query: 52 VLIVFDDV---STSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDD 108
+L+V DDV + S +F I + ++++T+R D+ Y +K L DD
Sbjct: 272 ILLVLDDVWRGADSFLQKFQIK-----LPNYKILVTSR----FDFPSFDSNYRLKPLEDD 322
Query: 109 DARMLFSRYAFGK-NYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIK- 166
DAR L +A N Y +L KI+K G P+ I+V+G L GR + W+ ++
Sbjct: 323 DARALLIHWASRPCNTSPDEYEDLLQKILKRCNGFPIVIEVVGVSLKGRSLNTWKGQVES 382
Query: 167 -----KIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGED-KDCVI--KFLDGCG 218
KI P+ + + L+ SFD LD + FLD+ SF + + + VI +++ G
Sbjct: 383 WSEGEKILGKPYPTVLECLQPSFDALDPNLKECFLDMGSFLEDQKIRASVIIDMWVELYG 442
Query: 219 FSAEIGISVLVDKC------LMVILNNK----------IMMHDLLQEMGREIVRQESIKD 262
+ I L D L+ + N+ + HD+L+E+ + Q K+
Sbjct: 443 KGSSILYMYLEDLASQNLLKLVPLGTNEHEDGFYNDFLVTQHDILRELA---ICQSEFKE 499
Query: 263 PGKRSRLWHHEDIYNVLTN---NTGTEAIEGISLD-MSKVKEIHLNAGSFTNMHKLRFFK 318
+R RL + E + N + NT ++ IS D + K + ++ + +
Sbjct: 500 NLERKRL-NLEILENTFPDWCLNTINASLLSISTDDLFSSKWLEMDCPNVEAL----VLN 554
Query: 319 FYSSHYGENVNKVHNF-RGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQL 377
SS Y + +F G++ ++ + HG LS+
Sbjct: 555 LSSSDYA-----LPSFISGMKKLKVLTITNHGFYPARLSN-------------------- 589
Query: 378 WKGVQRLVNLKHINLSH-SEHLTKIPDLSLATNLESLNFQGCT---CLLETHSSI--QYL 431
+ + L NLK I L S L IP L L++ L+ L+ C+ +T + L
Sbjct: 590 FSCLSSLPNLKRIRLEKVSITLLDIPQLQLSS-LKKLSLVMCSFGEVFYDTEDIVVSNAL 648
Query: 432 NKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSL----DGT 486
+KL +++ +C L L I + SLK L ++ C+ L PE N+ L +
Sbjct: 649 SKLQEIDIDYCYDLDELPYWISEIVSLKTLSITNCNKLSQLPEAIGNLSRLEVLRLCSSM 708
Query: 487 AIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE 546
+ E P + E LS+L L++ +CL L LP +I KL++L+++++ K G E
Sbjct: 709 NLSELPEATEGLSNLRFLDISHCLGLRKLPQEIGKLQNLKKISMR------KCSGC---E 759
Query: 547 VPSSIACLKNLGRLSFESFMCHEQMGLL 574
+P S+ L+NL C E+ GLL
Sbjct: 760 LPESVTNLENL------EVKCDEETGLL 781
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FW44|ADR1_ARATH Disease resistance protein ADR1 OS=Arabidopsis thaliana GN=ADR1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 121/513 (23%), Positives = 228/513 (44%), Gaps = 73/513 (14%)
Query: 50 KKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDD 109
++ L++ DDV T E ++ L+ ++GS ++ +R K T Y V+ L D+
Sbjct: 248 QRKLVILDDVWTRESLDRLMSK----IRGSTTLVVSRSKL----ADPRTTYNVELLKKDE 299
Query: 110 ARMLFSRYAFGKNYPNVGYME-LSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKI 168
A L AF + P + + L +++ KG+PL++KVLG L + + WE +K++
Sbjct: 300 AMSLLCLCAFEQKSPPSPFNKYLVKQVVDECKGLPLSLKVLGASLKNKPERYWEGVVKRL 359
Query: 169 KRIPHVDIQKVLKV------SFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGC----- 217
R D +V S + LD + ++ FLD+ +F EDK + L
Sbjct: 360 LRGEAADETHESRVFAHMEESLENLDPKIRDCFLDMGAF--PEDKKIPLDLLTSVWVERH 417
Query: 218 GFSAEIGISV---LVDKCLMVILNNK-------------IMMHDLLQEMG------REIV 255
E S L DK L+ I+NN + HD+L+++ ++
Sbjct: 418 DIDEETAFSFVLRLADKNLLTIVNNPRFGDVHIGYYDVFVTQHDVLRDLALHMSNRVDVN 477
Query: 256 RQESIKDPGKR---SRLW--HHEDIYN--VLTNNTG-TEAIEGISLDMSKVKEIHLNAGS 307
R+E + P R W + ++ ++ +++ +TG + + +D+ K + + LN S
Sbjct: 478 RRERLLMPKTEPVLPREWEKNKDEPFDAKIVSLHTGEMDEMNWFDMDLPKAEVLILNFSS 537
Query: 308 --------FTNMHKLRFFKFYSSHYGENVNKVHNFRGLES-TELRYLQWHGCPLKSLSS- 357
M +LR ++ G + ++H F + +LR L + L+S
Sbjct: 538 DNYVLPPFIGKMSRLRVLVIINN--GMSPARLHGFSIFANLAKLRSLWLKRVHVPELTSC 595
Query: 358 KIPPEN-----LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLES 412
IP +N L+ ++ +S ++ + + +L + + H + L ++ + T+L S
Sbjct: 596 TIPLKNLHKIHLIFCKVKNSFVQTSFDISKIFPSLSDLTIDHCDDLLELKSIFGITSLNS 655
Query: 413 LNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSF 471
L+ C +LE ++ + L L L C L SL + L LK + +S C +L+S
Sbjct: 656 LSITNCPRILELPKNLSNVQSLERLRLYACPELISLPVEVCELPCLKYVDISQCVSLVSL 715
Query: 472 PE---LSCNIEELSLDGTAIQEFPSSIERLSSL 501
PE ++E++ + ++ PSS+ L SL
Sbjct: 716 PEKFGKLGSLEKIDMRECSLLGLPSSVAALVSL 748
|
Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner. Also mediates resistance against Erysiphe cichoracearum is both salicylic acid-dependent and partially NPR1-dependent. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 127/551 (23%), Positives = 228/551 (41%), Gaps = 98/551 (17%)
Query: 53 LIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARM 112
L++ DDV T E ++ L+ N + G+ ++ ++ K V T Y+V+ L + DA
Sbjct: 86 LVILDDVRTRESLDQLMFN----IPGTTTLVVSQSKLV----DPRTTYDVELLNEHDATS 137
Query: 113 LFSRYAFG-KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRI 171
LF AF K+ P+ L +++ +KG+PL++KVLG L R W ++++ R
Sbjct: 138 LFCLSAFNQKSVPSGFSKSLVKQVVGESKGLPLSLKVLGASLNDRPETYWAIAVERLSRG 197
Query: 172 PHVD------IQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGI 225
VD + ++ + + LD + + FLD+ +F +G+ +I +
Sbjct: 198 EPVDETHESKVFAQIEATLENLDPKTKECFLDMGAFPEGK----------------KIPV 241
Query: 226 SVLVDKCLMVILNNKIMMHDLLQEMGREIVRQES-------IKDPGKRSRLWHHEDIYNV 278
VL+ N + +HDL +++ + +KDP + + DI+
Sbjct: 242 DVLI--------NMLVKIHDLEDAAAFDVLVDLANRNLLTLVKDPTFVAMGTSYYDIFV- 292
Query: 279 LTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFK---FYSSHYGENVNKVHNFR 335
T + + ++L ++ N G + +L K S + + ++ +N R
Sbjct: 293 ----TQHDVLRDVALHLT-------NRGKVSRRDRLLMPKRETMLPSEWERSNDEPYNAR 341
Query: 336 GL-----ESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHI 390
+ E TE+ + + L +N V +P K V ++N
Sbjct: 342 VVSIHTGEMTEMDWFDMDFPKAEVLIVNFSSDNYV---LPPFIAKMGMLRVFVIIN---- 394
Query: 391 NLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSL-S 449
N + HL P + TNL SL + + E SS+ L L L L C+ S
Sbjct: 395 NGTSPAHLHDFPIPTSLTNLRSLWLERVH-VPELSSSMIPLKNLHKLYLIICKINNSFDQ 453
Query: 450 TSIHLGS----LKKLILSGCSNLMSFPELSCNIEELS----LDGTAIQEFPSSIERLSSL 501
T+I + L + + C +L P C I L+ + I+E P +I +L +L
Sbjct: 454 TAIDIAQIFPKLTDITIDYCDDLAELPSTICGITSLNSISITNCPNIKELPKNISKLQAL 513
Query: 502 ILLNLGNCLRLEGLPSKICKLKSL---------------ERLNLAEALKELKAEGIAIRE 546
LL L C L+ LP +IC+L L E++ L+++ ++
Sbjct: 514 QLLRLYACPELKSLPVEICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDMRECSLSS 573
Query: 547 VPSSIACLKNL 557
+PSS L +L
Sbjct: 574 IPSSAVSLTSL 584
|
Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 909 | ||||||
| 359496026 | 1250 | PREDICTED: TMV resistance protein N-like | 0.920 | 0.669 | 0.429 | 1e-178 | |
| 225460354 | 1174 | PREDICTED: TMV resistance protein N-like | 0.929 | 0.719 | 0.426 | 1e-170 | |
| 255537139 | 1137 | leucine-rich repeat-containing protein, | 0.895 | 0.715 | 0.419 | 1e-169 | |
| 359493273 | 1233 | PREDICTED: TMV resistance protein N-like | 0.961 | 0.708 | 0.413 | 1e-169 | |
| 359493483 | 1274 | PREDICTED: TMV resistance protein N-like | 0.977 | 0.697 | 0.405 | 1e-168 | |
| 359493487 | 1162 | PREDICTED: TMV resistance protein N-like | 0.892 | 0.697 | 0.422 | 1e-167 | |
| 147768286 | 1206 | hypothetical protein VITISV_033530 [Viti | 0.938 | 0.707 | 0.406 | 1e-165 | |
| 224127917 | 1470 | tir-nbs-lrr resistance protein [Populus | 0.928 | 0.574 | 0.391 | 1e-162 | |
| 224145016 | 1254 | tir-nbs-lrr resistance protein [Populus | 0.941 | 0.682 | 0.385 | 1e-158 | |
| 359486071 | 1261 | PREDICTED: TMV resistance protein N-like | 0.951 | 0.685 | 0.375 | 1e-157 |
| >gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 403/938 (42%), Positives = 540/938 (57%), Gaps = 101/938 (10%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ NV E+SEK G L L++ LLS +L++G +SI IGL F RL K+VLIV DD
Sbjct: 249 LSNVREDSEKRG-LVKLQEELLSRLLEEGKISISTVDIGLAFIKTRLRFKRVLIVLDDAH 307
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
+Q+E+L G W GSR+IIT RD +L GV+ +YEV L ++DA LFSR+AF
Sbjct: 308 NLQQLEYLAGKHDWFGPGSRIIITTRDVHLLNKVGVNGVYEVAHLNNNDAVALFSRHAFE 367
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
+++P YMELSN + YAKG+PLA+KVLG FL + +W+S + K++ PH+DI+ VL
Sbjct: 368 EDHPTEDYMELSNYAVSYAKGLPLALKVLGSFLFSKSKLEWKSQLDKLQINPHMDIESVL 427
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNK 240
+VSFDGLDD EQ++FLD+A FFKGEDKD VIK LD CGF IGI VL+DK L+ +++NK
Sbjct: 428 RVSFDGLDDTEQDIFLDVACFFKGEDKDYVIKILDSCGFYPSIGIRVLIDKSLITVVHNK 487
Query: 241 IMMHDLLQEMGREIVRQESIK--------DPGKRSRLWHHEDIYNVLTNNTGTEAIEGIS 292
+ MHDLLQEMG +IVR+ S K DPGK SRLW ED+Y+VLT TGTE IEGI
Sbjct: 488 LWMHDLLQEMGWDIVRKTSHKNPSKRRRLDPGKHSRLWLQEDVYDVLTEKTGTENIEGIF 547
Query: 293 LDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYG---ENVNKVHNFRG-------LESTEL 342
L++ +KEIH +F M KLR K Y+SH E ++ N++ S +L
Sbjct: 548 LNLYGLKEIHYTTEAFAEMKKLRLLKVYNSHNSGDFEYASRNENYKRPFSQDFEFPSNKL 607
Query: 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP 402
RYL WH PLKSL S P+NLV L + +++LWKGV+ + L+ I+LSHS++L + P
Sbjct: 608 RYLYWHRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHMEKLECIDLSHSQYLVRTP 667
Query: 403 DLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLIL 462
D S NLE L F+GCT L E H S+ L+KL+ LNLK C++L +SI L SLK LIL
Sbjct: 668 DFSGIPNLERLIFEGCTDLREVHQSLGVLSKLIFLNLKDCKNLQCFPSSIELESLKVLIL 727
Query: 463 SGCSNLMSFPELSCNIE---ELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI 519
SGCS L +FPE+ N+E EL LDGTAI+E P S+E L+ L+LLNL NC RL LPS I
Sbjct: 728 SGCSKLDNFPEILENMEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCERLITLPSSI 787
Query: 520 CKLKSLERLNLA---------------EALKELKAEGIAIREVPSSIACLKNLGRLSFE- 563
C LKSL L L+ E L EL A+G A+ + PSSI L+NL LSF+
Sbjct: 788 CNLKSLSTLTLSGCSQLEKLPENLGNLECLVELVADGSAVIQPPSSIVLLRNLKVLSFQG 847
Query: 564 --------------SFMC----HEQMGLLLPISFGLTSLTYLRLTDCGIIE--LPECLG- 602
S +C + G LP GL SL L L+DC I E LP LG
Sbjct: 848 CNGSPSSRWNSRFWSMLCLRRISDSTGFRLPSLSGLCSLKQLNLSDCNIKEGALPNDLGG 907
Query: 603 QLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSL 662
LSS L L+ N+F +P I +L +L +L + C+RL LP LP +++ I A C+SL
Sbjct: 908 YLSSLEYLNLKGNDFVTLPTGISKLCNLKALYLGCCKRLQELPMLPPNINRINAQNCTSL 967
Query: 663 EALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELE-KQH 721
E LSGLS W F N F+ + W +E +
Sbjct: 968 ETLSGLS----APCW----LAFTNSFRQN---------------------WGQETYLAEV 998
Query: 722 CEVPRGMICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRDHHDDGG 781
+P+ PG+ +PEWF Q MG S LP W++ NF+GFA+C V ++ +
Sbjct: 999 SRIPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDNFLGFAMCIVFALKEPNQCSR 1058
Query: 782 GFQVFCECKLKTEDGLCRVAVG----HLTGWSDGYRGPRYIGSDHVFLGF--DFYMFSDG 835
G + C+L++ D L +G H+ W G ++ SDH++LG+ +F + D
Sbjct: 1059 GAML---CELESSD-LDPSNLGCFLDHIV-WEGHSDGDGFVESDHLWLGYHPNFPIKKDD 1113
Query: 836 FDEYYYSDEVFIQFYLEDCC-EVTKCGIHLLYAQDFSD 872
D + F + EV CG L+Y +D +D
Sbjct: 1114 MDWPNKLSHIKASFVIAGIPHEVKWCGFRLVYMEDLND 1151
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 391/916 (42%), Positives = 529/916 (57%), Gaps = 71/916 (7%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ NV EES++ G LA+L++ LLS I GN++ G + G+NF +RL +KVLIV DDV
Sbjct: 253 LPNVREESQRHG-LAYLQEELLSQI-SGGNLNKGNFNRGINFIKERLHSRKVLIVLDDVD 310
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
EQ+E L GN W GSR+IIT +DK +L GVD IY V+ L ++A LF AF
Sbjct: 311 MYEQLEVLAGNHDWFGAGSRIIITTKDKTLLNMHGVDAIYNVEGLKYNEALKLFCWCAFK 370
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
+ P YM+L +KY +G+PLAIKVLG F+ + I +W+S + K+KRIPH D+QKVL
Sbjct: 371 HDLPTADYMQLCKNFVKYIEGLPLAIKVLGSFVKNKTIDEWKSALDKLKRIPHKDVQKVL 430
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNK 240
++SFDGLDD ++++FLDIA FFKG+DKD V K L+ C F I VL + L+++ NNK
Sbjct: 431 RISFDGLDDNQKDIFLDIACFFKGQDKDFVAKILESCDFFPANDIRVLEENSLILVSNNK 490
Query: 241 IMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKE 300
+ MH+LLQEMG EIVRQE++K PGKRSRLW H+++ +VLT NTGTEA+EG+ LD+S KE
Sbjct: 491 LCMHNLLQEMGWEIVRQENVKYPGKRSRLWFHDEVNHVLTTNTGTEAVEGLVLDLSASKE 550
Query: 301 IHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIP 360
+H +AG+FT M++LR +FY NV N + L S LR L WH PLKSL S
Sbjct: 551 LHFSAGAFTEMNRLRVLRFY------NVKMNGNLKFL-SNNLRSLYWHEYPLKSLPSNFH 603
Query: 361 PENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420
P+ LV L M S ++QLWKG + LK I LSHS++LT+ PD S A NLE L +GCT
Sbjct: 604 PKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSGAPNLERLILEGCTS 663
Query: 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIE- 479
+++ H SI L KL+ LNL+ C++L S ++SIH+ SL+ L LSGCS L FPE+ N++
Sbjct: 664 MVKVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTLSGCSKLKKFPEMLENMKS 723
Query: 480 --ELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLA------ 531
+L LD TA++E PSSI RL+ L+LLNL NC +L LP +CKL SL+ L LA
Sbjct: 724 LRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILTLAGCSELK 783
Query: 532 ---------EALKELKAEGIAIREVPSSIACLKNLGRLSFE---------SFMCHEQMGL 573
L L A+G I+EVP SI L NL LS S + L
Sbjct: 784 KLPDELGSLRCLVNLNADGSGIQEVPPSITLLTNLQVLSLAGCKKRNVVFSLWSSPTVCL 843
Query: 574 LLPISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLF 631
L L+S+ L L+DC + E LP L LSS L L KNNF IP S+ +LS L
Sbjct: 844 QLRSLLNLSSVKTLSLSDCNLSEGALPSDLSSLSSLESLDLSKNNFITIPASLNRLSQLL 903
Query: 632 SLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLD 691
L +SHC+ L S+PELP + + A C SLE S LS ++ N F F +CF+L
Sbjct: 904 YLSLSHCKSLQSVPELPSTIQKVYADHCPSLETFS-LSACASR-KLNQLNFTFSDCFRLV 961
Query: 692 KNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPRG--MICFPGSELPEWFMFQSMGSSA 749
+NE + + + +QL ++ + VP + PGS +PEWF+ Q+MGSS
Sbjct: 962 ENEHSDTVGAILQGIQLASSIPKFVDANKGSPVPYNDFHVIVPGSSIPEWFIHQNMGSSV 1021
Query: 750 TFNLPPDWFSYNFVGFALCAVVGFRDHHDDGGGFQVFCECKLKTEDGLCRVAVGHLTGWS 809
T LPP W++ +G A+CAV F D G Q G + L WS
Sbjct: 1022 TVELPPHWYNAKLMGLAVCAV--FHADPIDWGYLQY------SLYRGEHKYDSYMLQTWS 1073
Query: 810 DGYRGPRYIGSDHVFLGFDFYMFSDGFDEYYYSDE------VFIQFYLEDC-------CE 856
+ DHV+ G+ + + D ++ + +F ++ C
Sbjct: 1074 P-------MKGDHVWFGYQSLVGQED-DRMWFGERSGTLKILFSGHCIKSCIVCVQPEVV 1125
Query: 857 VTKCGIHLLYAQDFSD 872
V KCG+ L Y Q D
Sbjct: 1126 VKKCGVRLAYEQGDKD 1141
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 376/897 (41%), Positives = 522/897 (58%), Gaps = 83/897 (9%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKR-LSRKKVLIVFDDV 59
+ NV EK+GGLA L++ LLS L+ + I P+IG +F K+ L ++VLIV DD
Sbjct: 239 LANVRGNFEKNGGLARLQEELLSKTLEKRDFKIDTPNIGYSFWVKQMLKHRRVLIVVDDA 298
Query: 60 STSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAF 119
+ SEQ++ L+G+ W GSR+I+T+RDKQVL VD IYEVKEL +A LF++ F
Sbjct: 299 NDSEQLDLLVGSHDWFGPGSRIIVTSRDKQVLTKI-VDDIYEVKELVHHEALQLFNQTTF 357
Query: 120 GKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKV 179
K Y LS+ +I+YAKGVPLA+KVLG FL G+ +WES + K+K+ PH Q V
Sbjct: 358 KKKCVPEDYSYLSDLVIEYAKGVPLALKVLGSFLFGKSKTEWESALDKLKKAPHRATQNV 417
Query: 180 LKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNN 239
LK+S+DGLD EE+N+FLDIA FF+GE + V K LDGCGFS +IG+ +LVDK L+ ILN+
Sbjct: 418 LKISYDGLDAEEKNIFLDIACFFRGESVEMVTKILDGCGFSTKIGLCLLVDKSLITILND 477
Query: 240 KIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVK 299
K+ MHDLLQEMG+EIV QES K P +R+RLW+HEDI +V + N GTE IEG+ L+ S +
Sbjct: 478 KVEMHDLLQEMGKEIVLQES-KQPSQRTRLWNHEDILHVFSRNLGTETIEGMCLNTSMIN 536
Query: 300 EIHLNAGSFTNMHKLRFFKFYSS--HYG-ENVNKVHNFRGLE--STELRYLQWHGCPLKS 354
+I LN+ +F M+ LRF KFY S H G + K+ +GL+ S ELRYL WHG PLKS
Sbjct: 537 KIELNSNAFGRMYNLRFLKFYQSYIHGGFKECTKIRLPQGLDSLSNELRYLHWHGYPLKS 596
Query: 355 LSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLN 414
L ++I NLV L +P+S +K+LWKG + L LK I+LS+S+ L +I +L+ A+NL +
Sbjct: 597 LPARIHLMNLVVLVLPYSKVKRLWKGCKDLKKLKVIDLSYSQALIRITELTTASNLSYMK 656
Query: 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE 473
GC L S+ ++ L L + +C L SL +SI L SL+ L L GCSNL SFPE
Sbjct: 657 LSGCKNLRSMPSTTRW-KSLSTLEMNYCTKLESLPSSICKLKSLESLSLCGCSNLQSFPE 715
Query: 474 LSCNIEELS---LDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530
+ +++ L L+GTAI+E PSSIERL L + L NC L LP C LK+L L L
Sbjct: 716 ILESMDRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLPESFCNLKALYWLFL 775
Query: 531 AEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLT 590
K + ++P ++ LT+L L +
Sbjct: 776 TFCPK--------LEKLPEKLS---------------------------NLTTLEDLSVG 800
Query: 591 DCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCD 650
C +++LP + LS S L L N F+++P S L +L L IS C RL SLPE+P
Sbjct: 801 VCNLLKLPSHMNHLSCISKLDLSGNYFDQLP-SFKYLLNLRCLDISSCRRLRSLPEVPHS 859
Query: 651 LSDIEAHCCSSLEALSGLSILFTQTSWNSQFF----YFVNCFKLDKNELKEIIKDAQRKM 706
L+DI+AH C SLE +SGL +F Q + F+ F +CFK+D++ + + DAQ
Sbjct: 860 LTDIDAHDCRSLETISGLKQIF-QLKYTHTFYDKKIIFTSCFKMDESAWSDFLADAQ--- 915
Query: 707 QLKATAWWEELEKQHCEVPRGMICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFA 766
W +++ + + I +PGS++P+WF +QS GSS L P +N +GF
Sbjct: 916 -----FWIQKVAMRAKDEESFSIWYPGSKIPKWFGYQSEGSSIVIQLHPRSHKHNLLGFT 970
Query: 767 LCAVVGFRDHHD-DGGGFQVFCECKLKTEDGL---CRVAVG---HLTGWSDGYRGPRYIG 819
LC V+ F D + F V C +LK G C+ H++G +Y+G
Sbjct: 971 LCVVLAFEDEFEYHNSFFDVLCVYQLKNYRGEYTDCKEVYSSRTHVSG------KNKYVG 1024
Query: 820 SDHVFLGFDFYMFSDGFDEYYYSDEVFIQFYL---EDCC----EVTKCGIHLLYAQD 869
SDHV L +D S +E Y++ F +FY E CC V KC LY+++
Sbjct: 1025 SDHVILFYDPNFSSTEANELSYNEASF-EFYWQNNESCCMQSSMVKKCAAIPLYSRE 1080
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 392/949 (41%), Positives = 538/949 (56%), Gaps = 75/949 (7%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ N+ E S K+ GL L++ LL IL + I G+N RL KKVLI+ DDV
Sbjct: 246 LANIREVS-KNCGLLPLQKQLLGDILMGWSQRISNLDEGINVLMDRLHSKKVLIILDDVD 304
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
Q+E L GN W GSR++IT RDK +L GV IYE KEL ++A LFS+YAF
Sbjct: 305 DLNQLESLAGNVDWFGIGSRIVITTRDKHLLNVHGVSEIYEAKELEPEEALQLFSQYAFK 364
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
+ P+ YM LS+ ++ YAKG+PLA+KVLG FL + I +WES + K+K+ + +Q VL
Sbjct: 365 RKSPDKDYMNLSDNVVHYAKGLPLALKVLGSFLFSKTILEWESELHKLKKELNTKVQDVL 424
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNK 240
++SFDGLD ++ +FLD+A FFKG++ D VIK LDGCGF A+ GI VL D+CL+ +L+N+
Sbjct: 425 RISFDGLDFTQKEIFLDLACFFKGQEYDFVIKILDGCGFHAKSGIRVLSDRCLIDLLDNR 484
Query: 241 IMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKE 300
+ MHDL+Q+MG EIVRQE KDPGK SRLW +E IY+VL NTGTE IEGI LDM + KE
Sbjct: 485 LWMHDLIQQMGWEIVRQECPKDPGKWSRLWDYEHIYSVLKKNTGTETIEGIFLDMYRSKE 544
Query: 301 IHLNAGSFTNMHKLRFFKFYS------SHYGENVNKVHNFRGLESTELRYLQWHGCPLKS 354
I +F M++LR K ++ Y E ++ F S ELRYL WHG P S
Sbjct: 545 IQFTTEAFAKMNRLRLLKVFNFSGIGKEGYKEPLSVSFEF---PSYELRYLYWHGYPFGS 601
Query: 355 LSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLN 414
L SK ENL+ L M +S +++LWKG + L NL I LS+S+HL +P+ S NLE L
Sbjct: 602 LPSKFHSENLIELNMCYSYMRELWKGNEVLDNLNTIELSNSQHLIHLPNFSSMPNLERLV 661
Query: 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE 473
+GCT + E SI YL L++L+L++C+ L SL +SI L SL+ LILS CS L SFPE
Sbjct: 662 LEGCTTISELPFSIGYLTGLILLDLENCKRLKSLPSSICKLKSLETLILSACSKLESFPE 721
Query: 474 LSCNIEELS---LDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERL-- 528
+ N+E L LDGTA+++ SIE L+ L+ LNL +C L LP I LKSLE L
Sbjct: 722 IMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCKNLATLPCSIGNLKSLETLIV 781
Query: 529 -----------NLA--EALKELKAEGIAIREVPSSIACLKNLGRLSFE------------ 563
NL + L +L+A+G +R+ PSSI L+NL LSF
Sbjct: 782 SGCSKLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLRNLEILSFGGCKGLASNSWSS 841
Query: 564 --SFM-----CHEQMGLLLPISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEK 614
SF + +GL LP GL SL L ++DC ++E +P + LSS L L +
Sbjct: 842 LFSFWLLPRKSSDTIGLQLPSLSGLCSLRELDISDCNLMEGAVPFDICNLSSLETLNLSR 901
Query: 615 NNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEA-LSGLSILFT 673
NNF +P I +LS L L ++HC+ L +PELP + ++ A CSSL L+ S+
Sbjct: 902 NNFFSLPAGISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSSLNTILTPSSVCNN 961
Query: 674 QTSWNSQFFYFVNCFKLD-KNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPR-GMICF 731
Q F NCF LD +N + +MQ+ L+K +P G F
Sbjct: 962 QPVCRWLVFTLPNCFNLDAENPCSNDMAIISPRMQIVTNM----LQKLQNFLPDFGFSIF 1017
Query: 732 -PGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRDHHDDGGGFQVFCECK 790
PGSE+P+W Q++GS T LPP WF NF+GFA+C V F D +G Q+ C+
Sbjct: 1018 LPGSEIPDWISNQNLGSEVTIELPPHWFESNFLGFAVCCVFAFEDIAPNGCSSQLLCQ-- 1075
Query: 791 LKTEDGLCRVAVGHLTGWSD--GYRGPRYIGSDHVFLGFD-----FYMFSDGFDEYYYSD 843
L++++ R +GH+ D G R + S H++L + + D + + ++
Sbjct: 1076 LQSDESHFR-GIGHILHSIDCEGNSEDR-LKSHHMWLAYKPRGRLRISYGDCPNRWRHAK 1133
Query: 844 EVFIQFYLEDCCE---VTKCGIHLLYAQDFSDSTEDSVWNFSSDEQGEL 889
F CC V KCGIHL+YAQD + + + SS +L
Sbjct: 1134 A---SFGFISCCPSNMVRKCGIHLIYAQDHEERNSTMIHHSSSGNFSDL 1179
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 397/979 (40%), Positives = 515/979 (52%), Gaps = 90/979 (9%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ NV EES K G L +L+ LLS IL + N + G + G+NF L +KVLI+ DDV
Sbjct: 245 LSNVREESYKHG-LPYLQMELLSQILKERNPNAGLFNKGINFMKDVLHSRKVLIILDDVD 303
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
+Q+E L G+ W GSR+IIT RD+ +L VD IYEVKEL +D+A LF YAF
Sbjct: 304 QRKQLEDLAGDNNWFGSGSRIIITTRDRHLLTCQEVDAIYEVKELDNDEALKLFCLYAFR 363
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
+ + +L + Y G+PLA+KVLG L + I +W+S + K+K+ P+ ++Q VL
Sbjct: 364 HKHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGIHEWKSELDKLKQFPNKEVQNVL 423
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNK 240
K SF+GLDD EQN+FLDIA F+KG DKD V LD CGF IGI L DK L+ I NK
Sbjct: 424 KTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCGFFFGIGIRNLEDKSLITISENK 483
Query: 241 IMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKE 300
+ MHDLLQEMG EIVRQ+S + PG+RSRL HEDI +VLT NTGTEA+EGI LD+S KE
Sbjct: 484 LCMHDLLQEMGWEIVRQKS-EVPGERSRLRVHEDINHVLTTNTGTEAVEGIFLDLSASKE 542
Query: 301 IHLNAGSFTNMHKLRFFK-------------------------FYSSHYGENVNKVHNFR 335
++ + +FT M +LR K + +Y NK+H +
Sbjct: 543 LNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWIERNYLYTQNKLHLYE 602
Query: 336 GLE--STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLS 393
+ S LR L WHG PLKS S PE LV L M S +KQ W+G + LK I LS
Sbjct: 603 DSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQPWEGKKGFEKLKSIKLS 662
Query: 394 HSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIH 453
HS+HLTKIPD S NL L +GCT L+E H SI L KL+ LNL+ C+ L S S+SIH
Sbjct: 663 HSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIH 722
Query: 454 LGSLKKLILSGCSNLMSFPELSCNIE---ELSLDGTAIQEFPSSIERLSSLILLNLGNCL 510
+ SL+ L LSGCS L FPE+ N+E LSL+GTAI+ P SIE L+ L LLNL C
Sbjct: 723 MESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECK 782
Query: 511 RLEGLPSKICKLKSLERLNLA---------------EALKELKAEGIAIREVPSSIACLK 555
LE LP I KLKSL+ L L+ + L EL A+G ++EVP SI L
Sbjct: 783 SLESLPRSIFKLKSLKTLILSGCSELKDLPDNLGSLQCLTELNADGSGVQEVPPSITLLT 842
Query: 556 NLGRLSFE--------------SFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE--LPE 599
NL LS SF L LP GL SL L L C + E LP
Sbjct: 843 NLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPS 902
Query: 600 CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCC 659
LG + S L L +N+F IP S+ LS L SL + +C+ L SLPELP + + AH C
Sbjct: 903 DLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSC 962
Query: 660 SSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELEK 719
+SLE + S +T + F F NCF+L +N+ +I+ +QL ++ +
Sbjct: 963 TSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSIPKFLVPD 1022
Query: 720 QHCEVPRG--MICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRDHH 777
+ P PG+ +PEWF QS+G S LP W++ +G A CA + F+
Sbjct: 1023 RGIPTPHNEYNALVPGNRIPEWFRHQSVGCSVNIELPQHWYNTKLMGLAFCAALNFKGAM 1082
Query: 778 DDGGG-----FQVFCECKLKTEDGLCRVAVGHLTGWSDGYRGPRYIGSDHVFLGF-DFYM 831
D G F + C C V G L G ++I SDH +
Sbjct: 1083 DGNPGTEPSSFGLVCYLN------DCFVETG-LHSLYTPPEGSKFIESDHTLFEYISLAR 1135
Query: 832 FSDGFDEYY--YSDEVFIQFYLEDC-CEVTKCGIHLLYAQDFSDS----TEDSVWNFSSD 884
++ SD V F L EV KCGI L+Y +D D + W D
Sbjct: 1136 LEICLGNWFRKLSDNVVASFALTGSDGEVKKCGIRLVYEEDEKDGGCSFPFGTTWPGDGD 1195
Query: 885 EQGE-----LPLQPPPPPK 898
L + P PPK
Sbjct: 1196 GDDSNYKKGLLMDPSAPPK 1214
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 381/901 (42%), Positives = 488/901 (54%), Gaps = 90/901 (9%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ NV EES K G L +L+ LLS IL + + G + G+NF L +KVLI+ DDV
Sbjct: 251 LSNVREESYKHG-LPYLQMELLSQILKERKPNAGLFNKGINFMKDVLHSRKVLIILDDVD 309
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
+Q+E L G W GSR+IIT RD+ +L VD IYEVKEL +D+A LF YAF
Sbjct: 310 QRQQLEDLAGYNNWFGLGSRIIITTRDRHLLTCQEVDAIYEVKELDNDEALKLFCLYAFR 369
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
+ + +L + Y G+PLA+KVLG L + I +WES + K+K+ P+ ++Q VL
Sbjct: 370 HRHGTEDFRQLCGHALDYTSGLPLALKVLGSSLYTKGIHEWESELNKLKQFPNKEVQNVL 429
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNK 240
K SF+GLDD EQN+FLDIA F+KG DKD V LD CGF IGI L DK L+ I NK
Sbjct: 430 KTSFEGLDDNEQNIFLDIAFFYKGHDKDFVGDILDSCGFFFGIGIRNLEDKSLITISENK 489
Query: 241 IMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKE 300
+ MHDLLQEMG EIVRQ+S + PG+RSRL HEDI +VLT NTGTEA+EGI LD+S+ KE
Sbjct: 490 LCMHDLLQEMGWEIVRQKS-EVPGERSRLRVHEDINHVLTTNTGTEAVEGIFLDLSESKE 548
Query: 301 IHLNAGSFTNMHKLRFFK-------------------------FYSSHYGENVNKVHNFR 335
++ + +FT M +LR K + +Y NK+H +
Sbjct: 549 LNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDVWTERNYLYTQNKLHLYE 608
Query: 336 GLE--STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLS 393
+ S LR L WHG PLKS S PE LV L M S +KQLW+G + LK I LS
Sbjct: 609 DSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQLWEGKKGFEKLKSIKLS 668
Query: 394 HSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIH 453
HS+HLTK PD S NL L +GCT L+E H SI L KL+ LNL+ C+ L S S+SIH
Sbjct: 669 HSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIFLNLEGCKKLKSFSSSIH 728
Query: 454 LGSLKKLILSGCSNLMSFPELSCNIEE---LSLDGTAIQEFPSSIERLSSLILLNLGNCL 510
+ SL+ L LSGCS L FPE+ N+E LSL+GTAI+ P SIE L+ L LLNL C
Sbjct: 729 MESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPLSIENLTGLALLNLKECK 788
Query: 511 RLEGLPSKICKLKSLERLNLA---------------EALKELKAEGIAIREVPSSIACLK 555
LE LP I KLKSL+ L L + L EL A+G I+EVP SI L
Sbjct: 789 SLESLPRSIFKLKSLKTLTLCGCSELKELPDDLGSLQCLAELNADGSGIQEVPPSITLLT 848
Query: 556 NLGRLSFE--------------SFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE--LPE 599
NL +LS SF L LP GL SL L L C + E LP
Sbjct: 849 NLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELRLPSFSGLYSLRVLILQRCNLSEGALPS 908
Query: 600 CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCC 659
LG + S L L +N+F IP S+ LS L SL + +C+ L SLPELP + + AH C
Sbjct: 909 DLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQSLPELPSSVESLNAHSC 968
Query: 660 SSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELEK 719
+SLE S S +T + F F NCF+L +N+ +I+ +QL ++
Sbjct: 969 TSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAILEGIQLMSSI------- 1021
Query: 720 QHCEVPRGM--------ICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVV 771
VP G+ PGS +PEWF QS+G S LPP W++ +G A CA +
Sbjct: 1022 PKFLVPWGIPTPHNEYNALVPGSRIPEWFRHQSVGCSVNIELPPHWYNTKLMGLAFCAAL 1081
Query: 772 GFRDHHDDGGG-----FQVFCECKLKTEDGLCRVAVGHLTGWSDGYRGPRYIGSDHVFLG 826
F+ D G F + C C V G L G ++I SDH
Sbjct: 1082 NFKGAMDGYPGTEPSSFGLVCYL------NDCFVETG-LHSLYTPLEGSKFIESDHTLFE 1134
Query: 827 F 827
+
Sbjct: 1135 Y 1135
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147768286|emb|CAN64759.1| hypothetical protein VITISV_033530 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 386/949 (40%), Positives = 526/949 (55%), Gaps = 96/949 (10%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ NV EES++ G LA+L++ LLS I GN++ G + G+NF +RL +KVLIV DDV
Sbjct: 253 LPNVREESQRHG-LAYLQEELLSQI-SGGNLNKGNFNRGINFIKERLHSRKVLIVLDDVD 310
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
EQ+E L GN W GSR+IIT +DK +L GVD IY V+ L ++A LF AF
Sbjct: 311 MYEQLEVLAGNHDWFGAGSRIIITTKDKTLLNMHGVDAIYNVEGLKYNEALKLFCWCAFK 370
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
+ P YM+L +KY +G+PLAIKVLG F+ + I +W+S + K+KRIPH D+QKVL
Sbjct: 371 HDLPTADYMQLCKNFVKYIEGLPLAIKVLGSFVKNKTIDEWKSALDKLKRIPHKDVQKVL 430
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNK 240
++SFDGLDD ++++FLDIA FFKG+DKD V K L+ C F I VL + L+++ NNK
Sbjct: 431 RISFDGLDDNQKDIFLDIACFFKGQDKDFVAKILESCDFFPANDIRVLEENSLILVSNNK 490
Query: 241 IMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKE 300
+ MHBLLQEMG EIVRQE++K PGKRSRLW H+++ +VLT NTGTEA+EG+ LD+S KE
Sbjct: 491 LCMHBLLQEMGWEIVRQENVKYPGKRSRLWFHDEVNHVLTTNTGTEAVEGLVLDLSASKE 550
Query: 301 IHLNAGSFTNMHKLRFFKFYSSHYGENVN-----------------KVHNFRGLE----- 338
+H +AG+FT M++LR +FY+ ++ + H + +
Sbjct: 551 LHXSAGAFTEMNRLRVLRFYNVKMNGSLEYLSEXELFDTTYHPWRWRAHEIQRADEMQTD 610
Query: 339 ------------STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVN 386
S LR L WH PLKSL S P+ LV L M S ++ LWKG +
Sbjct: 611 CKLHLSGDLKFLSNNLRSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEXLWKGDKSFEK 670
Query: 387 LKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT 446
LK I LSHS++LT+ PD S A NLE L +GC +++ H SI L KL+ LNL C++L
Sbjct: 671 LKFIKLSHSQYLTRTPDFSGAPNLERLILEGCKSMVKVHPSIGALQKLIFLNLXGCKNLK 730
Query: 447 SLSTSIHLGSLKKLILSGCSNLMSFPELSCNIE---ELSLDGTAIQEFPSSIERLSSLIL 503
S ++SIH+ SL+ L LSGCS L FPE+ N++ +L LD TA++E PSSI RL+ L+L
Sbjct: 731 SFASSIHMNSLQILTLSGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVL 790
Query: 504 LNLGNCLRLEGLPSKICKLKSLERLNLA---------------EALKELKAEGIAIREVP 548
LNL NC +L LP +CKL SL+ L LA L L A+G I+EVP
Sbjct: 791 LNLTNCKKLVSLPQSLCKLTSLQILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVP 850
Query: 549 SSIACLKNLGRLSFE---------SFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE--L 597
SI L NL LS S + L L L+S+ L L+DC + E L
Sbjct: 851 PSITLLTNLQVLSLAGCKKRNVVFSLWSSPTVCLQLRSLLNLSSVKTLSLSDCNLSEGAL 910
Query: 598 PECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAH 657
P L LSS L L KNNF IP S+ +LS L L +SHC+ L S+PELP + + A
Sbjct: 911 PSDLSSLSSLESLDLSKNNFITIPASLNRLSQLLYLSLSHCKSLQSVPELPSTIQKVYAD 970
Query: 658 CCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEEL 717
C SLE S LS ++ N F F +CF+L +NE + + + +QL ++
Sbjct: 971 HCPSLETFS-LSACASR-KLNQLNFTFSDCFRLVENEHSDTVGAILQGIQLASSIPKFVD 1028
Query: 718 EKQHCEVPRG--MICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRD 775
+ VP + PGS +PEWF+ Q+MGSS T LPP W++ +G A+CAV F
Sbjct: 1029 ANKGSPVPYNDFHVIVPGSSIPEWFIHQNMGSSVTVELPPHWYNAKLMGLAVCAV--FHA 1086
Query: 776 HHDDGGGFQVFCECKLKTEDGLCRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYMFSDG 835
D G Q G + L WS + DHV+ G+ + +
Sbjct: 1087 DPIDWGYLQY------SLYRGEHKYDSYMLQTWSP-------MKGDHVWFGYQSLVGXED 1133
Query: 836 ----FDEYYYSDEVFIQFYLEDCC--------EVTKCGIHLLYAQDFSD 872
F E + ++ + C V KCG+ L Y Q D
Sbjct: 1134 DRMWFGERSGTXKILFSGHCIKSCJVCVQPEVVVKKCGVRLAYEQGDKD 1182
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 396/1011 (39%), Positives = 538/1011 (53%), Gaps = 167/1011 (16%)
Query: 7 ESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQME 66
ESEK+GGL +R L S I ++ N+ I P IG F R+ RKK+LIVFDDV+ +Q+E
Sbjct: 248 ESEKNGGLFRIRDELFSKITEEENLHIRTPRIGHPFIKDRICRKKILIVFDDVNDVDQIE 307
Query: 67 FLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNV 126
L+G GSR+I+T+RDKQVLK D I+EV+ L +A LFS +AF N P
Sbjct: 308 MLLGGCESFGPGSRIILTSRDKQVLKKYA-DKIFEVEGLNHREALHLFSLHAFKDNQPPY 366
Query: 127 GYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDG 186
YMELS + I YAKG PLA+KVLG L GR K+WES + K++++ + VL++S++
Sbjct: 367 NYMELSVRAINYAKGNPLALKVLGSSLFGRTTKEWESALNKVEKLTRQKVHSVLRISYEA 426
Query: 187 LDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDL 246
LD EE+++FLDIA FF+G D V + LDGCGF +IG SVL+D+CL+ I ++K+ MHDL
Sbjct: 427 LDSEEKSIFLDIACFFRGHRVDFVKRILDGCGFKTDIGFSVLIDRCLIKISDDKVEMHDL 486
Query: 247 LQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAG 306
LQEM ++VR+ES+ + G +SRLW +D+Y VLTNN GT +EGI LD+SK++EI L++
Sbjct: 487 LQEMAHDVVRKESLDELGGQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKIREIELSST 546
Query: 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLES--TELRYLQWHGCPLKSLSSKIPPENL 364
+ M+KLR K Y+S G +VH GLES ELRYL W G PL SL S P+NL
Sbjct: 547 ALGRMYKLRLLKIYNSEAGVKC-RVHLPHGLESLSEELRYLHWDGYPLTSLPSNFRPQNL 605
Query: 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLT-----------------------KI 401
V + + S + +LW+G Q LVNLK +NLS+ EH+T K+
Sbjct: 606 VEINLSCSKVNRLWRGDQNLVNLKDVNLSNCEHITFLPDLSKARNLERLNLQFCTSLVKV 665
Query: 402 P----------DLSL--------------ATNLESLNFQGCTCLL---ETHSSIQYLN-- 432
P DL L ++ LE+LN GC L ET + YLN
Sbjct: 666 PSSIQHLDRLVDLDLRGCERLVNLPSRINSSCLETLNLSGCANLKKCPETARKLTYLNLN 725
Query: 433 ---------------KLVVLNLKHCRSLTSLSTSIHL----------------------- 454
LV LNLK+C+ L +L +++L
Sbjct: 726 ETAVEELPQSIGELSGLVALNLKNCKLLVNLPENMYLLTSLLLVDISGCSSISRLPDFSR 785
Query: 455 -------------------GSLKKLI---LSGCSNLMSFPELSCNIEELSLDGTAIQEFP 492
G L+KLI LSGCS++ FP++S NI+EL LDGTAI+E P
Sbjct: 786 NIRYLYLNGTAIEELPSSIGDLRKLIYLNLSGCSSITEFPKVSNNIKELYLDGTAIREIP 845
Query: 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEAL---------------KEL 537
SSI+ L L+ L+L NC + E LPS IC L+ LERLNL+ L + L
Sbjct: 846 SSIDCLFELVELHLRNCKQFEILPSSICTLRKLERLNLSGCLQFRDFPEVLEPMVCLRYL 905
Query: 538 KAEGIAIREVPSSIACLKNLGRLSFES--FMCHEQMGLLLPISFGLTSLTYLR---LTDC 592
E I ++PS I LK L L + ++ + + L +S L YLR L C
Sbjct: 906 YLEETRITKLPSPIGNLKGLACLEVGNCKYLNDIECFVDLQLSERWVDLDYLRKLNLDGC 965
Query: 593 GIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLS 652
I +P+ LG LSS +L L NNF IP SI +LS L LG+ +C+RL SLPELP LS
Sbjct: 966 HISVVPDSLGCLSSLEVLDLSGNNFSTIPLSINKLSELQYLGLRNCKRLESLPELPPRLS 1025
Query: 653 DIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATA 712
++A C SL L S T N F F NC L + + +I+ A +K +L
Sbjct: 1026 KLDADNCESLNYLGSSSS--TVVKGNIFEFIFTNCLSLCR--INQILPYALKKFRL---- 1077
Query: 713 WWEELEKQHCEVPRGMICF--PGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAV 770
+ + Q +V G F PG P+W QS GS+ T L W + F+GF+LCAV
Sbjct: 1078 -YTKRLHQLTDVLEGACSFFLPGGVSPQWLSHQSWGSTVTCQLSSHWANSKFLGFSLCAV 1136
Query: 771 VGFRDHHDDGGGFQVFCECKLKTEDGLCRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFY 830
+ F H G QV C E G +L GW D R I S+H+ +GFD
Sbjct: 1137 IAF---HSFGHSLQVKCTYHFSNEHGDSHDLYCYLHGWYDEKR----IDSEHILVGFDPC 1189
Query: 831 MFSDGFDEYYYSD--EVFIQFYLEDC---------CEVTKCGIHLLYAQDF 870
+ + ++Y +S+ EV ++F LED C+V KCG+ LLY +
Sbjct: 1190 LVAK--EDYMFSEYSEVSVEFQLEDINGNLLPLDLCQVHKCGVRLLYEDEI 1238
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 385/998 (38%), Positives = 535/998 (53%), Gaps = 142/998 (14%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ N+ +ESEK G L LR LLS +L++ N+ +G P I F RL +KKVL+V DDV
Sbjct: 243 LPNIRQESEK-GRLNDLRDELLSKLLEEENLRVGTPHIP-TFIRDRLCQKKVLLVLDDVI 300
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
Q + LI + GS L++T+RD+QVLKN VD IYEV+EL +A LFS AF
Sbjct: 301 DVRQFQHLI-EMPLIGPGSVLVVTSRDRQVLKNV-VDEIYEVEELNSHEALQLFSLNAFK 358
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
N+P YMELS I YAKG PLA++VLG +L + + WES + +I+ P ++I +L
Sbjct: 359 GNHPPKAYMELSITAINYAKGNPLALQVLGSYLFDKGRQFWESQLNEIESFPELNIYDLL 418
Query: 181 KVSFDGL-DDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNN 239
++ FD L D+ +++FLD+A FF+G D V + LDGCGF + G SVL+D+CL+ I ++
Sbjct: 419 RIGFDALRDNNTKSIFLDVACFFRGHRVDFVKRILDGCGFKTDTGFSVLIDRCLIKISDD 478
Query: 240 KIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVK 299
K+ MHDLLQEM E+VR+ES+ + G++SRLW +D+Y VLTNN GT +EGI LD+SK +
Sbjct: 479 KVEMHDLLQEMAHEVVRKESVDELGRQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKTR 538
Query: 300 EIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLES--TELRYLQWHGCPLKSLSS 357
EI L++ + M+KLR K Y+S G +VH GLES ELRYL W G PL SL
Sbjct: 539 EIELSSTALERMYKLRLLKIYNSEAGVKC-RVHLPHGLESLSEELRYLHWDGYPLTSLPC 597
Query: 358 KIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417
P+NLV L + S++KQLW+G Q LVNLK +NLS+ EH+T +PDLS A NLE LN Q
Sbjct: 598 NFRPQNLVELNLSSSNVKQLWRGDQNLVNLKDVNLSNCEHITLLPDLSKARNLERLNLQF 657
Query: 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCN 477
CT L++ SS+Q+L+KLV L+L+ C+ L +L + + L+ L LSGCSN+ PE +
Sbjct: 658 CTSLVKFPSSVQHLDKLVDLDLRGCKRLINLPSRFNSSFLETLNLSGCSNIKKCPETARK 717
Query: 478 IEELSLDGTAIQEFPSSIERLSSLILLNLGNC---------------------------- 509
+ L+L+ TA++E P SI L L+ LNL NC
Sbjct: 718 LTYLNLNETAVEELPQSIGELGGLVALNLKNCKLLVNLPENMYLLKSLLIADISGCSSIS 777
Query: 510 ----------------LRLEGLPSKICKLKSLERLNLA------------EALKELKAEG 541
+E LPS I L+ L L+L+ ++EL +G
Sbjct: 778 RFPDFSRNIRYLYLNGTAIEELPSSIGDLRELIYLDLSGCSSITEFPKVSRNIRELYLDG 837
Query: 542 IAIREVPSSI---ACLK------------------------------NLGRLS-FESFMC 567
AIRE+PSSI C+ NL L+ E C
Sbjct: 838 TAIREIPSSIQLNVCVNFMNCTCETANNLRFFQAASTGITKLPSPVGNLKGLACLEVGNC 897
Query: 568 HEQMGLLLPISFGL----TSLTYLR---LTDCGIIELPECLGQLSSRSILLLEKNNFERI 620
G+ + L L YLR L C I ++P+ LG LSS +L L NNFE +
Sbjct: 898 KYLKGIECLVDLHLPERDMDLKYLRKLNLDGCCISKVPDSLGCLSSLEVLDLSGNNFETM 957
Query: 621 PESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQ 680
P +I +L L LG+ C +L S+P LP LS ++AH C SL +S ++ N
Sbjct: 958 PMNIYKLVELQYLGLRSCRKLKSIPRLPRRLSKLDAHDCQSLIKVSSSYVV----EGNIF 1013
Query: 681 FFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPRGM--ICFPGSELPE 738
F F NC +L + +I+ + K QL E+ H +VP G C PG PE
Sbjct: 1014 EFIFTNCLRLPV--INQILLYSLLKFQLYT-------ERLH-QVPAGTSSFCLPGDVTPE 1063
Query: 739 WFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRDHHDDGGGFQVFCECKLKTEDGLC 798
WF QS GS+ TF+L W + F+GF+L AV+ FR G QV C + + G
Sbjct: 1064 WFSHQSWGSTVTFHLSSHWANSEFLGFSLGAVIAFRSF---GHSLQVKCTYHFRNKHGDS 1120
Query: 799 RVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYMFSDGFDEYYYSDEVFIQFYLEDC---- 854
+L GW D R + S+H+F+GFD + + D + EV ++F LED
Sbjct: 1121 HDLYCYLHGWYD----ERRMDSEHIFIGFDPCLIAKEHDMFSEYSEVSVEFQLEDMSGNL 1176
Query: 855 -----CEVTKCGIHLLYAQDFSDSTEDSVWNFSSDEQG 887
C+V +CG+ LL+ +D ED + F G
Sbjct: 1177 LPLDLCQVVECGVRLLHVKD-----EDEISRFDVTMPG 1209
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 385/1024 (37%), Positives = 530/1024 (51%), Gaps = 159/1024 (15%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
+ NV E+S+K+ A ++ LLS I ++GN++ G S G+N K L +VLIV DDV
Sbjct: 250 LSNVREKSQKNDP-AVIQMELLSQIFEEGNLNTGVLSGGINVIEKTLHSMRVLIVLDDVD 308
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
+Q+E L GN W GSR+IIT R+K +L IY KEL D+AR LF ++AF
Sbjct: 309 CPQQLEVLAGNHNWFSPGSRIIITTREKHLLDE--KVEIYVAKELNKDEARKLFYQHAFK 366
Query: 121 KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVL 180
P +++L ++ + Y KG+PLA+K+LGRFL R K+WES ++K++RIP+ +IQ VL
Sbjct: 367 YKPPVGDFVQLCDRALNYTKGIPLALKILGRFLYNRSKKEWESELEKLRRIPNKEIQDVL 426
Query: 181 KVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNK 240
++SFDGLDD ++++FLDIA FFKG+DKD VIK L C F EI I L+DK L+ I NK
Sbjct: 427 RISFDGLDDNQKDIFLDIACFFKGQDKDYVIKLLKSCDFFPEIEIRNLIDKSLVTISYNK 486
Query: 241 IMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKE 300
+ MHDL+QEMG EIVRQESIKDPGKRSRLW ++D+ ++LT NTGTEA+EG+ L++S +KE
Sbjct: 487 LCMHDLIQEMGWEIVRQESIKDPGKRSRLWVNDDVIDMLTTNTGTEAVEGMVLNLSTLKE 546
Query: 301 IHLNAGSFTNMHKLRFFKFYSSH-YGENVNKVHNFR----------------GLESTELR 343
+H + FT M+KLR +FY + +G + HN R S LR
Sbjct: 547 LHFSVNVFTKMNKLRVLRFYDAQIWGSSWIGRHNDRYKSPYTECKFHLSGDFKFLSNHLR 606
Query: 344 YLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD 403
L W G PLKSL S PE L+ L+M S ++QLW+G + LK I LSHS+HL K PD
Sbjct: 607 SLHWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQKLKFIELSHSQHLIKTPD 666
Query: 404 LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILS 463
S A L + +GCT L++ H SI L KL+ LNL+ C++L S S+SIHL SL+ + LS
Sbjct: 667 FSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNLKSFSSSIHLESLQTITLS 726
Query: 464 GCSNLMSFPELSC---NIEELSLDGTAIQEFPSSIE------------------------ 496
GCS L FPE+ N+ ELSL GTAI+ P SIE
Sbjct: 727 GCSKLKKFPEVQGAMDNLPELSLKGTAIKGLPLSIEYLNGLSLLNLEECKSLESLPGCIF 786
Query: 497 RLSSLILLNLGNCLRLE------------------------------------------- 513
+L SL L L NC RL+
Sbjct: 787 KLKSLKTLILSNCSRLKKLPEIQENMESLKKLFLDDTGLRELPSSIEHLNGLVLLKLKNC 846
Query: 514 ----GLPSKICKLKSLERLNLA---------------EALKELKAEGIAIREVPSSIACL 554
LP ICKL SL+ L L+ + L +LKA G I+EVP+SI L
Sbjct: 847 KKLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLVKLKANGTGIQEVPTSITLL 906
Query: 555 KNLGRLSFESFMCHEQM--------------GL---LLPISFGLTSLTYLRLTDCGIIE- 596
L LS E GL LP+ L SL L L+ C ++E
Sbjct: 907 TKLEVLSLAGCKGGESKSRNLALCLRSSPTKGLRPSFLPV---LYSLRKLNLSGCNLLEG 963
Query: 597 -LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIE 655
LP L LS L L +N+F +P ++ +L L L + HC+ L SLPELP ++ +
Sbjct: 964 ALPSDLSSLSWLECLDLSRNSFITVP-NLSRLPRLKRLILEHCKSLRSLPELPSNIEKLL 1022
Query: 656 AHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWE 715
A+ C+SLE S S + + F F NCF+L +NE + ++ R ++L A+
Sbjct: 1023 ANDCTSLETFSNPSSAYAWRNSRHLNFQFYNCFRLVENEQSDNVEAILRGIRLVASI--S 1080
Query: 716 ELEKQHCEVPRGMICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRD 775
H E+ PGS +PEWF QS+G S T LPP W + +G A+C V
Sbjct: 1081 NFVAPHYELKWYDAVVPGSSIPEWFTDQSLGCSVTVELPPHWCTTRLMGLAVCFVF---- 1136
Query: 776 HHDDGGGFQVFCECKLKTEDG---LCRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYMF 832
H + G G E E G L A H + +DH++ G+ ++
Sbjct: 1137 HPNIGMGKFGRSEYFSMNESGGFSLHNTASTHFS------------KADHIWFGYR-PLY 1183
Query: 833 SDGFDEYYYSDEVFIQFYLEDCCE--VTKCGIHLLYAQDFSDSTEDSVWNFSSDEQGELP 890
+ F D + + F + V KCG L++ QD E+ + N ++ E+P
Sbjct: 1184 GEVFSPSI--DHLKVSFAGSNRAGEVVKKCGARLVFEQDEPCGREEEM-NHVHEDWLEVP 1240
Query: 891 LQPP 894
P
Sbjct: 1241 FYIP 1244
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 909 | ||||||
| TAIR|locus:2122965 | 1210 | AT4G19510 [Arabidopsis thalian | 0.531 | 0.399 | 0.358 | 7e-111 | |
| TAIR|locus:2155322 | 1170 | LAZ5 "LAZARUS 5" [Arabidopsis | 0.565 | 0.439 | 0.380 | 1.3e-106 | |
| TAIR|locus:2153363 | 1261 | AT5G45200 [Arabidopsis thalian | 0.902 | 0.650 | 0.324 | 5.4e-102 | |
| TAIR|locus:2175991 | 1294 | AT5G17680 [Arabidopsis thalian | 0.688 | 0.483 | 0.371 | 1.4e-101 | |
| UNIPROTKB|Q40392 | 1144 | N "TMV resistance protein N" [ | 0.795 | 0.631 | 0.338 | 4.4e-100 | |
| TAIR|locus:2081790 | 1253 | AT3G51560 [Arabidopsis thalian | 0.430 | 0.312 | 0.399 | 2.9e-97 | |
| TAIR|locus:2118106 | 1219 | AT4G12010 [Arabidopsis thalian | 0.596 | 0.444 | 0.356 | 2.3e-80 | |
| TAIR|locus:2153328 | 1231 | AT5G45230 [Arabidopsis thalian | 0.519 | 0.383 | 0.358 | 2.3e-96 | |
| TAIR|locus:2081810 | 1226 | AT3G51570 [Arabidopsis thalian | 0.528 | 0.391 | 0.345 | 3.3e-95 | |
| TAIR|locus:2827629 | 1355 | AT2G17050 [Arabidopsis thalian | 0.668 | 0.448 | 0.334 | 3.7e-94 |
| TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 7.0e-111, Sum P(3) = 7.0e-111
Identities = 183/511 (35%), Positives = 259/511 (50%)
Query: 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTK 400
EL YL W G P L S P+ LV L + +S IKQLW+ + +L+ ++L S+ L
Sbjct: 590 ELVYLHWQGYPYDCLPSDFDPKELVDLSLRYSHIKQLWEDEKNTESLRWVDLGQSKDLLN 649
Query: 401 IPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKL 460
+ LS A NLE L+ +GCT L + S++ +N+L+ LNL+ C SL SL + SLK L
Sbjct: 650 LSGLSRAKNLERLDLEGCTSL-DLLGSVKQMNELIYLNLRDCTSLESLPKGFKIKSLKTL 708
Query: 461 ILSGCSNLMSFPELSCNIEELSLDGTAIQEFPXXXXXXXXXXXXXXXXXXXXXXXPSKIC 520
ILSGC L F +S +IE L L+GTAI+ P+ +
Sbjct: 709 ILSGCLKLKDFHIISESIESLHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLY 768
Query: 521 KLKSLERLNXXXXXXXXXX---------------XGIAIREVPSSIACLKNLGRLSFESF 565
KLKSL+ L G +I++ P ++CL NL SF
Sbjct: 769 KLKSLQELVLSGCSALESLPPIKEKMECLEILLMDGTSIKQTPE-MSCLSNLKICSFCRP 827
Query: 566 MCHEQMGLL-LPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624
+ + GL+ LP S G + L+ L LT+C I +LP+ L S L L +NN E +PESI
Sbjct: 828 VIDDSTGLVVLPFS-GNSFLSDLYLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESI 886
Query: 625 IQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSG-LSI-LFTQTSWNSQFF 682
+L L L + HC RL SLP LP +L ++AH C SLE +S L+I L T+ + F
Sbjct: 887 EKLYSLLLLDLKHCCRLKSLPLLPSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTT--F 944
Query: 683 YFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPRGMICFPGSELPEWFMF 742
F +CFKL++ E ++I+ AQ K QL A K P +CFPG ++P WF
Sbjct: 945 IFTDCFKLNQAEKEDIVAQAQLKSQLLARTSRHHNHKGLLLDPLVAVCFPGHDIPSWFSH 1004
Query: 743 QSMGSSATFNLPPDWFSYNFVGFALCAVVGFRXXXXXXXX-FQVFCECKLKTEDGLCRVA 801
Q MGS +L P W + F+G +LC VV F+ V C+ K K+++G
Sbjct: 1005 QKMGSLIETDLLPHWCNSKFIGASLCVVVTFKDHEGHHANRLSVRCKSKFKSQNGQFISF 1064
Query: 802 VGHLTGWSDGYRG----PRYIGSDHVFLGFD 828
L GW++ PR +GSDHVF+ ++
Sbjct: 1065 SFCLGGWNESCGSSCHEPRKLGSDHVFISYN 1095
|
|
| TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 834 (298.6 bits), Expect = 1.3e-106, Sum P(2) = 1.3e-106
Identities = 200/525 (38%), Positives = 289/525 (55%)
Query: 13 GLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQ 72
G+ L++ LL +L D N++IG + F L KKV +V D+VS+ EQ+E L G
Sbjct: 321 GMCWLQKRLLEELLKDTNLNIGYTTNEHEFCKDVLLLKKVFLVIDNVSSEEQIETLFGKW 380
Query: 73 GWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELS 132
W+ GS+++IT+ D+ +LK DT Y V L D+ + F+ +AFG + ++LS
Sbjct: 381 NWIKNGSKIVITSSDESMLKGFVKDT-YVVPSLNSRDSLLWFTNHAFGLDDAQGNLVKLS 439
Query: 133 NKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQ 192
+ YAKG PLA+ G LCG+ DWE IK + I + IQ VL+ +D L + ++
Sbjct: 440 KHFLNYAKGNPLALGAFGVELCGKDKADWEKRIKTLTLISNKMIQDVLRRRYDELTERQK 499
Query: 193 NLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVD---KCLMVILNNKIMMHDLLQE 249
++FLD+A FFK E++ V ++ C + + D K L+ I ++ MHD+L
Sbjct: 500 DIFLDVACFFKSENESYVRHVVNSCDSESTKSWDEITDLKGKFLVNISGGRVEMHDILCT 559
Query: 250 MGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKV-KEIHLNAGSF 308
+E+ Q +D RLW+++DI L N E + GI LDMSKV +E+ + F
Sbjct: 560 FAKELASQALTEDTRVHLRLWNYQDIMWFLNNELEMENVRGIFLDMSKVPEEMTFDGNIF 619
Query: 309 TNMHKLRFFKFYSS--HY-GENVNKVHNFRGLEST--ELRYLQWHGCPLKSLSSKIPPEN 363
+NM LR+ K YSS H GE + K R ++ ++RYL W P + L S PEN
Sbjct: 620 SNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPLDKVRYLHWMKYPWEKLPSDFNPEN 679
Query: 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE 423
LV LE+P+SSIK++W+GV+ LK NLS+S LT + LS A NLE LN +GCT LL+
Sbjct: 680 LVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLLK 739
Query: 424 THSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSL 483
++ + LV LN++ C SLT L SI + SLK LILS CS L F +S N+EEL L
Sbjct: 740 LPQEMENMKSLVFLNMRRCTSLTCLQ-SIKVSSLKILILSDCSKLEEFEVISENLEELYL 798
Query: 484 DGTAIQEFPXXXXXXXXXXXXXXXXXXXXXXXPSKICKLKSLERL 528
DGTAI+ P P ++ K K+L+ L
Sbjct: 799 DGTAIKGLPPAAGDLTRLVVLNMEGCTELESLPKRLGKQKALQEL 843
|
|
| TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
Identities = 279/860 (32%), Positives = 425/860 (49%)
Query: 28 DGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARD 87
DGN + + +++ +L KKV +V D+V Q++ ++G W+ GSR++IT
Sbjct: 303 DGNRA----KLSIDYIKTQLQGKKVFVVLDNVGDKSQIDKILGGCDWIKAGSRIVITTSS 358
Query: 88 KQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKN--YPNVGYMELSNKIIKYAKGVPLA 145
K V++ G+++ Y V L DA F+ +AF + + + +L+ + + Y+ G P
Sbjct: 359 KSVIQ--GLNSTYLVPGLSSCDALNHFNYHAFSASDGFYQPSFTDLAKQFVDYSMGHPSV 416
Query: 146 IKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE 205
+K+L R L + W+ + + P IQ VL++ +D L ++ + +FLDIA FF+ E
Sbjct: 417 LKLLARELRSKDESYWKEKLSALANSPSNTIQDVLRIPYDELKEQHKIVFLDIAYFFRFE 476
Query: 206 DKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGK 265
++ V + L + I+ L DK L+ I +++ M+DLL + Q S ++
Sbjct: 477 NESYVRRLLGSSAHADASEITDLADKFLIDISGDRVEMNDLLYTFAIGLNSQASSENTTS 536
Query: 266 RSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYG 325
RL H +I +VL N + G+ LDM +VKE+ L++ +F M LR+ KFY+SH
Sbjct: 537 ERRLSKHSEIVDVLMNKAEATKVRGVYLDMFEVKEMGLDSDTFNKMDDLRYLKFYNSHCH 596
Query: 326 ---ENVNKVHNF-RGLE--STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK 379
E + NF GLE ELRYL W P K+L P+NL+ L++P+S I+Q+W+
Sbjct: 597 RECEAEDSKLNFPEGLEFLPQELRYLNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWE 656
Query: 380 GVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439
+ NL+ ++L+HS L + LS A L+S+N +GCT L +Q + L+ LNL
Sbjct: 657 EEKDTSNLQWLDLNHSSKLHSLSGLSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNL 716
Query: 440 KHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPXXXXXXX 499
+ C SL SL I L L+ LILS CS F ++ N+EEL LDGTAI+E P
Sbjct: 717 RGCTSLESLP-DITLVGLRTLILSNCSRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQ 775
Query: 500 XXXXXXXXXXXXXXXXPSKICKLKSLERLNXXXXXXXXXXXGIAIREVPSSIACLKNLGR 559
P I LK+++ + ++ P LK+L
Sbjct: 776 KLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCS--------SLESFPEVNQNLKHLKT 827
Query: 560 LSFESFMCHEQMGLLLPIS--FGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNF 617
L + + +L +S GLTS ++C + E P + LSS L L N F
Sbjct: 828 LLLDGTAIKKIPDILHHLSPDQGLTSSQ----SNCHLCEWPRGIYGLSSVRRLSLSSNEF 883
Query: 618 ERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSI-LFTQTS 676
+P SI L HL L + HC+ L S+P LP +L ++AH C SLE +S LS L +T
Sbjct: 884 RILPRSIGYLYHLNWLDLKHCKNLVSVPMLPPNLQWLDAHGCISLETISILSDPLLAETE 943
Query: 677 WNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPRGMICFPGSEL 736
F F NC KL K E I ++K+QL + A + +V G ICFPG ++
Sbjct: 944 HLHSTFIFTNCTKLYKVEENSIESYPRKKIQLMSNALARYEKGLALDVLIG-ICFPGWQV 1002
Query: 737 PEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRXXXXXXXXFQVFCECKLKTEDG 796
P WF +++G NLP W + G ALCAVV F+ V C + K ED
Sbjct: 1003 PGWFNHRTVGLELKQNLPRHWNAGGLAGIALCAVVSFKDYISKNNRLLVTCSGEFKKEDK 1062
Query: 797 LCRVAVGHLTGWSD-GYRGPRYIGSDHVFLGFDFYM-FSDGFDEY-YYSDEVFIQFYLED 853
L GW++ G R I SDHVF+G+ ++ F D + E ++F + D
Sbjct: 1063 TLFQFSCILGGWTEHGSYEAREIKSDHVFIGYTSWLNFMKSDDSIGCVATEASLRFQVTD 1122
Query: 854 C------CEVTKCGIHLLYA 867
C V KCG L+Y+
Sbjct: 1123 GTREVTNCTVVKCGFSLIYS 1142
|
|
| TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
Identities = 242/652 (37%), Positives = 364/652 (55%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
++NV E + G + L+ L + + + N +R K V IV DDV
Sbjct: 240 MENVKEVCNRYG-VRRLQVEFLCRMFQERDKEAWSSVSCCNIIKERFRHKMVFIVLDDVD 298
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
SEQ+ L+ GW GSR+I+T RD+ +L + G++ +Y+VK L +A LF YAF
Sbjct: 299 RSEQLNELVKETGWFGPGSRIIVTTRDRHLLLSHGINLVYKVKCLPKKEALQLFCNYAFR 358
Query: 121 KNY--PNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQK 178
+ P+ G+ ELS + + YA G+PLA++VLG FL R +WEST+ ++K PH DI +
Sbjct: 359 EEIILPH-GFEELSVQAVNYASGLPLALRVLGSFLYRRSQIEWESTLARLKTYPHSDIME 417
Query: 179 VLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILN 238
VL+VS+DGLD++E+ +FL I+ F+ + D V K LD CG++AEIGI++L +K L+V N
Sbjct: 418 VLRVSYDGLDEQEKAIFLYISCFYNMKQVDYVRKLLDLCGYAAEIGITILTEKSLIVESN 477
Query: 239 NKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKV 298
+ +HDLL++MGRE+VRQ+++ +P +R LW EDI ++L+ N+GT+ +EGISL++S++
Sbjct: 478 GCVKIHDLLEQMGRELVRQQAVNNPAQRLLLWDPEDICHLLSENSGTQLVEGISLNLSEI 537
Query: 299 KEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE--STELRYLQWHGCPLKSLS 356
E+ + +F + L+ FY + + +VH GL +LRYL+W G PLK++
Sbjct: 538 SEVFASDRAFEGLSNLKLLNFYDLSF-DGETRVHLPNGLSYLPRKLRYLRWDGYPLKTMP 596
Query: 357 SKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQ 416
S+ PE LV L M +S++++LW G+Q L NLK ++LS ++L ++PDLS ATNLE LN
Sbjct: 597 SRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSKATNLEELNLS 656
Query: 417 GCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSC 476
C L+E SI+ L L L +C L + I L SL+ + +SGCS+L FPE+S
Sbjct: 657 YCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSSLKHFPEISW 716
Query: 477 NIEELSLDGTAIQEFPXXXXXXXXXXXXXXXXXXXXXXXPSKICKLKSLERLNXXXXXXX 536
N L L T I+E P PS + L SL+ LN
Sbjct: 717 NTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRR- 775
Query: 537 XXXXGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGL--TSLTYLRLTDCGI 594
+ +P + L+NL S E+ E G L F TS+ LR+++ I
Sbjct: 776 -------LENLPDT---LQNL--TSLETL---EVSGCLNVNEFPRVSTSIEVLRISETSI 820
Query: 595 IELPECLGQLSS-RSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645
E+P + LS RS+ + E +P SI +L L L +S C L S P
Sbjct: 821 EEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFP 872
|
|
| UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 270/797 (33%), Positives = 408/797 (51%)
Query: 9 EKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQ-MEF 67
E G+ L+ LLS +L + + G + + RL KKVLIV DD+ + +E+
Sbjct: 254 ENKRGMHSLQNALLSELLRE-KANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEY 312
Query: 68 LIGNQGWLMQGSRLIITARDKQVL-KNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNV 126
L G+ W GSR+IIT RDK ++ KN D IYEV L D ++ LF ++AFGK PN
Sbjct: 313 LAGDLDWFGNGSRIIITTRDKHLIEKN---DIIYEVTALPDHESIQLFKQHAFGKEVPNE 369
Query: 127 GYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDG 186
+ +LS +++ YAKG+PLA+KV G L R+ +W+S I+ +K + I LK+S+DG
Sbjct: 370 NFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDG 429
Query: 187 LDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILN-NKIMMHD 245
L+ ++Q +FLDIA F +GE+KD +++ L+ C AE G+ +L+DK L+ I N++ MHD
Sbjct: 430 LEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHD 489
Query: 246 LLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNA 305
L+Q+MG+ IV + KDPG+RSRLW +++ V++NNTGT A+E I + S + +
Sbjct: 490 LIQDMGKYIVNFQ--KDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVS-SYSSTLRFSN 546
Query: 306 GSFTNMHKLRFFKF--YSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPEN 363
+ NM +LR F S+HY ++ + N LR P +S S +
Sbjct: 547 QAVKNMKRLRVFNMGRSSTHYA--IDYLPN-------NLRCFVCTNYPWESFPSTFELKM 597
Query: 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE 423
LV L++ H+S++ LW + L +L+ I+LS S+ LT+ PD + NLE +N C+ L E
Sbjct: 598 LVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEE 657
Query: 424 THSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIE---E 480
H S+ +K++ L L C+SL +++ SL+ L L C +L PE+ ++ +
Sbjct: 658 VHHSLGCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQ 716
Query: 481 LSLDGTAIQEFPXXXXXXXXXXXXXXX-XXXXXXXXPSKICKLKSL-------------- 525
+ + G+ I+E P PS IC+LKSL
Sbjct: 717 IHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESL 776
Query: 526 -ERLNXXXXXXXXXXXGIAIREVPSSIACLKNLGRLSFESFM--CHEQMGLLLPISFGLT 582
E + I PSSI L L L F F H + P++ GL
Sbjct: 777 PEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFP---PVAEGLH 833
Query: 583 SLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCER 640
SL YL L+ C +I+ LPE +G LSS L L +NNFE +P SI QL L SL + C+R
Sbjct: 834 SLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQR 893
Query: 641 LHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIK 700
L LPELP +L+++ C AL + L T+ KL + +L +
Sbjct: 894 LTQLPELPPELNELHVDCHM---ALKFIHYLVTKRK------------KLHRVKLDDAHN 938
Query: 701 DAQRKMQLKATAWWEELEKQHCEVPRG----MICFPGSELPE----WFMFQSMGSSATFN 752
D L A ++ + ++ + F G PE WF Q SS + N
Sbjct: 939 DTM--YNLFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQGWDSSVSVN 996
Query: 753 LPPDWFSYN-FVGFALC 768
LP +W+ + F+GFA+C
Sbjct: 997 LPENWYIPDKFLGFAVC 1013
|
|
| TAIR|locus:2081790 AT3G51560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
Identities = 162/406 (39%), Positives = 230/406 (56%)
Query: 47 LSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELF 106
L K+VL+V DDV E +G W GS +IIT+RDKQV C VD IYEV L
Sbjct: 258 LRHKRVLVVLDDVCKPLDAESFLGGFDWFCPGSLIIITSRDKQVFSICRVDQIYEVPGLN 317
Query: 107 DDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIK 166
+++A LFSR AFGK + +LS K+I YA G PLA+ G + + K E
Sbjct: 318 EEEALQLFSRCAFGKEIIHESLQKLSKKVIDYANGNPLALIFFG-CMSRKNPKPIEIAFP 376
Query: 167 KIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGIS 226
K+K+ +I +K ++D L E+N+FLDIA F+GE+ DCVI L+GCGF + I+
Sbjct: 377 KVKKYLAHEIHDAVKSTYDSLSSNEKNIFLDIACLFRGENVDCVIHLLEGCGFFPRVEIN 436
Query: 227 VLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKR-SRLWHHEDIYNVLTNNT-- 283
VLV+KCL+ + +++MH+L+Q +GR+I+ + GKR SRLW I L +
Sbjct: 437 VLVEKCLVSMAEGRVVMHNLIQSIGRKII------NGGKRRSRLWKPLIIKYFLEDRQVL 490
Query: 284 GTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLEST--E 341
G+E IE I LD S + +N +F NM+ LR+ K SS+ G N +H +G++S E
Sbjct: 491 GSEDIEAIFLDPSALS-FDVNPMAFENMYNLRYLKICSSNPG-NHYALHLPKGVKSLPEE 548
Query: 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKI 401
LR L W PL SL NLV L M +S +++LW+G + L LK I L HS+ L I
Sbjct: 549 LRLLHWEHFPLLSLPQDFNTRNLVILNMCYSKLQRLWEGTKELGMLKRIMLCHSQQLVGI 608
Query: 402 PDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTS 447
+L +A N+E ++ QGC L+ + + L V+NL C + S
Sbjct: 609 QELQIALNMEVIDLQGCA-RLQRFLATGHFQHLRVINLSGCIKIKS 653
|
|
| TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 2.3e-80, P = 2.3e-80
Identities = 201/564 (35%), Positives = 282/564 (50%)
Query: 268 RLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGEN 327
RLW EDI ++LT GT+ I GI LD SK++ + L+A +F M+ L++ K Y SH
Sbjct: 521 RLWDSEDICDLLTEGLGTDKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRG 580
Query: 328 VN---KVHNFRGLE--STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQ 382
K+H RGL EL YL WHG PL+S+ P+NLV L++PHS ++++W +
Sbjct: 581 CEAEFKLHLRRGLSFLPNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEK 640
Query: 383 RLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442
+ LK ++LSHS +L + L+ A NLE LN +GCT L + S+I L KL+ LNL+ C
Sbjct: 641 DVGMLKWVDLSHSINLRQCLGLANAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDC 700
Query: 443 RSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPXXXXXXXXXX 502
SL SL I SL+ LILSGCS+L FP +S N+E L LDGT I+ P
Sbjct: 701 TSLRSLPKGIKTQSLQTLILSGCSSLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLA 760
Query: 503 XXXXXXXXXXXXXPSKICKLKSLERLNXXXXXXXXXXXGI---------------AIREV 547
S + KLK L+ L I +I E+
Sbjct: 761 LLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEM 820
Query: 548 PSSIACLKNLGRLSFESFMCHEQMGLL-LPISFGLTSLTYLRLTDCGIIELPECLGQLSS 606
P + L N+ S H + + +P + G + LT L L+ C + +LP+ +G LSS
Sbjct: 821 PKMMH-LSNIKTFSLCGTSSHVSVSMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSS 879
Query: 607 RSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALS 666
L L NN E +PES QL++L + C+ L SLP LP +L ++AH C SLE L+
Sbjct: 880 LQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLA 939
Query: 667 GLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPR 726
T F F NC+KL+++ ++ A+ K QL A A + + P
Sbjct: 940 NPLTPLTVGERIHSMFIFSNCYKLNQDAQASLVGHARIKSQLMANASAKRYYRGFVPEPL 999
Query: 727 GMICFPGSELPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRXXXXXXXXFQVF 786
IC+P +E+P WF Q +G S LPP W NFVG AL VV F+ F V
Sbjct: 1000 VGICYPATEIPSWFCHQRLGRSLEIPLPPHWCDINFVGLALSVVVSFKDYEDSAKRFSVK 1059
Query: 787 CECKLKTEDGLCRVAVGHLTGWSD 810
C + +D L GW++
Sbjct: 1060 CCGNFENKDSSFTRFDFTLAGWNE 1083
|
|
| TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 2.3e-96, Sum P(2) = 2.3e-96
Identities = 176/491 (35%), Positives = 258/491 (52%)
Query: 50 KKVLIVFDDVSTSEQM-EFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDD 108
KKV+IVFDDVS +Q+ E L G W+ +GS ++IT RDK + + D +YEV L +
Sbjct: 317 KKVVIVFDDVSDKKQISEPLKGICDWIKKGSMIVITTRDKSLTEGLVTD-LYEVPGLNER 375
Query: 109 DARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKI 168
D LF R N +MELS K + +A+G PLA++ G+ L G+ WE+ + +
Sbjct: 376 DGLELF-RAQVCCNIEG-NFMELSRKFVDFARGNPLALEEFGKELRGKDEAHWETRLGTL 433
Query: 169 KRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCG-FSAEIGISV 227
+ + I++ L+ S+D L++++++ FLDIA FF+ +D+ V LD SAE G
Sbjct: 434 AQHSNPTIREKLRSSYDELNEQQKDAFLDIAYFFRSQDESYVRSLLDSYDPESAESGQEF 493
Query: 228 --LVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYN--VLTNNT 283
L DK L+ + + ++ MHDLL M +EIV + K R L ++ N + +
Sbjct: 494 RDLADKFLIGVCDGRVEMHDLLFTMAKEIVEATAEKS---RLLLSSCAELKNKELSLDQQ 550
Query: 284 GTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSS---HYGENVNKVHNFRGLEST 340
G + + GI LDMS+++E L F M LR+ K YSS + + K+H GLE
Sbjct: 551 GRDKVRGIVLDMSEMEEKPLKRAVFVGMSSLRYLKVYSSLCPTHSKTECKLHLPDGLEFP 610
Query: 341 E---LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEH 397
+ +R L W P L P NL+ L +P+S+I LW + NLK ++LSHS +
Sbjct: 611 KDNIVRCLHWVKFPGTELPPDFYPNNLIDLRLPYSNITTLWSCTKVAPNLKWVDLSHSSN 670
Query: 398 LTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSL 457
L + LS A NL LN +GCT L E ++ + LV LNL+ C SL SL I SL
Sbjct: 671 LNSLMGLSEAPNLLRLNLEGCTSLKELPDEMKDMTNLVFLNLRGCTSLLSLP-KITTNSL 729
Query: 458 KKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPXXXXXXXXXXXXXXXXXXXXXXXPS 517
K LILSGCS+ +F +S ++E L L+GT I P P
Sbjct: 730 KTLILSGCSSFQTFEVISEHLESLYLNGTEINGLPPAIGNLHRLIFLNLKDCKNLATLPD 789
Query: 518 KICKLKSLERL 528
+ +LKSL+ L
Sbjct: 790 CLGELKSLQEL 800
|
|
| TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 645 (232.1 bits), Expect = 3.3e-95, Sum P(3) = 3.3e-95
Identities = 176/509 (34%), Positives = 273/509 (53%)
Query: 1 IQNVSEESEKSGGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVS 60
IQ++ S K GL L +LL +L I L KVL+V DDVS
Sbjct: 264 IQDIRRTS-KEHGLDCLPALLLEELLGVTIPDIESTRCAYESYKMELHTHKVLVVLDDVS 322
Query: 61 TSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFG 120
EQ++ L+G W+ QGSR++I DK ++++ D Y V +L D F RYAF
Sbjct: 323 DKEQIDVLLGRCNWIRQGSRIVIATSDKSLIQDVA-DYTYVVPQLNHKDGLGHFGRYAFD 381
Query: 121 KN---YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQ 177
++ + N M+LS + + Y +G PL +K+LG L G+ W++ + + I+
Sbjct: 382 RHSNIHNNEVIMKLSKEFVHYGRGHPLVLKLLGADLNGKDEDHWKTKLATLAENSSHSIR 441
Query: 178 KVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVIL 237
VL+VS+D L +++FLDIA F + ED+ + LD ++EI L++K ++ +
Sbjct: 442 DVLQVSYDELSQVHKDIFLDIACF-RSEDESYIASLLDSSEAASEI--KALMNKFMINVS 498
Query: 238 NNKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTN-NTGTEAIEGISLDMS 296
+++ MHDLL RE+ R+ +D + RLWHH+DI +VL N G E + GI L+M+
Sbjct: 499 EDRVEMHDLLYTFARELCRRAYAQDGREPHRLWHHQDITDVLKNIEEGAE-VRGIFLNMN 557
Query: 297 KVK-EIHLNAGSFTNMHKLRFFKFYSSHYGENV---NKVHNFRGLEST--ELRYLQWHGC 350
++K E+ L++ +F +M LR+ K YSSH + NK++ GL E+RYL W
Sbjct: 558 EMKREMSLDSCTFKSMCGLRYLKIYSSHCPQQCKPNNKINLPDGLNFPLKEVRYLHWLEF 617
Query: 351 PLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQR--LVNLKHINLSHSEHLTKIPDLSLAT 408
PLK + P+NLV L++PHS I+++W + LK +NLSHS +L I LS A
Sbjct: 618 PLKEIPPDFNPQNLVDLKLPHSKIERIWSDDKHKDTPKLKWVNLSHSSNLWDISGLSKAQ 677
Query: 409 NLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNL 468
L LN +GCT L ++ I ++ L +L L +C +L +L+ L L G S +
Sbjct: 678 RLVFLNLKGCTSL-KSLPEINLVS-LEILILSNCSNLKEFRVISQ--NLETLYLDGTS-I 732
Query: 469 MSFPELSCNIEE----LSLDGTA-IQEFP 492
P L+ NI + L++ G A ++EFP
Sbjct: 733 KELP-LNFNILQRLVILNMKGCAKLKEFP 760
|
|
| TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 3.7e-94, Sum P(3) = 3.7e-94
Identities = 220/658 (33%), Positives = 337/658 (51%)
Query: 38 IGLNFRSK--RLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCG 95
+G N + + +K++LIV D+V + + W GS +IIT+RDKQVL CG
Sbjct: 100 LGENINNSFIKSGQKRLLIVLDNVLKPLDADAFLNGFDWFGPGSLIIITSRDKQVLVQCG 159
Query: 96 VDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYME-LSNKII--KYAKGVPLAIKVLGRF 152
V+ IYEV+ L D+A+ L AFG ++ +E L+ I KY G PLA+ +
Sbjct: 160 VNQIYEVEGLNKDEAKQLLHGCAFGIDWRKQSGLETLAPYYISVKYFSGNPLALSLYEEM 219
Query: 153 LCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIK 212
L + E + K+ P I +V K +++ L++ E+++FLDIA FF+GE D V++
Sbjct: 220 LSHMKSDKMEVKLLKLNH-PPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKADYVMQ 278
Query: 213 FLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHH 272
+GCGF +GI VLVDKCL+ I+ K+ MH+L+Q +G+ I + ++ + + RLW
Sbjct: 279 LFEGCGFFPHVGIYVLVDKCLVTIVKRKMEMHNLIQIVGKAISNEGTV-ELDRHVRLWDT 337
Query: 273 EDIYNVL----TNNTG-----TEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSH 323
I +L T G TE IE I LDMS +K + +F +MH LRF K YSS+
Sbjct: 338 SIIQPLLEDEETKLKGESKGTTEDIEVIFLDMSNLK-FFVKPDAFKSMHNLRFLKIYSSN 396
Query: 324 YGENVNKVHNFRGLES--TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGV 381
G++ ++ L+S ELR L W PL+SL P +LV L MP+S +++LW G
Sbjct: 397 PGKH-QRIRFREALQSLPNELRLLHWEDYPLQSLPQHFDPTHLVELNMPYSKLQKLWGGT 455
Query: 382 QRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKH 441
+ L LK + LSHS+ L +I +L + N+E ++ QGCT +++ + ++L L V+NL
Sbjct: 456 KNLEMLKMVRLSHSQDLVEIEELIKSKNIEVIDLQGCT-KIQSFPATRHLQHLRVINLSG 514
Query: 442 CRSLTSLSTSIHLG---SLKKLILSGCS--NLMSFPELSCNIEELSLDGTA-IQEFPXXX 495
C + S G +LK+L LSG + S LS ++E L L +Q P
Sbjct: 515 CVEIKSTQLEEFQGFPRNLKELYLSGTGIREVTSSIHLS-SLEVLDLSNCKRLQNLPMGK 573
Query: 496 XXXXXXXXXXXXXXXXXXXXPSKICKLKSLERLNXXXXXXXXXXXGIAIREVPSSIACLK 555
S KL++++ L G +IREVPSSI L
Sbjct: 574 GNLASLIKLML----------SGCSKLQNIQDLPTNLKELYLA--GTSIREVPSSICHLT 621
Query: 556 NLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGIIE-LPECLGQLSSRSILLLE 613
L + F++ C + L P+ G L SLT L L+ C + +P+ L R + L E
Sbjct: 622 QL--VVFDAENCKKLQDL--PMGMGNLISLTMLILSGCSELRSIPDLPRNL--RHLNLAE 675
Query: 614 KNNFERIPESIIQLSHLFSLGISHCERLHSLP-ELPCDLSDIEAHCCSSLEALSGLSI 670
+++P S L+ L SL ++HCERL L E + ++ C L+ + G S+
Sbjct: 676 -TPIKKLPSSFEDLTKLVSLDLNHCERLQHLQMESFESVVRVDLSGCLELKYILGFSL 732
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00038645001 | SubName- Full=Chromosome chr18 scaffold_96, whole genome shotgun sequence; (1126 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 909 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-130 | |
| pfam00931 | 285 | pfam00931, NB-ARC, NB-ARC domain | 8e-20 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-07 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-07 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 418 bits (1077), Expect = e-130
Identities = 296/897 (32%), Positives = 440/897 (49%), Gaps = 77/897 (8%)
Query: 16 HLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWL 75
HL++ LS ILD ++ I L +RL +KVLI DD+ + ++ L G W
Sbjct: 266 HLQRAFLSEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWF 321
Query: 76 MQGSRLIITARDKQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKI 135
GSR+I+ +DK L+ G+D IYEV ++ A +F R AF KN P G+MEL++++
Sbjct: 322 GSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEV 381
Query: 136 IKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDD-EEQNL 194
A +PL + VLG +L GR +DW + +++ I+K L+VS+DGL++ +++ +
Sbjct: 382 ALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAI 441
Query: 195 FLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREI 254
F IA F GE + + L IG+ LVDK L+ + + + MH LLQEMG+EI
Sbjct: 442 FRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEI 501
Query: 255 VRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKL 314
VR +S +PG+R L +DI +VL +NTGT+ + GI+LD+ ++ E+H++ +F M L
Sbjct: 502 VRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNL 560
Query: 315 RFFKFYSSHYGENVNKV--HNFRGLE--STELRYLQWHGCPLKSLSSKIPPENLVSLEMP 370
F KFY+ + + +V H G + +LR L+W PL+ + S PENLV L+M
Sbjct: 561 LFLKFYTKKWDQK-KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ 619
Query: 371 HSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQY 430
S +++LW GV L L++I+L S++L +IPDLS+ATNLE+L C+ L+E SSIQY
Sbjct: 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY 679
Query: 431 LNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQE 490
LNKL L++ C +L L T I+L SL +L LSGCS L SFP++S NI L LD TAI+E
Sbjct: 680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE 739
Query: 491 FPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGI-AIREVPS 549
FPS++ RL +L L L ++ E L ++ L L + L+ +L L I ++ E+PS
Sbjct: 740 FPSNL-RLENLDELILCE-MKSEKLWERVQPLTPLMTM-LSPSLTRLFLSDIPSLVELPS 796
Query: 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSR-S 608
SI L L L E+ + E LP L SL L L+ C + +S+ S
Sbjct: 797 SIQNLHKLEHLEIENCINLET----LPTGINLESLESLDLSGCSRL---RTFPDISTNIS 849
Query: 609 ILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALS-- 666
L L + E +P I + S+L L ++ C L + L +E S AL+
Sbjct: 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909
Query: 667 ---GLSILFTQTSWNSQFFY-------FVNCFKLDKNELKEIIKDAQRKMQLKATAWWEE 716
G + N F+NCF LD + +++ QL
Sbjct: 910 SWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD---QEALLQQQSIFKQLI------- 959
Query: 717 LEKQHCEVPRGMICFPGSELPEWFMFQSMGSSAT-FNLPPDWFSYNFVGFALCAVVGFRD 775
G E+P +F ++ G+S T L F F CAVV
Sbjct: 960 --------------LSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSES 1005
Query: 776 HHDDGGGFQVFCECKLKTEDGLCRVAVGHL--TGWSDGYRGPRYIGSDHVFLGFDFYMFS 833
F + C+ G H + + GS V F +
Sbjct: 1006 FFIISVSFDIQVCCRFIDRLG------NHFDSPYQPHVFSVTK-KGSHLVIFDCCFPLNE 1058
Query: 834 DG--FDEYYYSDEVFIQFYL--EDCCEVTK-CGIHLLYAQDFSDSTEDSVWNFSSDE 885
D E Y D V IQF L ++ K CGI L +D S +D+
Sbjct: 1059 DNAPLAELNY-DHVDIQFRLTNKNSQLKLKGCGIRLS--EDDSSLNNTLPNVEEADD 1112
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 8e-20
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 10/185 (5%)
Query: 45 KRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGV-DTIYEVK 103
+ L RK+ L+V DDV + + GSR+I+T R + V G +EV+
Sbjct: 95 EALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTRSESVAGRMGGTSKPHEVE 154
Query: 104 ELFDDDARMLFSRYAFGKNYPNVGYME-LSNKIIKYAKGVPLAIKVLGRFL-CGRRIKDW 161
L +++ LFS F K P +E ++ +I++ KG+PLA+KVLG L +++W
Sbjct: 155 SLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEW 214
Query: 162 ESTIKKIKRIPH-----VDIQKVLKVSFDGLDDEEQNLFLDIASFFKGED--KDCVIKFL 214
E ++++ ++ +L +S+D L + FL +A F + + K+ +IK
Sbjct: 215 EHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLW 274
Query: 215 DGCGF 219
GF
Sbjct: 275 IAEGF 279
|
Length = 285 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 7e-08
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 23/216 (10%)
Query: 466 SNLMSFPELSCN------IEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI 519
+ +S + S N + L L+ ++ S + L++L L+L N + I
Sbjct: 77 PSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDN--------NNI 128
Query: 520 CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF 579
+ L L L LKEL I +PS + L NL L + L +
Sbjct: 129 TDIPPLIGL-LKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS----FNDLSDLPKLLS 183
Query: 580 GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH-- 637
L++L L L+ I +LP + LS+ L L N+ + S+ L +L L +S+
Sbjct: 184 NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK 243
Query: 638 CERLHSLPELPCDLSDIEAHCC--SSLEALSGLSIL 671
E L +L ++ SS+ +L L+ L
Sbjct: 244 LEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNL 279
|
Length = 394 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 67/327 (20%), Positives = 115/327 (35%), Gaps = 22/327 (6%)
Query: 306 GSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLV 365
+ N+ L + N++++ L S +L + L NL
Sbjct: 87 ENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNN--ITDIPPLIGL-LKSNLK 143
Query: 366 SLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDL-SLATNLESLNFQGCTCLLET 424
L++ + I+ L ++ L NLK+++LS + L+ +P L S +NL +L+ G + +
Sbjct: 144 ELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDL 201
Query: 425 HSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG--CSNLMSFPELSCNIEELS 482
I+ L+ L L+L + + LS+ +L +L L LS +L N+E L
Sbjct: 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261
Query: 483 LDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGI 542
L I S + L GN L + L LNL LK L+ +
Sbjct: 262 LSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELK-- 319
Query: 543 AIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLG 602
+SI N+ S L I L +L L +
Sbjct: 320 -----LNSILLNNNILSNGETSSP------EALSILESLNNLWTLDNALDESNLNRYIVK 368
Query: 603 QLSSRSILLLEKNNFERIPESIIQLSH 629
++ LL+ +
Sbjct: 369 NPNA-IGSLLDLVKKHVNQLLEKVNYN 394
|
Length = 394 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 3e-07
Identities = 79/296 (26%), Positives = 128/296 (43%), Gaps = 59/296 (19%)
Query: 364 LVSLEMPHSSIK-QLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLL 422
+VS+++ +I ++ + RL ++ INLS+++ IPD +
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD----------------DIF 114
Query: 423 ETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELS 482
T SS++YLN S + + SI GS+ L SN M
Sbjct: 115 TTSSSLRYLN----------LSNNNFTGSIPRGSIPNLETLDLSNNM------------- 151
Query: 483 LDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGI 542
L G E P+ I SSL +L+LG + + +P+ + L SLE L LA +L
Sbjct: 152 LSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS--NQL----- 200
Query: 543 AIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGII-ELPEC 600
+ ++P + +K+L + ++ + + +P G LTSL +L L + +P
Sbjct: 201 -VGQIPRELGQMKSLKWI----YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255
Query: 601 LGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIE 655
LG L + L L +N IP SI L L SL +S +PEL L ++E
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE 311
|
Length = 968 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 909 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 100.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.96 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 99.96 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.88 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.87 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.85 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.84 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.84 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.8 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.74 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.72 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.67 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.65 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.58 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.56 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.42 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.4 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.34 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.32 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.19 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.18 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.79 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.75 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.7 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.66 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.65 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.56 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.52 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.52 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.5 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.48 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.47 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.4 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.33 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.2 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.15 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.12 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 98.1 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.06 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.04 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.02 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.01 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.99 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.86 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.77 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.73 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.56 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.52 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.32 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.28 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.99 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.93 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.62 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.43 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 96.24 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 96.22 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.19 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.14 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.14 | |
| PF05729 | 166 | NACHT: NACHT domain | 95.71 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.67 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 95.59 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 95.35 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 95.28 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 94.91 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.33 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 94.2 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.8 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 92.97 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 92.6 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 92.57 | |
| PF13173 | 128 | AAA_14: AAA domain | 92.56 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.1 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 92.07 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 90.68 | |
| PRK09087 | 226 | hypothetical protein; Validated | 90.57 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 89.9 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 89.7 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 89.42 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 88.44 | |
| PF07725 | 20 | LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le | 87.68 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 87.46 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 86.96 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.62 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 85.92 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 85.0 | |
| PRK08727 | 233 | hypothetical protein; Validated | 84.85 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 84.03 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 81.96 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 81.96 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 81.57 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 81.11 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 80.44 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 80.36 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-98 Score=940.65 Aligned_cols=805 Identities=35% Similarity=0.562 Sum_probs=676.8
Q ss_pred hHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhh
Q 039311 14 LAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKN 93 (909)
Q Consensus 14 ~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~ 93 (909)
...+|+++++++++..+.++.. ...++++|++||+||||||||+.++|+.+.+...|+++|||||||||+++++..
T Consensus 264 ~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 264 KLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred hHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 4578999999998555544322 367899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHhcCCC
Q 039311 94 CGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPH 173 (909)
Q Consensus 94 ~~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~ 173 (909)
++++++|+|+.|+++|||+||+++||++..+.+++.+++++||++|+|+|||++++|+.|++++..+|++++++|++.++
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~ 419 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD 419 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999888
Q ss_pred cchhhhhhhcccCCCh-hhhhhheeeeeccCCCCHHHHHHHHHhcCCCcccchhHhhhccccEEeCCeEEehHHHHHHHH
Q 039311 174 VDIQKVLKVSFDGLDD-EEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGR 252 (909)
Q Consensus 174 ~~i~~~L~~sy~~L~~-~~k~cfl~~a~f~~~~~~~~li~~w~~~g~~~~~~i~~L~~~~li~~~~~~~~mhdll~e~~~ 252 (909)
.+|+++|++||++|++ .+|.||+||||||.+++.+++..++.++|+.++.+++.|++++||+...+++.|||++|+||+
T Consensus 420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r 499 (1153)
T PLN03210 420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGK 499 (1153)
T ss_pred HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHH
Confidence 8999999999999987 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCeeeeccchhHHHHhhcCCCCcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCc-Cccee
Q 039311 253 EIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGE-NVNKV 331 (909)
Q Consensus 253 ~i~~~~~~~~~~~~~rl~~~~~i~~~l~~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~-~~~~~ 331 (909)
+|+++++ .+|++++|+|.++++++++..++|++.+++|++|.+...++.+..++|.+|++|++|.++.+.... .....
T Consensus 500 ~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~ 578 (1153)
T PLN03210 500 EIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRW 578 (1153)
T ss_pred HHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccccee
Confidence 9999997 789999999999999999999999999999999999999999999999999999999998654221 12235
Q ss_pred ecCCCCC--CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccc
Q 039311 332 HNFRGLE--STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATN 409 (909)
Q Consensus 332 ~~~~~l~--~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~ 409 (909)
.++.++. +.+||+|+|.+|+++.+|..+.+.+|+.|+|+++.+..+|.+++.+++|+.|+|+++..++.+|+++.+++
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~ 658 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATN 658 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCc
Confidence 5667776 67899999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCcc
Q 039311 410 LESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQ 489 (909)
Q Consensus 410 L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~ 489 (909)
|++|++++|..+..+|.+++++++|+.|++++|..++.+|..+++++|+.|++++|..++.+|....+|+.|++++|.+.
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCEEeccCCCCCCcCcccc--------cCCCCCCeeecccccccccccCc-ceeecCccccccCCCCee
Q 039311 490 EFPSSIERLSSLILLNLGNCLRLEGLPSKI--------CKLKSLERLNLAEALKELKAEGI-AIREVPSSIACLKNLGRL 560 (909)
Q Consensus 490 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l--------~~L~~L~~L~l~~~l~~L~l~~~-~~~~lp~~i~~l~~L~~L 560 (909)
.+|..+ .+++|+.|.+.++... .++..+ ...++|+.|++ +++ .+..+|.+++.+++|+.|
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~L---------s~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFL---------SDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred cccccc-cccccccccccccchh-hccccccccchhhhhccccchheeC---------CCCCCccccChhhhCCCCCCEE
Confidence 999876 6899999999876532 122111 22345555555 554 456789999999999999
Q ss_pred ecCccccccccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 561 SFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
++++ |.++.. +|....+++|+.|+|++|... .+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+
T Consensus 808 ~Ls~--C~~L~~--LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 808 EIEN--CINLET--LPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ECCC--CCCcCe--eCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCC
Confidence 9998 776553 454447899999999999765 45543 468999999999999999999999999999999999
Q ss_pred CCcccCCCC---CCcCceecccCcccccccCcch---hcccc------CCCcceeEecccCCCCHHHHHHHHHHHHHHHH
Q 039311 640 RLHSLPELP---CDLSDIEAHCCSSLEALSGLSI---LFTQT------SWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQ 707 (909)
Q Consensus 640 ~L~~lp~l~---~sL~~L~i~~C~~L~~l~~~~~---l~~~~------~~~~~~l~~~~C~~L~~~~~~~~~~~~~~~~~ 707 (909)
+|+.+|..+ ++|+.|++.+|++|+.++.... ..... ......+.|.||++|++.+. .
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~---l-------- 949 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL---L-------- 949 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh---h--------
Confidence 999998644 4667789999999987754221 00000 00112346899999976542 0
Q ss_pred HHHhhHHHHHhhccccCCceEEEcCCCCCCCCccccCCccEEE-EEcCCCCCcCCcccceEEEEEcccCCCCCCCCeeEE
Q 039311 708 LKATAWWEELEKQHCEVPRGMICFPGSELPEWFMFQSMGSSAT-FNLPPDWFSYNFVGFALCAVVGFRDHHDDGGGFQVF 786 (909)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~g~a~c~v~~~~~~~~~~~~~~~~ 786 (909)
+. ......+++||.++|+||.||..|++++ |.+|+.|+...|.||++|+|+++....+....+.+.
T Consensus 950 ----------~~---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~ 1016 (1153)
T PLN03210 950 ----------QQ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQ 1016 (1153)
T ss_pred ----------cc---cccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEE
Confidence 00 0123468899999999999999999998 999999998889999999999988765545578899
Q ss_pred EEEEEecCCCcEEEEEeeeccccCCCCCCCccCCCeEEEecccccCccccc---ccCCCceEEEEEEEee---CcEEEEe
Q 039311 787 CECKLKTEDGLCRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYMFSDGFD---EYYYSDEVFIQFYLED---CCEVTKC 860 (909)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~v~~c 860 (909)
|.|.|.+..+..+........|. .....+|+++ |+.+.+...-. ....+++|+|+|.+.+ .++||+|
T Consensus 1017 ~~c~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~c 1089 (1153)
T PLN03210 1017 VCCRFIDRLGNHFDSPYQPHVFS------VTKKGSHLVI-FDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGC 1089 (1153)
T ss_pred EEEEEECCCCCccccCCCceeEe------eeccccceEE-ecccccccccccchhccCCceeeEEEEEecCCCCeEEEee
Confidence 99999987765443111111111 1233556654 22222211100 0134677889998876 4699999
Q ss_pred eeEEEEecCCCc
Q 039311 861 GIHLLYAQDFSD 872 (909)
Q Consensus 861 Gv~~~y~~~~~~ 872 (909)
||+++|+.+..+
T Consensus 1090 g~~~~~~~~~~~ 1101 (1153)
T PLN03210 1090 GIRLSEDDSSLN 1101 (1153)
T ss_pred eEEEeccCCCcc
Confidence 999999766543
|
syringae 6; Provisional |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=549.11 Aligned_cols=399 Identities=23% Similarity=0.257 Sum_probs=291.9
Q ss_pred hhhccCChHHHHHHHHHHHhc-CCCCcccCCccchHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEe
Q 039311 7 ESEKSGGLAHLRQILLSAILD-DGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITA 85 (909)
Q Consensus 7 ~s~~~~~~~~l~~~ll~~i~~-~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTT 85 (909)
||+. ++..++|++|+..+.. +......+.++.+..|.+.|++|||+|||||||+..+|+.++.+++...+||||++||
T Consensus 218 VSk~-f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTT 296 (889)
T KOG4658|consen 218 VSKE-FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTT 296 (889)
T ss_pred Eccc-ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEe
Confidence 6888 9999999999999874 2223333347889999999999999999999999999999999999888999999999
Q ss_pred CCchhhhh-cCCCcEEECCCCCHHHHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCC-CHHHHH
Q 039311 86 RDKQVLKN-CGVDTIYEVKELFDDDARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR-RIKDWE 162 (909)
Q Consensus 86 R~~~v~~~-~~~~~~y~l~~L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~-~~~~W~ 162 (909)
|++.||.. ++++..++++.|..+|||.||+++||... ...+.+.++|++||++|+|+|||++++|+.|++| +..||+
T Consensus 297 Rs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 297 RSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred ccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999 89999999999999999999999999874 4446689999999999999999999999999998 688999
Q ss_pred HHHHHHhcC-----C--CcchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCC------------Cc
Q 039311 163 STIKKIKRI-----P--HVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGF------------SA 221 (909)
Q Consensus 163 ~~l~~L~~~-----~--~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~------------~~ 221 (909)
++++.+... + .+.|..+|++|||.||.+.|.||+|||+||+++ +++.++..|+|+|| .|
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G 456 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVG 456 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcch
Confidence 999988765 2 345899999999999988999999999999999 89999999999998 45
Q ss_pred ccchhHhhhccccEEeC-----CeEEehHHHHHHHHHHhhhcccCCCCCeeeeccchhHHHHhhcCCCCcceeEEEeecC
Q 039311 222 EIGISVLVDKCLMVILN-----NKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMS 296 (909)
Q Consensus 222 ~~~i~~L~~~~li~~~~-----~~~~mhdll~e~~~~i~~~~~~~~~~~~~rl~~~~~i~~~l~~~~~~~~v~~i~l~~~ 296 (909)
..++.+|++++|+.... .+|.|||++||||.+++.+...+... .............+......++.+++-..
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~~~~~~~~~~~~~~~~~rr~s~~~~ 533 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN---QIVSDGVGLSEIPQVKSWNSVRRMSLMNN 533 (889)
T ss_pred HHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc---eEEECCcCccccccccchhheeEEEEecc
Confidence 66899999999999975 67999999999999999955433222 11111000000112222334455544444
Q ss_pred CceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCC-CCC-CCCccEEEeeCC-CCCccCCCC-CCCCeeEEEcCCC
Q 039311 297 KVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFR-GLE-STELRYLQWHGC-PLKSLSSKI-PPENLVSLEMPHS 372 (909)
Q Consensus 297 ~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~-~~~Lr~L~l~~~-~l~~lp~~~-~~~~L~~L~L~~~ 372 (909)
....+... .+.++|++|-+..|... ....+. .+. ++.||+|++++| .+..+|..+ .+-+|++|+++++
T Consensus 534 ~~~~~~~~----~~~~~L~tLll~~n~~~----l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 534 KIEHIAGS----SENPKLRTLLLQRNSDW----LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred chhhccCC----CCCCccceEEEeecchh----hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence 33222211 11224666666544310 000111 122 556666666644 345566655 3556666666666
Q ss_pred CccccccccccCCCCCEEecCCCcCCCcCCCC-Ccccccccccccc
Q 039311 373 SIKQLWKGVQRLVNLKHINLSHSEHLTKIPDL-SLATNLESLNFQG 417 (909)
Q Consensus 373 ~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~L~L~~ 417 (909)
.++.+|.++++|++|.+||+..+..+..+|.+ ..+++|++|.+..
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66666666666666666666655555555542 2355566555544
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=314.46 Aligned_cols=370 Identities=21% Similarity=0.239 Sum_probs=246.8
Q ss_pred cCCCCCeeeeccchhHHHHhhcCCC--CcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCC-
Q 039311 260 IKDPGKRSRLWHHEDIYNVLTNNTG--TEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRG- 336 (909)
Q Consensus 260 ~~~~~~~~rl~~~~~i~~~l~~~~~--~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~- 336 (909)
+.+|+++.+.|...+-+..+...+. ...+..+.+..+.+.. ..+.+|..+++|+.|++++|.+.+. ++..
T Consensus 41 ~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~~~~-----ip~~~ 113 (968)
T PLN00113 41 INDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQLSGP-----IPDDI 113 (968)
T ss_pred CCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCccCCc-----CChHH
Confidence 3456666677865433333332222 2345555544443322 2356788999999999998865421 2222
Q ss_pred C-CCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcc-ccccccccCCCCCEEecCCCcCCCcCCC-CCcccccccc
Q 039311 337 L-ESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIK-QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESL 413 (909)
Q Consensus 337 l-~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L 413 (909)
+ .+.+||+|++++|.+....+...+.+|++|++++|.+. .+|..++.+++|++|++++|.+...+|. ++++++|++|
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 2 36789999999888764333345778899999988886 6778888888999999988887777775 8888889999
Q ss_pred ccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCcc---ccCcceeeccccCcc
Q 039311 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPEL---SCNIEELSLDGTAIQ 489 (909)
Q Consensus 414 ~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~i~ 489 (909)
++++|.....+|..++.+++|++|++++|.....+|..+ ++++|++|++++|...+.+|.. ..+|+.|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 998888877888888888888888888877666677666 5888888888888776667654 345778888888776
Q ss_pred -ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc---------------ccccccccCccee-ecCcccc
Q 039311 490 -EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE---------------ALKELKAEGIAIR-EVPSSIA 552 (909)
Q Consensus 490 -~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~---------------~l~~L~l~~~~~~-~lp~~i~ 552 (909)
.+|.++.++++|+.|++++|...+.+|..+.++++|+.|++.. +|+.|++++|.+. .+|..++
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 5777788888888888888877777787778888888887733 3556666666654 5677777
Q ss_pred ccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCC
Q 039311 553 CLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHL 630 (909)
Q Consensus 553 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L 630 (909)
.+++|+.|++++|.. .+..+..+..+++|+.|++++|++. .+|..++.+++|+.|++++|+++ .+|..+..+++|
T Consensus 354 ~~~~L~~L~Ls~n~l---~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 354 KHNNLTVLDLSTNNL---TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred CCCCCcEEECCCCee---EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 777888888776332 2222222334445555555555444 24444455555555555555544 444444444444
Q ss_pred CEEeecCCC
Q 039311 631 FSLGISHCE 639 (909)
Q Consensus 631 ~~L~L~~c~ 639 (909)
+.|++++|.
T Consensus 431 ~~L~Ls~N~ 439 (968)
T PLN00113 431 YFLDISNNN 439 (968)
T ss_pred CEEECcCCc
Confidence 444444443
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-30 Score=276.78 Aligned_cols=211 Identities=24% Similarity=0.396 Sum_probs=170.6
Q ss_pred CChHHHHHHHHHHHhcCC-CC-cccCCccchHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCch
Q 039311 12 GGLAHLRQILLSAILDDG-NV-SIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQ 89 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~-~~-~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~ 89 (909)
....+++++|+.++.... .. ...+..+....+++.|+++|+||||||||+..+|+.+...++.+..|||||||||+++
T Consensus 61 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~ 140 (287)
T PF00931_consen 61 PSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRS 140 (287)
T ss_dssp SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGG
T ss_pred cccccccccccccccccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccc
Confidence 566889999999997431 12 3456667889999999999999999999999999999998888888999999999999
Q ss_pred hhhhcCC-CcEEECCCCCHHHHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCC-CHHHHHHHHH
Q 039311 90 VLKNCGV-DTIYEVKELFDDDARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR-RIKDWESTIK 166 (909)
Q Consensus 90 v~~~~~~-~~~y~l~~L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~-~~~~W~~~l~ 166 (909)
|+..++. ...|+|++|+.+||++||++.|+... ...+...+++++|+++|+|+|||++++|++|+.+ +..+|+++++
T Consensus 141 v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~ 220 (287)
T PF00931_consen 141 VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALE 220 (287)
T ss_dssp GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9988865 68999999999999999999998766 4456667899999999999999999999999654 6789999998
Q ss_pred HHhcCC------CcchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcc
Q 039311 167 KIKRIP------HVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAE 222 (909)
Q Consensus 167 ~L~~~~------~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~ 222 (909)
++.... ...+..++.+||+.||++.|.||+|||+||.++ +++.++++|.++||+..
T Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 221 ELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 876543 355999999999999999999999999999997 69999999999998654
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=298.99 Aligned_cols=357 Identities=19% Similarity=0.193 Sum_probs=173.5
Q ss_pred ccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC-ccCCCC-CCCCeeEEEcCCCCcc-cccccc
Q 039311 306 GSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK-SLSSKI-PPENLVSLEMPHSSIK-QLWKGV 381 (909)
Q Consensus 306 ~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~lp~~~ 381 (909)
..|.++++|++|++.+|.+.. ..+..+. +++|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVG-----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred hHHhcCCCCCEEECccCcccc-----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 344555555555555443321 1112222 445555555555443 234333 4445555555555444 344445
Q ss_pred ccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcE
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKK 459 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 459 (909)
+++++|++|++++|.+.+.+|. ++++++|++|++++|.....+|.+++.+++|++|++++|.....+|..+ ++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 5555555555555544444443 4455555555555544444444445555555555555443333333332 2444444
Q ss_pred EEccCC------------------------CCCcccCcc---ccCcceeeccccCcc-ccCcccccCCCCCEEeccCCCC
Q 039311 460 LILSGC------------------------SNLMSFPEL---SCNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLR 511 (909)
Q Consensus 460 L~Ls~c------------------------~~l~~lp~~---~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~ 511 (909)
|++++| ...+.+|.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|..
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 444444 433333332 123444444444443 3444444444444444444444
Q ss_pred CCcCcccccCCCCCCeeeccc---------------ccccccccCcceee-cCccccccCCCCeeecCccccc-------
Q 039311 512 LEGLPSKICKLKSLERLNLAE---------------ALKELKAEGIAIRE-VPSSIACLKNLGRLSFESFMCH------- 568 (909)
Q Consensus 512 l~~lp~~l~~L~~L~~L~l~~---------------~l~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~------- 568 (909)
.+.+|..++.+++|+.|++.. +++.+++++|.+.. +|..+..+++|+.|++++|...
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 444455555555555555422 23334444443332 2333344445555555442111
Q ss_pred -------------cccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEE
Q 039311 569 -------------EQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSL 633 (909)
Q Consensus 569 -------------~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L 633 (909)
.+.+..+..+..+++|+.|+|++|.+. .+|..++++++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 011111112334555666666666555 35666666666666777666666 566666667777777
Q ss_pred eecCCCCCcccCCC---CCCcCceecccCcccccccC
Q 039311 634 GISHCERLHSLPEL---PCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 634 ~L~~c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~ 667 (909)
+|++|+....+|.. ..+|+.|++++|+-...+|.
T Consensus 553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 77776665566642 34567777777766555554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-26 Score=245.58 Aligned_cols=331 Identities=21% Similarity=0.243 Sum_probs=212.0
Q ss_pred eeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC--ccCCCC-CCCC
Q 039311 288 IEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK--SLSSKI-PPEN 363 (909)
Q Consensus 288 v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~--~lp~~~-~~~~ 363 (909)
++.+.++...+..+ ++.++.+.+|.+|.+..|.+... ...+. ++.||.+.+..|.++ .+|..+ .++.
T Consensus 34 ~~WLkLnrt~L~~v---PeEL~~lqkLEHLs~~HN~L~~v------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQV---PEELSRLQKLEHLSMAHNQLISV------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred eeEEEechhhhhhC---hHHHHHHhhhhhhhhhhhhhHhh------hhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 34444444444333 24455566666666665543221 22223 566666666666653 455444 6667
Q ss_pred eeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEecccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
|..|||++|.+++.|.++..-+++-+|+||+|++ ..+|. +.+++.|-.|+|++| .+..+|+.+..|.+|++|.|++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCC
Confidence 7777777777777777666666777777776653 33443 556666667777664 3566666666777777777766
Q ss_pred ccC----ccccCccccCCcCcEEEccCCCC-CcccCcc---ccCcceeeccccCccccCcccccCCCCCEEeccCCCCCC
Q 039311 442 CRS----LTSLSTSIHLGSLKKLILSGCSN-LMSFPEL---SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLE 513 (909)
Q Consensus 442 c~~----l~~lp~~~~l~~L~~L~Ls~c~~-l~~lp~~---~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~ 513 (909)
|.. ++.+| .+++|++|.+++... +..+|.. +.||..++++.|.+..+|..+-++++|+.|+|++|+. +
T Consensus 183 NPL~hfQLrQLP---smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-t 258 (1255)
T KOG0444|consen 183 NPLNHFQLRQLP---SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-T 258 (1255)
T ss_pred ChhhHHHHhcCc---cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-e
Confidence 542 22222 356666666665422 2334432 3355566666666666666666666666666666532 2
Q ss_pred cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccC-ccCCCCCCCEEecCCC
Q 039311 514 GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLP-ISFGLTSLTYLRLTDC 592 (909)
Q Consensus 514 ~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~ 592 (909)
.+....+...+ ++.|.++.|.++.+|..+.++++|+.|.+.+| .+.-..+| .++.+..|+.+...+|
T Consensus 259 eL~~~~~~W~~---------lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N---kL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 259 ELNMTEGEWEN---------LETLNLSRNQLTVLPDAVCKLTKLTKLYANNN---KLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred eeeccHHHHhh---------hhhhccccchhccchHHHhhhHHHHHHHhccC---cccccCCccchhhhhhhHHHHhhcc
Confidence 23333333344 44445577788889999999999999888763 23222334 4777889999999999
Q ss_pred CCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 593 GIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 593 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
.+.-+|++++.++.|+.|.|+.|++.++|+.|.-|+.|+.|++..+++|.--|
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 88888999999999999999999999999999999999999999998887554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=251.37 Aligned_cols=313 Identities=26% Similarity=0.369 Sum_probs=257.7
Q ss_pred cccCC-CCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCC-Ccccccccccc
Q 039311 307 SFTNM-HKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHS-SIKQLWKGVQR 383 (909)
Q Consensus 307 ~f~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~-~i~~lp~~~~~ 383 (909)
.|..+ .+||.|.+.++.... ++..+.+.+|+.|++.++.++.+|..+ .+.+|++|+|+++ .++.+|. +..
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~------lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRC------MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred chhhcCcccEEEEecCCCCCC------CCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 34444 579999998765433 334445789999999999999999877 7899999999986 4777874 788
Q ss_pred CCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEc
Q 039311 384 LVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLIL 462 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 462 (909)
+++|++|+|++|..+..+|. +..+++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|.. .++|+.|++
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L 732 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDL 732 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeec
Confidence 99999999999998988886 8999999999999999999999877 7999999999999998888753 578999999
Q ss_pred cCCCCCcccCcc--ccCcceeeccccCccccCcc--------cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc
Q 039311 463 SGCSNLMSFPEL--SCNIEELSLDGTAIQEFPSS--------IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE 532 (909)
Q Consensus 463 s~c~~l~~lp~~--~~~L~~L~L~~~~i~~lp~~--------i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~ 532 (909)
+++. +..+|.. +.+|++|.+.++....++.. ....++|+.|+|++|..+..+|..++++++|+.|++..
T Consensus 733 ~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 733 DETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 9865 5677764 46788888877543333222 23357899999999999999999999999999999864
Q ss_pred ccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEEC
Q 039311 533 ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLL 612 (909)
Q Consensus 533 ~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L 612 (909)
| ..++.+|..+ .+++|+.|++++ |..+.. +|. ..++|+.|+|++|.+.++|.++..+++|+.|++
T Consensus 812 C--------~~L~~LP~~~-~L~sL~~L~Ls~--c~~L~~--~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 812 C--------INLETLPTGI-NLESLESLDLSG--CSRLRT--FPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred C--------CCcCeeCCCC-CccccCEEECCC--CCcccc--ccc--cccccCEeECCCCCCccChHHHhcCCCCCEEEC
Confidence 4 2356677766 789999999999 765532 222 247899999999999999999999999999999
Q ss_pred CCC-CCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 613 EKN-NFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 613 ~~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
++| ++..+|..+..+++|+.|++++|..|+.++
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 995 677999999999999999999999998654
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-25 Score=238.14 Aligned_cols=341 Identities=22% Similarity=0.337 Sum_probs=222.3
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCE
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKH 389 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~ 389 (909)
+-.|-.++++|.+.+ ..++.+.. ++.+++|.+....+..+|... .+.+|+.|.+.+|++.++-.++..|+.||.
T Consensus 7 pFVrGvDfsgNDFsg----~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSG----DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCC----CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 334555666554432 23444444 677777777777777777766 667777777777777777767777777777
Q ss_pred EecCCCcCC--CcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCC
Q 039311 390 INLSHSEHL--TKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGC 465 (909)
Q Consensus 390 L~Ls~~~~l--~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c 465 (909)
+++++|+.- +.++++-.+..|..|+|+.|+ +.++|..+.+-+++-.|+|++ +++..+|... +++.|-.|+||+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~- 159 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN- 159 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-
Confidence 777766532 233346677777777777753 566777777777777777777 4466666654 577777777776
Q ss_pred CCCcccCcc---ccCcceeeccccCccccC-cccccCCCCCEEeccCCCC-CCcCcccccCCCCCCeeeccccccccccc
Q 039311 466 SNLMSFPEL---SCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLR-LEGLPSKICKLKSLERLNLAEALKELKAE 540 (909)
Q Consensus 466 ~~l~~lp~~---~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~-l~~lp~~l~~L~~L~~L~l~~~l~~L~l~ 540 (909)
+.+..+|.- +.+|+.|.|++|.+..+. ..+..+++|+.|.+++... +..+|.++..|.+|..+++ +
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl---------S 230 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL---------S 230 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc---------c
Confidence 345555543 335667777776554110 1122455666666665433 3446666666666666655 4
Q ss_pred CcceeecCccccccCCCCeeecCccccccc-------------------cccccCccCCCCCCCEEecCCCCCC--Cccc
Q 039311 541 GIAIREVPSSIACLKNLGRLSFESFMCHEQ-------------------MGLLLPISFGLTSLTYLRLTDCGII--ELPE 599 (909)
Q Consensus 541 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-------------------~~~~~~~~~~l~~L~~L~Ls~~~l~--~lp~ 599 (909)
.|.+..+|..+-++++|+.|+|++|....+ ....+..++.++.|+.|.+.+|++. .+|.
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 444555555555555555555555332221 1112223566778888888888776 5888
Q ss_pred ccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccCcc
Q 039311 600 CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSGLS 669 (909)
Q Consensus 600 ~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~~ 669 (909)
.++.|..|+.+...+|++.-+|+++..|++|+.|.|++ +.|..+|+ +.+.|+.|+++..|+|.--|-+.
T Consensus 311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 88888888888888888888888888899999999986 46778887 67789999999999997655543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-23 Score=222.44 Aligned_cols=328 Identities=22% Similarity=0.209 Sum_probs=198.2
Q ss_pred EeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEE
Q 039311 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLE 368 (909)
Q Consensus 292 ~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~ 368 (909)
.+|+++.+--++....|.++.+|+.+++..|.+...+ .... ..+|+.|++.+|.+.++.+.- .+..|+.||
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP------~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP------RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcc------cccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3555555555555666677777777777666543221 1112 345666666666665554433 345666666
Q ss_pred cCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCcc
Q 039311 369 MPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT 446 (909)
Q Consensus 369 L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~ 446 (909)
|+.|.|.++|. .+..-.++++|+|++|++.+.-.+ |..+.+|.+|.|+.|....--+.++..|++|+.|+|..|. ++
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-ee
Confidence 66666666663 344445666666666665444333 6666666666666655443333455556677777666643 33
Q ss_pred ccCcc-c-cCCcCcEEEccCCCCCcccCc----cccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcccc
Q 039311 447 SLSTS-I-HLGSLKKLILSGCSNLMSFPE----LSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 447 ~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
..... + ++++|+.|.+..|. +..+.+ .+.+|++|+|+.|++..+. .|+-+|+.|+.|++++|.....-++..
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 33221 1 46666666666542 222222 2346677777777777664 346667777777777776655555556
Q ss_pred cCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC---
Q 039311 520 CKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII--- 595 (909)
Q Consensus 520 ~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~--- 595 (909)
...++|+.|++ +.|.++.+++ ++..+..|+.|.|++|....+. -..+.++.+|++|+|++|.+.
T Consensus 314 sftqkL~~LdL---------s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~---e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 314 SFTQKLKELDL---------SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA---EGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhcccceeEec---------cccccccCChhHHHHHHHhhhhcccccchHHHH---hhHHHHhhhhhhhcCcCCeEEEEE
Confidence 66666666665 5566776665 4667777888887774433222 223456778888888888776
Q ss_pred -CcccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 596 -ELPECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 596 -~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
+-...+..+++|+.|.|.+|++..+|. .+..++.|+.|+|.++.
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 233456668888888888888887775 56778888888888764
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-24 Score=220.04 Aligned_cols=298 Identities=24% Similarity=0.267 Sum_probs=207.2
Q ss_pred CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
..+|+.|+.+.|.++.+|..+ .+..|..|+..+|++..+|.++..+.+|..+++.+|+.....|+.-.+..|++|+...
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 567788888888888888777 6778888888888888888888888888888888888766666655588888888776
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc----cccCcceeeccccCccccCc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE----LSCNIEELSLDGTAIQEFPS 493 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~i~~lp~ 493 (909)
| .++.+|+.++.+.+|..|++.. +++..+|...++..|..|.+.. +.++.+|. .+..+..|++..|.++++|.
T Consensus 193 N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 193 N-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred h-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCch
Confidence 3 5778899999999999999988 4577788655677777777665 33444443 23456778888888888888
Q ss_pred ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc-----------------------------------------
Q 039311 494 SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE----------------------------------------- 532 (909)
Q Consensus 494 ~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~----------------------------------------- 532 (909)
.+..+++|++|++++| .+..+|.++|++ .|+.|-+-+
T Consensus 270 e~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 8888888888888876 456677778887 777776610
Q ss_pred ---------------cccccc--------------------------ccCcceeecCccccccCCCCeeecCcccccccc
Q 039311 533 ---------------ALKELK--------------------------AEGIAIREVPSSIACLKNLGRLSFESFMCHEQM 571 (909)
Q Consensus 533 ---------------~l~~L~--------------------------l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 571 (909)
+.+.|+ ++.|.+.++|..+..++.+.+.-+.. ++..
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls---nn~i 424 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS---NNKI 424 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh---cCcc
Confidence 122222 33333333333333333332221111 2344
Q ss_pred ccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 572 GLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 572 ~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
++....++.+++|..|+|++|-+.++|..++.+-.|+.|+++.|+|..+|..+..+..|+.+-.++ ..+.+++
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd 497 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVD 497 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccC
Confidence 445555677899999999999999999999999999999999998888886554444343333332 3455554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-24 Score=224.73 Aligned_cols=321 Identities=24% Similarity=0.354 Sum_probs=223.0
Q ss_pred ccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCcccccccccc
Q 039311 306 GSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQR 383 (909)
Q Consensus 306 ~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~ 383 (909)
....++..|.+|.+.+|..... +..+. +..+..|+.+.|.+..+|..+ .+..|+.|+.++|.+.++|++++.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~l------p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~ 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQL------PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGR 135 (565)
T ss_pred HhhhcccceeEEEeccchhhhC------CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHH
Confidence 3445666667777776553322 22222 455666777777777777666 666777777777777777777777
Q ss_pred CCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEc
Q 039311 384 LVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLIL 462 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 462 (909)
+..|..++..+|++.+.++++..+..|..|++.+|.. ..+|+..-.++.|++||... +.++.+|..+ ++.+|+.|++
T Consensus 136 ~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYL 213 (565)
T ss_pred HhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHh
Confidence 7777777777777666666677777777777777543 34444444477777777766 4577777776 4778888887
Q ss_pred cCCCCCcccCcccc--CcceeeccccCccccCcccc-cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccc
Q 039311 463 SGCSNLMSFPELSC--NIEELSLDGTAIQEFPSSIE-RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKA 539 (909)
Q Consensus 463 s~c~~l~~lp~~~~--~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l 539 (909)
.. +++..+|++.+ .|++|+++.|.|+.+|...+ ++.+|..|+|++| .+++.|.++.-+.+|+.|++
T Consensus 214 ~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDl--------- 282 (565)
T KOG0472|consen 214 RR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDL--------- 282 (565)
T ss_pred hh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcc---------
Confidence 77 45566776544 47788888888888887765 7888888888887 56778888888887777776
Q ss_pred cCcceeecCccccccCCCCeeecCccccccccc--------------------------------------cccCccCCC
Q 039311 540 EGIAIREVPSSIACLKNLGRLSFESFMCHEQMG--------------------------------------LLLPISFGL 581 (909)
Q Consensus 540 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~--------------------------------------~~~~~~~~l 581 (909)
++|.+..+|.+++++ .|+.|-+.||+...+-. +..+....+
T Consensus 283 SNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 283 SNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred cCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 677889999999999 89999888865331100 000111112
Q ss_pred CCC--------------------------CEEecCCCCCCCcc------------------------cccCCCCCCcEEE
Q 039311 582 TSL--------------------------TYLRLTDCGIIELP------------------------ECLGQLSSRSILL 611 (909)
Q Consensus 582 ~~L--------------------------~~L~Ls~~~l~~lp------------------------~~l~~l~~L~~L~ 611 (909)
.+. +..+++.|++.++| ..+..+++|..|+
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence 233 34444444444333 2445789999999
Q ss_pred CCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC
Q 039311 612 LEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647 (909)
Q Consensus 612 L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 647 (909)
|++|-+..+|..++.+..|+.|+|+++ +.+.+|+.
T Consensus 442 L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~ 476 (565)
T KOG0472|consen 442 LSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPEC 476 (565)
T ss_pred cccchhhhcchhhhhhhhhheeccccc-ccccchHH
Confidence 999999999999999999999999997 67778764
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.3e-22 Score=212.39 Aligned_cols=352 Identities=20% Similarity=0.154 Sum_probs=267.7
Q ss_pred EEeecCCceEEeeCcccccCC--CCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCC-CCCeeEE
Q 039311 291 ISLDMSKVKEIHLNAGSFTNM--HKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIP-PENLVSL 367 (909)
Q Consensus 291 i~l~~~~~~~~~~~~~~f~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~-~~~L~~L 367 (909)
-.+|.++.+--.++..++.+. ..-+.|++++|.+... ....-..+++|+.+.+..|.++.+|.... ..+|+.|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i----d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI----DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKL 130 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccC----cHHHHhcCCcceeeeeccchhhhcccccccccceeEE
Confidence 345555443333333333333 2345699998876432 22222237899999999999999999884 4689999
Q ss_pred EcCCCCccccc-cccccCCCCCEEecCCCcCCCcC-CCCCccccccccccccccccceecccccCCCcccEeccccccCc
Q 039311 368 EMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKI-PDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSL 445 (909)
Q Consensus 368 ~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~-p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l 445 (909)
+|.+|.|.++. ++++-++-|++||||.|.+.... |.+..-.++++|+|++|.+..---..+..+.+|.+|.|+.|+ +
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-i 209 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-I 209 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-c
Confidence 99999999886 56888999999999998754432 248888999999999998776666788899999999999955 7
Q ss_pred cccCccc--cCCcCcEEEccCCCCCc---ccCccccCcceeeccccCccccCcc-cccCCCCCEEeccCCCCCCcCcccc
Q 039311 446 TSLSTSI--HLGSLKKLILSGCSNLM---SFPELSCNIEELSLDGTAIQEFPSS-IERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 446 ~~lp~~~--~l~~L~~L~Ls~c~~l~---~lp~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+.+|... ++++|+.|+|..|..-. .--..++.|+.|.+..|.|..+... |-.+.++++|+|..|.....-..++
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 7777655 49999999998864211 1124567889999999999988765 6779999999999987666666678
Q ss_pred cCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcc
Q 039311 520 CKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP 598 (909)
Q Consensus 520 ~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 598 (909)
.+|++|+.|++ +.|.|..+ ++++..+++|+.|+|+.|..+ .....++..+..|++|.|++|.+..+.
T Consensus 290 fgLt~L~~L~l---------S~NaI~rih~d~WsftqkL~~LdLs~N~i~---~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 290 FGLTSLEQLDL---------SYNAIQRIHIDSWSFTQKLKELDLSSNRIT---RLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred cccchhhhhcc---------chhhhheeecchhhhcccceeEeccccccc---cCChhHHHHHHHhhhhcccccchHHHH
Confidence 88998888887 56677765 456788899999999985443 334445667899999999999998654
Q ss_pred -cccCCCCCCcEEECCCCCCe-ecc---hhhccCCCCCEEeecCCCCCcccCC----CCCCcCceecccCc
Q 039311 599 -ECLGQLSSRSILLLEKNNFE-RIP---ESIIQLSHLFSLGISHCERLHSLPE----LPCDLSDIEAHCCS 660 (909)
Q Consensus 599 -~~l~~l~~L~~L~L~~n~l~-~lp---~~i~~l~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C~ 660 (909)
..+.++++|+.|+|++|.+. .+- ..+..+++|+.|.+-++ ++++||. -+.+|+.|++.+.+
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 46788999999999999987 333 24567999999999994 7999985 45578888886653
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-21 Score=221.33 Aligned_cols=341 Identities=20% Similarity=0.226 Sum_probs=211.6
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCC
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
..+.-+|+.|++++|+....+. .+. ..+|+.|.++.|-+.+.|... .+++|++|.|.+|.+..+|.++..++
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~------~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPI------QITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred hhheeeeEEeeccccccccCCc------hhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 3344458888988887544332 233 678888899988888888766 77889999999999999998898999
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccc-------------------cccceecccccCCCcccEeccccccCc-
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGC-------------------TCLLETHSSIQYLNKLVVLNLKHCRSL- 445 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c-------------------~~l~~~p~~i~~L~~L~~L~L~~c~~l- 445 (909)
+|++|++++|.+...++-+..+..++.+..++| .....++..+..+++ .|+|++|...
T Consensus 115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV 192 (1081)
T ss_pred cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh
Confidence 999999998876554444555555555555544 333444445555554 4666654322
Q ss_pred ---------cccCcc--------ccCCcCcEEEccCCCCCcccCc-cccCcceeeccccCccccCcccccCCCCCEEecc
Q 039311 446 ---------TSLSTS--------IHLGSLKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLG 507 (909)
Q Consensus 446 ---------~~lp~~--------~~l~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 507 (909)
+.+--. +..++|+.|..+.|......+. ...+|++++++.+.+..+|+|++.+.+|+.|...
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 221110 1345677777777776655443 3457999999999999999999999999999998
Q ss_pred CCCCCCcCcccccCCCCCCeeec--------------ccccccccccCcceeecCccc----------------------
Q 039311 508 NCLRLEGLPSKICKLKSLERLNL--------------AEALKELKAEGIAIREVPSSI---------------------- 551 (909)
Q Consensus 508 ~c~~l~~lp~~l~~L~~L~~L~l--------------~~~l~~L~l~~~~~~~lp~~i---------------------- 551 (909)
+|.. ..+|..+..+.+|+.|.+ ..+++.|++..|.+..+|..+
T Consensus 273 ~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 273 HNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred chhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 8754 555555555555554444 112333333333333333311
Q ss_pred ----cccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCCCeecchhh--
Q 039311 552 ----ACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESI-- 624 (909)
Q Consensus 552 ----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i-- 624 (909)
..++.|+.|.+.+ +.+.+...|.+.++.+|+.|+|++|.+.++|.. +.+++.|+.|+|+||+++.+|..+
T Consensus 352 ~~~e~~~~~Lq~Lylan---N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~ 428 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLAN---NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVAN 428 (1081)
T ss_pred cccchhhHHHHHHHHhc---CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHh
Confidence 1112233333333 223334455566667777777777777766643 456666666677766666665544
Q ss_pred --------------------ccCCCCCEEeecCCCCCc--ccCC-CC-CCcCceecccCcc
Q 039311 625 --------------------IQLSHLFSLGISHCERLH--SLPE-LP-CDLSDIEAHCCSS 661 (909)
Q Consensus 625 --------------------~~l~~L~~L~L~~c~~L~--~lp~-l~-~sL~~L~i~~C~~ 661 (909)
.+++.|+.+|++.| .|+ .+|+ .| ++|++|++.+.+.
T Consensus 429 ~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 45566666666643 343 2333 45 6777777777664
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=194.77 Aligned_cols=257 Identities=22% Similarity=0.245 Sum_probs=180.2
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL 421 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l 421 (909)
-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++|.+. .+|.+ .++|+.|++++|. +
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-L 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-h
Confidence 4467777778888887664 3788888888888888753 567888888887544 45543 4678888888765 3
Q ss_pred ceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSL 501 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L 501 (909)
..+|.. ..+|+.|++++| .++.+|. .+++|+.|++++| .+..+|..+.+|+.|++++|.+..+|.. ..+|
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~L 344 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSGL 344 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---cccc
Confidence 445542 256778888885 4667765 3577888888886 4556777777788888888888888752 2578
Q ss_pred CEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCC
Q 039311 502 ILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGL 581 (909)
Q Consensus 502 ~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 581 (909)
+.|+|++|. +..+|... ++|+.|+ +++|.+..+|.. ..+|+.|++++|.... +|. ..
T Consensus 345 q~LdLS~N~-Ls~LP~lp---~~L~~L~---------Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-----LP~--l~ 401 (788)
T PRK15387 345 QELSVSDNQ-LASLPTLP---SELYKLW---------AYNNRLTSLPAL---PSGLKELIVSGNRLTS-----LPV--LP 401 (788)
T ss_pred ceEecCCCc-cCCCCCCC---cccceeh---------hhccccccCccc---ccccceEEecCCcccC-----CCC--cc
Confidence 888888874 34555422 2344443 455666667653 3568888888743221 222 13
Q ss_pred CCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCc
Q 039311 582 TSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 642 (909)
++|+.|++++|.+..+|.. ..+|+.|++++|+++.+|..+..+++|+.|+|++|+.-.
T Consensus 402 s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 402 SELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 6789999999998888764 346788999999999999989999999999999986443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-19 Score=204.93 Aligned_cols=339 Identities=23% Similarity=0.227 Sum_probs=178.2
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC-CCCCee
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-PPENLV 365 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~ 365 (909)
.+.-.++|+++.....+ +.....+.+|+.|.+..|.+...+. ....+.+|++|.+.+|.+..+|..+ .+++|+
T Consensus 44 ~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~~vp~-----s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIRSVPS-----SCSNMRNLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred eeeeEEeeccccccccC-CchhhhHHHHhhcccchhhHhhCch-----hhhhhhcchhheeccchhhcCchhHHhhhccc
Confidence 34445666666533332 3455677788888888776543321 1122778888888888888888887 778888
Q ss_pred EEEcCCCCccccccccccCCCCCEEecCCC-------------------cCCCcCCC-CCcccccccccccccccc----
Q 039311 366 SLEMPHSSIKQLWKGVQRLVNLKHINLSHS-------------------EHLTKIPD-LSLATNLESLNFQGCTCL---- 421 (909)
Q Consensus 366 ~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~-------------------~~l~~~p~-l~~l~~L~~L~L~~c~~l---- 421 (909)
+|+++.|.+..+|..+..+..+..+..++| ...+.++. +..+.+ .|+|++|...
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh
Confidence 888888888777654444433333333333 22222221 222222 2444444322
Q ss_pred ------ceec-------ccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCcc---ccCcceeeccc
Q 039311 422 ------LETH-------SSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPEL---SCNIEELSLDG 485 (909)
Q Consensus 422 ------~~~p-------~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~ 485 (909)
..+. .-.-..++|+.|+...|... .+-....-.+|++++++. ..+..+|++ ..+++.+....
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcce-eeccccccccceeeecch-hhhhcchHHHHhcccceEecccc
Confidence 0000 00012234444444444322 111112245566666665 233444433 23455555555
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec-----------------------------------
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL----------------------------------- 530 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l----------------------------------- 530 (909)
|.+..+|..+...++|++|.+..| .++.+|...+.+++|++|++
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 555555555555555555555444 23344444444445554444
Q ss_pred -----------------------------ccccccccccCcceeecCcc-ccccCCCCeeecCccccccccccccCccCC
Q 039311 531 -----------------------------AEALKELKAEGIAIREVPSS-IACLKNLGRLSFESFMCHEQMGLLLPISFG 580 (909)
Q Consensus 531 -----------------------------~~~l~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 580 (909)
..+|+.|++++|.+..+|.+ +.++..|+.|+++||....+ +..+..
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L----p~tva~ 428 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL----PDTVAN 428 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh----hHHHHh
Confidence 12344444444444444432 34444444444444222211 122333
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCCCCc
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~ 642 (909)
+..|+.|...+|.+..+| .+..++.|+.+|++.|+++ .+|..... ++|++|++++|..+.
T Consensus 429 ~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 444555555555555556 6678899999999999988 45543332 899999999998654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-16 Score=182.79 Aligned_cols=242 Identities=25% Similarity=0.272 Sum_probs=152.3
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
+|+.|.+.+|.++.+|.. +.+|++|++++|+++.+|.. .++|+.|++++|.+ ..+|.+ ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l--p~~L~~L~Ls~N~- 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL--PSGLCKLWIFGNQ- 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc--hhhcCEEECcCCc-
Confidence 566666666666666643 35666666666666666642 34666666666653 334431 2456666666654
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
+..+|.. +++|+.|++++| .++.+|.. ..+|+.|.+++|. +..+|..+.+|+.|+|++|.++.+|.. ..+
T Consensus 294 Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N~-L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~ 363 (788)
T PRK15387 294 LTSLPVL---PPGLQELSVSDN-QLASLPAL--PSELCKLWAYNNQ-LTSLPTLPSGLQELSVSDNQLASLPTL---PSE 363 (788)
T ss_pred ccccccc---ccccceeECCCC-ccccCCCC--cccccccccccCc-cccccccccccceEecCCCccCCCCCC---Ccc
Confidence 3344432 356777777764 45555542 2456667776643 445666666777777777777777753 345
Q ss_pred CCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCC
Q 039311 501 LILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG 580 (909)
Q Consensus 501 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 580 (909)
|+.|++++|. +..+|.. ..+|+.|++ ++|.+..+|.. .++|+.|++++|.... +|.+
T Consensus 364 L~~L~Ls~N~-L~~LP~l---~~~L~~LdL---------s~N~Lt~LP~l---~s~L~~LdLS~N~Lss-----IP~l-- 420 (788)
T PRK15387 364 LYKLWAYNNR-LTSLPAL---PSGLKELIV---------SGNRLTSLPVL---PSELKELMVSGNRLTS-----LPML-- 420 (788)
T ss_pred cceehhhccc-cccCccc---ccccceEEe---------cCCcccCCCCc---ccCCCEEEccCCcCCC-----CCcc--
Confidence 6667777764 3345542 123444443 55666666653 2578888888743321 2221
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe-ecchhh
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE-RIPESI 624 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i 624 (909)
+.+|+.|++++|++..+|..++.+++|+.|+|++|+++ ..|..+
T Consensus 421 ~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 35788999999999999999999999999999999998 444444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-16 Score=184.68 Aligned_cols=243 Identities=21% Similarity=0.314 Sum_probs=134.2
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
+...|+++++.++.+|..++ .+|+.|++++|+++.+|..+. .+|++|++++|.+ +.+|. +-..+|+.|++++|..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~-~l~~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPA-TLPDTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCCh-hhhccccEEECcCCcc
Confidence 34567777777777776553 467777777777777776553 4777777777754 34453 1124577777777653
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCcc-ccCcceeeccccCccccCcccccCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPEL-SCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~-~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
..+|..+. .+|+.|++++| .++.+|..+ .++|+.|++++|. +..+|.. ..+|+.|++++|.+..+|..+. +
T Consensus 254 -~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~ 325 (754)
T PRK15370 254 -TELPERLP--SALQSLDLFHN-KISCLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLP--P 325 (754)
T ss_pred -CcCChhHh--CCCCEEECcCC-ccCcccccc-CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCcccc--c
Confidence 35555543 46777777653 455666533 2466666666653 3344432 2345566666666665554432 4
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccC
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF 579 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 579 (909)
+|+.|++++|. +..+|..+ . ++|+.|++++|.... +|. .
T Consensus 326 sL~~L~Ls~N~-Lt~LP~~l--------------------------------~--~sL~~L~Ls~N~L~~-----LP~-~ 364 (754)
T PRK15370 326 GLKTLEAGENA-LTSLPASL--------------------------------P--PELQVLDVSKNQITV-----LPE-T 364 (754)
T ss_pred cceeccccCCc-cccCChhh--------------------------------c--CcccEEECCCCCCCc-----CCh-h
Confidence 55555555553 22244322 1 344444444422111 111 0
Q ss_pred CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhc----cCCCCCEEeecCCC
Q 039311 580 GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESII----QLSHLFSLGISHCE 639 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~----~l~~L~~L~L~~c~ 639 (909)
-.++|+.|+|++|.+..+|..+. .+|+.|++++|++..+|..+. .++.+..|+|.+|+
T Consensus 365 lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 365 LPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hcCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 12456666666666666665543 256666666666666555432 33566666666654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-15 Score=178.46 Aligned_cols=175 Identities=18% Similarity=0.311 Sum_probs=118.9
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 417 (909)
+..|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+. .+|. +. .+|+.|++++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 3567788888888888877654 478888888888888876553 46888888887754 4553 32 4688888876
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc-cccCcceeeccccCccccCcccc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSSIE 496 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~i~ 496 (909)
|. +..+|..+. ++|++|++++| .++.+|..+ .++|+.|++++|.. ..+|. ...+|+.|++++|.++.+|..+.
T Consensus 272 N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~ 345 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNSL-TALPETLPPGLKTLEAGENALTSLPASLP 345 (754)
T ss_pred Cc-cCccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCcc-ccCCccccccceeccccCCccccCChhhc
Confidence 54 445666554 47888888885 466666543 24678888887544 34554 44578888888888888887664
Q ss_pred cCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 497 RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 497 ~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
++|+.|++++|. +..+|..+. ++|+.|++
T Consensus 346 --~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdL 374 (754)
T PRK15370 346 --PELQVLDVSKNQ-ITVLPETLP--PTITTLDV 374 (754)
T ss_pred --CcccEEECCCCC-CCcCChhhc--CCcCEEEC
Confidence 688888888874 345665432 34444444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-15 Score=180.43 Aligned_cols=410 Identities=19% Similarity=0.169 Sum_probs=231.0
Q ss_pred hhhheeeeeccCCCCHHHHHHHHHhcCCCcccchhHhhhccccEEeCCeEEehHHHHHHHHHHhhhcccCCC---CCeee
Q 039311 192 QNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDP---GKRSR 268 (909)
Q Consensus 192 k~cfl~~a~f~~~~~~~~li~~w~~~g~~~~~~i~~L~~~~li~~~~~~~~mhdll~e~~~~i~~~~~~~~~---~~~~r 268 (909)
+...-.|++|+.-+|+|+.|. .+..+.-|++.|||+...+.-.+-|.-.++..+.++..-.... ++...
T Consensus 409 ~~~lK~CFLycalFPED~~I~--------~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~ 480 (889)
T KOG4658|consen 409 PEELKSCFLYCALFPEDYEIK--------KEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKET 480 (889)
T ss_pred hHHHHHHHHhhccCCcccccc--------hHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeE
Confidence 334556777777778887776 6778999999999999766666777777777777766544333 45566
Q ss_pred eccchhHHHHhhcCCC--Cccee-EEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEE
Q 039311 269 LWHHEDIYNVLTNNTG--TEAIE-GISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYL 345 (909)
Q Consensus 269 l~~~~~i~~~l~~~~~--~~~v~-~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L 345 (909)
...||-+.++...... ...-+ .+.-+... ....+........|..
T Consensus 481 ~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~--------------------------------~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 481 VKMHDVVREMALWIASDFGKQEENQIVSDGVG--------------------------------LSEIPQVKSWNSVRRM 528 (889)
T ss_pred EEeeHHHHHHHHHHhccccccccceEEECCcC--------------------------------ccccccccchhheeEE
Confidence 6777766665433222 00001 11110000 0011111124566777
Q ss_pred EeeCCCCCccCCCCCCCCeeEEEcCCCC--ccccccc-cccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccccc
Q 039311 346 QWHGCPLKSLSSKIPPENLVSLEMPHSS--IKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCL 421 (909)
Q Consensus 346 ~l~~~~l~~lp~~~~~~~L~~L~L~~~~--i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l 421 (909)
.+.++.+..++......+|++|-+..|. +..++.+ +..++.|++|||++|..+..+|+ ++.+.+||+|+++++ .+
T Consensus 529 s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I 607 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GI 607 (889)
T ss_pred EEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-Cc
Confidence 7777777777777766678888887775 5666544 66788999999998888888887 888999999999884 46
Q ss_pred ceecccccCCCcccEeccccccCccccCcccc-CCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIH-LGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
..+|.++++|++|.+||+..+..+..+|.... +.+|++|.+..-.... ... .-..+..+.+
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~--------------~~~----~l~el~~Le~ 669 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN--------------DKL----LLKELENLEH 669 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc--------------chh----hHHhhhcccc
Confidence 68899999999999999998887777766665 8999999886632000 000 0011233344
Q ss_pred CCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccc--ccccCc-
Q 039311 501 LILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM--GLLLPI- 577 (909)
Q Consensus 501 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~--~~~~~~- 577 (909)
|+.|....+.. .+-..+..++.|.++.. .+.+.++.....+.++..+.+|+.|.+.+ |.... ......
T Consensus 670 L~~ls~~~~s~--~~~e~l~~~~~L~~~~~-----~l~~~~~~~~~~~~~~~~l~~L~~L~i~~--~~~~e~~~~~~~~~ 740 (889)
T KOG4658|consen 670 LENLSITISSV--LLLEDLLGMTRLRSLLQ-----SLSIEGCSKRTLISSLGSLGNLEELSILD--CGISEIVIEWEESL 740 (889)
T ss_pred hhhheeecchh--HhHhhhhhhHHHHHHhH-----hhhhcccccceeecccccccCcceEEEEc--CCCchhhccccccc
Confidence 44444332211 01111112222221111 11111223333444455556666666555 33211 000000
Q ss_pred -cC-CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCee-cchhhc----------cCCCCC----EEeecCCCC
Q 039311 578 -SF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFER-IPESII----------QLSHLF----SLGISHCER 640 (909)
Q Consensus 578 -~~-~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~i~----------~l~~L~----~L~L~~c~~ 640 (909)
.. .++++..+.+.+|.....+.+....++|+.|.+..+.... +..... .+.++. ..++.+.+.
T Consensus 741 ~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 741 IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred chhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence 00 1334444445555544444455555666666666554331 111111 122222 223334444
Q ss_pred CcccCCCCCCcCceecccCcccccccCcc
Q 039311 641 LHSLPELPCDLSDIEAHCCSSLEALSGLS 669 (909)
Q Consensus 641 L~~lp~l~~sL~~L~i~~C~~L~~l~~~~ 669 (909)
+..+|-..+.++.+.+..||+|..+|...
T Consensus 821 i~~~~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 821 LYWLPLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred eEecccCccchhheehhcCcccccCcccc
Confidence 44445444558888899999998888754
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-15 Score=136.31 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=84.8
Q ss_pred CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
+..++.|.+++|.+..+|+.+ .+.+|+.|++.+|+|+++|..+..+++|+.|+++-|+.....-.|+.+|.|+.|++.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 455667777777777777776 7777777777777777777777777777777777776444444577777777777777
Q ss_pred cccc-ceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccC
Q 039311 418 CTCL-LETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSG 464 (909)
Q Consensus 418 c~~l-~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~ 464 (909)
|+.. ..+|..+..++.|+.|+++++ ..+.+|..+ ++++||.|.+.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc
Confidence 6543 335666666677777777663 355555555 366666666555
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-15 Score=136.41 Aligned_cols=166 Identities=30% Similarity=0.400 Sum_probs=117.8
Q ss_pred cceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCC
Q 039311 478 IEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNL 557 (909)
Q Consensus 478 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L 557 (909)
++.|.+++|.++.+|+.|..+.+|+.|++.+| .++.+|..++.++.|+.|++. -+.+..+|.+++.++.|
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg---------mnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG---------MNRLNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc---------hhhhhcCccccCCCchh
Confidence 34445555666666666666666666666665 455666666666666666652 23445566777777777
Q ss_pred CeeecCccccccccccccCc-cCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeec
Q 039311 558 GRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGIS 636 (909)
Q Consensus 558 ~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 636 (909)
+.|++.. +++....+|. +..+..|+-|.|++|.+.-+|..++.+++|+.|.+..|.+.++|..++.+.+|++|++.
T Consensus 105 evldlty---nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTY---NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccc---cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 7777765 3444444554 66788899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCcCceecccCc
Q 039311 637 HCERLHSLPELPCDLSDIEAHCCS 660 (909)
Q Consensus 637 ~c~~L~~lp~l~~sL~~L~i~~C~ 660 (909)
++ +|+.+| |.|-.|++.+-.
T Consensus 182 gn-rl~vlp---pel~~l~l~~~k 201 (264)
T KOG0617|consen 182 GN-RLTVLP---PELANLDLVGNK 201 (264)
T ss_pred cc-eeeecC---hhhhhhhhhhhH
Confidence 85 466554 444445554433
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-13 Score=151.91 Aligned_cols=252 Identities=21% Similarity=0.174 Sum_probs=124.1
Q ss_pred CCCeeEEEcCCCCcc-----ccccccccCCCCCEEecCCCcCCCc------CC-CCCccccccccccccccccceecccc
Q 039311 361 PENLVSLEMPHSSIK-----QLWKGVQRLVNLKHINLSHSEHLTK------IP-DLSLATNLESLNFQGCTCLLETHSSI 428 (909)
Q Consensus 361 ~~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~------~p-~l~~l~~L~~L~L~~c~~l~~~p~~i 428 (909)
+.+|+.|+++++.+. .++..+...++|++|+++++..... ++ .+..+++|++|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 345777777777763 3455566666677777776654310 00 13334455555555544433333333
Q ss_pred cCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCc--------ccCccccCcceeeccccCcc-----ccCccc
Q 039311 429 QYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLM--------SFPELSCNIEELSLDGTAIQ-----EFPSSI 495 (909)
Q Consensus 429 ~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~--------~lp~~~~~L~~L~L~~~~i~-----~lp~~i 495 (909)
..+.+ . ++|+.|++++|.... .++....+|++|++++|.+. .++..+
T Consensus 102 ~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 102 ESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred HHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 32222 0 224444444443221 01111134455555555444 334445
Q ss_pred ccCCCCCEEeccCCCCCC----cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccc
Q 039311 496 ERLSSLILLNLGNCLRLE----GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM 571 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 571 (909)
..+++|+.|++++|.... .++..+..+++|+.|++..+- +.+.....++..+..+++|+.|++++|....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-- 235 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG----LTDEGASALAETLASLKSLEVLNLGDNNLTD-- 235 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc----cChHHHHHHHHHhcccCCCCEEecCCCcCch--
Confidence 556667777777765442 122333444566666553320 1111222334445556667777776632221
Q ss_pred ccccCccC-----CCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCee-----cchhhccC-CCCCEEee
Q 039311 572 GLLLPISF-----GLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFER-----IPESIIQL-SHLFSLGI 635 (909)
Q Consensus 572 ~~~~~~~~-----~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~L 635 (909)
..+..+. ..+.|+.|++++|.+.+ +...+..+++|+.+++++|.+.. +...+... +.|++|++
T Consensus 236 -~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 236 -AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred -HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 1111111 23677777777777652 34455556777777777777762 22233444 56777777
Q ss_pred cCCC
Q 039311 636 SHCE 639 (909)
Q Consensus 636 ~~c~ 639 (909)
.+++
T Consensus 315 ~~~~ 318 (319)
T cd00116 315 KDDS 318 (319)
T ss_pred CCCC
Confidence 6643
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-13 Score=142.49 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=93.4
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcCCC--CCcccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESL 413 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L 413 (909)
+..-..++|..|.|+.||... ++++|+.|||++|+|..+ |..++.|+.|..|-+.++..++.+|. |+++..|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 456678899999999999765 889999999999999977 57788899988888877556777775 8899999999
Q ss_pred ccccccccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccC
Q 039311 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSG 464 (909)
Q Consensus 414 ~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~ 464 (909)
.+.-|...-.....+..|++|..|.+.++ .+..++... .+.+++.+.+.-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhc
Confidence 88877665555566777777777777763 355554422 355555555543
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-12 Score=143.23 Aligned_cols=259 Identities=22% Similarity=0.191 Sum_probs=147.0
Q ss_pred CCCccEEEeeCCCCC-----ccCCCC-CCCCeeEEEcCCCCccc-------cccccccCCCCCEEecCCCcCCCcCCC-C
Q 039311 339 STELRYLQWHGCPLK-----SLSSKI-PPENLVSLEMPHSSIKQ-------LWKGVQRLVNLKHINLSHSEHLTKIPD-L 404 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~i~~-------lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l 404 (909)
...|+.|.+.++.+. .++..+ ...+|++|+++++.+.. ++..+..+++|+.|++++|.+....+. +
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 456999999999873 344444 55679999999987763 334567789999999999987654443 3
Q ss_pred Ccc---ccccccccccccccc----eecccccCC-CcccEeccccccCcc----ccCccc-cCCcCcEEEccCCCCCccc
Q 039311 405 SLA---TNLESLNFQGCTCLL----ETHSSIQYL-NKLVVLNLKHCRSLT----SLSTSI-HLGSLKKLILSGCSNLMSF 471 (909)
Q Consensus 405 ~~l---~~L~~L~L~~c~~l~----~~p~~i~~L-~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~Ls~c~~l~~l 471 (909)
..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+ .+++|++|++++|.....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~- 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA- 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH-
Confidence 333 449999999987542 233455666 888999998876331 222222 356788888877653311
Q ss_pred CccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCC----cCcccccCCCCCCeeecccccccccccCcceeec
Q 039311 472 PELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLE----GLPSKICKLKSLERLNLAEALKELKAEGIAIREV 547 (909)
Q Consensus 472 p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l 547 (909)
.+..++..+..+++|+.|++++|.... .++..+..+++|+.|+++.|- +.+..+..+
T Consensus 181 ---------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~----l~~~~~~~l 241 (319)
T cd00116 181 ---------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN----LTDAGAAAL 241 (319)
T ss_pred ---------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc----CchHHHHHH
Confidence 001122223333455555555543221 122223344445555443220 000001111
Q ss_pred Cccc-cccCCCCeeecCcccccccccccc-CccCCCCCCCEEecCCCCCCC-----cccccCCC-CCCcEEECCCCCC
Q 039311 548 PSSI-ACLKNLGRLSFESFMCHEQMGLLL-PISFGLTSLTYLRLTDCGIIE-----LPECLGQL-SSRSILLLEKNNF 617 (909)
Q Consensus 548 p~~i-~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~~l-~~L~~L~L~~n~l 617 (909)
...+ ...+.|+.|+++++.........+ ..+..+++|+.+++++|.+.+ +...+... +.|+.|++.+|.+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1111 123577777777622110011111 123345789999999998883 34455555 7888888887753
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-12 Score=133.61 Aligned_cols=259 Identities=20% Similarity=0.216 Sum_probs=153.4
Q ss_pred EEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccc
Q 039311 345 LQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLL 422 (909)
Q Consensus 345 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 422 (909)
.+-++-.++.+|..++. .-+.+.|..|.|+.+|+ .++.+++||.||||+|.+....|+ |.++..|-.|-+.+++.+.
T Consensus 51 VdCr~~GL~eVP~~LP~-~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP-ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCCC-cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34455667888887764 46788999999999995 578899999999999988777776 8888888888888866677
Q ss_pred eecc-cccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccC
Q 039311 423 ETHS-SIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERL 498 (909)
Q Consensus 423 ~~p~-~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l 498 (909)
.+|+ .++.|..|+.|.+.-|. +..++... .+++|..| .+..|.+..++. .+..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lL---------------------slyDn~~q~i~~~tf~~l 187 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLL---------------------SLYDNKIQSICKGTFQGL 187 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchh---------------------cccchhhhhhccccccch
Confidence 7775 45677777777766543 22222221 24444444 444455565655 46666
Q ss_pred CCCCEEeccCCCCCC------------cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCee--ecCc
Q 039311 499 SSLILLNLGNCLRLE------------GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRL--SFES 564 (909)
Q Consensus 499 ~~L~~L~L~~c~~l~------------~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L--~l~~ 564 (909)
..++.+.+..|.... ..|-+++.........+ ....+.+++..-..+ .++.+ .+.+
T Consensus 188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl---------~~~Ri~q~~a~kf~c-~~esl~s~~~~ 257 (498)
T KOG4237|consen 188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL---------YYKRINQEDARKFLC-SLESLPSRLSS 257 (498)
T ss_pred hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH---------HHHHhcccchhhhhh-hHHhHHHhhcc
Confidence 667766666554211 11111222111111111 111112222110000 01111 0000
Q ss_pred cccccccccccCc--cCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 565 FMCHEQMGLLLPI--SFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 565 ~~~~~~~~~~~~~--~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
.|. .+...|. +..+++|++|+|++|.++.+ +.+|..+..+++|.|..|++..+.. .+.++..|+.|+|.+++
T Consensus 258 -~d~--~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 258 -EDF--PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred -ccC--cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 011 1111221 55678888888888888864 5677778888888888888876654 44677888888888864
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-10 Score=123.20 Aligned_cols=189 Identities=24% Similarity=0.332 Sum_probs=107.6
Q ss_pred EecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCc
Q 039311 390 INLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLM 469 (909)
Q Consensus 390 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~ 469 (909)
.||+.|++.....++..+..|+.+.|..| ....+|..++++..|.+|||+.| .+..+|..+..--|+.|.+++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lpLkvli~sN----- 152 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLPLKVLIVSN----- 152 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCcceeEEEec-----
Confidence 34444443322223444444555554443 23456667777777777777763 366666655544455555444
Q ss_pred ccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 470 SFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 470 ~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
|+++.+|..++.+..|..|+.+.| .+..+|..++.+.+|+.|.+. .|.+..+|.
T Consensus 153 ----------------Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr---------Rn~l~~lp~ 206 (722)
T KOG0532|consen 153 ----------------NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR---------RNHLEDLPE 206 (722)
T ss_pred ----------------CccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh---------hhhhhhCCH
Confidence 555566666666666666666665 334455555555555554442 122222332
Q ss_pred cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhh---cc
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI---IQ 626 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i---~~ 626 (909)
.+ . .-.|..||+++|++..+|..|.++..|++|-|.+|.+.+-|..| +.
T Consensus 207 El---------------------------~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 207 EL---------------------------C-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGK 258 (722)
T ss_pred HH---------------------------h-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccc
Confidence 11 1 12366777777777778888888888888888888888777655 23
Q ss_pred CCCCCEEeecCCC
Q 039311 627 LSHLFSLGISHCE 639 (909)
Q Consensus 627 l~~L~~L~L~~c~ 639 (909)
..-.++|++.-|.
T Consensus 259 VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 259 VHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeeecchhcc
Confidence 3445667777663
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-10 Score=122.51 Aligned_cols=200 Identities=26% Similarity=0.325 Sum_probs=153.4
Q ss_pred cCccccCccc---cCCcCcEEEccCCCCCcccCccc---cCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCc
Q 039311 443 RSLTSLSTSI---HLGSLKKLILSGCSNLMSFPELS---CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLP 516 (909)
Q Consensus 443 ~~l~~lp~~~---~l~~L~~L~Ls~c~~l~~lp~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp 516 (909)
..++.+|... .+.--...+++.| ....+|... ..|+.+.++.|.+..+|..++++..|++|+|+.| .+..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCC
Confidence 4455555443 2444445566653 334455433 3467778888999999999999999999999987 567788
Q ss_pred ccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC
Q 039311 517 SKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE 596 (909)
Q Consensus 517 ~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~ 596 (909)
..++.|+ |+.|- +++|.++.+|..++.+..|..|+.+. +++. ..++.++++.+|+.|.+..|++..
T Consensus 138 ~~lC~lp-Lkvli---------~sNNkl~~lp~~ig~~~tl~~ld~s~---nei~-slpsql~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 138 DGLCDLP-LKVLI---------VSNNKLTSLPEEIGLLPTLAHLDVSK---NEIQ-SLPSQLGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred hhhhcCc-ceeEE---------EecCccccCCcccccchhHHHhhhhh---hhhh-hchHHhhhHHHHHHHHHhhhhhhh
Confidence 8888776 44444 47788999999999999999999886 2222 234558889999999999999999
Q ss_pred cccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC------CCCCcCceecccCc
Q 039311 597 LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE------LPCDLSDIEAHCCS 660 (909)
Q Consensus 597 lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------l~~sL~~L~i~~C~ 660 (909)
+|..+..| .|..||++.|++..||.++.++..|++|-|.+|+ |++-|. ...-.++|++.-|.
T Consensus 204 lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 99999955 5889999999999999999999999999999875 776663 22235788888883
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-08 Score=114.22 Aligned_cols=154 Identities=31% Similarity=0.438 Sum_probs=102.8
Q ss_pred CcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCC
Q 039311 477 NIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKN 556 (909)
Q Consensus 477 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~ 556 (909)
+|+.|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.|++ +++.+..+|..+.....
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l---------s~N~i~~l~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL---------SGNKISDLPPEIELLSA 210 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec---------cCCccccCchhhhhhhh
Confidence 4555555566666666667777777777777763 3445544445555555544 56667777776666666
Q ss_pred CCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeec
Q 039311 557 LGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGIS 636 (909)
Q Consensus 557 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 636 (909)
|+.|.+++|. ....+..+..+.++..|.+.++.+..++..++.+++|+.|++++|.++.++. +..+.+|+.|+++
T Consensus 211 L~~l~~~~N~----~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 211 LEELDLSNNS----IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLS 285 (394)
T ss_pred hhhhhhcCCc----ceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEecc
Confidence 7777777642 1112333555677777777777777777788888888888888888888776 7788888888888
Q ss_pred CCCCCcccC
Q 039311 637 HCERLHSLP 645 (909)
Q Consensus 637 ~c~~L~~lp 645 (909)
++.....+|
T Consensus 286 ~n~~~~~~~ 294 (394)
T COG4886 286 GNSLSNALP 294 (394)
T ss_pred Cccccccch
Confidence 865544443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-10 Score=117.00 Aligned_cols=274 Identities=23% Similarity=0.248 Sum_probs=152.7
Q ss_pred CCCEEecCCCcCCCcCCC---CCcccccccccccccccccee-cccc-cCCCcccEeccccccCccccCcc--c-cCCcC
Q 039311 386 NLKHINLSHSEHLTKIPD---LSLATNLESLNFQGCTCLLET-HSSI-QYLNKLVVLNLKHCRSLTSLSTS--I-HLGSL 457 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~-p~~i-~~L~~L~~L~L~~c~~l~~lp~~--~-~l~~L 457 (909)
.|+.|.++++.-...-+- ...++|+++|.+.+|..+++. -.++ .++++|++|++..|.+++...-. . ++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666654443331 457788888888888754432 1222 46788888888888877765432 1 58888
Q ss_pred cEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc--CcccccCCCCCCeeecccccc
Q 039311 458 KKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG--LPSKICKLKSLERLNLAEALK 535 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~l~~L~~L~~L~l~~~l~ 535 (909)
++|++++|..+.. ++++ ....++..++.+.+.+|...+. +-..-+....+..+++..|..
T Consensus 219 ~~lNlSwc~qi~~---------------~gv~---~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 219 KYLNLSWCPQISG---------------NGVQ---ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHhhhccCchhhc---------------Ccch---HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 8888888876543 2222 1123344455555555533221 000001122222222211100
Q ss_pred cccccCcceeecCccccccCCCCeeecCccccccccccccCccC-CCCCCCEEecCCCCCC-C--cccccCCCCCCcEEE
Q 039311 536 ELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGII-E--LPECLGQLSSRSILL 611 (909)
Q Consensus 536 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~-~--lp~~l~~l~~L~~L~ 611 (909)
+.+.. +-..-..+..|+.|..++ |.+..+..+..++ +..+|+.|.++.|+.. + +..--.+.+.|+.++
T Consensus 281 ---lTD~~---~~~i~~~c~~lq~l~~s~--~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 281 ---LTDED---LWLIACGCHALQVLCYSS--CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred ---ccchH---HHHHhhhhhHhhhhcccC--CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 00000 000112345667777776 7766655555543 3678888888888643 2 222224677888888
Q ss_pred CCCCCCe---ecchhhccCCCCCEEeecCCCCCccc-----C---CCCCCcCceecccCcccccccCcchhccccCCCcc
Q 039311 612 LEKNNFE---RIPESIIQLSHLFSLGISHCERLHSL-----P---ELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQ 680 (909)
Q Consensus 612 L~~n~l~---~lp~~i~~l~~L~~L~L~~c~~L~~l-----p---~l~~sL~~L~i~~C~~L~~l~~~~~l~~~~~~~~~ 680 (909)
+.++... ++-.--.+++.|+.|.|++|..++.- . .....++.|++.+||.++.....
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le------------ 420 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE------------ 420 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH------------
Confidence 8887654 23334457888999999988776643 1 23446777888888877654331
Q ss_pred eeEecccCCCCHHHHHHHH
Q 039311 681 FFYFVNCFKLDKNELKEII 699 (909)
Q Consensus 681 ~l~~~~C~~L~~~~~~~~~ 699 (909)
.+..|++|+...+.++.
T Consensus 421 --~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 421 --HLSICRNLERIELIDCQ 437 (483)
T ss_pred --HHhhCcccceeeeechh
Confidence 34567777665544443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-08 Score=114.42 Aligned_cols=174 Identities=25% Similarity=0.265 Sum_probs=104.3
Q ss_pred CCccEEEeeCCCCCccCCCCCCC--CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPE--NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~--~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
..+..|++.++.+..+|...... +|+.|++++|.+..+|..++.+++|+.|++++|++....+..+.+++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 56777777777777777766443 7777777777777777677777777777777776443333344777777777777
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCc--ccCccccCcceeeccccCccccCccc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLM--SFPELSCNIEELSLDGTAIQEFPSSI 495 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~--~lp~~~~~L~~L~L~~~~i~~lp~~i 495 (909)
|. +..+|..++.+..|++|.++++..+..+....++.++..|.+.++.... .....+.+++.|++++|.+..++. +
T Consensus 196 N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~ 273 (394)
T COG4886 196 NK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-L 273 (394)
T ss_pred Cc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-c
Confidence 53 4556666666666777777765433333333345566666544433222 222233345555555555555555 5
Q ss_pred ccCCCCCEEeccCCCCCCcC
Q 039311 496 ERLSSLILLNLGNCLRLEGL 515 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~~l 515 (909)
+.+.+|+.|+++++......
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccCccCEEeccCccccccc
Confidence 55555555555555444333
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-08 Score=102.71 Aligned_cols=99 Identities=24% Similarity=0.252 Sum_probs=54.3
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c 442 (909)
.|++|||++|.|+.+.++++-+++++.|++|+|.+. .+.++..+++|+.|+|++|.. .++...=.+|-+.++|.|++|
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhhh
Confidence 677777777777777777777777777777777643 333355666666666666432 222222223444555555552
Q ss_pred cCccccCccccCCcCcEEEccC
Q 039311 443 RSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 443 ~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
.++++.....+-+|..|++++
T Consensus 363 -~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 363 -KIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred -hHhhhhhhHhhhhheeccccc
Confidence 244443333344444443333
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.6e-08 Score=94.69 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=15.5
Q ss_pred ccCCCCCCCCeeEEEcCCCCccccccccc-cCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccc-cCC
Q 039311 354 SLSSKIPPENLVSLEMPHSSIKQLWKGVQ-RLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSI-QYL 431 (909)
Q Consensus 354 ~lp~~~~~~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i-~~L 431 (909)
..|...++.++++|+|+++.|..+. .++ .+.+|+.|+|++|. ++.++.+..+++|++|++++|... .+...+ ..+
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 3333334444455555555544442 233 34455555555554 233444555555555555554322 222222 235
Q ss_pred CcccEecccc
Q 039311 432 NKLVVLNLKH 441 (909)
Q Consensus 432 ~~L~~L~L~~ 441 (909)
++|+.|++++
T Consensus 88 p~L~~L~L~~ 97 (175)
T PF14580_consen 88 PNLQELYLSN 97 (175)
T ss_dssp TT--EEE-TT
T ss_pred CcCCEEECcC
Confidence 5555555555
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-08 Score=101.79 Aligned_cols=195 Identities=21% Similarity=0.173 Sum_probs=102.4
Q ss_pred CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCC----CCcccCccccCcc
Q 039311 404 LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCS----NLMSFPELSCNIE 479 (909)
Q Consensus 404 l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~----~l~~lp~~~~~L~ 479 (909)
++-+.+|..+.++.|.- ..+-.-...-+.|+++...+ +.+...|...-...+..+.-+.-. ......+....|+
T Consensus 210 l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~-s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHN-TTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred hHHhhhhheeeeeccch-hheeceeecCchhheeeeec-ccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 45566777777777642 11111112234566666654 223333332222222221111100 0000111234678
Q ss_pred eeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCe
Q 039311 480 ELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGR 559 (909)
Q Consensus 480 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~ 559 (909)
+|+|++|.|+.+..++.-++.++.|+++.|..... ..+..|++|..|++ ++|.+.++..+-.++.|++.
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDL---------S~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDL---------SGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeec---------ccchhHhhhhhHhhhcCEee
Confidence 89999999999999888899999999998865432 12555666666655 44444555444455556666
Q ss_pred eecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecc--hhhccCCCCCEEeecC
Q 039311 560 LSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIP--ESIIQLSHLFSLGISH 637 (909)
Q Consensus 560 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~ 637 (909)
|.+++ |.+.++ ..++.+-+|..|++++|++..+. .+|+++|.|+.|.|.+
T Consensus 357 L~La~---------------------------N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 357 LKLAQ---------------------------NKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eehhh---------------------------hhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 66655 332222 13344445555555555555332 2556666666666666
Q ss_pred CC
Q 039311 638 CE 639 (909)
Q Consensus 638 c~ 639 (909)
||
T Consensus 409 NP 410 (490)
T KOG1259|consen 409 NP 410 (490)
T ss_pred CC
Confidence 54
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.6e-08 Score=94.26 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=14.9
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccccc-ccCCCCCEEecCCCc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSE 396 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~~~ 396 (909)
.+|+.|++++|.++.++..-.+.+|++|++++|.|+.+..++ ..+++|+.|++++|+
T Consensus 42 ~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 344445555554444444334444555555555444443333 234444455444443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-08 Score=106.59 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=17.0
Q ss_pred CCCCCcEEECCCCCCeecch--hhccCCCCCEEeecC
Q 039311 603 QLSSRSILLLEKNNFERIPE--SIIQLSHLFSLGISH 637 (909)
Q Consensus 603 ~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~ 637 (909)
.+++|+.|++..|++..++. .+..+++|+.|.+..
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 34555555555555543332 334444555555443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-08 Score=106.76 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=81.6
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC----CCCCeeEEEcCCCCcccccccc--
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI----PPENLVSLEMPHSSIKQLWKGV-- 381 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i~~lp~~~-- 381 (909)
+++++||...+.+........+ ...+ ++++|.|++++|-+..+-... ++++|+.|+++.|.+...+.+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchh----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 3555666666654432221111 1122 566667777666544332221 5567777777777666555332
Q ss_pred ccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccccccCccccCc---cccCCc
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLST---SIHLGS 456 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~---~~~l~~ 456 (909)
..+++|+.|.|+.|.+...--. +..+|+|+.|+|++|.....-..+...+..|+.|||++|..+ +++. ...++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccc
Confidence 2466777777777765421111 345677777777776543333344455666777777775433 3332 224666
Q ss_pred CcEEEccCC
Q 039311 457 LKKLILSGC 465 (909)
Q Consensus 457 L~~L~Ls~c 465 (909)
|+.|+++.|
T Consensus 273 L~~Lnls~t 281 (505)
T KOG3207|consen 273 LNQLNLSST 281 (505)
T ss_pred hhhhhcccc
Confidence 666666554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-09 Score=105.44 Aligned_cols=109 Identities=25% Similarity=0.345 Sum_probs=65.8
Q ss_pred CCccccccccccccccccceecccccCCCcccEeccccccCccccCccc---cCCcCcEEEccCCCCCccc-----Cccc
Q 039311 404 LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI---HLGSLKKLILSGCSNLMSF-----PELS 475 (909)
Q Consensus 404 l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~Ls~c~~l~~l-----p~~~ 475 (909)
++.|.+|+.|.++|......+...|.+-.+|+.|||++|..++...... +++.|+.|++++|...... ....
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 4455666666666666656666667777778888888877776654333 5788888888888655432 2234
Q ss_pred cCcceeeccccCc----cccCcccccCCCCCEEeccCCCCC
Q 039311 476 CNIEELSLDGTAI----QEFPSSIERLSSLILLNLGNCLRL 512 (909)
Q Consensus 476 ~~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L~~c~~l 512 (909)
++|+.|+|+|+.= ..+..-...+++|..|+|++|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 5566666666521 122222345666666666666443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.2e-08 Score=102.15 Aligned_cols=247 Identities=16% Similarity=0.135 Sum_probs=123.7
Q ss_pred cccCCCCCEEecCCCcCCCcCC-----CCCcccccccccccccc---ccceecc-------cccCCCcccEeccccccCc
Q 039311 381 VQRLVNLKHINLSHSEHLTKIP-----DLSLATNLESLNFQGCT---CLLETHS-------SIQYLNKLVVLNLKHCRSL 445 (909)
Q Consensus 381 ~~~L~~L~~L~Ls~~~~l~~~p-----~l~~l~~L~~L~L~~c~---~l~~~p~-------~i~~L~~L~~L~L~~c~~l 445 (909)
.-.+..++.|+|++|.+-+.-. .+.+.++|+..++++-- ...++|+ .+...++|++||||+|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3456677888888876654332 24555667766666521 1122232 2233446666666665322
Q ss_pred cccCcc----c-cCCcCcEEEccCCCCCcccCccc-cCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc----C
Q 039311 446 TSLSTS----I-HLGSLKKLILSGCSNLMSFPELS-CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG----L 515 (909)
Q Consensus 446 ~~lp~~----~-~l~~L~~L~Ls~c~~l~~lp~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~----l 515 (909)
..-+.. + ++.+|+.|.|.+|..-..-...+ ..|..|. ...-++.-+.|+.+....|..-.. +
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHhccCCCcceEEEEeeccccccccHHHH
Confidence 111111 1 35555555555553221100000 0000000 111233455666666665532211 1
Q ss_pred cccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCc-cCCCCCCCEEecCCCCC
Q 039311 516 PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCGI 594 (909)
Q Consensus 516 p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~l 594 (909)
...+...+.|+.+.+..+- +....++-+...+..+++|+.|+|.+|......+..+.. +..+++|++|++++|.+
T Consensus 178 A~~~~~~~~leevr~~qN~----I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNG----IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHhccccceEEEeccc----ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 1224444555555553320 011111223345667777777777775443332222322 44567888888888877
Q ss_pred CC-----ccccc-CCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCCC
Q 039311 595 IE-----LPECL-GQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 595 ~~-----lp~~l-~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.. +...+ ...|+|+.|.+.+|.++ .+-..+...|.|+.|+|++|.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 73 22222 34788888888888776 233455667888888888874
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.7e-06 Score=91.45 Aligned_cols=43 Identities=26% Similarity=0.480 Sum_probs=25.3
Q ss_pred ccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc
Q 039311 428 IQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE 473 (909)
Q Consensus 428 i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~ 473 (909)
+..+.+++.|++++| .++.+|. -..+|+.|.+++|..+..+|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCc
Confidence 334566666666666 5666662 234567777776666655553
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-06 Score=101.18 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=84.9
Q ss_pred CeeEEEcCCCCcc-ccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIK-QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
.++.|+|+++.+. .+|..+..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|.....+|..++.+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788889888887 6788888899999999999888878885 8888999999999988888888888888999999988
Q ss_pred cccCccccCcccc--CCcCcEEEccCCCCCc
Q 039311 441 HCRSLTSLSTSIH--LGSLKKLILSGCSNLM 469 (909)
Q Consensus 441 ~c~~l~~lp~~~~--l~~L~~L~Ls~c~~l~ 469 (909)
+|.....+|..+. ..++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 8776667776653 3455667776665443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-07 Score=100.75 Aligned_cols=255 Identities=20% Similarity=0.260 Sum_probs=140.3
Q ss_pred cccCCCCCEEecCCCcCCCcCC--CC-Cccccccccccccccccceec-c-cccCCCcccEeccccccCccccC--c-cc
Q 039311 381 VQRLVNLKHINLSHSEHLTKIP--DL-SLATNLESLNFQGCTCLLETH-S-SIQYLNKLVVLNLKHCRSLTSLS--T-SI 452 (909)
Q Consensus 381 ~~~L~~L~~L~Ls~~~~l~~~p--~l-~~l~~L~~L~L~~c~~l~~~p-~-~i~~L~~L~~L~L~~c~~l~~lp--~-~~ 452 (909)
..+++++..|++.+|..++... .+ ..+++|++|++..|..++... . -...+++|++|+++.|..++.-. . .-
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 4567788888888887555433 12 368889999999887665432 1 23467899999999988776511 1 11
Q ss_pred cCCcCcEEEccCCCCCcc--c---CccccCcceeeccccCc-cccC--cccccCCCCCEEeccCCCCCCcCcccccCCCC
Q 039311 453 HLGSLKKLILSGCSNLMS--F---PELSCNIEELSLDGTAI-QEFP--SSIERLSSLILLNLGNCLRLEGLPSKICKLKS 524 (909)
Q Consensus 453 ~l~~L~~L~Ls~c~~l~~--l---p~~~~~L~~L~L~~~~i-~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~ 524 (909)
+++.++.+.+.||..++. + ......+.++++..+.. +... ..-..+..|+.|..++|......+-.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~------ 313 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW------ 313 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH------
Confidence 466677777777765431 1 01111123333333311 1110 00123455555555555443322210
Q ss_pred CCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccC-CCCCCCEEecCCCCCCC---cccc
Q 039311 525 LERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIE---LPEC 600 (909)
Q Consensus 525 L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~---lp~~ 600 (909)
.-..+..+|+.|-+.+ |.++.+..+..+. +.+.|+.|++..|.... +...
T Consensus 314 ------------------------aLg~~~~~L~~l~l~~--c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 314 ------------------------ALGQHCHNLQVLELSG--CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred ------------------------HHhcCCCceEEEeccc--cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 0123345555666655 5555444444433 36677777777776552 3333
Q ss_pred cCCCCCCcEEECCCCCCe------ecchhhccCCCCCEEeecCCCCCcccC----CCCCCcCceecccCcccccccC
Q 039311 601 LGQLSSRSILLLEKNNFE------RIPESIIQLSHLFSLGISHCERLHSLP----ELPCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 601 l~~l~~L~~L~L~~n~l~------~lp~~i~~l~~L~~L~L~~c~~L~~lp----~l~~sL~~L~i~~C~~L~~l~~ 667 (909)
-.+++.|+.|.|++|... .+..+...+..|+.|.|++|+.+..-. ...++|+.+++.+|....+-+.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 356777777777776433 122333556778888888888765221 1233666677777765544433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-07 Score=96.55 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=31.6
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 618 (909)
.|+|+.|.+.+|.++. +...+...+.|+.|+|++|.+.
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6899999999998882 4456667899999999999883
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-07 Score=101.84 Aligned_cols=58 Identities=31% Similarity=0.437 Sum_probs=26.6
Q ss_pred CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccc
Q 039311 360 PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC 418 (909)
Q Consensus 360 ~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 418 (909)
.+.+|+.|++.+|.|+++...+..+++|++|++++|. ++.+..+..++.|+.|++++|
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccC
Confidence 3345555555555555444334445555555555443 233333444444444444443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.2e-06 Score=99.23 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=94.1
Q ss_pred CccEEEeeCCCCC-ccCCCC-CCCCeeEEEcCCCCcc-ccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccc
Q 039311 341 ELRYLQWHGCPLK-SLSSKI-PPENLVSLEMPHSSIK-QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQ 416 (909)
Q Consensus 341 ~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 416 (909)
.++.|+++++.+. .+|..+ .+.+|+.|+|++|.+. .+|..++.+++|+.|+|++|.+...+|+ ++.+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999885 567666 7899999999999997 7888999999999999999999988887 9999999999999
Q ss_pred cccccceecccccCC-CcccEeccccccCccccC
Q 039311 417 GCTCLLETHSSIQYL-NKLVVLNLKHCRSLTSLS 449 (909)
Q Consensus 417 ~c~~l~~~p~~i~~L-~~L~~L~L~~c~~l~~lp 449 (909)
+|.....+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999988764 577888888876555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=87.49 Aligned_cols=60 Identities=17% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCC-CCccccccccccCCCCCEEecCCCcCCCcCC
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPH-SSIKQLWKGVQRLVNLKHINLSHSEHLTKIP 402 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~-~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p 402 (909)
..+++.|++++|.++++|. -+.+|++|.+++ ++++.+|..+ ..+|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 3556667777666666662 223566666654 3444444433 2355555555554333333
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-06 Score=67.04 Aligned_cols=58 Identities=28% Similarity=0.441 Sum_probs=50.3
Q ss_pred CCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 582 TSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
|+|++|++++|++..+| ..+.++++|+.|++++|+++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57889999999988877 477889999999999999998775 67899999999999885
|
... |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.9e-07 Score=95.01 Aligned_cols=180 Identities=18% Similarity=0.203 Sum_probs=111.1
Q ss_pred cceeeccccCcc--ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccC
Q 039311 478 IEELSLDGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLK 555 (909)
Q Consensus 478 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~ 555 (909)
+++|+|+...|+ .+...+..+.+|+.|.|.++.....+-..+.+-.+|+.|+++.+ +|..-..+.-.+..++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~------sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC------SGFTENALQLLLSSCS 260 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc------cccchhHHHHHHHhhh
Confidence 556666666655 44444667777777777777666666666666677777776433 1211112223356777
Q ss_pred CCCeeecCccccccccccccCccCC-CCCCCEEecCCCCCC----CcccccCCCCCCcEEECCCCCC-e-ecchhhccCC
Q 039311 556 NLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGII----ELPECLGQLSSRSILLLEKNNF-E-RIPESIIQLS 628 (909)
Q Consensus 556 ~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~Ls~~~l~----~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~i~~l~ 628 (909)
.|..|+++. |.-........... -++|+.|+|++|.-. .+..-...+|+|..|||++|.. + ..-..+.+++
T Consensus 261 ~L~~LNlsW--c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 261 RLDELNLSW--CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hHhhcCchH--hhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 788888877 54333221111111 467888888887432 2333345688899999988753 3 3444677899
Q ss_pred CCCEEeecCCCCCc--ccC--CCCCCcCceecccCcccccc
Q 039311 629 HLFSLGISHCERLH--SLP--ELPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 629 ~L~~L~L~~c~~L~--~lp--~l~~sL~~L~i~~C~~L~~l 665 (909)
.|++|.++.|..+- .+- ...|+|.+|++.+|-+=+.+
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~m 379 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTM 379 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHH
Confidence 99999999997552 010 13558899999998654443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.7e-05 Score=63.60 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=25.0
Q ss_pred eeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 364 LVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
|++|++++|+++.+|. .+..+++|++|++++|.+....|+ |..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4444444444444442 334445555555554443333332 445555555555444
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.3e-06 Score=94.09 Aligned_cols=167 Identities=23% Similarity=0.254 Sum_probs=107.7
Q ss_pred CCCccEEEeeCCCCCccCC-CCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSS-KIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
+.+|.+|++.+|.++.+.. .-.+.+|++|++++|.|.++. ++..+..|+.|++++|. +..++.+..+++|+.+++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCc
Confidence 5678888888888888877 446788888888888888874 36677778888888886 55666777788888888888
Q ss_pred ccccceec-ccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCC--cccCcccc-CcceeeccccCccccCc
Q 039311 418 CTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNL--MSFPELSC-NIEELSLDGTAIQEFPS 493 (909)
Q Consensus 418 c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l--~~lp~~~~-~L~~L~L~~~~i~~lp~ 493 (909)
|.....-+ . +..+.+|+.+.+.++. +..+.....+..+..+++..+... ..++.... .|+.++++++.+..++.
T Consensus 172 n~i~~ie~~~-~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 172 NRIVDIENDE-LSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred chhhhhhhhh-hhhccchHHHhccCCc-hhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc
Confidence 76543222 1 5677778888887743 333333223344444444443221 11111111 26777777777777765
Q ss_pred ccccCCCCCEEeccCC
Q 039311 494 SIERLSSLILLNLGNC 509 (909)
Q Consensus 494 ~i~~l~~L~~L~L~~c 509 (909)
.+..+..+..|++.++
T Consensus 250 ~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSN 265 (414)
T ss_pred cccccccccccchhhc
Confidence 5666666666666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00034 Score=88.78 Aligned_cols=201 Identities=14% Similarity=0.193 Sum_probs=127.5
Q ss_pred CCeEEEEEeCCCCHH---HHHHHhhccCCCCCCCEEEEEeCCchhhh--hcC-CCcEEECC----CCCHHHHHHHHHHhh
Q 039311 49 RKKVLIVFDDVSTSE---QMEFLIGNQGWLMQGSRLIITARDKQVLK--NCG-VDTIYEVK----ELFDDDARMLFSRYA 118 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~---~~~~l~~~~~~~~~gSrIivTTR~~~v~~--~~~-~~~~y~l~----~L~~~es~~LF~~~a 118 (909)
..+++|||||+...+ ..+.+..-......+-++|||||...-.. ... .+...++. +++.+|+.+||....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 678999999997642 12233333333456778999999842111 111 13355666 899999999997654
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHhcCCCcchhhhhhhc-ccCCChhhhhhhee
Q 039311 119 FGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVS-FDGLDDEEQNLFLD 197 (909)
Q Consensus 119 f~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~~~i~~~L~~s-y~~L~~~~k~cfl~ 197 (909)
... - + .+...++.+.|+|.|+++..++..+.+.... -......+...+...+.+.+.-. ++.||+..+..++.
T Consensus 200 ~~~-~-~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~ 273 (903)
T PRK04841 200 SSP-I-E---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLR 273 (903)
T ss_pred CCC-C-C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 321 1 1 2456789999999999999999887643210 01112222222233455544333 78999999999999
Q ss_pred eeeccCCCCHHHHHHHHHhcCCCcccchhHhhhccccEE-eC---CeEEehHHHHHHHHHHhhhc
Q 039311 198 IASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVI-LN---NKIMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 198 ~a~f~~~~~~~~li~~w~~~g~~~~~~i~~L~~~~li~~-~~---~~~~mhdll~e~~~~i~~~~ 258 (909)
.|++. ..+.+....+. +.. .+...++.+.+.+++.. .+ ..+.+|++++++.+.-...+
T Consensus 274 ~a~~~-~~~~~l~~~l~-~~~-~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 274 CSVLR-SMNDALIVRVT-GEE-NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred hcccc-cCCHHHHHHHc-CCC-cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99986 34443333222 111 24567899999998653 22 25889999999988776433
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.9e-05 Score=54.67 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecc
Q 039311 583 SLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIP 621 (909)
Q Consensus 583 ~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 621 (909)
+|++|++++|++.++|..++++++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666666666666666666666666554
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=1e-06 Score=99.55 Aligned_cols=95 Identities=26% Similarity=0.333 Sum_probs=42.9
Q ss_pred ccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCC--ccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLS--LATNLESLNFQGC 418 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~--~l~~L~~L~L~~c 418 (909)
|...+.+.|.+..+.... -+..|+.|+|++|++.+.- .+..|++|++|||++|. +..+|.++ .| +|+.|++++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc
Confidence 333344444444443333 2245555555555555443 44555555555555554 33444322 22 2555555554
Q ss_pred cccceecccccCCCcccEecccc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
.. .++ ..|.+|++|+.||+++
T Consensus 243 ~l-~tL-~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 243 AL-TTL-RGIENLKSLYGLDLSY 263 (1096)
T ss_pred HH-Hhh-hhHHhhhhhhccchhH
Confidence 32 111 2445555555555554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=1.5e-05 Score=90.37 Aligned_cols=97 Identities=33% Similarity=0.419 Sum_probs=60.2
Q ss_pred ccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc---cccCcceeecccc
Q 039311 410 LESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGT 486 (909)
Q Consensus 410 L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~ 486 (909)
|.+.+.++ +.+..+..++.-++.|+.|||++|+ +........++.|++|||+.| .+..+|. ..+.|..|.+++|
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccc-hhccccccchhhhhheeeeeccc
Confidence 44444444 3345555666666667777776643 444443334666777777663 2333333 3345777888888
Q ss_pred CccccCcccccCCCCCEEeccCCC
Q 039311 487 AIQEFPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 487 ~i~~lp~~i~~l~~L~~L~L~~c~ 510 (909)
.++++ ..+.+|.+|+.|++++|-
T Consensus 243 ~l~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 243 ALTTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHHhh-hhHHhhhhhhccchhHhh
Confidence 88877 467888899999998873
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00024 Score=52.40 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC
Q 039311 605 SSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE 646 (909)
Q Consensus 605 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 646 (909)
++|++|++++|+++.+|..+.+|++|+.|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 5799999999999999988999999999999998 4666654
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00012 Score=74.97 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=109.6
Q ss_pred cccccccccccccccc--ceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeec
Q 039311 406 LATNLESLNFQGCTCL--LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSL 483 (909)
Q Consensus 406 ~l~~L~~L~L~~c~~l--~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L 483 (909)
.++.++.|+|.+|... .++..-+.+|+.|++|+|+.|.--.. ++.+|-...+|+.|-|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--------------------I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--------------------IKSLPLPLKNLRVLVL 128 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--------------------cccCcccccceEEEEE
Confidence 5677788888876543 23334455677777777776432111 2223322334455555
Q ss_pred cccCcc--ccCcccccCCCCCEEeccCCCCCCcC--cccccCC-CCCCeeecccccccccccCcceeecCccccccCCCC
Q 039311 484 DGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGL--PSKICKL-KSLERLNLAEALKELKAEGIAIREVPSSIACLKNLG 558 (909)
Q Consensus 484 ~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~l--p~~l~~L-~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~ 558 (909)
.|+.+. ...+.+..++.++.|.++.|....-. -..+... +.+++|++..|+..++.+-+.+.
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~------------- 195 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS------------- 195 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-------------
Confidence 555443 44455666777777777766221100 0011111 12333333333222222111111
Q ss_pred eeecCccccccccccccCccCCCCCCCEEecCCCCCCCc--ccccCCCCCCcEEECCCCCCeecc--hhhccCCCCCEEe
Q 039311 559 RLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL--PECLGQLSSRSILLLEKNNFERIP--ESIIQLSHLFSLG 634 (909)
Q Consensus 559 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~ 634 (909)
..+|++..+-+..|.+.+. ......+|.+..|+|+.|++.++. +.+..++.|..|.
T Consensus 196 --------------------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 196 --------------------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLR 255 (418)
T ss_pred --------------------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheee
Confidence 1256666677777766642 234556777788889888888554 3677889999999
Q ss_pred ecCCCCCcccCCCCCCcCceecccCccccccc
Q 039311 635 ISHCERLHSLPELPCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 635 L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l~ 666 (909)
++++|.+..+.. .--+.|-|...++++-+.
T Consensus 256 v~~~Pl~d~l~~--~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 256 VSENPLSDPLRG--GERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccCCcccccccC--CcceEEEEeeccceEEec
Confidence 999887766643 112334444445444443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00018 Score=85.93 Aligned_cols=100 Identities=25% Similarity=0.328 Sum_probs=65.9
Q ss_pred CcccEeccccccCccc-cCccc--cCCcCcEEEccCCCC----CcccCccccCcceeeccccCccccCcccccCCCCCEE
Q 039311 432 NKLVVLNLKHCRSLTS-LSTSI--HLGSLKKLILSGCSN----LMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILL 504 (909)
Q Consensus 432 ~~L~~L~L~~c~~l~~-lp~~~--~l~~L~~L~Ls~c~~----l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 504 (909)
.+|++|+++|...+.. -|..+ .+|+|+.|.++|-.. ...+...++||..|++++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5677777766433211 11222 388888888887322 233455677889999999999988 788999999999
Q ss_pred eccCCCCCC-cCcccccCCCCCCeeeccc
Q 039311 505 NLGNCLRLE-GLPSKICKLKSLERLNLAE 532 (909)
Q Consensus 505 ~L~~c~~l~-~lp~~l~~L~~L~~L~l~~ 532 (909)
.+.+-.... ..-..+.+|++|+.||++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 887754332 1122356777888887754
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00028 Score=72.44 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=16.3
Q ss_pred CCccEEEeeCCCCCccCCCC----CCCCeeEEEcCCCCc
Q 039311 340 TELRYLQWHGCPLKSLSSKI----PPENLVSLEMPHSSI 374 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i 374 (909)
..++.|++.+|.+......+ ++++|++|++++|.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 44555555555544433322 344455555554443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00024 Score=84.89 Aligned_cols=109 Identities=23% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCCCCEEeccCCCCCC-cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccC
Q 039311 498 LSSLILLNLGNCLRLE-GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLP 576 (909)
Q Consensus 498 l~~L~~L~L~~c~~l~-~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 576 (909)
||+|++|.+.+-.... ++.....++|+|..||+ +++.++.+ .+++.+++|+.|.+.+.... ....+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI---------S~TnI~nl-~GIS~LknLq~L~mrnLe~e--~~~~l~ 214 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI---------SGTNISNL-SGISRLKNLQVLSMRNLEFE--SYQDLI 214 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeec---------CCCCccCc-HHHhccccHHHHhccCCCCC--chhhHH
Confidence 5556666555532211 11222344555555554 44444444 45666667776666652111 112333
Q ss_pred ccCCCCCCCEEecCCCCCCCcc-------cccCCCCCCcEEECCCCCCe
Q 039311 577 ISFGLTSLTYLRLTDCGIIELP-------ECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 577 ~~~~l~~L~~L~Ls~~~l~~lp-------~~l~~l~~L~~L~L~~n~l~ 618 (909)
.+..|.+|+.||+|.......+ +.-..||+|+.||.+++.+.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 4666777888887776555322 22345778888888877665
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0029 Score=61.85 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=52.3
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCC-cccccccccccccccc--ceecccccCCCcccEec
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLS-LATNLESLNFQGCTCL--LETHSSIQYLNKLVVLN 438 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~-~l~~L~~L~L~~c~~l--~~~p~~i~~L~~L~~L~ 438 (909)
.+...+||++|.+..++ .+..++.|.+|.|++|++...-|.+. .+++|..|.|.+|+.- +++ ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 35556666666665553 24556666666666666555555543 3455666666665431 111 2344555666666
Q ss_pred cccccCccccCcc-----ccCCcCcEEEccC
Q 039311 439 LKHCRSLTSLSTS-----IHLGSLKKLILSG 464 (909)
Q Consensus 439 L~~c~~l~~lp~~-----~~l~~L~~L~Ls~ 464 (909)
+-+|. ++....- ..+++|+.||..+
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 65543 2221111 1366777776655
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.00048 Score=80.48 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=18.3
Q ss_pred CCCCCEEecCCCcCCCcC---CCCCcccccccccccc
Q 039311 384 LVNLKHINLSHSEHLTKI---PDLSLATNLESLNFQG 417 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~ 417 (909)
.+.|+.|.+..+...... +....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 455666666655444431 2244556666666655
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.17 Score=53.99 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHHHhcCCCCcccCCccchHHHH----Hhh-CCCeEEEEEeCCCCHH--HHHHHhhccCC---CCCCCEE
Q 039311 12 GGLAHLRQILLSAILDDGNVSIGCPSIGLNFRS----KRL-SRKKVLIVFDDVSTSE--QMEFLIGNQGW---LMQGSRL 81 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~----~~L-~~kr~LlVLDDv~~~~--~~~~l~~~~~~---~~~gSrI 81 (909)
.+..++.+.+...+. .+ .+..+.......+. ..+ .+++++||+||++... .++.+...... .+..-.|
T Consensus 82 ~~~~~~l~~i~~~lG-~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~v 159 (269)
T TIGR03015 82 VDAEDLLRMVAADFG-LE-TEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQI 159 (269)
T ss_pred CCHHHHHHHHHHHcC-CC-CCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEE
Confidence 345567777776653 21 11111112222332 322 6788999999998743 46655432221 1122244
Q ss_pred EEEeCCchhhhhc----------CCCcEEECCCCCHHHHHHHHHHhhcCCC-CCCchh-HHHHHHHHHHhCCCchHHHHH
Q 039311 82 IITARDKQVLKNC----------GVDTIYEVKELFDDDARMLFSRYAFGKN-YPNVGY-MELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 82 ivTTR~~~v~~~~----------~~~~~y~l~~L~~~es~~LF~~~af~~~-~~~~~~-~~l~~~iv~~c~GlPLal~~l 149 (909)
++|... ...... .+...+++++++.+|..+++...+-... .....+ .+..+.|++.++|.|..+..+
T Consensus 160 vl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 160 FLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred EEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 555543 222111 1234689999999999998876653221 111112 478899999999999999988
Q ss_pred hHhhc------CC---CHHHHHHHHHHH
Q 039311 150 GRFLC------GR---RIKDWESTIKKI 168 (909)
Q Consensus 150 g~~L~------~~---~~~~W~~~l~~L 168 (909)
+..+. ++ +.+.++.++..+
T Consensus 239 ~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 239 CDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 88771 21 455555555443
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=61.73 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHhcC-CCCcccCC---ccchHHHHHhhCCCeEEEEEeCCCCH---HHHHH-HhhccCCC-CCCCEEEE
Q 039311 13 GLAHLRQILLSAILDD-GNVSIGCP---SIGLNFRSKRLSRKKVLIVFDDVSTS---EQMEF-LIGNQGWL-MQGSRLII 83 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~-~~~~~~~~---~~~~~~i~~~L~~kr~LlVLDDv~~~---~~~~~-l~~~~~~~-~~gSrIiv 83 (909)
|--+|.+.+..++... ......+. +.....+.+.+++ .-+|||||+|.. .+|+. +...+... ..|++|||
T Consensus 51 GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~ill 129 (229)
T PRK06893 51 GKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQ-QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLL 129 (229)
T ss_pred CHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEE
Confidence 3356666666665421 12111111 1122233444443 248999999863 45653 22222221 24677766
Q ss_pred EeCC----------chhhhhcCCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHH
Q 039311 84 TARD----------KQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 84 TTR~----------~~v~~~~~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal 146 (909)
||.+ +++...++...+++++++++++.++++.++|+...-.-+ .++..-+++++.|-.-++
T Consensus 130 its~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 130 ISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred EeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHH
Confidence 6554 467777777789999999999999999999985542212 456677777777655433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0016 Score=66.29 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=44.4
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCC--cCCCcCCC-CCcccccccccccccccc-ceecccccCCCcccEe
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHS--EHLTKIPD-LSLATNLESLNFQGCTCL-LETHSSIQYLNKLVVL 437 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~--~~l~~~p~-l~~l~~L~~L~L~~c~~l-~~~p~~i~~L~~L~~L 437 (909)
..|+.|++.+..++++ ..+..|++|++|.+|.| +....++. ...+|+|++|++++|.+- .+-...+..+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 3455555555444433 22445667777777776 44444443 345577777777776543 1112234555666666
Q ss_pred ccccccC
Q 039311 438 NLKHCRS 444 (909)
Q Consensus 438 ~L~~c~~ 444 (909)
++.+|..
T Consensus 122 dl~n~~~ 128 (260)
T KOG2739|consen 122 DLFNCSV 128 (260)
T ss_pred hcccCCc
Confidence 6666653
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0083 Score=58.76 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=45.0
Q ss_pred eeEEEcCCCCccccccccc-cCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQ-RLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c 442 (909)
=+.++|++.++..+.. ++ -+.....+||++|. +..++.|..++.|.+|.+.+|....--|.--..+++|..|.|.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3455555555443322 22 13456788888876 556677778888888888776544333322234555666666663
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.00054 Score=62.57 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=60.6
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQ 416 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~ 416 (909)
..+|...++++|.++++|..| .+..++.|+|.+|.|..+|.++..++.|+.|+++.|.+...+.-+..+.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 356777888888888888877 344788888888888888888888888888888888765544445556667777666
Q ss_pred ccc
Q 039311 417 GCT 419 (909)
Q Consensus 417 ~c~ 419 (909)
++.
T Consensus 132 ~na 134 (177)
T KOG4579|consen 132 ENA 134 (177)
T ss_pred CCc
Confidence 643
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.022 Score=55.71 Aligned_cols=70 Identities=24% Similarity=0.406 Sum_probs=50.0
Q ss_pred CCCeEEEEEeCCCCHHH---------HHHHh-hccCC-CCCCCEEEEEeCCchh---hhhcCCCcEEECCCCCHHHHHHH
Q 039311 48 SRKKVLIVFDDVSTSEQ---------MEFLI-GNQGW-LMQGSRLIITARDKQV---LKNCGVDTIYEVKELFDDDARML 113 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~~~---------~~~l~-~~~~~-~~~gSrIivTTR~~~v---~~~~~~~~~y~l~~L~~~es~~L 113 (909)
+.+++++|||++++... +..+. .-... ..++.+||||+|.... .........+++.++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999986443 22222 22221 3578999999999776 33344456899999999999999
Q ss_pred HHHh
Q 039311 114 FSRY 117 (909)
Q Consensus 114 F~~~ 117 (909)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8654
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.00083 Score=68.21 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=25.7
Q ss_pred cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCC
Q 039311 453 HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 453 ~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 510 (909)
+++.|+..+||+|..-..+|+.+ -..|.+-+.|++|.|++|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L----------------~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEEL----------------GDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCCcceeeeccccccCcccchHH----------------HHHHhcCCCceeEEeecCC
Confidence 57777777777766555444322 1234556667777777664
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0046 Score=62.95 Aligned_cols=185 Identities=20% Similarity=0.227 Sum_probs=92.5
Q ss_pred CCCccEEEeeCCCCCc-----cCCCC-CCCCeeEEEcCCCCcc----ccc-------cccccCCCCCEEecCCCcCCCcC
Q 039311 339 STELRYLQWHGCPLKS-----LSSKI-PPENLVSLEMPHSSIK----QLW-------KGVQRLVNLKHINLSHSEHLTKI 401 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~i~----~lp-------~~~~~L~~L~~L~Ls~~~~l~~~ 401 (909)
+..+..++++||-+.. +...+ .-++|+..+++.-... +++ +.+-++++|+..+||+|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5667777777775421 22222 3456666666643221 222 33446667777777776655554
Q ss_pred CC-----CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC----
Q 039311 402 PD-----LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP---- 472 (909)
Q Consensus 402 p~-----l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp---- 472 (909)
|. ++..++|.+|.+.+|.....--.-|+. -|.+| ..+++. .+-+.|++.....|. +...|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~nKKa------a~kp~Le~vicgrNR-lengs~~~~ 177 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYNKKA------ADKPKLEVVICGRNR-LENGSKELS 177 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHHhhh------ccCCCceEEEeccch-hccCcHHHH
Confidence 42 455666666666665432111111110 01111 111111 124556666554432 22222
Q ss_pred ----ccccCcceeeccccCccc--c----CcccccCCCCCEEeccCCCCCCc----CcccccCCCCCCeeeccccc
Q 039311 473 ----ELSCNIEELSLDGTAIQE--F----PSSIERLSSLILLNLGNCLRLEG----LPSKICKLKSLERLNLAEAL 534 (909)
Q Consensus 473 ----~~~~~L~~L~L~~~~i~~--l----p~~i~~l~~L~~L~L~~c~~l~~----lp~~l~~L~~L~~L~l~~~l 534 (909)
+.-.+|+.+.+..|.|.. + -..+..+++|+.|+|.+|..... +...+...+.|+.|.+..|+
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 122467788888887761 1 12245678888888888755432 22334455556666665543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.0013 Score=60.06 Aligned_cols=58 Identities=26% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCC
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 638 (909)
++.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..++
T Consensus 76 f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 4567777777777777777777777777777777777777777766777777776664
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.12 Score=56.30 Aligned_cols=146 Identities=17% Similarity=0.059 Sum_probs=88.3
Q ss_pred CCEEEEEeCCchhhhhc--CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhc-
Q 039311 78 GSRLIITARDKQVLKNC--GVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLC- 154 (909)
Q Consensus 78 gSrIivTTR~~~v~~~~--~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~- 154 (909)
..-|.+|||...+.... ....++++++++.+|..+++.+.+-.....-+ .+....|++.|+|.|-.+..++..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~--~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE--PEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC--HHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44566677765443331 12457899999999999999988754322111 35678899999999966555544321
Q ss_pred -----C-C--CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhhe-eeeeccCC-CCHHHHHHHHHhcCCCcccc
Q 039311 155 -----G-R--RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFL-DIASFFKG-EDKDCVIKFLDGCGFSAEIG 224 (909)
Q Consensus 155 -----~-~--~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl-~~a~f~~~-~~~~~li~~w~~~g~~~~~~ 224 (909)
+ . +.+..+. ....+...|.+++.+++..+. .++.+..+ ...+.+...+...-...+..
T Consensus 208 ~a~~~~~~~it~~~v~~------------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~ 275 (305)
T TIGR00635 208 FAQVRGQKIINRDIALK------------ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDV 275 (305)
T ss_pred HHHHcCCCCcCHHHHHH------------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHh
Confidence 0 0 1222222 223356678899988877554 33444322 24555555554444445555
Q ss_pred hh-HhhhccccEEe
Q 039311 225 IS-VLVDKCLMVIL 237 (909)
Q Consensus 225 i~-~L~~~~li~~~ 237 (909)
++ .|++++||...
T Consensus 276 ~e~~Li~~~li~~~ 289 (305)
T TIGR00635 276 YEPYLLQIGFLQRT 289 (305)
T ss_pred hhHHHHHcCCcccC
Confidence 77 69999999754
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.52 Score=53.49 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=105.4
Q ss_pred ChHHHHHHHHHHHhcCCCC-cccCCccchHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhhccCCCCCCCE--E
Q 039311 13 GLAHLRQILLSAILDDGNV-SIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTSE------QMEFLIGNQGWLMQGSR--L 81 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~-~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~~~~~~~gSr--I 81 (909)
+...+..+++.++.+.... ...+.++....+.+.++ ++.++||||+++... .+..+..... ...+++ |
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~v 176 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGV 176 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEE
Confidence 4456777888888632211 12233455667777775 456899999998753 3444443322 223455 6
Q ss_pred EEEeCCchhhhhcC-------CCcEEECCCCCHHHHHHHHHHhh---cCCCCCC-chhHHHHHHHHHHhCCCchHHHHHh
Q 039311 82 IITARDKQVLKNCG-------VDTIYEVKELFDDDARMLFSRYA---FGKNYPN-VGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 82 ivTTR~~~v~~~~~-------~~~~y~l~~L~~~es~~LF~~~a---f~~~~~~-~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
|.+|.+..+..... ....+.+++++.++..+++...+ |.....+ +-...+++.+....|..+.|+.++-
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 77777765444321 12467899999999999998765 3222222 2334444444444566777877764
Q ss_pred Hhh-----cCC---CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeee
Q 039311 151 RFL-----CGR---RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIA 199 (909)
Q Consensus 151 ~~L-----~~~---~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a 199 (909)
.+. ++. +.+..+.+++++. .....-.+.+||.++|..+..++
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 432 222 5777777777662 12233457789988876554433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.0068 Score=70.79 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=65.7
Q ss_pred CCCCCEEeccCCCCCCc--CcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccccccc
Q 039311 498 LSSLILLNLGNCLRLEG--LPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLL 575 (909)
Q Consensus 498 l~~L~~L~L~~c~~l~~--lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 575 (909)
++.|+.|.+..|..... +-.....++.|+.|++..+.... .... .........+++|+.|+++. |....+..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~-~~~~~~~~~~~~L~~l~l~~--~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLI--TLSP-LLLLLLLSICRKLKSLDLSG--CGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccc--ccch-hHhhhhhhhcCCcCccchhh--hhccCchhH
Confidence 56777777777766554 22334556666666664320000 0000 00111233446666666666 444443333
Q ss_pred CccCC-CCCCCEEecCCCC-CCC--cccccCCCCCCcEEECCCCCCe---ecchhhccCCCCCEEeecC
Q 039311 576 PISFG-LTSLTYLRLTDCG-IIE--LPECLGQLSSRSILLLEKNNFE---RIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 576 ~~~~~-l~~L~~L~Ls~~~-l~~--lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~L~~ 637 (909)
..+.. +++|+.|.+.+|. +++ +-.....+++|+.|+|++|... .+.....++++|+.|.+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 33222 5666776666665 332 3334455666666666665432 2333334455555444433
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.03 Score=57.36 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCCCEEecCCCcCCCcCCCCCccccccccccccc--cccceecccccCCCcccEeccccccC--ccccCccccCCcCcE
Q 039311 384 LVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCRS--LTSLSTSIHLGSLKK 459 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c--~~l~~~p~~i~~L~~L~~L~L~~c~~--l~~lp~~~~l~~L~~ 459 (909)
+..|+.|.+.++. ++.+..+..+++|++|.++.| .....++.....+++|++|++++|.. +..++....+.+|..
T Consensus 42 ~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 4445555555543 455566788899999999998 55666676777789999999999642 334444446778888
Q ss_pred EEccCCCCC
Q 039311 460 LILSGCSNL 468 (909)
Q Consensus 460 L~Ls~c~~l 468 (909)
|++..|...
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 888887643
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.0033 Score=64.24 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=24.0
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCC
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHS 395 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~ 395 (909)
.+.|+..|+.+..+.-...+..|++|.|+-|+|+.| ..+..+++|+.|.|..|
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN 73 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc
Confidence 444555555555444333444455555555444444 22334444444444443
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.55 Score=51.78 Aligned_cols=152 Identities=16% Similarity=0.053 Sum_probs=89.7
Q ss_pred CCEEEEEeCCchhhhhc--CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcC
Q 039311 78 GSRLIITARDKQVLKNC--GVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCG 155 (909)
Q Consensus 78 gSrIivTTR~~~v~~~~--~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~ 155 (909)
.+-|..|||...+.... ....++++++++.++..+++.+.+-.....-+ .+....|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~--~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID--EEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 34566777765444332 12357899999999999999988755432221 35688999999999965554444321
Q ss_pred CCHHHHHHHHHHHhcCCC---cchhhhhhhcccCCChhhhhhhe-eeeeccCCC-CHHHHHHHHHhcCCCcccchh-Hhh
Q 039311 156 RRIKDWESTIKKIKRIPH---VDIQKVLKVSFDGLDDEEQNLFL-DIASFFKGE-DKDCVIKFLDGCGFSAEIGIS-VLV 229 (909)
Q Consensus 156 ~~~~~W~~~l~~L~~~~~---~~i~~~L~~sy~~L~~~~k~cfl-~~a~f~~~~-~~~~li~~w~~~g~~~~~~i~-~L~ 229 (909)
.|..+-. -+.... ....+.+...|.+|+...+..+. ....|..+. ..+.+...+...--..+..++ .|+
T Consensus 228 ----~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 228 ----DFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ----HHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 1111100 000000 12344567778889888877664 444454443 555555544333334444566 899
Q ss_pred hccccEEe
Q 039311 230 DKCLMVIL 237 (909)
Q Consensus 230 ~~~li~~~ 237 (909)
+++||+..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99999754
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.32 Score=50.32 Aligned_cols=109 Identities=20% Similarity=0.165 Sum_probs=58.1
Q ss_pred cchHHHHHhhC--CCeEEEEEeCCCCHH-------H-HHHHhhccCC--CCCCCEEEEEeCCchhhhh--------cCCC
Q 039311 38 IGLNFRSKRLS--RKKVLIVFDDVSTSE-------Q-MEFLIGNQGW--LMQGSRLIITARDKQVLKN--------CGVD 97 (909)
Q Consensus 38 ~~~~~i~~~L~--~kr~LlVLDDv~~~~-------~-~~~l~~~~~~--~~~gSrIivTTR~~~v~~~--------~~~~ 97 (909)
.....+.+.++ +++++||+||+.... . ...+...+.. ....-.+|+++-+..+... .+..
T Consensus 104 ~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~ 183 (234)
T PF01637_consen 104 SALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRF 183 (234)
T ss_dssp --HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT--
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccccc
Confidence 44455555554 356999999997655 1 2222222211 2233445566655555544 2333
Q ss_pred cEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHH
Q 039311 98 TIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 98 ~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
..+.+++++.+++++++...+-....- +.-.+-.++|...++|.|..|.
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 469999999999999998864332110 1123456999999999998775
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.0043 Score=63.41 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc--cccccCCCCC
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW--KGVQRLVNLK 388 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp--~~~~~L~~L~ 388 (909)
+.+.+.|++.++.+.+ +.+- .+++.|.+|.|+-|.+++|.+.-.+.+|++|.|+.|.|..+- .-++++++|+
T Consensus 18 l~~vkKLNcwg~~L~D----Isic--~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----ISIC--EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccH----HHHH--HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 4455566666543322 1110 127889999999999999988889999999999999998775 3478899999
Q ss_pred EEecCCCcCCCcCCC------CCccccccccc
Q 039311 389 HINLSHSEHLTKIPD------LSLATNLESLN 414 (909)
Q Consensus 389 ~L~Ls~~~~l~~~p~------l~~l~~L~~L~ 414 (909)
+|.|..|.-.+.-+. +..+|||+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999988876665542 44567777766
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.16 Score=47.39 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=53.6
Q ss_pred hHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhhc------CCCcEEECCCCCHHHH
Q 039311 40 LNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNC------GVDTIYEVKELFDDDA 110 (909)
Q Consensus 40 ~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~------~~~~~y~l~~L~~~es 110 (909)
.+.+.+....++.+|+||+|....+|......+-..++..+||+|+.....+..- |....++|.+|+..|.
T Consensus 51 ~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 51 LEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3455555555789999999999999888777666566778999999988776431 2235789999998874
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.059 Score=33.03 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=8.4
Q ss_pred CcEEECCCCCCeecchh
Q 039311 607 RSILLLEKNNFERIPES 623 (909)
Q Consensus 607 L~~L~L~~n~l~~lp~~ 623 (909)
|++|+|++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44455555555555544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.08 Score=32.44 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=11.2
Q ss_pred CeeEEEcCCCCccccccccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQ 382 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~ 382 (909)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35556666666655555543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.68 E-value=2.7 Score=46.90 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.++|+||++.. ...+.|...+..-..+..+|++|.+.+ +.... ..-..+.+.+++.++..++....... .+
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~~ 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--LP 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--CC
Confidence 45668999999753 446666666654445677777777664 33322 22358999999999999999775311 11
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
+ ..+ ..++..++|.|+.+..+.
T Consensus 218 -~--~~~-~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 218 -D--DPR-AALAALAEGSVGRALRLA 239 (365)
T ss_pred -H--HHH-HHHHHHcCCCHHHHHHHh
Confidence 1 122 678999999998766553
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.57 E-value=2.8 Score=43.41 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=59.5
Q ss_pred EEEEeCCCC----HHHHHHHhhccCCCCCCCEEEEEeC---------CchhhhhcCCCcEEECCCCCHHHHHHHHHHhhc
Q 039311 53 LIVFDDVST----SEQMEFLIGNQGWLMQGSRLIITAR---------DKQVLKNCGVDTIYEVKELFDDDARMLFSRYAF 119 (909)
Q Consensus 53 LlVLDDv~~----~~~~~~l~~~~~~~~~gSrIivTTR---------~~~v~~~~~~~~~y~l~~L~~~es~~LF~~~af 119 (909)
+|+||||.. .+.+-.+..... ..|..||+|++ ..++...+....+++++++++++-.+++.+++-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 788899954 223333332222 24677888886 345566666678999999999999999988874
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCchHHH
Q 039311 120 GKNYPNVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 120 ~~~~~~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
...-.-+ .++..-|++.+.|..-++.
T Consensus 168 ~~~~~l~--~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 168 DRQLYVD--PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HcCCCCC--HHHHHHHHHHhhhhHHHHH
Confidence 3221111 4566777777777665554
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=89.90 E-value=7 Score=43.73 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=97.5
Q ss_pred ChHHHHHHHHHHHhc-CCCC--cccCCccchHHHHHhhC--CCeEEEEEeCCCCHH-----HHHHHhhccCC-CCCCC--
Q 039311 13 GLAHLRQILLSAILD-DGNV--SIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTSE-----QMEFLIGNQGW-LMQGS-- 79 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~-~~~~--~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~-----~~~~l~~~~~~-~~~gS-- 79 (909)
+...+..+++.++.+ +... ...+..+....+.+.+. +++++||||+++... .+..+.....+ ..+++
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 456777888888852 1111 11122233455666663 568999999998762 13333322111 12223
Q ss_pred EEEEEeCCchhhhhcC-------CCcEEECCCCCHHHHHHHHHHhhc---CCCCCCchhHHHHHHHHHHhCCCc-hHHHH
Q 039311 80 RLIITARDKQVLKNCG-------VDTIYEVKELFDDDARMLFSRYAF---GKNYPNVGYMELSNKIIKYAKGVP-LAIKV 148 (909)
Q Consensus 80 rIivTTR~~~v~~~~~-------~~~~y~l~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~iv~~c~GlP-Lal~~ 148 (909)
.+|.+|.+........ ....+++++.+.++..+++...+- .....+++..+...+++....|.| .|+.+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566665554322221 125688999999999999987753 222233444455666777777887 44433
Q ss_pred HhHhh-----cC---CCHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhhee
Q 039311 149 LGRFL-----CG---RRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLD 197 (909)
Q Consensus 149 lg~~L-----~~---~~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~ 197 (909)
+-.+. .+ .+.+..+.+.+.+.. ....-+..+||.++|..+..
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~~-------~~~~~~i~~l~~~~~~~l~a 296 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIEK-------DRLLELIRGLPTHSKLVLLA 296 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-------HHHHHHHHcCCHHHHHHHHH
Confidence 32221 12 256666666665521 22233456788877765543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.6 Score=40.31 Aligned_cols=83 Identities=20% Similarity=0.361 Sum_probs=31.2
Q ss_pred eCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccccc
Q 039311 303 LNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWK 379 (909)
Q Consensus 303 ~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~ 379 (909)
+...+|.++++|+.+.+... .. .+. ...+. ...|+.+.+.++ +..++... ....|+.+.+.+ .+..++.
T Consensus 3 i~~~~F~~~~~l~~i~~~~~-~~----~I~-~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~ 74 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT-IK----KIG-ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD 74 (129)
T ss_dssp E-TTTTTT-TT--EEEETST-------EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T
T ss_pred ECHHHHhCCCCCCEEEECCC-ee----EeC-hhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc
Confidence 44567777777777776521 10 110 11122 334555555443 44444322 333455555543 3333332
Q ss_pred -ccccCCCCCEEecC
Q 039311 380 -GVQRLVNLKHINLS 393 (909)
Q Consensus 380 -~~~~L~~L~~L~Ls 393 (909)
.+..+++|+.+++.
T Consensus 75 ~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTT-TTECEEEET
T ss_pred ccccccccccccccC
Confidence 22334555555543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.2 Score=28.55 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=2.5
Q ss_pred CEEeecC
Q 039311 631 FSLGISH 637 (909)
Q Consensus 631 ~~L~L~~ 637 (909)
+.|+|++
T Consensus 4 ~~L~l~~ 10 (17)
T PF13504_consen 4 RTLDLSN 10 (17)
T ss_dssp SEEEETS
T ss_pred CEEECCC
Confidence 3333333
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.31 Score=27.75 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.0
Q ss_pred CCCEEecCCCCCCC
Q 039311 583 SLTYLRLTDCGIIE 596 (909)
Q Consensus 583 ~L~~L~Ls~~~l~~ 596 (909)
+|+.|+|++|++.+
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
|
... |
| >PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.39 Score=28.50 Aligned_cols=20 Identities=55% Similarity=1.077 Sum_probs=17.6
Q ss_pred CeeEEEcCCCCccccccccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQ 382 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~ 382 (909)
+|+.|+|+++++++||++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998753
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.6 Score=45.12 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=57.2
Q ss_pred EEEEEeCCCCHH---H-HHHHhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHHHHHHHHHHh
Q 039311 52 VLIVFDDVSTSE---Q-MEFLIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDDDARMLFSRY 117 (909)
Q Consensus 52 ~LlVLDDv~~~~---~-~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~es~~LF~~~ 117 (909)
-+||||||+... . .+.+...+.. ...+.+||+||+.. .+...+.....+++.++++++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 389999997543 2 2334332221 12345899988753 22223333468999999999999988765
Q ss_pred hcCCCCCCchhHHHHHHHHHHhCCCchHHHHH
Q 039311 118 AFGKNYPNVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 118 af~~~~~~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
+-+...+-+ .+..+.+++.+.|.|..+..+
T Consensus 172 ~~~~~~~~~--~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 172 AARRGLQLP--DEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHHcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 432221111 244566777788877666554
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.96 E-value=4.8 Score=44.00 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=63.6
Q ss_pred CeEEEEEeCC--CCHHHHHHHhhccCCCCCCCEEEEEeCCchhh-hhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDV--STSEQMEFLIGNQGWLMQGSRLIITARDKQVL-KNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv--~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
++=++|+||+ .+.+.++.|...+..-.+++.+|++|.+.+.+ ... ..-.++++.++++++..+..... +++..
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~-~~~~~-- 169 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYK-YNDIK-- 169 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHH-hcCCC--
Confidence 4445555555 56677999999888777899999998765422 221 12358999999999987766543 32111
Q ss_pred chhHHHHHHHHHHhCCCchHHHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
.+.++.++.+++|.|..+...
T Consensus 170 ---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 170 ---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 233678899999998766544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.62 E-value=5.1 Score=48.21 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=134.3
Q ss_pred CChHHHHHHHHHHHhcCCCCcc------------cCCccchHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhhc
Q 039311 12 GGLAHLRQILLSAILDDGNVSI------------GCPSIGLNFRSKRLS--RKKVLIVFDDVSTSE------QMEFLIGN 71 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~------------~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~ 71 (909)
.+..++.+.++..|..-..... .+.......+...|. .+...+||||-.-.. .++.+...
T Consensus 77 ndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~ 156 (894)
T COG2909 77 NDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH 156 (894)
T ss_pred CCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh
Confidence 4666777777777752111111 122234445555554 367899999975322 24444443
Q ss_pred cCCCCCCCEEEEEeCCch---hhhhcCCCcEEECC----CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 72 QGWLMQGSRLIITARDKQ---VLKNCGVDTIYEVK----ELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 72 ~~~~~~gSrIivTTR~~~---v~~~~~~~~~y~l~----~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
. .+|=..|||||..- +++.--.+...++. .++.+|+-++|...-. ..-. ..=++.+.++..|-+-
T Consensus 157 ~---P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~Ld----~~~~~~L~~~teGW~~ 228 (894)
T COG2909 157 A---PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-LPLD----AADLKALYDRTEGWAA 228 (894)
T ss_pred C---CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-CCCC----hHHHHHHHhhcccHHH
Confidence 3 47889999999973 33222123445555 5889999999976631 1111 1225677777888888
Q ss_pred HHHHHhHhhcCC-CHHHHHHHHHHHhcCCCcchhh-hhhhcccCCChhhhhhheeeeeccCCCCHHHHHHHHHhcCCCcc
Q 039311 145 AIKVLGRFLCGR-RIKDWESTIKKIKRIPHVDIQK-VLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAE 222 (909)
Q Consensus 145 al~~lg~~L~~~-~~~~W~~~l~~L~~~~~~~i~~-~L~~sy~~L~~~~k~cfl~~a~f~~~~~~~~li~~w~~~g~~~~ 222 (909)
|+..++=.+++. +.+.--..+. .. .+.+.+ ...=-+|.||+++|.-.+-+|.+..- -+.++.-+.+.+ .+.
T Consensus 229 al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f--~~eL~~~Ltg~~-ng~ 301 (894)
T COG2909 229 ALQLIALALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF--NDELCNALTGEE-NGQ 301 (894)
T ss_pred HHHHHHHHccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh--hHHHHHHHhcCC-cHH
Confidence 888777777732 3222111111 00 111111 11112578999999888878777432 233333333322 244
Q ss_pred cchhHhhhccccEEe----CCeEEehHHHHHHHHHHhhhc
Q 039311 223 IGISVLVDKCLMVIL----NNKIMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 223 ~~i~~L~~~~li~~~----~~~~~mhdll~e~~~~i~~~~ 258 (909)
..+++|..++|+-.. .+-+..|.+..|+-+.-.+.+
T Consensus 302 amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 302 AMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 568999999988754 456999999999877655543
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=85.92 E-value=2.8 Score=46.99 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=57.2
Q ss_pred CeEEEEEeCCCCH-------------H---HHHHHhhccCCC--CCCCEEEEEeCCch-----hhhhcCCCcEEECCCCC
Q 039311 50 KKVLIVFDDVSTS-------------E---QMEFLIGNQGWL--MQGSRLIITARDKQ-----VLKNCGVDTIYEVKELF 106 (909)
Q Consensus 50 kr~LlVLDDv~~~-------------~---~~~~l~~~~~~~--~~gSrIivTTR~~~-----v~~~~~~~~~y~l~~L~ 106 (909)
...+|+|||++.. + .+..+...+..+ ..+.+||.||...+ +......+..+++...+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 4579999999753 1 133333333322 24678888988543 33222346789999999
Q ss_pred HHHHHHHHHHhhcCCCCC-CchhHHHHHHHHHHhCCCc
Q 039311 107 DDDARMLFSRYAFGKNYP-NVGYMELSNKIIKYAKGVP 143 (909)
Q Consensus 107 ~~es~~LF~~~af~~~~~-~~~~~~l~~~iv~~c~GlP 143 (909)
.++..++|..++.+.... +.++ ..+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 999999999998765533 2344 44555566653
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=85.00 E-value=8.1 Score=44.10 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEE--eCCch--hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcC
Q 039311 48 SRKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIIT--ARDKQ--VLKNC-GVDTIYEVKELFDDDARMLFSRYAFG 120 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivT--TR~~~--v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~ 120 (909)
.+++.+|+||+|+.. .+.+.+..... .|..++|. |.+.. +.... ..-.++++++++.++..+++.+.+-.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 357889999999854 45666666544 35655553 33321 11111 11268999999999999999876532
Q ss_pred CCCCC-chhHHHHHHHHHHhCCCchHHHHHh
Q 039311 121 KNYPN-VGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 121 ~~~~~-~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
..... .--.+....++++|+|.+..+..+-
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11100 1114567888999999987665443
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=84.85 E-value=2.8 Score=43.59 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=57.1
Q ss_pred eEEEEEeCCCCH---HHHHH-HhhccCC-CCCCCEEEEEeCC---------chhhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 51 KVLIVFDDVSTS---EQMEF-LIGNQGW-LMQGSRLIITARD---------KQVLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 51 r~LlVLDDv~~~---~~~~~-l~~~~~~-~~~gSrIivTTR~---------~~v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
--+|||||+... .+|+. +...+.. ..+|..||+||+. +++...++...+++++++++++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 348999999743 23332 2221111 2356779999984 23333444456899999999999999998
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 117 YAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 117 ~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
+|....-.-+ .+...-+++.+.|-.-
T Consensus 174 ~a~~~~l~l~--~e~~~~La~~~~rd~r 199 (233)
T PRK08727 174 RAQRRGLALD--EAAIDWLLTHGERELA 199 (233)
T ss_pred HHHHcCCCCC--HHHHHHHHHhCCCCHH
Confidence 8764332111 3556677777766543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=84.03 E-value=2.5 Score=38.99 Aligned_cols=73 Identities=29% Similarity=0.435 Sum_probs=24.7
Q ss_pred CeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceec-ccccCCCcccEec
Q 039311 363 NLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLN 438 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~ 438 (909)
+|+.+.+.. .++.++. .+..+.+|+.+.+.++ ...+++ +..+++|+.+.+.. ....++ ..+..+++|+.++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence 444444442 3334432 2334444555555442 233332 44444455555533 112222 2333455555555
Q ss_pred cc
Q 039311 439 LK 440 (909)
Q Consensus 439 L~ 440 (909)
+.
T Consensus 88 ~~ 89 (129)
T PF13306_consen 88 IP 89 (129)
T ss_dssp ET
T ss_pred cC
Confidence 53
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=81.96 E-value=1.2 Score=28.43 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.2
Q ss_pred CCCCcEEECCCCCCeecchhh
Q 039311 604 LSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 604 l~~L~~L~L~~n~l~~lp~~i 624 (909)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=81.96 E-value=1.2 Score=28.43 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.2
Q ss_pred CCCCcEEECCCCCCeecchhh
Q 039311 604 LSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 604 l~~L~~L~L~~n~l~~lp~~i 624 (909)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777543
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=81.57 E-value=7.6 Score=38.80 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=62.7
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+.+-+||+||++.. +.++.+...+....+.+.+|++|++. .+.... ....++++.+++.++..+...+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 45668999999754 44777777776656677788877654 333322 12358999999999998888776 2 1
Q ss_pred CchhHHHHHHHHHHhCCCchH
Q 039311 125 NVGYMELSNKIIKYAKGVPLA 145 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLa 145 (909)
+ .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 35688999999998753
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=13 Score=43.49 Aligned_cols=96 Identities=8% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-+||||+++.. ..++.|...+........+|++|.. +.+.... .....|++.+++.++..+.+.+.+-+....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 4577777777655556666666543 3443333 223589999999999999998877543322
Q ss_pred CchhHHHHHHHHHHhCCCchHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal 146 (909)
.+ .+....|++.++|.+--+
T Consensus 195 i~--~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 AE--PEALQLVARLADGAMRDA 214 (504)
T ss_pred CC--HHHHHHHHHHcCCCHHHH
Confidence 11 356788899999987433
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=80.44 E-value=5.2 Score=41.70 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=56.2
Q ss_pred EEEEEeCCCCH---HHHHHHh-hccCC-CCCC-CEEEEEeCCc---------hhhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 52 VLIVFDDVSTS---EQMEFLI-GNQGW-LMQG-SRLIITARDK---------QVLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 52 ~LlVLDDv~~~---~~~~~l~-~~~~~-~~~g-SrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
-+|+||||... .+|+... ..+.. ...| .+||+||+.. ++...++...+++++++++++-.+.+.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 37899999653 3454322 11111 1134 3789998743 4455556667999999999999999887
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 117 YAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 117 ~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
+|-...-.- -.++..-+++.+.|-.-
T Consensus 179 ~a~~~~~~l--~~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 179 RARLRGFEL--PEDVGRFLLKRLDREMR 204 (235)
T ss_pred HHHHcCCCC--CHHHHHHHHHhhcCCHH
Confidence 664332111 14566677777766543
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.36 E-value=9.6 Score=42.28 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++.. ...+.|...+.....+..+|++|.. ..+.... ..-..+++.+++.++..+...+.+.... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~ 218 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-S 218 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-C
Confidence 46678999999854 4466666655544445555555543 3343322 1125899999999999999987432211 1
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
-.+....+++.++|.|..+..+.
T Consensus 219 ---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 219 ---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 13446789999999998766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 909 | ||||
| 4fcg_A | 328 | Structure Of The Leucine-Rich Repeat Domain Of The | 8e-06 |
| >pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 5e-46
Identities = 59/290 (20%), Positives = 107/290 (36%), Gaps = 20/290 (6%)
Query: 372 SSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYL 431
++++ + + + + + + + N + + L T ++
Sbjct: 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGRALKATADLLEDA 78
Query: 432 N--KLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFP-ELSC--NIEELSLDG 485
V L L+ L L L+ + + LM P + +E L+L
Sbjct: 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLAR 136
Query: 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR 545
++ P+SI L+ L L++ C L LP + + L+ L+ E IR
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196
Query: 546 EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDC-GIIELPECLGQ 603
+P+SIA L+NL L + L + L L L L C + P G
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 604 LSS-RSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLS 652
+ + ++L + +N +P I +L+ L L + C L LP L L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 2e-41
Identities = 75/353 (21%), Positives = 120/353 (33%), Gaps = 85/353 (24%)
Query: 321 SSHYGENVNKVHNFRGL-ESTELRYLQWHGCPLKSLSSKIPP---ENLVSLEMPHSSIKQ 376
HY + N+ H+ S + G LK+ + + V+LE+ + Q
Sbjct: 36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95
Query: 377 LWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVV 436
RL +L+H+ + + L ++PD ++Q L
Sbjct: 96 FPDQAFRLSHLQHMTIDAAG-LMELPD-----------------------TMQQFAGLET 131
Query: 437 LNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNI------------EELSL 483
L L L +L SI L L++L + C L PE + + L L
Sbjct: 132 LTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 484 DGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIA 543
+ T I+ P+SI L +L L + N L L I L LE L+L
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTA-------- 241
Query: 544 IREVPSSIACLKNLGRL------SFESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGIIE 596
+R P L RL + + LP+ LT L L L C +
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLT----------LPLDIHRLTQLEKLDLRGCVNLS 291
Query: 597 -LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELP 648
LP + QL + I+L+ + ++ + R + P P
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQ----------------HRPVARPAEP 328
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 1e-39
Identities = 62/278 (22%), Positives = 98/278 (35%), Gaps = 38/278 (13%)
Query: 407 ATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCS 466
++ E+L FQG T L H + + + S + S + ++
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIETRTGR 66
Query: 467 NLMSFPEL-----SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICK 521
L + +L L L + +FP RLS L + + L LP + +
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQ 125
Query: 522 LKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG 580
LE L LA L+ L P+SIA L L LS + + LP
Sbjct: 126 FAGLETLTLARNPLRAL----------PASIASLNRLRELSIRACPELTE----LPEPLA 171
Query: 581 ----------LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHL 630
L +L LRL GI LP + L + L + + + +I L L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL 231
Query: 631 FSLGISHCERLHSLPELPCDLSDIEA---HCCSSLEAL 665
L + C L + P + + ++ CS+L L
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 9e-32
Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 44/267 (16%)
Query: 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIH-LGSLKKLILSGCSNLMSFPELSCNIE 479
+ +H + + L + +L + + + + N +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQ 59
Query: 480 ELSLDGTAIQEFPSSIERLSSLIL--LNLGNCLRLEGLPSKICKLKSLERLNLAEALKEL 537
+ G A++ +E + L L + L P + +L L+ + +
Sbjct: 60 IETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTI------- 111
Query: 538 KAEGIAIREVPSSIACLKNLGRL-----SFESFMCHEQMGLLLPISFG-LTSLTYLRLTD 591
+ + E+P ++ L L + LP S L L L +
Sbjct: 112 --DAAGLMELPDTMQQFAGLETLTLARNPLRA----------LPASIASLNRLRELSIRA 159
Query: 592 C-GIIELPECLGQLSSRS---------ILLLEKNNFERIPESIIQLSHLFSLGISHCERL 641
C + ELPE L + L LE +P SI L +L SL I + L
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PL 218
Query: 642 HSLPELPCDLSDIE---AHCCSSLEAL 665
+L L +E C++L
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNY 245
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 3e-20
Identities = 32/193 (16%), Positives = 56/193 (29%), Gaps = 30/193 (15%)
Query: 494 SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEA-----------LKELKAEGI 542
S L L + + + + + G
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66
Query: 543 AIREVPSSIACLK-------NLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGI 594
A++ + L + P L+ L ++ + G+
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQ----------FPDQAFRLSHLQHMTIDAAGL 116
Query: 595 IELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSD- 653
+ELP+ + Q + L L +N +P SI L+ L L I C L LPE
Sbjct: 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 654 IEAHCCSSLEALS 666
E +L++L
Sbjct: 177 GEHQGLVNLQSLR 189
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 68/371 (18%), Positives = 126/371 (33%), Gaps = 57/371 (15%)
Query: 329 NKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLK 388
V R + L+ + L SL P +L SL +S+ +L + Q L +L
Sbjct: 60 MAVSRLRDCLDRQAHELELNNLGLSSLPELPP--HLESLVASCNSLTELPELPQSLKSLL 117
Query: 389 HINLSHSE----------------HLTKIPDLSLATNLESLNFQGC--TCLLETHSSIQY 430
N + L K+P+L ++ L+ ++ L +
Sbjct: 118 VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL------ 171
Query: 431 LNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQE 490
L + + + L L +L L + +L P+L ++E + ++E
Sbjct: 172 PPSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEE 229
Query: 491 FPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLA--------EALKELKAEGI 542
P ++ L L + N L+ LP L++L + ++L L
Sbjct: 230 LP-ELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287
Query: 543 AIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLG 602
+ NL L+ S + + SL L +++ +IELP
Sbjct: 288 IFSGLSELP---PNLYYLNASS-------NEIRSLCDLPPSLEELNVSNNKLIELPALPP 337
Query: 603 QLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHC--CS 660
+L L+ N+ +PE L L + + L P++P + D+ +
Sbjct: 338 RLER---LIASFNHLAEVPELPQNLKQLH---VEYN-PLREFPDIPESVEDLRMNSHLAE 390
Query: 661 SLEALSGLSIL 671
E L L
Sbjct: 391 VPELPQNLKQL 401
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-26
Identities = 56/321 (17%), Positives = 110/321 (34%), Gaps = 40/321 (12%)
Query: 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKI 401
L YL L+ L L +++ ++S+K+L +L+ I ++ L ++
Sbjct: 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEEL 188
Query: 402 PDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLI 461
P+L L ++ L+ L + + L L +L L +
Sbjct: 189 PELQNLPFLTAIYADNN--SLK--KLPDLPLSLESIVAGNNI-LEELPELQNLPFLTTIY 243
Query: 462 LSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICK 521
L + P+L ++E L++ + + P + L+ L + GL
Sbjct: 244 ADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE----NIFSGLSELPPN 298
Query: 522 LKSLERLN--------LAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGL 573
L L + L +L+EL + E+P+ L+ L SF
Sbjct: 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL-IASFNHLAE------ 351
Query: 574 LLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSL 633
+ +L L + + E P+ + L ++ +PE L L
Sbjct: 352 ---VPELPQNLKQLHVEYNPLREFPDIPESVED----LRMNSHLAEVPELPQNLKQLH-- 402
Query: 634 GISHCERLHSLPELPCDLSDI 654
+ L P++P + D+
Sbjct: 403 -VETN-PLREFPDIPESVEDL 421
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-22
Identities = 63/325 (19%), Positives = 115/325 (35%), Gaps = 43/325 (13%)
Query: 391 NLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLS 449
L HS +LT++P + ++ V L+ C
Sbjct: 16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR---- 71
Query: 450 TSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNC 509
+L L+ L S PEL ++E L ++ E P + L SL++ N
Sbjct: 72 ------QAHELELNNL-GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124
Query: 510 LRLEGLPSKI-------CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLK--NLGRL 560
L LP + +L+ L L + LK + + +++++P L+ G
Sbjct: 125 -ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 183
Query: 561 SFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERI 620
E LP L LT + + + +LP+ L S ++ N E +
Sbjct: 184 QLEE----------LPELQNLPFLTAIYADNNSLKKLPDLPLSLES---IVAGNNILEEL 230
Query: 621 PESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCS------SLEALSGLSILFTQ 674
PE + L L ++ + L +LP+LP L + ++L+ L +
Sbjct: 231 PE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 288
Query: 675 TSWNSQFFYFVNCFKLDKNELKEII 699
S S+ + NE++ +
Sbjct: 289 FSGLSELPPNLYYLNASSNEIRSLC 313
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 1e-21
Identities = 65/328 (19%), Positives = 116/328 (35%), Gaps = 52/328 (15%)
Query: 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLT 399
+ L+ + LK L P +L + ++ +++L +Q L L I ++ L
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPP--SLEFIAAGNNQLEEL-PELQNLPFLTAIYADNN-SLK 208
Query: 400 KIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKK 459
K+PDL +LES+ +LE +Q L L + + L +L SL+
Sbjct: 209 KLPDLP--LSLESIVAGNN--ILEELPELQNLPFLTTIYADNNL-LKTLPDLP--PSLEA 261
Query: 460 LILSGCSNLMSFPELSCNIEELSLDG---TAIQEFPSSIERL--------------SSLI 502
L + L PEL ++ L + + + E P ++ L SL
Sbjct: 262 LNVRDNY-LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLE 320
Query: 503 LLNLGNCLRLEGLPSKICKLKSLE----RL----NLAEALKELKAEGIAIREVPSSIACL 554
LN+ N +L LP+ +L+ L L L + LK+L E +RE P +
Sbjct: 321 ELNVSNN-KLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESV 379
Query: 555 KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEK 614
++L L + +L L + + E P+ + L +
Sbjct: 380 EDL-----------RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED---LRMNS 425
Query: 615 NNFERIPESIIQLSHLFSLGISHCERLH 642
E + + + H
Sbjct: 426 ERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 7e-13
Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 21/181 (11%)
Query: 476 CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEA-- 533
++E + + E P E + S P + + + L +
Sbjct: 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 534 --LKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLT 590
EL+ + + +P L++L S S LP L SL
Sbjct: 71 RQAHELELNNLGLSSLPELPPHLESL-VASCNSLT-------ELPELPQSLKSLLVDNNN 122
Query: 591 DCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCD 650
+ +LP L L + N E++PE + S L + + + L LP+LP
Sbjct: 123 LKALSDLPPLLEYLG------VSNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDLPPS 174
Query: 651 L 651
L
Sbjct: 175 L 175
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 5e-30
Identities = 64/445 (14%), Positives = 127/445 (28%), Gaps = 70/445 (15%)
Query: 275 IYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVH-- 332
I D+ + + K + G N++
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTNRITFI 440
Query: 333 --NFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHI 390
+ L T+L+ + + P + + E+ S ++L L +L +
Sbjct: 441 SKAIQRL--TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL--SWSNLKDLTDV 496
Query: 391 NLSHSEHLTKIPD-LSLATNLESLN---------FQGCTCLLETHSSIQYLNKLVVLNLK 440
L + ++T++PD L L+SLN Q K+ + +
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
Query: 441 HCRSLTSLSTSIHLG---SLKKLILSGCSNLMSFPELSC--NIEELSLDGTAIQEFPSSI 495
+ +L S L L L + + +L LD I+E P
Sbjct: 557 YN-NLEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF 614
Query: 496 -ERLSSLILLNLGNCLRLEGLPSK--ICKLKSLERLNLAE-------------------- 532
+ L + +L+ +P+ + + ++ +
Sbjct: 615 CAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673
Query: 533 ALKELKAEGIAIREVPSSI-ACLKNLGRL-----SFESFMCHEQMGLLLPISFG-LTSLT 585
+ I++ P+ + A + + S E ++ LT
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI--PENSLKPKDGNYKNTYLLT 731
Query: 586 YLRLTDCGIIELPE--CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHS 643
+ L + L + L S + + N F P + S L + GI H
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG 791
Query: 644 ---LPELPCDLSDIEAHCCSSLEAL 665
L + P ++ C SL L
Sbjct: 792 NRILRQWPTGITT-----CPSLIQL 811
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 8e-28
Identities = 51/377 (13%), Positives = 102/377 (27%), Gaps = 36/377 (9%)
Query: 354 SLSSKIPPE-----NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLAT 408
++P L L S + ++ +
Sbjct: 334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393
Query: 409 NLESLNFQGCTC-LLETHSSIQYLNKLVVLNLKHCR------SLTSLSTSI-HLGSLKKL 460
+ LN + + ++ + K ++LK + +T +S +I L L+ +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453
Query: 461 ILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKIC 520
+ + S + S L L + L NC + LP +
Sbjct: 454 YFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512
Query: 521 KLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM-GLLLPIS 578
L L+ LN+A + + + + S
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG----YNNLEEFPASAS 568
Query: 579 FG-LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQ-LSHLFSLGIS 636
+ L L + L G + L L+ N E IPE + LG S
Sbjct: 569 LQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627
Query: 637 HCERLHSLPELPCDLSDIEAHCCSSLEALS----GLSILFTQTSWNSQFFYFVNCFKLD- 691
H +L +P A + ++ + S + + +N +
Sbjct: 628 HN-KLKYIPN------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680
Query: 692 -KNELKEIIKDAQRKMQ 707
NE+++ +
Sbjct: 681 SYNEIQKFPTELFATGS 697
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 9e-22
Identities = 50/397 (12%), Positives = 124/397 (31%), Gaps = 70/397 (17%)
Query: 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENV-NKVHNFRGLESTELRY 344
A++ + K+ S++N+ L + Y+ + + +++ L+S +
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524
Query: 345 LQWHGCP-LKSLSSKIPPE-----NLVSLEMPHSSIKQL--WKGVQRLVNLKHINLSHSE 396
+ LK+ +++ + + M ++++++ +Q++V L ++ H+
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN- 583
Query: 397 HLTKIPDLSLATNLESLNFQGCTCLLET--HSSIQYLNKLVVLNLKHCRSLTSLSTSIHL 454
+ + L L +E + +++ L H + L + +
Sbjct: 584 KVRHLEAFGTNVKLTDLKLDYN--QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA 640
Query: 455 GSLKKL---ILSG-------CSNLMSFPELSC-NIEELSLDGTAIQEFPSSI-ERLSSLI 502
S+ + S + S + N ++L IQ+FP+ + S +
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700
Query: 503 LLNL-GNCLR------LEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIAC-- 553
+ L N + L+ L ++L + +
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK---------LTSLSDDFRATT 751
Query: 554 LKNLGRLS-----FESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGII-------ELPEC 600
L L + F S P + L + + P
Sbjct: 752 LPYLSNMDVSYNCFSS----------FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801
Query: 601 LGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH 637
+ S L + N+ ++ E + L+ L I+
Sbjct: 802 ITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIAD 836
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 2e-16
Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 48/304 (15%)
Query: 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHL 398
+L L ++ L + L L++ ++ I+++ + ++ + SH+ L
Sbjct: 573 VKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KL 631
Query: 399 TKIPDLSLATNLESL--------NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLST 450
IP++ A ++ + + + L + + T
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPT 690
Query: 451 SI--HLGSLKKLILSGCSNLMSFPELSC-----------NIEELSLDGTAIQEFPSSIE- 496
+ + +ILS + S PE S + + L +
Sbjct: 691 ELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 497 -RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLK 555
L L +++ P++ L+ + +R+ P+ I
Sbjct: 750 TTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR--DAEGNRILRQWPTGITTCP 806
Query: 556 NLGRLS-----FESFMCHEQMGLLLPISFGLTSLTYLRLTDCGI--IELPECLGQLSSRS 608
+L +L + L L + D I++ + +
Sbjct: 807 SLIQLQIGSNDIRK----------VDEKL-TPQLYILDIADNPNISIDVTSVCPYIEAGM 855
Query: 609 ILLL 612
+LL
Sbjct: 856 YVLL 859
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-15
Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 38/285 (13%)
Query: 412 SLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMS 470
+ N + + + ++ L+L + + +I L LK L S +S
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362
Query: 471 FPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530
+ +++ L L+ ++ ++K +++ +
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422
Query: 531 AEALKELKAEGI--AIREVPSSIACLKNLGRLSF---------------ESFMCHEQMGL 573
LK+ + + I + +I L L + F ++ + +
Sbjct: 423 IS-LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481
Query: 574 LLPISFG-LTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE----------RIP 621
+S+ L LT + L +C + +LP+ L L L + N R+
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541
Query: 622 ESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALS 666
+ + + + L P L L L
Sbjct: 542 DDEDTGPKIQIFYMGYN-NLEEFPA-SASLQK-----MVKLGLLD 579
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 22/186 (11%), Positives = 53/186 (28%), Gaps = 15/186 (8%)
Query: 494 SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIA 552
++ + L+L +P I +L L+ L+ + P
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 553 CLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDC-GIIELPECLGQLSSRSILL 611
K+ R+ + ++M L L+ L + + + + + +
Sbjct: 378 ERKHRIRMHY------KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431
Query: 612 LEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCC------SSLEAL 665
N I ++I +L+ L + ++ + S L
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490
Query: 666 SGLSIL 671
L+ +
Sbjct: 491 KDLTDV 496
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 4e-28
Identities = 83/377 (22%), Positives = 146/377 (38%), Gaps = 48/377 (12%)
Query: 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLT 399
E + S+ + + +L+ IK + GV+ L NL IN S++ LT
Sbjct: 24 AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QLT 81
Query: 400 KIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKK 459
I L T L + + + + L L L L + + +T + +L +L +
Sbjct: 82 DITPLKNLTKLVDILMNN--NQIADITPLANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNR 138
Query: 460 LILSGCSNLMSFPELS--CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPS 517
L LS + LS ++++LS + L++L L++ + ++ +
Sbjct: 139 LELSSN-TISDISALSGLTSLQQLSFGNQVTD--LKPLANLTTLERLDISSN-KVSDISV 194
Query: 518 KICKLKSLERLNLAE-------------ALKELKAEGIAIREVPSSIACLKNLGRLSFES 564
+ KL +LE L L EL G ++++ ++A L NL L
Sbjct: 195 -LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD--- 249
Query: 565 FMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624
+ + Q+ L P+S GLT LT L+L I + L L++ + L L +N E I I
Sbjct: 250 -LANNQISNLAPLS-GLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-I 305
Query: 625 IQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYF 684
L +L L + + + + SSL L L + S S
Sbjct: 306 SNLKNLTYLTLYFN-NISDISPV------------SSLTKLQRLFFYNNKVSDVSSLANL 352
Query: 685 VNCFKLD--KNELKEII 699
N L N++ ++
Sbjct: 353 TNINWLSAGHNQISDLT 369
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 4e-24
Identities = 81/416 (19%), Positives = 141/416 (33%), Gaps = 66/416 (15%)
Query: 279 LTNNTGTEAIEGISLDMSKVKEIHLNA------GSFTNMHKLRFFKFYSSHYGENVNKVH 332
I+G+ ++ + +I+ + N+ KL + N++
Sbjct: 53 ADRLGIKS-IDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN-------NQIA 103
Query: 333 NFRGLES-TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHIN 391
+ L + T L L + + NL LE+ ++I + + L +L+ ++
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLS 162
Query: 392 LSHS-------EHLTKIPDLSLA-------------TNLESLNFQGCTCLLETHSSIQYL 431
+ +LT + L ++ TNLESL + + + L
Sbjct: 163 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN--QISDITPLGIL 220
Query: 432 NKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSC--NIEELSLDGTAIQ 489
L L+L + L + T L +L L L+ + + LS + EL L I
Sbjct: 221 TNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQIS 278
Query: 490 EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-------------ALKE 536
+ L++L L L +LE + I LK+L L L L+
Sbjct: 279 NISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQR 335
Query: 537 LKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE 596
L + +V S +A L N+ LS H Q+ L P++ LT +T L L D
Sbjct: 336 LFFYNNKVSDVSS-LANLTNINWLSAG----HNQISDLTPLA-NLTRITQLGLNDQAWTN 389
Query: 597 LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLS 652
P S + P +I I+ E+ S
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW-NLPSYTNEVSYTFS 444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 45/264 (17%), Positives = 103/264 (39%), Gaps = 30/264 (11%)
Query: 387 LKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT 446
L ++ + +I + + S L+++ L +
Sbjct: 3 LGSATITQDTPINQIFTDTALAEKMKTVLGK--TNVTDTVSQTDLDQVTTLQADRLG-IK 59
Query: 447 SLSTSIHLGSLKKLILSGCSNLMSFPELSC--NIEELSLDGTAIQEFPSSIERLSSLILL 504
S+ +L +L ++ S L L + ++ ++ I + + L++L L
Sbjct: 60 SIDGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGL 117
Query: 505 NLGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFE 563
L N ++ + + L +L RL L+ + ++ S+++ L +L +LSF
Sbjct: 118 TLFNN-QITDIDP-LKNLTNLNRLELSSNTISDI-----------SALSGLTSLQQLSF- 163
Query: 564 SFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623
Q+ L P++ LT+L L ++ + ++ L +L++ L+ N I
Sbjct: 164 ----GNQVTDLKPLA-NLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP- 216
Query: 624 IIQLSHLFSLGISHCERLHSLPEL 647
+ L++L L ++ +L + L
Sbjct: 217 LGILTNLDELSLNGN-QLKDIGTL 239
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 3e-27
Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 34/245 (13%)
Query: 45 KRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNC-GVDTIYEVK 103
+ R L VFDDV E + + R ++T RD ++ EV
Sbjct: 238 ALIDRPNTLFVFDDVVQEETIRWAQEL------RLRCLVTTRDVEISNAASQTCEFIEVT 291
Query: 104 ELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWE- 162
L D+ Y ++ NK I+ + G P + + + + +
Sbjct: 292 SLEIDECYDFLEAYGMPMPVGEK-EEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQ 350
Query: 163 ----------STIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGED--KDCV 210
++ I + + L+ + L DE+++ G D
Sbjct: 351 LNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLW 410
Query: 211 IKFLDGCGFSAEIG---------ISVLVDKCLMVILNNK----IMMHDLLQEMGREIVRQ 257
+ S E + L + ++ + ++ + +V
Sbjct: 411 SCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470
Query: 258 ESIKD 262
++I +
Sbjct: 471 QTIAN 475
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 118 bits (295), Expect = 4e-27
Identities = 82/447 (18%), Positives = 145/447 (32%), Gaps = 111/447 (24%)
Query: 3 NVSEESEKSGGLAHLRQILLSAILDDGNVSIGC-----PSIGLNFRSKRLSR-------K 50
N+ + L L Q LL I D N + + ++ L R +
Sbjct: 188 NLKNCNSPETVLEML-QKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 51 KVLIVFDDVSTSEQME-FLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEV------K 103
L+V +V ++ F + ++++T R KQV T +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLS--------CKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 104 ELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWES 163
L D+ + L +Y + +L +++ P + + I+D +
Sbjct: 297 TLTPDEVKSLLLKYL------DCRPQDLPREVLT---TNPRRLS-----IIAESIRDGLA 342
Query: 164 TIKKIKRIPHVDIQKVLKVSFDGLD-DEEQNLFLDIASFFKGEDKDCVI--KFL-----D 215
T K + + +++ S + L+ E + +F ++ F I L D
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF----PPSAHIPTILLSLIWFD 398
Query: 216 GCGFSAEIGISVLVDKCLMVILNNK---IMMHDL----------LQEMGREIVRQESIK- 261
+ ++ L L V K I + + + R IV +I
Sbjct: 399 VIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 262 --DPGKRSRLW----------HHEDIYNVLTNNTGTEAIEGIS---LDMS--KVKEIH-- 302
D + HH L N E + LD + K H
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHH------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 303 --LNA-GSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI 359
NA GS N L+ KFY + +N K + L + L +L L + SK
Sbjct: 512 TAWNASGSILNT--LQQLKFYKPYICDNDPK---YERLVNAILDFLPKIEENL--ICSKY 564
Query: 360 PPENLV--SLEMPHSSI-KQLWKGVQR 383
+L+ +L +I ++ K VQR
Sbjct: 565 --TDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 8e-13
Identities = 80/473 (16%), Positives = 156/473 (32%), Gaps = 107/473 (22%)
Query: 46 RLSRKKVLIVFDD-----------------VSTSEQMEFLIGNQGWLMQGSRLIITARDK 88
+ K +L VF+D + + E+++ +I ++ + RL T K
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 89 QVLKNCGVDTIYE--VKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAI 146
Q + + + V+E+ + + L S + P++ + + +
Sbjct: 75 Q-------EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 147 KV-LGRFLCGRRIKDWESTIKKIKRIPHVDIQ------K-VLKVSFDGLDDEEQNLFLDI 198
K + R +++ + +++ +V I K + + D + +D
Sbjct: 128 KYNVSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDF 182
Query: 199 ASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQE 258
F+ + S E + +L + N +R
Sbjct: 183 KIFW--------LNL--KNCNSPETVLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIH 228
Query: 259 SIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKL---- 314
SI+ + RL + N L + L + + NA F K+
Sbjct: 229 SIQA--ELRRLLKSKPYENCL-----------LVLLNVQNAKA-WNA--FNLSCKILLTT 272
Query: 315 RF---FKFYSSHYGENVNKVHNFRGLESTELRYL--QWHGCPLKSLSSKIPPENLVSLEM 369
RF F S+ +++ H+ L E++ L ++ C + L P E L +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPR 328
Query: 370 PHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLL-----E 423
S I + + G+ N KH+N + LT I + SL LE ++ L
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLN-VLEPAEYRKMFDRLSVFPPS 384
Query: 424 THSSIQYLNKL----------VVLNLKHCRSL-----TSLSTSIHLGSLKKLI 461
H L+ + VV+N H SL + SI L+ +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 106/659 (16%), Positives = 193/659 (29%), Gaps = 227/659 (34%)
Query: 244 HDLLQEMG------REIV---RQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLD 294
H + E G ++I+ + + D +V + + I L
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDN----------FDCKDVQ------DMPKSI-LS 47
Query: 295 MSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKS 354
++ I + + + F+ S E + V F E + Y ++ P+K+
Sbjct: 48 KEEIDHI-IMSKDAVSGTLRLFWTLLS--KQEEM--VQKFVE-EVLRINY-KFLMSPIKT 100
Query: 355 LSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLN 414
+ P +L+ Q K+ N+S + K L L L
Sbjct: 101 -EQRQPSMMTRMYI---EQRDRLYNDNQVFA--KY-NVSRLQPYLK-----LRQALLELR 148
Query: 415 FQ---------GC--TCL-LETHSSIQYLNKLVV----LNLKHCRSLTSLSTSIHLGSLK 458
G T + L+ S + K+ LNLK+C S ++ L L+
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-----LEMLQ 203
Query: 459 KLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILL-NLGNCLRLEGL-- 515
KL+ N S + S NI+ S L L+ NCL L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIK---------LRIHSIQAELRRLLKSKPYENCL----LVL 250
Query: 516 ----PSKI-------CKLKSLER-LNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFE 563
+K CK+ R + + L I++
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS--------------M 296
Query: 564 SFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623
+ E LLL + DC +LP ++ + + L S
Sbjct: 297 TLTPDEVKSLLL------------KYLDCRPQDLPR---EVLTTNPRRL----------S 331
Query: 624 IIQLSHLFSLGISH--------CERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQT 675
II + G++ C++L ++ IE SSL L + +
Sbjct: 332 II--AESIRDGLATWDNWKHVNCDKLTTI---------IE----SSLNVLE--PAEYRK- 373
Query: 676 SWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQLKATAWWEELEKQHCEVPRGMICFPGSE 735
F A L + W++ ++ ++ +
Sbjct: 374 -------MFDRLSVFPP--------SAHIPTILLSLIWFDVIK----SDVMVVVN----K 410
Query: 736 LPEWFMFQSMGSSATFNLPPDWFSYNFVGFALCAVVGFRDHHDDGGGFQVFCECKLKTED 795
L ++ + + +T ++P + + + KL+ E
Sbjct: 411 LHKYSLVEKQPKESTISIP--------------------SIYLE-------LKVKLENEY 443
Query: 796 GLCRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYMFSDGFDEYYYSDEVFIQFYLEDC 854
L R V H Y P+ SD + D+Y+YS I +L++
Sbjct: 444 ALHRSIVDH-------YNIPKTFDSDDLIP--------PYLDQYFYS---HIGHHLKNI 484
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 2e-26
Identities = 67/330 (20%), Positives = 112/330 (33%), Gaps = 49/330 (14%)
Query: 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLT 399
L L +L +P ++ +L +P +++ L L+ + +S + LT
Sbjct: 40 NGNAVLNVGESGLTTLPDCLPA-HITTLVIPDNNLTSL---PALPPELRTLEVSGN-QLT 94
Query: 400 KIPD-LSLATNLESLNFQGCTCLLETHSSIQYL-NKLVVLNLKHCRSLTSLSTSIHLGSL 457
+P L + + + L + L L + + LTSL L
Sbjct: 95 SLPVLPPGLLELSIFSNP--------LTHLPALPSGLCKLWIFGNQ-LTSLPVLP--PGL 143
Query: 458 KKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPS 517
++L +S L S P L + +L + P L L ++ + +L LP+
Sbjct: 144 QELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQEL---SVSDN-QLASLPT 198
Query: 518 KICKLKSLERLN--------LAEALKELKAEGIAIREVPSSIACLKNL--GRLSFESFMC 567
+L L N L LKEL G + +P + LK L S
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS--- 255
Query: 568 HEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQ- 626
LP+ + L L + + LPE L LSS + + LE N ++
Sbjct: 256 -------LPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306
Query: 627 --LSHLFSLG-ISHCERLHSLPELPCDLSD 653
+ +S I S P L
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHL 336
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 6e-08
Identities = 36/169 (21%), Positives = 55/169 (32%), Gaps = 32/169 (18%)
Query: 518 KICKLKSLERLNLAE------------ALKELKAEGIAIREVPSSIACLKNLGRLSFESF 565
+ C LN+ E + L + +P+ L+ L +S
Sbjct: 35 RACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTL-EVSGNQL 93
Query: 566 MCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESII 625
LP+ L L + + LP L L + N +P
Sbjct: 94 TS-------LPVLPP--GLLELSIFSNPLTHLPALPSGLCK---LWIFGNQLTSLPVLP- 140
Query: 626 QLSHLFSLGISHCERLHSLPELPCDLSDIEAHCC--SSL-EALSGLSIL 671
L L +S +L SLP LP +L + A+ +SL SGL L
Sbjct: 141 --PGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQEL 186
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-26
Identities = 42/335 (12%), Positives = 95/335 (28%), Gaps = 40/335 (11%)
Query: 354 SLSSKIPPE-----NLVSLEMPHSSIK-----QLWKGVQRLVNLKHINLSHSEHLTKIPD 403
S ++P L L + K KG+ ++ + + D
Sbjct: 92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151
Query: 404 ---LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKK 459
++L S + K + +T +S ++ L L++
Sbjct: 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQ 210
Query: 460 LILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI 519
+ + + E + + L L + + NC L LP+ +
Sbjct: 211 FYMGNSPFVAENICEAWENENSEYAQQ-YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269
Query: 520 CKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRL-----SFESFMCHEQMGL 573
L ++ +N+A + + + + + + + ++
Sbjct: 270 KALPEMQLINVACNRGISG-EQLKDDWQALADAPVGEKIQIIYIGYNNLKT--------F 320
Query: 574 LLPISFG-LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQ-LSHLF 631
+ S + L L + G + L L N IP + +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVE 380
Query: 632 SLGISHCERLHSLPELPCDLSDIEAHCCSSLEALS 666
+L +H +L +P +A S + A+
Sbjct: 381 NLSFAHN-KLKYIPN------IFDAKSVSVMSAID 408
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-26
Identities = 62/443 (13%), Positives = 139/443 (31%), Gaps = 83/443 (18%)
Query: 275 IYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFT-------NMHKLRFFKFYSSHYGEN 327
I + + ++ ++I+ S K +I + + T + KLR F +
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN------ 215
Query: 328 VNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPE-----NLVSLEMPH-SSIKQLWKGV 381
+ E+ E + + +L +E+ + ++ +L +
Sbjct: 216 -SPFVAENICEAWENENSE-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269
Query: 382 QRLVNLKHINLSH---------SEHLTKIPDLSLATNLESLNFQGCTCLLET---HSSIQ 429
+ L ++ IN++ + + D + ++ + L+T +S+Q
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN--NLKTFPVETSLQ 327
Query: 430 YLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE----LSCNIEELSLD 484
+ KL +L + + L + L L L+ + P + +E LS
Sbjct: 328 KMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFA 385
Query: 485 GTAIQEFPSSIE--RLSSLILLNLGN-------CLRLEGLPSKICKLKSLERLNLAE-AL 534
++ P+ + +S + ++ + L K ++ +NL+ +
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Query: 535 KELKAEGIAIREVPSSIACLKNLGRL-----SFESFMCHEQMGLLLPISFG-LTSLTYLR 588
+ + L + + +F LT +
Sbjct: 446 SKF---------PKELFSTGSPLSSINLMGNMLTEI--PKNSLKDENENFKNTYLLTSID 494
Query: 589 LTDCGIIELPE--CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHS--- 643
L + +L + L + L N+F + P + S L GI +
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554
Query: 644 LPELPCDLSDIEAHCCSSLEALS 666
L E P ++ C SL L
Sbjct: 555 LREWPEGITL-----CPSLTQLQ 572
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 4e-21
Identities = 36/300 (12%), Positives = 87/300 (29%), Gaps = 32/300 (10%)
Query: 378 WKGVQ--RLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG----CTCLLETHSSIQY 430
GV + ++L ++PD + T LE L L I
Sbjct: 72 QPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISA 131
Query: 431 LNKLVVLNLKHCRSLTSLSTSI---HLGSLKKLILSGCSNLMSFPE---LSCNIEELSLD 484
+ L K ++ S + ++ ++
Sbjct: 132 NMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL 191
Query: 485 GTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEA-------LKEL 537
I ++ RL+ L +GN + + + ++ E + LK+L
Sbjct: 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251
Query: 538 KAEGIA----IREVPSSIACLKNLGRLS-----FESFMCHEQMGLLLPISFGLTSLTYLR 588
+ + ++P+ + L + ++ S + L + + +
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 589 LTDCGI--IELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE 646
+ + + L ++ +L N E + L SL +++ ++ +P
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPA 370
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 36/248 (14%), Positives = 79/248 (31%), Gaps = 61/248 (24%)
Query: 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEM-----------PHSSIKQLWKGVQRLVNL 387
+ ++ L + LK + + +++ + + L + +N+
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 388 KHINLSHSEHLTKIPD--LSLATNLESLNFQGC-------TCLLETHSSIQYLNKLVVLN 438
INLS++ ++K P S + L S+N G L + + + + L ++
Sbjct: 436 SSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494
Query: 439 LKHCRSLTSLSTSIHLG---SLKKLILSGCSNLMSFPE------------------LSCN 477
L+ + LT LS L + LS + FP N
Sbjct: 495 LRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552
Query: 478 ---------------IEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKL 522
+ +L + I++ I ++ +L++ + + S +C
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPY 610
Query: 523 KSLERLNL 530
L
Sbjct: 611 IEAGMYML 618
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 8/132 (6%)
Query: 572 GLLLPISFG-LTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFERIPESII--QL 627
G +S +T L L G +P+ +GQL+ +L L + + +
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 628 SHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNC 687
S S R+H + S L S ++ S +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPRED---FSDLIKDCINSDPQQKSIKKSSRITLKDT 186
Query: 688 -FKLDKNELKEI 698
N + +
Sbjct: 187 QIGQLSNNITFV 198
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 9e-25
Identities = 60/314 (19%), Positives = 128/314 (40%), Gaps = 30/314 (9%)
Query: 329 NKVHNFRGLES-TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387
KV + +G+E T L YL +G + +S L +L + + I + +Q L NL
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-SALQNLTNL 112
Query: 388 KHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTS 447
+ + L+ +++ I L+ T + SLN L S + + L L + + +
Sbjct: 113 RELYLNED-NISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESK-VKD 169
Query: 448 LSTSIHLGSLKKLILSGC--SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLN 505
++ +L L L L+ ++ L+ ++ + I + + ++ L L
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDISPLASLT-SLHYFTAYVNQITDITP-VANMTRLNSLK 227
Query: 506 LGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFES 564
+GN ++ L + L L L + + ++ +++ L L L+
Sbjct: 228 IGNN-KITDLSP-LANLSQLTWLEIGTNQISDI-----------NAVKDLTKLKMLN--- 271
Query: 565 FMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPES 623
+ Q+ + ++ L+ L L L + + E +G L++ + L L +N+ I
Sbjct: 272 -VGSNQISDISVLN-NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328
Query: 624 IIQLSHLFSLGISH 637
+ LS + S ++
Sbjct: 329 LASLSKMDSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 60/356 (16%), Positives = 127/356 (35%), Gaps = 44/356 (12%)
Query: 275 IYNVLTNNTGTEAIEGISLDMSKVKEIHLNA------GSFTNMHKLRFFKFYSSHYGENV 328
I VL + T+ + ++ + ++ + + L +
Sbjct: 25 IRAVLQKASVTD-VVTQE-ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNG------- 75
Query: 329 NKVHNFRGLES-TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387
N++ + L + +L L + +S+ NL L + +I + + L +
Sbjct: 76 NQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLANLTKM 134
Query: 388 KHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTS 447
+NL + +L+ + LS T L L ++ + I L L L+L + + +
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--VKDVTPIANLTDLYSLSLNYNQ-IED 191
Query: 448 LSTSIHLGSLKKLILSGC--SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLN 505
+S L SL +++ ++ + L + I + + LS L L
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITPVANMT-RLNSLKIGNNKITDLS-PLANLSQLTWLE 249
Query: 506 LGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFES 564
+G ++ + + + L L+ LN+ + ++ S + L L L
Sbjct: 250 IGTN-QISDINA-VKDLTKLKMLNVGSNQISDI-----------SVLNNLSQLNSLF--- 293
Query: 565 FMCHEQMGLLLPISFG-LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFER 619
+ + Q+G G LT+LT L L+ I ++ L LS ++
Sbjct: 294 -LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 5e-13
Identities = 38/214 (17%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 444 SLTSLSTSI-------HLGSLKKLILSGC--SNLMSFPELSCNIEELSLDGTAIQEFPSS 494
+L +L I L + +L +++++ EL +I +L + G +
Sbjct: 4 TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELE-SITKLVVAGEKVASIQG- 61
Query: 495 IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIAC 553
IE L++L LNL ++ + + L L L + + ++ S++
Sbjct: 62 IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDI-----------SALQN 108
Query: 554 LKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLE 613
L NL L + + + P++ LT + L L + L ++ + L +
Sbjct: 109 LTNLRELYLN----EDNISDISPLA-NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163
Query: 614 KNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647
++ + + I L+ L+SL +++ ++ + L
Sbjct: 164 ESKVKDVTP-IANLTDLYSLSLNYN-QIEDISPL 195
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-23
Identities = 73/409 (17%), Positives = 140/409 (34%), Gaps = 44/409 (10%)
Query: 291 ISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGC 350
++ ++ + + + L F + F GL + +
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTF--EDMDDEDISPAVFEGLCEMSVESINLQKH 264
Query: 351 PLKSLSSKI--PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLA- 407
++SS L L++ + + +L G+ L LK + LS + + +S +
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASN 323
Query: 408 -TNLESLNFQGCTCLLETHS-SIQYLNKLVVLNLKHCRSLTSLSTSIH----LGSLKKLI 461
+L L+ +G T LE + ++ L L L+L H + + L L+ L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLN 382
Query: 462 LSGCSNLMSFPELSC----NIEELSLDGTAIQEF--PSSIERLSSLILLNLGNCLRLEGL 515
LS +S + +E L L T ++ S + L L +LNL + L+
Sbjct: 383 LSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDIS 440
Query: 516 PSKICK-LKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGL 573
++ L +L+ LNL + + +S+ L L L +
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKG------NIQKTNSLQTLGRLEILVLS----FCDLSS 490
Query: 574 LLPISF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQ-LSHLF 631
+ +F L + ++ L+ + L L N+ I S++ LS
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR 550
Query: 632 SLGISH------CE---RLHSLPELPCDLSDIEAHCCSSLEALSGLSIL 671
++ + C L E L D E C + L G+ +
Sbjct: 551 TINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLS 599
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 1e-19
Identities = 55/330 (16%), Positives = 106/330 (32%), Gaps = 37/330 (11%)
Query: 348 HGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSL 406
L + +P + LE + + + RL+NL ++L+ + I + +
Sbjct: 20 ENLGLNEIPGTLPN-STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTF 77
Query: 407 A--TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLIL 462
L++L + +++ L L ++S+ + +L+ L L
Sbjct: 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYL 136
Query: 463 SGCS----NLMSFPELSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLG-NCLRLEGLP 516
L ++ L AI + L L+L N + G+
Sbjct: 137 GSNHISSIKLPKGFPTE-KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195
Query: 517 SKICKLKSLERLNLA-----------------EALKELKAEGIAIREVPSSIACLKNLGR 559
+ LN ++L E + ++ ++ + L
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV--FEGLCE 253
Query: 560 LSFESFMCHE-QMGLLLPISF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNF 617
+S ES + + +F + L L LT + ELP L LS+ L+L N F
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF 313
Query: 618 ERIPESIIQ-LSHLFSLGISHCERLHSLPE 646
E + + L L I + L
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGT 343
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 9e-19
Identities = 70/404 (17%), Positives = 119/404 (29%), Gaps = 68/404 (16%)
Query: 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCP 351
SL + + KL+ F + + + L+ L +G
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDF--QNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 352 LKSLSSKI---------------------------PPENLVSLEMPHSSIKQLWKGV--- 381
+ + ++L + + V
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 382 QRLVNLKHINLSHSEHLTKIPDLSLA--TNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439
++++ INL + I + + L+ L+ L E S + L+ L L L
Sbjct: 251 LCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVL 308
Query: 440 KHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSC----NIEELSLDG---TAIQE 490
+ +L + SL L + G + + N+ EL L
Sbjct: 309 SANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367
Query: 491 FPSSIERLSSLILLNLGNCLRLEGLPSKICK-LKSLERLNLAE-ALKELKAEGIAIREVP 548
+ LS L LNL L ++ K LE L+LA LK +
Sbjct: 368 CNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVK--------DAQ 418
Query: 549 SSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIEL----PECLGQ 603
S L L L+ H + + F GL +L +L L + L
Sbjct: 419 SPFQNLHLLKVLNLS----HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474
Query: 604 LSSRSILLLEKNNFERIPESIIQ-LSHLFSLGISHCERLHSLPE 646
L IL+L + I + L + + +SH RL S
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSI 517
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 43/225 (19%), Positives = 67/225 (29%), Gaps = 27/225 (12%)
Query: 444 SLTSLSTSIHLGSLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEF-PSSIERLSSL 501
+ +S I K L P L + E L + ++ RL +L
Sbjct: 1 TTSSDQKCIEKEVNKTYNCENL-GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINL 59
Query: 502 ILLNLGNCLRLEGLPSK-ICKLKSLERLNLA---------------EALKELKAEGIAIR 545
L+L C ++ + L+ L L +ALK L I
Sbjct: 60 TFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 546 EV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQ 603
+ + K L L S H + LP F L L + I L E +
Sbjct: 119 SIDFIPLHNQKTLESLYLGS--NHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175
Query: 604 LSSRSI--LLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE 646
L + L L N+ I + SL + L + +
Sbjct: 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 8e-23
Identities = 46/299 (15%), Positives = 86/299 (28%), Gaps = 61/299 (20%)
Query: 357 SKIPPE------NLVSLEMPHSSIKQLWKGVQ--RLVNLKHINLSHSEHLTKIPDLSLAT 408
S + +P + + ++ + + L+ +L+ +PD +L
Sbjct: 23 SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL-NLSSLPD-NLPP 80
Query: 409 NLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCS 466
+ L L E L L+ R L++L SLK L +
Sbjct: 81 QITVLEITQNALISLPEL------PASLEYLDACDNR-LSTLPELP--ASLKHLDVDNN- 130
Query: 467 NLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLE 526
L PEL +E ++ D + P L L + N +L LP +SLE
Sbjct: 131 QLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRN----NQLTFLPE---LPESLE 183
Query: 527 RLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTY 586
L+++ L + +P+ + + +
Sbjct: 184 ALDVSTNL---------LESLPAVPVRNHHS-----------------------EETEIF 211
Query: 587 LRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645
R + I +PE + L ++LE N +
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 45/333 (13%), Positives = 92/333 (27%), Gaps = 44/333 (13%)
Query: 382 QRLVNLKHINLSHSEHLTKIPDLSLA--TNLESLNFQGCTCLLET--HSSIQYLNKLVVL 437
Q K ++ S L + N++ L+ G L + + KL +L
Sbjct: 7 QNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN--PLSQISAADLAPFTKLELL 63
Query: 438 NLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIER 497
NL L L +L+ L L+ + +IE L I S
Sbjct: 64 NLSSNV-LYETLDLESLSTLRTLDLNNN-YVQELLVGP-SIETLHAANNNISRVSCSR-- 118
Query: 498 LSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLK 555
+ L N ++ L ++ L+L + + A
Sbjct: 119 GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSD 169
Query: 556 NLGRLSFESFMCHEQMGLL-------LPISFGLTSLTYLRLTDCGIIELPECLGQLSSRS 608
L L+ L + L L L+ + + + +
Sbjct: 170 TLEHLN------------LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT 217
Query: 609 ILLLEKNNFERIPESIIQLSHLFSLGISHCE-RLHSLPELPCDLSDIEAHCCSSLEALSG 667
+ L N I +++ +L + +L + ++ +++ L+G
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277
Query: 668 LSILFTQTSWNSQFFYFVNCFKLDKNELKEIIK 700
+ + + C L +I
Sbjct: 278 QNEEECTVPTLGHYGAYC-CEDLPAPFADRLIA 309
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 9/156 (5%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPP 361
L ++++ + + VN ++ L +L + + ++
Sbjct: 134 MLRDLDEGCRSRVQYLDL-KLNEIDTVNFAELAASSDT--LEHLNLQYNFIYDVKGQVVF 190
Query: 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG--- 417
L +L++ + + + Q + I+L ++ L I L + NLE + +G
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249
Query: 418 -CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI 452
C L + S Q + + +K ++
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 2e-21
Identities = 41/358 (11%), Positives = 107/358 (29%), Gaps = 46/358 (12%)
Query: 332 HNFRGLESTELRYLQWHGCPLKSLSSKIPP--ENLVSLEMPHSSIKQLWKGV-QRLVNLK 388
F + + + + ++ L + + + L + I+++ ++
Sbjct: 43 FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102
Query: 389 HINLSHSEHLTKIPDLSLA--TNLESLNFQGCTCLLET--HSSIQYLNKLVVLNLKHCRS 444
+ + + + +P L L + L + KL L++ +
Sbjct: 103 KLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTLSMSNNN- 158
Query: 445 LTSLSTSI--HLGSLKKLILSGCSNLMSFPELS-CNIEELSLDGTAIQEFPSSIERLSSL 501
L + SL+ L LS L ++ ++ + ++
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAI----PIAV 213
Query: 502 ILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLS 561
L+ + + + + L L L + + + L +
Sbjct: 214 EELDASHN-SINVVRGPVNV--ELTILKLQ---------HNNLTDTAW-LLNYPGLVEVD 260
Query: 562 FESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERI 620
+ ++ ++ F + L L +++ ++ L + + +L L N+ +
Sbjct: 261 LS----YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV 316
Query: 621 PESIIQLSHLFSLGISHC-------ERLHSLPELPCDLSDIEAHCCSSLEALSGLSIL 671
+ Q L +L + H H+L L LS + C S ++
Sbjct: 317 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL--TLSHNDWDCNSLRALFRNVARP 372
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 3e-21
Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 30/228 (13%)
Query: 50 KKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDT--IYEVKELFD 107
+ L++ DDV S ++ ++++T RDK V + + L
Sbjct: 236 PRSLLILDDVWDSWVLK-------AFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGK 288
Query: 108 DDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKK 167
+ + S + K + E ++ IIK KG PL + ++G L WE +K+
Sbjct: 289 EKGLEILSLFVNMKK-AD--LPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344
Query: 168 IKR-----------IPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFL 214
++ + + + + +S + L ++ ++ + D++ K +
Sbjct: 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW 404
Query: 215 DGCGFSAEIGISVLVDKCL-MVILNNKIM---MHDLLQEMGREIVRQE 258
D E + V+K L N K +HDL + E +
Sbjct: 405 DMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQ 452
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-21
Identities = 56/369 (15%), Positives = 125/369 (33%), Gaps = 55/369 (14%)
Query: 352 LKSLSSKIPPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSLA--T 408
+ I N + +S++++L + ++ +NL+ + +I + A
Sbjct: 35 VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAH 93
Query: 409 NLESLNFQGCTCLLET--HSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSG 464
++ L + Q + L VL L+ L+SL I + L L +S
Sbjct: 94 TIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSN 150
Query: 465 CSNLMSFPELS----CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKIC 520
NL + + +++ L L + S+ + SL N+ L L
Sbjct: 151 N-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYN-LLSTLA---- 202
Query: 521 KLKSLERLNLAE------------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCH 568
++E L+ + L LK + + + + L + + +
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVD----LSY 257
Query: 569 EQMGLLLPISF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQL 627
++ ++ F + L L +++ ++ L + + +L L N+ + + Q
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317
Query: 628 SHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNC 687
L +L + H + +L S+ L L++ NS F N
Sbjct: 318 DRLENLYLDHN-SIVTLKL-------------STHHTLKNLTLSHNDWDCNSLRALFRNV 363
Query: 688 FKLDKNELK 696
+ ++
Sbjct: 364 ARPAVDDAD 372
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 52/305 (17%), Positives = 96/305 (31%), Gaps = 55/305 (18%)
Query: 417 GCTCLLETHSSIQYLNKLVVLNLKH-CRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELS 475
C+ S++QY +++ + + I L + K + + P
Sbjct: 9 EYKCID---SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAAL 64
Query: 476 ----CNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKI-CKLKSLERLN 529
+E L+L+ I+E + ++ L +G + LP + + L L
Sbjct: 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLV 123
Query: 530 LAEALKELKAEGIAIREVPSSI-ACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYL 587
L + +P I L LS M + + + +F TSL L
Sbjct: 124 LERN---------DLSSLPRGIFHNTPKLTTLS----MSNNNLERIEDDTFQATTSLQNL 170
Query: 588 RLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647
+L+ + + L + S + N + + L SH
Sbjct: 171 QLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNS-------- 216
Query: 648 PCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKL-----DKNELKEIIKDA 702
++ + L L T T+W +N L NEL++I+
Sbjct: 217 ---INVVRGPVNVELTILKLQHNNLTDTAW------LLNYPGLVEVDLSYNELEKIMYHP 267
Query: 703 QRKMQ 707
KMQ
Sbjct: 268 FVKMQ 272
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 3e-20
Identities = 40/298 (13%), Positives = 87/298 (29%), Gaps = 29/298 (9%)
Query: 384 LVNLKHINLSHSEHLTKIPDLSLA--TNLESLNFQGCTCLLET--HSSIQYLNKLVVLNL 439
K ++ S L + N++ L+ G L + + KL +LNL
Sbjct: 9 GNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN--PLSQISAADLAPFTKLELLNL 65
Query: 440 KHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499
L L +L+ L L+ + +IE L I S
Sbjct: 66 SSNV-LYETLDLESLSTLRTLDLNNN-YVQELLVGP-SIETLHAANNNISRVSCSR--GQ 120
Query: 500 SLILLNLGNCLRLEGLPSK-ICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNL 557
+ L N ++ L ++ L+L + + A L
Sbjct: 121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTL 171
Query: 558 GRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNF 617
L+ + + + + L L L+ + + + + + L N
Sbjct: 172 EHLN----LQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226
Query: 618 ERIPESIIQLSHLFSLGISHCE-RLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQ 674
I +++ +L + +L + ++ +++ L+G +
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 5e-20
Identities = 53/411 (12%), Positives = 122/411 (29%), Gaps = 61/411 (14%)
Query: 279 LTNNTGTEAIEGISLDMSKVKEIHLN--------AGSFTNMHKLRFFKFYSSHYGENVNK 330
+T+++ +A+ + VKE+ L+ A KL S N
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-------NV 69
Query: 331 ---VHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387
+ L + LR L + ++ L ++ +L +++I ++
Sbjct: 70 LYETLDLESL--STLRTLDLNNNYVQELL---VGPSIETLHAANNNISRVSCSR--GQGK 122
Query: 388 KHINLSHSEHLTKIPDLSLA--TNLESLNFQGCT-CLLETHSSIQYLNKLVVLNLKHCRS 444
K+I L+++ +T + DL + ++ L+ + + + L LNL++
Sbjct: 123 KNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180
Query: 445 LTSLSTSIHLGSLKKLILSGCSNLMSFPE----LSCNIEELSLDGTAIQEFPSSIERLSS 500
+ + + LK L LS L + + +SL + ++ +
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQN 238
Query: 501 LILLNL-GNCLRLEGLPSKICKLKSLERLNLA-------------EALKELKAEGIAIRE 546
L +L GN L K + ++ + +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298
Query: 547 VPSSIACLKNLGRLSFES----FMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP-ECL 601
+P+ L L + + L + + +
Sbjct: 299 LPAPF--ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356
Query: 602 GQLSSRSILLLEKNNFERIP----ESIIQLSHLFSLGISHCERLHSLPELP 648
+ ++ L +K + + +L + E H+ E
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 8e-20
Identities = 80/440 (18%), Positives = 144/440 (32%), Gaps = 68/440 (15%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHN--FRGLESTELRYLQWHGCPLKSLSSKI 359
L A +FT +L + ++K+ + L L+ L L LS K
Sbjct: 39 RLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKL--PMLKVLNLQHNELSQLSDKT 92
Query: 360 --PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSLA--TNLESLN 414
NL L + +SI+++ + NL ++LSH+ L+ + NL+ L
Sbjct: 93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELL 151
Query: 415 FQGC--TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMS 470
L I + L L L + + S +G L L L+ S
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPS 210
Query: 471 FPELSC------NIEELSLDGTAIQEFPSSI---ERLSSLILLNLGNCLRLEGLPSK-IC 520
E C +I LSL + + ++ + ++L +L+L L + +
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFA 269
Query: 521 KLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLS-----FESFMCHEQMGLL 574
L LE L ++ L S+ L N+ L+ + + + +
Sbjct: 270 WLPQLEYFFLEYNNIQHL---------FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 575 LPISF-GLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPESIIQLSHLFS 632
SF L L +L + D I + L + L L + + L
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380
Query: 633 LGISHCERLHSLPELPCDLSD-----IEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNC 687
LH L +L+ IE+ S L L L + + +
Sbjct: 381 S------PLHIL-----NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429
Query: 688 -----FKLDKNELKEIIKDA 702
L N+ ++ +++
Sbjct: 430 ENIFEIYLSYNKYLQLTRNS 449
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 9e-20
Identities = 72/394 (18%), Positives = 143/394 (36%), Gaps = 54/394 (13%)
Query: 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCP 351
L++S + + G F + +L + G ++ + L +T +R L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE-KLCLELANTSIRNLSLSNSQ 233
Query: 352 LKSLSSKI----PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHS----------E 396
L + S+ NL L++ ++++ + L L++ L ++
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293
Query: 397 HLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HL 454
L + L+L + + + S Q+L L LN++ + + +++ L
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGL 352
Query: 455 GSLKKLILSGCSNLMSFPELS---------CNIEELSLDGTAIQEF-PSSIERLSSLILL 504
+LK L LS + S L+ + L+L I + + L L +L
Sbjct: 353 INLKYLSLSN--SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 505 NL-GNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSF 562
+L N + E + L+++ + L+ +L +S A + +L RL
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL---------TRNSFALVPSLQRLML 461
Query: 563 ESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIP 621
+ + + L +LT L L++ I + + L L IL L+ NN R+
Sbjct: 462 -RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520
Query: 622 ESIIQ---------LSHLFSLGISHCERLHSLPE 646
+ LSHL L + +P
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 7e-19
Identities = 70/413 (16%), Positives = 143/413 (34%), Gaps = 58/413 (14%)
Query: 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCP 351
+ HL + S + +R+ S ++++ + ++ ++L+
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLK----- 329
Query: 352 LKSLSSKIPPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSE-HLTKIPDLSLA-- 407
L L M + I + + L+NLK+++LS+S L + + +
Sbjct: 330 -----------CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378
Query: 408 --TNLESLNFQGCTCLLETHS-SIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLIL 462
+ L LN + + S + +L L VL+L L+ L ++ ++ L
Sbjct: 379 AHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 463 SGCS----NLMSFPELSCNIEELSLDG---TAIQEFPSSIERLSSLILLNLGNCLRLEGL 515
S SF + +++ L L + PS + L +L +L+L N + +
Sbjct: 438 SYNKYLQLTRNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANI 495
Query: 516 PSK-ICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGL 573
+ L+ LE L+L L L + L +L L+ +
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANP-GGPIYFLKGLSHLHILN----LESNGFDE 550
Query: 574 LLPISF-GLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPESIIQ--LSH 629
+ F L L + L + L S L L+KN + + + +
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN 610
Query: 630 LFSLGISH------CERLHSLP----ELPCDLSDIEAHC-CSSLEALSGLSIL 671
L L + CE + E ++ ++ +H C++ G +
Sbjct: 611 LTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVR 663
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-12
Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 21/184 (11%)
Query: 456 SLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLE 513
S + S L P +L NI L+L ++ ++ R S L L++G +
Sbjct: 5 SHEVADCSHL-KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TIS 62
Query: 514 GLPSK-ICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM 571
L + KL L+ LNL L +L + A NL L + +
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLS---------DKTFAFCTNLTELH----LMSNSI 109
Query: 572 GLLLPISF-GLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPESIIQLSH 629
+ F +L L L+ G+ QL + LLL N + + + +
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169
Query: 630 LFSL 633
SL
Sbjct: 170 NSSL 173
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 27/197 (13%)
Query: 475 SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNLAE- 532
+ + E + + P + +++ +LNL + +L LP+ + L L++
Sbjct: 3 TVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFN 59
Query: 533 ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTD 591
+ +L+ P L L L+ + H ++ L +F T+LT L L
Sbjct: 60 TISKLE---------PELCQKLPMLKVLNLQ----HNELSQLSDKTFAFCTNLTELHLMS 106
Query: 592 CGIIEL-PECLGQLSSRSILLLEKNNFERIPESII-QLSHLFSLGISHCERLHSLPELPC 649
I ++ + + L L N QL +L L +S+ ++ +L
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKS--- 162
Query: 650 DLSDIEAHCCSSLEALS 666
+++ SSL+ L
Sbjct: 163 --EELDIFANSSLKKLE 177
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 8e-20
Identities = 82/454 (18%), Positives = 159/454 (35%), Gaps = 72/454 (15%)
Query: 292 SLDMSKVKEIHLNAGSFTN-MHKLRFFKFYSSHYGENVNKVHN---------FRGLESTE 341
LD+S G+F+N + K + F +H+ + F GL +
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267
Query: 342 LRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHL 398
+R+L + SL+S++ ++L L + ++ I ++ L NL+ +NLS++ L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LL 326
Query: 399 TKIPDLSLA--TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGS 456
++ + + ++ Q + + ++L KL L+L+ L+T + S
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA----LTTIHFIPS 382
Query: 457 LKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP--SSIERLSSLILLNL-GNCLRLE 513
+ + LSG L++ P+++ + L ++ + R+ L +L L N
Sbjct: 383 IPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 514 GLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMG 572
+ SLE+L L E L+ + L +L L H +
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELC----WDVFEGLSHLQVLYLN----HNYLN 493
Query: 573 LLLPISF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLF 631
L P F LT+L L L + L ++ IL + +N + +
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVL 552
Query: 632 SLG----ISHCE---------------------------------RLHSLPELPCDLSDI 654
+ I CE L SL CD ++
Sbjct: 553 DITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV 612
Query: 655 EAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCF 688
SL + +++ + + + CF
Sbjct: 613 LKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCF 646
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 2e-14
Identities = 62/378 (16%), Positives = 124/378 (32%), Gaps = 43/378 (11%)
Query: 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCP 351
L +S + A SF + +L+ + S + ++K FR L LR L
Sbjct: 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK-EAFRNL--PNLRILDLGSSK 84
Query: 352 LKSLSSKI--PPENLVSLEMPHSSIKQLW---KGVQRLVNLKHINLSHSE--HLTKIPDL 404
+ L +L L + + + L L ++LS ++ L P
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 405 SLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCR-------SLTSLSTSIHLG 455
+L+S++F + E L +L
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 456 SLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGL 515
L+ L +SG + N ++ + S+ ++ G ++
Sbjct: 205 VLEILDVSGNGWTVDITGNFSN----AISKSQAF----SLILAHHIMGAGFGFH-NIKDP 255
Query: 516 PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGRLSFESFMCHEQMGLL 574
L R + ++ L + + S + LK+L L+ + ++ +
Sbjct: 256 DQNT--FAGLARSS----VRHLDLSHGFVFSLNSRVFETLKDLKVLNLA----YNKINKI 305
Query: 575 LPISF-GLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESIIQ-LSHLF 631
+F GL +L L L+ + EL L + + L+KN+ I + + L L
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Query: 632 SLGISHCERLHSLPELPC 649
+L + L ++ +P
Sbjct: 366 TLDLRDN-ALTTIHFIPS 382
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 3e-12
Identities = 67/409 (16%), Positives = 132/409 (32%), Gaps = 59/409 (14%)
Query: 293 LDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPL 352
LD+ K L+ +F + L + Y + V K FR L++ L L +
Sbjct: 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA--LTRLDLSKNQI 135
Query: 353 KSLSSKIPPENLVSLE-----------MPHSSIKQLWKGVQRLVNLKHINLSHSEHLT-- 399
+SL L SL+ + ++ L +L +L +
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195
Query: 400 KIPDLSLATNLESLNFQGCTC-LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIH-LGSL 457
K + LE L+ G + T + ++K +L + H +
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255
Query: 458 KKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLP 516
+ +G + ++ L L + S + E L L +LNL ++ +
Sbjct: 256 DQNTFAGLARS--------SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIA 306
Query: 517 SKI-CKLKSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGRLSFESFMCHEQMGLL 574
+ L +L+ LNL + E+ SS L + + + + ++
Sbjct: 307 DEAFYGLDNLQVLNL---------SYNLLGELYSSNFYGLPKVAYIDLQ----KNHIAII 353
Query: 575 LPISF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLF-- 631
+F L L L L D + + + S + L N +P+ + + +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409
Query: 632 SLGISHCERLHSLPELP---------CDLSDIEAHC-CSSLEALSGLSI 670
+ + + L+ L +P S S +L L +
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 7e-12
Identities = 59/363 (16%), Positives = 106/363 (29%), Gaps = 47/363 (12%)
Query: 350 CPLKSLSSKIPPE--NLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSL 406
+L+ +P L + + I+ + L L+ + L I +
Sbjct: 11 YRFCNLTQ-VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 407 A--TNLESLNFQGCTCLLETHSSI-QYLNKLVVLNLKHCR-SLTSLSTSI--HLGSLKKL 460
NL L+ + H Q L L L L C S L +L +L +L
Sbjct: 70 RNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128
Query: 461 ILSGCSNLMSFPELSC-----NIEELSLDGTAIQEFPSSI---ERLSSLILLNLGNCLRL 512
LS + S +++ + I + +L +L L
Sbjct: 129 DLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN-SL 186
Query: 513 EGLPSKIC-------KLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESF 565
S + LE L+++ + G + S A L +
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246
Query: 566 MCHEQMGLLLPISFG---LTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIP 621
+ +F +S+ +L L+ + L L +L L N +I
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 622 ESIIQ-LSHLFSLGISHC----------ERLHSLPELPCDLSD--IEAHCCSSLEALSGL 668
+ L +L L +S+ L + + DL I + + L L
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI--DLQKNHIAIIQDQTFKFLEKL 364
Query: 669 SIL 671
L
Sbjct: 365 QTL 367
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 56/276 (20%), Positives = 109/276 (39%), Gaps = 32/276 (11%)
Query: 351 PLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNL 410
P +L N + + S++ L + ++ + +T I + NL
Sbjct: 14 PDPAL------ANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTG-VTTIEGVQYLNNL 65
Query: 411 ESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC--SNL 468
L + + + ++ L K+ L L L ++S L S+K L L+ +++
Sbjct: 66 IGLELKDN--QITDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDV 122
Query: 469 MSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERL 528
LS N++ L LD I S + L++L L++GN ++ L L L
Sbjct: 123 TPLAGLS-NLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNA--------QVSDLTPLANL 172
Query: 529 NLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLR 588
+ L LKA+ I ++ S +A L NL + + + Q+ + P++ ++L +
Sbjct: 173 S---KLTTLKADDNKISDI-SPLASLPNLIEVHLK----NNQISDVSPLA-NTSNLFIVT 223
Query: 589 LTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624
LT+ I P ++ + P +I
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATI 259
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 43/222 (19%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 288 IEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLES-TELRYLQ 346
I +S + V I ++ L + N++ + L++ T++ L+
Sbjct: 43 ITTLSAFGTGVTTIE----GVQYLNNLIGLELKD-------NQITDLAPLKNLTKITELE 91
Query: 347 WHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSL 406
G PLK++S+ +++ +L++ + I + + L NL+ + L ++ +T I L+
Sbjct: 92 LSGNPLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQ-ITNISPLAG 149
Query: 407 ATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC- 465
TNL+ L+ + + + L+KL L + ++ +S L +L ++ L
Sbjct: 150 LTNLQYLSIGN--AQVSDLTPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQ 206
Query: 466 -SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNL 506
S++ S N+ ++L I P + ++L++ N+
Sbjct: 207 ISDVSPLANTS-NLFIVTLTNQTITNQP--VFYNNNLVVPNV 245
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 4e-19
Identities = 64/383 (16%), Positives = 117/383 (30%), Gaps = 47/383 (12%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPP 361
+ + +F ++ + + + F L + + G +K L
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL--ANVSAMSLAGVSIKYLEDVPKH 306
Query: 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC--T 419
SL + +KQ L LK + L+ + + +L L+ +
Sbjct: 307 FKWQSLSIIRCQLKQF--PTLDLPFLKSLTLTMN-KGSISFKKVALPSLSYLDLSRNALS 363
Query: 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSC-- 476
S N L L+L +S + L L+ L S L E S
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQH-STLKRVTEFSAFL 421
Query: 477 ---NIEELSLDGTAIQEFPSSI-ERLSSLILLNL-GNCLRLEGLPSKICKLKSLERLNLA 531
+ L + T + I L+SL L + GN + L + +L L+L+
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481
Query: 532 E-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRL 589
+ L+++ L L L M H + L + L SL+ L
Sbjct: 482 KCQLEQIS---------WGVFDTLHRLQLL----NMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 590 TDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELP 648
+ I S + L N+ I + L + E
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSV----ACICEHQKF----------LQWVKEQK 574
Query: 649 CDLSDIEAHCCSSLEALSGLSIL 671
L ++E C++ ++ +L
Sbjct: 575 QFLVNVEQMTCATPVEMNTSLVL 597
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-18
Identities = 68/377 (18%), Positives = 118/377 (31%), Gaps = 69/377 (18%)
Query: 292 SLDMS--KVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKV----HNFRGLESTELRYL 345
SLDMS + I A +H+L + N + N GL L
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTL-----RGNFNSSNIMKTCLQNLAGLHVHRLILG 239
Query: 346 QWHGCPLKSLSSKIPPENLVSLEMPH---SSIKQLWKGV---QRLVNLKHINLSHSEHLT 399
++ + E L + + + + L N+ ++L+ +
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIK 298
Query: 400 KIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKK 459
+ D+ +SL+ C L+ ++ L L L L + + + L SL
Sbjct: 299 YLEDVPKHFKWQSLSIIRC--QLKQFPTLD-LPFLKSLTLTMNK-GSISFKKVALPSLSY 354
Query: 460 LILSGC--SNLM--SFPELSC-NIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG 514
L LS S S+ +L ++ L L ++ L L L+ + L+
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKR 413
Query: 515 LP--SKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMG 572
+ S L+ L L+++ N F
Sbjct: 414 VTEFSAFLSLEKLLYLDISY----------------------TNTKIDFDGIF------- 444
Query: 573 LLLPISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERIPESIIQ-LSH 629
GLTSL L++ + L ++ + L L K E+I + L
Sbjct: 445 ------LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 630 LFSLGISHCERLHSLPE 646
L L +SH L L
Sbjct: 499 LQLLNMSHN-NLLFLDS 514
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-17
Identities = 66/414 (15%), Positives = 126/414 (30%), Gaps = 52/414 (12%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-- 359
L + + L+ + + F L T L ++ +++++
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFI-HSCKLPAYFSNL--TNLVHVDLSYNYIQTITVNDLQ 174
Query: 360 ----PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNF 415
P+ +SL+M + I + + + L + L + + + I L N
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL------QNL 228
Query: 416 QGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELS 475
G + L + L ++ S +++ F L+
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI-DEFRLTYTNDFS--DDIVKFHCLA 285
Query: 476 CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALK 535
N+ +SL G +I+ + + L++ C +L+ P+ L L+ L L
Sbjct: 286 -NVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTMNKG 340
Query: 536 ELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII 595
+ L +L L S G G SL +L L+ G I
Sbjct: 341 SI----------SFKKVALPSLSYLDL-SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 596 ELPECLGQLSSRSILLLEKNNFERIPESII--QLSHLFSLGISHCERLHSLPELPCDLSD 653
+ L L + + +R+ E L L L IS+
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-----------TKI 438
Query: 654 IEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKL-----DKNELKEIIKDA 702
L +L+ L + N+ F N L K +L++I
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 3e-17
Identities = 50/304 (16%), Positives = 100/304 (32%), Gaps = 34/304 (11%)
Query: 357 SKIPPE------NLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSLA-- 407
+ L L++ I+ + L +L ++ L+ + + S +
Sbjct: 45 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGL 103
Query: 408 TNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCR--SLTSLSTSIHLGSLKKLILS 463
T+LE+L L I L L LN+ H S + +L +L + LS
Sbjct: 104 TSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
Query: 464 GC-------SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNL-GNCLRLEGL 515
++L E L + I + L L L GN +
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIM 221
Query: 516 PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESF-MCHEQMGLL 574
+ + L L L + + + SI ++ L ++ + F + +
Sbjct: 222 KTCLQNLAGLHVHRL---ILGEFKDERNLEIFEPSI--MEGLCDVTIDEFRLTYTNDFSD 276
Query: 575 LPISF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSL 633
+ F L +++ + L I L + + + L + + ++ P L L SL
Sbjct: 277 DIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSL 333
Query: 634 GISH 637
++
Sbjct: 334 TLTM 337
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 9e-04
Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 28/181 (15%)
Query: 490 EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVP 548
IE + ++ + +L +P I S + ++L+ LK LK
Sbjct: 3 SLNPCIEVVPNITYQCMDQ--KLSKVPDDI--PSSTKNIDLSFNPLKILK---------S 49
Query: 549 SSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIEL-PECLGQLSS 606
S + L L C ++ + ++ GL L+ L LT I P L+S
Sbjct: 50 YSFSNFSELQWLDLSR--C--EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105
Query: 607 RSILLLEKNNFERIPESIIQ-LSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEAL 665
L+ + + I L L L ++H +HS LP S+ ++L +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCK-LPAYFSN-----LTNLVHV 158
Query: 666 S 666
Sbjct: 159 D 159
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 65/349 (18%), Positives = 113/349 (32%), Gaps = 67/349 (19%)
Query: 350 CPLKSLSSKIP---PENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLS 405
C K + +P P L++ + IK L + +L+ + L+ + ++ + +
Sbjct: 18 CHRKRFVA-VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGA 75
Query: 406 LATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILS 463
F L L L L+ R L + + L +L KL +S
Sbjct: 76 ---------FNN-------------LFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDIS 112
Query: 464 GCS----NLMSFPELSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSK 518
F +L N++ L + + L+SL L L C L +P++
Sbjct: 113 ENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTE 170
Query: 519 I-CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPI 577
L L L L + I + K L RL + + P
Sbjct: 171 ALSHLHGLIVLRLR---------HLNINAIRDY--SFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 578 SFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESIIQ-LSHLFSLGI 635
+LT L +T C + +P + L L L N I S++ L L + +
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279
Query: 636 SHCERLHSLPE-----LP---------CDLSDIEAHCCSSLEALSGLSI 670
+L + L L+ +E S+ L L +
Sbjct: 280 VGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 4e-15
Identities = 67/344 (19%), Positives = 116/344 (33%), Gaps = 65/344 (18%)
Query: 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHN-----FRGLESTELRYLQ 346
LD+ K + LN F + L + N V F L + LR L
Sbjct: 36 LLDLGKNRIKTLNQDEFASFPHLEELELNE-------NIVSAVEPGAFNNLFN--LRTLG 86
Query: 347 WHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPD 403
LK + + NL L++ + I L + Q L NLK + + + L I
Sbjct: 87 LRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISH 145
Query: 404 LSLA--TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKK 459
+ + +LE L + C ++ +L+ L+VL L+H + ++ L LK
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKV 204
Query: 460 LILSGCSNLMSFPELSC---NIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGL 515
L +S L + N+ LS+ + P ++ L L LNL + +
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTI 263
Query: 516 PSKI-CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLL 574
+ +L L+ + L L + +F
Sbjct: 264 EGSMLHELLRLQEIQLVGGQ-------------------LAVVEPYAFR----------- 293
Query: 575 LPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNF 617
GL L L ++ + L E + + L+L+ N
Sbjct: 294 -----GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 3e-18
Identities = 59/340 (17%), Positives = 115/340 (33%), Gaps = 56/340 (16%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHN-FRGLESTELRYLQWHGCPLKSLSSKIP 360
+ + + L +F ++ ++ + + F L + L ++ +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL--VSVTIERVKDFSY 302
Query: 361 PENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC-- 418
LE+ + Q +L +LK + + + +LE L+
Sbjct: 303 NFGWQHLELVNCKFGQF--PTLKLKSLKRLTFTSN-KGGNAFSEVDLPSLEFLDLSRNGL 359
Query: 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIH-LGSLKKLILSGCSNLMSFPELSC- 476
+ S L L+L + ++S++ L L+ L NL E S
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVF 417
Query: 477 ----NIEELSLDGTAIQEFPSSI-ERLSSLILLNL-GNCLRLEGLPSKICKLKSLERLNL 530
N+ L + T + + I LSSL +L + GN + LP +L++L L+L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 531 AEALKELKAEGIAIREVPSSIACLKN-LGRLSFESFMCHEQMGLLLPISFGLTSLTYLRL 589
+ + L +LS +F L+SL L +
Sbjct: 478 S-----------------------QCQLEQLSPTAFN-------------SLSSLQVLNM 501
Query: 590 TDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESIIQLS 628
+ +P+ +L+S + L N ++ I LS
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 541
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-16
Identities = 60/323 (18%), Positives = 114/323 (35%), Gaps = 24/323 (7%)
Query: 339 STELRYLQWHGCPLKSLSSKIPP--ENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHS 395
+ L PL+ L S L L++ I+ + G Q L +L + L+ +
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 396 EHLTKIPDLSLA--TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI- 452
+ + + + ++L+ L + I +L L LN+ H + S
Sbjct: 87 -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY 144
Query: 453 --HLGSLKKLILSG-------CSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLIL 503
+L +L+ L LS C++L ++ L L + + L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204
Query: 504 LNL-GNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSF 562
L L N L + + I L LE L L E + EG + S++ L NL F
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRL--VLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 563 ESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPE 622
+ ++ + LT+++ L I + + + + L+ F + P
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV-NCKFGQFPT 321
Query: 623 SIIQLSHLFSLGISHCERLHSLP 645
++L L L + + +
Sbjct: 322 --LKLKSLKRLTFTSN-KGGNAF 341
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 5e-15
Identities = 68/386 (17%), Positives = 118/386 (30%), Gaps = 48/386 (12%)
Query: 279 LTNNTGTEAIEGISLDMSKVKEIHLN--------AGSFTNMHKLRFFKFYSSHYGENVNK 330
LT N G +S ++++ ++ L+ + ++
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-QSFKL 141
Query: 331 VHNFRGLESTELRYLQWHGCPLKSLSSKIP------PENLVSLEMPHSSIKQLWKGVQRL 384
F L T L +L ++S+ P +SL++ + + + G +
Sbjct: 142 PEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 385 VNLKHINLSHSEHLTKIPDLSLA--TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442
+ L + L ++ + + LE + L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV--------LGEFRNEGNLEKFDKSAL 251
Query: 443 RSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLI 502
L +L+ L L + F L N+ SL I+
Sbjct: 252 EGLCNLTIE-EF-RLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIERVKD-FSYNFGWQ 307
Query: 503 LLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSF 562
L L N + P+ KLKSL+RL S + L +L L
Sbjct: 308 HLELVN-CKFGQFPT--LKLKSLKRLTFT---------SNKGGNAFSEVD-LPSLEFLDL 354
Query: 563 ESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPE 622
S G FG TSL YL L+ G+I + L L + +N +++ E
Sbjct: 355 -SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Query: 623 SII--QLSHLFSLGISHCERLHSLPE 646
+ L +L L ISH
Sbjct: 414 FSVFLSLRNLIYLDISHT-HTRVAFN 438
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 31/213 (14%)
Query: 465 CS--NLMSFPE-LSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKIC 520
C N P+ L + + L L ++ S S L +L+L C ++ +
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAY 72
Query: 521 -KLKSLERLNLAE---------------ALKELKAEGIAIREVPS-SIACLKNLGRLSFE 563
L L L L +L++L A + + + I LK L L+
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132
Query: 564 SFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPE----CLGQLSSRSILL-LEKNNF 617
+ LP F LT+L +L L+ I + L Q+ ++ L L N
Sbjct: 133 HNLIQS---FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 618 ERIPESIIQLSHLFSLGISHCERLHSLPELPCD 650
I + L L + + ++ +
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 4e-18
Identities = 57/276 (20%), Positives = 106/276 (38%), Gaps = 42/276 (15%)
Query: 383 RLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLK 440
L L+ + LS+S + + +L SL+ + + T +S+ + L LN+
Sbjct: 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134
Query: 441 HCRSLT---SLSTSIHLGSLKKLILSGC-------SNLMSFPELSCNIEELSLDGTAIQ- 489
+L +S + L SL+ L LS + ++ L++ G I
Sbjct: 135 SN-TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG-ELKHLAISGNKISG 192
Query: 490 EFPSSIERLSSLILLNLGNCLRLEG-LPSKICKLKSLERLNLAE-ALKELKAEGIAIREV 547
+ + R +L L++ + +P + +L+ L+++ L G +
Sbjct: 193 DVD--VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQHLDISGNKL-----SG----DF 239
Query: 548 PSSIACLKNLG--RLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECL-GQ 603
+I+ L +S F+ +P L SL YL L + E+P+ L G
Sbjct: 240 SRAISTCTELKLLNISSNQFVGP------IP-PLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 604 LSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHC 638
+ + L L N+F +P S L SL +S
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-16
Identities = 81/417 (19%), Positives = 140/417 (33%), Gaps = 83/417 (19%)
Query: 279 LTNNTGTEAIEGISLDMSKVKEIHLNAGSFT----------NMHKLRFFKFYSSHYGENV 328
L+N+ ++ G + + + L+ S + + L+F S+ +
Sbjct: 84 LSNSHINGSVSGFKC-SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFP 141
Query: 329 NKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPE-----NLVSLEMPHSSIKQLWKG--- 380
KV L L L S+S L+ S ++ G
Sbjct: 142 GKVSGGLKL--NSLEVLDLSAN---SISGANVVGWVLSDGCGELKHLAISGNKI-SGDVD 195
Query: 381 VQRLVNLKHINLSHSEHLT-KIPDLSLATNLESLNFQGCTCLLETH--SSIQYLNKLVVL 437
V R VNL+ +++S + + + IP L + L+ L+ G L +I +L +L
Sbjct: 196 VSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNK--LSGDFSRAISTCTELKLL 252
Query: 438 NLKHCRSLTSLSTSI---HLGSLKKLILSGCSNLM-SFPELSC----NIEELSLDGTAIQ 489
N+ I L SL+ L L+ P+ + L L G
Sbjct: 253 NISSN----QFVGPIPPLPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 490 -EFPSSIERLSSLILLNLGNCLRLEGL--PSKICKLKSLERLNLAEALKELKAEGIAIRE 546
P S L L L + G + K++ L+ L+L+ + G E
Sbjct: 308 GAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFN----EFSG----E 358
Query: 547 VPSSIA-CLKNLGRLSFES---------FMCHEQMGLL-------------LPISFG-LT 582
+P S+ +L L S +C L +P + +
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 583 SLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISH 637
L L L+ + +P LG LS L L N E IP+ ++ + L +L +
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 65/354 (18%), Positives = 106/354 (29%), Gaps = 88/354 (24%)
Query: 354 SLSSKIPPE------NLVSLEMPHSSIK---QLWKGVQRLVNLKHINLSHSEHLT-KIPD 403
S ++P +L++L++ ++ L+ + L ++ T KIP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPP 412
Query: 404 -LSLATNLESL-----NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT-SLSTSI-HLG 455
LS + L SL G SS+ L+KL L L L + + ++
Sbjct: 413 TLSNCSELVSLHLSFNYLSG-----TIPSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVK 466
Query: 456 SLKKLILSG-------------CSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLI 502
+L+ LIL C+NL LS N L G P I RL +L
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWI-SLSNN----RLTGE----IPKWIGRLENLA 517
Query: 503 LLNLGNCLRLEG-LPSKICKLKSLERLNLAE------------ALKELKAEGIAIREVPS 549
+L L N G +P+++ +SL L+L A +
Sbjct: 518 ILKLSNN-SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRS 608
I + Q G+ L++ +T S
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQ-GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 609 ILLLEKNNFE-------------------------RIPESIIQLSHLFSLGISH 637
L + N IP+ + L L L +S
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 6e-12
Identities = 66/387 (17%), Positives = 116/387 (29%), Gaps = 104/387 (26%)
Query: 340 TELRYLQWHGCPLKSLSSKIPPE--NLVSLEM------------PHSSIKQLWKGVQRLV 385
L L G +PP + LE P ++ ++
Sbjct: 294 DTLTGLDLSGN---HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL-------LKMR 343
Query: 386 NLKHINLSHSEHLT-KIPD--LSLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLK 440
LK ++LS + + ++P+ +L+ +L +L+ + + + N L L L+
Sbjct: 344 GLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402
Query: 441 H-------------CRSLTSLSTS------------IHLGSLKKLILSGCSNLMS--FPE 473
+ C L SL S L L+ L L N++ P+
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW--LNMLEGEIPQ 460
Query: 474 ---LSCNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLRLEG-LPSKICKLKSLERL 528
+E L LD + E PS + ++L ++L N RL G +P I +L++L L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAIL 519
Query: 529 NLAE------------------------------------ALKELKAEGIAIREVPSSIA 552
L+ A + I
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 553 CLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILL 611
+ Q G+ L++ +T S L
Sbjct: 580 NDGMKKECHGAGNLLEFQ-GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 612 LEKNNFE-RIPESIIQLSHLFSLGISH 637
+ N IP+ I + +LF L + H
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGH 665
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 54/282 (19%), Positives = 96/282 (34%), Gaps = 61/282 (21%)
Query: 384 LVNLKHINLSHSEHLT-KIPD-LSLATNLESL-----NFQGCTCLLETHSSIQYLNKLVV 436
+ L+ + L + LT +IP LS TNL + G E I L L +
Sbjct: 465 VKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTG-----EIPKWIGRLENLAI 518
Query: 437 LNLKHCRSLTSLSTSI--HLGSLKKLI--------LSGCSNLMSFPELSCNIEELSLDGT 486
L L + S +I LG + LI +G + P
Sbjct: 519 LKLSNNS----FSGNIPAELGDCRSLIWLDLNTNLFNG-----TIPAAMFKQSGKIAANF 569
Query: 487 AIQEFPSSIERLSSLILLNL-GNCLRLEG-LPSKICKLKSLERLNLAEALKELKAEGIAI 544
+ I+ + GN L +G ++ +L + N+ G
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS----RVYGG--- 622
Query: 545 REVPSSIACLKNLGR--LSFESFMCHEQMGLLLPISFG-LTSLTYL-----RLTDCGIIE 596
+ ++ +S+ + +P G + L L ++ G I
Sbjct: 623 -HTSPTFDNNGSMMFLDMSYNMLSGY------IPKEIGSMPYLFILNLGHNDIS--GSI- 672
Query: 597 LPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISH 637
P+ +G L +IL L N + RIP+++ L+ L + +S+
Sbjct: 673 -PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 4e-18
Identities = 81/432 (18%), Positives = 148/432 (34%), Gaps = 57/432 (13%)
Query: 291 ISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKV--HNFRGLESTELRYLQWH 348
+SLD+S + G+F + +L ++ NV K GLE L ++
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 349 GCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGV-------QRLVNLKHINLSHSEHLTKI 401
K E L +L + + L + L N+ +L + ++
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERV 297
Query: 402 PDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLI 461
D S + L C ++ L +L + K + + + L SL+ L
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK----GGNAFSEVDLPSLEFLD 353
Query: 462 LSGCSNLM------SFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNL-GNCLRLEG 514
LS S + +++ L L + S+ L L L+ + L+
Sbjct: 354 LSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 515 LPSKICKLKSLERLNLAE---------------ALKELKAEG--IAIREVPSSIACLKNL 557
S L++L L+++ +L+ LK G +P L+NL
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 558 GRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKN 615
L Q+ L P +F L+SL L ++ L L+S +L N
Sbjct: 473 TFLDLS----QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 616 NFERIPESIIQ--LSHLFSLGISH------CER---LHSLPELPCDLSDIEAHCCSSLEA 664
+ + +Q S L L ++ CE L + + L ++E C++
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588
Query: 665 LSGLSILFTQTS 676
G+ +L +
Sbjct: 589 KQGMPVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 9e-17
Identities = 61/332 (18%), Positives = 111/332 (33%), Gaps = 33/332 (9%)
Query: 339 STELRYLQWHGCPLKSLSSKIPPE-----NLVSLEMPHSSIKQLWKGV-QRLVNLKHINL 392
+ L PL+ L L L++ I+ + G Q L +L + L
Sbjct: 27 PFSTKNLDLSFNPLRHL---GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 393 SHSEHLTKIPDLSLA--TNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCRSLTSL 448
+ + + + + + ++L+ L L I +L L LN+ H + S
Sbjct: 84 TGN-PIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNL-IQSF 139
Query: 449 STSI---HLGSLKKLILSGC-------SNLMSFPELSCNIEELSLDGTAIQEFPSSIERL 498
+L +L+ L LS ++L ++ L L + +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 499 SSLILLNL-GNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNL 557
L L L N L + + I L LE L L E + EG + S++ L NL
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL--VLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 558 GRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNF 617
F + ++ + LT+++ L I + + L L F
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKF 316
Query: 618 ERIPESIIQLSHLFSLGISHCERLHSLPELPC 649
+ P L L L + + ++ E+
Sbjct: 317 GQFPTLK--LKSLKRLTFTSNKGGNAFSEVDL 346
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 3e-15
Identities = 76/442 (17%), Positives = 143/442 (32%), Gaps = 84/442 (19%)
Query: 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHN--FRGLESTELRYLQWHG 349
+LD+S HL + SF + +L+ + + + ++ L + L L G
Sbjct: 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRC----EIQTIEDGAYQSL--SHLSTLILTG 85
Query: 350 CPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIP---D 403
P++SL+ +L L +++ L L LK +N++H+ +
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY 144
Query: 404 LSLATNLESLNFQGC--TCLLETHSSIQYLNKL----VVLNLKHCRSLTSLSTSIHLGSL 457
S TNLE L+ + + ++ L+++ + L+L + L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202
Query: 458 KKLILSGCSNLMSFPELSC----NIEELSLDGTAIQEF-------PSSIERLSSLILLNL 506
KL L + ++ + +E L + S++E L +L +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 507 ---GNCLRLEGLPSKICKLKSLERLNLAE-------------ALKELKAEGIAIREVPS- 549
L+ + L ++ +L + L+ + P+
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322
Query: 550 -------------------SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLT 590
S L +L L S G FG TSL YL L+
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL-SRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 591 DCGIIELPECLGQLSSRSILLLEKNNFER-IPESIIQ-LSHLFSLGISHCERLHSLPELP 648
G+I + L L + +N ++ S+ L +L L ISH
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------- 432
Query: 649 CDLSDIEAHCCSSLEALSGLSI 670
+ L +L L +
Sbjct: 433 --TRVAFNGIFNGLSSLEVLKM 452
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 9e-09
Identities = 35/191 (18%), Positives = 61/191 (31%), Gaps = 47/191 (24%)
Query: 465 CS--NLMSFP-ELSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLPSK-I 519
C N P L + + L L ++ S L +L+L C ++ +
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAY 72
Query: 520 CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKN-LGRLSFESFMCHEQMGLLLPIS 578
L L L L N + L+ +F
Sbjct: 73 QSLSHLSTLILTG-----------------------NPIQSLALGAF------------- 96
Query: 579 FGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFER--IPESIIQLSHLFSLGI 635
GL+SL L + + L +G L + L + N + +PE L++L L +
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 636 SHCERLHSLPE 646
S ++ S+
Sbjct: 157 SSN-KIQSIYC 166
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 4e-18
Identities = 52/348 (14%), Positives = 102/348 (29%), Gaps = 62/348 (17%)
Query: 351 PLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPDLSLATN 409
+S + P +N S ++ ++L L ++ +S +T + + T
Sbjct: 7 QTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTGIEKLTG 65
Query: 410 LESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSN 467
L L T L + L L + LT+L + L L L
Sbjct: 66 LTKLICTSNNITTL-----DLSQNTNLTYLACDSNK-LTNLDVT-PLTKLTYLNCDTN-K 117
Query: 468 LMSFPELSC-NIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLE 526
L + L+ + E + + L L+ ++ L + L
Sbjct: 118 LTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLT 173
Query: 527 RLNLAE------------ALKELKAEGIAIREVPSSIACLKNLGRLS-----FESFMCHE 569
L+ + L L + I ++ + L L
Sbjct: 174 TLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE----- 226
Query: 570 QMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSH 629
+ ++ LT LTY + + EL + LS + L + + I + +
Sbjct: 227 -----IDVT-PLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQ 276
Query: 630 LFSLGISHCERLHSLP--------ELPCD---LSDIEAHCCSSLEALS 666
L C ++ L L C +++++ L L
Sbjct: 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLY 324
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 56/360 (15%), Positives = 107/360 (29%), Gaps = 55/360 (15%)
Query: 329 NKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLK 388
NK+ N T+L YL L L P L L +++ ++ V L
Sbjct: 95 NKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNP-LLTYLNCARNTLTEI--DVSHNTQLT 151
Query: 389 HINLSHSEHLTKIPDLSLATNLESLNFQGC--TCL-LETHSSIQYL----NKLVVLNLKH 441
++ + D++ T L +L+ T L + + + L N + L+L
Sbjct: 152 ELDCHLN-KKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQ 210
Query: 442 CRSLTSLS------TSIHLGSLKKLILSGCSN--LMSFPELSC-NIEELSLDGTAIQEFP 492
LT L T I + L +L CS L + + L T + E
Sbjct: 211 NIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270
Query: 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE------------ALKELKAE 540
+ + LI C +++ L + L L+ L L
Sbjct: 271 --LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326
Query: 541 GIAIREVPSSIACLKNLGRLS-----FESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII 595
+ E+ ++ L LS + + +L + I
Sbjct: 327 NTELTELD--VSHNTKLKSLSCVNAHIQD----------FSSVGKIPALNNNFEAEGQTI 374
Query: 596 ELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIE 655
+P+ L++ S+ + + + + + + L D +
Sbjct: 375 TMPKET--LTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 87.1 bits (215), Expect = 8e-18
Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 12/207 (5%)
Query: 329 NKVHNFRGLES-TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387
+ ++ E + ++ ++ + +S IK + +G+Q L N+
Sbjct: 9 TPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNV 67
Query: 388 KHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTS 447
+ L+ + LT I L+ NL L ++ SS++ L KL L+L+H ++
Sbjct: 68 TKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK--IKDLSSLKDLKKLKSLSLEHNG-ISD 123
Query: 448 LSTSIHLGSLKKLILSGC--SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLN 505
++ +HL L+ L L +++ L+ ++ LSL+ I + + L+ L L
Sbjct: 124 INGLVHLPQLESLYLGNNKITDITVLSRLT-KLDTLSLEDNQISDI-VPLAGLTKLQNLY 181
Query: 506 LGNCLRLEGLPSKICKLKSLERLNLAE 532
L + L + + LK+L+ L L
Sbjct: 182 LSKN-HISDLRA-LAGLKNLDVLELFS 206
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 8e-09
Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 33/225 (14%)
Query: 457 LKKLILSGC--SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG 514
+ + I + + + +L ++ + + L+S+ + N
Sbjct: 1 MGETITVSTPIKQIFPDDAFA-ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS----- 53
Query: 515 LPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLL 574
+KS++ + + +L G + ++ + LKNLG L ++ L
Sbjct: 54 ------DIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFL----DENKIKDL 102
Query: 575 LPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLG 634
+ L L L L GI ++ L L L L N I + +L+ L +L
Sbjct: 103 SSLK-DLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 159
Query: 635 ISH--------CERLHSLPELPCDLSDIEAHCCSSLEALSGLSIL 671
+ L L L LS +L L L +L
Sbjct: 160 LEDNQISDIVPLAGLTKLQNL--YLSKNHISDLRALAGLKNLDVL 202
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 7e-17
Identities = 52/377 (13%), Positives = 122/377 (32%), Gaps = 55/377 (14%)
Query: 293 LDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKV-HNFRGLESTELRYLQWHGCP 351
L++ + + + S ++ + + S + + ELR
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212
Query: 352 LKSLSSKIPPENLVSLEMPHSSIK--------QLWKGVQRLVNLKHINLSH--------- 394
L + L S + +L + + L ++ + +
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272
Query: 395 -SEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI- 452
S+ ++++ + + L+ + + L K+ + +++ + + + S
Sbjct: 273 ESDVVSELGKVET-VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFS 330
Query: 453 -HLGSLKKLILSG-------CSNLMSFPELSCNIEELSLDG---TAIQEFPSSIERLSSL 501
HL SL+ L LS N +++ L L ++Q+ + L +L
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKNL 389
Query: 502 ILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLS 561
L++ +P + + LNL+ IR V + I + L L
Sbjct: 390 TSLDISRN-TFHPMPDSCQWPEKMRFLNLS---------STGIRVVKTCI--PQTLEVLD 437
Query: 562 FESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIP 621
+ L S L L L ++ + LP+ ++ + +N + +P
Sbjct: 438 VSNN-------NLDSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVP 489
Query: 622 ESIIQ-LSHLFSLGISH 637
+ I L+ L + +
Sbjct: 490 DGIFDRLTSLQKIWLHT 506
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-14
Identities = 58/387 (14%), Positives = 126/387 (32%), Gaps = 78/387 (20%)
Query: 304 NAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPP-- 361
F N+ L+ + + + + +F GL S L L+ L++ S+
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTS--LNELEIKALSLRNYQSQSLKSI 171
Query: 362 ENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSH----SEHLTKIPDLSLATNLESLNFQ 416
++ L + S L + L +++++ L + +P +++ ++ L F+
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231
Query: 417 GCT-------CLLETHSSIQYLNKLVVLNLKHCRSLTSLS----------TSIHLGSLKK 459
G LL+ I L+++ + L + + ++++
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 460 LILSGCSNLMSFPELSC---NIEELSLDGTAIQEFPSSI-ERLSSLILLNL-GNCLRLEG 514
L + + ++ ++++ + + P S + L SL L+L N + E
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350
Query: 515 LPSKIC--KLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMG 572
L + C SL+ L L++ +L + +
Sbjct: 351 LKNSACKGAWPSLQTLVLSQN----------------------HLRSMQKTGEILL---- 384
Query: 573 LLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFS 632
L +LT L ++ +P+ L L + I L
Sbjct: 385 -------TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEV 435
Query: 633 LGISHC------ERLHSLPELPCDLSD 653
L +S+ L L EL +S
Sbjct: 436 LDVSNNNLDSFSLFLPRLQEL--YISR 460
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 59/344 (17%), Positives = 116/344 (33%), Gaps = 57/344 (16%)
Query: 391 NLSHSEHLTKIPDLSLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCRSLTSL 448
+ T IP L ++SL+ T + H ++ L VL LK R + ++
Sbjct: 11 DGRSR-SFTSIPS-GLTAAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSR-INTI 65
Query: 449 STSI--HLGSLKKLILSGCSNLMSFPELSC----NIEELSLDGTAIQEFPSS--IERLSS 500
LGSL+ L LS +L S +++ L+L G Q + L++
Sbjct: 66 EGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124
Query: 501 LILLNLGNCLRLEGLPSK-ICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLG 558
L L +GN + L SL L + +L+ + S+ ++++
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ---------SQSLKSIRDIH 175
Query: 559 RLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPE---------CLGQLSSRS 608
L+ + LL I L+S+ YL L D + + +
Sbjct: 176 HLTLH----LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231
Query: 609 ILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCS-SLEALSG 667
+L +F + + + + L + C L+ L + SD+ + +
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDC-TLNGLGDFNPSESDVVSELGKVETVTIRR 290
Query: 668 LSILFTQTSWNSQFFYFVNCFK---------LDKNELKEIIKDA 702
L I F+ + ++ +++ +
Sbjct: 291 LHI-----PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-14
Identities = 51/355 (14%), Positives = 103/355 (29%), Gaps = 53/355 (14%)
Query: 332 HNFRGLESTELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGV-QRLVNLK 388
+ R L+ L + ++ +L L++ + + L L +LK
Sbjct: 44 GDLRAC--ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101
Query: 389 HINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSL 448
++NL + + SL NL + L L + + + + +
Sbjct: 102 YLNLMGN-PYQTLGVTSLFPNLTN---------------------LQTLRIGNVETFSEI 139
Query: 449 STSI--HLGSLKKLILSGCSNLMSFPELS----CNIEELSLDGTAIQEFPSSI-ERLSSL 501
L SL +L + +L ++ S +I L+L + + LSS+
Sbjct: 140 RRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198
Query: 502 ILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLS 561
L L L + + A + + E+ + + L +
Sbjct: 199 RYLEL-RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 562 FESFMCHEQMGLLLPISFG---------LTSLTYLRLTDCGIIELPE-CLGQLSSRSILL 611
F+ +G P ++ L + + L +
Sbjct: 258 FDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 612 LEKNNFERIPESIIQ-LSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEAL 665
+E + +P S Q L L L +S + SL+ L
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGA----WPSLQTL 366
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 22/153 (14%), Positives = 54/153 (35%), Gaps = 14/153 (9%)
Query: 291 ISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGC 350
+ L + ++ + + L + + + + + E +R+L
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD---SCQWPEK--MRFLNLSST 420
Query: 351 PLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNL 410
++ + + IP L L++ ++++ L L+ + +S + L +PD SL L
Sbjct: 421 GIRVVKTCIPQ-TLEVLDVSNNNLDSFSLF---LPRLQELYISRN-KLKTLPDASLFPVL 475
Query: 411 ESLNFQGCTCLLET--HSSIQYLNKLVVLNLKH 441
+ L++ L L + L
Sbjct: 476 LVMKISR--NQLKSVPDGIFDRLTSLQKIWLHT 506
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 35/191 (18%)
Query: 499 SSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNL 557
+ + + + +PS + +++ L+L+ + + + NL
Sbjct: 5 DASGVCDGRS-RSFTSIPSGL--TAAMKSLDLSFNKITYIG---------HGDLRACANL 52
Query: 558 GRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKN 615
L + ++ + +F L SL +L L+D + L G LSS L L N
Sbjct: 53 QVLI----LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Query: 616 NFERIPESII--QLSHLFSLGISHCERLHSLPELPCD--------------LSDIEAHCC 659
++ + + + L++L +L I + E + + L + ++
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168
Query: 660 SSLEALSGLSI 670
S+ + L++
Sbjct: 169 KSIRDIHHLTL 179
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 59/311 (18%), Positives = 118/311 (37%), Gaps = 44/311 (14%)
Query: 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCR 443
+L+ + S L K+P L + L+ Q T + + L L L L + +
Sbjct: 32 HLRVVQCSD-LGLEKVPK-DLPPDTALLDLQNNKITEI--KDGDFKNLKNLHTLILINNK 87
Query: 444 SLTSLSTSI--HLGSLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEFPSSI-ERLS 499
++ +S L L++L LS + L P ++ ++EL + I + S+ L+
Sbjct: 88 -ISKISPGAFAPLVKLERLYLSK-NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLN 145
Query: 500 SLILLNLG-NCLRLEGLPSKI-CKLKSLERLNLAE------------ALKELKAEGIAIR 545
+I++ LG N L+ G+ + +K L + +A+ +L EL +G I
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205
Query: 546 EVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPECLGQ 603
+V + S+ L NL +L + + + S L L L + ++++P L
Sbjct: 206 KVDAASLKGLNNLAKLG----LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 604 LSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL-----PCDLSDIEAHC 658
++ L NN I + + + S + P +I+
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNT-------KKASYSGVSLFSNPVQYWEIQPST 314
Query: 659 CSSLEALSGLS 669
+ + +
Sbjct: 315 FRCVYVRAAVQ 325
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 36/229 (15%), Positives = 80/229 (34%), Gaps = 61/229 (26%)
Query: 292 SLDMS--KVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHG 349
+++ +K + G+F M K L Y++
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKK----------------------------LSYIRIAD 180
Query: 350 CPLKSLSSKIPPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSLA- 407
+ ++ +PP +L L + + I ++ + L NL + LS + ++ + + SLA
Sbjct: 181 TNITTIPQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN 238
Query: 408 -TNLESLNFQGCTCLLETHSSIQYLNKLVVL--NLKHCRSLTSLSTSIHLGS--LKKLIL 462
+L L+ NKLV + L + + + +L + + +
Sbjct: 239 TPHLRELHLNN--------------NKLVKVPGGLADHKYIQVV----YLHNNNISAIGS 280
Query: 463 SGCSNLMSFPELSCNIEELSLDGTAIQEF---PSSIERLSSLILLNLGN 508
+ + + + +SL +Q + PS+ + + LGN
Sbjct: 281 NDFCPPGYNTKKA-SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 8e-16
Identities = 51/280 (18%), Positives = 107/280 (38%), Gaps = 38/280 (13%)
Query: 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCR 443
+L+ + S L +P ++ + L+ Q + L + L L L L + +
Sbjct: 34 HLRVVQCSDL-GLKAVPK-EISPDTTLLDLQNNDISEL--RKDDFKGLQHLYALVLVNNK 89
Query: 444 SLTSLSTSI--HLGSLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEFPSSI-ERLS 499
++ + L L+KL +S ++L+ P L ++ EL + I++ P + L
Sbjct: 90 -ISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147
Query: 500 SLILLNLG-NCLRLEGLPSKICKLKSLERLNLAE------------ALKELKAEGIAIRE 546
++ + +G N L G L L ++E L EL + I+
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA 207
Query: 547 VPS-SIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPECLGQL 604
+ + L RL + H Q+ ++ S L +L L L + + +P L L
Sbjct: 208 IELEDLLRYSKLYRLG----LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263
Query: 605 SSRSILLLEKNNFERIPESI-------IQLSHLFSLGISH 637
++ L NN ++ + ++ ++ + + +
Sbjct: 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 53/236 (22%)
Query: 472 PELSCNIEELSLDGTAIQEFPSSI----------------------ERLSSLILLNLGNC 509
C++ + ++ P I + L L L L N
Sbjct: 29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88
Query: 510 LRLEGLPSKI-CKLKSLERLNLA------------EALKELKAEGIAIREVPSSI-ACLK 555
++ + K L+ L++L ++ +L EL+ IR+VP + + L+
Sbjct: 89 -KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147
Query: 556 NLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKN 615
N+ + P +F L YLR+++ + +P+ + + L L+ N
Sbjct: 148 NMNCIEMGGNPLENSG--FEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDHN 203
Query: 616 NFERIPESIIQ-LSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSI 670
+ I + S L+ LG+ H + + IE S L L L +
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQ-----------IRMIENGSLSFLPTLRELHL 248
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 47/238 (19%), Positives = 84/238 (35%), Gaps = 24/238 (10%)
Query: 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL 421
+ + S+ L ++ I ++S+ + + + N+ L G
Sbjct: 24 AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNG--NK 79
Query: 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC--SNLMSFPELSCNIE 479
L + L L L L + + LS+ L LK L L S++ L +E
Sbjct: 80 LTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP-QLE 137
Query: 480 ELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKA 539
L L I + + + RL+ L L+L + +I + L L L+ L
Sbjct: 138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDN--------QISDIVPLAGLT---KLQNLYL 185
Query: 540 EGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL 597
I ++ ++A LKNL L S C + L ++ TD ++
Sbjct: 186 SKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSN---LVVPNTVKNTDGSLVTP 239
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 38/183 (20%), Positives = 73/183 (39%), Gaps = 18/183 (9%)
Query: 351 PLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNL 410
P L N V + S+ L + L +++ N +S ++ + + TNL
Sbjct: 14 PDPGL------ANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSLAGMQFFTNL 65
Query: 411 ESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC--SNL 468
+ L+ + S ++ L KL L++ R L +L+ L +L L +
Sbjct: 66 KELHLSH--NQISDLSPLKDLTKLEELSVNRNR-LKNLNGIPSA-CLSRLFLDNNELRDT 121
Query: 469 MSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERL 528
S L N+E LS+ ++ + LS L +L+L + + +LK + +
Sbjct: 122 DSLIHLK-NLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWI 177
Query: 529 NLA 531
+L
Sbjct: 178 DLT 180
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 50/262 (19%)
Query: 373 SIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLN 432
I Q+ L N NL +T + + +++ N +++ + +Q+
Sbjct: 8 PINQV-FPDPGLANAVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNS--NIQSLAGMQFFT 63
Query: 433 KLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELS-CNIEELSLDGTAIQEF 491
L L+L H + ++ LS L L++L ++ L + + + L LD +++
Sbjct: 64 NLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNNELRDT 121
Query: 492 PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSI 551
S+ L +L +L++ N K+ + L L+ L+ L G I ++
Sbjct: 122 -DSLIHLKNLEILSIRNN--------KLKSIVMLGFLS---KLEVLDLHGNEI----TNT 165
Query: 552 ACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILL 611
L L + ++ LT + P + I
Sbjct: 166 GGLTRL------------------------KKVNWIDLTGQKCVNEP--VKYQPELYITN 199
Query: 612 LEKNNFERIPESIIQLSHLFSL 633
K+ R S +S+ S
Sbjct: 200 TVKDPDGRW-ISPYYISNGGSY 220
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 329 NKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLK 388
N++ N G+ S L L L+ S I +NL L + ++ +K + + L L+
Sbjct: 95 NRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLE 153
Query: 389 HINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439
++L +T L+ + ++ G C + ++Y +L + N
Sbjct: 154 VLDLHG-NEITNTGGLTRLKKVNWIDLTGQKC---VNEPVKYQPELYITNT 200
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
Query: 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL 421
+L + + + ++ L G++ N+K + +++ H T +S +NLE L G
Sbjct: 44 NSLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVT 101
Query: 422 LETHSSIQYLNKLVVLNLKHCR-SLTSLSTSIHLGSLKKLILSGCSNLMSFPELS--CNI 478
+ ++ L L +L++ H + L+ L + + LS + L +
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161
Query: 479 EELSLDGTAIQEFPSSIERLSSLILLNLGN 508
+ L++ + ++ IE L L +
Sbjct: 162 KSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 9/137 (6%)
Query: 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSE-HLTKIPDLSLATNLESLNFQGCTCL 421
N+ L + + + L NL+ + + + KIP+LS T+L L+
Sbjct: 67 NIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC--SNLMSFPELSCNIE 479
+ I L K+ ++L + ++T + L LK L + + + +
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP-KLN 184
Query: 480 ELSLDGTAIQEFPSSIE 496
+L I +
Sbjct: 185 QLYAFSQTI----GGKK 197
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 29/211 (13%)
Query: 390 INLSHSEHLTKIPDLSLATNL-ESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR--SLT 446
L S+ IPD + L L + E +N L + L + LT
Sbjct: 6 TGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQ-----MNSLTYITLANINVTDLT 60
Query: 447 SLSTSIHLGSLKKLILSGC--SNLMSFPELSCNIEELSLDGTAIQ-EFPSSIERLSSLIL 503
+ + ++K L ++ +N LS N+E L + G + + ++ L+SL L
Sbjct: 61 GIE---YAHNIKDLTINNIHATNYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTL 116
Query: 504 LNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFE 563
L++ + + + +KI L + ++L+ I ++ + L L L+
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGA--------ITDI-MPLKTLPELKSLN-- 165
Query: 564 SFMCHEQMGLLLPISFGLTSLTYLRLTDCGI 594
+ + + I L L I
Sbjct: 166 --IQFDGVHDYRGIE-DFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 27/161 (16%), Positives = 56/161 (34%), Gaps = 15/161 (9%)
Query: 477 NIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKE 536
++ ++L + + + IE ++ L + N + I L +LERL + +
Sbjct: 45 SLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGK--D 99
Query: 537 LKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE 596
+ ++ I +++ L +L L +L I+ L + + L+ G I
Sbjct: 100 VTSDKI------PNLSGLTSLTLLDISH--SAHDDSILTKIN-TLPKVNSIDLSYNGAIT 150
Query: 597 LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH 637
L L L ++ + I L L
Sbjct: 151 DIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 53/245 (21%), Positives = 96/245 (39%), Gaps = 52/245 (21%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHN-----FRGLESTELRYLQWHGCPLKSLS 356
+ SF ++ L + N + F GL + L L+ L ++
Sbjct: 78 IIKVNSFKHLRHLEILQLSR-------NHIRTIEIGAFNGLAN--LNTLELFDNRLTTIP 128
Query: 357 SKI--PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSLATNLESL 413
+ L L + ++ I+ + R+ +L+ ++L + L+ I + +
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-------- 180
Query: 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMS--- 470
F+G L+ L LNL C L + L L +L LSG N +S
Sbjct: 181 -FEG-------------LSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSG--NHLSAIR 223
Query: 471 ---FPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKICK-LKSL 525
F L ++++L + + IQ + + L SL+ +NL + L LP + L L
Sbjct: 224 PGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHL 281
Query: 526 ERLNL 530
ER++L
Sbjct: 282 ERIHL 286
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 55/222 (24%), Positives = 83/222 (37%), Gaps = 48/222 (21%)
Query: 434 LVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGC--SNLM--SFPELSCNIEELSLDGTA 487
+LNL + + + + HL L+ L LS + +F L+ N+ L L
Sbjct: 66 TRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNR 123
Query: 488 IQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKI-CKLKSLERLNLAEALKELKAEGIAIR 545
+ P+ LS L L L N +E +PS ++ SL RL+L E
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGE------------- 169
Query: 546 EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLS 605
LK L +S +F GL++L YL L C + E+P L L
Sbjct: 170 --------LKRLSYISEGAFE-------------GLSNLRYLNLAMCNLREIPN-LTPLI 207
Query: 606 SRSILLLEKNNFERIPESIIQ-LSHLFSLGISHCERLHSLPE 646
L L N+ I Q L HL L + ++ +
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIER 248
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 65/347 (18%), Positives = 118/347 (34%), Gaps = 85/347 (24%)
Query: 350 CPLKSLSSKIP---PENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLS 405
C K L+S +P P + LE+ + ++ L GV +L L ++LS + L+
Sbjct: 14 CNSKGLTS-VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKG--- 68
Query: 406 LATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-IHLGSLKKLILSG 464
S + G L L+L + ++S++ + L L+ L
Sbjct: 69 ----CCSQSDFG-------------TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQH 110
Query: 465 CSNLMSFPELSC-----NIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSK 518
NL E S N+ L + T + + I LSSL +L + E
Sbjct: 111 S-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 519 I-CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPI 577
I +L++L L+L + ++ + +F
Sbjct: 170 IFTELRNLTFLDL---------SQCQLEQLSPT----------AFN-------------- 196
Query: 578 SFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESIIQ--LSHLFSLG 634
L+SL L ++ L L+S +L N+ + +Q S L L
Sbjct: 197 --SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
Query: 635 ISH------CERLHSLP----ELPCDLSDIEAHCCSSLEALSGLSIL 671
++ C S + L ++E C++ G+ +L
Sbjct: 255 LTQNDFACTC-EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 300
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 36/215 (16%)
Query: 293 LDMS--KVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVH----NFRGLESTELRYLQ 346
L +S + + S L++ N V NF GLE L +L
Sbjct: 57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-------NGVITMSSNFLGLEQ--LEHLD 107
Query: 347 WHGCPLKSLSSKIPPENLVSLE---MPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIP 402
+ LK +S +L +L + H+ + + G+ L +L+ + ++ +
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 403 DLSLA--TNLESLNFQGCTCLLET--HSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGS 456
NL L+ C LE ++ L+ L VLN+ H SL T L S
Sbjct: 168 PDIFTELRNLTFLDLSQ--CQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNS 224
Query: 457 LKKLILSGCSNLMS------FPELSCNIEELSLDG 485
L+ L S N + ++ L+L
Sbjct: 225 LQVLDYS--LNHIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 31/195 (15%)
Query: 475 SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI-CKLKSLERLNLAE- 532
SC+ E+ + + P+ I SS L L + +L+ LP + KL L +L+L+
Sbjct: 6 SCSGTEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN 62
Query: 533 ----------------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLP 576
+LK L + + S+ L+ L L F+ H + +
Sbjct: 63 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ----HSNLKQMSE 118
Query: 577 ISF--GLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNF-ERIPESIIQ-LSHLF 631
S L +L YL ++ LSS +L + N+F E I L +L
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178
Query: 632 SLGISHCERLHSLPE 646
L +S C +L L
Sbjct: 179 FLDLSQC-QLEQLSP 192
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 25/229 (10%)
Query: 350 CPLKSLSSKIP--PENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSL 406
K + IP P + +L++ + ++ + L N+ I +S L ++ S
Sbjct: 18 VTCKDIQR-IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76
Query: 407 A--TNLESLNFQGCTCLLETHSSI-QYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKL-IL 462
+ + + + L + L L L + + L + S IL
Sbjct: 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFIL 135
Query: 463 SGCSNLM-------SFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGL 515
N +F L L L + L + L L +
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVI 195
Query: 516 PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFES 564
+ L ++ +PS L++L L +
Sbjct: 196 DKDAFG-------GVYSGPSLLDVSQTSVTALPSKG--LEHLKELIARN 235
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 4e-09
Identities = 27/190 (14%), Positives = 66/190 (34%), Gaps = 20/190 (10%)
Query: 465 CSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKI-CKL 522
C ++ P L + + L L T ++ PS + L ++ + + + L+ L S L
Sbjct: 20 CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79
Query: 523 KSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGRLSFESFMCHEQMGLLLPISF-- 579
+ + + + + L L L + + + + ++
Sbjct: 80 SKVTHIEIRNT--------RNLTYIDPDALKELPLLKFLG----IFNTGLKMFPDLTKVY 127
Query: 580 GLTSLTYLRLTD-CGIIELPE-CLGQLSSRSILL-LEKNNFERIPESIIQLSHLFSLGIS 636
L +TD + +P L + ++ L L N F + + L ++ ++
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187
Query: 637 HCERLHSLPE 646
+ L + +
Sbjct: 188 KNKYLTVIDK 197
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 30/287 (10%)
Query: 350 CPLKSLSSKIP---PENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLS 405
SL+S IP E + SL++ ++ I + QR VNL+ + L+ + + I + S
Sbjct: 38 GSSGSLNS-IPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDS 95
Query: 406 LA--TNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCR--SLTSLSTSIHLGSLKK 459
+ +LE L+ + L + S + L+ L LNL +L S HL L+
Sbjct: 96 FSSLGSLEHLDLSYNYLSNL--SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 460 LILSGCSNLMS-----FPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLE 513
L + F L+ +EEL +D + +Q + S++ + ++ L L +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHM-KQHI 211
Query: 514 GLPSKI-CKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQM 571
L S+E L L ++ + E+ + L + E +
Sbjct: 212 LLLEIFVDVTSSVECLEL----RDTDLDTFHFSELSTGETNSLIKKFTFR-NVKITDESL 266
Query: 572 GLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNF 617
++ + ++ L L + + +P+ +L+S + L N +
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 43/266 (16%)
Query: 465 CSN--LMSFPE-LSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKI- 519
S+ L S P L+ ++ L L I +S +R +L L L + + +
Sbjct: 38 GSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSF 96
Query: 520 CKLKSLERLNLAE---------------ALKELKAEGIAIREVPSSIACLKNLGRLSFES 564
L SLE L+L+ +L L G + + + + +L +L
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILR 155
Query: 565 FMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE 622
+ + F GLT L L + + + L + + S L+L + E
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215
Query: 623 SIIQ-LSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQF 681
+ S + L L S++ +SL + +
Sbjct: 216 IFVDVTSSVECL------ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT---DESL 266
Query: 682 FYFVNCFK---------LDKNELKEI 698
F + +N+LK +
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKSV 292
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 1e-12
Identities = 60/372 (16%), Positives = 105/372 (28%), Gaps = 66/372 (17%)
Query: 331 VHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHI 390
+ F + S EL+ G P NLV + L+ I
Sbjct: 62 IRRFPKVRSVELK-----GKP------HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110
Query: 391 NLSHSEHLTKIPDLSLA------TNLESLNFQGCTCLLETHSSIQYL----NKLVVLNLK 440
L + D L N + L C + + + L L+L+
Sbjct: 111 RLKRM----VVTDDCLELIAKSFKNFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLR 164
Query: 441 HCR----SLTSLST-SIHLGSLKKLILSGCSN------LMSFPELSCNIEELSLDGTA-I 488
S LS SL L +S ++ L N++ L L+ +
Sbjct: 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224
Query: 489 QEFPSSIERLSSLILLNLGNCLR------LEGLPSKICKLKSLERLNLAEALKELKAEGI 542
++ + ++R L L G GL + K L L+
Sbjct: 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG--------FWDA 276
Query: 543 AIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRL----TDCGIIELP 598
+P+ + L L+ Q L+ + L L + D G+ L
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSY--ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334
Query: 599 ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIE--- 655
L R + + F P + L S+ C +L S+ +++
Sbjct: 335 STCKDL--RELRVFPSEPFVMEPNVALTEQGLVSVS-MGCPKLESVLYFCRQMTNAALIT 391
Query: 656 -AHCCSSLEALS 666
A ++
Sbjct: 392 IARNRPNMTRFR 403
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 50/339 (14%), Positives = 100/339 (29%), Gaps = 51/339 (15%)
Query: 349 GCP-LKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLA 407
C LK L +L ++ S L +L +N+S +++ +L
Sbjct: 154 TCRNLKEL-------DLRESDVDDVSGHWLSHFPDTYTSLVSLNIS--CLASEVSFSALE 204
Query: 408 ------TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHL-----GS 456
NL+SL L + + +Q +L L + L G
Sbjct: 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264
Query: 457 LKKLILSGCSN-----LMSFPELSCNIEELSLDGTAIQ--EFPSSIERLSSLILLNLGNC 509
+ LSG + L + + + L+L +Q + + + L L + +
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324
Query: 510 LRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE 569
+ GL K L L + + + +A+ E ++ +L + C +
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ-GLVSVSMGCPKLESVLYFCRQ 383
Query: 570 --QMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQL 627
L+ I+ ++T RL + + ++
Sbjct: 384 MTNAALIT-IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-----------C 431
Query: 628 SHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALS 666
L L +S + +E LS
Sbjct: 432 KDLRRLSLSGLLTDKVFEYI--------GTYAKKMEMLS 462
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 47/327 (14%), Positives = 97/327 (29%), Gaps = 57/327 (17%)
Query: 378 WKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL----LETHSSIQYLNK 433
W ++R + + + + ++ + + S+ +G L Y+
Sbjct: 37 WYEIERWC-RRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYP 95
Query: 434 LVVLNLKHCRSLTSLSTS-------------IHLGSLKKLILSGCSN-----LMSFPELS 475
+ L + + K L+LS C L +
Sbjct: 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155
Query: 476 CNIEELSLDGT--------AIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLER 527
N++EL L + + FP + L SL + L + + L + + +L+
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 528 LNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYL 587
L L A+ + + L+ LG + + + + L G L L
Sbjct: 216 LKLNRAV-----PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270
Query: 588 ----RLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHS 643
+ + +L++ L L +++L + C +L
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTT---LNLSYATV--QSYDLVKL-------LCQCPKLQR 318
Query: 644 LPELPCDLSDIE----AHCCSSLEALS 666
L + + D A C L L
Sbjct: 319 L-WVLDYIEDAGLEVLASTCKDLRELR 344
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 52/245 (21%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHN-----FRGLESTELRYLQWHGCPLKSLS 356
+ A +F ++H L + N + F GL S L L+ L +
Sbjct: 89 MIQADTFRHLHHLEVLQLGR-------NSIRQIEVGAFNGLAS--LNTLELFDNWLTVIP 139
Query: 357 SKI--PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSLATNLESL 413
S L L + ++ I+ + R+ +L ++L + L I + +
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-------- 191
Query: 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMS--- 470
F+G L L LNL C + + L L++L +SG N
Sbjct: 192 -FEG-------------LFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSG--NHFPEIR 234
Query: 471 ---FPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKICK-LKSL 525
F LS ++++L + + + + + L+SL+ LNL + L LP + L+ L
Sbjct: 235 PGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYL 292
Query: 526 ERLNL 530
L+L
Sbjct: 293 VELHL 297
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 9e-11
Identities = 63/261 (24%), Positives = 92/261 (35%), Gaps = 64/261 (24%)
Query: 434 LVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGC--SNLM--SFPELSCNIEELSLDGTA 487
LNL + + HL L+ L L + +F L+ ++ L L
Sbjct: 77 TRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNW 134
Query: 488 IQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKI-CKLKSLERLNLAEALKELKAEGIAIR 545
+ PS E LS L L L N +E +PS ++ SL RL+L E
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGE------------- 180
Query: 546 EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLS 605
LK L +S +F GL +L YL L C I ++P L L
Sbjct: 181 --------LKKLEYISEGAFE-------------GLFNLKYLNLGMCNIKDMPN-LTPLV 218
Query: 606 SRSILLLEKNNFERIPESIIQ-LSHLFSLGISHC----------ERLHSLPELPCDLSD- 653
L + N+F I LS L L + + + L SL EL +L+
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL--NLAHN 276
Query: 654 ----IEAHCCSSLEALSGLSI 670
+ + L L L +
Sbjct: 277 NLSSLPHDLFTPLRYLVELHL 297
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 5e-12
Identities = 46/264 (17%), Positives = 89/264 (33%), Gaps = 63/264 (23%)
Query: 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT---SLSTSI-HLGSLKKLILSGCSNLM 469
+ G C + ++ L+L +L + +S+ +L L L + G +NL+
Sbjct: 37 TWLGVLC-----DTDTQTYRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 470 -SFPE----LSCNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLRLEG-LPSKICKL 522
P L+ + L + T + P + ++ +L+ L+ L G LP I L
Sbjct: 91 GPIPPAIAKLT-QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSL 148
Query: 523 KSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGR---LSFESFMCHEQMGLLLPIS 578
+L + + G +P S L +S +P +
Sbjct: 149 PNLVGITFDGNRI-----SG----AIPDSYGSFSKLFTSMTISRNRLTGK------IPPT 193
Query: 579 FGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE------------------- 618
F +L ++ L+ + + G + + L KN+
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253
Query: 619 -----RIPESIIQLSHLFSLGISH 637
+P+ + QL L SL +S
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSF 277
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 2e-11
Identities = 54/339 (15%), Positives = 99/339 (29%), Gaps = 67/339 (19%)
Query: 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKI 401
L L H L+ L N E S K L + +L + + E L +
Sbjct: 184 LHELAQHNTSLEVL-------NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV 236
Query: 402 PDLSLATNLESLN---FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLK 458
A NLE + E + ++ + KL L L + ++
Sbjct: 237 GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296
Query: 459 KLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSK 518
KL L + + I++ +L +L N + GL
Sbjct: 297 KLDLLYALLETE-------------------DHCTLIQKCPNLEVLETRNVIGDRGLEVL 337
Query: 519 ICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS 578
K L+RL + G E + L+ ++
Sbjct: 338 AQYCKQLKRLRIER--------------------GADEQGMEDEEGLVSQRG---LIALA 374
Query: 579 FGLTSLTYLRL-----TDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSL 633
G L Y+ + T+ + + L L ++LL + ERI + L +
Sbjct: 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL--DREERITDLP--LDNGVRS 430
Query: 634 GISHCERLHSLPELPC--DLSDIE----AHCCSSLEALS 666
+ C++L L+D+ ++ +
Sbjct: 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 56/373 (15%), Positives = 117/373 (31%), Gaps = 32/373 (8%)
Query: 289 EGISLDMSKVKEIHLNAGS--FTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQ 346
E ++ M++ +I N L K E V LE L
Sbjct: 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN 254
Query: 347 WHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTK--IPDL 404
+ + + P L L + + ++ ++ ++L ++ T+ +
Sbjct: 255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI 314
Query: 405 SLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKL--IL 462
NLE L + QY +L L ++ + L S + L +
Sbjct: 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374
Query: 463 SGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRL------EGLP 516
GC L + + + +++ + ++ L L+ L R+ G+
Sbjct: 375 QGCQELEYM-AVYVS----DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429
Query: 517 SKICKLKSLERLNLAEALKELKAEGIAIREVPSSIA-CLKNLGRLSFESFMCHEQMGLLL 575
S + K L R L G+ S I N+ + E L+
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGL------SYIGQYSPNVRWMLLGY--VGESDEGLM 481
Query: 576 PISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERIPESIIQLS----H 629
S G +L L + C E + + +L S L ++ + ++Q++ +
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541
Query: 630 LFSLGISHCERLH 642
+ + ++
Sbjct: 542 IELIPSRRVPEVN 554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 5e-09
Identities = 47/323 (14%), Positives = 87/323 (26%), Gaps = 50/323 (15%)
Query: 366 SLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETH 425
+ M + +R NL+ + L +L +
Sbjct: 54 HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAA---MFNLIPENWGGYVTPWVTEI--- 107
Query: 426 SSIQYLNKLVVLNLKHC----RSLTSLSTSIHLGSLKKLILSGCSN-----LMSFPELSC 476
L +L ++ + L L+ + L+ L L CS L+S
Sbjct: 108 --SNNLRQLKSVHFRRMIVSDLDLDRLAKA-RADDLETLKLDKCSGFTTDGLLSIVTHCR 164
Query: 477 NIEELSLDGT--------AIQEFPSSIERLSSLILLNLGNC-LRLEGLPSKICKLKSLER 527
I+ L ++ + + E L L + + L + +SL
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224
Query: 528 LNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYL 587
+ + + E + + + A L+ S + + + L L L
Sbjct: 225 VKVGD------FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278
Query: 588 RLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647
+ + L Q+ L+ E L I C L L E
Sbjct: 279 YMGPNEMPILFPFAAQIRK-----LDLLYALLETEDHCTL-------IQKCPNLEVL-ET 325
Query: 648 PCDLSDIE----AHCCSSLEALS 666
+ D A C L+ L
Sbjct: 326 RNVIGDRGLEVLAQYCKQLKRLR 348
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 59/336 (17%), Positives = 109/336 (32%), Gaps = 51/336 (15%)
Query: 350 CPLKSLSSKIP--PENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSEHLTKIPDLSL 406
C + L +P P ++ +++ +SI +L + RL +L+ + + I + +
Sbjct: 17 CINRGLHQ-VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 407 A--TNLESLNFQGCTCLLETHSSIQY--------LNKLVVLNLKHCR-SLTSLSTSI--H 453
++L L ++ L L VL L C LS +
Sbjct: 76 RGLSSLIILKLD--------YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 454 LGSLKKLILSGCSNLMS------FPELSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNL 506
L SL+ L+L +N+ F + L L ++ L
Sbjct: 128 LTSLEMLVLRD-NNIKKIQPASFFLNMR-RFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185
Query: 507 GNC------LRLEGLPSKIC----KLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLK 555
+ L + C K S+ L+L+ KE A+ + I L
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Query: 556 NLGRLSFESFMCHEQMGLLLPISF---GLTSLTYLRLTDCGIIELPECL-GQLSSRSILL 611
+ S H +F + + L+ I L + + + L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305
Query: 612 LEKNNFERIPESI-IQLSHLFSLGISHCERLHSLPE 646
L +N +I ++ L+HL L +S L S+
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS 340
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 62/374 (16%), Positives = 111/374 (29%), Gaps = 62/374 (16%)
Query: 302 HLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-- 359
LN SF+ + L+F K G + + FRGL + L L+ L +
Sbjct: 44 ELNETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGL--SSLIILKLDYNQFLQLETGAFN 100
Query: 360 PPENLVSLEMPHSSIKQLW--KGV-QRLVNLKHINLSHSE-----------HLTKIPDLS 405
NL L + ++ + L +L+ + L + ++ + L
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
Query: 406 LATN----LESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLI 461
L N + + T + L +N + S+ L
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSS-ITLQDMNEYWLGWEKCGNP-FKNTSITTLD 218
Query: 462 LSGCSNLMSFPELSCN-IEELSLDGTAIQEFPSSIERLSSLILLNLGNC----------- 509
LSG S + + I + + + + N
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278
Query: 510 -LRLEG-----LPSKICK-LKSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGRLS 561
L L + LE+L L I ++ + L +L +L+
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTL---------AQNEINKIDDNAFWGLTHLLKLN 329
Query: 562 FESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPECL-GQLSSRSILLLEKNNFER 619
+ +G + F L L L L+ I L + L + L L+ N +
Sbjct: 330 ----LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385
Query: 620 IPESIIQLSHLFSL 633
+P+ I L SL
Sbjct: 386 VPDGI--FDRLTSL 397
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 47/215 (21%), Positives = 74/215 (34%), Gaps = 22/215 (10%)
Query: 465 CSN--LMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKIC- 520
C N L PEL ++ + L +I E S RL L L + + +
Sbjct: 17 CINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76
Query: 521 KLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF 579
L SL L L +L+ + L NL L+ C+ +L F
Sbjct: 77 GLSSLIILKLDYNQFLQLE---------TGAFNGLANLEVLTLTQ--CNLDGAVLSGNFF 125
Query: 580 -GLTSLTYLRLTDCGIIEL-PECL-GQLSSRSILLLEKNNFERIPESIIQLSHLFSLGIS 636
LTSL L L D I ++ P + +L L N + I E L + +
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED--LLNFQGKHFT 183
Query: 637 HCERLHSLPELPCDLSDIEAHCCSSLEALSGLSIL 671
RL S+ + + C + + ++ L
Sbjct: 184 LL-RLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 39/202 (19%), Positives = 85/202 (42%), Gaps = 28/202 (13%)
Query: 352 LKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHS----EHLTKIPDLSLA 407
++ ++ + +++ P S + Q ++H++LS+S L I LS
Sbjct: 60 HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQC 117
Query: 408 TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI---HLGSLKKLILSG 464
+ L++L+ +G +++ + LV LNL C + + L +L LS
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177
Query: 465 CSNL------MSFPELSCNIEELSLDG-------TAIQEFPSSIERLSSLILLNLGNCLR 511
C + ++ +S I +L+L G + + + R +L+ L+L + +
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVM 234
Query: 512 L--EGLPSKICKLKSLERLNLA 531
L + + +L L+ L+L+
Sbjct: 235 LKNDCF-QEFFQLNYLQHLSLS 255
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 44/255 (17%), Positives = 87/255 (34%), Gaps = 45/255 (17%)
Query: 431 LNKLVVLNLKHCRSLTSLSTSIHLG--SLKKLILSGC----SNLMSFPELSCNIEELSLD 484
L V+ + RS + H ++ + LS S L ++ LSL+
Sbjct: 67 LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126
Query: 485 GTAIQ-EFPSSIERLSSLILLNLGNCLRL--EGLPSKICKLKSLERLNLAEALKELKAEG 541
G + +++ + S+L+ LNL C L + + L+ LNL+ + +
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC-FDFTEKH 185
Query: 542 IAIREVPSSIACLKNLGRLSFESFMCHEQMG--LLLPISFGLTSLTYLRLTDCGIIELPE 599
+ + + + + +L+ + + L + +L +L L+D
Sbjct: 186 VQV----AVAHVSETITQLNLSG--YRKNLQKSDLSTLVRRCPNLVHLDLSDSV------ 233
Query: 600 CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCER-----LHSLPELPCDLSDI 654
L + + QL++L L +S C L L E+P L +
Sbjct: 234 ---MLKNDCF------------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT-LKTL 277
Query: 655 EAHCCSSLEALSGLS 669
+ L L
Sbjct: 278 QVFGIVPDGTLQLLK 292
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 24/209 (11%)
Query: 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHS 395
+ + HG + + + NL L + + + ++ L L+ ++LS +
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 396 EHLTKIPDLSLA--TNLESLNFQGCTCLLET--HSSIQYLNKLVVLNLKHCRSLTSLSTS 451
L + + L +L+ C L+ + L L L L+ L +L
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDR--CGLQELGPGLFRGLAALQYLYLQDNA-LQALPDD 147
Query: 452 I--HLGSLKKLILSGCSNLMS------FPELSCNIEELSLDGTAIQEFPSSI-ERLSSLI 502
LG+L L L G N +S F L +++ L L + L L+
Sbjct: 148 TFRDLGNLTHLFLHG--NRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 503 LLNLGNCLRLEGLPSKI-CKLKSLERLNL 530
L L L LP++ L++L+ L L
Sbjct: 205 TLYLFAN-NLSALPTEALAPLRALQYLRL 232
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 54/236 (22%), Positives = 84/236 (35%), Gaps = 29/236 (12%)
Query: 394 HSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI- 452
+ L +P + + + G +S + L +L L L + +
Sbjct: 19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAF 76
Query: 453 -HLGSLKKLILSGCSNLMS-----FPELSCNIEELSLDGTAIQEFPSSI-ERLSSLILLN 505
L L++L LS + L S F L + L LD +QE + L++L L
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 506 LGNCLRLEGLPSKI-CKLKSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGRLSFE 563
L + L+ LP L +L L L G I VP L +L RL
Sbjct: 136 LQDN-ALQALPDDTFRDLGNLTHLFLH---------GNRISSVPERAFRGLHSLDRLL-- 183
Query: 564 SFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNF 617
+ ++ + P +F L L L L + LP L L + L L N +
Sbjct: 184 --LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 23/191 (12%)
Query: 465 CSN--LMSFPE-LSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKI- 519
C L + P + + + L G I P++ +L +L L + L + +
Sbjct: 18 CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAF 76
Query: 520 CKLKSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGRLSFESFMCHEQMGLLLPIS 578
L LE+L+L++ + +R V + L L L + + L P
Sbjct: 77 TGLALLEQLDLSDNAQ--------LRSVDPATFHGLGRLHTL----HLDRCGLQELGPGL 124
Query: 579 F-GLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPESIIQ-LSHLFSLGI 635
F GL +L YL L D + LP+ L + + L L N +PE + L L L +
Sbjct: 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184
Query: 636 SHCERLHSLPE 646
R+ +
Sbjct: 185 HQN-RVAHVHP 194
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 35/228 (15%), Positives = 81/228 (35%), Gaps = 24/228 (10%)
Query: 49 RKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKN-CGVDTIYEVKELF- 106
+ L++ DDV ++ ++++T RDK V + G + V+
Sbjct: 235 HPRSLLILDDVWDPWVLKAFD-------NQCQILLTTRDKSVTDSVMGPKHVVPVESGLG 287
Query: 107 DDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLC----------GR 156
+ + S + N ++ IIK KG PL + ++G L +
Sbjct: 288 REKGLEILSLFV---NMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQ 344
Query: 157 RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGED--KDCVIKFL 214
I+K + + + + +S + L ++ ++ + D++ K +
Sbjct: 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
Query: 215 DGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKD 262
D E + V+K L+ N L ++ + + +++
Sbjct: 405 DLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 42/255 (16%), Positives = 74/255 (29%), Gaps = 41/255 (16%)
Query: 465 CS--NLMSFPE-LSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKI- 519
C + P L N EL T ++ L + + LE + + +
Sbjct: 16 CQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75
Query: 520 CKLKSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGRLSFESFMCHEQMGLLLPIS 578
L L + + +A + + L NL L + + + L +
Sbjct: 76 SNLPKLHEIRIEKANN--------LLYINPEAFQNLPNLQYLL----ISNTGIKHLPDVH 123
Query: 579 F-GLTSLTYLRLTD-CGIIELPE-CLGQLSSRSILL-LEKNNFERIPESIIQLSHLFSLG 634
L + D I + LS S++L L KN + I S + L L
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183
Query: 635 ISHCERLHSLPE-----LPC---------DLSDIEAHCCSSLEALSGLSILFTQTSWNSQ 680
+S L LP + + ++ +L+ L S T +
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS-----TYNLKK 238
Query: 681 FFYFVNCFKLDKNEL 695
L + L
Sbjct: 239 LPTLEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 39/181 (21%)
Query: 384 LVNLKHINLSHSEHLTKIPD-----------LSLATN----LESLNFQGCTCL----LET 424
L L I + + +L I L ++ L ++ ++
Sbjct: 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137
Query: 425 HSSIQYL---------NKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPEL 474
+ +I + + V+L L + + S + L +L LS +NL P
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPND 196
Query: 475 S----CNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKICKLKSLERLN 529
L + T I PS E L L + N L+ LP+ + KL +L +
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT-LEKLVALMEAS 252
Query: 530 L 530
L
Sbjct: 253 L 253
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 29/223 (13%)
Query: 330 KVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVN--- 386
+V GL+ L L+ G L P +L L + + S + L
Sbjct: 90 RVLGISGLQELTLENLEVTGTAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLK 148
Query: 387 --LKHINLSHSEHLTKIPD--LSLATNLESLN-----FQGCTCLLETHSSIQYLNKLVVL 437
LK ++++ + H + + L +L+ G L+ ++ L VL
Sbjct: 149 PGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK-FPTLQVL 206
Query: 438 NLKHCRSLTSLSTSI-----HLGSLKKLILSGCSNLMSFPELSC----NIEELSLDGTAI 488
L++ + + S L+ L LS S + SC + L+L T +
Sbjct: 207 ALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265
Query: 489 QEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLA 531
++ P + + L +L+L RL+ PS +L + L+L
Sbjct: 266 KQVPKGL--PAKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLK 304
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 52/309 (16%), Positives = 86/309 (27%), Gaps = 76/309 (24%)
Query: 337 LESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSE 396
++S L+ L + S+I L L + L L NL +
Sbjct: 65 IKSLSLKRLTVRAA---RIPSRILFGALRVLGIS------------GLQELTLENLEVTG 109
Query: 397 HLTKIPDLSLATNLESLNFQGCTCLLE----THSSIQYLNKLVVLNLKHCRSLT-SLSTS 451
+ +L LN + + L VL++ SL S
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169
Query: 452 IHLGSLKKLILSG--CSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNC 509
+L L LS C P L L L N G
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALC---------------PLKFPTLQVLALRNAGME 214
Query: 510 LRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE 569
+ L+ L+L+ +R+ + +C
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNS---------LRDAAGAPSCD--------------- 250
Query: 570 QMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQ-LSSRSILLLEKNNFERIPESIIQLS 628
+ L L L+ G+ ++P+ L L S+L L N +R P S +L
Sbjct: 251 ----------WPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDRNP-SPDELP 296
Query: 629 HLFSLGISH 637
+ +L +
Sbjct: 297 QVGNLSLKG 305
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 45/314 (14%), Positives = 101/314 (32%), Gaps = 37/314 (11%)
Query: 331 VHNFRGLESTELRYLQWH-GCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKH 389
V LE + ++ + C N + ++I+ W R++ L
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL-- 243
Query: 390 INLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLS 449
+ + + ++ ++ QG + S L L + +
Sbjct: 244 VWHTTVWYF----------SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS-DVFGFPQ 292
Query: 450 TSI--HLGSLKKLILSGCSNLMSFPELSC----NIEELSLDGTAIQEFPSSI-ERLSSLI 502
+ I ++ + S L L + + L+ L
Sbjct: 293 SYIYEIFSNMNIKNFT-VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 503 LLNL-GNCLR-LEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRL 560
L L N L+ L + ++KSL++L++++ ++ E + K+L L
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-------SVSYDEKKGDCSWTKSLLSL 404
Query: 561 SFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERI 620
+ M + + + L L I +P+ + +L + L + N + +
Sbjct: 405 N----MSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 621 PESIIQ-LSHLFSL 633
P+ I L+ L +
Sbjct: 460 PDGIFDRLTSLQKI 473
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 54/361 (14%), Positives = 118/361 (32%), Gaps = 47/361 (13%)
Query: 333 NFRGLESTELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGVQRLVNLKHI 390
+ L ++LR L ++ L + + L L++ H+ + ++ VNLKH+
Sbjct: 40 DILSL--SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI--SCHPTVNLKHL 95
Query: 391 NLSHS-----------EHLTKIPDLSLATN-LESLNFQGCTCL------------LETHS 426
+LS + +++++ L L+T LE + L
Sbjct: 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155
Query: 427 SIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGT 486
+ L +L I S+K + SN+ E + LS+
Sbjct: 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK 215
Query: 487 AIQEFPSSIERLSSLI--------LLNLGNCLRLEGLPSKICKLKSLERLNLAE----AL 534
S L+++ +L L + KL+ + +L
Sbjct: 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275
Query: 535 KELKAEGIAIREVPSSIACL-KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCG 593
K L + + + + ++ ++F + + ++ +L ++
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335
Query: 594 IIELP-ECLGQLSSRSILLLEKNNFERIPESI---IQLSHLFSLGISHCERLHSLPELPC 649
+ + E G L+ L+L+ N + + + Q+ L L IS + + C
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 650 D 650
Sbjct: 396 S 396
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 29/225 (12%)
Query: 465 CS--NLMSFPE-LSCNIEELSLDGTAIQEFPSS-IERLSSLILLNLGNCLRLEGLPSKIC 520
S L+ P+ LS L++ I E +S I LS L +L + + R++ L +
Sbjct: 7 RSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVF 65
Query: 521 -KLKSLERLNLAE-ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS 578
+ LE L+L+ L ++ LK+L LSF +F L +
Sbjct: 66 KFNQELEYLDLSHNKLVKISCH---------PTVNLKHL-DLSFNAFDA-----LPICKE 110
Query: 579 FG-LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH 637
FG ++ L +L L+ + + + S +LL E L +
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE---- 166
Query: 638 CERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFF 682
LH + + I ++ L +I +F
Sbjct: 167 --SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 15/156 (9%)
Query: 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCP 351
L M+++KE+ A T M L+ + + K + +S L L
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-DCSWTKS--LLSLNMSSNI 410
Query: 352 LKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLA--TN 409
L + P + L++ + IK + K V +L L+ +N++ + L +PD T+
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTS 469
Query: 410 LESLNFQG----CTCLLETHSSIQYLNKLVVLNLKH 441
L+ + C+C I YL++ + N +
Sbjct: 470 LQKIWLHTNPWDCSC-----PRIDYLSRWLNKNSQK 500
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 49/271 (18%), Positives = 83/271 (30%), Gaps = 48/271 (17%)
Query: 269 LWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENV 328
W Y + N T TE I+ S E L + ++ F +
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYS---ETALKSLMIEHVKNQVFLFSKEAL----- 324
Query: 329 NKVHNFRGLESTELRYLQWHGCPLKSLSSKIP--PENLVSLEMPHSSIKQLWKGV-QRLV 385
+ ++ L + P P + L + L
Sbjct: 325 -----YSVFAEMNIKMLSISD--TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLK 377
Query: 386 NLKHINLSHSEHLTKIPDLSLA-TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS 444
L+ + L + L ++L N+ SL L LN
Sbjct: 378 RLQTLILQRN-GLKNFFKVALMTKNMSSLETLD--------------VSLNSLNSHAYDR 422
Query: 445 LTSLSTSIHLGSLKKLILSGCSNLMS---FPELSCNIEELSLDGTAIQEFPSSIERLSSL 501
+ S+ L LS SN+++ F L ++ L L I P + L +L
Sbjct: 423 TCAW-----AESILVLNLS--SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQAL 475
Query: 502 ILLNL-GNCLRLEGLPSKICK-LKSLERLNL 530
LN+ N +L+ +P + L SL+ + L
Sbjct: 476 QELNVASN--QLKSVPDGVFDRLTSLQYIWL 504
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 58/361 (16%), Positives = 117/361 (32%), Gaps = 53/361 (14%)
Query: 333 NFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHIN 391
+ L +ELR L+ ++SL + LE S +L + +L+H++
Sbjct: 71 DISFL--SELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNRLQNISCCPMASLRHLD 127
Query: 392 LSHS-----------EHLTKIPDLSLATN-LESLNFQGCT-------------------- 419
LS + +LTK+ L L+ L+
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187
Query: 420 ----CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELS 475
+ T + + +++ S+ +L + L ++K + + EL+
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL-GHLQLSNIKLNDENCQRLMTFLSELT 246
Query: 476 CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-AL 534
L++ I+ +L L + L I + E +E AL
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL--TITERIDREEFTYSETAL 304
Query: 535 KELKAEGIAIREVPSSIACL-KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCG 593
K L E + + S L ++ + + + + +S T+L T
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364
Query: 594 IIELPE----CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPC 649
+ L +L L+L++N + + + ++ SL L+SL
Sbjct: 365 FTDSVFQGCSTLKRL---QTLILQRNGLKNFFKVALMTKNMSSLETLDV-SLNSLNSHAY 420
Query: 650 D 650
D
Sbjct: 421 D 421
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 69/402 (17%), Positives = 133/402 (33%), Gaps = 58/402 (14%)
Query: 291 ISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGC 350
+ L +K +++ L ++H S++ + + + + +T + +L +H
Sbjct: 151 LGLSAAKFRQLDL--LPVAHLHLSCILLDLVSYHIKG-GETESLQIP-NTTVLHLVFHPN 206
Query: 351 PLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNL 410
L S+ + L L++ S+IK + QRL+ SE L++
Sbjct: 207 SLFSVQVNMSVNALGHLQL--SNIKLNDENCQRLMTF------LSELTRGPTLLNVTLQH 258
Query: 411 ESLNFQGCTCLLET--HSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNL 468
++ L + ++YLN + NL + + +LK L++ N
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLN---IYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315
Query: 469 -------MSFPELSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKIC 520
+ + + L + SS LN + + +
Sbjct: 316 VFLFSKEALYSVFA-EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374
Query: 521 KLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF- 579
LK L+ L L + ++ KN+ L + L ++
Sbjct: 375 TLKRLQTLIL---------QRNGLKNFFKVALMTKNMSSLETLDV----SLNSLNSHAYD 421
Query: 580 ----GLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLG 634
S+ L L+ + CL +L L N IP+ + L L L
Sbjct: 422 RTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDVTHLQALQELN 479
Query: 635 ISHCERLHSLPELPCD----LSDIEAH-----C-CSSLEALS 666
++ +L S+P+ D L I H C C + LS
Sbjct: 480 VAS-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 2e-07
Identities = 44/351 (12%), Positives = 99/351 (28%), Gaps = 33/351 (9%)
Query: 252 REIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNM 311
R ++ + D + E +V + T +L + + +
Sbjct: 233 RWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDG 292
Query: 312 HKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPEN---LVSLE 368
+ ++N C L + + L
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352
Query: 369 MPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSI 428
S+++ L + K L E K L++ + +L+ ET
Sbjct: 353 RCELSVEKSTVLQSELESCK--ELQELEPENKWCLLTIILLMRALDPL--LYEKETLQYF 408
Query: 429 QYLNKLVVLNLKHCRSLTSLSTSIHLGSL------KKLILSGCSNLMSFPELS--CNIEE 480
L + + + L S + + L L+ +L L +
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTH 467
Query: 481 LSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLA----EALKE 536
L L ++ P ++ L L +L + LE + + L L+ L L +
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNRLQQSAA 525
Query: 537 LKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYL 587
++ + L L+ + ++ G+ ++ L S++ +
Sbjct: 526 IQ-----------PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 5e-05
Identities = 43/287 (14%), Positives = 80/287 (27%), Gaps = 32/287 (11%)
Query: 385 VNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS 444
L +++ L L + L+ + T S +L L +L
Sbjct: 255 ACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLP 314
Query: 445 LTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIE---ELSLDGTAIQEFPSSIERLSSL 501
+ +K + + S E L S +E L
Sbjct: 315 QHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKEL 374
Query: 502 ILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLG--R 559
L N L + I +++L+ L + E + LK + R
Sbjct: 375 QELEPENKWCLLTI---ILLMRALDPLLYEK-------------ETLQYFSTLKAVDPMR 418
Query: 560 LSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFER 619
++ + + + + + L L + L L QL + L L N
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA 477
Query: 620 IPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALS 666
+P ++ L L L S L ++ + L+ L
Sbjct: 478 LPPALAALRCLEVLQASDN-ALENVDGV---------ANLPRLQELL 514
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 46/217 (21%), Positives = 71/217 (32%), Gaps = 54/217 (24%)
Query: 445 LTSLSTSI--HLGSLKKLILSGCSNLMSFPE-----LSCNIEELSLDGTAIQEFPSSI-E 496
L L + L+ L LS C + + + LS ++ L L G IQ
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFS 97
Query: 497 RLSSLILLNLGNCLRLEGLPSKI-CKLKSLERLNLAE-ALKELKAEGIAIREVPSSIACL 554
LSSL L L L + LK+L+ LN+A ++ K
Sbjct: 98 GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY------------ 144
Query: 555 KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC----LGQLSSRSI- 609
F LT+L +L L+ I + L Q+ ++
Sbjct: 145 -------FS----------------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 610 LLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE 646
L L N I + L L + +L S+P+
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPD 217
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 48/237 (20%), Positives = 89/237 (37%), Gaps = 32/237 (13%)
Query: 394 HSEHLTKIPDLSLATNLESLNFQG--CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS 451
+ KIPD +L + ++L+ L S +L VL+L C + ++
Sbjct: 15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCE-IQTIEDG 70
Query: 452 I--HLGSLKKLILSGCSNLMS------FPELSCNIEELSLDGTAIQEFPSSI-ERLSSLI 502
L L LIL+G N + F LS ++++L T + + L +L
Sbjct: 71 AYQSLSHLSTLILTG--NPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 503 LLNLGNCLRLEGLPSK--ICKLKSLERLNLAEALKELKAEGIAIREVPSSI-ACLKNLGR 559
LN+ + ++ L +LE L+L+ I+ + + L +
Sbjct: 128 ELNVAH-NLIQSFKLPEYFSNLTNLEHLDLS---------SNKIQSIYCTDLRVLHQMPL 177
Query: 560 LSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKN 615
L+ + M + P +F L L L + +P+ +L+S + L N
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 45/190 (23%)
Query: 465 CSN--LMSFPE-LSCNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPSKIC 520
C P+ L + + L L ++ S L +L+L C ++ +
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAY 72
Query: 521 -KLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF 579
L L L L I+ + F
Sbjct: 73 QSLSHLSTLILTGNP---------IQSLALGA----------FS---------------- 97
Query: 580 GLTSLTYLRLTDCGIIELPECL-GQLSSRSILLLEKNNFERIPESII--QLSHLFSLGIS 636
GL+SL L + + L G L + L + N + L++L L +S
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 637 HCERLHSLPE 646
++ S+
Sbjct: 158 SN-KIQSIYC 166
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 9/157 (5%)
Query: 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE 423
V L I+++ + L KH+ LS + + KI LS NL L+ L++
Sbjct: 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGR--NLIK 83
Query: 424 THSSIQYL-NKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC--SNLMSFPELSC--NI 478
++ + + L L + + + + SLS L +L+ L +S +N +L+ +
Sbjct: 84 KIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142
Query: 479 EELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGL 515
E+L L G + S + + L+ L
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 43/205 (20%), Positives = 65/205 (31%), Gaps = 46/205 (22%)
Query: 436 VLNLKHCRSLTSLSTSI--HLGSLKKLILSGC--SNLMSFPELSCNIEELSLDGTAIQEF 491
+L+L L + S + L +L L + L L + L L +Q
Sbjct: 35 ILHL-SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP-VLGTLDLSHNQLQSL 92
Query: 492 PSSIERLSSLILLNLGNCLRLEGLPSKI-CKLKSLERLNLAE-ALKELKAEGIAIREVPS 549
P + L +L +L++ RL LP L L+ L L LK L P
Sbjct: 93 PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL----------PP 141
Query: 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRS 608
+ L L L + + ELP L L +
Sbjct: 142 GL----------LT----------------PTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 609 ILLLEKNNFERIPESIIQLSHLFSL 633
LLL++N+ IP+ L
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLPFA 200
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 14/120 (11%)
Query: 356 SSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLT-----KIPDLS-LAT 408
+ + + +++ S I + ++ L ++ I L ++ ++ L L
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 409 NLESLNFQGCTCLLETHSSIQYL---NKLVVLNLKHCRSLT--SLSTSIHLGSLKKLILS 463
++ + C + T I L L L L + SL L L
Sbjct: 115 SMLEMEIISCGNV--TDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 33/136 (24%)
Query: 409 NLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT-----SLSTSIHLG-SLKKLIL 462
+++++ + ++ L + + L C + LS +L S+ ++ +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 463 SGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKL 522
C N+ + + ++ +L L L + ++
Sbjct: 122 ISCG----------NVTDKGI---------IALHHFRNLKYLFLSDLPGVKE-------- 154
Query: 523 KSLERLNLAEALKELK 538
K +L L+
Sbjct: 155 KEKIVQAFKTSLPSLE 170
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 40/270 (14%), Positives = 79/270 (29%), Gaps = 67/270 (24%)
Query: 404 LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-IHLGSLKKLIL 462
L +++ + G T + ++L++ + + L S I G +K I
Sbjct: 28 LLEDDSVKEIVLSGNTI---GTEAARWLSEN----IASKKDLEIAEFSDIFTGRVKDEIP 80
Query: 463 SGCSNLMSFPELSCNIEELSLDGTAI-----QEFPSSIERLSSLILLNLGNC-------- 509
L+ + + L A + + + + L L L N
Sbjct: 81 EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140
Query: 510 -----LRLEGLPSKICKLKSLERLNL-------------AEALKELK------------- 538
L+ + K L + A+ + +
Sbjct: 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200
Query: 539 AEGI--AIREVPSSIACLKNLGRLSFESF--MCHEQMGLLLPISFGLTSLTYLRLTDCGI 594
EGI + E + LK L L +F + + + L +L L L DC +
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLD-LQDNTFTHLGSSALAIALK---SWPNLRELGLNDCLL 256
Query: 595 -----IELPECLGQLSSRSI--LLLEKNNF 617
+ + +L + + L L+ N
Sbjct: 257 SARGAAAVVDAFSKLENIGLQTLRLQYNEI 286
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 37/224 (16%)
Query: 443 RSLTSLSTSIHLGSLKKLILSGCSNLMS------FPELSCNIEELSLDGTAIQEFPSSI- 495
+ LT++ ++I KKL L SN +S F L+ + L L+ +Q P+ I
Sbjct: 26 KKLTAIPSNI-PADTKKLDLQ--SNKLSSLPSKAFHRLT-KLRLLYLNDNKLQTLPAGIF 81
Query: 496 ERLSSLILLNLGNCLRLEGLPSKI-CKLKSLERLNLAEALKELKAEGIAIREVPSSI-AC 553
+ L +L L + + +L+ LP + +L +L L L + ++ +P +
Sbjct: 82 KELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRL---------DRNQLKSLPPRVFDS 131
Query: 554 LKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIELPECL-GQLSSRSILL 611
L L LS + + ++ L F LTSL LRL + + +PE +L+ L
Sbjct: 132 LTKLTYLS----LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 612 LEKNNFERIPESII-QLSHLFSLGISHCERLHSLPELPCDLSDI 654
L+ N +R+PE L L L +L P C + I
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKML------QLQENP-WDCTCNGI 224
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 334 FRGLESTELRYLQWHGCPLKSLSSKIPPE------NLVSLEMPHSSIKQLWKGV-QRLVN 386
L T L L L I E NL L++ + + L + + L
Sbjct: 60 PTRL--TNLHSLLLSHNHLNF----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113
Query: 387 LKHINLSHSEHLTKIPDLSLA--TNLESLNFQGC--TCL-LETHSSIQYLNKLVVLNLKH 441
L+ + L ++ H+ + + L+ L + +E L KL++L+L
Sbjct: 114 LEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 442 CRSLTSLSTSI--HLGSLKKLILS 463
+ L L + L + K L
Sbjct: 173 NK-LKKLPLTDLQKLPAWVKNGLY 195
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 909 | |||
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.97 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.96 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.96 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.96 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.96 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.95 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.95 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.95 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.93 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.93 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.93 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.93 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.93 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.93 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.93 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 99.93 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.92 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.92 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.91 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.91 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.9 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.9 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.89 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.89 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 99.89 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.88 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.88 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.88 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.87 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.87 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.86 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.86 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.85 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.84 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.84 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.82 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.82 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.82 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.81 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.81 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.81 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.8 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.8 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.8 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.8 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.8 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.79 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.78 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.76 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.76 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.75 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.74 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.71 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.71 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.7 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.69 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.67 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.67 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.66 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.66 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.66 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.66 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.65 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.65 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.65 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.64 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.64 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.64 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.62 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.61 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.6 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.6 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.6 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.56 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.56 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.55 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.54 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.54 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.53 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.51 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.5 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.48 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.48 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.46 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.45 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.44 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.44 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.41 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.4 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.39 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.37 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.36 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.35 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.35 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.34 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.34 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.34 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.34 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.33 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.22 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.2 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.2 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.18 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.17 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.15 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.13 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.12 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.07 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.06 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.03 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.02 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.01 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.98 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.97 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.93 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.9 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.89 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.85 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.83 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.71 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.71 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.64 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.6 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.34 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.34 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.32 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.24 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 98.24 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 98.12 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.09 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.04 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.03 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.0 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 97.99 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.88 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.81 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.67 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.64 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 97.55 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 97.55 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.46 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.11 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.06 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.97 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.92 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.85 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.84 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.07 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.52 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 95.0 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.69 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 93.06 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 92.47 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 92.38 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 87.66 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 87.03 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 86.84 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 85.27 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 84.83 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 84.19 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 83.06 |
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=327.52 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=193.2
Q ss_pred ChHHHHHHHHHHHhcCCC-CcccCCc-----cchHHHHHhhCCC-eEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEe
Q 039311 13 GLAHLRQILLSAILDDGN-VSIGCPS-----IGLNFRSKRLSRK-KVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITA 85 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~-~~~~~~~-----~~~~~i~~~L~~k-r~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTT 85 (909)
++..++++|+.++..... ....+.+ .++..+++.|++| ||||||||||+.+++ .+.. .+||||||||
T Consensus 199 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTT 272 (549)
T 2a5y_B 199 STFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTT 272 (549)
T ss_dssp HHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEE
T ss_pred CHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEc
Confidence 688999999999974322 1223333 3488999999996 999999999999976 2222 2899999999
Q ss_pred CCchhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHH
Q 039311 86 RDKQVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWEST 164 (909)
Q Consensus 86 R~~~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~ 164 (909)
|++.|+..++ ...+|+|++|+++|||+||.++||+... .+++.+++++|+++|+|+||||+++|+.|+.++. +|...
T Consensus 273 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~ 350 (549)
T 2a5y_B 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQ 350 (549)
T ss_dssp SBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHH
T ss_pred CCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHH
Confidence 9999999886 4578999999999999999999997643 4688999999999999999999999999988753 33233
Q ss_pred HH-HHhcCCCcchhhhhhhcccCCChhhhhhhe-----------eeeeccCCCCHHHHHHHHHhc--CCCccc-------
Q 039311 165 IK-KIKRIPHVDIQKVLKVSFDGLDDEEQNLFL-----------DIASFFKGEDKDCVIKFLDGC--GFSAEI------- 223 (909)
Q Consensus 165 l~-~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl-----------~~a~f~~~~~~~~li~~w~~~--g~~~~~------- 223 (909)
+. .++.....++..+|++||++||.++|.||+ |||+||++++.+ +++|+|+ ||+...
T Consensus 351 l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 351 LNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTH
T ss_pred hHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHH
Confidence 33 344335677999999999999999999999 999999998655 8899999 885432
Q ss_pred ----chhHhhhccccEEeC----CeEEehHHHHHHHHHHhhhccc
Q 039311 224 ----GISVLVDKCLMVILN----NKIMMHDLLQEMGREIVRQESI 260 (909)
Q Consensus 224 ----~i~~L~~~~li~~~~----~~~~mhdll~e~~~~i~~~~~~ 260 (909)
++++|+++||++... .+|.|||++|++|++++.+++.
T Consensus 429 ~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 699999999999862 3699999999999999987754
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=305.31 Aligned_cols=320 Identities=15% Similarity=0.088 Sum_probs=213.9
Q ss_pred CCCCC-CCCccEEEeeCCCCCc------------------cCCCCC---CCCeeEEEcCCCCcc-ccccccccCCCCCEE
Q 039311 334 FRGLE-STELRYLQWHGCPLKS------------------LSSKIP---PENLVSLEMPHSSIK-QLWKGVQRLVNLKHI 390 (909)
Q Consensus 334 ~~~l~-~~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L 390 (909)
+..+. +++|++|++++|.+.. +|..+. +.+|++|++++|.+. .+|..++++++|++|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 33344 7788888888888877 777765 778888888887754 677778888888888
Q ss_pred ecCCCc-CCC-cCCC-CCcc------ccccccccccccccceecc--cccCCCcccEeccccccCccccCccccCCcCcE
Q 039311 391 NLSHSE-HLT-KIPD-LSLA------TNLESLNFQGCTCLLETHS--SIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKK 459 (909)
Q Consensus 391 ~Ls~~~-~l~-~~p~-l~~l------~~L~~L~L~~c~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 459 (909)
++++|. +.. .+|. ++.+ ++|++|++++|... .+|. .++.+++|++|++++|.....+|....+++|+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~ 357 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCE
Confidence 888887 544 4554 5544 78888888887655 7777 788888888888887654337773235778888
Q ss_pred EEccCCCCCcccCcc---ccC-cceeeccccCccccCcccccCC--CCCEEeccCCCCCCcCccccc-------CCCCCC
Q 039311 460 LILSGCSNLMSFPEL---SCN-IEELSLDGTAIQEFPSSIERLS--SLILLNLGNCLRLEGLPSKIC-------KLKSLE 526 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~---~~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~c~~l~~lp~~l~-------~L~~L~ 526 (909)
|++++|... .+|.. ..+ |+.|++++|.+..+|..++.++ +|+.|++++|...+.+|..+. .+++|+
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 888876543 56553 235 7788888888888887776654 788888888877777777676 666777
Q ss_pred eeeccc---------------ccccccccCcceeecCcccccc--------CCCCeeecCccccccccccccCccC--CC
Q 039311 527 RLNLAE---------------ALKELKAEGIAIREVPSSIACL--------KNLGRLSFESFMCHEQMGLLLPISF--GL 581 (909)
Q Consensus 527 ~L~l~~---------------~l~~L~l~~~~~~~lp~~i~~l--------~~L~~L~l~~~~~~~~~~~~~~~~~--~l 581 (909)
.|++.. +|+.|++++|.+..+|..+... ++|+.|++++|... ..+..+. .+
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~~~l 512 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT----KLSDDFRATTL 512 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC----BCCGGGSTTTC
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC----ccChhhhhccC
Confidence 777632 3555566666666665543322 26666666653222 1222333 56
Q ss_pred CCCCEEecCCCCCCCcccccCCCCCCcEEECC------CCCCe-ecchhhccCCCCCEEeecCCCCCcccCC-CCCCcCc
Q 039311 582 TSLTYLRLTDCGIIELPECLGQLSSRSILLLE------KNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE-LPCDLSD 653 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~------~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-l~~sL~~ 653 (909)
++|+.|+|++|.+..+|..+..+++|+.|+|+ +|++. .+|..+..+++|+.|+|++|.. +.+|. +.++|+.
T Consensus 513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~ 591 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISV 591 (636)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCE
T ss_pred CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCE
Confidence 66777777777666666666667777777763 34433 5666666677777777776643 66665 4566777
Q ss_pred eecccCc
Q 039311 654 IEAHCCS 660 (909)
Q Consensus 654 L~i~~C~ 660 (909)
|++++|+
T Consensus 592 L~Ls~N~ 598 (636)
T 4eco_A 592 LDIKDNP 598 (636)
T ss_dssp EECCSCT
T ss_pred EECcCCC
Confidence 7777664
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=299.93 Aligned_cols=350 Identities=20% Similarity=0.219 Sum_probs=227.7
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCC--CCCCCccEEEeeCCCCCccCC-----CCCCCCeeEEEcCCCCcccccc
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRG--LESTELRYLQWHGCPLKSLSS-----KIPPENLVSLEMPHSSIKQLWK 379 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~--l~~~~Lr~L~l~~~~l~~lp~-----~~~~~~L~~L~L~~~~i~~lp~ 379 (909)
.+.++++|++|++++|.+... .+.. ..+++|++|++++|.+...+. ...+.+|++|++++|.+.....
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFP-----GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECC-----SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred HHhCCCCCCEEECcCCccCCc-----CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 677788888888877654221 1111 126778888888877765543 2256677777777777765433
Q ss_pred ccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcE
Q 039311 380 GVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKK 459 (909)
Q Consensus 380 ~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 459 (909)
+..+++|++|++++|.+.+.+|.++.+++|++|++++|.....+|..++.+++|++|++++|.....+|.. .+++|++
T Consensus 196 -~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~ 273 (768)
T 3rgz_A 196 -VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQY 273 (768)
T ss_dssp -CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCE
T ss_pred -cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCE
Confidence 36778888888888877777777788888888888888777777777888888888888877644444443 6677777
Q ss_pred EEccCCCCCcccCccc----cCcceeeccccCcc-ccCcccccCCCCCEEeccCCCCCCcCccc-ccCCCCCCeeecc--
Q 039311 460 LILSGCSNLMSFPELS----CNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNLA-- 531 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~~----~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~-l~~L~~L~~L~l~-- 531 (909)
|++++|...+.+|... .+|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 7777766555555432 45666666666665 45556666666666666666555455544 5555555555551
Q ss_pred -----------------------c-----------------ccccccccCccee-ecCccccccCCCCeeecCccccccc
Q 039311 532 -----------------------E-----------------ALKELKAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQ 570 (909)
Q Consensus 532 -----------------------~-----------------~l~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~ 570 (909)
. +++.|+++++.+. .+|..+..+++|+.|++++| .+
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N---~l 430 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN---YL 430 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS---EE
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC---cc
Confidence 1 2444555555544 45666777777777777762 22
Q ss_pred cccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCCC-
Q 039311 571 MGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPEL- 647 (909)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l- 647 (909)
.+..+..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|..+..+++|+.|+|++|+....+|..
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 2333344566777777777777777 46777777777777777777777 66777777777777777777655566642
Q ss_pred --CCCcCceecccCccccccc
Q 039311 648 --PCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 648 --~~sL~~L~i~~C~~L~~l~ 666 (909)
.++|+.|++++|.-...+|
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECC
T ss_pred hcCCCCCEEECCCCcccCcCC
Confidence 4467777777775444444
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-29 Score=303.47 Aligned_cols=331 Identities=15% Similarity=0.093 Sum_probs=208.5
Q ss_pred CCCccEEEeeCCCCCc------------------cCCCC---CCCCeeEEEcCCCCc-cccccccccCCCCCEEecCCCc
Q 039311 339 STELRYLQWHGCPLKS------------------LSSKI---PPENLVSLEMPHSSI-KQLWKGVQRLVNLKHINLSHSE 396 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~~~i-~~lp~~~~~L~~L~~L~Ls~~~ 396 (909)
+++|++|++++|.+.. +|..+ .+.+|++|+|++|.+ ..+|..++++++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 6777777777777776 77766 467777777777763 4667777777777777777776
Q ss_pred -CCC-cCCC-CCcc-------ccccccccccccccceecc--cccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 397 -HLT-KIPD-LSLA-------TNLESLNFQGCTCLLETHS--SIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 397 -~l~-~~p~-l~~l-------~~L~~L~L~~c~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+.. .+|. ++.+ ++|++|++++|... .+|. .++.+++|++|++++|. +..+|...++++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcC
Confidence 443 4553 3333 47777777777655 7777 77777777777777755 44777333577777777777
Q ss_pred CCCCcccCccc---cC-cceeeccccCccccCcccccCCC--CCEEeccCCCCCCcCccc---cc--CCCCCCeeecccc
Q 039311 465 CSNLMSFPELS---CN-IEELSLDGTAIQEFPSSIERLSS--LILLNLGNCLRLEGLPSK---IC--KLKSLERLNLAEA 533 (909)
Q Consensus 465 c~~l~~lp~~~---~~-L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~c~~l~~lp~~---l~--~L~~L~~L~l~~~ 533 (909)
|... .+|..+ .+ |+.|++++|.+..+|..+..++. |+.|++++|...+.+|.. ++ .+++|+.|
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L----- 678 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV----- 678 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE-----
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE-----
Confidence 6644 666432 34 77777777777777777766544 777777777665544432 22 22244444
Q ss_pred cccccccCcceeecCcccc-ccCCCCeeecCccccccccccccCc----cCCCCCCCEEecCCCCCCCcccccC--CCCC
Q 039311 534 LKELKAEGIAIREVPSSIA-CLKNLGRLSFESFMCHEQMGLLLPI----SFGLTSLTYLRLTDCGIIELPECLG--QLSS 606 (909)
Q Consensus 534 l~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~----~~~l~~L~~L~Ls~~~l~~lp~~l~--~l~~ 606 (909)
++++|.+..+|..+. .+++|+.|++++|....+....... +.++++|+.|+|++|.+..+|..+. .+++
T Consensus 679 ----~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 679 ----TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754 (876)
T ss_dssp ----ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT
T ss_pred ----EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC
Confidence 446666666766554 6677777777764332111111100 1122367777777777777777765 7777
Q ss_pred CcEEECCCCCCeecchhhccCCCCCEEeecC------CCCCcccCCC---CCCcCceecccCcccccccCcchhccccCC
Q 039311 607 RSILLLEKNNFERIPESIIQLSHLFSLGISH------CERLHSLPEL---PCDLSDIEAHCCSSLEALSGLSILFTQTSW 677 (909)
Q Consensus 607 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~~~~l~~~~~~ 677 (909)
|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++|.- +.+|... ..
T Consensus 755 L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l------~~ 827 (876)
T 4ecn_A 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL------TP 827 (876)
T ss_dssp CCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC------CS
T ss_pred cCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh------cC
Confidence 7777777777777777777777777777765 3334455542 34667777777643 5555531 12
Q ss_pred CcceeEecccC
Q 039311 678 NSQFFYFVNCF 688 (909)
Q Consensus 678 ~~~~l~~~~C~ 688 (909)
.+..+.+.+|+
T Consensus 828 ~L~~LdLs~N~ 838 (876)
T 4ecn_A 828 QLYILDIADNP 838 (876)
T ss_dssp SSCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 44555666554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=296.17 Aligned_cols=331 Identities=15% Similarity=0.148 Sum_probs=273.1
Q ss_pred CCCCCccCCCC-CCCCeeEEEcCCCCccc------------------cccccc--cCCCCCEEecCCCcCCCcCCC-CCc
Q 039311 349 GCPLKSLSSKI-PPENLVSLEMPHSSIKQ------------------LWKGVQ--RLVNLKHINLSHSEHLTKIPD-LSL 406 (909)
Q Consensus 349 ~~~l~~lp~~~-~~~~L~~L~L~~~~i~~------------------lp~~~~--~L~~L~~L~Ls~~~~l~~~p~-l~~ 406 (909)
+|.++.+|..+ .+.+|++|+|++|.+.. +|..++ ++++|++|++++|.+.+.+|. +++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34566688877 88999999999999998 999999 999999999999999999886 999
Q ss_pred ccccccccccccc-ccc-eecccccCC------CcccEeccccccCccccCc--cc-cCCcCcEEEccCCCCCcccCcc-
Q 039311 407 ATNLESLNFQGCT-CLL-ETHSSIQYL------NKLVVLNLKHCRSLTSLST--SI-HLGSLKKLILSGCSNLMSFPEL- 474 (909)
Q Consensus 407 l~~L~~L~L~~c~-~l~-~~p~~i~~L------~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~lp~~- 474 (909)
+++|++|++++|. ... .+|..++.+ ++|++|++++|. ++.+|. .+ ++++|+.|++++|...+.+|..
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~ 350 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchhhhC
Confidence 9999999999998 655 789988887 999999999975 558888 55 6999999999998877788832
Q ss_pred -ccCcceeeccccCccccCcccccCCC-CCEEeccCCCCCCcCcccccCCC--CCCeeeccc------------------
Q 039311 475 -SCNIEELSLDGTAIQEFPSSIERLSS-LILLNLGNCLRLEGLPSKICKLK--SLERLNLAE------------------ 532 (909)
Q Consensus 475 -~~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~~l~~lp~~l~~L~--~L~~L~l~~------------------ 532 (909)
..+|+.|++++|.+..+|.+++.+++ |+.|++++|... .+|..++.++ +|+.|++..
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 35789999999999999999999999 999999999765 8998887655 899998832
Q ss_pred ----ccccccccCcceeecCcccc-ccCCCCeeecCccccccccccccCc----cCCCCCCCEEecCCCCCCCcccccC-
Q 039311 533 ----ALKELKAEGIAIREVPSSIA-CLKNLGRLSFESFMCHEQMGLLLPI----SFGLTSLTYLRLTDCGIIELPECLG- 602 (909)
Q Consensus 533 ----~l~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~~~~~~~~~~~~----~~~l~~L~~L~Ls~~~l~~lp~~l~- 602 (909)
+++.|++++|.+..+|..+. .+++|+.|++++|....+....... +..+++|+.|+|++|.+..+|..+.
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 57788999999999998755 5899999999985443221111110 1123399999999999999999997
Q ss_pred -CCCCCcEEECCCCCCeecchhhccCCCCCEEeecC------CCCCcccCCC---CCCcCceecccCcccccccCcchhc
Q 039311 603 -QLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH------CERLHSLPEL---PCDLSDIEAHCCSSLEALSGLSILF 672 (909)
Q Consensus 603 -~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~~~~l~ 672 (909)
.+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++|.- +.+|...
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~--- 585 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--- 585 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH---
Confidence 99999999999999999999999999999999965 4455677753 46899999999865 7777632
Q ss_pred cccCCCcceeEecccC
Q 039311 673 TQTSWNSQFFYFVNCF 688 (909)
Q Consensus 673 ~~~~~~~~~l~~~~C~ 688 (909)
...+..+.+.+++
T Consensus 586 ---~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 586 ---TPNISVLDIKDNP 598 (636)
T ss_dssp ---CTTCCEEECCSCT
T ss_pred ---hCcCCEEECcCCC
Confidence 1456677777664
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=297.35 Aligned_cols=350 Identities=19% Similarity=0.196 Sum_probs=248.2
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCcc-ccccccccCC
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIK-QLWKGVQRLV 385 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~-~lp~~~~~L~ 385 (909)
+.++++|+.|++.+|.+.+... ...+.+|++|++++|.+...++.+ .+.+|++|++++|.+. .+|..+..++
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 247 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCB------CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCS
T ss_pred hccCCCCCEEECCCCcccccCC------cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCC
Confidence 5677777777777664332111 122677888888888776643334 6778888888888776 5567777788
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCC-CcccEeccccccCccccCccc-cCCcCcEEEcc
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYL-NKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILS 463 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L-~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls 463 (909)
+|++|++++|.+.+.+|.. .+++|++|++++|...+.+|..+..+ ++|++|++++|.....+|..+ ++++|++|+++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 8888888887766666655 66777777777776666667666654 777777777765444555555 46777777777
Q ss_pred CCCCCcccCcc----ccCcceeeccccCcc-ccCcccccCC-CCCEEeccCCCCCCcCcccccC--CCCCCeeecc----
Q 039311 464 GCSNLMSFPEL----SCNIEELSLDGTAIQ-EFPSSIERLS-SLILLNLGNCLRLEGLPSKICK--LKSLERLNLA---- 531 (909)
Q Consensus 464 ~c~~l~~lp~~----~~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~l~~--L~~L~~L~l~---- 531 (909)
+|...+.+|.. ..+|++|++++|.+. .+|.++..++ +|+.|++++|...+.+|..+.. +++|+.|++.
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 76655555532 345667777776666 6666666665 6666666666555555555544 5566666552
Q ss_pred -----------cccccccccCccee-ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC-Ccc
Q 039311 532 -----------EALKELKAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELP 598 (909)
Q Consensus 532 -----------~~l~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp 598 (909)
.+|+.|++++|.+. .+|..++.+++|+.|++++| .+.+..+..+..+++|+.|++++|.+. .+|
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n---~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN---MLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS---CCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC---cccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 23555666777776 67888999999999999983 333344455778999999999999998 588
Q ss_pred cccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccC
Q 039311 599 ECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 599 ~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~ 667 (909)
..++.+++|+.|+|++|+++ .+|.++..+++|+.|+|++|+....+|. -.++|+.|++.+|+--..+|.
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 89999999999999999998 8899999999999999999977768885 345788999998876656654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=283.33 Aligned_cols=343 Identities=17% Similarity=0.160 Sum_probs=217.7
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC-CCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI-PPEN 363 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~-~~~~ 363 (909)
.++.+.+..+.+. .+.+.+|.++++|++|++++|.+.. ..+..+. +.+|++|++++|.+..++ ..+ .+.+
T Consensus 34 ~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQIYW-----IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cCcEEEccCCccC--cCChhHhccCccceEEECCCCccce-----eChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 4555555555444 4457789999999999999886532 2234455 889999999999998874 455 7899
Q ss_pred eeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCC-cCCCCCccccccccccccccccceecccccCCCccc--Eecc
Q 039311 364 LVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLT-KIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLV--VLNL 439 (909)
Q Consensus 364 L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~-~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~--~L~L 439 (909)
|++|++++|.+..+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|......+..++.+++|+ .|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 99999999999988 5778999999999999998776 346677799999999999887766677888999999 8899
Q ss_pred ccccCccccCccccCCcCcEEEcc----------------------------------------------------CCCC
Q 039311 440 KHCRSLTSLSTSIHLGSLKKLILS----------------------------------------------------GCSN 467 (909)
Q Consensus 440 ~~c~~l~~lp~~~~l~~L~~L~Ls----------------------------------------------------~c~~ 467 (909)
++|......|..+...+|+.|+++ +|..
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 887644444443344444444444 4322
Q ss_pred CcccCc---cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccc-----------
Q 039311 468 LMSFPE---LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEA----------- 533 (909)
Q Consensus 468 l~~lp~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~----------- 533 (909)
....+. ...+|++|++++|.++.+|..++.+++|++|++++|......|..++.+++|+.|++..+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 221111 234567777777777777777777777777777777655555666677777777766322
Q ss_pred -----cccccccCcceeec---CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc--ccccCC
Q 039311 534 -----LKELKAEGIAIREV---PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL--PECLGQ 603 (909)
Q Consensus 534 -----l~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l--p~~l~~ 603 (909)
|+.|+++++.+..+ +..+..+++|+.|++++|. +.+.....+..+++|+.|++++|.+... +..+..
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS---CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc---CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 33344444444333 3344455555555554421 1111222234445555555555544432 122445
Q ss_pred CCCCcEEECCCCCCee-cchhhccCCCCCEEeecCCC
Q 039311 604 LSSRSILLLEKNNFER-IPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 604 l~~L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~c~ 639 (909)
+++|+.|++++|.+.. .|..+..+++|+.|++++|+
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 5555555555555542 23344455555555555543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=290.69 Aligned_cols=338 Identities=14% Similarity=0.137 Sum_probs=273.0
Q ss_pred cccccCCCCCcEEEEecCCCCcC---ccee---------ecCCCCC---CCCccEEEeeCCC-CCccCCCC-CCCCeeEE
Q 039311 305 AGSFTNMHKLRFFKFYSSHYGEN---VNKV---------HNFRGLE---STELRYLQWHGCP-LKSLSSKI-PPENLVSL 367 (909)
Q Consensus 305 ~~~f~~~~~Lr~L~l~~~~~~~~---~~~~---------~~~~~l~---~~~Lr~L~l~~~~-l~~lp~~~-~~~~L~~L 367 (909)
+..|.++++|+.|++++|.+.+. .... .++..+. +++|++|++++|. ...+|..+ .+.+|++|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 45799999999999999987651 0000 1444543 7899999999997 56778777 88999999
Q ss_pred EcCCCC-ccc--cccccccCC-------CCCEEecCCCcCCCcCCC---CCccccccccccccccccceecccccCCCcc
Q 039311 368 EMPHSS-IKQ--LWKGVQRLV-------NLKHINLSHSEHLTKIPD---LSLATNLESLNFQGCTCLLETHSSIQYLNKL 434 (909)
Q Consensus 368 ~L~~~~-i~~--lp~~~~~L~-------~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L 434 (909)
++++|. +.. +|..++.+. +|++|+|++|.+. .+|. ++.+++|++|++++|... .+| .++.+++|
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 999998 874 887777665 9999999999977 7776 899999999999998866 888 99999999
Q ss_pred cEeccccccCccccCccc-cCCc-CcEEEccCCCCCcccCcccc-----CcceeeccccCccccC----cccc--cCCCC
Q 039311 435 VVLNLKHCRSLTSLSTSI-HLGS-LKKLILSGCSNLMSFPELSC-----NIEELSLDGTAIQEFP----SSIE--RLSSL 501 (909)
Q Consensus 435 ~~L~L~~c~~l~~lp~~~-~l~~-L~~L~Ls~c~~l~~lp~~~~-----~L~~L~L~~~~i~~lp----~~i~--~l~~L 501 (909)
+.|++++|. +..+|..+ ++++ |+.|++++|... .+|..+. +|+.|++++|.+...+ ..++ .+++|
T Consensus 598 ~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCc-cccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 999999976 55888766 5888 999999998754 7886543 3889999999997543 3333 45589
Q ss_pred CEEeccCCCCCCcCcccc-cCCCCCCeeecccccccccccCcceeecCccccc--------cCCCCeeecCccccccccc
Q 039311 502 ILLNLGNCLRLEGLPSKI-CKLKSLERLNLAEALKELKAEGIAIREVPSSIAC--------LKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 502 ~~L~L~~c~~l~~lp~~l-~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~--------l~~L~~L~l~~~~~~~~~~ 572 (909)
+.|+|++|... .+|..+ ..+++|+.|++. +|.+..+|..+.. +++|+.|++++|...
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls---------~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---- 741 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILS---------NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---- 741 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECC---------SCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC----
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECC---------CCcCCccChHHhccccccccccCCccEEECCCCCCc----
Confidence 99999999665 778765 488999999884 4556677765443 349999999984333
Q ss_pred cccCccC--CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCC------CCCe-ecchhhccCCCCCEEeecCCCCCcc
Q 039311 573 LLLPISF--GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEK------NNFE-RIPESIIQLSHLFSLGISHCERLHS 643 (909)
Q Consensus 573 ~~~~~~~--~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ 643 (909)
..+..+. .+++|+.|+|++|.+..+|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|.. ..
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~ 820 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-Cc
Confidence 2333454 79999999999999999999999999999999977 5555 8899999999999999999865 99
Q ss_pred cCC-CCCCcCceecccCccc
Q 039311 644 LPE-LPCDLSDIEAHCCSSL 662 (909)
Q Consensus 644 lp~-l~~sL~~L~i~~C~~L 662 (909)
+|. ++++|+.|++++|+-.
T Consensus 821 Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 821 VDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CCSCCCSSSCEEECCSCTTC
T ss_pred cCHhhcCCCCEEECCCCCCC
Confidence 997 6789999999999743
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=279.38 Aligned_cols=359 Identities=19% Similarity=0.220 Sum_probs=217.2
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~~ 362 (909)
..++.+.+..+.+ ..+...+|.++++|++|++++|.+... .+..+. +++|++|++++|.+..+ |..+ .+.
T Consensus 32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETI-----EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCccccc-----CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 4455555544444 344566889999999999998765322 223344 78899999999999888 5566 788
Q ss_pred CeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCC-cCCC-CCccccccccccccccccceecccccCCCccc----
Q 039311 363 NLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLT-KIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLV---- 435 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~---- 435 (909)
+|++|++++|.+..++ ..++++++|++|++++|.+.. .+|. ++++++|++|++++|......+..++.+++|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 9999999999998887 678899999999999998765 4565 88999999999999877666666677666655
Q ss_pred EeccccccCccccCccc-cCCcCcEEEccCCCCCc---------------------------------------------
Q 039311 436 VLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLM--------------------------------------------- 469 (909)
Q Consensus 436 ~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~--------------------------------------------- 469 (909)
+|++++|. ++.++... ...+|+.|++++|...+
T Consensus 185 ~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 185 SLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp EEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred eeeccCCC-cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 67777754 44444433 34467777776654310
Q ss_pred -------------ccC--ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccc-
Q 039311 470 -------------SFP--ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEA- 533 (909)
Q Consensus 470 -------------~lp--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~- 533 (909)
.+| ....+|+.|+++++.+..+| ++..+++|+.|++++|.. +.+|. + .+++|+.|++..+
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCS
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCc
Confidence 011 11235566666666666666 566666666666666654 55552 3 5555555554322
Q ss_pred ------------ccccccc--------------------------CcceeecCccccccCCCCeeecCcccccccccccc
Q 039311 534 ------------LKELKAE--------------------------GIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLL 575 (909)
Q Consensus 534 ------------l~~L~l~--------------------------~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 575 (909)
++.|+++ ++.+..+|..+..+++|+.|++++|. +.+...
T Consensus 340 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~---l~~~~~ 416 (606)
T 3vq2_A 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST---LKRVTE 416 (606)
T ss_dssp SCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE---EESTTT
T ss_pred CccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc---cCCccC
Confidence 3344444 44444444444445555555554421 111111
Q ss_pred -CccCCCCCCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCee--cchhhccCCCCCEEeecCCCCCcccCC---CC
Q 039311 576 -PISFGLTSLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFER--IPESIIQLSHLFSLGISHCERLHSLPE---LP 648 (909)
Q Consensus 576 -~~~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~ 648 (909)
..+..+++|+.|++++|.+.. .|..++.+++|+.|++++|.+.. +|..+..+++|+.|+|++|......|. -.
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 234445555555555555553 44455555555555555555552 455555555666666665533332232 22
Q ss_pred CCcCceecccC
Q 039311 649 CDLSDIEAHCC 659 (909)
Q Consensus 649 ~sL~~L~i~~C 659 (909)
++|+.|++++|
T Consensus 497 ~~L~~L~Ls~N 507 (606)
T 3vq2_A 497 HRLQLLNMSHN 507 (606)
T ss_dssp TTCCEEECCSS
T ss_pred ccCCEEECCCC
Confidence 35555555555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=277.42 Aligned_cols=360 Identities=20% Similarity=0.192 Sum_probs=231.0
Q ss_pred CcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC-CC
Q 039311 285 TEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI-PP 361 (909)
Q Consensus 285 ~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~-~~ 361 (909)
...++.+.+..+.+. .+.+.+|.++++|++|++++|.+... .+..+. +.+|++|++++|.+..+| ..+ .+
T Consensus 55 l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 127 (606)
T 3vq2_A 55 FSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILTGNPIQSF-----SPGSFSGLTSLENLVAVETKLASLESFPIGQL 127 (606)
T ss_dssp CTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCCC-----CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred CccCcEEeCCCCccc--ccCHHHhhchhhcCEeECCCCccccc-----ChhhcCCcccCCEEEccCCccccccccccCCC
Confidence 344555555444443 34567888999999999988765432 233444 788899999998888887 334 77
Q ss_pred CCeeEEEcCCCCcc--ccccccccCCCCCEEecCCCcCCCcCCC-CCccc---------------------------ccc
Q 039311 362 ENLVSLEMPHSSIK--QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLAT---------------------------NLE 411 (909)
Q Consensus 362 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~---------------------------~L~ 411 (909)
.+|++|++++|.+. .+|..++++++|++|++++|.+....|. ++.+. +|+
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 88999999988887 4688888888888888888876554443 33332 455
Q ss_pred cccccccccc----------------------------------------------------------ceecccccCCCc
Q 039311 412 SLNFQGCTCL----------------------------------------------------------LETHSSIQYLNK 433 (909)
Q Consensus 412 ~L~L~~c~~l----------------------------------------------------------~~~p~~i~~L~~ 433 (909)
+|++++|... ..+|. +..+++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCC
Confidence 5555554321 00111 334445
Q ss_pred ccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc-----------------------cccCcceeeccccCccc
Q 039311 434 LVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE-----------------------LSCNIEELSLDGTAIQE 490 (909)
Q Consensus 434 L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~-----------------------~~~~L~~L~L~~~~i~~ 490 (909)
|+.|++++|. +..+|....+++|+.|++++|.. +.+|. ...+|++|++++|.+..
T Consensus 287 L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 287 VSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp CSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEE
T ss_pred CCEEEecCcc-chhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCC
Confidence 5555555532 34444222345555555555443 33332 23345555555555554
Q ss_pred c---CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc--cccccCCCCeeecCcc
Q 039311 491 F---PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS--SIACLKNLGRLSFESF 565 (909)
Q Consensus 491 l---p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~ 565 (909)
+ |..+..+++|+.|++++|. +..+|..+..+++|+.|++ +++.+..++. .+..+++|+.|++++|
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l---------~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF---------QHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEEC---------TTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeEC---------CCCccCCccChhhhhccccCCEEECcCC
Confidence 3 4555556666666666554 3334455555555555555 5666666543 6788889999998873
Q ss_pred ccccccccccCccCCCCCCCEEecCCCCCCC--cccccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCc
Q 039311 566 MCHEQMGLLLPISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~ 642 (909)
.+.......+..+++|+.|++++|.+.+ +|..++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++|+...
T Consensus 435 ---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 435 ---NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp ---CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ---CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 2333334456778899999999998885 677888889999999999988854 5678888999999999885444
Q ss_pred ccCC---CCCCcCceecccCcccccccCc
Q 039311 643 SLPE---LPCDLSDIEAHCCSSLEALSGL 668 (909)
Q Consensus 643 ~lp~---l~~sL~~L~i~~C~~L~~l~~~ 668 (909)
..|. -.++|+.|++++|. ++++|..
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred cCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 4454 24578888888885 6666653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=278.48 Aligned_cols=347 Identities=20% Similarity=0.191 Sum_probs=204.1
Q ss_pred CcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc--CCCCCCCCeeEEEcCCCCccccc-c
Q 039311 304 NAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL--SSKIPPENLVSLEMPHSSIKQLW-K 379 (909)
Q Consensus 304 ~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l--p~~~~~~~L~~L~L~~~~i~~lp-~ 379 (909)
.+.+|.++++|++|++.+|.+.... +..+. +++|++|++++|.+..+ |..+.+.+|++|++++|.+..++ .
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSID-----FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGG-----GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ChhhhcccccccEeeccccCcccCC-----cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 3456677777777777766543321 11233 67788888888888776 55557788888888888887764 4
Q ss_pred ccccCCCCC--EEecCCCcCCCcCCCCCccc-------------------------------------------------
Q 039311 380 GVQRLVNLK--HINLSHSEHLTKIPDLSLAT------------------------------------------------- 408 (909)
Q Consensus 380 ~~~~L~~L~--~L~Ls~~~~l~~~p~l~~l~------------------------------------------------- 408 (909)
.+..+++|+ .|++++|.+....|......
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 566677777 67777766554444321111
Q ss_pred ---cccccccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCc---cccCccee
Q 039311 409 ---NLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE---LSCNIEEL 481 (909)
Q Consensus 409 ---~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L 481 (909)
+|++|++++|......+..++.+++|++|++++| .++.+|..+ ++++|++|++++|......|. ...+|+.|
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 2333333333222222233445555555555553 234444433 355555555555443322221 12344455
Q ss_pred eccccCcc-ccCcc-cccCCCCCEEeccCCCCCCcC--cccccCCCCCCeeeccc---------------ccccccccCc
Q 039311 482 SLDGTAIQ-EFPSS-IERLSSLILLNLGNCLRLEGL--PSKICKLKSLERLNLAE---------------ALKELKAEGI 542 (909)
Q Consensus 482 ~L~~~~i~-~lp~~-i~~l~~L~~L~L~~c~~l~~l--p~~l~~L~~L~~L~l~~---------------~l~~L~l~~~ 542 (909)
++++|.+. .+|.. ++.+++|+.|++++|...... |..++.+++|+.|++.. +|+.|+++++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 55544443 33332 444445555555444333222 33344444444444421 2344445666
Q ss_pred ceeec-C-ccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC----cccccCCCCCCcEEECCCCC
Q 039311 543 AIREV-P-SSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE----LPECLGQLSSRSILLLEKNN 616 (909)
Q Consensus 543 ~~~~l-p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~----lp~~l~~l~~L~~L~L~~n~ 616 (909)
.+... | ..+..+++|+.|++++| .+.......+..+++|+.|++++|.+.+ .+..+..+++|+.|++++|+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHS---LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTC---CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred cCCCcccchhhhCcccCCEEECCCC---ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 66644 2 34788999999999873 2333334446778999999999998875 23568889999999999999
Q ss_pred Ceec-chhhccCCCCCEEeecCCCCCcccCCCCC---CcCceecccCc
Q 039311 617 FERI-PESIIQLSHLFSLGISHCERLHSLPELPC---DLSDIEAHCCS 660 (909)
Q Consensus 617 l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l~~---sL~~L~i~~C~ 660 (909)
++.+ |..+..+++|+.|+|++|+.....|+.+. +| .|++.+|.
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 9865 67889999999999999865555554333 45 67777773
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=273.06 Aligned_cols=367 Identities=21% Similarity=0.264 Sum_probs=254.3
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPEN 363 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~ 363 (909)
.++.+.+..+.+. .+...+|.++++|+.|++.+|.+... .+..+. +.+|++|++++|.++.+|. .+ .+.+
T Consensus 29 ~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~i-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 29 STKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTI-----EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCCEEECCSCCCC--EECTTTTTTCSSCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccEEEccCCccC--ccChhHhhCCCCceEEECCCCcCCcc-----CcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 4555555444443 34567899999999999998765322 223344 7899999999999988874 44 7889
Q ss_pred eeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCC-cCCC-CCccccccccccccccccceecccccCCCcc----cE
Q 039311 364 LVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLT-KIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKL----VV 436 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L----~~ 436 (909)
|++|++++|.+..++. .++++++|++|++++|.+.. .+|. ++++++|++|++++|......+..++.+++| +.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9999999999998875 68899999999999998765 3565 8889999999999987766666777777777 78
Q ss_pred eccccccCccccCccccCCcCcEEEccCCCC-------------------------------------------------
Q 039311 437 LNLKHCRSLTSLSTSIHLGSLKKLILSGCSN------------------------------------------------- 467 (909)
Q Consensus 437 L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~------------------------------------------------- 467 (909)
|++++|......|..+...+|+.|++++|..
T Consensus 182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 8888765333333333333566665555410
Q ss_pred ---------CcccCc---cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCccc-----------------
Q 039311 468 ---------LMSFPE---LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSK----------------- 518 (909)
Q Consensus 468 ---------l~~lp~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~----------------- 518 (909)
.+..|. ...+|+.|+++++.+..+|.++..+ +|+.|++++|... .+|..
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccc
Confidence 000111 1245666666666666666666555 5666665555432 33321
Q ss_pred ---ccCCCCCCeeecc-----------------cccccccccCcceeecCccccccCCCCeeecCcccccccccccc-Cc
Q 039311 519 ---ICKLKSLERLNLA-----------------EALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLL-PI 577 (909)
Q Consensus 519 ---l~~L~~L~~L~l~-----------------~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~ 577 (909)
...+++|+.|++. .+++.|+++++.+..+|..+..+++|+.|++++|. +..... ..
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN---LKQMSEFSV 416 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE---EESCTTSCT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc---cccccchhh
Confidence 1456666666663 23566677777777777777788888888887732 222222 24
Q ss_pred cCCCCCCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCCCCcccCC---CCCCc
Q 039311 578 SFGLTSLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDL 651 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL 651 (909)
+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|......|. -.++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 6678999999999998885 6777888999999999999886 6888899999999999999865444454 24578
Q ss_pred CceecccCccccccc
Q 039311 652 SDIEAHCCSSLEALS 666 (909)
Q Consensus 652 ~~L~i~~C~~L~~l~ 666 (909)
+.|++.+| .++.++
T Consensus 497 ~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 497 QVLNMASN-QLKSVP 510 (570)
T ss_dssp CEEECCSS-CCSCCC
T ss_pred CEEeCCCC-cCCCCC
Confidence 89999887 455554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=277.57 Aligned_cols=372 Identities=21% Similarity=0.237 Sum_probs=253.7
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~ 362 (909)
..++.+.+..+.+. .+.+.+|.++++|++|++++|.+... .+..+. +.+|++|++++|.+..+|.. + .+.
T Consensus 26 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTI-----EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCcc-----ChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 34565555555443 34467899999999999998875432 223344 78999999999999988875 4 789
Q ss_pred CeeEEEcCCCCcccc--ccccccCCCCCEEecCCCcCCCcCC--CCCccccccccccccccccceecccccCCCcccEec
Q 039311 363 NLVSLEMPHSSIKQL--WKGVQRLVNLKHINLSHSEHLTKIP--DLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLN 438 (909)
Q Consensus 363 ~L~~L~L~~~~i~~l--p~~~~~L~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~ 438 (909)
+|++|++++|.+..+ |..++++++|++|++++|...+.+| .+..+++|++|++++|......|..++.+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 999999999999854 6778999999999999998677766 489999999999999988877888888887777777
Q ss_pred cccccCccccCccc--cCCcCcEEEccCCCCCcc------cCc-------------------------------------
Q 039311 439 LKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMS------FPE------------------------------------- 473 (909)
Q Consensus 439 L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~------lp~------------------------------------- 473 (909)
+++|. ...+|... .+++|++|++++|...+. +..
T Consensus 179 l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 179 LHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred cccCc-ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 77654 23333322 255555555555432221 000
Q ss_pred --------------------------------------------------cccCcceeeccccCccccCccc-ccCCCCC
Q 039311 474 --------------------------------------------------LSCNIEELSLDGTAIQEFPSSI-ERLSSLI 502 (909)
Q Consensus 474 --------------------------------------------------~~~~L~~L~L~~~~i~~lp~~i-~~l~~L~ 502 (909)
..++++.|++++|.+..+|..+ ..+++|+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcccc
Confidence 1134566666666666666665 4577777
Q ss_pred EEeccCCCCCCcCcc---cccCCCCCCeeecccccccccccCcceeecC---ccccccCCCCeeecCccccccccccccC
Q 039311 503 LLNLGNCLRLEGLPS---KICKLKSLERLNLAEALKELKAEGIAIREVP---SSIACLKNLGRLSFESFMCHEQMGLLLP 576 (909)
Q Consensus 503 ~L~L~~c~~l~~lp~---~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp---~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 576 (909)
.|++++|...+.+|. .++.+++|+.|++ ++|.+..++ ..+..+++|+.|++++|... ..+.
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L---------s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~ 404 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVL---------SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH----PMPD 404 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEEC---------TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC----CCCS
T ss_pred EEEccCCccccccccchhhhhccccCcEEEc---------cCCcccccccchhhhhcCCCCCEEECCCCCCc----cCCh
Confidence 777777766555432 2566677777666 555666554 34777888888888874322 2233
Q ss_pred ccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC--CCCCcCce
Q 039311 577 ISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE--LPCDLSDI 654 (909)
Q Consensus 577 ~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l~~sL~~L 654 (909)
.+..+++|+.|++++|.+..+|..+ .++|+.|++++|+++.++ ..+++|+.|+|++| .++.+|. ..++|+.|
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L 478 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVM 478 (549)
T ss_dssp CCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEE
T ss_pred hhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcCCCcccCccCCEE
Confidence 4566788888888888887776554 257888888888887665 46778888888886 5667775 35678888
Q ss_pred ecccCcccccccCcchhccccCCCcceeEecccC
Q 039311 655 EAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCF 688 (909)
Q Consensus 655 ~i~~C~~L~~l~~~~~l~~~~~~~~~~l~~~~C~ 688 (909)
++++| .|+.++.... .....+..+.+.+++
T Consensus 479 ~Ls~N-~l~~~~~~~~---~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 479 KISRN-QLKSVPDGIF---DRLTSLQKIWLHTNP 508 (549)
T ss_dssp ECCSS-CCCCCCTTGG---GGCTTCCEEECCSSC
T ss_pred ecCCC-ccCCcCHHHH---hcCcccCEEEecCCC
Confidence 88876 4554443210 122334556665554
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=272.45 Aligned_cols=349 Identities=18% Similarity=0.214 Sum_probs=249.2
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCe
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENL 364 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L 364 (909)
..++.+.+..+.+ ..+.+.+|.++++|++|++++|.+.+. .+..+. +++|++|++++|.++.+|.. .+.+|
T Consensus 21 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYL-----DISVFKFNQELEYLDLSHNKLVKISCH-PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEE-----EGGGGTTCTTCCEEECCSSCCCEEECC-CCCCC
T ss_pred ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCc-----ChHHhhcccCCCEEecCCCceeecCcc-ccCCc
Confidence 4455555554443 334457899999999999998876432 123334 78999999999999999988 88999
Q ss_pred eEEEcCCCCccc--cccccccCCCCCEEecCCCcCCCcCCCCCccccc--cccccccccc--cceecccccC--------
Q 039311 365 VSLEMPHSSIKQ--LWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNL--ESLNFQGCTC--LLETHSSIQY-------- 430 (909)
Q Consensus 365 ~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--l~~~p~~i~~-------- 430 (909)
++|++++|.+.. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..++.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 999999999986 56889999999999999987654 346666777 8888888766 4444444433
Q ss_pred ------------------CCcccEecccccc-------CccccCc---------------------------cccCCcCc
Q 039311 431 ------------------LNKLVVLNLKHCR-------SLTSLST---------------------------SIHLGSLK 458 (909)
Q Consensus 431 ------------------L~~L~~L~L~~c~-------~l~~lp~---------------------------~~~l~~L~ 458 (909)
+++|+.|++++|. ....+|. ....++|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 4555555555542 0000000 00123555
Q ss_pred EEEccCCCCCcccCccc----------------------------------cCcceeeccccCccccCcccccCCCCCEE
Q 039311 459 KLILSGCSNLMSFPELS----------------------------------CNIEELSLDGTAIQEFPSSIERLSSLILL 504 (909)
Q Consensus 459 ~L~Ls~c~~l~~lp~~~----------------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 504 (909)
.|++++|...+.+|... .+++.|++++|.+..++. ...+++|++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 329 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEE
Confidence 55555554333444322 236666666666554431 2688999999
Q ss_pred eccCCCCCCcCcccccCCCCCCeeecccccccccccCccee---ecCccccccCCCCeeecCccccccccc-cccCccCC
Q 039311 505 NLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR---EVPSSIACLKNLGRLSFESFMCHEQMG-LLLPISFG 580 (909)
Q Consensus 505 ~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~ 580 (909)
++++|...+.+|..++.+++|+.|++. +|.+. .+|..+..+++|+.|++++|.. .+ .....+..
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~---------~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l---~~~l~~~~~~~ 397 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQ---------MNQLKELSKIAEMTTQMKSLQQLDISQNSV---SYDEKKGDCSW 397 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECC---------SSCCCBHHHHHHHHTTCTTCCEEECCSSCC---BCCGGGCSCCC
T ss_pred EeECCccChhhhhhhccCCCCCEEEcc---------CCccCccccchHHHhhCCCCCEEECCCCcC---Ccccccchhcc
Confidence 999998888899999999999999884 44555 4556789999999999998433 32 12223667
Q ss_pred CCCCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC----CCCcCcee
Q 039311 581 LTSLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL----PCDLSDIE 655 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----~~sL~~L~ 655 (909)
+++|+.|++++|.+.. +|..+. ++|+.|++++|+++.+|..+..+++|+.|+|++| .++.+|.. .++|+.|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence 8999999999999974 555554 7999999999999999999999999999999997 57788763 34677777
Q ss_pred cccCc
Q 039311 656 AHCCS 660 (909)
Q Consensus 656 i~~C~ 660 (909)
+.+++
T Consensus 475 l~~N~ 479 (520)
T 2z7x_B 475 LHTNP 479 (520)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 77664
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=266.46 Aligned_cols=360 Identities=19% Similarity=0.225 Sum_probs=234.9
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~ 362 (909)
..++.+.+..+.+. .+.+.+|.++++|++|++.+|.+... .+..+. +.+|++|++++|.++.+|.. + .+.
T Consensus 52 ~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 52 PELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCceEEECCCCcCC--ccCcccccCchhCCEEeCcCCcCCcc-----CHhhhcCccccccccccccccccCCCccccccc
Confidence 44555544444433 34567888999999999988765322 123344 78889999998888888762 3 778
Q ss_pred CeeEEEcCCCCccc--cccccccCCCCCEEecCCCcCCCcCCC-CCccccc----cccccccccccce------------
Q 039311 363 NLVSLEMPHSSIKQ--LWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNL----ESLNFQGCTCLLE------------ 423 (909)
Q Consensus 363 ~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L----~~L~L~~c~~l~~------------ 423 (909)
+|++|++++|.+.. +|..++++++|++|++++|.+....|. ++.+++| ++|++++|.....
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 89999999888875 678888888899998888876554443 4455555 4455554432221
Q ss_pred ---------------------------------------------------------------------ecccccCCCcc
Q 039311 424 ---------------------------------------------------------------------THSSIQYLNKL 434 (909)
Q Consensus 424 ---------------------------------------------------------------------~p~~i~~L~~L 434 (909)
.|..++.+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 22334445566
Q ss_pred cEeccccccCccccCcccc-CCcCcEEEccCCCCCcccCc-cccCcceeeccccCccccCcccccCCCCCEEeccCCCCC
Q 039311 435 VVLNLKHCRSLTSLSTSIH-LGSLKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRL 512 (909)
Q Consensus 435 ~~L~L~~c~~l~~lp~~~~-l~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l 512 (909)
+.|++++|. +..+|..+. + +|+.|++++|... .+|. ...+|+.|++++|.+...... ..+++|+.|++++|...
T Consensus 285 ~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~ 360 (570)
T 2z63_A 285 SSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLS 360 (570)
T ss_dssp SEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCB
T ss_pred cEEEecCcc-chhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccC
Confidence 666666543 344554442 3 5555555555433 3332 233444444444444322221 45556666666665433
Q ss_pred CcC--cccccCCCCCCeeeccc--------------ccccccccCcceeecCc--cccccCCCCeeecCccccccccccc
Q 039311 513 EGL--PSKICKLKSLERLNLAE--------------ALKELKAEGIAIREVPS--SIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 513 ~~l--p~~l~~L~~L~~L~l~~--------------~l~~L~l~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
... |..+..+++|+.|++.. +++.|+++++.+...+. .+..+++|+.|++++| .+....
T Consensus 361 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~ 437 (570)
T 2z63_A 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVAF 437 (570)
T ss_dssp EEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS---CCEECC
T ss_pred ccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC---cccccc
Confidence 221 44455566666666532 35555667777776643 6889999999999983 333333
Q ss_pred cCccCCCCCCCEEecCCCCCC--CcccccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCcccCC-C---
Q 039311 575 LPISFGLTSLTYLRLTDCGII--ELPECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLHSLPE-L--- 647 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~-l--- 647 (909)
...+.++++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+ |..+..+++|+.|+|++|. ++.+|. .
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhc
Confidence 445778999999999999987 4899999999999999999999966 7889999999999999984 555543 2
Q ss_pred CCCcCceecccCc
Q 039311 648 PCDLSDIEAHCCS 660 (909)
Q Consensus 648 ~~sL~~L~i~~C~ 660 (909)
.++|+.|++.+++
T Consensus 517 l~~L~~L~l~~N~ 529 (570)
T 2z63_A 517 LTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCcEEEecCCc
Confidence 3466667776654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=247.88 Aligned_cols=279 Identities=20% Similarity=0.254 Sum_probs=140.8
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCC
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVN 386 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~ 386 (909)
+..+++|+.|++.++..... .++. +++|++|++++|.++.+|....+.+|++|++++|.+..++ .+..+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-------~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-------QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred chhcccccEEEEeCCccccc-------hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 34566677777665543221 1222 5566666666666666655335566666666666666654 3566666
Q ss_pred CCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCC
Q 039311 387 LKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCS 466 (909)
Q Consensus 387 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~ 466 (909)
|++|++++|.+. .++.+..+++|++|++++|.....++ .+..+++|++|++++|. +..++....+++|+.|++++|.
T Consensus 112 L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 112 LRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQ 188 (347)
T ss_dssp CSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSC
T ss_pred CCEEECcCCccc-CchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCc
Confidence 666666666533 23335566666666666665444433 25666666666666643 3333333345556666665543
Q ss_pred CCcccCc--cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 467 NLMSFPE--LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 467 ~l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
.. .++. ...+|+.|++++|.+..++. +..+++|+.|++++| .+
T Consensus 189 l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n---------------------------------~l 233 (347)
T 4fmz_A 189 IE-DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN---------------------------------KI 233 (347)
T ss_dssp CC-CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS---------------------------------CC
T ss_pred cc-ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC---------------------------------cc
Confidence 22 2221 22344455555554444433 444455555555544 33
Q ss_pred eecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe-ecchh
Q 039311 545 REVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE-RIPES 623 (909)
Q Consensus 545 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~ 623 (909)
..++. +..+++|+.|++++|.... ++.+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.+. ..|..
T Consensus 234 ~~~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 234 TDLSP-LANLSQLTWLEIGTNQISD-----INAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCC-----CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred CCCcc-hhcCCCCCEEECCCCccCC-----ChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhH
Confidence 33333 4444445555544421111 123344455555555555555442 3444555555555555554 22334
Q ss_pred hccCCCCCEEeecCCC
Q 039311 624 IIQLSHLFSLGISHCE 639 (909)
Q Consensus 624 i~~l~~L~~L~L~~c~ 639 (909)
+..+++|+.|++++|+
T Consensus 307 l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNH 322 (347)
T ss_dssp HHTCTTCSEEECCSSS
T ss_pred hhccccCCEEEccCCc
Confidence 4555555555555543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=268.82 Aligned_cols=346 Identities=18% Similarity=0.217 Sum_probs=263.7
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCccccccc-cccCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWKG-VQRLVNL 387 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~~-~~~L~~L 387 (909)
++|+.|++++|.+.+. .+..+. +++|++|++++|.+..++. .+ .+.+|++|++++|.+..++.. ++.+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI-----GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEE-----CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCcc-----ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 6899999998875432 123444 8899999999999999885 44 889999999999999998865 8999999
Q ss_pred CEEecCCCcCCC-cCC-CCCccccccccccccccccceec-ccccCCCcccEeccccccCccccCccc-cCCcCcEEEcc
Q 039311 388 KHINLSHSEHLT-KIP-DLSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILS 463 (909)
Q Consensus 388 ~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls 463 (909)
++|++++|.+.. ..| .++.+++|++|++++|.....+| ..++.+++|++|++++|......|..+ .+++|+.|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 999999998765 234 58999999999999998777776 579999999999999987655567666 59999999999
Q ss_pred CCCCCcccCc----cccCcceeeccccCccccC---cc-cccCCCCCEEec----------------------------c
Q 039311 464 GCSNLMSFPE----LSCNIEELSLDGTAIQEFP---SS-IERLSSLILLNL----------------------------G 507 (909)
Q Consensus 464 ~c~~l~~lp~----~~~~L~~L~L~~~~i~~lp---~~-i~~l~~L~~L~L----------------------------~ 507 (909)
+|.. ..+|. ...+|++|++++|.+..++ .. ...+++|+.|++ +
T Consensus 181 ~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 8764 33343 3578999999999888652 12 223444555544 4
Q ss_pred CCCCCC--cC----cccccCCCCCCeeecc--------------------cccccccccCcceeecCccc-cccCCCCee
Q 039311 508 NCLRLE--GL----PSKICKLKSLERLNLA--------------------EALKELKAEGIAIREVPSSI-ACLKNLGRL 560 (909)
Q Consensus 508 ~c~~l~--~l----p~~l~~L~~L~~L~l~--------------------~~l~~L~l~~~~~~~lp~~i-~~l~~L~~L 560 (909)
+|...+ .+ ...+..+++|+.|.+. ..++.++++++.+..+|..+ ..+++|+.|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 443211 11 1123455666666542 35777888888888999877 579999999
Q ss_pred ecCccccccccccccCccCCCCCCCEEecCCCCCCCcc---cccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecC
Q 039311 561 SFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP---ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp---~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 637 (909)
++++|............+..+++|+.|++++|.+..++ ..+..+++|+.|++++|+++.+|..+..+++|+.|++++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCC
Confidence 99984322211001223567899999999999999875 458899999999999999999999999999999999999
Q ss_pred CCCCcccCC-CCCCcCceecccCcccccc
Q 039311 638 CERLHSLPE-LPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 638 c~~L~~lp~-l~~sL~~L~i~~C~~L~~l 665 (909)
|. ++.+|. .+++|+.|++++| .|+.+
T Consensus 420 N~-l~~l~~~~~~~L~~L~Ls~N-~l~~~ 446 (549)
T 2z81_A 420 TG-IRVVKTCIPQTLEVLDVSNN-NLDSF 446 (549)
T ss_dssp SC-CSCCCTTSCTTCSEEECCSS-CCSCC
T ss_pred CC-cccccchhcCCceEEECCCC-Chhhh
Confidence 75 777775 5678999999988 44443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=264.27 Aligned_cols=348 Identities=15% Similarity=0.125 Sum_probs=251.2
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CCCCeeEEEcCCCCccccccccccCCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLK 388 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~ 388 (909)
++|+.|++++|.+.+... ..+. +++|++|++++|.+..+ |..+ .+.+|++|++++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQNYISELWT-----SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEEECCSSCCCCCCH-----HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEEECCCCcccccCh-----hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 799999999887654321 1223 78899999999999988 4555 789999999999999999987 899999
Q ss_pred EEecCCCcCCC-cCCC-CCccccccccccccccccceecccccCCCcc--cEeccccccC--ccccCccc----------
Q 039311 389 HINLSHSEHLT-KIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKL--VVLNLKHCRS--LTSLSTSI---------- 452 (909)
Q Consensus 389 ~L~Ls~~~~l~-~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L--~~L~L~~c~~--l~~lp~~~---------- 452 (909)
+|++++|.+.. .+|. ++.+++|++|++++|.... ..++.+++| ++|++++|.. ....|..+
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l 170 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEE
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEE
Confidence 99999998776 3554 8999999999999987654 456777777 9999998764 22222222
Q ss_pred -----------------cCCcCcEEEccCCC-------C------CcccCc-----------------------cccCcc
Q 039311 453 -----------------HLGSLKKLILSGCS-------N------LMSFPE-----------------------LSCNIE 479 (909)
Q Consensus 453 -----------------~l~~L~~L~Ls~c~-------~------l~~lp~-----------------------~~~~L~ 479 (909)
++++|+.|++++|. . +..++. ...+|+
T Consensus 171 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 26677777777664 0 111110 012788
Q ss_pred eeeccccCcc-ccCccc-----ccCCCCCEEe--------------------------ccCCCCCCcCcccccCCCCCCe
Q 039311 480 ELSLDGTAIQ-EFPSSI-----ERLSSLILLN--------------------------LGNCLRLEGLPSKICKLKSLER 527 (909)
Q Consensus 480 ~L~L~~~~i~-~lp~~i-----~~l~~L~~L~--------------------------L~~c~~l~~lp~~l~~L~~L~~ 527 (909)
+|++++|.+. .+|.++ +.+++|+.++ +++|.... .+ ....+++|+.
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~ 328 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML-CPSKISPFLH 328 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCE
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc-cc-chhhCCcccE
Confidence 9999999988 888887 6665555554 44443221 11 1257778887
Q ss_pred eecccccccccccCcceee-cCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC-cccc-cCCC
Q 039311 528 LNLAEALKELKAEGIAIRE-VPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE-LPEC-LGQL 604 (909)
Q Consensus 528 L~l~~~l~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~-l~~l 604 (909)
|++ +++.+.. +|..++.+++|+.|++++|....+. ..+..+..+++|+.|++++|.+.. +|.. +..+
T Consensus 329 L~L---------s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 329 LDF---------SNNLLTDTVFENCGHLTELETLILQMNQLKELS-KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp EEC---------CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred EEe---------ECCccChhhhhhhccCCCCCEEEccCCccCccc-cchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence 777 4555655 6788999999999999984433211 112336789999999999999997 8875 7889
Q ss_pred CCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccCcchhccccCCCcc
Q 039311 605 SSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQ 680 (909)
Q Consensus 605 ~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~~~l~~~~~~~~~ 680 (909)
++|+.|++++|+++ .+|..+. ++|+.|++++| .++.+|. ..++|+.|++.+| .++.++... + .....+.
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~-~--~~l~~L~ 471 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGI-F--DRLTSLQ 471 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT-T--TTCTTCC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHH-h--ccCCccc
Confidence 99999999999996 5665543 79999999998 5678886 3568999999998 577776531 0 1223455
Q ss_pred eeEecccC
Q 039311 681 FFYFVNCF 688 (909)
Q Consensus 681 ~l~~~~C~ 688 (909)
.+.+.+++
T Consensus 472 ~L~l~~N~ 479 (520)
T 2z7x_B 472 KIWLHTNP 479 (520)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 66666554
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-26 Score=261.42 Aligned_cols=339 Identities=17% Similarity=0.178 Sum_probs=212.2
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC-ccC-CCC-CCCCeeEEEcCCCCcccc-ccccccCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK-SLS-SKI-PPENLVSLEMPHSSIKQL-WKGVQRLVN 386 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~-~lp-~~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~ 386 (909)
++|+.|++++|.+.+. .+..+. +++|++|++++|.+. .++ ..+ .+.+|++|++++|.+..+ |..+.++++
T Consensus 30 ~~l~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-----NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCEE-----CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCccCcC-----ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 5677777776654321 123333 667777777777664 443 333 567777777777777665 556777777
Q ss_pred CCEEecCCCcCCCcCC-C--CCccccccccccccccccceeccc-ccCCCcccEeccccccCccccCccc-c--CCcCcE
Q 039311 387 LKHINLSHSEHLTKIP-D--LSLATNLESLNFQGCTCLLETHSS-IQYLNKLVVLNLKHCRSLTSLSTSI-H--LGSLKK 459 (909)
Q Consensus 387 L~~L~Ls~~~~l~~~p-~--l~~l~~L~~L~L~~c~~l~~~p~~-i~~L~~L~~L~L~~c~~l~~lp~~~-~--l~~L~~ 459 (909)
|++|++++|.+....| . +..+++|++|++++|......|.. ++.+++|++|++++|......+..+ . ..+|+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 7777777776554333 2 667777777777776655554554 6677777777777765333333333 1 256777
Q ss_pred EEccCCCCCcccCc-----------cccCcceeeccccCcc-ccCcccccC---CCCCEEeccCCCCCCcCcccccCCCC
Q 039311 460 LILSGCSNLMSFPE-----------LSCNIEELSLDGTAIQ-EFPSSIERL---SSLILLNLGNCLRLEGLPSKICKLKS 524 (909)
Q Consensus 460 L~Ls~c~~l~~lp~-----------~~~~L~~L~L~~~~i~-~lp~~i~~l---~~L~~L~L~~c~~l~~lp~~l~~L~~ 524 (909)
|++++|.....-+. ...+|+.|++++|.+. ..|..+..+ ++|+.|++++|........ ...++.
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 263 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKD 263 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhcc
Confidence 77776554332211 1135677777777665 344444332 6677777776644332110 011111
Q ss_pred CCeeec----ccccccccccCcceeec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-c
Q 039311 525 LERLNL----AEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-P 598 (909)
Q Consensus 525 L~~L~l----~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p 598 (909)
+....+ ..+++.++++++.+..+ |..++.+++|+.|++++|. +.+.....+..+++|+.|+|++|.+.++ |
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE---INKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc---ccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 110000 02344555566666654 5678889999999998843 3333344577889999999999999875 6
Q ss_pred cccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCcccCC----CCCCcCceecccCc
Q 039311 599 ECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLHSLPE----LPCDLSDIEAHCCS 660 (909)
Q Consensus 599 ~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C~ 660 (909)
..++.+++|+.|+|++|+++.+ |..+..+++|+.|+|++| .++.+|. ..++|+.|++.+++
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 7788999999999999999866 678889999999999996 4666664 23466777776654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-25 Score=265.71 Aligned_cols=346 Identities=19% Similarity=0.153 Sum_probs=238.5
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~ 362 (909)
..++.+.+..+.+. .+...+|.++++|++|++.+|.+.+.. +..+. +++|++|++++|.+..+|.. + .+.
T Consensus 25 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTISKLE-----PELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCCC--CCCGGGGGGGTTCSEEECCSSCCCCCC-----TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCCCCCC--CcCHHHHhCCCcCcEEECCCCccCccC-----HHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 34565555554443 345678999999999999987654322 12223 78999999999999999974 4 789
Q ss_pred CeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceeccccc--CCCcccEec
Q 039311 363 NLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQ--YLNKLVVLN 438 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~--~L~~L~~L~ 438 (909)
+|++|++++|.+..++ ..++++++|++|++++|.+....|. ++.+++|++|++++|......+..++ .+++|++|+
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 9999999999999887 5688999999999999988777665 88999999999999876555454444 568999999
Q ss_pred cccccCccccCccc-c---------------------------CCcCcEEEccCCCCCcccCccc-----cCcceeeccc
Q 039311 439 LKHCRSLTSLSTSI-H---------------------------LGSLKKLILSGCSNLMSFPELS-----CNIEELSLDG 485 (909)
Q Consensus 439 L~~c~~l~~lp~~~-~---------------------------l~~L~~L~Ls~c~~l~~lp~~~-----~~L~~L~L~~ 485 (909)
+++|......|..+ . .++|+.|++++|...+..|..+ .+|+.|++++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 99874332222222 1 2567888888876655555433 3499999999
Q ss_pred cCccccC-cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc------------------------cccccccc
Q 039311 486 TAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE------------------------ALKELKAE 540 (909)
Q Consensus 486 ~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~------------------------~l~~L~l~ 540 (909)
|.+..++ ..++.+++|++|++++|...+..|..++.+++|+.|++.. +++.|+++
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 9998765 5689999999999999988877888889999999998842 45667777
Q ss_pred CcceeecCc-cccccCCCCeeecCccccccccccccCccC--CCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCC
Q 039311 541 GIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISF--GLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNN 616 (909)
Q Consensus 541 ~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~ 616 (909)
++.+..++. .+..+++|+.|++++|... ........+. ..++|+.|++++|.+..+ |..+..+++|+.|++++|.
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTS-LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSC-CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccCCCChhHhccccCCcEEECCCCchh-hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc
Confidence 777766543 4777888888888763210 0000000011 123455555555555542 3455555666666666665
Q ss_pred Ce-ecc-hhhccCCCCCEEeecCCC
Q 039311 617 FE-RIP-ESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 617 l~-~lp-~~i~~l~~L~~L~L~~c~ 639 (909)
+. .+| ..+..+++|+.|++++|+
T Consensus 417 l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 417 IGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CccccCcccccCcccccEEecCCCC
Confidence 54 343 345555555555555553
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=255.47 Aligned_cols=341 Identities=18% Similarity=0.196 Sum_probs=268.0
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CCC
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PPE 362 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~~ 362 (909)
..++.+.+..+.+. .+.+.+|.++++|++|++.+|.... ...+..+. +++|++|++++|.+..+ |..+ .+.
T Consensus 30 ~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCC--EECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCccC--cCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 44566655555443 3456789999999999999876431 11223344 88999999999999887 5556 789
Q ss_pred CeeEEEcCCCCccc-cccc--cccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCC--Cccc
Q 039311 363 NLVSLEMPHSSIKQ-LWKG--VQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYL--NKLV 435 (909)
Q Consensus 363 ~L~~L~L~~~~i~~-lp~~--~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L--~~L~ 435 (909)
+|++|++++|.+.. ++.. +..+++|++|++++|.+....|. +..+++|++|++++|......+..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999999985 4444 88999999999999998887776 8899999999999998887778888776 7999
Q ss_pred EeccccccCccccCcc----------ccCCcCcEEEccCCCCCcccCccc------cCcceeeccccCccccC-------
Q 039311 436 VLNLKHCRSLTSLSTS----------IHLGSLKKLILSGCSNLMSFPELS------CNIEELSLDGTAIQEFP------- 492 (909)
Q Consensus 436 ~L~L~~c~~l~~lp~~----------~~l~~L~~L~Ls~c~~l~~lp~~~------~~L~~L~L~~~~i~~lp------- 492 (909)
.|++++|. +..++.. ..+++|+.|++++|...+..|..+ .+++.|+++++.+....
T Consensus 184 ~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 184 LLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred ccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 99999965 4444332 246899999999998776666432 67889999887544211
Q ss_pred ----cccc--cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCcc
Q 039311 493 ----SSIE--RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESF 565 (909)
Q Consensus 493 ----~~i~--~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 565 (909)
..+. ..++|+.|++++|......|..++.+++|+.|++ +++.+..+ |..+..+++|+.|++++|
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L---------s~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL---------AQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC---------TTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEEC---------CCCcccccChhHhcCcccCCEEECCCC
Confidence 1122 2368999999999988888888999999999988 45566655 557899999999999984
Q ss_pred ccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCCCCcc
Q 039311 566 MCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCERLHS 643 (909)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~ 643 (909)
. +.......+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+.-..
T Consensus 334 ~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 334 F---LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp C---CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred c---cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 3 3333344577899999999999999975 77899999999999999999988864 58999999999999875544
Q ss_pred cC
Q 039311 644 LP 645 (909)
Q Consensus 644 lp 645 (909)
.|
T Consensus 411 ~~ 412 (455)
T 3v47_A 411 CP 412 (455)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=263.80 Aligned_cols=349 Identities=19% Similarity=0.198 Sum_probs=255.8
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCe
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENL 364 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L 364 (909)
..++.+.+..+.+ ..+.+.+|.++++|+.|++++|.+... .+..+. +++|++|++++|.++.+|.. .+.+|
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSL-----DFHVFLFNQDLEYLDVSHNRLQNISCC-PMASL 123 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECTTSCCCEECSC-CCTTC
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcC-----CHHHhCCCCCCCEEECCCCcCCccCcc-ccccC
Confidence 3455555544444 344567899999999999998875432 233444 78999999999999999988 89999
Q ss_pred eEEEcCCCCccccc--cccccCCCCCEEecCCCcCCCcCCCCCccccc--cccccccccc--cceeccccc---------
Q 039311 365 VSLEMPHSSIKQLW--KGVQRLVNLKHINLSHSEHLTKIPDLSLATNL--ESLNFQGCTC--LLETHSSIQ--------- 429 (909)
Q Consensus 365 ~~L~L~~~~i~~lp--~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L--~~L~L~~c~~--l~~~p~~i~--------- 429 (909)
++|++++|.+..++ ..++++++|++|++++|.+.. .++..+++| ++|++++|.. ....|..+.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 99999999999875 689999999999999987654 346666666 9999999876 444444443
Q ss_pred -----------------CCCcccEeccccccC--------------------------------ccccCccccCCcCcEE
Q 039311 430 -----------------YLNKLVVLNLKHCRS--------------------------------LTSLSTSIHLGSLKKL 460 (909)
Q Consensus 430 -----------------~L~~L~~L~L~~c~~--------------------------------l~~lp~~~~l~~L~~L 460 (909)
.+++|+.|++++|.. +..++......+|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 345677777766420 0011111123478888
Q ss_pred EccCCCCCcccCccc----------------------------------cCcceeeccccCccccCcccccCCCCCEEec
Q 039311 461 ILSGCSNLMSFPELS----------------------------------CNIEELSLDGTAIQEFPSSIERLSSLILLNL 506 (909)
Q Consensus 461 ~Ls~c~~l~~lp~~~----------------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 506 (909)
++++|...+.+|... .+++.|++++|.+..++. .+.+++|++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l 360 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEEC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEEC
Confidence 888776665666543 236666777776654431 268899999999
Q ss_pred cCCCCCCcCcccccCCCCCCeeecccccccccccCcceeec---CccccccCCCCeeecCcccccccccccc-CccCCCC
Q 039311 507 GNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREV---PSSIACLKNLGRLSFESFMCHEQMGLLL-PISFGLT 582 (909)
Q Consensus 507 ~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~ 582 (909)
++|...+.+|..++.+++|+.|++ ++|.+..+ |..+..+++|+.|++++|. +.+... ..+..++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L---------~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~---l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLIL---------QRNGLKNFFKVALMTKNMSSLETLDVSLNS---LNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEEC---------CSSCCCBTTHHHHTTTTCTTCCEEECTTSC---CBSCCSSCCCCCCT
T ss_pred CCCccccchhhhhcccCCCCEEEC---------CCCCcCCcccchhhhcCCCCCCEEECCCCc---CCCccChhhhcCcc
Confidence 999888888999999999999988 44555544 4568899999999999843 332122 2366789
Q ss_pred CCCEEecCCCCCCC-cccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC----CCCcCceecc
Q 039311 583 SLTYLRLTDCGIIE-LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL----PCDLSDIEAH 657 (909)
Q Consensus 583 ~L~~L~Ls~~~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----~~sL~~L~i~ 657 (909)
+|+.|++++|.+.. +|..+. ++|+.|+|++|+++.+|..+..+++|+.|+|++| .++.+|.. .++|+.|++.
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEec
Confidence 99999999999974 454443 7999999999999999999999999999999997 56778763 3456667776
Q ss_pred cCc
Q 039311 658 CCS 660 (909)
Q Consensus 658 ~C~ 660 (909)
+++
T Consensus 506 ~N~ 508 (562)
T 3a79_B 506 DNP 508 (562)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=254.27 Aligned_cols=321 Identities=21% Similarity=0.283 Sum_probs=221.1
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCC
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
.+..+++|+.|++++|.+.+... +. +.+|++|++++|.+..++....+.+|++|++++|.+..++. +..++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred chhhhcCCCEEECCCCccCCchh-------hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 36677888888888776544321 23 67788888888888777764477788888888888887765 77788
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++|++++|.+. .++.++.+++|++|++.++ ...++ .++.+++|++|++++|. +..++....+++|+.|++++|
T Consensus 135 ~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 135 NLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNN 209 (466)
T ss_dssp TCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccC-CChhhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCC
Confidence 8888888877643 4566777888888887532 22333 37788888888888764 556655456788888888887
Q ss_pred CCCcccC-ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 466 SNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 466 ~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
......| ....+|+.|++++|.+..++ .+..+++|+.|++++|......| +..+++|+.|++ +++.+
T Consensus 210 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l---------~~n~l 277 (466)
T 1o6v_A 210 QISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL---------GANQI 277 (466)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC---------CSSCC
T ss_pred cccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC---------CCCcc
Confidence 6544333 23457888888888887764 57778888888888876544333 677777777776 44555
Q ss_pred eecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhh
Q 039311 545 REVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 545 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i 624 (909)
..++. +..+++|+.|++++|.... .+.+..+++|+.|++++|.+.+++. +..+++|+.|++++|+++.++ .+
T Consensus 278 ~~~~~-~~~l~~L~~L~L~~n~l~~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l 349 (466)
T 1o6v_A 278 SNISP-LAGLTALTNLELNENQLED-----ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SL 349 (466)
T ss_dssp CCCGG-GTTCTTCSEEECCSSCCSC-----CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GG
T ss_pred Ccccc-ccCCCccCeEEcCCCcccC-----chhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hh
Confidence 55555 7778888888887733222 2235667888888888888877654 677888888888888887775 67
Q ss_pred ccCCCCCEEeecCCCCCcccC-CCCCCcCceecccCc
Q 039311 625 IQLSHLFSLGISHCERLHSLP-ELPCDLSDIEAHCCS 660 (909)
Q Consensus 625 ~~l~~L~~L~L~~c~~L~~lp-~l~~sL~~L~i~~C~ 660 (909)
..+++|+.|++++|+.....| ...++|+.|++.+|+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred ccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 778888888888875433333 123456666666653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=245.75 Aligned_cols=298 Identities=20% Similarity=0.243 Sum_probs=230.1
Q ss_pred cceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCe
Q 039311 286 EAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENL 364 (909)
Q Consensus 286 ~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L 364 (909)
..++.+.+....+..+ ..+..+++|+.|++.+|.+.+... +. +++|++|++++|.+..+|....+.+|
T Consensus 44 ~~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~~~~~~l~~L 112 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDISALQNLTNL 112 (347)
T ss_dssp TTCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred ccccEEEEeCCccccc----hhhhhcCCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCchHHcCCCcC
Confidence 3455666655544332 358889999999999887654322 33 78999999999999999866688999
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccC
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS 444 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~ 444 (909)
++|++++|.+..++. +..+++|++|++++|.....++.+..+++|++|++++|.... ++. ++.+++|++|++++|.
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~- 188 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQ- 188 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSC-
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCc-
Confidence 999999999999887 889999999999999888888889999999999999987543 333 8899999999999974
Q ss_pred ccccCccccCCcCcEEEccCCCCCcccC-ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCC
Q 039311 445 LTSLSTSIHLGSLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLK 523 (909)
Q Consensus 445 l~~lp~~~~l~~L~~L~Ls~c~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~ 523 (909)
+..++....+++|+.|++++|......+ ....+|++|++++|.+..+|. +..+++|+.|++++|... .++ .+..++
T Consensus 189 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~~~~l~ 265 (347)
T 4fmz_A 189 IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-DIN-AVKDLT 265 (347)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCT
T ss_pred ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC-CCh-hHhcCC
Confidence 6677765579999999999976544322 345689999999999999887 889999999999998543 232 355555
Q ss_pred CCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC-cccccC
Q 039311 524 SLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE-LPECLG 602 (909)
Q Consensus 524 ~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~l~ 602 (909)
+|+.|++.. +.+..+ +.+..+++|+.|++++|.+.. .|..++
T Consensus 266 ~L~~L~l~~---------n~l~~~----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 266 KLKMLNVGS---------NQISDI----------------------------SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp TCCEEECCS---------SCCCCC----------------------------GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CcCEEEccC---------CccCCC----------------------------hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 555555422 222221 234556778888888888775 456678
Q ss_pred CCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 603 QLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 603 ~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 88888888888888887765 7788888888888875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=300.93 Aligned_cols=234 Identities=19% Similarity=0.231 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHHhcCCCC---cccCCccchHHHHHhhCCC--eEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCc
Q 039311 14 LAHLRQILLSAILDDGNV---SIGCPSIGLNFRSKRLSRK--KVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDK 88 (909)
Q Consensus 14 ~~~l~~~ll~~i~~~~~~---~~~~~~~~~~~i~~~L~~k--r~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~ 88 (909)
+....++++..+...... ...+.+.....+++.|.+| |+||||||||+.++|+.+ ++|||||||||++
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCH
Confidence 445566677777532211 1233445666777777766 999999999999888764 6899999999999
Q ss_pred hhhhh-cCCCcEEECCC-CCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHH
Q 039311 89 QVLKN-CGVDTIYEVKE-LFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIK 166 (909)
Q Consensus 89 ~v~~~-~~~~~~y~l~~-L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~ 166 (909)
.|+.. ++...+|+++. |+++||++||...|+.. .+++.+++++|+++|+|+||||+++|++|+++. .+|+..++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~ 343 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLR 343 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHH
Confidence 99955 56678999996 99999999999999543 345567899999999999999999999999876 57999999
Q ss_pred HHhcCCC-----------cchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcccchhHhhhccc
Q 039311 167 KIKRIPH-----------VDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAEIGISVLVDKCL 233 (909)
Q Consensus 167 ~L~~~~~-----------~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~~~i~~L~~~~l 233 (909)
++..... ..+..++.+||+.|++++|.||+|||+||.++ +++.++.+|.+++..++.++++|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl 423 (1249)
T 3sfz_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423 (1249)
T ss_dssp HHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccc
Confidence 9976542 24889999999999999999999999999987 8999999999888888899999999999
Q ss_pred cEEe-CC---eEEehHHHHHHHHHHhhhc
Q 039311 234 MVIL-NN---KIMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 234 i~~~-~~---~~~mhdll~e~~~~i~~~~ 258 (909)
|+.. ++ .|.|||++|+++++.+.++
T Consensus 424 ~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred eEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9987 44 3999999999999887654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=250.21 Aligned_cols=317 Identities=20% Similarity=0.242 Sum_probs=254.7
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCC
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L 387 (909)
..+++++.|.+.++.+... .++. +++|++|++++|.++.+|....+.+|++|++++|.+..++. +.++++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l-------~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSI-------DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hHhccccEEecCCCCCccC-------cchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCC
Confidence 3467899999987654322 2334 78999999999999999884488999999999999999887 9999999
Q ss_pred CEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCC
Q 039311 388 KHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSN 467 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~ 467 (909)
++|++++|.+.. ++.+..+++|++|++++|... .++ .++.+++|++|++++ .+..++...++++|+.|++++|..
T Consensus 115 ~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 115 TGLTLFNNQITD-IDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNKV 189 (466)
T ss_dssp CEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCC-ChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCcC
Confidence 999999997544 555999999999999998644 444 589999999999974 455555555799999999999863
Q ss_pred CcccCc--cccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCccee
Q 039311 468 LMSFPE--LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR 545 (909)
Q Consensus 468 l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~ 545 (909)
..++. ...+|++|++++|.+..++. ++.+++|+.|++++|... .++ .+..+++|+.|++ +++.+.
T Consensus 190 -~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l---------~~n~l~ 256 (466)
T 1o6v_A 190 -SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDL---------ANNQIS 256 (466)
T ss_dssp -CCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEEC---------CSSCCC
T ss_pred -CCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEEC---------CCCccc
Confidence 33433 34689999999999998866 888999999999998644 343 4778888888887 445566
Q ss_pred ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhc
Q 039311 546 EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESII 625 (909)
Q Consensus 546 ~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~ 625 (909)
.++. +..+++|+.|++++|.... .+.+..+++|+.|++++|.+..++. ++.+++|+.|++++|+++.++. +.
T Consensus 257 ~~~~-~~~l~~L~~L~l~~n~l~~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~ 328 (466)
T 1o6v_A 257 NLAP-LSGLTKLTELKLGANQISN-----ISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VS 328 (466)
T ss_dssp CCGG-GTTCTTCSEEECCSSCCCC-----CGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GG
T ss_pred cchh-hhcCCCCCEEECCCCccCc-----cccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hc
Confidence 6655 8889999999999843332 2237789999999999999998766 7899999999999999997775 78
Q ss_pred cCCCCCEEeecCCCCCcccCC--CCCCcCceecccCc
Q 039311 626 QLSHLFSLGISHCERLHSLPE--LPCDLSDIEAHCCS 660 (909)
Q Consensus 626 ~l~~L~~L~L~~c~~L~~lp~--l~~sL~~L~i~~C~ 660 (909)
.+++|+.|++++| .+..++. ..++|+.|++.+|.
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCc
Confidence 9999999999998 4665553 34588889998885
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=256.42 Aligned_cols=331 Identities=15% Similarity=0.135 Sum_probs=241.4
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC-CCCCeeEEEcCCCCccccccccccCCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLK 388 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~ 388 (909)
++|+.|++++|.+..... ..+. +++|++|++++|.++.++ ..| .+.+|++|++++|.++.+|.. .+++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSISELRM-----PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCCCCCCG-----GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEEECCCCCccccCh-----hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 789999999887654321 2334 789999999999999985 445 789999999999999999987 899999
Q ss_pred EEecCCCcCCCc-CC-CCCccccccccccccccccceecccccCCCcc--cEeccccccC--ccccCccc----------
Q 039311 389 HINLSHSEHLTK-IP-DLSLATNLESLNFQGCTCLLETHSSIQYLNKL--VVLNLKHCRS--LTSLSTSI---------- 452 (909)
Q Consensus 389 ~L~Ls~~~~l~~-~p-~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L--~~L~L~~c~~--l~~lp~~~---------- 452 (909)
+|++++|.+... .| .++++++|++|++++|.... ..++.+++| ++|++++|.. ....|..+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEE
Confidence 999999987663 34 48999999999999987654 345555565 9999998754 22222211
Q ss_pred -----------------cCCcCcEEEccCCCCC-----------ccc---------------------Cc--cccCccee
Q 039311 453 -----------------HLGSLKKLILSGCSNL-----------MSF---------------------PE--LSCNIEEL 481 (909)
Q Consensus 453 -----------------~l~~L~~L~Ls~c~~l-----------~~l---------------------p~--~~~~L~~L 481 (909)
.+++|+.|++++|... ... +. ...+|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 3567777777775310 000 00 11278899
Q ss_pred eccccCcc-ccCccc-----ccC--------------------------CCCCEEeccCCCCCCcCcccccCCCCCCeee
Q 039311 482 SLDGTAIQ-EFPSSI-----ERL--------------------------SSLILLNLGNCLRLEGLPSKICKLKSLERLN 529 (909)
Q Consensus 482 ~L~~~~i~-~lp~~i-----~~l--------------------------~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~ 529 (909)
++++|.+. .+|..+ ..+ .+|+.|++++|..... + ..+.+++|+.|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM-V-CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc-c-CccCCCCceEEE
Confidence 99999988 788766 333 3477777777754221 1 126778888887
Q ss_pred cccccccccccCcceee-cCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC-cccc-cCCCCC
Q 039311 530 LAEALKELKAEGIAIRE-VPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE-LPEC-LGQLSS 606 (909)
Q Consensus 530 l~~~l~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~-l~~l~~ 606 (909)
+ +++.+.. +|..++.+++|+.|++++|....+. .....+..+++|+.|++++|.+.. +|.. +..+++
T Consensus 360 l---------~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 360 F---------TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF-KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp C---------CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT-HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred C---------CCCccccchhhhhcccCCCCEEECCCCCcCCcc-cchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 7 4455554 6778999999999999984333211 112236789999999999999997 7764 788999
Q ss_pred CcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccCc
Q 039311 607 RSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSGL 668 (909)
Q Consensus 607 L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~ 668 (909)
|+.|++++|+++ .+|..+. ++|+.|++++| .++.+|. -.++|+.|++.++ .|+.++..
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 999999999997 5554433 79999999998 6788886 3468999999987 46666653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=244.97 Aligned_cols=296 Identities=11% Similarity=0.099 Sum_probs=141.4
Q ss_pred CCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNF 415 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 415 (909)
.++++|+++++.++.+|..+ .+++|++|++++|.+..++. .+..+++|++|++++|.+....|. ++.+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 34444444444444444432 33444444444444444432 344444444444444443333333 344444444444
Q ss_pred ccccccceeccc-ccCCCcccEeccccccCccccC-ccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccC
Q 039311 416 QGCTCLLETHSS-IQYLNKLVVLNLKHCRSLTSLS-TSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP 492 (909)
Q Consensus 416 ~~c~~l~~~p~~-i~~L~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp 492 (909)
++|... .+|.. ++.+++|++|++++|. +..++ ..+ ++++|+.|++++|.....-...+.+|+.|++++|.+..++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 444322 33322 2444444444444432 22222 112 2444444444444322221223334444444444444322
Q ss_pred cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccc
Q 039311 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 572 (909)
..++|+.|++++|... .+|.. ..++|+.|++ +++.+... ..+..+++|+.|++++| .+.+
T Consensus 203 ----~~~~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l---------~~n~l~~~-~~l~~l~~L~~L~Ls~n---~l~~ 262 (390)
T 3o6n_A 203 ----IPIAVEELDASHNSIN-VVRGP--VNVELTILKL---------QHNNLTDT-AWLLNYPGLVEVDLSYN---ELEK 262 (390)
T ss_dssp ----CCSSCSEEECCSSCCC-EEECC--CCSSCCEEEC---------CSSCCCCC-GGGGGCTTCSEEECCSS---CCCE
T ss_pred ----CCCcceEEECCCCeee-ecccc--ccccccEEEC---------CCCCCccc-HHHcCCCCccEEECCCC---cCCC
Confidence 2234555555554322 22221 1233444433 33333333 24556666666666652 2222
Q ss_pred cccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC-CCCCCc
Q 039311 573 LLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP-ELPCDL 651 (909)
Q Consensus 573 ~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp-~l~~sL 651 (909)
.....+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|++..+|..+..+++|+.|+|++|+ ++.+| ..+++|
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~L 341 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTL 341 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCCC
T ss_pred cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeCchhhccC
Confidence 2233455677777777777777777666667777777777777777777777777777777777764 34333 233344
Q ss_pred Cceeccc
Q 039311 652 SDIEAHC 658 (909)
Q Consensus 652 ~~L~i~~ 658 (909)
+.|++.+
T Consensus 342 ~~L~l~~ 348 (390)
T 3o6n_A 342 KNLTLSH 348 (390)
T ss_dssp SEEECCS
T ss_pred CEEEcCC
Confidence 5554444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-24 Score=259.53 Aligned_cols=178 Identities=22% Similarity=0.225 Sum_probs=97.9
Q ss_pred cceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCc-ccccCCCCCCeeecccccccccccCcceeecC-cccccc
Q 039311 478 IEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLP-SKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACL 554 (909)
Q Consensus 478 L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l 554 (909)
|+.|++++|.+..+ |..+..+++|+.|++++|...+.+| ..+..+++|+.| +++++.+..++ ..+..+
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L---------~Ls~n~l~~~~~~~~~~~ 453 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI---------YLSYNKYLQLTRNSFALV 453 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEE---------ECCSCSEEECCTTTTTTC
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEE---------ecCCCCcceeChhhhhcC
Confidence 33334444444332 2234444444444444443333333 234444444444 44555555443 346667
Q ss_pred CCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCeecch---------hh
Q 039311 555 KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPE---------SI 624 (909)
Q Consensus 555 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~---------~i 624 (909)
++|+.|+++++.+... +..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+++.++. .+
T Consensus 454 ~~L~~L~l~~n~l~~~-~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~ 532 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNV-DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532 (680)
T ss_dssp TTCCEEECTTSCCBCT-TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTT
T ss_pred cccccchhcccccccc-ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhh
Confidence 7777777776443222 1223345667777777777777776554 46777777777777777775432 25
Q ss_pred ccCCCCCEEeecCCCCCcccCC----CCCCcCceecccCcccccccC
Q 039311 625 IQLSHLFSLGISHCERLHSLPE----LPCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 625 ~~l~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C~~L~~l~~ 667 (909)
..+++|+.|+|++| .++.+|. -.++|+.|++.++ .|+.++.
T Consensus 533 ~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 533 KGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA 577 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCH
Confidence 66777777777775 4556663 2346677777554 4555443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=268.17 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=169.8
Q ss_pred CcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-CCCC-CC
Q 039311 285 TEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-SSKI-PP 361 (909)
Q Consensus 285 ~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-p~~~-~~ 361 (909)
...++.+.+..+.+. .+.+..|.++++|++|++++|.... ...+..+. +++|++|++++|.+..+ |..+ .+
T Consensus 23 p~~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 345666666655554 3446788999999999999774311 11134445 78899999999998887 5566 78
Q ss_pred CCeeEEEcCCCCccc-cccc--cccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCC--Ccc
Q 039311 362 ENLVSLEMPHSSIKQ-LWKG--VQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYL--NKL 434 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~-lp~~--~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L--~~L 434 (909)
.+|++|+|++|.+.. +|.. +.++++|++|+|++|.+....+. ++++++|++|++++|......+..++.+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 899999999998875 4544 88899999999999987766553 8889999999999987777677777766 778
Q ss_pred cEeccccccCccccCccc-cCC------cCcEEEccCCCCCcccCcc---------------------------------
Q 039311 435 VVLNLKHCRSLTSLSTSI-HLG------SLKKLILSGCSNLMSFPEL--------------------------------- 474 (909)
Q Consensus 435 ~~L~L~~c~~l~~lp~~~-~l~------~L~~L~Ls~c~~l~~lp~~--------------------------------- 474 (909)
+.|++++|......|..+ .+. +|+.|++++|......+..
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 888888765544444332 122 3778888776433222110
Q ss_pred --------ccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecc
Q 039311 475 --------SCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLA 531 (909)
Q Consensus 475 --------~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~ 531 (909)
..+|+.|++++|.+..+ |..+..+++|+.|+|++|......|..++.+++|+.|++.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 13577778887777755 4557778888888888877666666677777777777763
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=275.42 Aligned_cols=220 Identities=13% Similarity=0.160 Sum_probs=173.0
Q ss_pred hhccCChHHHHHHHHHHHhc-CCC----Cc-----ccCCccchHHHHHhh---CCCeEEEEEeCCCCHHHHHHHhhccCC
Q 039311 8 SEKSGGLAHLRQILLSAILD-DGN----VS-----IGCPSIGLNFRSKRL---SRKKVLIVFDDVSTSEQMEFLIGNQGW 74 (909)
Q Consensus 8 s~~~~~~~~l~~~ll~~i~~-~~~----~~-----~~~~~~~~~~i~~~L---~~kr~LlVLDDv~~~~~~~~l~~~~~~ 74 (909)
++. ++...+.+.|+..+.. ... .+ ..+.+.+...+++.| .+||+||||||||+.++|+.+.
T Consensus 190 s~~-~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~----- 263 (1221)
T 1vt4_I 190 KNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----- 263 (1221)
T ss_dssp CCS-SSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-----
T ss_pred CCC-CCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-----
Confidence 344 5666777776664321 000 00 112234456677755 7899999999999999998752
Q ss_pred CCCCCEEEEEeCCchhhhhcCCCcEEECC------CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHH
Q 039311 75 LMQGSRLIITARDKQVLKNCGVDTIYEVK------ELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 75 ~~~gSrIivTTR~~~v~~~~~~~~~y~l~------~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
+|||||||||++.++..++...+|+|+ +|+.+|||+||+++ |+.. ..+++.+| |+|+||||++
T Consensus 264 --pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-----~eeL~~eI---CgGLPLALkL 332 (1221)
T 1vt4_I 264 --LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-----PQDLPREV---LTTNPRRLSI 332 (1221)
T ss_dssp --SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-----TTTHHHHH---CCCCHHHHHH
T ss_pred --CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-----HHHHHHHH---hCCCHHHHHH
Confidence 799999999999999766444567777 99999999999998 4432 23444554 9999999999
Q ss_pred HhHhhcCC--CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhh-hhhheeeeeccCCC--CHHHHHHHHHhcCC-Ccc
Q 039311 149 LGRFLCGR--RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEE-QNLFLDIASFFKGE--DKDCVIKFLDGCGF-SAE 222 (909)
Q Consensus 149 lg~~L~~~--~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~-k~cfl~~a~f~~~~--~~~~li~~w~~~g~-~~~ 222 (909)
+|+.|+++ +.++|+.. ....+..+|++||+.||+++ |.||+|||+||.++ +.+.++.+|+++|. .++
T Consensus 333 aGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe 405 (1221)
T 1vt4_I 333 IAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405 (1221)
T ss_dssp HHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHH
T ss_pred HHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHH
Confidence 99999987 68899764 35679999999999999999 99999999999987 68889999999874 366
Q ss_pred cchhHhhhccccEEe--CCeEEehHHHHHHH
Q 039311 223 IGISVLVDKCLMVIL--NNKIMMHDLLQEMG 251 (909)
Q Consensus 223 ~~i~~L~~~~li~~~--~~~~~mhdll~e~~ 251 (909)
.++++|+++|||+.. .++++|||++++++
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 789999999999986 46799999998855
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=257.03 Aligned_cols=301 Identities=16% Similarity=0.159 Sum_probs=165.8
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCccccccc-cccCCC
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWKG-VQRLVN 386 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~~-~~~L~~ 386 (909)
+.+++.|++.++.+...+.. .+. +++|++|++++|.+..+|. .+ .+.+|++|+|++|.+..++.. ++.+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA-----LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTH-----HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHH-----HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 45667777665543221111 011 4567777777777666654 33 566777777777776666543 466777
Q ss_pred CCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 387 LKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 387 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
|++|+|++|.+....+. ++.+++|++|++++|......|..++.+++|++|++++|. ++.++ ...+++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC-GGGCTTCSEEECCSS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC-hhhhhhhhhhhcccC
Confidence 77777777665543333 4667777777777766555555566667777777776643 44433 123666666766665
Q ss_pred CCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCccee
Q 039311 466 SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR 545 (909)
Q Consensus 466 ~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~ 545 (909)
... .++ ...+|+.|++++|.+..+|..+. ++|+.|+|++|.... +..++.+++|+.|++. +|.+.
T Consensus 203 ~l~-~l~-~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls---------~N~l~ 267 (597)
T 3oja_B 203 LLS-TLA-IPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLS---------YNELE 267 (597)
T ss_dssp CCS-EEE-CCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECC---------SSCCC
T ss_pred ccc-ccc-CCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECC---------CCccC
Confidence 322 221 22356666666666665554432 466666666664433 2345555555555552 33333
Q ss_pred ec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhh
Q 039311 546 EV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 546 ~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i 624 (909)
.+ |..++.+++|+.|++++|.... .......+++|+.|+|++|.+..+|..++.+++|+.|+|++|.++.+| +
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~ 341 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--L 341 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE----EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--C
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC----CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--h
Confidence 32 4455555555555555522211 122233455555555555555555555555555555555555555544 4
Q ss_pred ccCCCCCEEeecCCC
Q 039311 625 IQLSHLFSLGISHCE 639 (909)
Q Consensus 625 ~~l~~L~~L~L~~c~ 639 (909)
..+++|+.|+|++|+
T Consensus 342 ~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 342 STHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCCSEEECCSSC
T ss_pred hhcCCCCEEEeeCCC
Confidence 445555555555553
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=248.51 Aligned_cols=288 Identities=19% Similarity=0.198 Sum_probs=200.3
Q ss_pred CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcCCC-CCccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLN 414 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 414 (909)
+..+++|++++|.++.++. .| .+.+|++|+|++|.+..+ |..+.++++|++|+|++|.+....+. +.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4567788888888777753 34 677888888888888776 56677888888888888775544443 67788888888
Q ss_pred cccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCc----cccCcceeeccccCcc
Q 039311 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE----LSCNIEELSLDGTAIQ 489 (909)
Q Consensus 415 L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~i~ 489 (909)
+++|......+..++.+++|++|++++|......+..+ ++++|+.|++++|... .++. ...+|+.|++++|.+.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCc
Confidence 88877666667777888888888888754333223333 4778888888876433 3332 3456777778877777
Q ss_pred ccCc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCcccc
Q 039311 490 EFPS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMC 567 (909)
Q Consensus 490 ~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 567 (909)
.++. .+..+++|+.|++++|.....+|.......+|+.|++ +++.+..+|. .+..+++|+.|++++|.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l---------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~- 259 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI---------THCNLTAVPYLAVRHLVYLRFLNLSYNP- 259 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE---------ESSCCCSCCHHHHTTCTTCCEEECCSSC-
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC---------cCCcccccCHHHhcCccccCeeECCCCc-
Confidence 6654 5777888888888888777777776666666666665 4455666663 46777788888887733
Q ss_pred ccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 568 HEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 568 ~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+.......+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 260 --l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 260 --ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp --CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred --CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 2222333456677888888888877764 56777788888888888887776653 4667778888877764
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=260.67 Aligned_cols=326 Identities=17% Similarity=0.139 Sum_probs=239.0
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCC-CCCcc-CCCC-CCCCeeEEEcCCCCcccc-ccccccC
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGC-PLKSL-SSKI-PPENLVSLEMPHSSIKQL-WKGVQRL 384 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~-~l~~l-p~~~-~~~~L~~L~L~~~~i~~l-p~~~~~L 384 (909)
..++|+.|++++|.+... .+..+. +.+|++|++++| .+..+ |..+ .+.+|++|+|++|.+..+ |..+.++
T Consensus 22 lp~~l~~LdLs~N~i~~i-----~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-----TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-----CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCcc-----ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 457899999998876432 233445 899999999999 45666 5556 789999999999999987 7789999
Q ss_pred CCCCEEecCCCcCCCcCCC---CCccccccccccccccccceec-ccccCCCcccEeccccccCccccCccc-cC--CcC
Q 039311 385 VNLKHINLSHSEHLTKIPD---LSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI-HL--GSL 457 (909)
Q Consensus 385 ~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l--~~L 457 (909)
++|++|+|++|.+...+|. +..+++|++|++++|......+ ..++.+++|++|++++|......+..+ .+ ++|
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 9999999999988775553 8899999999999988765544 578999999999999976444445544 34 899
Q ss_pred cEEEccCCCCCcccCcccc---------CcceeeccccCcc-ccCccccc------------------------------
Q 039311 458 KKLILSGCSNLMSFPELSC---------NIEELSLDGTAIQ-EFPSSIER------------------------------ 497 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~~~---------~L~~L~L~~~~i~-~lp~~i~~------------------------------ 497 (909)
+.|++++|......|.... .|+.|++++|.+. .+|..+..
T Consensus 177 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred ceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 9999999877666554322 3889999998665 33332221
Q ss_pred --------CCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCccccc
Q 039311 498 --------LSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCH 568 (909)
Q Consensus 498 --------l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~ 568 (909)
.++|+.|++++|......|..++.+++|+.|++ ++|.+..+ |..+..+++|+.|++++|.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---------~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-- 325 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL---------AYNKINKIADEAFYGLDNLQVLNLSYNL-- 325 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE---------ESCCCCEECTTTTTTCSSCCEEEEESCC--
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC---------CCCcCCCCChHHhcCCCCCCEEECCCCC--
Confidence 257888888888777666777888888888877 34455544 4467788888888888733
Q ss_pred cccccccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC
Q 039311 569 EQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647 (909)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 647 (909)
+.......+..+++|+.|++++|.+..++. .+..+++|+.|+|++|.++.++. +++|+.|++++| .+..+|..
T Consensus 326 -l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~~ 399 (844)
T 3j0a_A 326 -LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPKI 399 (844)
T ss_dssp -CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCCC
T ss_pred -CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCC-Cccccccc
Confidence 333333456678888888888888876543 57778888888888888876653 677777877775 34566655
Q ss_pred CCCcCceecc
Q 039311 648 PCDLSDIEAH 657 (909)
Q Consensus 648 ~~sL~~L~i~ 657 (909)
..+++.|++.
T Consensus 400 ~~~l~~L~ls 409 (844)
T 3j0a_A 400 NLTANLIHLS 409 (844)
T ss_dssp CTTCCEEECC
T ss_pred ccccceeecc
Confidence 4444444443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=238.29 Aligned_cols=302 Identities=16% Similarity=0.158 Sum_probs=237.6
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccccc-ccccCC
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWK-GVQRLV 385 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~-~~~~L~ 385 (909)
.+.+++.|++.++.+...+..+ +. +++|++|+++++.+..++. .+ .+.+|++|++++|.+..++. .+..++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~-----~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAAL-----LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHH-----HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhH-----hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 4678999999876543322111 22 6789999999999988876 44 78899999999999998864 478899
Q ss_pred CCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 386 NLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+|++|++++|.+....+. +..+++|++|++++|......+..++.+++|++|++++|. ++.++ ...+++|+.|++++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHANVSY 195 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC-GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc-cccccccceeeccc
Confidence 999999999986644444 6889999999999987766667778999999999999864 55543 23588999999998
Q ss_pred CCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 465 CSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 465 c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
|.. ..++ ...++++|++++|.+..+|..+ .++|+.|++++|.... . ..++.+++|+.|++ +++.+
T Consensus 196 n~l-~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L---------s~n~l 260 (390)
T 3o6n_A 196 NLL-STLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD-T-AWLLNYPGLVEVDL---------SYNEL 260 (390)
T ss_dssp SCC-SEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCC-C-GGGGGCTTCSEEEC---------CSSCC
T ss_pred ccc-cccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcc-c-HHHcCCCCccEEEC---------CCCcC
Confidence 643 3332 3357899999999999887654 5789999999986554 3 46788888888887 44555
Q ss_pred eec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchh
Q 039311 545 REV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623 (909)
Q Consensus 545 ~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 623 (909)
..+ |..+..+++|+.|++++|.... .......+++|+.|+|++|.+..+|..+..+++|+.|++++|.++.+|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCE----EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred CCcChhHccccccCCEEECCCCcCcc----cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--
Confidence 554 6778899999999999844322 233356689999999999999999999999999999999999999887
Q ss_pred hccCCCCCEEeecCCC
Q 039311 624 IIQLSHLFSLGISHCE 639 (909)
Q Consensus 624 i~~l~~L~~L~L~~c~ 639 (909)
+..+++|+.|++++|+
T Consensus 335 ~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCCSEEECCSSC
T ss_pred chhhccCCEEEcCCCC
Confidence 7789999999999985
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=240.50 Aligned_cols=271 Identities=21% Similarity=0.234 Sum_probs=165.0
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
++|++|++++|.++.+|..+ .+|++|++++|.+..++.. .++|++|++++|.+.. +|+++.+++|++|++++|.
T Consensus 91 ~~L~~L~l~~n~l~~lp~~~--~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TTCSEEECCSSCCSSCCCCC--TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCcccccc--CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc
Confidence 45666666666666666432 5666666666666655432 1466666666665443 5566666666666666654
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
.. .+|..+ .+|++|++++| .++.+|...++++|+.|++++|.. ..+|....+|++|++++|.+..+|. ++.++
T Consensus 165 l~-~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~ 237 (454)
T 1jl5_A 165 LK-KLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGNNILEELPE-LQNLP 237 (454)
T ss_dssp CS-CCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSSCCSSCCC-CTTCT
T ss_pred Cc-ccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCcC-CcCCCCcCcccEEECcCCcCCcccc-cCCCC
Confidence 32 344332 36666666664 344555433566666666666543 3355555566666666666666663 66666
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeeccc-----------ccccccccCcceeecCccccccCCCCeeecCccccc
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-----------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCH 568 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~-----------~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 568 (909)
+|+.|++++|.. ..+|.. +++|+.|++.. +++.|++++|.+..+|.. .++|+.|++++|...
T Consensus 238 ~L~~L~l~~N~l-~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 238 FLTTIYADNNLL-KTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIR 310 (454)
T ss_dssp TCCEEECCSSCC-SSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcC-Cccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCC
Confidence 666666666643 234432 34555555532 244555566666655432 256777777763322
Q ss_pred cccccccCccCCC-CCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 569 EQMGLLLPISFGL-TSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 569 ~~~~~~~~~~~~l-~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
. +..+ ++|+.|++++|.+..+|.. +++|+.|++++|+++.+|. .+++|+.|++++|+ +..+|
T Consensus 311 ~--------i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~ 373 (454)
T 1jl5_A 311 S--------LCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFP 373 (454)
T ss_dssp E--------ECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCC
T ss_pred c--------ccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC-CCcCC
Confidence 1 1122 5888888888888877764 5788888888888888886 47888888888864 44433
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=243.05 Aligned_cols=306 Identities=18% Similarity=0.166 Sum_probs=242.5
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
-+.++.++..++.+|..+. .++++|+|++|.+..++ ..+.++++|++|+|++|.+....|. +.++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3567788888999998774 68999999999999885 6789999999999999987777675 9999999999999987
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCc---cccCcceeeccccCccccCcc-
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGTAIQEFPSS- 494 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~lp~~- 494 (909)
.....+..++.+++|++|++++|......+..+ ++++|+.|++++|......+. ...+|++|++++|.+..+|..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 554334467899999999999976544445555 599999999999866544443 345799999999999988764
Q ss_pred cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccc
Q 039311 495 IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
+.++++|+.|++++|......+..+..+++|+.|++..+ .....+|.......+|+.|++++|. +....
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~--------~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~ 240 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW--------PYLDTMTPNCLYGLNLTSLSITHCN---LTAVP 240 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC--------TTCCEECTTTTTTCCCSEEEEESSC---CCSCC
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC--------ccccccCcccccCccccEEECcCCc---ccccC
Confidence 889999999999999877766677899999999988543 2345667666667799999999843 33222
Q ss_pred cCccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEeecCCCCCcccCC----CC
Q 039311 575 LPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGISHCERLHSLPE----LP 648 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----l~ 648 (909)
...+..+++|+.|+|++|.+..++ ..+..+++|+.|+|++|++..+ |..+..+++|+.|+|++| .++.+|. ..
T Consensus 241 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 319 (477)
T 2id5_A 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSV 319 (477)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCG
T ss_pred HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCC
Confidence 224677899999999999998754 4678999999999999999965 668889999999999997 5666664 23
Q ss_pred CCcCceecccCc
Q 039311 649 CDLSDIEAHCCS 660 (909)
Q Consensus 649 ~sL~~L~i~~C~ 660 (909)
++|+.|++.+++
T Consensus 320 ~~L~~L~l~~N~ 331 (477)
T 2id5_A 320 GNLETLILDSNP 331 (477)
T ss_dssp GGCCEEECCSSC
T ss_pred cccCEEEccCCC
Confidence 456666665543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=249.23 Aligned_cols=290 Identities=14% Similarity=0.137 Sum_probs=242.4
Q ss_pred EeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccc
Q 039311 301 IHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQL 377 (909)
Q Consensus 301 ~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l 377 (909)
..++...|.++++|+.|++.+|.+.+. .+..+. +.+|++|++++|.+..+|... .+.+|++|+|++|.+..+
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCC-----ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 345567789999999999998875432 222444 889999999999999998754 789999999999999999
Q ss_pred ccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCC
Q 039311 378 WKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLG 455 (909)
Q Consensus 378 p~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~ 455 (909)
|.. +..+++|++|+|++|.+....|. ++.+++|++|++++|.... + .++.+++|+.|++++|. +..++ ...
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~--~~~~l~~L~~L~l~~n~-l~~l~---~~~ 211 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V--DLSLIPSLFHANVSYNL-LSTLA---IPI 211 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-C--CGGGCTTCSEEECCSSC-CSEEE---CCT
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-c--ChhhhhhhhhhhcccCc-ccccc---CCc
Confidence 977 48999999999999998877775 9999999999999987543 3 36788999999999964 44433 357
Q ss_pred cCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccc
Q 039311 456 SLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALK 535 (909)
Q Consensus 456 ~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~ 535 (909)
+|+.|++++|......+....+|+.|++++|.+... .+++.+++|+.|+|++|...+..|..++.+++|+.|++
T Consensus 212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L----- 285 (597)
T 3oja_B 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI----- 285 (597)
T ss_dssp TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC-----
T ss_pred hhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC-----
Confidence 899999999876554445567899999999999985 67999999999999999888888999999999999988
Q ss_pred cccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCC
Q 039311 536 ELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKN 615 (909)
Q Consensus 536 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n 615 (909)
++|.+..+|..+..+++|+.|++++|... ..++.+..+++|+.|+|++|.+..++ +..+++|+.|+|++|
T Consensus 286 ----s~N~l~~l~~~~~~l~~L~~L~Ls~N~l~----~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 286 ----SNNRLVALNLYGQPIPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp ----TTSCCCEEECSSSCCTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred ----CCCCCCCCCcccccCCCCcEEECCCCCCC----ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 55677788888888999999999984433 23344667899999999999999875 788999999999999
Q ss_pred CCe
Q 039311 616 NFE 618 (909)
Q Consensus 616 ~l~ 618 (909)
.+.
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 988
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=238.13 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=114.6
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCC
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
.+.++++|+.|++++|.+.+.+ ++. +++|++|++++|.++.+| ...+.+|++|++++|.+..++ ++.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-------~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-------GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-------TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred ChhHcCCCCEEEccCCCcccCh-------hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCC
Confidence 4566777777777766544321 233 567777777777777665 335667777777777777664 66677
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++|++++|.+.. +| ++.+++|++|++++|.... + .++.+++|++|++++|..+..++ ...+++|+.|++++|
T Consensus 107 ~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCC
Confidence 77777777765443 33 6666777777777665433 3 25666666666666665555542 224566666666654
Q ss_pred CCCcccC-ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 466 SNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 466 ~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
...+ +| ....+|+.|++++|.++.++ ++.+++|+.|++++|...+ +| ++.+++|+.|++
T Consensus 181 ~l~~-l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 181 KITE-LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp CCCC-CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred ccce-eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 3222 22 12234555555555555442 4455555555555543322 33 444444444444
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=237.24 Aligned_cols=288 Identities=19% Similarity=0.180 Sum_probs=171.9
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCC
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
.|..+++|+.|++++|.+.+. . +. +++|++|++++|.++.+| ...+.+|++|++++|.+..+| ++.++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-------~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~ 127 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-------D-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNP 127 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-------C-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred hhcccCCCCEEEccCCcCCeE-------c-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence 567777777777777665432 1 23 667777777777777765 336677777777777777765 67777
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCC
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++|++++|.+.. + +++.+++|++|++++|.....+ .++.+++|++|++++| .++.+| ...+++|+.|++++|
T Consensus 128 ~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 128 LLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDTN 201 (457)
T ss_dssp TCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCSS
T ss_pred cCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcCC
Confidence 77777777776544 3 3677777777777777655555 4667777777777775 355565 335777777777776
Q ss_pred CCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc-ccccccccCcc-
Q 039311 466 SNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE-ALKELKAEGIA- 543 (909)
Q Consensus 466 ~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~-~l~~L~l~~~~- 543 (909)
.....--....+|+.|++++|.+..+| ++.+++|+.|++++|...+ +| ++.+++|+.|++.. +++.++++++.
T Consensus 202 ~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~-~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 202 NITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp CCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred cCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCC-cC--HHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 543321123456777777777777776 6777777777777774433 33 45566666666532 12233333222
Q ss_pred eeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchh
Q 039311 544 IREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623 (909)
Q Consensus 544 ~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 623 (909)
.+.+| .+.+++|+.|++++ | ..+..+..+.+.+..+ .+.++++|+.|++++|+++.++
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~--n--------------~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~-- 334 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTH--N--------------TQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD-- 334 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTT--C--------------TTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC--
T ss_pred CCccc--ccccccCCEEECCC--C--------------cccceeccCCCcceEe--chhhcccCCEEECCCCcccccc--
Confidence 11111 12223333333322 0 0112222222222222 2456677777777777777664
Q ss_pred hccCCCCCEEeecCC
Q 039311 624 IIQLSHLFSLGISHC 638 (909)
Q Consensus 624 i~~l~~L~~L~L~~c 638 (909)
+..+++|+.|++++|
T Consensus 335 l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCTTCSEEECCSS
T ss_pred cccCCcCcEEECCCC
Confidence 667777777777775
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=243.15 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=100.5
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPEN 363 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~~ 363 (909)
.++.+.+..+.+ ..+.+.+|.++++|++|++++|.+.... +..+. +++|++|++++|.++.+|.. | .+.+
T Consensus 53 ~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-----~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIE-----DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcC-----hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 445444444443 4456778999999999999988654321 23344 78899999999999999864 4 7889
Q ss_pred eeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCc-CCC-CCccccccccccccccccceeccccc
Q 039311 364 LVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTK-IPD-LSLATNLESLNFQGCTCLLETHSSIQ 429 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~ 429 (909)
|++|++++|+++.++. .++++++|++|++++|.+... .|. ++.+++|++|++++|......+..++
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 9999999999998885 478899999999999886543 444 77889999999998865444444443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-23 Score=235.30 Aligned_cols=329 Identities=19% Similarity=0.179 Sum_probs=212.9
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CC-------------CccEEEeeCCCC
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-ST-------------ELRYLQWHGCPL 352 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~-------------~Lr~L~l~~~~l 352 (909)
.++.+.+..+.+..+ +.++.++++|+.|++++|.+.+ ..+..+. +. .+++|+++++.+
T Consensus 12 ~L~~L~l~~n~l~~i---P~~i~~L~~L~~L~l~~n~~~~-----~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEM---PVEAENVKSKTEYYNAWSEWER-----NAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHH-----TSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cchhhhcccCchhhC---ChhHhcccchhhhhccCCcccc-----cCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 344444444444332 3568999999999998765432 2233333 33 359999999999
Q ss_pred CccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCC
Q 039311 353 KSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLN 432 (909)
Q Consensus 353 ~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~ 432 (909)
+.+|.. +.+|++|++++|.++.+|.. +.+|++|++++|.+. .+|.+. ++|++|++++|... .+| .++.++
T Consensus 84 ~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~-~l~~~~--~~L~~L~L~~n~l~-~lp-~~~~l~ 153 (454)
T 1jl5_A 84 SSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSDLP--PLLEYLGVSNNQLE-KLP-ELQNSS 153 (454)
T ss_dssp SCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCSCC--TTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred ccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccC-cccCCC--CCCCEEECcCCCCC-CCc-ccCCCC
Confidence 999883 47999999999999999864 489999999998754 444432 79999999998765 477 699999
Q ss_pred cccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc--cccCcceeeccccCccccCcccccCCCCCEEeccCCC
Q 039311 433 KLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE--LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 433 ~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 510 (909)
+|++|++++|. ++.+|.. ..+|++|++++|.. ..+|. ...+|+.|++++|.+..+|... ++|+.|++++|.
T Consensus 154 ~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~l-~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 154 FLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQL-EELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp TCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC
T ss_pred CCCEEECCCCc-CcccCCC--cccccEEECcCCcC-CcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc
Confidence 99999999974 6667754 46999999999854 44664 2457899999999999888754 589999999995
Q ss_pred CCCcCcccccCCCCCCeeeccc-----------ccccccccCcceeecCccccccCCCCeeecCccccccccccccCccC
Q 039311 511 RLEGLPSKICKLKSLERLNLAE-----------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF 579 (909)
Q Consensus 511 ~l~~lp~~l~~L~~L~~L~l~~-----------~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 579 (909)
.. .+|. ++.+++|+.|++.. +++.|++++|.+..+|.. +++|+.|++++|....+ +.
T Consensus 227 l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l-----~~-- 294 (454)
T 1jl5_A 227 LE-ELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-----SE-- 294 (454)
T ss_dssp CS-SCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-----SC--
T ss_pred CC-cccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-----cC--
Confidence 54 7884 89999999999843 244445555555444432 24555555554221111 11
Q ss_pred CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCCCCCcCceecccC
Q 039311 580 GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCC 659 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C 659 (909)
..++|+.|++++|.+..++.. .++|+.|++++|+++.+|.. +++|+.|++++| .++.+|..+++|+.|++.++
T Consensus 295 ~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N 367 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYN 367 (454)
T ss_dssp CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCC
Confidence 124556666666555543321 13666666666666666543 466666666665 45566666666666666665
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=219.34 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=120.6
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
.++.++++++.++.+|..+. .+|++|++++|.+..++ ..+.++++|++|++++|.+....|. ++.+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 57778888888888877663 57888888888887775 4677888888888888876655554 777888888888876
Q ss_pred cccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCc--ccCcccc--CcceeeccccCccccC
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLM--SFPELSC--NIEELSLDGTAIQEFP 492 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~--~lp~~~~--~L~~L~L~~~~i~~lp 492 (909)
.. ..+|..+. ++|++|++++|. ++.++.. + ++++|+.|++++|.... ..+..+. +|+.|++++|.+..+|
T Consensus 113 ~l-~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HL-VEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp CC-CSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred cC-CccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 53 35666555 678888888754 4555543 3 57778888877765421 2222221 5666666667666666
Q ss_pred cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
..+. ++|+.|++++|......|..+..+++|+.|++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 6543 56666666666554444455555555555554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=215.53 Aligned_cols=257 Identities=16% Similarity=0.171 Sum_probs=152.6
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
++++++++++.++.+|..+. .+|++|++++|.++.++. .+.++++|++|++++|.+....|. +..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 57788888888888887664 578888888888888775 577888888888888876666554 778888888888876
Q ss_pred cccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCc--ccCc---cccCcceeeccccCcccc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLM--SFPE---LSCNIEELSLDGTAIQEF 491 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~--~lp~---~~~~L~~L~L~~~~i~~l 491 (909)
.. ..+|..+. ++|++|++++|. ++.++.. + ++++|+.|++++|.... ..+. ...+|++|++++|.+..+
T Consensus 111 ~l-~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 QL-KELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CC-SBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred cC-CccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 53 45665554 678888887754 4444432 2 47777777777764421 1111 123444555555555544
Q ss_pred CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccc
Q 039311 492 PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM 571 (909)
Q Consensus 492 p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 571 (909)
|..+. ++|+.|++++|......|..+ ..+++|+.|++++|. +.
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~--------------------------------~~l~~L~~L~Ls~n~---l~ 229 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASL--------------------------------KGLNNLAKLGLSFNS---IS 229 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGG--------------------------------TTCTTCCEEECCSSC---CC
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHh--------------------------------cCCCCCCEEECCCCc---Cc
Confidence 44332 445555555544333333344 444444444444421 11
Q ss_pred ccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhc-------cCCCCCEEeecCCC
Q 039311 572 GLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESII-------QLSHLFSLGISHCE 639 (909)
Q Consensus 572 ~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~-------~l~~L~~L~L~~c~ 639 (909)
+.....+..+++|+.|+|++|.+..+|.++..+++|+.|++++|+++.+|.... ..+.|+.|++++++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 111123444556666666666666666666666666666666666665553221 23556666666655
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=249.64 Aligned_cols=208 Identities=20% Similarity=0.268 Sum_probs=172.8
Q ss_pred CCccchHHHHHhhCC--CeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhhcCCCcEEEC---CCCCHHH
Q 039311 35 CPSIGLNFRSKRLSR--KKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEV---KELFDDD 109 (909)
Q Consensus 35 ~~~~~~~~i~~~L~~--kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~y~l---~~L~~~e 109 (909)
+.+.....+++.|.+ +++||||||||+..+++. +++|++||||||++.++..++ ...|++ ++|+.+|
T Consensus 219 ~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~e 290 (591)
T 1z6t_A 219 NIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEK 290 (591)
T ss_dssp SHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHH
T ss_pred CHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHH
Confidence 344566777777765 799999999999887764 368999999999999988764 445665 5899999
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHhcCCC-----------cchhh
Q 039311 110 ARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPH-----------VDIQK 178 (909)
Q Consensus 110 s~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~-----------~~i~~ 178 (909)
|++||...++.. .....+.+++|+++|+|+||||+.+|+.|+++. .+|+..++.+..... ..+..
T Consensus 291 a~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~ 366 (591)
T 1z6t_A 291 GLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDE 366 (591)
T ss_dssp HHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHH
T ss_pred HHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHH
Confidence 999999999752 233456789999999999999999999998764 479999999875432 35889
Q ss_pred hhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcccchhHhhhccccEEeC----CeEEehHHHHHHHH
Q 039311 179 VLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAEIGISVLVDKCLMVILN----NKIMMHDLLQEMGR 252 (909)
Q Consensus 179 ~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~~~i~~L~~~~li~~~~----~~~~mhdll~e~~~ 252 (909)
++..||+.||++.|.||+++|+||.++ +.+.+..+|.+.+..+..+++.|++++||+... ..+.||++++++++
T Consensus 367 ~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~ 446 (591)
T 1z6t_A 367 AMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT 446 (591)
T ss_dssp HHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHH
Confidence 999999999999999999999999876 778889999876555677899999999998762 26999999999988
Q ss_pred HH
Q 039311 253 EI 254 (909)
Q Consensus 253 ~i 254 (909)
+.
T Consensus 447 ~~ 448 (591)
T 1z6t_A 447 EK 448 (591)
T ss_dssp HH
T ss_pred hh
Confidence 76
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=222.09 Aligned_cols=245 Identities=18% Similarity=0.170 Sum_probs=138.2
Q ss_pred CeeEEEcCCCCcc---ccccccccCCCCCEEecCC-CcCCCcCCC-CCccccccccccccccccceecccccCCCcccEe
Q 039311 363 NLVSLEMPHSSIK---QLWKGVQRLVNLKHINLSH-SEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVL 437 (909)
Q Consensus 363 ~L~~L~L~~~~i~---~lp~~~~~L~~L~~L~Ls~-~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L 437 (909)
+++.|+++++.+. .+|..+.++++|++|++++ |.+...+|. ++.+++|++|++++|.....+|..++.+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 5666666666665 4667777777777777774 665556664 7777777777777776666677777777777777
Q ss_pred ccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC-CCCEEeccCCCCCCcC
Q 039311 438 NLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS-SLILLNLGNCLRLEGL 515 (909)
Q Consensus 438 ~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~c~~l~~l 515 (909)
++++|.....+|..+ .+++|++|++++|...+ .+|..++.++ +|+.|++++|...+.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------AIPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------ECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccC--------------------cCCHHHhhhhhcCcEEECcCCeeeccC
Confidence 777755333455444 35566666555543322 3344444444 5555555555444444
Q ss_pred cccccCCCCCCeeecccccccccccCccee-ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCC
Q 039311 516 PSKICKLKSLERLNLAEALKELKAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGI 594 (909)
Q Consensus 516 p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l 594 (909)
|..++.++ |+.|++ +++.+. ..|..+..+++|+.|++++|.. ...++.+..+++|++|+|++|.+
T Consensus 191 ~~~~~~l~-L~~L~L---------s~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 191 PPTFANLN-LAFVDL---------SRNMLEGDASVLFGSDKNTQKIHLAKNSL----AFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CGGGGGCC-CSEEEC---------CSSEEEECCGGGCCTTSCCSEEECCSSEE----CCBGGGCCCCTTCCEEECCSSCC
T ss_pred ChHHhCCc-ccEEEC---------cCCcccCcCCHHHhcCCCCCEEECCCCce----eeecCcccccCCCCEEECcCCcc
Confidence 44444443 444433 222222 2233344444444444444211 11222344456666666666666
Q ss_pred C-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCc
Q 039311 595 I-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 595 ~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~ 642 (909)
. .+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+.
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 6 46666666666666666666666 45543 556666666666665444
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=229.32 Aligned_cols=261 Identities=21% Similarity=0.226 Sum_probs=181.6
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
.++.|+++++.++.+|..+. .+|++|++++|.++.+|. .+++|++|+|++|.+ +.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQL-TSLPV--LPPGLLELSIFSNP- 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCC-SCCCC--CCTTCCEEEECSCC-
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcC-CcCCC--CCCCCCEEECcCCc-
Confidence 35666666777777776655 577777777777777666 456777777777763 34554 56777777777764
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
+..+|. .+++|+.|++++|. ++.+|.. +++|++|++++| .+..+|..+.+|+.|++++|.++.+| ..+++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~ 182 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSG 182 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCC
Confidence 334444 55677777777753 6666653 477888888876 44566777778888888888888887 45678
Q ss_pred CCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCC
Q 039311 501 LILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG 580 (909)
Q Consensus 501 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 580 (909)
|+.|++++|.. ..+|.. +++|+.|++ ++|.+..+|.. +++|+.|++++|... . ++ ..
T Consensus 183 L~~L~Ls~N~l-~~l~~~---~~~L~~L~L---------~~N~l~~l~~~---~~~L~~L~Ls~N~L~---~--lp--~~ 239 (622)
T 3g06_A 183 LQELSVSDNQL-ASLPTL---PSELYKLWA---------YNNRLTSLPAL---PSGLKELIVSGNRLT---S--LP--VL 239 (622)
T ss_dssp CCEEECCSSCC-SCCCCC---CTTCCEEEC---------CSSCCSSCCCC---CTTCCEEECCSSCCS---C--CC--CC
T ss_pred CcEEECCCCCC-CCCCCc---cchhhEEEC---------cCCcccccCCC---CCCCCEEEccCCccC---c--CC--CC
Confidence 88888888753 345542 355555554 55666666653 477888888874322 2 22 44
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
+++|+.|+|++|.+..+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|+.-...|
T Consensus 240 l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 6889999999998888877 6788999999999988888888889999999999887554443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=213.17 Aligned_cols=234 Identities=18% Similarity=0.244 Sum_probs=178.8
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccc-ccccccCCCC
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQL-WKGVQRLVNL 387 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L 387 (909)
..+++.+++.++.+...+ ..+ ++.|++|++++|.++.++. .+ .+.+|++|++++|.+..+ |..+..+++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp------~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVP------KDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EEETTEEECTTSCCCSCC------CSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred cCCCeEEEecCCCccccC------ccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 346788888765443222 111 4689999999999999987 34 789999999999999988 7789999999
Q ss_pred CEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCcc--ccCccc-cCCcCcEEEcc
Q 039311 388 KHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT--SLSTSI-HLGSLKKLILS 463 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~Ls 463 (909)
++|++++|.+. .+|. +. ++|++|++++|......+..++.+++|++|++++|.... ..+..+ ++++|+.|+++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 99999999855 4554 43 799999999988766666678999999999999975422 334444 59999999999
Q ss_pred CCCCCcccCc-cccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccC
Q 039311 464 GCSNLMSFPE-LSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEG 541 (909)
Q Consensus 464 ~c~~l~~lp~-~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~ 541 (909)
+|... .+|. ...+|++|++++|.+..+ |..+..+++|+.|++++|......+..+..+++|+.|++ ++
T Consensus 180 ~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L---------~~ 249 (330)
T 1xku_A 180 DTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL---------NN 249 (330)
T ss_dssp SSCCC-SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC---------CS
T ss_pred CCccc-cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC---------CC
Confidence 97644 4554 347899999999999977 577999999999999999766655556777777777776 44
Q ss_pred cceeecCccccccCCCCeeecCc
Q 039311 542 IAIREVPSSIACLKNLGRLSFES 564 (909)
Q Consensus 542 ~~~~~lp~~i~~l~~L~~L~l~~ 564 (909)
|.+..+|..+..+++|+.|++++
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCS
T ss_pred CcCccCChhhccCCCcCEEECCC
Confidence 55556666666556666665555
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-21 Score=211.37 Aligned_cols=234 Identities=19% Similarity=0.209 Sum_probs=180.4
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccc-ccccccCCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQL-WKGVQRLVNLK 388 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~ 388 (909)
.+++.+++.++.+...+ ..+ .+.|++|++++|.+..++. .+ .+.+|++|++++|.+..+ |..+..+++|+
T Consensus 33 c~l~~l~~~~~~l~~ip------~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVP------KEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCCSSCC------SCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred ccCCEEECCCCCccccC------CCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 46888888876543322 111 4689999999999999965 44 789999999999999988 67899999999
Q ss_pred EEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCc--cccCccccCCcCcEEEccCC
Q 039311 389 HINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSL--TSLSTSIHLGSLKKLILSGC 465 (909)
Q Consensus 389 ~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l--~~lp~~~~l~~L~~L~Ls~c 465 (909)
+|++++|.+. .+|. +. ++|++|++++|......+..++.+++|++|++++|..- ...+..+...+|+.|++++|
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n 182 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC
Confidence 9999999865 4554 44 89999999998766544456899999999999997542 13344443229999999997
Q ss_pred CCCcccCc-cccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcc
Q 039311 466 SNLMSFPE-LSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIA 543 (909)
Q Consensus 466 ~~l~~lp~-~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~ 543 (909)
... .+|. ...+|++|++++|.+..++ ..+..+++|+.|++++|......+..++.+++|+.|++ ++|.
T Consensus 183 ~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---------~~N~ 252 (332)
T 2ft3_A 183 KLT-GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL---------DNNK 252 (332)
T ss_dssp BCS-SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC---------CSSC
T ss_pred CCC-ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC---------CCCc
Confidence 644 4554 3468999999999999876 67999999999999999776666667888888888877 4556
Q ss_pred eeecCccccccCCCCeeecCcc
Q 039311 544 IREVPSSIACLKNLGRLSFESF 565 (909)
Q Consensus 544 ~~~lp~~i~~l~~L~~L~l~~~ 565 (909)
+..+|..+..+++|+.|++++|
T Consensus 253 l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 253 LSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCBCCTTGGGCTTCCEEECCSS
T ss_pred CeecChhhhcCccCCEEECCCC
Confidence 6677776666666666666653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=213.55 Aligned_cols=248 Identities=17% Similarity=0.168 Sum_probs=198.8
Q ss_pred CCCCEEecCCCcCCC--cCCC-CCcccccccccccc-ccccceecccccCCCcccEeccccccCccccCccc-cCCcCcE
Q 039311 385 VNLKHINLSHSEHLT--KIPD-LSLATNLESLNFQG-CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKK 459 (909)
Q Consensus 385 ~~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~-c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 459 (909)
.+++.|+|+++.+.+ .+|. +.++++|++|++++ |.....+|..++.+++|++|++++|.....+|..+ ++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888776 5664 88888888888885 66666778888888888888888866444666655 4666666
Q ss_pred EEccCCCCCcccCccccCcceeeccccCcc-ccCcccccCCCCCEEeccCCCCCCcCcccccCCC-CCCeeecccccccc
Q 039311 460 LILSGCSNLMSFPELSCNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLK-SLERLNLAEALKEL 537 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~-~L~~L~l~~~l~~L 537 (909)
|++++ |.+. .+|..++.+++|++|++++|...+.+|..++.++ +|+.|++
T Consensus 130 L~Ls~---------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L------- 181 (313)
T 1ogq_A 130 LDFSY---------------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI------- 181 (313)
T ss_dssp EECCS---------------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC-------
T ss_pred EeCCC---------------------CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEEC-------
Confidence 66665 5555 5788899999999999999988778999999998 8998887
Q ss_pred cccCccee-ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCC
Q 039311 538 KAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNN 616 (909)
Q Consensus 538 ~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~ 616 (909)
+++.+. .+|..+..++ |+.|++++| .+.+.....+..+++|+.|+|++|.+...+..+..+++|+.|+|++|+
T Consensus 182 --~~N~l~~~~~~~~~~l~-L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 182 --SRNRLTGKIPPTFANLN-LAFVDLSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp --CSSEEEEECCGGGGGCC-CSEEECCSS---EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred --cCCeeeccCChHHhCCc-ccEEECcCC---cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 455555 6788888887 999999984 333334445778999999999999999766678999999999999999
Q ss_pred Ce-ecchhhccCCCCCEEeecCCCCCcccCCC--CCCcCceecccCccccccc
Q 039311 617 FE-RIPESIIQLSHLFSLGISHCERLHSLPEL--PCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 617 l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~~C~~L~~l~ 666 (909)
++ .+|..+..+++|+.|+|++|+.-..+|.. .++|+.|++.+++.|...|
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 99 89999999999999999999766688874 4577888888888776543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=213.46 Aligned_cols=226 Identities=27% Similarity=0.338 Sum_probs=121.1
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEecccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
+++.|+++++.+..+|..+.++++|++|+|++|.+. .+|. ++.+++|++|++++|... .+|..++.+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 444555555555555555555555666666555544 3443 555555555555555433 5555566666666666666
Q ss_pred ccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccC
Q 039311 442 CRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICK 521 (909)
Q Consensus 442 c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~ 521 (909)
|..+..+|..+. ...+.+ . -..+.+|++|++++|.+..+|.+++.+++|+.|++++|... .+|.
T Consensus 160 n~~~~~~p~~~~-----~~~~~~-----~-~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~---- 223 (328)
T 4fcg_A 160 CPELTELPEPLA-----STDASG-----E-HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGP---- 223 (328)
T ss_dssp ETTCCCCCSCSE-----EEC-CC-----C-EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCG----
T ss_pred CCCccccChhHh-----hccchh-----h-hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCch----
Confidence 555555554321 000000 0 00112334444444555555555666666666666555332 2333
Q ss_pred CCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC-Ccccc
Q 039311 522 LKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPEC 600 (909)
Q Consensus 522 L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~ 600 (909)
.++.+++|+.|++++| +..+..+..+..+++|+.|+|++|++. .+|..
T Consensus 224 ----------------------------~l~~l~~L~~L~Ls~n---~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 224 ----------------------------AIHHLPKLEELDLRGC---TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp ----------------------------GGGGCTTCCEEECTTC---TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred ----------------------------hhccCCCCCEEECcCC---cchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 3444444444444441 112222333555667777777776655 46777
Q ss_pred cCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecC
Q 039311 601 LGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 601 l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~ 637 (909)
++.+++|+.|+|++|++. .+|..+..+++|+.+++..
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 777777777777776655 7777777777777777765
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=218.14 Aligned_cols=270 Identities=18% Similarity=0.148 Sum_probs=181.9
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 417 (909)
.....++.+++.++.+|..+. .+|++|++++|.++.++. .+.++++|++|++++|.+....|. +..+++|++|++++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 344567888889999998765 489999999999998886 688999999999999987766665 88999999999999
Q ss_pred ccccceecccccCCCcccEeccccccCccccCc--cc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLST--SI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS 494 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~ 494 (909)
|......+..++.+++|++|++++| .++.+|. .+ ++++|++|++++|..+..++ |..
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------~~~ 169 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------------------RKD 169 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------------TTT
T ss_pred CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccC-------------------HHH
Confidence 8655433334888999999999986 4667766 33 58888888888875544432 223
Q ss_pred cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCcc-ccccCCCCeeecCcccccccccc
Q 039311 495 IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSS-IACLKNLGRLSFESFMCHEQMGL 573 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~ 573 (909)
++.+++|+.|++++|......|..++.+++|+.|++. ++.+..+|.. +..+++|+.|++++|........
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~---------~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH---------MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE---------CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC---------CCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 4444445555555544444444444444444444442 2223333332 22355566666655322222111
Q ss_pred ccCccCCCCCCCEEecCCCCCC-----CcccccCCCCCCcEEECCCCCCeecchhh-ccCCCCCEEeecCCC
Q 039311 574 LLPISFGLTSLTYLRLTDCGII-----ELPECLGQLSSRSILLLEKNNFERIPESI-IQLSHLFSLGISHCE 639 (909)
Q Consensus 574 ~~~~~~~l~~L~~L~Ls~~~l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~ 639 (909)
.++.......++.++++++.+. .+|..+..+++|+.|++++|+++.+|..+ ..+++|+.|+|++|+
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 1222233567778888887776 36778888999999999999999888875 788899999998885
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=212.37 Aligned_cols=223 Identities=23% Similarity=0.356 Sum_probs=165.2
Q ss_pred CCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCC-CCCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-DLSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 417 (909)
..++.|+++++.++.+|..+ .+.+|++|++++|.+..+|..++.+++|++|+|++|.+. .+| .++.+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 56777888888888888766 678888888888888888888888889999999888766 555 488888899999988
Q ss_pred ccccceecccccC---------CCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccC
Q 039311 418 CTCLLETHSSIQY---------LNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTA 487 (909)
Q Consensus 418 c~~l~~~p~~i~~---------L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~ 487 (909)
|.....+|..++. +++|++|++++|. ++.+|..+ ++++|++|+ +++|.
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~---------------------L~~N~ 217 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLK---------------------IRNSP 217 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEE---------------------EESSC
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEE---------------------ccCCC
Confidence 8888888877654 6777777777653 44555444 355555554 44566
Q ss_pred ccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccc
Q 039311 488 IQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMC 567 (909)
Q Consensus 488 i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~ 567 (909)
+..+|..++.+++|+.|++++|...+.+|..++.+++|+.|++..| ...+.+|.
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n--------~~~~~~p~------------------ 271 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC--------SNLLTLPL------------------ 271 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC--------TTCCBCCT------------------
T ss_pred CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC--------Cchhhcch------------------
Confidence 6778888999999999999999888888888888887777777432 11222333
Q ss_pred ccccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCeec
Q 039311 568 HEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFERI 620 (909)
Q Consensus 568 ~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~~l 620 (909)
.+..+++|+.|+|++|++. .+|.+++.+++|+.+.+..+.+..+
T Consensus 272 ---------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 272 ---------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp ---------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred ---------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 3445677777777777766 5888889999999998887655443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-20 Score=217.97 Aligned_cols=265 Identities=23% Similarity=0.227 Sum_probs=183.1
Q ss_pred CCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEec
Q 039311 313 KLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINL 392 (909)
Q Consensus 313 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L 392 (909)
+++.|++.++.+...+. .+ +++|++|++++|.++.+|. .+.+|++|+|++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~------~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD------CL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCS------CC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccCh------hh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 35666666554432221 11 2567777777777777777 45677778887777777776 5677777888
Q ss_pred CCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC
Q 039311 393 SHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP 472 (909)
Q Consensus 393 s~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp 472 (909)
++|.+.. +|. .+++|++|++++|. +..+|.. +++|++|++++| .++.+|. .+.+|+.|++++|. +..+|
T Consensus 109 s~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N~-l~~l~ 177 (622)
T 3g06_A 109 FSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYNNQ-LTSLP 177 (622)
T ss_dssp CSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCC
T ss_pred cCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCCCC-CCCCc
Confidence 7776433 444 56777777777765 3445543 377788888875 4555554 35678888887754 44567
Q ss_pred ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCcccc
Q 039311 473 ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIA 552 (909)
Q Consensus 473 ~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~ 552 (909)
..+.+|+.|++++|.+..+|.. +++|+.|++++|.. ..+|.. +++|+.|++ ++|.+..+| .
T Consensus 178 ~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l-~~l~~~---~~~L~~L~L---------s~N~L~~lp---~ 238 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIV---------SGNRLTSLP---V 238 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSCCCC---CTTCCEEEC---------CSSCCSCCC---C
T ss_pred ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcc-cccCCC---CCCCCEEEc---------cCCccCcCC---C
Confidence 6677788888888888877764 46788888888743 345542 355666655 556666676 4
Q ss_pred ccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe-ecchhhcc
Q 039311 553 CLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE-RIPESIIQ 626 (909)
Q Consensus 553 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~ 626 (909)
.+++|+.|++++|.... +|. .+++|+.|+|++|.+..+|..+.++++|+.|+|++|.++ ..|..+..
T Consensus 239 ~l~~L~~L~Ls~N~L~~-----lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS-----LPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCTTCCEEECCSSCCSC-----CCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCc-----CCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 56788899998843322 222 578999999999999999999999999999999999998 45554443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-22 Score=215.10 Aligned_cols=259 Identities=17% Similarity=0.093 Sum_probs=156.6
Q ss_pred CeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
.++.++++.+.+...+.. +..+++|++|++++|.+....|. +..+++|++|++++|......+ ++.+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455666777777655543 34566888888888876655543 7788888888888876544333 7888888888888
Q ss_pred cccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcccc
Q 039311 441 HCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 441 ~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+|. ++.++. .++|+.|++++|......+..+.+|++|++++|.+..++. .++.+++|+.|++++|......|..+
T Consensus 89 ~n~-l~~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 89 NNY-VQELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp SSE-EEEEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred CCc-cccccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 864 555442 4778888888776555445555667777777777776643 56677777777777775544444433
Q ss_pred -cCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcc
Q 039311 520 -CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP 598 (909)
Q Consensus 520 -~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 598 (909)
..+++|+.|++ ++|.+..++. ...+++|+.|+|++|.+..+|
T Consensus 165 ~~~l~~L~~L~L---------~~N~l~~~~~----------------------------~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 165 AASSDTLEHLNL---------QYNFIYDVKG----------------------------QVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp GGGTTTCCEEEC---------TTSCCCEEEC----------------------------CCCCTTCCEEECCSSCCCEEC
T ss_pred hhccCcCCEEEC---------CCCcCccccc----------------------------ccccccCCEEECCCCcCCcch
Confidence 24555555554 2233333322 223555666666666666555
Q ss_pred cccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCC-cccCC---CCCCcCceecccCccccc
Q 039311 599 ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERL-HSLPE---LPCDLSDIEAHCCSSLEA 664 (909)
Q Consensus 599 ~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L-~~lp~---l~~sL~~L~i~~C~~L~~ 664 (909)
..+..+++|+.|+|++|+++.+|..+..+++|+.|++++|+.. ..+|. -.++|+.|++.+|..++.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 5556666666666666666666665666666666666665433 23332 122444455554444443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=221.00 Aligned_cols=346 Identities=20% Similarity=0.182 Sum_probs=208.2
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCC-C-CCCCeeEEEcCCCCccccccc-cccCCCC
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSK-I-PPENLVSLEMPHSSIKQLWKG-VQRLVNL 387 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~lp~~-~~~L~~L 387 (909)
.+++.|++++|.+.... +..+. +++|++|++++|.++.+|.. | .+.+|++|+|++|+++.+|.+ +.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~-----~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCC-----HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 36788888877654321 23344 77888888888888888754 4 678888888888888888754 6788888
Q ss_pred CEEecCCCcCCCcCCC-CCccccccccccccccccc-eecccccCCCcccEeccccccCccccC-ccc-cCCc----CcE
Q 039311 388 KHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLL-ETHSSIQYLNKLVVLNLKHCRSLTSLS-TSI-HLGS----LKK 459 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~-~~p~~i~~L~~L~~L~L~~c~~l~~lp-~~~-~l~~----L~~ 459 (909)
++|+|++|.+....+. ++++++|++|++++|.... ..|..++.+++|++|++++|. ++.++ ..+ .+.+ +..
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhh
Confidence 8888888876554443 7888888888888876543 456777888888888888864 44433 332 2322 335
Q ss_pred EEccCCCCCcccCcccc--CcceeeccccCcc--ccCcccccC-------------------------------------
Q 039311 460 LILSGCSNLMSFPELSC--NIEELSLDGTAIQ--EFPSSIERL------------------------------------- 498 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~~~--~L~~L~L~~~~i~--~lp~~i~~l------------------------------------- 498 (909)
++++.+.....-+.... .+..+.+.++... ..+..+..+
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 66666443222222222 2345556555322 111111111
Q ss_pred ------------------------------------------CCCCEEeccCCCCCCcCc-------------------c
Q 039311 499 ------------------------------------------SSLILLNLGNCLRLEGLP-------------------S 517 (909)
Q Consensus 499 ------------------------------------------~~L~~L~L~~c~~l~~lp-------------------~ 517 (909)
.+|+.|++.+|......+ .
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 233344444332211100 0
Q ss_pred cccCCCCCCeeeccc-----------------ccccccccCcceeecCccccccCCCCeeecCcccccc-----------
Q 039311 518 KICKLKSLERLNLAE-----------------ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE----------- 569 (909)
Q Consensus 518 ~l~~L~~L~~L~l~~-----------------~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~----------- 569 (909)
....+++|+.|++.. +++.+++..+....++..+..+++|+.+++.++....
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 112345555555522 2333444444444445555556666666655422111
Q ss_pred -----------ccccccCccCCCCCCCEEecCCCCCCC--cccccCCCCCCcEEECCCCCCeec-chhhccCCCCCEEee
Q 039311 570 -----------QMGLLLPISFGLTSLTYLRLTDCGIIE--LPECLGQLSSRSILLLEKNNFERI-PESIIQLSHLFSLGI 635 (909)
Q Consensus 570 -----------~~~~~~~~~~~l~~L~~L~Ls~~~l~~--lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L 635 (909)
+.......+..+++|+.|++++|.... .|..+..+++|+.|+|++|+++.+ |..+..+++|+.|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 111111224456788888888887553 567788899999999999999866 567889999999999
Q ss_pred cCCCCCcccCC----CCCCcCceecccCcccccc
Q 039311 636 SHCERLHSLPE----LPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 636 ~~c~~L~~lp~----l~~sL~~L~i~~C~~L~~l 665 (909)
++| +++.++. ..++|+.|+++++. |+.+
T Consensus 526 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~ 557 (635)
T 4g8a_A 526 SHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTS 557 (635)
T ss_dssp TTS-CCCBCCCGGGTTCTTCCEEECTTSC-CCBC
T ss_pred CCC-cCCCCChhHHhCCCCCCEEECCCCc-CCCC
Confidence 987 5666654 24578888888863 4444
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=195.77 Aligned_cols=238 Identities=21% Similarity=0.253 Sum_probs=116.6
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcC---CCCCccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKI---PDLSLATNLESLNFQGC 418 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~c 418 (909)
+.++++++.++.+|..+. .+|++|++++|.++.+|.. +.++++|++|++++|.+.... +.+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 356667777777776554 4677777777777777654 466777777777766543210 11333444444444444
Q ss_pred cccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccC--cccc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP--SSIE 496 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp--~~i~ 496 (909)
.. ..+|..+..+++|++|++++| .+..++ ..+.
T Consensus 89 ~i-~~l~~~~~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~~ 123 (306)
T 2z66_A 89 GV-ITMSSNFLGLEQLEHLDFQHS--------------------------------------------NLKQMSEFSVFL 123 (306)
T ss_dssp SE-EEEEEEEETCTTCCEEECTTS--------------------------------------------EEESSTTTTTTT
T ss_pred cc-ccChhhcCCCCCCCEEECCCC--------------------------------------------cccccccchhhh
Confidence 32 233333444444444444442 222222 1344
Q ss_pred cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee--cCccccccCCCCeeecCccccccccccc
Q 039311 497 RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE--VPSSIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 497 ~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
.+++|++|++++|......|..+..+++|+.|++. ++.+.. +|..+..+++|+.|++++| .+....
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---------~n~l~~~~~~~~~~~l~~L~~L~Ls~n---~l~~~~ 191 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA---------GNSFQENFLPDIFTELRNLTFLDLSQC---QLEQLS 191 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT---------TCEEGGGEECSCCTTCTTCCEEECTTS---CCCEEC
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECC---------CCccccccchhHHhhCcCCCEEECCCC---CcCCcC
Confidence 45555555555554443444444445555544442 222221 3444444444444444442 111111
Q ss_pred cCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCee-cchhhccCC-CCCEEeecCC
Q 039311 575 LPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFER-IPESIIQLS-HLFSLGISHC 638 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~i~~l~-~L~~L~L~~c 638 (909)
...+..+++|+.|++++|.+..++. .+..+++|+.|+|++|++.. .|..+..++ +|+.|+|++|
T Consensus 192 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 2234445555555555555554332 44555555555555555552 333444442 5555555554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-19 Score=203.99 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=117.0
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
..+.++..+..++.+|..+. .+|++|+|++|++..++ ..+.++++|++|+|++|.+....|. +.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34567778888888887765 68899999999988874 6688899999999999887666654 888999999999988
Q ss_pred cccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCcc----ccCcceeeccccCccccC
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPEL----SCNIEELSLDGTAIQEFP 492 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~----~~~L~~L~L~~~~i~~lp 492 (909)
......+..++.+++|++|++++|. ++.+|... ++++|+.|++++|..++.++.. +.+|++|++++|.+..+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 7554444558889999999999865 56666533 5888999988887777665531 233444444444444443
Q ss_pred cccccCCCCCEEeccCCC
Q 039311 493 SSIERLSSLILLNLGNCL 510 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~ 510 (909)
.+..+++|+.|+|++|.
T Consensus 213 -~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp -CCTTCTTCCEEECTTSC
T ss_pred -cccccccccEEECcCCc
Confidence 23444444444444443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-19 Score=202.47 Aligned_cols=241 Identities=22% Similarity=0.268 Sum_probs=129.6
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
.+.++..+..++.+|..+. .+++.|+|++|.+..++ ..+.++++|++|+|++|.+....+. +.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4556666666777776554 46667777777666665 4566666666666666654433332 5555566666665554
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
.....+..+..+++|++|++++|. ++.++.. .+..++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~------------------------------------------~~~~l~ 160 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNP-IESIPSY------------------------------------------AFNRIP 160 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCC-CCEECTT------------------------------------------TTTTCT
T ss_pred CCeeCHhHhhccccCceeeCCCCc-ccccCHH------------------------------------------HhhhCc
Confidence 332222345555555555555533 3333321 233444
Q ss_pred CCCEEeccCCCCCCcCcc-cccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCcc
Q 039311 500 SLILLNLGNCLRLEGLPS-KICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
+|+.|++++|..+..++. .+..+++|+.|++ ++|.+..+|. +..+++|+.|++++| .+.......+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L---------~~n~l~~~~~-~~~l~~L~~L~Ls~N---~l~~~~~~~~ 227 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNL---------AMCNLREIPN-LTPLIKLDELDLSGN---HLSAIRPGSF 227 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEEC---------TTSCCSSCCC-CTTCSSCCEEECTTS---CCCEECTTTT
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecC---------CCCcCccccc-cCCCcccCEEECCCC---ccCccChhhh
Confidence 444444444433333332 2344444444443 2223333332 444555555555552 2222223345
Q ss_pred CCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 579 FGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
.++++|+.|+|++|.+..+ +..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 5566777777777776653 44566777777777777777766643 4567777777777664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-19 Score=202.28 Aligned_cols=223 Identities=20% Similarity=0.229 Sum_probs=166.1
Q ss_pred CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLN 414 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 414 (909)
+..+++|++++|.++.++. .+ .+.+|++|+|++|.+..++ ..+..+++|++|+|++|.+....+. +..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4789999999999999874 44 7899999999999999887 5688999999999999987655554 89999999999
Q ss_pred cccccccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccC
Q 039311 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP 492 (909)
Q Consensus 415 L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp 492 (909)
+++|......+..+..+++|++|++++|..+..++... ++++|+.|++++| .++.+|
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n---------------------~l~~~~ 201 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---------------------NLREIP 201 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS---------------------CCSSCC
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC---------------------cCcccc
Confidence 99987665455578999999999999988888777633 4666666666664 344444
Q ss_pred cccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccc
Q 039311 493 SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 493 ~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 572 (909)
.+..+++|+.|+|++|......|..+..+++|+.|++. ++.+..
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~---------~n~l~~-------------------------- 245 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI---------QSQIQV-------------------------- 245 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT---------TCCCCE--------------------------
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC---------CCceeE--------------------------
Confidence 35667777777777775554445555555555555542 222222
Q ss_pred cccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCe
Q 039311 573 LLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 573 ~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 618 (909)
.....+..+++|+.|+|++|.+..+|. .+..+++|+.|+|++|.+.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 122335567788888888888887654 4577889999999988765
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-19 Score=203.19 Aligned_cols=240 Identities=23% Similarity=0.289 Sum_probs=161.5
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEecccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
....++.++..++.+|.++. ++|++|+|++|.+....|+ +.++++|++|+|++|......+..+..+++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888889999998764 6899999999987776665 88899999999999876665667788888888888888
Q ss_pred ccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcc-
Q 039311 442 CRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPS- 517 (909)
Q Consensus 442 c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~- 517 (909)
|. ++.+|.. + ++++|++|++++ |.+..+|. .+.++++|+.|++++|..++.++.
T Consensus 133 n~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 133 NW-LTVIPSGAFEYLSKLRELWLRN---------------------NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp SC-CSBCCTTTSSSCTTCCEEECCS---------------------CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred Cc-CCccChhhhcccCCCCEEECCC---------------------CCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 64 5555543 2 366666666655 45555554 467888888888888777777665
Q ss_pred cccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc
Q 039311 518 KICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL 597 (909)
Q Consensus 518 ~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l 597 (909)
.+..+++|+.|++ ++|.+..+|. +..+++|+.|++++|. +.......+.++++|+.|+|++|.+..+
T Consensus 191 ~~~~l~~L~~L~L---------~~n~l~~~~~-~~~l~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 191 AFEGLFNLKYLNL---------GMCNIKDMPN-LTPLVGLEELEMSGNH---FPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp TTTTCTTCCEEEC---------TTSCCSSCCC-CTTCTTCCEEECTTSC---CSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred hccCCCCCCEEEC---------CCCccccccc-ccccccccEEECcCCc---CcccCcccccCccCCCEEEeCCCcCceE
Confidence 3667777777766 3444455543 5566666666666532 2222233355566666666666666643
Q ss_pred -ccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 598 -PECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 598 -p~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 44556666666666666666655543 3556666666666653
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-20 Score=198.83 Aligned_cols=224 Identities=23% Similarity=0.273 Sum_probs=157.2
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccc---ccccccCCCCCEEecCCCcCCCcCCCCCcccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQL---WKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESL 413 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l---p~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 413 (909)
+.+|++|++++|.++.+|..+ .+.+|++|++++|.+..+ +..+..+++|++|++++|.+....+.+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 468999999999999999864 789999999999999866 567778999999999999866544458899999999
Q ss_pred ccccccccceec-ccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccc-
Q 039311 414 NFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQE- 490 (909)
Q Consensus 414 ~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~- 490 (909)
++++|......+ ..+..+++|++|++++|......+..+ ++++|++|++++ |.+..
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~ 165 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG---------------------NSFQEN 165 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT---------------------CEEGGG
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC---------------------Cccccc
Confidence 999986544333 467788888888888865333333333 355555555555 44432
Q ss_pred -cCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccc
Q 039311 491 -FPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE 569 (909)
Q Consensus 491 -lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 569 (909)
+|..+..+++|+.|++++|......|..+..+++|+.|++. +|.+..++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~---------~N~l~~~~--------------------- 215 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS---------HNNFFSLD--------------------- 215 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT---------TSCCSBCC---------------------
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC---------CCccCccC---------------------
Confidence 56666777777777777775544445555555555555542 22222221
Q ss_pred ccccccCccCCCCCCCEEecCCCCCCC-cccccCCCC-CCcEEECCCCCCe
Q 039311 570 QMGLLLPISFGLTSLTYLRLTDCGIIE-LPECLGQLS-SRSILLLEKNNFE 618 (909)
Q Consensus 570 ~~~~~~~~~~~l~~L~~L~Ls~~~l~~-lp~~l~~l~-~L~~L~L~~n~l~ 618 (909)
...+..+++|+.|+|++|.+.. .|..+..++ +|+.|+|++|.+.
T Consensus 216 -----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 216 -----TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp -----SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred -----hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 1124456778888888888775 456677774 8888888888876
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-19 Score=190.20 Aligned_cols=220 Identities=21% Similarity=0.193 Sum_probs=108.8
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++.+++.++.+|..+ +.+|++|+++++.+..++. .+..+++|++|++++|.+....|. +..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666666676666554 3466677777766666653 456666666666666654444332 55555555555555542
Q ss_pred ccee-cccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 421 LLET-HSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 421 l~~~-p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
+..+ |..+..+++|++|++++|. +..++ |..+..++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~------------------------------------------~~~~~~l~ 129 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCG-LQELG------------------------------------------PGLFRGLA 129 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSC-CCCCC------------------------------------------TTTTTTCT
T ss_pred ccccCHHHhcCCcCCCEEECCCCc-CCEEC------------------------------------------HhHhhCCc
Confidence 2222 3344444444444444432 11111 22233444
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCccccccccccccCcc
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
+|++|++++|......+..++.+++|+.|++ +++.+..+|. .+..+++|+.|++++|. +.+.....+
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l---------~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~ 197 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFL---------HGNRISSVPERAFRGLHSLDRLLLHQNR---VAHVHPHAF 197 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC---------CSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTT
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEEC---------CCCcccccCHHHhcCccccCEEECCCCc---ccccCHhHc
Confidence 4444444444332222222344444444443 2223333332 24444444455544421 222222334
Q ss_pred CCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCe
Q 039311 579 FGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 618 (909)
..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 456666666666666665543 3666666666666666655
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-21 Score=226.77 Aligned_cols=221 Identities=16% Similarity=0.179 Sum_probs=102.3
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccC-CCC--CCC----CeeEEEcCCCCcc----
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLS-SKI--PPE----NLVSLEMPHSSIK---- 375 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp-~~~--~~~----~L~~L~L~~~~i~---- 375 (909)
|..+++|+.|++.+|.+.+... ..+...+. .++|++|++++|.+.... ..+ .+. +|++|++++|.+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARC-KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHH-HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHH-HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 5566666666666554332100 00111111 355666666666553311 011 122 4666666666655
Q ss_pred -ccccccccCCCCCEEecCCCcCCCcCCC------CCccccccccccccccccce----ecccccCCCcccEeccccccC
Q 039311 376 -QLWKGVQRLVNLKHINLSHSEHLTKIPD------LSLATNLESLNFQGCTCLLE----THSSIQYLNKLVVLNLKHCRS 444 (909)
Q Consensus 376 -~lp~~~~~L~~L~~L~Ls~~~~l~~~p~------l~~l~~L~~L~L~~c~~l~~----~p~~i~~L~~L~~L~L~~c~~ 444 (909)
.++..+..+++|++|++++|.+....+. ....++|++|++++|..... ++..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 181 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND- 181 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-
Confidence 3455566666666666666653322111 11234566666666644332 23444555666666666654
Q ss_pred ccccC-ccc------cCCcCcEEEccCCCCCcc----cCc---cccCcceeeccccCcccc------CcccccCCCCCEE
Q 039311 445 LTSLS-TSI------HLGSLKKLILSGCSNLMS----FPE---LSCNIEELSLDGTAIQEF------PSSIERLSSLILL 504 (909)
Q Consensus 445 l~~lp-~~~------~l~~L~~L~Ls~c~~l~~----lp~---~~~~L~~L~L~~~~i~~l------p~~i~~l~~L~~L 504 (909)
+.... ..+ ..++|+.|++++|..... ++. ...+|++|++++|.+... +..+..+++|++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 22211 111 134666666666543221 222 124455555555554421 1112235555555
Q ss_pred eccCCCCCCc----CcccccCCCCCCeeec
Q 039311 505 NLGNCLRLEG----LPSKICKLKSLERLNL 530 (909)
Q Consensus 505 ~L~~c~~l~~----lp~~l~~L~~L~~L~l 530 (909)
++++|..... ++..+..+++|+.|++
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 5555533221 3444444555555554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-21 Score=224.99 Aligned_cols=340 Identities=16% Similarity=0.170 Sum_probs=233.6
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC-----ccCCCC-CCCCeeEEEcCCCCcccc-ccc-cc
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK-----SLSSKI-PPENLVSLEMPHSSIKQL-WKG-VQ 382 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~i~~l-p~~-~~ 382 (909)
++|+.|++.++.+.+.. ....+. +++|++|++++|.+. .++..+ .+++|++|++++|.+... +.. ..
T Consensus 3 ~~l~~L~Ls~~~l~~~~----~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR----WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHH----HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchh----HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 45788888877654321 111122 678999999999987 445555 678999999999998752 222 22
Q ss_pred cCC----CCCEEecCCCcCCC----cCCC-CCccccccccccccccccceeccccc-----CCCcccEeccccccCcc--
Q 039311 383 RLV----NLKHINLSHSEHLT----KIPD-LSLATNLESLNFQGCTCLLETHSSIQ-----YLNKLVVLNLKHCRSLT-- 446 (909)
Q Consensus 383 ~L~----~L~~L~Ls~~~~l~----~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~-----~L~~L~~L~L~~c~~l~-- 446 (909)
.++ +|++|++++|.+.. .++. +..+++|++|++++|......+..+. ..++|++|++++|..-.
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 344 79999999998663 3344 88999999999999886544343332 35689999999985322
Q ss_pred --ccCccc-cCCcCcEEEccCCCCCcc----cCc----cccCcceeeccccCccc-----cCcccccCCCCCEEeccCCC
Q 039311 447 --SLSTSI-HLGSLKKLILSGCSNLMS----FPE----LSCNIEELSLDGTAIQE-----FPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 447 --~lp~~~-~l~~L~~L~Ls~c~~l~~----lp~----~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~ 510 (909)
.++..+ .+++|+.|++++|..... +.. ...+|++|++++|.+.. ++..+..+++|+.|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 123333 479999999999874332 112 23489999999999985 67888899999999999996
Q ss_pred CCCc----C-cccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCc--cCCCCC
Q 039311 511 RLEG----L-PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPI--SFGLTS 583 (909)
Q Consensus 511 ~l~~----l-p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~ 583 (909)
.... + +.....+++|+.|++..| .+.......++..+..+++|+.|++++|.........+.. ....++
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n----~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWEC----GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTS----CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCC----CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 4332 1 222346888998888543 1111122236777888999999999984322111001111 122469
Q ss_pred CCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCeec-chhhc----c-CCCCCEEeecCCCCCc-----ccCCC
Q 039311 584 LTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFERI-PESII----Q-LSHLFSLGISHCERLH-----SLPEL 647 (909)
Q Consensus 584 L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l-p~~i~----~-l~~L~~L~L~~c~~L~-----~lp~l 647 (909)
|+.|++++|.+.. ++..+..+++|+.|+|++|.+... +..+. . .++|+.|+|++|. ++ .+|..
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~ 393 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAAT 393 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHH
Confidence 9999999999884 567778889999999999988743 23332 2 6799999999985 44 45542
Q ss_pred ---CCCcCceecccCc
Q 039311 648 ---PCDLSDIEAHCCS 660 (909)
Q Consensus 648 ---~~sL~~L~i~~C~ 660 (909)
.++|++|++++|+
T Consensus 394 l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 394 LLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCCCCCEEECCSSS
T ss_pred HHhCCCccEEECCCCC
Confidence 4689999999884
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=193.48 Aligned_cols=170 Identities=22% Similarity=0.282 Sum_probs=134.5
Q ss_pred CCCccEEEeeCCCCCccCCC-C-CCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcC-CC-CCcccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSK-I-PPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKI-PD-LSLATNLESL 413 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~-p~-l~~l~~L~~L 413 (909)
+.+|++|+++++.++.+|.. + .+.+|++|++++|.+..+ |..+..+++|++|++++|..++.+ |. +..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 57899999999999999864 4 789999999999999988 678999999999999999745554 44 8899999999
Q ss_pred ccccccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcccc
Q 039311 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEF 491 (909)
Q Consensus 414 ~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~l 491 (909)
++++|......+..++.+++|++|++++|. ++.++.. + .+++|+.|++++ |.++.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~ 168 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHG---------------------NRISSV 168 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS---------------------SCCCEE
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCC---------------------Cccccc
Confidence 999998777667888999999999999864 4555442 2 355565555555 555555
Q ss_pred Cc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 492 PS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 492 p~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
|. .+..+++|+.|++++|......|..+..+++|+.|++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 54 4778888999999888766666777777777777766
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-20 Score=212.10 Aligned_cols=231 Identities=17% Similarity=0.116 Sum_probs=131.1
Q ss_pred CCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 386 NLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+|++|+|++|.+....|. ++.+++|++|+|++|......| ++.+++|++|++++|. ++.+|. .++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCCcCEEECcC
Confidence 566666666655544442 5666666666666655443333 6666667777776653 444443 26677777777
Q ss_pred CCCCcccCccccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCcCccccc-CCCCCCeeecccccccccccCc
Q 039311 465 CSNLMSFPELSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEGLPSKIC-KLKSLERLNLAEALKELKAEGI 542 (909)
Q Consensus 465 c~~l~~lp~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~lp~~l~-~L~~L~~L~l~~~l~~L~l~~~ 542 (909)
|......+..+.+|+.|++++|.+..+ |..++.+++|+.|+|++|...+..|..+. .+++|+.|++ ++|
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L---------s~N 179 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL---------QYN 179 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC---------TTS
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec---------CCC
Confidence 655554444556677777777777755 44677778888888888766665565554 5666666665 333
Q ss_pred ceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe--ec
Q 039311 543 AIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE--RI 620 (909)
Q Consensus 543 ~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~l 620 (909)
.+..+|. ...+++|+.|++++|... ..++.+..+++|+.|+|++|.+..+|..+..+++|+.|++++|.+. .+
T Consensus 180 ~l~~~~~-~~~l~~L~~L~Ls~N~l~----~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 180 FIYDVKG-QVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCEEEC-CCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccccc-cccCCCCCEEECCCCCCC----CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 4444433 223555555555542221 1222344455555555555555555555555555555555555555 44
Q ss_pred chhhccCCCCCEEeec
Q 039311 621 PESIIQLSHLFSLGIS 636 (909)
Q Consensus 621 p~~i~~l~~L~~L~L~ 636 (909)
|..+..++.|+.|++.
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 4455555555555443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-20 Score=201.68 Aligned_cols=235 Identities=15% Similarity=0.068 Sum_probs=159.2
Q ss_pred CCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 386 NLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
.++.++++.+.+...++. +..+++|++|++++|......|..++.+++|++|++++|. +...+....+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcC
Confidence 355566666654333333 4567789999999987766666788899999999999865 44444444688888888887
Q ss_pred CCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcce
Q 039311 465 CSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAI 544 (909)
Q Consensus 465 c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~ 544 (909)
|. +..++. ..+|+.|++++|.+..++.. .+++|+.|++++|......|.
T Consensus 90 n~-l~~l~~-~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~--------------------------- 138 (317)
T 3o53_A 90 NY-VQELLV-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDL--------------------------- 138 (317)
T ss_dssp SE-EEEEEE-CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGB---------------------------
T ss_pred Cc-cccccC-CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccch---------------------------
Confidence 64 233332 14556666666665555432 244555555555543332222
Q ss_pred eecCccccccCCCCeeecCccccccccccccCcc-CCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchh
Q 039311 545 REVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS-FGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES 623 (909)
Q Consensus 545 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 623 (909)
.+..+++|+.|++++|. +.......+ ..+++|+.|++++|.+..++.. ..+++|+.|+|++|+++.+|..
T Consensus 139 -----~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 139 -----DEGCRSRVQYLDLKLNE---IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp -----CTGGGSSEEEEECTTSC---CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG
T ss_pred -----hhhccCCCCEEECCCCC---CCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh
Confidence 34555666666666532 222222333 2578999999999999987544 4599999999999999999989
Q ss_pred hccCCCCCEEeecCCCCCcccCCC---CCCcCceecccCccc
Q 039311 624 IIQLSHLFSLGISHCERLHSLPEL---PCDLSDIEAHCCSSL 662 (909)
Q Consensus 624 i~~l~~L~~L~L~~c~~L~~lp~l---~~sL~~L~i~~C~~L 662 (909)
+..+++|+.|++++| .++.+|.. .++|+.|++.+++--
T Consensus 210 ~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 210 FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 999999999999997 57788863 458899999887544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=196.70 Aligned_cols=261 Identities=22% Similarity=0.220 Sum_probs=194.6
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCC-CCCccccccccccccccccceecccccCCCcccEeccc
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-DLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
......+.+++.++.+|.++. ++|++|++++|.+....+ .+.++++|++|++++|......+..++.+++|++|+++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 334458899999999998765 589999999998766555 38899999999999987665556778889999999998
Q ss_pred cccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc--ccccCCCCCEEeccCCCCCCcC-
Q 039311 441 HCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS--SIERLSSLILLNLGNCLRLEGL- 515 (909)
Q Consensus 441 ~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~l- 515 (909)
+|. ++.+|.. + ++++|++|++++ |.+..+|. .+..+++|++|++++|.....+
T Consensus 109 ~n~-l~~~~~~~~~~l~~L~~L~L~~---------------------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 109 YNY-LSNLSSSWFKPLSSLTFLNLLG---------------------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp SSC-CSSCCHHHHTTCTTCSEEECTT---------------------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCc-CCcCCHhHhCCCccCCEEECCC---------------------CCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 864 5566554 2 466666666655 55566665 6889999999999999656555
Q ss_pred cccccCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCccccccccccccCc-cCCCCCCCEEecCCCC
Q 039311 516 PSKICKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCG 593 (909)
Q Consensus 516 p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~ 593 (909)
|..++.+++|+.|++. ++.+..+ |..+..+++|+.|++++|... . .... +..+++|+.|++++|.
T Consensus 167 ~~~~~~l~~L~~L~l~---------~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~-~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 167 RKDFAGLTFLEELEID---------ASDLQSYEPKSLKSIQNVSHLILHMKQHI---L-LLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp TTTTTTCCEEEEEEEE---------ETTCCEECTTTTTTCSEEEEEEEECSCST---T-HHHHHHHHTTTEEEEEEESCB
T ss_pred HHHccCCCCCCEEECC---------CCCcCccCHHHHhccccCCeecCCCCccc---c-chhhhhhhcccccEEECCCCc
Confidence 5668889888888874 4445544 778999999999999984322 1 1111 3348999999999999
Q ss_pred CCCccc----ccCCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCCCCCcccCCC----CCCcCceecccCc
Q 039311 594 IIELPE----CLGQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHCERLHSLPEL----PCDLSDIEAHCCS 660 (909)
Q Consensus 594 l~~lp~----~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L~~lp~l----~~sL~~L~i~~C~ 660 (909)
+..++. .....+.++.++|+++.+. .+|..+..+++|+.|++++| .++.+|.. .++|+.|++.+++
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 986432 2345678889999888776 57888999999999999997 56677752 3466667766653
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-19 Score=194.52 Aligned_cols=238 Identities=19% Similarity=0.155 Sum_probs=166.1
Q ss_pred ccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc-cceeccccc-------CCCcccEeccccccCccccCccc
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC-LLETHSSIQ-------YLNKLVVLNLKHCRSLTSLSTSI 452 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~-l~~~p~~i~-------~L~~L~~L~L~~c~~l~~lp~~~ 452 (909)
+..++|+.|++++|.+ .+|. +... |++|++++|.. ...+|..+. .+++|++|++++|.....+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4455667777777665 4443 3322 77777777655 234454444 57777777777765444555543
Q ss_pred ---cCCcCcEEEccCCCCCcccCcc--------ccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCc--Cccc
Q 039311 453 ---HLGSLKKLILSGCSNLMSFPEL--------SCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEG--LPSK 518 (909)
Q Consensus 453 ---~l~~L~~L~Ls~c~~l~~lp~~--------~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~--lp~~ 518 (909)
.+++|++|++++|...+. |.. ..+|++|++++|.+..++ ..++.+++|+.|++++|...+. +|..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 477777777777654443 431 157788888888888776 6788999999999999876654 3444
Q ss_pred c--cCCCCCCeeecccccccccccCcceeecC---cc-ccccCCCCeeecCccccccccccc-cCccCCCCCCCEEecCC
Q 039311 519 I--CKLKSLERLNLAEALKELKAEGIAIREVP---SS-IACLKNLGRLSFESFMCHEQMGLL-LPISFGLTSLTYLRLTD 591 (909)
Q Consensus 519 l--~~L~~L~~L~l~~~l~~L~l~~~~~~~lp---~~-i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~ 591 (909)
+ +.+++|+.|++. +|.+..++ .. +..+++|+.|++++|. +.+.. .+.+..+++|+.|+|++
T Consensus 195 ~~~~~l~~L~~L~L~---------~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 195 LCPLKFPTLQVLALR---------NAGMETPSGVCSALAAARVQLQGLDLSHNS---LRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp SCTTSCTTCCEEECT---------TSCCCCHHHHHHHHHHTTCCCSEEECTTSC---CCSSCCCSCCCCCTTCCEEECTT
T ss_pred HHhccCCCCCEEECC---------CCcCcchHHHHHHHHhcCCCCCEEECCCCc---CCcccchhhhhhcCCCCEEECCC
Confidence 4 788888888874 44555332 22 3567899999998843 33222 23455688999999999
Q ss_pred CCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 592 CGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 592 ~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
|.+.++|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+
T Consensus 263 N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 263 TGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 99998888777 899999999999998886 8889999999999875
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=200.84 Aligned_cols=222 Identities=16% Similarity=0.076 Sum_probs=183.7
Q ss_pred ccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccc
Q 039311 406 LATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDG 485 (909)
Q Consensus 406 ~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~ 485 (909)
.+++|++|+|++|......|..++.+++|++|+|++|. +...+....+++|++|++++|. +..+|.. .+|+.|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~-~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG-PSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-CCcCEEECcC
Confidence 56799999999998777667899999999999999976 5545544579999999999974 4455533 7899999999
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee-cCcccc-ccCCCCeeecC
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE-VPSSIA-CLKNLGRLSFE 563 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i~-~l~~L~~L~l~ 563 (909)
|.+..+|.. .+++|+.|++++|......|..++.+++|+.|++ ++|.+.. .|..+. .+++|+.|+++
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L---------s~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL---------KLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC---------TTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC---------CCCCCCCcChHHHhhhCCcccEEecC
Confidence 999988764 5789999999999888777888899999988887 4455554 455554 78999999999
Q ss_pred ccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCC-c
Q 039311 564 SFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERL-H 642 (909)
Q Consensus 564 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L-~ 642 (909)
+|..... +....+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+.. .
T Consensus 178 ~N~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 178 YNFIYDV-----KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TSCCCEE-----ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCccccc-----cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 8543322 445568999999999999999988899999999999999999999999999999999999998765 3
Q ss_pred ccCC
Q 039311 643 SLPE 646 (909)
Q Consensus 643 ~lp~ 646 (909)
.+|.
T Consensus 253 ~~~~ 256 (487)
T 3oja_A 253 TLRD 256 (487)
T ss_dssp HHHH
T ss_pred chHH
Confidence 4443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=176.83 Aligned_cols=145 Identities=21% Similarity=0.246 Sum_probs=90.9
Q ss_pred EEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccccc
Q 039311 344 YLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCL 421 (909)
Q Consensus 344 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l 421 (909)
..+..+..+..+|..++ .+|++|++++|.++.++. .+.++++|++|++++|.+....+. +..+++|++|++++|...
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 34455566777777664 578888888888888775 677888888888888876554443 777778888888777655
Q ss_pred ceecccccCCCcccEeccccccCccccCc-cc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccc--cCccccc
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLST-SI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQE--FPSSIER 497 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~--lp~~i~~ 497 (909)
...+..+..+++|++|++++|. +..++. .+ ++++|++|++++ |.+.. +|..++.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH---------------------NLIQSFKLPEYFSN 147 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCS---------------------SCCCCCCCCGGGGG
T ss_pred ccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcC---------------------CccceecCchhhcc
Confidence 5555666777777777776643 333322 11 234444443333 33332 4555566
Q ss_pred CCCCCEEeccCCCC
Q 039311 498 LSSLILLNLGNCLR 511 (909)
Q Consensus 498 l~~L~~L~L~~c~~ 511 (909)
+++|+.|++++|..
T Consensus 148 l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 148 LTNLEHLDLSSNKI 161 (276)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCCC
Confidence 66666666666543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-19 Score=194.29 Aligned_cols=238 Identities=17% Similarity=0.131 Sum_probs=152.1
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccc--cccccc-------cCCCCCEEecCCCcCCCcCCC-C--Ccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQ--LWKGVQ-------RLVNLKHINLSHSEHLTKIPD-L--SLA 407 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~--lp~~~~-------~L~~L~~L~Ls~~~~l~~~p~-l--~~l 407 (909)
.+|++|++++|.+ .+|..+.. .|++|+++++.+.. +|..+. .+++|++|++++|.+.+.+|. + ..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD-IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH-HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHHHH-HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3566677777777 66654422 27788888887754 454444 688888888888887766765 3 788
Q ss_pred ccccccccccccccceecccccCC-----CcccEeccccccCccccC-ccc-cCCcCcEEEccCCCCCccc--C-----c
Q 039311 408 TNLESLNFQGCTCLLETHSSIQYL-----NKLVVLNLKHCRSLTSLS-TSI-HLGSLKKLILSGCSNLMSF--P-----E 473 (909)
Q Consensus 408 ~~L~~L~L~~c~~l~~~p~~i~~L-----~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~Ls~c~~l~~l--p-----~ 473 (909)
++|++|++++|..... |..++.+ ++|++|++++|. +..++ ..+ ++++|++|++++|...+.. + .
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 8888888888765554 7777766 888888888865 44444 444 5888888888887654331 1 2
Q ss_pred cccCcceeeccccCccccC---cc-cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 474 LSCNIEELSLDGTAIQEFP---SS-IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 474 ~~~~L~~L~L~~~~i~~lp---~~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
...+|++|++++|.+..++ .. +..+++|+.|++++|......|. .
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------------------------~ 247 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA-------------------------------P 247 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC-------------------------------S
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch-------------------------------h
Confidence 3345666666666665332 22 24556666666666654443321 1
Q ss_pred cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCee
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFER 619 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~ 619 (909)
.+..+++|+.|++++|... ..+..+. ++|+.|+|++|.+..+|. +..+++|+.|+|++|.++.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~----~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK----QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS----SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccC----hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 1223344555555542221 1111122 678888888888888876 8888999999999988763
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-19 Score=209.05 Aligned_cols=320 Identities=16% Similarity=0.080 Sum_probs=163.2
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCcc-----CCCC-CCCCeeEEEcCCCCccccccccc
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSL-----SSKI-PPENLVSLEMPHSSIKQLWKGVQ 382 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~l-----p~~~-~~~~L~~L~L~~~~i~~lp~~~~ 382 (909)
++++|+.|++.+|.+.+..... +...+. .++|++|+++++.+..+ +..+ .+.+|++|+++++.+..++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKW-LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHH-HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhH-HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 5667777777655432110000 000011 45667777766665422 2222 45667777777766666666666
Q ss_pred cCCCCCEEecCCCcCCCc----CCCCCccccccccccccccccceecccccCCCcccEeccccccCccccC--cc-ccCC
Q 039311 383 RLVNLKHINLSHSEHLTK----IPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLS--TS-IHLG 455 (909)
Q Consensus 383 ~L~~L~~L~Ls~~~~l~~----~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp--~~-~~l~ 455 (909)
.+++|+.|++++...... ...+..+++|+.|++.++ ....+|..+..+++|++|++++|. +.... .. .+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCc
Confidence 677777777664322211 112556666666666653 334455566666677777777665 32211 11 2466
Q ss_pred cCcEEEccCCCCCcccC---ccccCcceeeccc-----------cCcc--ccCcccccCCCCCEEeccCCCCCCcCcccc
Q 039311 456 SLKKLILSGCSNLMSFP---ELSCNIEELSLDG-----------TAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 456 ~L~~L~Ls~c~~l~~lp---~~~~~L~~L~L~~-----------~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+|+.|+++++-....++ ....+|++|++++ +.++ .++..+..+++|++|+++.+......+..+
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 67777666332111121 2234566666662 3333 233334456666666664444433333334
Q ss_pred cC-CCCCCeeecccccccccccCcceee------cCccccccCCCCeeecCcccccc-ccccccCccC-CCCCCCEEecC
Q 039311 520 CK-LKSLERLNLAEALKELKAEGIAIRE------VPSSIACLKNLGRLSFESFMCHE-QMGLLLPISF-GLTSLTYLRLT 590 (909)
Q Consensus 520 ~~-L~~L~~L~l~~~l~~L~l~~~~~~~------lp~~i~~l~~L~~L~l~~~~~~~-~~~~~~~~~~-~l~~L~~L~Ls 590 (909)
+. +++|+.|++..+- ..+.++. ++..+..+++|+.|+++. |.+ +.+..+..+. .+++|+.|+|+
T Consensus 399 ~~~~~~L~~L~l~~~~-----~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~--~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLD-----REERITDLPLDNGVRSLLIGCKKLRRFAFYL--RQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHCCSCCEEEEEECS-----CCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC--CGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HhhCCCCcEEEEeecC-----CCccccCchHHHHHHHHHHhCCCCCEEEEec--CCCCccHHHHHHHHHhCccceEeecc
Confidence 33 6666666653210 1122222 222245566666666654 332 2222222222 25666666666
Q ss_pred CCCCCC--cccccCCCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCC
Q 039311 591 DCGIIE--LPECLGQLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 591 ~~~l~~--lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~ 639 (909)
+|.+.+ ++..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|+
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 666653 4445566666666666666655 244444566666666666665
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=176.63 Aligned_cols=231 Identities=22% Similarity=0.240 Sum_probs=174.5
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC--CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~ 419 (909)
+.++.+++.++.+|..+ +.++++|+|++|+|+.+|. .+.++++|++|+|++|.+.+.+|. |.++++|+++...++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56778889999999887 4689999999999999996 478999999999999998887774 7889998876665555
Q ss_pred cccee-cccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCcc-----ccCcceeeccccCcccc
Q 039311 420 CLLET-HSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPEL-----SCNIEELSLDGTAIQEF 491 (909)
Q Consensus 420 ~l~~~-p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~-----~~~L~~L~L~~~~i~~l 491 (909)
.+..+ |..++.+++|++|++++|. ++.+|... ...++..|++.++..+..++.. ...++.|++++|.|+.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 56666 5678999999999999964 66666544 4677888999888888777652 34577899999999999
Q ss_pred CcccccCCCCCEEeccCCCCCCcCccc-ccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccc
Q 039311 492 PSSIERLSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQ 570 (909)
Q Consensus 492 p~~i~~l~~L~~L~L~~c~~l~~lp~~-l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 570 (909)
|..+....+|+.|.+.++..++.+|.. +..+++|+.|++ ++|.++.+|.. .+.+|+.|.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL---------s~N~l~~lp~~--~~~~L~~L~--------- 229 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI---------SRTRIHSLPSY--GLENLKKLR--------- 229 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC---------TTSCCCCCCSS--SCTTCCEEE---------
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc---------CCCCcCccChh--hhccchHhh---------
Confidence 988888888999999888788888764 577777777776 44555666542 233444443
Q ss_pred cccccCccCCCCCCCEEecCCCC-CCCcccccCCCCCCcEEECCC
Q 039311 571 MGLLLPISFGLTSLTYLRLTDCG-IIELPECLGQLSSRSILLLEK 614 (909)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp~~l~~l~~L~~L~L~~ 614 (909)
+.++. +..+| .+..+++|+.+++.+
T Consensus 230 ------------------~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 230 ------------------ARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp ------------------CTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ------------------hccCCCcCcCC-CchhCcChhhCcCCC
Confidence 33332 22344 366677777777765
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.2e-16 Score=167.72 Aligned_cols=200 Identities=22% Similarity=0.238 Sum_probs=119.6
Q ss_pred cccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEE
Q 039311 381 VQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKL 460 (909)
Q Consensus 381 ~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 460 (909)
+.++++|+.++++++.+....+.+. ++|++|++++|......+..+..+++|++|++++|. ++.++....+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEE
Confidence 3445556666666554332222232 456666666665544445667777777777777743 4444443334444444
Q ss_pred EccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccccccccc
Q 039311 461 ILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAE 540 (909)
Q Consensus 461 ~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~ 540 (909)
++++ |.+..+|..+..+++|+.|++++|......|..+..+++|+.|++.
T Consensus 83 ~Ls~---------------------N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~--------- 132 (290)
T 1p9a_G 83 DLSH---------------------NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK--------- 132 (290)
T ss_dssp ECCS---------------------SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT---------
T ss_pred ECCC---------------------CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC---------
Confidence 4444 5555666666777777777777765443333445555555555442
Q ss_pred CcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCCCee
Q 039311 541 GIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFER 619 (909)
Q Consensus 541 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~ 619 (909)
+|.+..+|. ..+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+++.
T Consensus 133 ~N~l~~~~~--------------------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 133 GNELKTLPP--------------------------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp TSCCCCCCT--------------------------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCccCh--------------------------hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 222222221 1234567777888888888777654 4678888888888888888
Q ss_pred cchhhccCCCCCEEeecCCC
Q 039311 620 IPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 620 lp~~i~~l~~L~~L~L~~c~ 639 (909)
+|..+..+++|+.|+|++|+
T Consensus 187 ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCC
T ss_pred cChhhcccccCCeEEeCCCC
Confidence 88888777788888888764
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=182.75 Aligned_cols=223 Identities=18% Similarity=0.221 Sum_probs=112.3
Q ss_pred eeEEEcCCCCccccccccccC--CCCCEEecCCCcCCCcCCCCCccccccccccccccccce-ecccccCCCcccEeccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQRL--VNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE-THSSIQYLNKLVVLNLK 440 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~~L--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~-~p~~i~~L~~L~~L~L~ 440 (909)
++.++++++.+. +..+..+ ++++.|+++++.+....+.+..+++|++|++++|..... ++..++.+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455556555554 3344455 667777777776666666666677777777777664433 55666677777777777
Q ss_pred cccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc--Ccc
Q 039311 441 HCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG--LPS 517 (909)
Q Consensus 441 ~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~ 517 (909)
+|......+..+ .+++|++|++++|..+.. ..+|..+..+++|++|++++|..+.. ++.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCH------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCH------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 764322333333 366666666666533221 01333344555555555555522221 333
Q ss_pred cccCCC-CCCeeecccccccccccCcce--eecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCC-
Q 039311 518 KICKLK-SLERLNLAEALKELKAEGIAI--REVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCG- 593 (909)
Q Consensus 518 ~l~~L~-~L~~L~l~~~l~~L~l~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~- 593 (909)
.+..++ +|+.|++..+-. .+ ..+|..+..+++|+.|++++ |..+.+..++.+..+++|+.|++++|.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~-------~~~~~~l~~~~~~~~~L~~L~l~~--~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRK-------NLQKSDLSTLVRRCPNLVHLDLSD--SVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp HHHHSCTTCCEEECCSCGG-------GSCHHHHHHHHHHCTTCSEEECTT--CTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred HHHhcccCCCEEEeCCCcc-------cCCHHHHHHHHhhCCCCCEEeCCC--CCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 344444 444444422100 00 22333444455555555555 222223333344445556666665553
Q ss_pred CCC-cccccCCCCCCcEEECCCC
Q 039311 594 IIE-LPECLGQLSSRSILLLEKN 615 (909)
Q Consensus 594 l~~-lp~~l~~l~~L~~L~L~~n 615 (909)
+.. ....+..+++|+.|++++|
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHhcCCCCCEEeccCc
Confidence 111 1123445555666666555
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-18 Score=205.12 Aligned_cols=191 Identities=17% Similarity=0.159 Sum_probs=94.2
Q ss_pred CCCccEEEeeCCCCCccC-CCC-C-C-CCeeEEEcCCCC-cc--ccccccccCCCCCEEecCCCcCCCc----CCC-CCc
Q 039311 339 STELRYLQWHGCPLKSLS-SKI-P-P-ENLVSLEMPHSS-IK--QLWKGVQRLVNLKHINLSHSEHLTK----IPD-LSL 406 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp-~~~-~-~-~~L~~L~L~~~~-i~--~lp~~~~~L~~L~~L~Ls~~~~l~~----~p~-l~~ 406 (909)
+++|++|+++++.+.... ..+ . . .+|++|+++++. +. .++.....+++|++|+|++|.+... ++. ...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 455666666665433211 111 1 1 236666666554 11 1222233566666666666653322 111 234
Q ss_pred ccccccccccccccc----ceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcc---cC---ccc
Q 039311 407 ATNLESLNFQGCTCL----LETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMS---FP---ELS 475 (909)
Q Consensus 407 l~~L~~L~L~~c~~l----~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~---lp---~~~ 475 (909)
+++|++|++++|... ..++..+..+++|++|++++|. +..++..+ ++++|+.|+++++..... .+ ...
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 566666666665443 2334444556666666666643 33344333 366666666654322211 11 122
Q ss_pred cCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc-CcccccCCCCCCeeec
Q 039311 476 CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG-LPSKICKLKSLERLNL 530 (909)
Q Consensus 476 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~-lp~~l~~L~~L~~L~l 530 (909)
.+|+.|.+.++....+|..+..+++|++|++++|..... ++..+..+++|+.|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 355566666555556666666666666666666652221 1222456666666665
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=161.94 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=83.6
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 417 (909)
..++.++++++.++.+|..+. .+|++|++++|.+..++. .+..+++|++|++++|.+....+. +..+++|++|++++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 356788888888888887665 678888888888888774 577888888888888875544444 57778888888887
Q ss_pred ccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccC
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSG 464 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~ 464 (909)
|......+..+..+++|++|++++|. ++.++.. + ++++|++|++++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCC
Confidence 76544334455667777777777643 3343332 2 355555555554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=168.82 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=49.4
Q ss_pred cCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 578 SFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
+..+++|+.|++++|.+.+++. +..+++|+.|+|++|+++.++ .+..+++|+.|++++|+ +...|
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe-eecCC
Confidence 5556778888888888777665 777888888888888888777 37888888888888875 44444
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-18 Score=185.33 Aligned_cols=197 Identities=21% Similarity=0.291 Sum_probs=102.7
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCc-CCC-CCccccccccccccccccceecccccCCCcccEecc
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTK-IPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~-~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L 439 (909)
.+++.|+++++.+...+..+..+++|++|++++|.+... +|. +..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 345555555555555554455566666666666654332 333 555666666666666554455556666666777777
Q ss_pred ccccCccc--cCccc-cCCcCcEEEccCCCCCcc--cCc---ccc-CcceeeccccC--c--cccCcccccCCCCCEEec
Q 039311 440 KHCRSLTS--LSTSI-HLGSLKKLILSGCSNLMS--FPE---LSC-NIEELSLDGTA--I--QEFPSSIERLSSLILLNL 506 (909)
Q Consensus 440 ~~c~~l~~--lp~~~-~l~~L~~L~Ls~c~~l~~--lp~---~~~-~L~~L~L~~~~--i--~~lp~~i~~l~~L~~L~L 506 (909)
++|..++. ++..+ ++++|++|++++|..+.. ++. ..+ +|++|++++|. + ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 66644442 44433 466666666666533221 111 112 33444444442 1 234455555666666666
Q ss_pred cCCCC-CCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCC
Q 039311 507 GNCLR-LEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLT 585 (909)
Q Consensus 507 ~~c~~-l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~ 585 (909)
++|.. ....+.. +..+++|+.|++++ |.......+..+..+++|+
T Consensus 230 ~~~~~l~~~~~~~--------------------------------l~~l~~L~~L~l~~--~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 230 SDSVMLKNDCFQE--------------------------------FFQLNYLQHLSLSR--CYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp TTCTTCCGGGGGG--------------------------------GGGCTTCCEEECTT--CTTCCGGGGGGGGGCTTCC
T ss_pred CCCCcCCHHHHHH--------------------------------HhCCCCCCEeeCCC--CCCCCHHHHHHHhcCCCCC
Confidence 66542 2233333 44445555555555 3333333333455577777
Q ss_pred EEecCCC
Q 039311 586 YLRLTDC 592 (909)
Q Consensus 586 ~L~Ls~~ 592 (909)
.|++++|
T Consensus 276 ~L~l~~~ 282 (336)
T 2ast_B 276 TLQVFGI 282 (336)
T ss_dssp EEECTTS
T ss_pred EEeccCc
Confidence 7777777
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=161.34 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=42.8
Q ss_pred CCCCEEecCCCC-CCCcc-cccCCC-CCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCC
Q 039311 582 TSLTYLRLTDCG-IIELP-ECLGQL-SSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERL 641 (909)
Q Consensus 582 ~~L~~L~Ls~~~-l~~lp-~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 641 (909)
++|+.|++++|. +..+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..|
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC---
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccCC
Confidence 567777777774 76664 456777 8888888888888888865 6888888888887643
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-18 Score=205.48 Aligned_cols=366 Identities=15% Similarity=0.136 Sum_probs=184.0
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCC--CCCCccEEEeeCC-CCCc--cCCCC-CCCCeeEEEcCCCCccc-----c
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGL--ESTELRYLQWHGC-PLKS--LSSKI-PPENLVSLEMPHSSIKQ-----L 377 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l--~~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~~~i~~-----l 377 (909)
..+++|+.|++.++.+.+... ..+ .+++|+.|++.+| .+.. ++..+ .+++|++|++++|.+.. +
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCL-----ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHH-----HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HhCCCCCeEEeeCcEEcHHHH-----HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 356677777777554322110 001 1456777777666 3322 33333 45667777777666443 2
Q ss_pred ccccccCCCCCEEecCCCcCCCcCC-----C-CCccccccccccccccccceecccccCCCcccEeccccccC------c
Q 039311 378 WKGVQRLVNLKHINLSHSEHLTKIP-----D-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS------L 445 (909)
Q Consensus 378 p~~~~~L~~L~~L~Ls~~~~l~~~p-----~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~------l 445 (909)
+.....+++|++|++++|. ..++ . +..+++|++|++++|.....++..+..+++|+.|++..|.. +
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 2223355667777776664 1111 1 23456677777776655555666666666777776554421 1
Q ss_pred cccCccc-cCCcCcEE-EccCCCCCcccCc---cccCcceeeccccCccc--cCcccccCCCCCEEeccCCCCCCcCccc
Q 039311 446 TSLSTSI-HLGSLKKL-ILSGCSNLMSFPE---LSCNIEELSLDGTAIQE--FPSSIERLSSLILLNLGNCLRLEGLPSK 518 (909)
Q Consensus 446 ~~lp~~~-~l~~L~~L-~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~l~~lp~~ 518 (909)
..++..+ ++++|+.| .+.+. ....++. ...+|++|++++|.+.. ++..+..+++|+.|++++|.....++..
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l 333 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHH
Confidence 1122222 35555555 22221 1122332 24567777777776552 3333556777777777776221222222
Q ss_pred ccCCCCCCeeecccccccccccCccee--ecCccccccCCCCeeecCccccccccccccCccC-CCCCCCEEecC--C--
Q 039311 519 ICKLKSLERLNLAEALKELKAEGIAIR--EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLT--D-- 591 (909)
Q Consensus 519 l~~L~~L~~L~l~~~l~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls--~-- 591 (909)
...+++|+.|++..+-..-....+.++ .+......+++|+.|.+. |+++....+..+. .+++|+.|+++ +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~---~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~ 410 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF---CRQMTNAALITIARNRPNMTRFRLCIIEPK 410 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE---ESCCCHHHHHHHHHHCTTCCEEEEEESSTT
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh---cCCcCHHHHHHHHhhCCCcceeEeecccCC
Confidence 334667777766321000000011111 111112346777777554 4444443333333 36788888887 2
Q ss_pred --CCCCCcc------cccCCCCCCcEEECCCCCCe-ecchhhcc-CCCCCEEeecCCCCCcc-cC---CCCCCcCceecc
Q 039311 592 --CGIIELP------ECLGQLSSRSILLLEKNNFE-RIPESIIQ-LSHLFSLGISHCERLHS-LP---ELPCDLSDIEAH 657 (909)
Q Consensus 592 --~~l~~lp------~~l~~l~~L~~L~L~~n~l~-~lp~~i~~-l~~L~~L~L~~c~~L~~-lp---~l~~sL~~L~i~ 657 (909)
+.++..| ..+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|..-.. ++ ...++|+.|++.
T Consensus 411 ~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~ 489 (594)
T 2p1m_B 411 APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR 489 (594)
T ss_dssp CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence 3344222 2255677888888876 444 22333433 77888888888763111 11 124678888888
Q ss_pred cCcccccccCcchhccccCCCcceeEecccCC
Q 039311 658 CCSSLEALSGLSILFTQTSWNSQFFYFVNCFK 689 (909)
Q Consensus 658 ~C~~L~~l~~~~~l~~~~~~~~~~l~~~~C~~ 689 (909)
+|+- +...... +. .....++.+.+.+|+.
T Consensus 490 ~n~~-~~~~~~~-~~-~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 490 DCPF-GDKALLA-NA-SKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCSC-CHHHHHH-TG-GGGGGSSEEEEESSCC
T ss_pred CCCC-cHHHHHH-HH-HhCCCCCEEeeeCCCC
Confidence 8874 2211110 00 1123456778888865
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=158.64 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=44.7
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecc-cccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHS-SIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~-~i~~L~~L~~L~L~ 440 (909)
++++++++++.++.+|..+. ++|+.|++++|.+....+. +..+++|++|++++|... .++. .++.+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 45677777777777776554 5677777777765444332 666666666666665432 2332 23445555555555
Q ss_pred c
Q 039311 441 H 441 (909)
Q Consensus 441 ~ 441 (909)
+
T Consensus 94 ~ 94 (270)
T 2o6q_A 94 D 94 (270)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=163.81 Aligned_cols=190 Identities=19% Similarity=0.132 Sum_probs=113.0
Q ss_pred CCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNF 415 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 415 (909)
..|++|++++|.++.++. .+ .+.+|++|++++|.+..++. .+..+++|++|++++|.+....+. +..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 456677777777766664 33 56677777777777766654 466677777777777765555443 666777777777
Q ss_pred ccccccceecccccCCCcccEeccccccCccc--cCccc-cCCcCcEEEccCCCCCcccCccc---cCcc----eeeccc
Q 039311 416 QGCTCLLETHSSIQYLNKLVVLNLKHCRSLTS--LSTSI-HLGSLKKLILSGCSNLMSFPELS---CNIE----ELSLDG 485 (909)
Q Consensus 416 ~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~---~~L~----~L~L~~ 485 (909)
++|......+..++.+++|++|++++|. ++. +|..+ ++++|+.|++++|......+..+ .+++ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 7765544444456677777777777654 333 34444 46677777777654433222221 2333 566666
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
|.+..+|.......+|+.|++++|......+..+..+++|+.|++
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 666666665555556777777766533222223455666666655
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=167.63 Aligned_cols=217 Identities=18% Similarity=0.175 Sum_probs=117.8
Q ss_pred CeeEEEcCCCCccc-----cccccccCCCCCEEecCCCcCCCcCCC-C--Cccccccccccccccccceec----ccccC
Q 039311 363 NLVSLEMPHSSIKQ-----LWKGVQRLVNLKHINLSHSEHLTKIPD-L--SLATNLESLNFQGCTCLLETH----SSIQY 430 (909)
Q Consensus 363 ~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~c~~l~~~p----~~i~~ 430 (909)
.++.|.+.+..+.. +.. ...+++|++|++++|.+....|. + ..+++|++|++++|......+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45566666555431 111 22346688888888877766665 4 778888888888877654333 23456
Q ss_pred CCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcc--c-----CccccCcceeeccccCccccCcc----cccC
Q 039311 431 LNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMS--F-----PELSCNIEELSLDGTAIQEFPSS----IERL 498 (909)
Q Consensus 431 L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~--l-----p~~~~~L~~L~L~~~~i~~lp~~----i~~l 498 (909)
+++|++|++++|......+..+ ++++|++|++++|...+. + .....+|++|++++|.++.+|.. ++.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 7788888888765433333333 577777777777654321 1 11222333444444443332221 2333
Q ss_pred CCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCcc
Q 039311 499 SSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 499 ~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
++|++|+|++|......|..++. +
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~--------------------------------------------------------~ 247 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPR--------------------------------------------------------C 247 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSS--------------------------------------------------------C
T ss_pred CCCCEEECCCCCCCccchhhHHh--------------------------------------------------------c
Confidence 44444444443322222221111 1
Q ss_pred CCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 579 FGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
..+++|++|+|++|.+..+|..+. ++|+.|+|++|+++.+|. +..+++|+.|+|++|+
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 123566666666666666665553 567777777777666654 5566677777776654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-17 Score=186.34 Aligned_cols=248 Identities=16% Similarity=0.114 Sum_probs=127.8
Q ss_pred EcCCCCccccccccccCCCCCEEecCCCcCCCcCC-----CCCccccccccccccccc---cceeccc-------ccCCC
Q 039311 368 EMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-----DLSLATNLESLNFQGCTC---LLETHSS-------IQYLN 432 (909)
Q Consensus 368 ~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-----~l~~l~~L~~L~L~~c~~---l~~~p~~-------i~~L~ 432 (909)
.+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|++++|.. ...+|.. +..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 33334444455555556666666666655433211 144555566666555421 1222332 35666
Q ss_pred cccEeccccccCcc----ccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccC---------
Q 039311 433 KLVVLNLKHCRSLT----SLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERL--------- 498 (909)
Q Consensus 433 ~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l--------- 498 (909)
+|++|+|++|..-. .+|..+ .+++|++|++++|......+. .++..+..+
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~----------------~l~~~l~~l~~~~~~~~~ 158 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA----------------KIARALQELAVNKKAKNA 158 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH----------------HHHHHHHHHHHHHHHHTC
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH----------------HHHHHHHHHhhhhhcccC
Confidence 67777776654222 233333 366666666666543211110 111112222
Q ss_pred CCCCEEeccCCCCC-CcCc---ccccCCCCCCeeecccccccccccCccee------ecCccccccCCCCeeecCccccc
Q 039311 499 SSLILLNLGNCLRL-EGLP---SKICKLKSLERLNLAEALKELKAEGIAIR------EVPSSIACLKNLGRLSFESFMCH 568 (909)
Q Consensus 499 ~~L~~L~L~~c~~l-~~lp---~~l~~L~~L~~L~l~~~l~~L~l~~~~~~------~lp~~i~~l~~L~~L~l~~~~~~ 568 (909)
++|++|++++|... ..+| ..+..+++|+.|++.. |.+. -+|..+..+++|+.|++++|...
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~---------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ---------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS---------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC---------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 44444444444332 1222 2233444444444422 1221 12224556666666666653221
Q ss_pred ccc-ccccCccCCCCCCCEEecCCCCCCC-----ccccc--CCCCCCcEEECCCCCCee-----cchhh-ccCCCCCEEe
Q 039311 569 EQM-GLLLPISFGLTSLTYLRLTDCGIIE-----LPECL--GQLSSRSILLLEKNNFER-----IPESI-IQLSHLFSLG 634 (909)
Q Consensus 569 ~~~-~~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~i-~~l~~L~~L~ 634 (909)
... ......+..+++|+.|+|++|.+.. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 100 1112234567788888888888774 46666 448888888888888886 77777 5688888888
Q ss_pred ecCCCC
Q 039311 635 ISHCER 640 (909)
Q Consensus 635 L~~c~~ 640 (909)
+++|+.
T Consensus 310 l~~N~l 315 (386)
T 2ca6_A 310 LNGNRF 315 (386)
T ss_dssp CTTSBS
T ss_pred ccCCcC
Confidence 888753
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-15 Score=159.62 Aligned_cols=191 Identities=20% Similarity=0.240 Sum_probs=116.9
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
+.+++.++++++.++.+|..+. .++++|++++|.+..++ ..+..+++|++|+|++|.+.. ++..+.+++|++|++++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSH 86 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCS
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCC
Confidence 4567778888888888887775 68888888888888775 567888888888888887543 44457777888888887
Q ss_pred ccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcc-
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS- 494 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~- 494 (909)
|.. ..+|..+..+++|++|++++|. ++.+|.. + ++++|+.|++++| .+..+|..
T Consensus 87 N~l-~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N---------------------~l~~~~~~~ 143 (290)
T 1p9a_G 87 NQL-QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN---------------------ELKTLPPGL 143 (290)
T ss_dssp SCC-SSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS---------------------CCCCCCTTT
T ss_pred CcC-CcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC---------------------CCCccChhh
Confidence 653 4667677777777777777753 4444432 2 3555555555553 33333332
Q ss_pred cccCCCCCEEeccCCCCCCcCcc-cccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCc
Q 039311 495 IERLSSLILLNLGNCLRLEGLPS-KICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFES 564 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 564 (909)
+..+++|+.|+|++|... .+|. .+..+++|+.|++ ++|.+..+|..+..+.+|+.|++.+
T Consensus 144 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L---------~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL---------QENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEEC---------CSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred cccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEEC---------CCCcCCccChhhcccccCCeEEeCC
Confidence 345555555655555332 3332 2344555555544 3334444444444444444444443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=159.87 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=114.7
Q ss_pred CCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCC--CCCccccccccccccccccceec-cc
Q 039311 352 LKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIP--DLSLATNLESLNFQGCTCLLETH-SS 427 (909)
Q Consensus 352 l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p-~~ 427 (909)
++.+|. + ..+|++|++++|+++.+|. .+..+++|++|++++|..++.++ .+..+++|++|++++|..+..++ ..
T Consensus 23 l~~ip~-~-~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS-L-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC-C-CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC-C-CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 667777 3 3478888888888888775 57778888888888886344444 37788888888888744444554 46
Q ss_pred ccCCCcccEeccccccCccccCccccCCcCc---EEEccCCCCCcccCc----cccCcc-eeeccccCccccCcccccCC
Q 039311 428 IQYLNKLVVLNLKHCRSLTSLSTSIHLGSLK---KLILSGCSNLMSFPE----LSCNIE-ELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 428 i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~---~L~Ls~c~~l~~lp~----~~~~L~-~L~L~~~~i~~lp~~i~~l~ 499 (909)
++.+++|++|++++|. ++.+|....+++|+ .|++++|..+..+|. ...+|+ .|++++|.++.+|......+
T Consensus 101 f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp EECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred hCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 7788888888888854 55677634566666 777777644554443 133555 66666666666666544446
Q ss_pred CCCEEeccCCCCCCcCc-ccccCC-CCCCeeec
Q 039311 500 SLILLNLGNCLRLEGLP-SKICKL-KSLERLNL 530 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp-~~l~~L-~~L~~L~l 530 (909)
+|+.|++++|..+..+| ..+..+ ++|+.|++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 66777776664344443 334555 55555554
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-17 Score=198.43 Aligned_cols=337 Identities=16% Similarity=0.070 Sum_probs=219.8
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCC-CCCCccEEEeeCCCCCc-----cCCCC-CCCCeeEEEcCCCC--cc--ccc
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGL-ESTELRYLQWHGCPLKS-----LSSKI-PPENLVSLEMPHSS--IK--QLW 378 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l-~~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~--i~--~lp 378 (909)
.+++|+.|++.++.... ........ .+++|++|++++|.+.. ++... .+.+|++|+++++. +. .++
T Consensus 128 ~~~~L~~L~L~~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFS---TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HCTTCCEEEEESCEEEE---HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred hCCCCcEEeCCCcCCCC---HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 68999999999763111 00011111 16899999999987543 33333 56799999999986 22 233
Q ss_pred cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc------cceecccccCCCcccEe-ccccccCccccCc
Q 039311 379 KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC------LLETHSSIQYLNKLVVL-NLKHCRSLTSLST 450 (909)
Q Consensus 379 ~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~------l~~~p~~i~~L~~L~~L-~L~~c~~l~~lp~ 450 (909)
.-+..+++|++|++++|...+.+|. +..+++|++|++..|.. ...++..++.+++|+.| .+.+.. ...++.
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~ 283 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPA 283 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHH
Confidence 3345679999999999865555554 67889999999876642 33455678889999998 454422 344554
Q ss_pred cc-cCCcCcEEEccCCCCCcc-c---CccccCcceeeccccCcc--ccCcccccCCCCCEEeccCC--------CCCCc-
Q 039311 451 SI-HLGSLKKLILSGCSNLMS-F---PELSCNIEELSLDGTAIQ--EFPSSIERLSSLILLNLGNC--------LRLEG- 514 (909)
Q Consensus 451 ~~-~l~~L~~L~Ls~c~~l~~-l---p~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c--------~~l~~- 514 (909)
.. .+++|+.|++++|..... + ....++|++|+++++ +. .++.....+++|+.|++.+| .....
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~ 362 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence 44 589999999999983221 1 224578999999988 43 34444456899999999543 22221
Q ss_pred Ccccc-cCCCCCCeeecccccccccccCcceee-cCccc-cccCCCCeeecCcc---cccccccc----ccCc-cCCCCC
Q 039311 515 LPSKI-CKLKSLERLNLAEALKELKAEGIAIRE-VPSSI-ACLKNLGRLSFESF---MCHEQMGL----LLPI-SFGLTS 583 (909)
Q Consensus 515 lp~~l-~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i-~~l~~L~~L~l~~~---~~~~~~~~----~~~~-~~~l~~ 583 (909)
-...+ ..+++|+.|.+.. +.++. .+..+ ..+++|+.|+++.+ .|+.+... .++. +..+++
T Consensus 363 ~l~~l~~~~~~L~~L~~~~---------~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFC---------RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEE---------SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred HHHHHHHhchhHHHHHHhc---------CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 11112 3478888885522 22221 11223 35889999999821 25555522 1111 445789
Q ss_pred CCEEecCCCCCCC-cccccC-CCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCCCCcc----cCCCCCCcCcee
Q 039311 584 LTYLRLTDCGIIE-LPECLG-QLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCERLHS----LPELPCDLSDIE 655 (909)
Q Consensus 584 L~~L~Ls~~~l~~-lp~~l~-~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~----lp~l~~sL~~L~ 655 (909)
|+.|+|++ .+.+ .+..+. .+++|+.|+|++|.++ .++.....+++|+.|+|++|+.-.. +....++|+.|+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 99999987 5553 333444 3889999999999986 3333337799999999999986221 222356899999
Q ss_pred cccCcc
Q 039311 656 AHCCSS 661 (909)
Q Consensus 656 i~~C~~ 661 (909)
+++|+.
T Consensus 513 l~~~~~ 518 (594)
T 2p1m_B 513 MSSCSV 518 (594)
T ss_dssp EESSCC
T ss_pred eeCCCC
Confidence 999975
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=161.53 Aligned_cols=182 Identities=18% Similarity=0.259 Sum_probs=99.8
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
.+|++|+++++.++.+|....+.+|++|++++|.+..++. +..+++|++|++++|.+ +.++.+..+++|++|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC-CCchhhcCCCCCCEEECCCCC
Confidence 3455555555555555543355666666666666666655 66666666666666653 334556666666666666654
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc--cccCcceeeccccCccccCccccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE--LSCNIEELSLDGTAIQEFPSSIER 497 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~--~~~~L~~L~L~~~~i~~lp~~i~~ 497 (909)
.. .++ .++.+++|++|++++|. ++.++....+++|+.|++++|.. ..++. .+.+|+.|++++|.+..++. +..
T Consensus 119 l~-~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~ 193 (308)
T 1h6u_A 119 IT-DVT-PLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDNKISDISP-LAS 193 (308)
T ss_dssp CC-CCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGG-GGG
T ss_pred CC-Cch-hhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcC-CCChhhcCCCCCCEEECCCCccCcChh-hcC
Confidence 32 233 25666666666666643 44444433456666666665432 22221 22345555555555555544 556
Q ss_pred CCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 498 LSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 498 l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
+++|+.|++++|... .++ .+..+++|+.|++
T Consensus 194 l~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~l 224 (308)
T 1h6u_A 194 LPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTL 224 (308)
T ss_dssp CTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEE
T ss_pred CCCCCEEEccCCccC-ccc-cccCCCCCCEEEc
Confidence 666666666666433 233 2555555555555
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=163.37 Aligned_cols=232 Identities=20% Similarity=0.247 Sum_probs=141.2
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecc-cccCCCcccEeccccc
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHS-SIQYLNKLVVLNLKHC 442 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~-~i~~L~~L~~L~L~~c 442 (909)
++++-++++++++|.++ .++++.|+|++|++....++ |.++++|++|+|++|.....+|. .+..+++|+.+...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45667778888888766 36788888888875544443 78888888888888877666664 4567777776555555
Q ss_pred cCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCccc-
Q 039311 443 RSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSK- 518 (909)
Q Consensus 443 ~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~- 518 (909)
+.++.++... ++++|++|++++ |.+..+|. .+....++..|++.++..+..+|..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISN---------------------TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEE---------------------ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred CcccccCchhhhhccccccccccc---------------------cccccCCchhhcccchhhhhhhccccccccccccc
Confidence 5566664432 356666665555 33333332 2334445566666555444444432
Q ss_pred ccCCC-CCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCC-CCCCC
Q 039311 519 ICKLK-SLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTD-CGIIE 596 (909)
Q Consensus 519 l~~L~-~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-~~l~~ 596 (909)
+..+. .|+.|++ ++|.++.+|.. .....+|+.|++++ |.+..
T Consensus 149 f~~~~~~l~~L~L---------~~N~i~~i~~~---------------------------~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 149 FVGLSFESVILWL---------NKNGIQEIHNS---------------------------AFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp STTSBSSCEEEEC---------CSSCCCEECTT---------------------------SSTTEEEEEEECTTCTTCCC
T ss_pred hhhcchhhhhhcc---------ccccccCCChh---------------------------hccccchhHHhhccCCcccC
Confidence 22221 2223322 33334444332 22345666677664 44556
Q ss_pred ccc-ccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC--CCCcCceecc
Q 039311 597 LPE-CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL--PCDLSDIEAH 657 (909)
Q Consensus 597 lp~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~ 657 (909)
+|. .+..+++|+.|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.+ +++|+.+++.
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred CCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 664 457788888888888888888753 3677888888888888888753 3456666554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-17 Score=184.72 Aligned_cols=250 Identities=14% Similarity=0.115 Sum_probs=155.2
Q ss_pred CCCccCCCC-CCCCeeEEEcCCCCccc-----cccccccCCCCCEEecCCCcCC---CcCCC--------CCcccccccc
Q 039311 351 PLKSLSSKI-PPENLVSLEMPHSSIKQ-----LWKGVQRLVNLKHINLSHSEHL---TKIPD--------LSLATNLESL 413 (909)
Q Consensus 351 ~l~~lp~~~-~~~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~Ls~~~~l---~~~p~--------l~~l~~L~~L 413 (909)
.+..++..+ .+.+|++|+|++|.+.. ++..+..+++|++|+|++|... ..+|. +..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 334444444 45678888888887764 4455778888888888886422 23332 3677889999
Q ss_pred ccccccccc----eecccccCCCcccEeccccccCccc----cCccc-cC---------CcCcEEEccCCCCC-cccCcc
Q 039311 414 NFQGCTCLL----ETHSSIQYLNKLVVLNLKHCRSLTS----LSTSI-HL---------GSLKKLILSGCSNL-MSFPEL 474 (909)
Q Consensus 414 ~L~~c~~l~----~~p~~i~~L~~L~~L~L~~c~~l~~----lp~~~-~l---------~~L~~L~Ls~c~~l-~~lp~~ 474 (909)
+|++|.... .+|..+..+++|++|+|++|..-.. ++..+ .+ ++|++|++++|... ..++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~-- 177 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK-- 177 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--
Confidence 999887665 4677888899999999999763211 22111 12 67777777776533 1121
Q ss_pred ccCcceeeccccCccccCcccccCCCCCEEeccCCCCCC-----cCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 475 SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLE-----GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 475 ~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~-----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
.+...+..+++|+.|++++|.... ..|..+..+++|+.|++..|- +.......+|.
T Consensus 178 ---------------~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~----l~~~g~~~l~~ 238 (386)
T 2ca6_A 178 ---------------EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT----FTHLGSSALAI 238 (386)
T ss_dssp ---------------HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC----CHHHHHHHHHH
T ss_pred ---------------HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC----CCcHHHHHHHH
Confidence 111344556666666666664331 122245556666666553220 00011144566
Q ss_pred cccccCCCCeeecCccccccccccccC-cc--CCCCCCCEEecCCCCCCC-----ccccc-CCCCCCcEEECCCCCCeec
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLP-IS--FGLTSLTYLRLTDCGIIE-----LPECL-GQLSSRSILLLEKNNFERI 620 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~--~~l~~L~~L~Ls~~~l~~-----lp~~l-~~l~~L~~L~L~~n~l~~l 620 (909)
.+..+++|+.|++++|.........++ .+ ..+++|+.|+|++|.+.. +|..+ .++++|+.|++++|.++..
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 677777788888777332221111112 23 347899999999999996 88887 6689999999999999844
Q ss_pred c
Q 039311 621 P 621 (909)
Q Consensus 621 p 621 (909)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=160.57 Aligned_cols=200 Identities=19% Similarity=0.144 Sum_probs=111.1
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
.+|+.|++.++.++.++....+.+|++|++++|.+..++ .+..+++|++|++++|.+....+. ++.+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 445555555555555544345555666666655555543 455566666666666554433333 455666666666665
Q ss_pred cccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCc---cccCcceeeccccCccccCc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGTAIQEFPS 493 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~lp~ 493 (909)
......+..++.+++|++|++++| .++.++... ++++|+.|++++|......+. .+.+|+.|++++|.+..+|.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 544333334556666666666664 344444322 456666666666543322221 23456677777777776665
Q ss_pred c-cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCC
Q 039311 494 S-IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKN 556 (909)
Q Consensus 494 ~-i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~ 556 (909)
. ++.+++|+.|++++|.... .+++|+.|++..+ ...+.+|.+++.+..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n--------~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN--------KHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHH--------HTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHH--------hCCCcccCcccccCC
Confidence 4 6788899999998886543 3455666655322 122356666665544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7e-15 Score=156.71 Aligned_cols=223 Identities=20% Similarity=0.172 Sum_probs=142.1
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL 421 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l 421 (909)
+..+.+.++.+..+.....+.+|+.|+++++.+..++ ++..+++|++|++++|.+. .++.+..+++|++|++++|...
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccC
Confidence 3344445555555544446789999999999999875 4889999999999999854 4677999999999999999766
Q ss_pred ceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
...+..++.+++|++|++++|. ++.++.. + ++++|++|++++|... .+|. ..++.++
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-------------------~~~~~l~ 157 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPK-------------------GVFDKLT 157 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCT-------------------TTTTTCT
T ss_pred ccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccC-ccCH-------------------HHhccCc
Confidence 5555668999999999999975 5566554 3 5888888888886432 3221 1134444
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCccccccccccccCcc
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
+|+.|++++|......+..++.+++|+.|++ ++|.+..++. .+..+++|+.|++++|.. .
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L---------~~N~l~~~~~~~~~~l~~L~~L~l~~N~~----------~ 218 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRL---------YQNQLKSVPDGVFDRLTSLQYIWLHDNPW----------D 218 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC---------CSSCCSCCCTTTTTTCTTCCEEECCSSCB----------C
T ss_pred cCCEEECCCCCcCccCHHHhcCCccCCEEEC---------CCCcCCccCHHHHhCCcCCCEEEccCCCc----------c
Confidence 5555555554333222233344444444444 2233333333 245555566666555221 1
Q ss_pred CCCCCCCEEecCCCCCC-CcccccCCCCC
Q 039311 579 FGLTSLTYLRLTDCGII-ELPECLGQLSS 606 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~ 606 (909)
+.+++|+.|++..|.+. .+|.+++.++.
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 23456666666666665 46666655543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-16 Score=174.61 Aligned_cols=58 Identities=9% Similarity=0.035 Sum_probs=34.1
Q ss_pred CCCCEEecCCCCCCCc-----ccccCCCCCCcEEECCCCCCe--------ecchhhccCCCCCEEeecCCC
Q 039311 582 TSLTYLRLTDCGIIEL-----PECLGQLSSRSILLLEKNNFE--------RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~l-----p~~l~~l~~L~~L~L~~n~l~--------~lp~~i~~l~~L~~L~L~~c~ 639 (909)
++|+.|+|++|.+.+. ...+..+++|+.|+|++|.+. .++..+..+++|+.|++++|+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3566666666666542 233456666777777766522 333445566667777777664
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-14 Score=148.01 Aligned_cols=123 Identities=23% Similarity=0.254 Sum_probs=93.1
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
..+.++++++.++.+|..+. .+|+.|++++|.+..++. .+..+++|++|+|++|.+....|. +..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 46778888888999988776 588999999999888764 578889999999999887666665 788888888888887
Q ss_pred cccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCC
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGC 465 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c 465 (909)
......+..++.+++|++|++++| .++.++... ++++|+.|++++|
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC
Confidence 765544556778888888888885 455555532 3666666666664
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=167.20 Aligned_cols=189 Identities=19% Similarity=0.214 Sum_probs=145.3
Q ss_pred CCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEec
Q 039311 313 KLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINL 392 (909)
Q Consensus 313 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L 392 (909)
+|+.|++.+|.+.+.+ ..+ .++|++|++++|.++.+| -.+.+|++|++++|.+..+|. +.. +|++|+|
T Consensus 60 ~L~~L~Ls~n~L~~lp------~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLP------DNL-PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCC------SCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccC------HhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 7888888877654322 212 367899999999988888 346789999999999988887 655 8999999
Q ss_pred CCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC
Q 039311 393 SHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP 472 (909)
Q Consensus 393 s~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp 472 (909)
++|.+.. +|. .+++|++|++++|... .+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|. +..+|
T Consensus 128 s~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~-~~L~~L~Ls~N~-L~~lp 196 (571)
T 3cvr_A 128 DNNQLTM-LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPE-LP-ESLEALDVSTNL-LESLP 196 (571)
T ss_dssp CSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC-CC-TTCCEEECCSSC-CSSCC
T ss_pred CCCcCCC-CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcch-hh-CCCCEEECcCCC-CCchh
Confidence 9887655 666 6888999999987654 4665 57889999999864 666777 55 889999999874 44777
Q ss_pred ccccCc-------ceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCC
Q 039311 473 ELSCNI-------EELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKS 524 (909)
Q Consensus 473 ~~~~~L-------~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~ 524 (909)
....+| +.|+|++|.|+.+|..+..+++|+.|+|++|...+.+|..++.+..
T Consensus 197 ~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 197 AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 644567 8999999999999998888999999999999888878877665543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.9e-14 Score=163.95 Aligned_cols=171 Identities=20% Similarity=0.273 Sum_probs=114.9
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
+|+.|+++++.++.+|..+. .+|++|++++|.|+.+| ..+++|++|++++|.+.. +|.+.. +|++|++++|..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP-PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC
Confidence 78899999999988888764 78999999999998888 457889999999887655 665544 888888888764
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
.. +|. .+++|++|++++|. ++.+|. .+++|+.|++++|.. ..+|....+|+.|+|++|.|+.+|. +.. +
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L-~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~ 201 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQL-TFLPELPESLEALDVSTNLLESLPA-VPV--R 201 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCC-CC----
T ss_pred CC-CCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCC-CCcchhhCCCCEEECcCCCCCchhh-HHH--h
Confidence 43 665 57778888887754 555665 566777777777543 3355433556666666666666665 433 4
Q ss_pred C-------CEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 501 L-------ILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 501 L-------~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
| +.|+|++|.. ..+|..+..+++|+.|++
T Consensus 202 L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRI-THIPENILSLDPTCTIIL 237 (571)
T ss_dssp ------CCEEEECCSSCC-CCCCGGGGGSCTTEEEEC
T ss_pred hhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEe
Confidence 4 6666666532 345555555555555554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=144.35 Aligned_cols=170 Identities=22% Similarity=0.278 Sum_probs=107.0
Q ss_pred CcEEEccCCCCCcccCc-cccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccc
Q 039311 457 LKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEAL 534 (909)
Q Consensus 457 L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l 534 (909)
.+.++++++ .+..+|. ...+++.|++++|.+..++. .+.++++|++|+|++|......|..+..+++|+.|++
T Consensus 16 ~~~l~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L---- 90 (251)
T 3m19_A 16 KKEVDCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL---- 90 (251)
T ss_dssp GTEEECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC----
T ss_pred CeEEecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC----
Confidence 344444442 2333433 23456666666677765544 4777788888888887666555556677777777766
Q ss_pred ccccccCcceeecCc-cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEEC
Q 039311 535 KELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLL 612 (909)
Q Consensus 535 ~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L 612 (909)
+++.+..+|. .+..+++|+.|++++|. +.......+..+++|+.|+|++|.+..+|. .++.+++|+.|+|
T Consensus 91 -----~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 91 -----ANNQLASLPLGVFDHLTQLDKLYLGGNQ---LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp -----TTSCCCCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -----CCCcccccChhHhcccCCCCEEEcCCCc---CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEEC
Confidence 3445555553 35667777777777632 222222224567777777777777777655 5677777777777
Q ss_pred CCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 613 EKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 613 ~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
++|+++.+|. .+..+++|+.|+|++|+
T Consensus 163 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 163 STNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 7777776654 56677777777777764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=158.11 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=98.8
Q ss_pred ccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee---c--CccccccCCCCeeecCccccccc
Q 039311 496 ERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE---V--PSSIACLKNLGRLSFESFMCHEQ 570 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~---l--p~~i~~l~~L~~L~l~~~~~~~~ 570 (909)
..+++|++|++++|......|..++.+++|+.|+++.| .+.. + +..++.+++|++|++++|.....
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N---------~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN---------PGLGERGLMAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC---------TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC---------CCccchhhhHHHhhhcCCCCCEEECCCCCCCch
Confidence 35666666666666555555555666666666666332 2111 2 12235667777777776332211
Q ss_pred cccccCc-cCCCCCCCEEecCCCCCCCc-ccccCCC---CCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 571 MGLLLPI-SFGLTSLTYLRLTDCGIIEL-PECLGQL---SSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 571 ~~~~~~~-~~~l~~L~~L~Ls~~~l~~l-p~~l~~l---~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
.. .... +..+++|++|+|++|.+... |..+..+ ++|+.|+|++|+++.+|..+. ++|+.|+|++|+ ++.+|
T Consensus 213 ~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~ 288 (310)
T 4glp_A 213 TG-VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAP 288 (310)
T ss_dssp HH-HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCC
T ss_pred HH-HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCc
Confidence 11 1111 34578999999999999975 7777666 799999999999999998774 899999999974 55554
Q ss_pred --CCCCCcCceecccC
Q 039311 646 --ELPCDLSDIEAHCC 659 (909)
Q Consensus 646 --~l~~sL~~L~i~~C 659 (909)
..+++|+.|++.+.
T Consensus 289 ~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 289 QPDELPEVDNLTLDGN 304 (310)
T ss_dssp CTTSCCCCSCEECSST
T ss_pred hhhhCCCccEEECcCC
Confidence 34557777777664
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-15 Score=168.77 Aligned_cols=253 Identities=16% Similarity=0.134 Sum_probs=124.2
Q ss_pred EEeeCCCCCccCCCC--CCCCeeEEEcCCCCccccc-----cccccCC-CCCEEecCCCcCCCcCCC-CCcc-----ccc
Q 039311 345 LQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLW-----KGVQRLV-NLKHINLSHSEHLTKIPD-LSLA-----TNL 410 (909)
Q Consensus 345 L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp-----~~~~~L~-~L~~L~Ls~~~~l~~~p~-l~~l-----~~L 410 (909)
++++.+.+....+.+ ...+|++|++++|.+...+ ..+..++ +|++|+|++|.+....+. +..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 344555544332222 2344777777777666554 4455666 677777777655444332 3332 666
Q ss_pred cccccccccccceeccccc----CC-CcccEeccccccCccccCccc------c-CCcCcEEEccCCCCCcccCccccCc
Q 039311 411 ESLNFQGCTCLLETHSSIQ----YL-NKLVVLNLKHCRSLTSLSTSI------H-LGSLKKLILSGCSNLMSFPELSCNI 478 (909)
Q Consensus 411 ~~L~L~~c~~l~~~p~~i~----~L-~~L~~L~L~~c~~l~~lp~~~------~-l~~L~~L~Ls~c~~l~~lp~~~~~L 478 (909)
++|++++|......+..+. .+ ++|++|++++|. ++..+... . .++|++|++++|.....-+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------ 155 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------ 155 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence 6666666655444443332 23 566666666654 33332211 1 2355555555543221100
Q ss_pred ceeeccccCccccCcccccCC-CCCEEeccCCCCCCcCccc----ccCC-CCCCeeecccccccccccCcceeecCcccc
Q 039311 479 EELSLDGTAIQEFPSSIERLS-SLILLNLGNCLRLEGLPSK----ICKL-KSLERLNLAEALKELKAEGIAIREVPSSIA 552 (909)
Q Consensus 479 ~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~c~~l~~lp~~----l~~L-~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~ 552 (909)
..++..+..++ +|++|+|++|......+.. +..+ ++|+.|+++.|- +.......++..+.
T Consensus 156 ----------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 156 ----------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIFS 221 (362)
T ss_dssp ----------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHH
T ss_pred ----------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHHh
Confidence 02333333333 5555555555433333222 2223 245555443220 01111112444444
Q ss_pred cc-CCCCeeecCccccccccccccC-ccCCCCCCCEEecCCCCCC--------CcccccCCCCCCcEEECCCCCCe
Q 039311 553 CL-KNLGRLSFESFMCHEQMGLLLP-ISFGLTSLTYLRLTDCGII--------ELPECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 553 ~l-~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~~l~--------~lp~~l~~l~~L~~L~L~~n~l~ 618 (909)
.+ ++|+.|++++|.........+. .+..+++|+.|+|++|.+. .++..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 42 4677777766332221111111 1345677888888877633 24456677788888888888776
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=152.56 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSE 396 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~ 396 (909)
.+|++|+++++.++.+|....+.+|++|++++|.+..++. +..+++|++|++++|.
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 3445555555554444432244444444444444444443 4444444444444443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=146.04 Aligned_cols=134 Identities=25% Similarity=0.299 Sum_probs=88.4
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcc
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESF 565 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 565 (909)
|.+..++. +..+++|+.|++++|.. ..+|. ++.+++|+.|++ ++|.+..+ ..+..+++|+.|++++|
T Consensus 78 n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~L---------~~n~i~~~-~~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 78 NKLTDIKP-LANLKNLGWLFLDENKV-KDLSS-LKDLKKLKSLSL---------EHNGISDI-NGLVHLPQLESLYLGNN 144 (291)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG-GTTCTTCCEEEC---------TTSCCCCC-GGGGGCTTCCEEECCSS
T ss_pred CccCCCcc-cccCCCCCEEECCCCcC-CCChh-hccCCCCCEEEC---------CCCcCCCC-hhhcCCCCCCEEEccCC
Confidence 33344433 55555555555555532 22332 555555555554 23333333 23566677777777763
Q ss_pred ccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 566 MCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.... ++.+..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 145 ~l~~-----~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 145 KITD-----ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCC-----CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred cCCc-----chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 3222 2456678889999999999888776 8889999999999999998874 8889999999999874
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=139.71 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=90.2
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCC-CCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP-DLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 417 (909)
+.+|++|+++++.+..+|....+.+|++|++++|.+..++ .+..+++|++|++++|.+....| .++.+++|++|++++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 3456666666666666663335566677777666665553 46667777777777766554333 466677777777777
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCccccc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIER 497 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~ 497 (909)
|......+..++.+++|++|++++|..++.+|...++++|+.|++++ |.+..++ .+..
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~---------------------n~i~~~~-~l~~ 179 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF---------------------DGVHDYR-GIED 179 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTT---------------------BCCCCCT-TGGG
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCC---------------------CCCcChH-Hhcc
Confidence 66655556666667777777777665455555433455555555554 3344444 4556
Q ss_pred CCCCCEEeccCCC
Q 039311 498 LSSLILLNLGNCL 510 (909)
Q Consensus 498 l~~L~~L~L~~c~ 510 (909)
+++|+.|++++|.
T Consensus 180 l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 180 FPKLNQLYAFSQT 192 (197)
T ss_dssp CSSCCEEEECBC-
T ss_pred CCCCCEEEeeCcc
Confidence 6666666666654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.46 E-value=5.2e-14 Score=166.24 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
.+|+.|+++++.+..+|....+.+|+.|+|++|.+..++. +..+++|+.|+|++|.+ ..+|.+..+++|++|+|++
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecC
Confidence 3444444444444444432234444444444444444433 34444444444444432 2233333334444444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-15 Score=176.18 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=106.5
Q ss_pred CccccccccccccccccceecccccCCCcccEecccccc-------------CccccCccc-cCCcCcEEE-ccCCCCCc
Q 039311 405 SLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR-------------SLTSLSTSI-HLGSLKKLI-LSGCSNLM 469 (909)
Q Consensus 405 ~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~-------------~l~~lp~~~-~l~~L~~L~-Ls~c~~l~ 469 (909)
..+++|+.|+|++|. +..+|.+|+.+++|+.|++++|. .....|..+ ++++|+.|+ ++.+ .
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~-- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-Y-- 421 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-H--
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-c--
Confidence 344555555555543 33555555555555555554432 112222222 244455444 2221 1
Q ss_pred ccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 470 SFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 470 ~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
+.+|+.+.+.+|.+..+|.. .|+.|+|++|. +..+|. ++.+++|+.|++ ++|.+..+|.
T Consensus 422 -----~~~L~~l~l~~n~i~~l~~~-----~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~L---------s~N~l~~lp~ 480 (567)
T 1dce_A 422 -----LDDLRSKFLLENSVLKMEYA-----DVRVLHLAHKD-LTVLCH-LEQLLLVTHLDL---------SHNRLRALPP 480 (567)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHT-----TCSEEECTTSC-CSSCCC-GGGGTTCCEEEC---------CSSCCCCCCG
T ss_pred -----cchhhhhhhhcccccccCcc-----CceEEEecCCC-CCCCcC-ccccccCcEeec---------Ccccccccch
Confidence 11233334444444444321 35666666653 333554 555555555554 3344555666
Q ss_pred cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc--ccccCCCCCCcEEECCCCCCeecchhh---
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL--PECLGQLSSRSILLLEKNNFERIPESI--- 624 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~~i--- 624 (909)
.++.+++|+.|++++|... + +|.+..+++|+.|+|++|.+..+ |..++.+++|+.|+|++|.++.+|..+
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~---~--lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l 555 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALE---N--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555 (567)
T ss_dssp GGGGCTTCCEEECCSSCCC---C--CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred hhhcCCCCCEEECCCCCCC---C--CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH
Confidence 6666666666666653222 1 23556677777777777777765 677777777777777777777665432
Q ss_pred -ccCCCCCEEee
Q 039311 625 -IQLSHLFSLGI 635 (909)
Q Consensus 625 -~~l~~L~~L~L 635 (909)
..+|+|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 33677776653
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=160.19 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=81.2
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCC
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNL 387 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L 387 (909)
..+.+|+.|++.++.+... ..+. +++|+.|++++|.+..+|....+.+|+.|+|++|.+..++ .+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-------~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-------TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred hcCCCCCEEECcCCCCCCC-------hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 4556666666665543221 1233 5667777777776666665336666777777777666655 46666777
Q ss_pred CEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccC
Q 039311 388 KHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 388 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
+.|+|++|.+. .++.+..+++|+.|+|++|.... + ..++.+++|+.|+|++|. +..++....+++|+.|+|++
T Consensus 112 ~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 112 KSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSK 184 (605)
T ss_dssp CEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCS
T ss_pred CEEEecCCCCC-CCccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcC
Confidence 77777766543 34556666666666666654332 2 345556666666665543 33333322344444444444
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-13 Score=134.68 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=103.4
Q ss_pred CcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee-cCccccccC
Q 039311 477 NIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE-VPSSIACLK 555 (909)
Q Consensus 477 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i~~l~ 555 (909)
+|+.|++++|.+..+| .+..+++|++|++++| ....++ .+..+++|+.|++. ++.+.. .+..+..++
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~---------~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIM---------GKDVTSDKIPNLSGLT 112 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEE---------CTTCBGGGSCCCTTCT
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeE---------CCccCcccChhhcCCC
Confidence 4555555556666676 5778888888888887 334443 57777777777763 344443 456677778
Q ss_pred CCCeeecCccccccccccccCccCCCCCCCEEecCCCC-CCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEe
Q 039311 556 NLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCG-IIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLG 634 (909)
Q Consensus 556 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 634 (909)
+|+.|++++| .+.+..+..+..+++|+.|++++|. +.++| .+..+++|+.|++++|.++.++ .+..+++|+.|+
T Consensus 113 ~L~~L~Ls~n---~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHS---AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSS---BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred CCCEEEecCC---ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence 8888888763 2333334456678888888888887 66776 6788888888888888888877 778888888888
Q ss_pred ecCCC
Q 039311 635 ISHCE 639 (909)
Q Consensus 635 L~~c~ 639 (909)
+++++
T Consensus 188 l~~N~ 192 (197)
T 4ezg_A 188 AFSQT 192 (197)
T ss_dssp ECBC-
T ss_pred eeCcc
Confidence 88864
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=133.63 Aligned_cols=156 Identities=21% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLN 414 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 414 (909)
+.+|++|+++++.++.+|... .+.+|++|++++|.++.++.. +..+++|++|++++|.+....+. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 346677777777776666543 566777777777777766644 45677777777777765544443 56677777777
Q ss_pred cccccccceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcc-cc
Q 039311 415 FQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQ-EF 491 (909)
Q Consensus 415 L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~-~l 491 (909)
+++|......+..++.+++|++|++++|. ++.++.. + .+++|+.|++++|...... .+++.|++..|.+. .+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCCCT----TTTHHHHHHHHHCTTTB
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeecCC----CCHHHHHHHHHhCCcee
Confidence 77765443333345667777777777753 4444443 2 4667777777665433222 23445555554444 44
Q ss_pred CcccccCC
Q 039311 492 PSSIERLS 499 (909)
Q Consensus 492 p~~i~~l~ 499 (909)
|.+++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 54444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-15 Score=176.52 Aligned_cols=214 Identities=19% Similarity=0.208 Sum_probs=128.3
Q ss_pred CCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEec-c
Q 039311 361 PENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLN-L 439 (909)
Q Consensus 361 ~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~-L 439 (909)
.++|+.|+|++|.++.+|.+++++++|+.|+++++..+...| . .+..+......|..++.+++|+.|+ +
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---------~-ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---------L-LMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---------H-HHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---------H-HHHhcccccCCHHHHHHHHhcccCcch
Confidence 445556666666666666666666666666654432111111 0 0011123445667778888888887 4
Q ss_pred ccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccc
Q 039311 440 KHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 440 ~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+. ..+.. |+.+.++++. +..+|. ..|+.|++++|.++.+|. ++.+++|+.|+|++|... .+|..+
T Consensus 418 ~~-n~~~~---------L~~l~l~~n~-i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~ 482 (567)
T 1dce_A 418 RA-AYLDD---------LRSKFLLENS-VLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPAL 482 (567)
T ss_dssp GH-HHHHH---------HHHHHHHHHH-HHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGG
T ss_pred hh-cccch---------hhhhhhhccc-ccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhh
Confidence 44 22222 2222222211 111111 135666677777777776 777888888888877544 777777
Q ss_pred cCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccc-cCccCCCCCCCEEecCCCCCCCcc
Q 039311 520 CKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLL-LPISFGLTSLTYLRLTDCGIIELP 598 (909)
Q Consensus 520 ~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~~~l~~lp 598 (909)
+.+++|+.|++ ++|.++.+| .++.+++|+.|++++| .+.+.. +..+..+++|+.|+|++|.+..+|
T Consensus 483 ~~l~~L~~L~L---------s~N~l~~lp-~l~~l~~L~~L~Ls~N---~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 483 AALRCLEVLQA---------SDNALENVD-GVANLPRLQELLLCNN---RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGCTTCCEEEC---------CSSCCCCCG-GGTTCSSCCEEECCSS---CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hcCCCCCEEEC---------CCCCCCCCc-ccCCCCCCcEEECCCC---CCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 77777777776 455666676 6778888888888773 333333 445677888888888888888766
Q ss_pred ccc----CCCCCCcEEEC
Q 039311 599 ECL----GQLSSRSILLL 612 (909)
Q Consensus 599 ~~l----~~l~~L~~L~L 612 (909)
... ..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 543 33788888864
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=132.86 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=103.6
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++..++.+..+|..+. .+|++|++++|.+..++.. +..+++|++|++++|.+....+. +..+++|++|++++|..
T Consensus 10 ~~v~c~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCC-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 456777788888887663 5899999999999988765 57899999999999876654444 67888999999988765
Q ss_pred cceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcc-ccc
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS-IER 497 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~-i~~ 497 (909)
....+..++.+++|++|++++|. ++.++... ++++|+.|++++| .+..+|.. +..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N---------------------~l~~~~~~~~~~ 146 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN---------------------QLKSVPDGVFDR 146 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS---------------------CCSCCCTTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC---------------------ccceeCHHHhcc
Confidence 54444456788888888888854 55555432 4666666666664 44444443 566
Q ss_pred CCCCCEEeccCCCC
Q 039311 498 LSSLILLNLGNCLR 511 (909)
Q Consensus 498 l~~L~~L~L~~c~~ 511 (909)
+++|+.|++++|..
T Consensus 147 l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 147 LTSLQYIWLHDNPW 160 (208)
T ss_dssp CTTCCEEECCSCCB
T ss_pred CCCccEEEecCCCe
Confidence 67777777777643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=132.37 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=98.3
Q ss_pred cceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCcc-ccccCC
Q 039311 478 IEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSS-IACLKN 556 (909)
Q Consensus 478 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~-i~~l~~ 556 (909)
.+.++.+++.+..+|..+. ++|+.|+|++|......|..+..+++|+.|++ ++|.+..+|.. +..+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L---------~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYL---------GSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC---------CSSCCCCCCTTTTTTCTT
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEEC---------CCCCCCCcChhhcccCCC
Confidence 3455666666666666543 66777777777665555666666666666665 34455555543 466667
Q ss_pred CCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEee
Q 039311 557 LGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGI 635 (909)
Q Consensus 557 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L 635 (909)
|+.|++++|. +.......+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|
T Consensus 90 L~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 90 LTVLDLGTNQ---LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCEEECCCCc---CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 7777776632 22222222556788888888888888888888888888888888888887764 4677788888888
Q ss_pred cCCC
Q 039311 636 SHCE 639 (909)
Q Consensus 636 ~~c~ 639 (909)
++|+
T Consensus 167 ~~N~ 170 (229)
T 3e6j_A 167 FGNP 170 (229)
T ss_dssp TTSC
T ss_pred eCCC
Confidence 8765
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=137.96 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEe
Q 039311 555 KNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLG 634 (909)
Q Consensus 555 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~ 634 (909)
++|+.|++++|.... ++.+..+++|+.|++++|.+.+++ .+..+++|+.|++++|+++.+ ..+..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~-----~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-----TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp SSCCEEECCSSCCSB-----SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred CcccEEEccCCccCC-----ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 556666666532221 234566778888888888887775 577788888888888888877 5677788888888
Q ss_pred ecCCC
Q 039311 635 ISHCE 639 (909)
Q Consensus 635 L~~c~ 639 (909)
+++|+
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 88764
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-12 Score=129.92 Aligned_cols=146 Identities=21% Similarity=0.242 Sum_probs=95.0
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc--ccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK--GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~--~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
+.++++++.++.+|..+ ...+++|++++|.++.++. .+..+++|++|+|++|.+....+. +..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 46778888888888765 3456788888888887742 367788888888888876655553 7777777777777776
Q ss_pred ccceecccccCCCcccEeccccccCcccc-Cccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcccc-Ccccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSL-STSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEF-PSSIE 496 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~l-p~~i~ 496 (909)
.....+..++.+++|++|+|++|. ++.+ |..+ ++++|+.|++++ |.++.+ |..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~ 150 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD---------------------NQITTVAPGAFD 150 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTT---------------------SCCCCBCTTTTT
T ss_pred cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCC---------------------CcCCEECHHHhc
Confidence 555445556777777777777754 3333 3222 344444444444 444444 45566
Q ss_pred cCCCCCEEeccCCCC
Q 039311 497 RLSSLILLNLGNCLR 511 (909)
Q Consensus 497 ~l~~L~~L~L~~c~~ 511 (909)
.+++|+.|++++|..
T Consensus 151 ~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 151 TLHSLSTLNLLANPF 165 (220)
T ss_dssp TCTTCCEEECCSCCE
T ss_pred CCCCCCEEEecCcCC
Confidence 677777777777644
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=129.46 Aligned_cols=144 Identities=20% Similarity=0.295 Sum_probs=84.0
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++++++.++.+|..+. .+|+.|++++|.|..++. .+..+++|++|+|++|.+....|+ +..+++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 456677777777776654 577777777777777764 566677777777777766555443 66666666666666543
Q ss_pred cceecc-cccCCCcccEeccccccCccccC-ccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccc
Q 039311 421 LLETHS-SIQYLNKLVVLNLKHCRSLTSLS-TSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIE 496 (909)
Q Consensus 421 l~~~p~-~i~~L~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~ 496 (909)
. .+|. .+..+++|++|+|++|. ++.++ ..+ ++++|+.|++ ++|.+..++. .+.
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L---------------------~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSL---------------------YDNKLQTIAKGTFS 149 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC---------------------CSSCCSCCCTTTTT
T ss_pred C-ccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEEC---------------------CCCcCCEECHHHHh
Confidence 3 3332 34555666666665543 33322 222 2344444433 3344444443 355
Q ss_pred cCCCCCEEeccCCC
Q 039311 497 RLSSLILLNLGNCL 510 (909)
Q Consensus 497 ~l~~L~~L~L~~c~ 510 (909)
.+++|+.|+|++|.
T Consensus 150 ~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 150 PLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEEeCCCC
Confidence 66666666666664
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.6e-12 Score=128.06 Aligned_cols=145 Identities=26% Similarity=0.326 Sum_probs=80.9
Q ss_pred EEEccCCCCCcccCc-cccCcceeeccccCccccCc-ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccccc
Q 039311 459 KLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPS-SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKE 536 (909)
Q Consensus 459 ~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~ 536 (909)
.++++++ .+..+|. ...+++.|++++|.+..+|. .+..+++|+.|+|++|......|..+..+++|+.|++
T Consensus 15 ~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L------ 87 (220)
T 2v9t_B 15 IVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL------ 87 (220)
T ss_dssp EEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC------
T ss_pred EEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC------
Confidence 4455442 3444443 23355666666666655544 4555556666666555444333444444444444444
Q ss_pred ccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCC
Q 039311 537 LKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKN 615 (909)
Q Consensus 537 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n 615 (909)
++|.+..+|. ..+.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|
T Consensus 88 ---s~N~l~~l~~--------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 88 ---YGNKITELPK--------------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp ---CSSCCCCCCT--------------------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ---CCCcCCccCH--------------------------hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 2222222222 1244566777777777777764 456677777777777777
Q ss_pred CCeecch-hhccCCCCCEEeecCCC
Q 039311 616 NFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 616 ~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
+++.++. .+..+++|+.|+|++|+
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 139 KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 7776654 36667777777777764
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.5e-12 Score=138.99 Aligned_cols=167 Identities=19% Similarity=0.159 Sum_probs=86.8
Q ss_pred EEEccCCCCCcccCc-cccCcceeeccccCccccCcc-cc-cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccc
Q 039311 459 KLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSS-IE-RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALK 535 (909)
Q Consensus 459 ~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~ 535 (909)
.+++++ ..+..+|. ....++.|+|++|.+..++.. +. .+++|+.|+|++|......+..+..+++|+.|++
T Consensus 22 ~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L----- 95 (361)
T 2xot_A 22 ILSCSK-QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL----- 95 (361)
T ss_dssp EEECCS-SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC-----
T ss_pred EEEeCC-CCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC-----
Confidence 444444 23344443 233466666777777766554 33 6777777777777554444455666666666665
Q ss_pred cccccCcceeecCc-cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccccc----CCCCCCcEE
Q 039311 536 ELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECL----GQLSSRSIL 610 (909)
Q Consensus 536 ~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l----~~l~~L~~L 610 (909)
++|.+..++. .+..+++|+.|++++|. +.......+..+++|+.|+|++|.+..+|..+ ..+++|+.|
T Consensus 96 ----s~N~l~~~~~~~~~~l~~L~~L~L~~N~---i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 96 ----SSNHLHTLDEFLFSDLQALEVLLLYNNH---IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp ----CSSCCCEECTTTTTTCTTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE
T ss_pred ----CCCcCCcCCHHHhCCCcCCCEEECCCCc---ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE
Confidence 3344444443 34555555555555522 22222223444555566666666555555443 345555566
Q ss_pred ECCCCCCeecch-hhccCCC--CCEEeecCC
Q 039311 611 LLEKNNFERIPE-SIIQLSH--LFSLGISHC 638 (909)
Q Consensus 611 ~L~~n~l~~lp~-~i~~l~~--L~~L~L~~c 638 (909)
+|++|+++.+|. .+..++. |+.|+|++|
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 666555555542 3344443 244444443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=141.17 Aligned_cols=146 Identities=23% Similarity=0.322 Sum_probs=91.6
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cc-cCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQ-RLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~-~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
+.++++++.++.+|..+. ..++.|+|++|.|..++.. +. .+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 567778888888887653 4578888888888877755 33 778888888888776555554 7777777777777766
Q ss_pred ccceecccccCCCcccEeccccccCcccc-Cccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCccc--
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSL-STSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSI-- 495 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i-- 495 (909)
.....+..+..+++|++|+|++|. +..+ |..+ ++++|+.|+|++ |.+..+|..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~l~~~~~~ 157 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQ---------------------NQISRFPVELIK 157 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS---------------------SCCCSCCGGGTC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCC---------------------CcCCeeCHHHhc
Confidence 443334456677777777777654 3333 2222 345555554444 4444455443
Q ss_pred --ccCCCCCEEeccCCCC
Q 039311 496 --ERLSSLILLNLGNCLR 511 (909)
Q Consensus 496 --~~l~~L~~L~L~~c~~ 511 (909)
..+++|+.|+|++|..
T Consensus 158 ~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp ----CTTCCEEECCSSCC
T ss_pred CcccCCcCCEEECCCCCC
Confidence 4566666666666643
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=128.44 Aligned_cols=148 Identities=22% Similarity=0.192 Sum_probs=92.9
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
-+.++.+++.+..+|..+. .+|++|+|++|.+..+ |..+..+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3456777777778877664 6788888888888776 45567778888888887775433333 5677777777777765
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-cccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIER 497 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~ 497 (909)
.....+..+..+++|++|++++|. ++.+|..+ .+++|+.|++++ |.+..+|. .+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQ---------------------NQLKSIPHGAFDR 157 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCS---------------------SCCCCCCTTTTTT
T ss_pred CCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCC---------------------CcCCccCHHHHhC
Confidence 443333345666777777776643 44555444 345555554444 44444443 3566
Q ss_pred CCCCCEEeccCCCCC
Q 039311 498 LSSLILLNLGNCLRL 512 (909)
Q Consensus 498 l~~L~~L~L~~c~~l 512 (909)
+++|+.|++++|...
T Consensus 158 l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTCCEEECTTSCBC
T ss_pred CCCCCEEEeeCCCcc
Confidence 677777777776543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=127.48 Aligned_cols=146 Identities=20% Similarity=0.167 Sum_probs=79.2
Q ss_pred cEEEccCCCCCcccCcc-ccCcceeeccccCccccCc--ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccccc
Q 039311 458 KKLILSGCSNLMSFPEL-SCNIEELSLDGTAIQEFPS--SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEAL 534 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~-~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l 534 (909)
+.++++++. +..+|.. ...+++|++++|.+..++. .+..+++|+.|+|++|......+..+..++
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~----------- 81 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS----------- 81 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-----------
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-----------
Confidence 355555532 3444442 2345566666666665532 255566666666655543333333344444
Q ss_pred ccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECC
Q 039311 535 KELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLE 613 (909)
Q Consensus 535 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~ 613 (909)
+|+.|++++|. +.......+.++++|+.|+|++|.+..+ |..+..+++|+.|+|+
T Consensus 82 ---------------------~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 82 ---------------------GVNEILLTSNR---LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp ---------------------TCCEEECCSSC---CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred ---------------------CCCEEECCCCc---cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 44444444421 1111122244566667777777766654 4566667777777777
Q ss_pred CCCCeec-chhhccCCCCCEEeecCCC
Q 039311 614 KNNFERI-PESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 614 ~n~l~~l-p~~i~~l~~L~~L~L~~c~ 639 (909)
+|+++.+ |..+..+++|+.|+|++|+
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 7777755 5566667777777777653
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=137.75 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=20.7
Q ss_pred eeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 480 ELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 480 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
.|++++|.++.+| .++.+++|+.|++++|..... ..+..+++|+.|++
T Consensus 132 ~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 132 ILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDL 179 (263)
T ss_dssp EEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEE
T ss_pred EEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeC
Confidence 3333334444443 344555555555555433222 23444444444444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-12 Score=154.50 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=89.8
Q ss_pred EEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccc
Q 039311 345 LQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLL 422 (909)
Q Consensus 345 L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 422 (909)
+++..+.+...|..+ .+.+|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|. ++.+++|++|+|++|...
T Consensus 206 ~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 206 DDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 334444444444444 667777777777777777777777777777777777655 5554 777777777777777644
Q ss_pred eecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCc----ceeeccccCcc-ccCcccc
Q 039311 423 ETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNI----EELSLDGTAIQ-EFPSSIE 496 (909)
Q Consensus 423 ~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L----~~L~L~~~~i~-~lp~~i~ 496 (909)
.+|..++.|++|++|+|++| .++.+|..+ ++++|+.|+|++|...+.+|..+..+ ..|++++|.+. .+|.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--- 359 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--- 359 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---
T ss_pred ccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---
Confidence 67777777777777777775 456777666 47777777777777666666544321 13456666655 3333
Q ss_pred cCCCCCEEeccCC
Q 039311 497 RLSSLILLNLGNC 509 (909)
Q Consensus 497 ~l~~L~~L~L~~c 509 (909)
.|..|+++.|
T Consensus 360 ---~l~~l~l~~n 369 (727)
T 4b8c_D 360 ---ERRFIEINTD 369 (727)
T ss_dssp ---C---------
T ss_pred ---ccceeEeecc
Confidence 3444555554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.20 E-value=8e-11 Score=118.02 Aligned_cols=125 Identities=20% Similarity=0.229 Sum_probs=101.7
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc--cccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG--VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
++++++++.++.+|..+.. +|++|++++|.+..++.. +..+++|++|+|++|.+....|. +..+++|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 6788899999999987754 899999999999988864 88999999999999988777675 8899999999999987
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNL 468 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l 468 (909)
.....+..++.+++|++|++++|......|..+ .+++|+.|++++|...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 766666678899999999999975444445555 4888888888886544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=118.45 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=47.6
Q ss_pred CCeeEEEcCCCCcc--ccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEecc
Q 039311 362 ENLVSLEMPHSSIK--QLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439 (909)
Q Consensus 362 ~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L 439 (909)
.+|++|++++|.+. .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.....+|..++.+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45666666666665 5665566666666666666654333 45666666666666666544445555555666666666
Q ss_pred ccc
Q 039311 440 KHC 442 (909)
Q Consensus 440 ~~c 442 (909)
++|
T Consensus 103 s~N 105 (168)
T 2ell_A 103 SGN 105 (168)
T ss_dssp BSS
T ss_pred cCC
Confidence 654
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-11 Score=116.97 Aligned_cols=130 Identities=23% Similarity=0.216 Sum_probs=78.0
Q ss_pred CcceeeccccCcc--ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceee-cCccccc
Q 039311 477 NIEELSLDGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE-VPSSIAC 553 (909)
Q Consensus 477 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~-lp~~i~~ 553 (909)
+++.|++++|.+. .+|..+..+++|+.|++++|... .+ ..++.+++|+.|++. +|.+.. +|..
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls---------~N~l~~~~~~~--- 90 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS---------ENRIFGGLDML--- 90 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEE---------SCCCCSCCCHH---
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECc---------CCcCchHHHHH---
Confidence 4555555555555 66666666777777777776532 22 344555555555442 222222 2222
Q ss_pred cCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcc--cccCCCCCCcEEECCCCCCeecch----hhccC
Q 039311 554 LKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP--ECLGQLSSRSILLLEKNNFERIPE----SIIQL 627 (909)
Q Consensus 554 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~l 627 (909)
+..+++|+.|++++|.+..+| ..+..+++|+.|++++|.++.+|. .+..+
T Consensus 91 ------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 91 ------------------------AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp ------------------------HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred ------------------------HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 223566777777777777655 567777777777777777776665 66777
Q ss_pred CCCCEEeecCCCCCcccC
Q 039311 628 SHLFSLGISHCERLHSLP 645 (909)
Q Consensus 628 ~~L~~L~L~~c~~L~~lp 645 (909)
++|+.|++++|. +..+|
T Consensus 147 ~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 147 PQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp SSCCEETTEETT-SCBCC
T ss_pred ccCcEecCCCCC-hhhcc
Confidence 788888877764 34444
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=116.60 Aligned_cols=123 Identities=19% Similarity=0.182 Sum_probs=103.8
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCL 421 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l 421 (909)
++++++++.++.+|..+. .+|++|++++|.+..+|..+..+++|++|+|++|.+....+. |..+++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCCC-CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 578889999999998764 689999999999999999999999999999999987766665 899999999999998876
Q ss_pred ceecccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSN 467 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~ 467 (909)
...+..++.+++|++|+|++|. ++.+|.. + .+++|+.|++++|..
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 6666689999999999999964 6677664 3 588888888887643
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-11 Score=146.93 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=82.8
Q ss_pred eeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEecccccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~ 443 (909)
+..+++..+.+...+..+..+.+|+.|+|++|.+....+.+..+++|++|+|++|... .+|..++.|++|++|+|++|.
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3344555566666677788899999999999986643335778999999999998655 888889999999999999865
Q ss_pred CccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccc
Q 039311 444 SLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 444 ~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
++.+|..+ ++++|++|+|++| .+..+|..|+.+++|+.|+|++|...+.+|..+
T Consensus 282 -l~~lp~~~~~l~~L~~L~L~~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 282 -LTSLPAELGSCFQLKYFYFFDN---------------------MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp -CSSCCSSGGGGTTCSEEECCSS---------------------CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred -CCccChhhcCCCCCCEEECCCC---------------------CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66777766 4777777777764 344455555566666666666665554444433
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.1e-11 Score=113.48 Aligned_cols=124 Identities=22% Similarity=0.217 Sum_probs=72.9
Q ss_pred cCcceeeccccCcc--ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccc
Q 039311 476 CNIEELSLDGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIAC 553 (909)
Q Consensus 476 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~ 553 (909)
.+++.|++++|.+. .+|..++.+++|+.|++++|.... + ..++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l------------------------------- 63 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKL------------------------------- 63 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCC-------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcC-------------------------------
Confidence 45666666666665 566655666666666666653222 2 233333
Q ss_pred cCCCCeeecCccccccccccccCc-cCCCCCCCEEecCCCCCCCcc--cccCCCCCCcEEECCCCCCeecch----hhcc
Q 039311 554 LKNLGRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCGIIELP--ECLGQLSSRSILLLEKNNFERIPE----SIIQ 626 (909)
Q Consensus 554 l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~i~~ 626 (909)
++|+.|++++|. +.+. ++. +..+++|+.|++++|.+.+++ ..++.+++|+.|++++|.++.+|. .+..
T Consensus 64 -~~L~~L~Ls~n~---i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 64 -NKLKKLELSDNR---VSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138 (149)
T ss_dssp -TTCCEEECCSSC---CCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH
T ss_pred -CCCCEEECCCCc---ccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH
Confidence 444444444311 1111 122 223667777777777777654 677777888888888887776665 5677
Q ss_pred CCCCCEEeecC
Q 039311 627 LSHLFSLGISH 637 (909)
Q Consensus 627 l~~L~~L~L~~ 637 (909)
+++|+.|++++
T Consensus 139 l~~L~~L~l~d 149 (149)
T 2je0_A 139 LPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEETTBC
T ss_pred CCCcccccCCC
Confidence 78888877653
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7e-11 Score=113.06 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=36.2
Q ss_pred CeeEEEcCCCCcc--ccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIK--QLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
+|+.|++++|.+. .+|..+..+++|++|++++|.+... +.++.+++|++|++++|.....+|..++.+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 4444444444444 4444444555555555555543322 334444455555554444333344444444444444444
Q ss_pred c
Q 039311 441 H 441 (909)
Q Consensus 441 ~ 441 (909)
+
T Consensus 97 ~ 97 (149)
T 2je0_A 97 G 97 (149)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=114.61 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=69.0
Q ss_pred CCCccEEEeeCCCCCccCCCCCCC-CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPE-NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQ 416 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~-~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 416 (909)
+.+|+.|++++|.++.+|...... +|++|++++|.+..+ ..+..+++|++|++++|.+....+. +..+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 345555555556555555433333 666666666666655 4556666666666666654433333 3566666666666
Q ss_pred cccccceecc--cccCCCcccEeccccccCccccCcc----c-cCCcCcEEEccCC
Q 039311 417 GCTCLLETHS--SIQYLNKLVVLNLKHCRSLTSLSTS----I-HLGSLKKLILSGC 465 (909)
Q Consensus 417 ~c~~l~~~p~--~i~~L~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~Ls~c 465 (909)
+|.. ..+|. .++.+++|++|++++|. +..+|.. + .+++|+.|++++|
T Consensus 97 ~N~i-~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 97 NNSL-VELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SCCC-CCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCcC-CcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6543 34444 55666666666666643 3444442 2 3566666665554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.2e-10 Score=111.03 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=93.7
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccccc
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c 442 (909)
++++++++.++.+|..+.. +|++|++++|.+....+. ++.+++|++|++++|......|..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6899999999999987654 899999999987666654 788999999999998877666788888888999988886
Q ss_pred cCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCcccc-CcccccCCCCCEEeccCCCCCCc
Q 039311 443 RSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEF-PSSIERLSSLILLNLGNCLRLEG 514 (909)
Q Consensus 443 ~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~l~~ 514 (909)
. ++.++.. + ++++|++|++++ |.+..+ |..+..+++|++|++++|.....
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~---------------------N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYD---------------------NQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCS---------------------SCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred c-CCccCHHHhcCCCCCCEEECCC---------------------CcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 4 4444432 3 466666666555 444433 55677778888888888765443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-09 Score=108.28 Aligned_cols=62 Identities=27% Similarity=0.290 Sum_probs=43.7
Q ss_pred cCCCCCCCEEecCCCCCCCccc-ccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 578 SFGLTSLTYLRLTDCGIIELPE-CLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+.++++|+.|+|++|.+..++. .+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 4556777777777777776543 567777777777777777777653 5667777777777764
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.7e-10 Score=110.03 Aligned_cols=60 Identities=25% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCCCCCCEEecCCCCCCCccc--ccCCCCCCcEEECCCCCCeecchh----hccCCCCCEEeecCC
Q 039311 579 FGLTSLTYLRLTDCGIIELPE--CLGQLSSRSILLLEKNNFERIPES----IIQLSHLFSLGISHC 638 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~lp~~----i~~l~~L~~L~L~~c 638 (909)
..+++|+.|++++|.+.++|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 345566666666666666555 566666666666666666666653 566666666666655
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.4e-09 Score=107.25 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=95.2
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
.+.++++++.+..+|..+. .+|++|++++|.+..++.. +..+++|++|++++|.+....+. +..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4567788888888886554 6889999999988888754 57888999999998876654444 6888899999998876
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLM 469 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~ 469 (909)
.....+..++.+++|++|++++| .++.+|... .+++|+.|++++|....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 65444445788888999999886 466666643 47888888888865443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=116.53 Aligned_cols=252 Identities=12% Similarity=0.044 Sum_probs=123.2
Q ss_pred CCCccEEEeeCCCCC--ccCCCCCCCCeeEEEcCCCCccccc-ccccc--------CCCCCEEecCCCcCCCcCCC--CC
Q 039311 339 STELRYLQWHGCPLK--SLSSKIPPENLVSLEMPHSSIKQLW-KGVQR--------LVNLKHINLSHSEHLTKIPD--LS 405 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~--------L~~L~~L~Ls~~~~l~~~p~--l~ 405 (909)
+.+|+.|++++|.+. ..+... ...+..+.+..+ .+| ..+.. +++|+.|+|.+ . ++.+++ |.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccc-cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhh
Confidence 467888888887776 222211 111344444444 233 23445 78888888877 3 444553 77
Q ss_pred ccccccccccccccccceecccccCCCcccEecccccc---CccccCcc--ccCCcCc-EEEccCCCCCcccC----ccc
Q 039311 406 LATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR---SLTSLSTS--IHLGSLK-KLILSGCSNLMSFP----ELS 475 (909)
Q Consensus 406 ~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~---~l~~lp~~--~~l~~L~-~L~Ls~c~~l~~lp----~~~ 475 (909)
+|++|+.|++.++....-.+..+..+.++..+.+.... ....+... .++.+|+ .+.+.....+.... -..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 88888888888765544444556666666665554311 11111111 1233444 33333221111100 011
Q ss_pred cCcceeeccccCccccCccc-ccCCCCCEEeccCCCCCCcCcc-cccCCCCCCeeecccccccccccCcceeecCccccc
Q 039311 476 CNIEELSLDGTAIQEFPSSI-ERLSSLILLNLGNCLRLEGLPS-KICKLKSLERLNLAEALKELKAEGIAIREVPSSIAC 553 (909)
Q Consensus 476 ~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~ 553 (909)
.++..+.+.++-...-...+ ..+++|+.|+|.+|. +..+|. .+.++++|+.|
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l------------------------- 255 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKI------------------------- 255 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEE-------------------------
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEE-------------------------
Confidence 22333333332111000011 124555555555543 222222 24444444444
Q ss_pred cCCCCeeecCccccccccccccCccCCCCCCC-EEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCC
Q 039311 554 LKNLGRLSFESFMCHEQMGLLLPISFGLTSLT-YLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHL 630 (909)
Q Consensus 554 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L 630 (909)
.+.++ +.......+.++++|+ .|.+.+ ++..++ ..|.++++|+.|++.+|+++.++. .+.++++|
T Consensus 256 -------~l~~n----i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 256 -------KLPHN----LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp -------ECCTT----CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred -------ECCcc----cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 44331 2211222355566676 777766 555543 567778888888888888877765 56677777
Q ss_pred CEEe
Q 039311 631 FSLG 634 (909)
Q Consensus 631 ~~L~ 634 (909)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7765
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-09 Score=118.05 Aligned_cols=255 Identities=13% Similarity=0.153 Sum_probs=158.4
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC--C--------CCCeeEEEcCCCCcccccc-
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI--P--------PENLVSLEMPHSSIKQLWK- 379 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~--~--------~~~L~~L~L~~~~i~~lp~- 379 (909)
+++|+.|++++|.+... ....+ ....++++.+..+ .+|... . +.+|+.|++++ .++.++.
T Consensus 48 l~~L~~LdLs~n~i~~~----~~~~~-~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMY----SGKAG-TYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp CTTCCEEEEEEEEECCE----EESSS-SSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred hccCeEEecCcceeEEe----cCccc-ccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 78999999998865411 11111 1222455555555 566544 6 79999999999 9999985
Q ss_pred ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc---ccee-cccccCCCccc-EeccccccCccccC--cc
Q 039311 380 GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC---LLET-HSSIQYLNKLV-VLNLKHCRSLTSLS--TS 451 (909)
Q Consensus 380 ~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~---l~~~-p~~i~~L~~L~-~L~L~~c~~l~~lp--~~ 451 (909)
.+..+++|+.|+++++......+. |..+.++..+.+..... ...+ ...+..+..|+ .+.+.....+...- ..
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 478899999999999876654444 77777777776654211 0111 12233444555 44443322222111 11
Q ss_pred ccCCcCcEEEccCCCCCcc---cCccccCcceeeccccCccccCcc-cccCCCCCEEeccCCCCCCcCcc-cccCCCCCC
Q 039311 452 IHLGSLKKLILSGCSNLMS---FPELSCNIEELSLDGTAIQEFPSS-IERLSSLILLNLGNCLRLEGLPS-KICKLKSLE 526 (909)
Q Consensus 452 ~~l~~L~~L~Ls~c~~l~~---lp~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~ 526 (909)
....+++.+.+.+.-.... +.....+|+.|+|.+|.++.+|.. |.++++|+.|++.++ +..++. .+.++++|+
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCC
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhcc
Confidence 2467777787776422211 112356899999999999999876 889999999999986 555554 467777777
Q ss_pred -eeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCccc-ccCCC
Q 039311 527 -RLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE-CLGQL 604 (909)
Q Consensus 527 -~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-~l~~l 604 (909)
.+.+..+ +..++ ...+.++++|+.|+++++++..++. .|.++
T Consensus 277 ~~l~l~~~----------l~~I~--------------------------~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 277 GTLELPAS----------VTAIE--------------------------FGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp EEEEECTT----------CCEEC--------------------------TTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred EEEEEccc----------ceEEc--------------------------hhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 7776332 12221 1234456677777777777766543 66777
Q ss_pred CCCcEEEC
Q 039311 605 SSRSILLL 612 (909)
Q Consensus 605 ~~L~~L~L 612 (909)
++|+.+..
T Consensus 321 ~~L~~ly~ 328 (329)
T 3sb4_A 321 VPSKLIYK 328 (329)
T ss_dssp CCCCEEEC
T ss_pred cchhhhcc
Confidence 77777653
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.4e-09 Score=102.50 Aligned_cols=124 Identities=24% Similarity=0.312 Sum_probs=70.6
Q ss_pred ceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCC
Q 039311 479 EELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLG 558 (909)
Q Consensus 479 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~ 558 (909)
+.++++++.++.+|..+. ++|+.|++++|......+..++.+++|+.|++. ++.+..+|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~---------~n~l~~~~~--------- 69 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLS---------QNQIQSLPD--------- 69 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC---------SSCCCCCCT---------
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECC---------CCcceEeCh---------
Confidence 456666666666665443 567777777765433222334555555555442 222222222
Q ss_pred eeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCCCeecchhh-ccCCCCCEEeec
Q 039311 559 RLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESI-IQLSHLFSLGIS 636 (909)
Q Consensus 559 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~ 636 (909)
..+..+++|+.|++++|.+..+|.. +..+++|+.|++++|+++.+|..+ ..+++|+.|+++
T Consensus 70 -----------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 70 -----------------GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -----------------hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 1134456666666666666665443 466677777777777777666543 567777777777
Q ss_pred CCC
Q 039311 637 HCE 639 (909)
Q Consensus 637 ~c~ 639 (909)
+|+
T Consensus 133 ~N~ 135 (177)
T 2o6r_A 133 TNP 135 (177)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.4e-11 Score=121.44 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=67.6
Q ss_pred CccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccc
Q 039311 373 SIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI 452 (909)
Q Consensus 373 ~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~ 452 (909)
.++.+|..+..+++|++|++++|.+.. +|.+..+++|++|++++|.. ..+|..++.+++|++|++++| .++.+|...
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~ 112 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYN-QIASLSGIE 112 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEE-ECCCHHHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCC-cCCcCCccc
Confidence 455566666677777777777665433 55666666677777766543 355655566666666666665 344444322
Q ss_pred cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc--ccccCCCCCEEeccCCCCCC
Q 039311 453 HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS--SIERLSSLILLNLGNCLRLE 513 (909)
Q Consensus 453 ~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~l~ 513 (909)
.+++|+.|++++ |.+..+|. .+..+++|++|++++|....
T Consensus 113 ~l~~L~~L~l~~---------------------N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 113 KLVNLRVLYMSN---------------------NKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHSSEEEESE---------------------EECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCCCCEEECCC---------------------CcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 355555555544 44444332 45566666666666664433
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-11 Score=119.96 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=78.2
Q ss_pred CccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccc
Q 039311 487 AIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFM 566 (909)
Q Consensus 487 ~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~ 566 (909)
.++.+|..+..+++|+.|++++|... .+| .+..+++|+.|++ ++|.+..+|..+..+++|+.|++++|.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l---------~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSL---------GRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEE---------EEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEEC---------CCCCcccccchhhcCCcCCEEECcCCc
Confidence 34455667777777777777777433 355 5666666666666 334555666666666666666666532
Q ss_pred cccccccccCccCCCCCCCEEecCCCCCCCccc--ccCCCCCCcEEECCCCCCeec-ch----------hhccCCCCCEE
Q 039311 567 CHEQMGLLLPISFGLTSLTYLRLTDCGIIELPE--CLGQLSSRSILLLEKNNFERI-PE----------SIIQLSHLFSL 633 (909)
Q Consensus 567 ~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~--~l~~l~~L~~L~L~~n~l~~l-p~----------~i~~l~~L~~L 633 (909)
... ++.+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+... |. .+..+++|+.|
T Consensus 105 l~~-----l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 105 IAS-----LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp CCC-----HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCc-----CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 221 2234455666666666666665543 566666666666666666533 21 14556666655
Q ss_pred e
Q 039311 634 G 634 (909)
Q Consensus 634 ~ 634 (909)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.85 E-value=7.2e-09 Score=101.44 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=69.2
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
.+.++++++.++.+|..+. .+|++|+|++|.|+.++ ..+..+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4577778888888887664 67888888888888774 5577788888888888776554444 5677777777777765
Q ss_pred ccceecccccCCCcccEecccccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~ 443 (909)
.....+..++.+++|++|+|++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 443333346666666666666643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.8e-09 Score=100.85 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=69.1
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTC 420 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~ 420 (909)
+.++++++.+..+|..+. .+|++|+|++|.|..++ ..+..+++|++|+|++|.+....+. +..+++|++|+|++|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 567778888888887664 77888888888888774 5577788888888888765554444 56777777777777654
Q ss_pred cceecc-cccCCCcccEecccccc
Q 039311 421 LLETHS-SIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 421 l~~~p~-~i~~L~~L~~L~L~~c~ 443 (909)
. .+|. .++.+++|++|+|++|.
T Consensus 94 ~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 94 K-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp C-CCCTTTTTTCTTCSEEECCSSC
T ss_pred c-eeCHHHhccccCCCEEEeCCCC
Confidence 4 3443 36667777777776653
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-08 Score=96.37 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=67.8
Q ss_pred cccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCC
Q 039311 538 KAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNN 616 (909)
Q Consensus 538 ~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~ 616 (909)
+++++.++.+|..+. ++|+.|++++|. +.......+..+++|+.|+|++|.+..+|.. +..+++|+.|+|++|+
T Consensus 18 ~~~~n~l~~iP~~~~--~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 18 NCQNIRLASVPAGIP--TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp ECCSSCCSSCCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccCCCcC--CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555566666543 667777777632 2222233466778888888888888887765 4778888888888888
Q ss_pred Ceecchh-hccCCCCCEEeecCCC
Q 039311 617 FERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 617 l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
++.+|.. +..+++|+.|+|++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 8877765 7778888888888864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.71 E-value=5.6e-07 Score=100.65 Aligned_cols=231 Identities=9% Similarity=0.086 Sum_probs=106.6
Q ss_pred CeeEEEcCCCCccccccc-cccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEecc
Q 039311 363 NLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNL 439 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L 439 (909)
+|+.+.++.+ ++.++.. +.+ .+|+.+.+..+ ++.++. |.+|++|+.+++..+. +..++...-...+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence 5566665544 5555432 223 35666666542 333332 5666666666665532 3344443333456666666
Q ss_pred ccccCccccCccc--cCCcCcEEEccCCCCCcccCcc---ccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCC
Q 039311 440 KHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPEL---SCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLE 513 (909)
Q Consensus 440 ~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~ 513 (909)
.. .++.++... ++++|+.+.+..+ +..++.. ..+|+.+.+ .+.++.++ ..|.++++|+.+.+.++...
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~- 284 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFN- 284 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCC-
T ss_pred CC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcccc-
Confidence 53 245554433 4566666666542 2222211 123444444 23344443 23455566666655554221
Q ss_pred cCcccccCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCC
Q 039311 514 GLPSKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDC 592 (909)
Q Consensus 514 ~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~ 592 (909)
......++ ..+..+++|+.+.+.. ++.......+.++++|+.+.|..+
T Consensus 285 ---------------------------~~~~~~I~~~aF~~c~~L~~l~l~~----~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 285 ---------------------------DDPEAMIHPYCLEGCPKLARFEIPE----SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ---------------------------CCTTCEECTTTTTTCTTCCEECCCT----TCCEECTTTTTTCCSCCEEEECTT
T ss_pred ---------------------------CCcccEECHHHhhCCccCCeEEeCC----ceEEEhhhhhcCCCCccEEEECcc
Confidence 00011111 1234444444444432 111111223444566666666433
Q ss_pred CCCCc-ccccCCCCCCcEEECCCCCCeecch-hhccCC-CCCEEeecC
Q 039311 593 GIIEL-PECLGQLSSRSILLLEKNNFERIPE-SIIQLS-HLFSLGISH 637 (909)
Q Consensus 593 ~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~-~L~~L~L~~ 637 (909)
+..+ ..+|.++ +|+.+.+.+|....++. .+..++ .++.|++..
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 3333 2345556 67777777766655443 233442 456666554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-08 Score=94.78 Aligned_cols=98 Identities=22% Similarity=0.266 Sum_probs=66.9
Q ss_pred ccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCC
Q 039311 537 LKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKN 615 (909)
Q Consensus 537 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n 615 (909)
++++++.+..+|..+. ++|+.|++++| .+.......+.++++|+.|+|++|.+..+|.. +..+++|+.|+|++|
T Consensus 14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N---~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 14 VDCSGKSLASVPTGIP--TTTQVLYLYDN---QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSS---CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEeCCCCcCccCccCC--CCCcEEEcCCC---cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3345555566665442 66777777663 23322333466778888888888888876654 477888888888888
Q ss_pred CCeecchh-hccCCCCCEEeecCCC
Q 039311 616 NFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 616 ~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
+++.+|.. +..+++|+.|+|++|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88877764 6778888888888864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-06 Score=97.01 Aligned_cols=195 Identities=10% Similarity=0.129 Sum_probs=97.5
Q ss_pred CcccccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCC-C-CCCCeeEEEcCCCCcccccccc
Q 039311 304 NAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSK-I-PPENLVSLEMPHSSIKQLWKGV 381 (909)
Q Consensus 304 ~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~i~~lp~~~ 381 (909)
...+|.+. +|+.+.+.++ +. .+. ...+.-..|+.+.+.. .++.++.. | .+.+|+.+++++++++.++...
T Consensus 128 ~~~aF~~~-~L~~i~l~~~-i~----~I~-~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 128 PKDAFRNS-QIAKVVLNEG-LK----SIG-DMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CTTTTTTC-CCSEEECCTT-CC----EEC-TTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred hHhhcccC-CccEEEeCCC-cc----EEC-HHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 34566664 5666666533 11 110 1111223466666654 45555533 2 5566666666666666666554
Q ss_pred ccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccccccCccccCccc--cCCcC
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSL 457 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L 457 (909)
....+|+.+.+..+ ++.++. |.++++|+.+++..+ +..++...-.-.+|+.+.+.+ .++.++... ++++|
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPEL 273 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTC
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCC
Confidence 44566666666543 344443 666666666666542 333333222225566666632 344443332 35555
Q ss_pred cEEEccCCCCCcccCccccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcc-cccCCCCCCeeec
Q 039311 458 KKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPS-KICKLKSLERLNL 530 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~-~l~~L~~L~~L~l 530 (909)
+.+.+.++... .+.+..++ ..|.++++|+.+.|.++ +..++. .+.++++|+.+.+
T Consensus 274 ~~l~l~~~~~~----------------~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 274 AEVTTYGSTFN----------------DDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp CEEEEESSCCC----------------CCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEE
T ss_pred CEEEeCCcccc----------------CCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEE
Confidence 55555442211 01111333 33667777777777642 333332 3555566666655
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.6e-06 Score=94.19 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=54.2
Q ss_pred cCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcCcee
Q 039311 578 SFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLSDIE 655 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L~ 655 (909)
+.++.+|+.+.+.++ +..+ ..++.++.+|+.++|.. .++.++. .+.++.+|+.+.+... ++.|+.- -
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-------a 361 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-------A 361 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTT-------T
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHH-------H
Confidence 445667777777543 3333 34566777788777754 3666653 4566777777766542 4444431 1
Q ss_pred cccCcccccccCcchhccccCCCcceeEecccCCCC
Q 039311 656 AHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLD 691 (909)
Q Consensus 656 i~~C~~L~~l~~~~~l~~~~~~~~~~l~~~~C~~L~ 691 (909)
..+|++|+++..+..+... ...|.+|.+|+
T Consensus 362 F~~C~~L~~i~lp~~~~~~------~~~F~~c~~L~ 391 (394)
T 4fs7_A 362 FQGCINLKKVELPKRLEQY------RYDFEDTTKFK 391 (394)
T ss_dssp BTTCTTCCEEEEEGGGGGG------GGGBCTTCEEE
T ss_pred hhCCCCCCEEEECCCCEEh------hheecCCCCCc
Confidence 3466666666543322111 12477787775
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-07 Score=97.99 Aligned_cols=73 Identities=23% Similarity=0.323 Sum_probs=36.9
Q ss_pred EEeeCC-CCCccCCCC-CCCCeeEEEcCC-CCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 345 LQWHGC-PLKSLSSKI-PPENLVSLEMPH-SSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 345 L~l~~~-~l~~lp~~~-~~~~L~~L~L~~-~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
++.+++ .+..+|. + .+.+|++|+|++ |.+..++ ..+..|++|++|+|++|.+....|. |.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344454 5555555 4 344555555553 5555555 2355555555555555554443333 444444444444444
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.34 E-value=8.1e-07 Score=97.58 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=30.8
Q ss_pred cCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCC
Q 039311 578 SFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 638 (909)
+.++++|+.|+|++|.+..++ ..|.++++|+.|+|++|+++.+|..+.....|+.|+|.+|
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 444555555555555555433 2445555555555555555555543332223555555554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-05 Score=86.27 Aligned_cols=321 Identities=13% Similarity=0.095 Sum_probs=168.6
Q ss_pred EEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCccc
Q 039311 300 EIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQ 376 (909)
Q Consensus 300 ~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~ 376 (909)
...+...||.++.+|+.+.+..+ +. .+. ...+. +.+|+.+.+..+ ++.++... ....|+.+.++.+ +..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~----~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~ 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR----EIG-EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKS 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC----EEC-TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc----Ccc-hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eee
Confidence 34567788888888888887632 11 111 12233 567777777543 55665433 4556666655533 333
Q ss_pred cc-cccccCCCCCEEecCCCcCCCcCC--CCCccccccccccccccccceec-ccccCCCcccEeccccccCccccCccc
Q 039311 377 LW-KGVQRLVNLKHINLSHSEHLTKIP--DLSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSI 452 (909)
Q Consensus 377 lp-~~~~~L~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~ 452 (909)
+. ..+..+..+........ ..+. .|.++.+|+.+.+..+ ...++ ..+..+.+|+.+.+..+ ++.++...
T Consensus 131 i~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~ 203 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYC 203 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTT
T ss_pred ecceeeecccccccccCccc---cccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchh
Confidence 32 12233322222222111 1112 2556666666666432 12222 23445566666655432 34433322
Q ss_pred --cCCcCcEEEccCCCC-CcccCccccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcccccCCCCCCee
Q 039311 453 --HLGSLKKLILSGCSN-LMSFPELSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERL 528 (909)
Q Consensus 453 --~l~~L~~L~Ls~c~~-l~~lp~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L 528 (909)
++..|+.+.+..... ++.......+|+.+.+..+ +..+. ..+..+..|+.+.+..+. ...-...+..+..|+.+
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKV 281 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEE
T ss_pred hccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeecccccccccccee
Confidence 345555544433211 1111112234555544322 22232 235567777777776542 22222345666666666
Q ss_pred ecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCC
Q 039311 529 NLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSS 606 (909)
Q Consensus 529 ~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~ 606 (909)
.... . .++ ..+..+.+|+.+.+.. ++....-..+.++.+|+.++|.++ +..+ ..++.++.+
T Consensus 282 ~~~~---------~---~i~~~~F~~~~~L~~i~l~~----~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 282 IYGS---------V---IVPEKTFYGCSSLTEVKLLD----SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp EECS---------S---EECTTTTTTCTTCCEEEECT----TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred ccCc---------e---eecccccccccccccccccc----ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 5421 1 122 2356677788877754 222222334667888999988643 5554 357788999
Q ss_pred CcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcCceecccCcccccc
Q 039311 607 RSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 607 L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l 665 (909)
|+.+.+..+ ++.++. .+.++++|+.+.+... ++.+. -...+|++|+.+
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~--------~~F~~c~~L~~I 393 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYR--------YDFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGG--------GGBCTTCEEEEE
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhh--------heecCCCCCcEE
Confidence 999999766 777764 6678889999888642 32221 135688888765
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=4e-08 Score=108.93 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=33.0
Q ss_pred CccccccCCCCeeecCcccccccccccc-CccCCCCCCCEEecCCCCCCCc-cc---ccCCCCC--CcEEE--CCCCCCe
Q 039311 548 PSSIACLKNLGRLSFESFMCHEQMGLLL-PISFGLTSLTYLRLTDCGIIEL-PE---CLGQLSS--RSILL--LEKNNFE 618 (909)
Q Consensus 548 p~~i~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~~~l~~l-p~---~l~~l~~--L~~L~--L~~n~l~ 618 (909)
+..+...++|+.|++++|.........+ ..+...++|+.|+|++|.+.+. .. .+..... |+.+. +..+.+.
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445555667777776632211110011 1123457889999999988731 11 1222222 77776 6666554
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.6e-08 Score=105.85 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCCC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.++|++|+|++|.+.+ ++..+...++|+.|+|++|.++ .++..+...++|++|+|++|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 3445555555555442 2344444555566666655554 223334445556666666553
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=7.1e-06 Score=92.21 Aligned_cols=217 Identities=11% Similarity=0.027 Sum_probs=127.9
Q ss_pred CChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhC--CCeEEEEEeCCCCH--------HHHHHHhhccCCC---C--
Q 039311 12 GGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTS--------EQMEFLIGNQGWL---M-- 76 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~--------~~~~~l~~~~~~~---~-- 76 (909)
.+...+.++++.++.........+..+....+.+.|. +++++|||||++.. +.+..+...+... +
T Consensus 98 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 177 (412)
T 1w5s_A 98 PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGV 177 (412)
T ss_dssp CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCC
Confidence 4667888888888852111111222344556666665 68999999999764 3344443322211 2
Q ss_pred CCCEEEEEeCCchhhhhcC---------CCcEEECCCCCHHHHHHHHHHh---hcCCCCCCchhHHHHHHHHHHhC----
Q 039311 77 QGSRLIITARDKQVLKNCG---------VDTIYEVKELFDDDARMLFSRY---AFGKNYPNVGYMELSNKIIKYAK---- 140 (909)
Q Consensus 77 ~gSrIivTTR~~~v~~~~~---------~~~~y~l~~L~~~es~~LF~~~---af~~~~~~~~~~~l~~~iv~~c~---- 140 (909)
..-.||+|||+.++...+. ....+++++++.++++++|... +|.....+ .+....|+++++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKG 254 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGT
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhcc
Confidence 2334888998765432211 1233999999999999999754 44432222 356788889999
Q ss_pred --CCchHHHHHhHhh------cCC---CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccC-C---C
Q 039311 141 --GVPLAIKVLGRFL------CGR---RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFK-G---E 205 (909)
Q Consensus 141 --GlPLal~~lg~~L------~~~---~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~-~---~ 205 (909)
|.|..+..+.... .+. +.+.+..++..... ...+.-+++.||...+.++..+|.++. + .
T Consensus 255 ~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 9997655554321 122 34555555443210 344566788999999999988887642 1 2
Q ss_pred CHHHHHHHH-----HhcCCC------cccchhHhhhccccEEe
Q 039311 206 DKDCVIKFL-----DGCGFS------AEIGISVLVDKCLMVIL 237 (909)
Q Consensus 206 ~~~~li~~w-----~~~g~~------~~~~i~~L~~~~li~~~ 237 (909)
....+...+ ...|.. ...+++.|++.++|...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 344333322 223432 13468899999999875
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.6e-07 Score=97.03 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=40.8
Q ss_pred CCCCCCEEecCCCCCCC-ccccc---CCCCCCcEEECCCCCCee-----cchhhccCCCCCEEeecCCC
Q 039311 580 GLTSLTYLRLTDCGIIE-LPECL---GQLSSRSILLLEKNNFER-----IPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~-lp~~l---~~l~~L~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c~ 639 (909)
.+|+|+.|+|++|.+.+ .+..+ ..+++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 36778888887777662 11111 357788888888887763 45555677888888888774
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.4e-06 Score=93.84 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=70.3
Q ss_pred cccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceeccccc--CCCcccEecccccc-------CccccC
Q 039311 379 KGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQ--YLNKLVVLNLKHCR-------SLTSLS 449 (909)
Q Consensus 379 ~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~--~L~~L~~L~L~~c~-------~l~~lp 449 (909)
.-+..+++|+.|+|+++.... ++.+ .+++|++|++..|.........+. .+++|++|+|+.+. .+..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 334566778888887764332 3334 367788888877664433333343 67788888775321 121221
Q ss_pred ccc---cCCcCcEEEccCCCCCcccC------ccccCcceeeccccCccc-----cCcccccCCCCCEEeccCCC
Q 039311 450 TSI---HLGSLKKLILSGCSNLMSFP------ELSCNIEELSLDGTAIQE-----FPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 450 ~~~---~l~~L~~L~Ls~c~~l~~lp------~~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~ 510 (909)
..+ .+++|+.|++++|......+ ...++|+.|+|+.|.+.. ++..+..+++|+.|+|++|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 111 36677777777665432111 123455666666555542 34444555666666666553
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=85.54 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=119.3
Q ss_pred chHHHHHhhCC-CeEEEEEeCCCCHH---------HHHHHhhccCCCCCCCEEEEEeCCchhhhhc-----------CC-
Q 039311 39 GLNFRSKRLSR-KKVLIVFDDVSTSE---------QMEFLIGNQGWLMQGSRLIITARDKQVLKNC-----------GV- 96 (909)
Q Consensus 39 ~~~~i~~~L~~-kr~LlVLDDv~~~~---------~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~-----------~~- 96 (909)
....+.+..+. ++++|||||++... .+..+...... .++.++|+|++...+.... +.
T Consensus 116 ~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~ 194 (350)
T 2qen_A 116 VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRI 194 (350)
T ss_dssp HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCC
T ss_pred HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCc
Confidence 33444444432 49999999997643 23444332221 2578999999886542211 11
Q ss_pred CcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcC-CCHHHHH-HHHHHHhcCCCc
Q 039311 97 DTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCG-RRIKDWE-STIKKIKRIPHV 174 (909)
Q Consensus 97 ~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~-~~~~~W~-~~l~~L~~~~~~ 174 (909)
...+++.+|+.+|+.+++....-....... .+.+..++..++|.|+++..++..+.. .+..++- ...+........
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMG 272 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHH
Confidence 248999999999999999764321111111 356789999999999999999876532 2322221 111111110011
Q ss_pred chhhhhhhcccCCChhhhhhheeeeeccCCCCHHHHHHHHHhc--CCCc---ccchhHhhhccccEEeCCeEEe-hHHHH
Q 039311 175 DIQKVLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGC--GFSA---EIGISVLVDKCLMVILNNKIMM-HDLLQ 248 (909)
Q Consensus 175 ~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~~~~~li~~w~~~--g~~~---~~~i~~L~~~~li~~~~~~~~m-hdll~ 248 (909)
++. .+.++ ++..+.++..+|+ .......+...+... |... ..+++.|++.++|....+.+.+ |.+++
T Consensus 273 ~l~---~l~~~--~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~ 345 (350)
T 2qen_A 273 ELE---ELRRR--SPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVA 345 (350)
T ss_dssp HHH---HHHHH--CHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHH
T ss_pred HHH---HHHhC--ChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHH
Confidence 111 11122 6778888888887 223555555554322 3322 3568999999999987777776 55665
Q ss_pred HH
Q 039311 249 EM 250 (909)
Q Consensus 249 e~ 250 (909)
+.
T Consensus 346 ~~ 347 (350)
T 2qen_A 346 TV 347 (350)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0011 Score=73.78 Aligned_cols=129 Identities=11% Similarity=0.179 Sum_probs=71.0
Q ss_pred EeeCcccccCCC-CCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCC---CCccCCCC--CCCCeeEEEcCCCC
Q 039311 301 IHLNAGSFTNMH-KLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCP---LKSLSSKI--PPENLVSLEMPHSS 373 (909)
Q Consensus 301 ~~~~~~~f~~~~-~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~---l~~lp~~~--~~~~L~~L~L~~~~ 373 (909)
..+...+|.+++ .|+.+.+-++- . .+. ...+. ..+|+.+.+..+. ++.++... ...+|+.+.+..+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~sv-t----~Ig-~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~- 124 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDTV-T----EIG-SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS- 124 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTTC-C----EEC-TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-
T ss_pred eEcCHhhccCCCCcCEEEEECCCe-e----EEh-HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-
Confidence 346677888774 58887776321 0 111 12233 5677777776552 55554433 4556666666543
Q ss_pred ccccc-cccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccc
Q 039311 374 IKQLW-KGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 374 i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
++.++ ..+..+.+|+.+.+..+ ...+++ +..+.+|+.+.+..+ +..+....-...+|+.+.+.
T Consensus 125 ~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 125 VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEEC
T ss_pred cceehhhhhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEEC
Confidence 44444 33566777777777643 333443 667777777776542 33343332233456666554
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.99 E-value=7.6e-06 Score=89.89 Aligned_cols=189 Identities=13% Similarity=0.123 Sum_probs=115.0
Q ss_pred CeEEEEEeCCCCHH-----H-HHHHhhccCCCCCCCEEEEEeCCchhhhh-----------cCC-CcEEECCCCCHHHHH
Q 039311 50 KKVLIVFDDVSTSE-----Q-MEFLIGNQGWLMQGSRLIITARDKQVLKN-----------CGV-DTIYEVKELFDDDAR 111 (909)
Q Consensus 50 kr~LlVLDDv~~~~-----~-~~~l~~~~~~~~~gSrIivTTR~~~v~~~-----------~~~-~~~y~l~~L~~~es~ 111 (909)
++++|||||++... + +..+..... ..++.++|+|+|....... .+. ...+++.+|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 49999999997632 2 233322221 1247899999998754321 111 358999999999999
Q ss_pred HHHHHhhcC-CCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcC-CCHHHHHHH-HHHHhcCCCcchhhhhhhccc--C
Q 039311 112 MLFSRYAFG-KNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCG-RRIKDWEST-IKKIKRIPHVDIQKVLKVSFD--G 186 (909)
Q Consensus 112 ~LF~~~af~-~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~-~~~~~W~~~-l~~L~~~~~~~i~~~L~~sy~--~ 186 (909)
+++...+-. +..+.+ . ..|+..++|.|+++..++..+.. .+..+|-.. .+........++. .+.++ .
T Consensus 216 ~~l~~~~~~~~~~~~~-~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~ 287 (357)
T 2fna_A 216 EFLRRGFQEADIDFKD-Y----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFE---NFLHGREI 287 (357)
T ss_dssp HHHHHHHHHHTCCCCC-H----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---HHHTTCGG
T ss_pred HHHHHHHHHcCCCCCc-H----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHH---HHhhcccc
Confidence 999874321 112222 1 78999999999999999987642 233344221 1111110011111 12221 6
Q ss_pred CChhhhhhheeeeeccCCCCHHHHHHHHH-hcC--CC---cccchhHhhhccccEEeCCeEEe-hHHHHHH
Q 039311 187 LDDEEQNLFLDIASFFKGEDKDCVIKFLD-GCG--FS---AEIGISVLVDKCLMVILNNKIMM-HDLLQEM 250 (909)
Q Consensus 187 L~~~~k~cfl~~a~f~~~~~~~~li~~w~-~~g--~~---~~~~i~~L~~~~li~~~~~~~~m-hdll~e~ 250 (909)
|++..+..+..+|+ |.+...+..... ..| .. ...+++.|++.++|....+.+.+ |.++++.
T Consensus 288 l~~~~~~~l~~la~---g~~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 288 ARKRYLNIMRTLSK---CGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp GHHHHHHHHHHHTT---CBCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred ccHHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 88888999998887 224455544332 234 32 24568999999999987677774 6777664
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0016 Score=71.87 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=71.2
Q ss_pred cccCCCCCEEeccCCCCCCcCc-ccccCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccc
Q 039311 495 IERLSSLILLNLGNCLRLEGLP-SKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMG 572 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp-~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~ 572 (909)
+....+|+.+.+... +..++ ..+..+..|+.+.+..+++ .+. ..+..+.+|+.+.+.. ++..
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~v~----------~I~~~aF~~~~~l~~i~l~~----~i~~ 276 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKNVT----------SIGSFLLQNCTALKTLNFYA----KVKT 276 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTTCC----------EECTTTTTTCTTCCEEEECC----CCSE
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCCcc----------EeCccccceeehhccccccc----ccee
Confidence 444556666655432 22222 2345666676666644322 222 2345566677776643 2222
Q ss_pred cccCccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeec
Q 039311 573 LLLPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGIS 636 (909)
Q Consensus 573 ~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~ 636 (909)
.....+.++.+|+.+.+.++.+..++ ..+.++.+|+.+.|..+ ++.++. .+.++.+|+.+.+.
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 22234566788888888877777654 46778888888888643 666654 44556666655553
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.002 Score=71.56 Aligned_cols=272 Identities=11% Similarity=0.205 Sum_probs=137.9
Q ss_pred CeeEEEcCCCCccccc-cccccCCCCCEEecCCCc--CCCcCCC--CCccccccccccccccccceec-ccccCCCcccE
Q 039311 363 NLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSE--HLTKIPD--LSLATNLESLNFQGCTCLLETH-SSIQYLNKLVV 436 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~--~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~ 436 (909)
.|+.+.++.+ ++.+. ..+.++.+|+.+.+..+. .++.+.. |..+.+|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 4666666643 55554 346667777777776542 2334443 666777777666542 33333 34556677777
Q ss_pred eccccccCccccCccc--cCCcCcEEEccCCCCCcccCc---cccCcceeeccccCccccCcccccCCCCCEEeccCCCC
Q 039311 437 LNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLR 511 (909)
Q Consensus 437 L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~ 511 (909)
+.+.. .+..++... ++.+|+.+.+.+. +..+.. ...+|+.+.+..+-..--...+..+..|..........
T Consensus 142 i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPE--GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccc--eeeeecccceecccccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccceeccccccc
Confidence 77653 234443332 4666666666532 222211 11234444443322221122344455555554433211
Q ss_pred CCcCcccc--------------cCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccccC
Q 039311 512 LEGLPSKI--------------CKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLLLP 576 (909)
Q Consensus 512 l~~lp~~l--------------~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 576 (909)
. .+...+ .....+..+.+.. .+..+. ..+..+++|+.+.+.. ......-.
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~----------~v~~i~~~aF~~c~~L~~i~lp~----~~~~I~~~ 282 (394)
T 4gt6_A 218 P-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN----------GVARIETHAFDSCAYLASVKMPD----SVVSIGTG 282 (394)
T ss_dssp C-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT----------TEEEECTTTTTTCSSCCEEECCT----TCCEECTT
T ss_pred c-cccceeecccccccccccccccccccceEEcCC----------cceEcccceeeecccccEEeccc----ccceecCc
Confidence 1 111000 0111122222211 122222 2356677788887754 12222223
Q ss_pred ccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcCce
Q 039311 577 ISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLSDI 654 (909)
Q Consensus 577 ~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L 654 (909)
.+.++++|+.+.+. ..+..++ ..+.++.+|+.+.|..+ ++.+.. .+.++.+|+.+.|.. .++.|++ =
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~-------~ 351 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPE-------S 351 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCG-------G
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhH-------h
Confidence 35667888888885 3444443 45677888999888754 666654 567788888887753 2444443 1
Q ss_pred ecccCcccccccC
Q 039311 655 EAHCCSSLEALSG 667 (909)
Q Consensus 655 ~i~~C~~L~~l~~ 667 (909)
-..+|.+|+++..
T Consensus 352 aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 352 AFSNCTALNNIEY 364 (394)
T ss_dssp GGTTCTTCCEEEE
T ss_pred HhhCCCCCCEEEE
Confidence 2346777766654
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.67 E-value=1.2e-05 Score=77.75 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=48.6
Q ss_pred ccCCCC-CCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCC--CCCc----cccccccccccccccc-ee
Q 039311 354 SLSSKI-PPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIP--DLSL----ATNLESLNFQGCTCLL-ET 424 (909)
Q Consensus 354 ~lp~~~-~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p--~l~~----l~~L~~L~L~~c~~l~-~~ 424 (909)
.+|... .-.+|+.||++++.|+..- ..+..+++|+.|+|++|..++.-- .++. +++|++|+|++|..++ .-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 445443 3446777777777765321 335567777777777776443211 1222 2345566666554322 22
Q ss_pred cccccCCCcccEeccccccCccc
Q 039311 425 HSSIQYLNKLVVLNLKHCRSLTS 447 (909)
Q Consensus 425 p~~i~~L~~L~~L~L~~c~~l~~ 447 (909)
-..+..+++|++|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 23344455555555555554443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.64 E-value=1.5e-05 Score=77.06 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=67.4
Q ss_pred ccccccccCCCCCEEecCCCcCCCc-CCCCCccccccccccccccccce-ecccccCC----CcccEeccccccCcccc-
Q 039311 376 QLWKGVQRLVNLKHINLSHSEHLTK-IPDLSLATNLESLNFQGCTCLLE-THSSIQYL----NKLVVLNLKHCRSLTSL- 448 (909)
Q Consensus 376 ~lp~~~~~L~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~c~~l~~-~p~~i~~L----~~L~~L~L~~c~~l~~l- 448 (909)
.+|.....-.+|+.||+++|.+... +..+..+++|++|+|++|..++. --..+..+ ++|++|+|++|..+++-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4555433345799999999974332 23478899999999999975433 33445554 47999999999888762
Q ss_pred -CccccCCcCcEEEccCCCCCcc
Q 039311 449 -STSIHLGSLKKLILSGCSNLMS 470 (909)
Q Consensus 449 -p~~~~l~~L~~L~Ls~c~~l~~ 470 (909)
.....+++|+.|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 2223689999999999987654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.005 Score=67.90 Aligned_cols=147 Identities=11% Similarity=0.142 Sum_probs=88.3
Q ss_pred ccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecC-ccccccCCCCeeecCccccccccccc
Q 039311 496 ERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVP-SSIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
.....+..+.+.... .......+....+|+.+.+..++. .+. ..+..+.+|+.+.+.. ++....
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~~----------~i~~~~f~~~~~L~~i~lp~----~v~~I~ 255 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGVT----------TLGDGAFYGMKALDEIAIPK----NVTSIG 255 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTCC----------EECTTTTTTCSSCCEEEECT----TCCEEC
T ss_pred cccccccccccccce-eEEeecccccccccceeeecccee----------EEccccccCCccceEEEcCC----CccEeC
Confidence 344455555444321 111223355667777777644322 222 2356677888888754 222222
Q ss_pred cCccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCCCCcccCCCCCCcC
Q 039311 575 LPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCERLHSLPELPCDLS 652 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~ 652 (909)
...+.++.+|+.+.+... +..++ ..+.++++|+.+.+.++.++.++. .+.++.+|+.+.|.. .++.|+..
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~----- 327 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVY----- 327 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT-----
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHH-----
Confidence 334566888999988654 44443 467889999999999999988875 567888999988853 24444431
Q ss_pred ceecccCcccccccC
Q 039311 653 DIEAHCCSSLEALSG 667 (909)
Q Consensus 653 ~L~i~~C~~L~~l~~ 667 (909)
-..+|.+|+++..
T Consensus 328 --aF~~C~~L~~i~i 340 (379)
T 4h09_A 328 --AFKNCKALSTISY 340 (379)
T ss_dssp --TTTTCTTCCCCCC
T ss_pred --HhhCCCCCCEEEE
Confidence 1235666665544
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0013 Score=72.75 Aligned_cols=214 Identities=13% Similarity=0.005 Sum_probs=128.1
Q ss_pred ChHHHHHHHHHHHhcCCCC-cccCCccchHHHHHhhCCCeEEEEEeCCCCHHH---HHH-HhhccCCCCCCCEEEEEeCC
Q 039311 13 GLAHLRQILLSAILDDGNV-SIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQ---MEF-LIGNQGWLMQGSRLIITARD 87 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~-~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~---~~~-l~~~~~~~~~gSrIivTTR~ 87 (909)
....+..+++.++.+.... ...+.......+.+.++.++.+|||||++.... .+. +.....+. .+.+||+||+.
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 4556777788887522111 112234456778888888777999999986543 222 22222333 78899999997
Q ss_pred chhhhhc------CCCcEEECCCCCHHHHHHHHHHhh---cCCCCCCchhHHHHHHHHHHhC---CCch-HHHHHhHhh-
Q 039311 88 KQVLKNC------GVDTIYEVKELFDDDARMLFSRYA---FGKNYPNVGYMELSNKIIKYAK---GVPL-AIKVLGRFL- 153 (909)
Q Consensus 88 ~~v~~~~------~~~~~y~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~---GlPL-al~~lg~~L- 153 (909)
....... .....+++++++.++..++|...+ |.....++ +..+.++++++ |.|- |+..+-.+.
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 6322111 112389999999999999999874 43333333 44567777777 8876 444433332
Q ss_pred -c----CCCHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccC-CCCHHHHHHHHHhcCCCc------
Q 039311 154 -C----GRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFK-GEDKDCVIKFLDGCGFSA------ 221 (909)
Q Consensus 154 -~----~~~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~-~~~~~~li~~w~~~g~~~------ 221 (909)
. ..+.+.++.+++.... ..+.-++++|+..+|..+..++.... +...+....+....|..+
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1 2368888888876532 34556678889888877766665111 111112223333334211
Q ss_pred ccchhHhhhccccEEe
Q 039311 222 EIGISVLVDKCLMVIL 237 (909)
Q Consensus 222 ~~~i~~L~~~~li~~~ 237 (909)
..+++.|.++++|...
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 2346778888988864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0025 Score=70.45 Aligned_cols=246 Identities=13% Similarity=0.004 Sum_probs=137.5
Q ss_pred ChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhh--CCCeEEEEEeCCCCHH----HHHHHhhccCCC-----CCCCEE
Q 039311 13 GLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRL--SRKKVLIVFDDVSTSE----QMEFLIGNQGWL-----MQGSRL 81 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L--~~kr~LlVLDDv~~~~----~~~~l~~~~~~~-----~~gSrI 81 (909)
+...+..+++.++.........+..+....+.+.+ .+++++|||||++... +.+.+...+.+. ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 44566777777774211111222334455666666 4568999999998754 223333222221 456688
Q ss_pred EEEeCCchh--------hhhcCCCcEEECCCCCHHHHHHHHHHhh---cCCCCCCchhHHHHHHHHHHhC---CCc-hHH
Q 039311 82 IITARDKQV--------LKNCGVDTIYEVKELFDDDARMLFSRYA---FGKNYPNVGYMELSNKIIKYAK---GVP-LAI 146 (909)
Q Consensus 82 ivTTR~~~v--------~~~~~~~~~y~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~---GlP-Lal 146 (909)
|.||+.... ...++ ...+.+++++.++..+++...+ +.....++ +..+.++++++ |.| .|+
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~ 246 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRAL 246 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHH
Confidence 888887632 22221 2589999999999999998874 33333233 34567777777 999 343
Q ss_pred HHHhHhhc-----C---CCHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccCCC---CHHHHH----
Q 039311 147 KVLGRFLC-----G---RRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE---DKDCVI---- 211 (909)
Q Consensus 147 ~~lg~~L~-----~---~~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~---~~~~li---- 211 (909)
..+..+.. + .+.+.++.+++.... ..+.-++.+|+...+..++.++....+. ....+.
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIER-------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 43333321 2 267788888776532 2455567889998888777777554443 222222
Q ss_pred HHHHhcCCCc------ccchhHhhhccccEEeCCeEEehHHHHHHHHHHhhhcccCCCCCeeeeccchhHHHHhhcCCCC
Q 039311 212 KFLDGCGFSA------EIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGT 285 (909)
Q Consensus 212 ~~w~~~g~~~------~~~i~~L~~~~li~~~~~~~~mhdll~e~~~~i~~~~~~~~~~~~~rl~~~~~i~~~l~~~~~~ 285 (909)
.+....|..+ ...++.|...|++...... ...-......+..|.++++..++.+....
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~----------------~g~~g~~~~~~l~~~~~~i~~~l~~~~~~ 383 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVS----------------RGRYGKTREVSLDADRLAVENALSEDPFV 383 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEE----------------CGGGCEEEEEEECSCHHHHHHHHHHSTTG
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeec----------------CCCCCceeEEEecCCHHHHHHHHhccHhh
Confidence 2222233211 2346777777777763100 00000011334567778888887765443
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0015 Score=66.72 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=75.1
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCchhhh-h-cCCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQVLK-N-CGVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~-~-~~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++.+|||||++. .+.++.+...+.....+.+||+||+...... . ......+++++++.+|..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 34689999999965 5567777776655567889999997754222 1 122368999999999999999888754332
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHHhHhh
Q 039311 124 PNVGYMELSNKIIKYAKGVPLAIKVLGRFL 153 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLal~~lg~~L 153 (909)
..+ .+..+.++++|+|.|..+..+...+
T Consensus 204 ~~~--~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AHE--PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CBC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 211 3567889999999999888776543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00013 Score=72.01 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEEC--CCCCCee-----cchhhccCCCCCEEeecCC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLL--EKNNFER-----IPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L--~~n~l~~-----lp~~i~~l~~L~~L~L~~c 638 (909)
.++|++|+|++|.+.+ +...+...++|+.|+| ++|.+.. +...+...+.|++|+|++|
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3456666666666663 4455555666666666 5566651 3344455566666666655
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00039 Score=72.35 Aligned_cols=60 Identities=30% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCCeeEEEcCCCCccccc---cccccCCCCCEEecCCCcCCCcCCCCCccc--ccccccccccccc
Q 039311 361 PENLVSLEMPHSSIKQLW---KGVQRLVNLKHINLSHSEHLTKIPDLSLAT--NLESLNFQGCTCL 421 (909)
Q Consensus 361 ~~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~--~L~~L~L~~c~~l 421 (909)
+.+|++|+|++|.|..++ ..+..+++|++|+|++|.+... .++..+. +|++|+|++|...
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 345555555555555433 3344566666666666553322 2222222 4555555554433
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00077 Score=70.09 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCCCEEecCCCCCCCc---ccccCCCCCCcEEECCCCCCeecchhhccCC--CCCEEeecCCCCCcccC
Q 039311 581 LTSLTYLRLTDCGIIEL---PECLGQLSSRSILLLEKNNFERIPESIIQLS--HLFSLGISHCERLHSLP 645 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~l---p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~--~L~~L~L~~c~~L~~lp 645 (909)
+++|+.|+|++|.+..+ |..+..+++|+.|+|++|++..+. .+..+. +|++|+|++|+--..+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 55666666666666643 344456777777777777776552 233333 67777777766433343
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00017 Score=70.98 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=69.6
Q ss_pred cccCCCCCEEeccCC-CCCC----cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccc
Q 039311 495 IERLSSLILLNLGNC-LRLE----GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHE 569 (909)
Q Consensus 495 i~~l~~L~~L~L~~c-~~l~----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 569 (909)
+...+.|+.|+|++| .... .+...+...++|+.|++..| .+.......+...+...++|+.|++++|....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n----~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT----RSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS----CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC----CCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 445566666666666 3322 13334455566666665332 01111112344445566778888888743322
Q ss_pred ccccc-cCccCCCCCCCEEec--CCCCCCC-----cccccCCCCCCcEEECCCCCCe
Q 039311 570 QMGLL-LPISFGLTSLTYLRL--TDCGIIE-----LPECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 570 ~~~~~-~~~~~~l~~L~~L~L--s~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 618 (909)
..... ...+...++|++|+| ++|.+.+ +...+...++|+.|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 11111 122445678999999 7888883 5566677789999999999875
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0031 Score=69.61 Aligned_cols=188 Identities=11% Similarity=0.012 Sum_probs=110.4
Q ss_pred hHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhhccCC-CCCCCEEEEEeCCchhhhhcC-------CCcEEECC
Q 039311 40 LNFRSKRLS--RKKVLIVFDDVSTSE------QMEFLIGNQGW-LMQGSRLIITARDKQVLKNCG-------VDTIYEVK 103 (909)
Q Consensus 40 ~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~~~~-~~~gSrIivTTR~~~v~~~~~-------~~~~y~l~ 103 (909)
...+.+.+. +++.+|||||++... .+..+...... ...+..||+||++......+. ....++++
T Consensus 116 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~ 195 (386)
T 2qby_A 116 YRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP 195 (386)
T ss_dssp HHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC
T ss_pred HHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC
Confidence 445555554 458999999997633 34444433321 234567788998775443331 12589999
Q ss_pred CCCHHHHHHHHHHhh---cCCCCCCchhHHHHHHHHHHhC---CCchHHH-HHhHhh-----cC---CCHHHHHHHHHHH
Q 039311 104 ELFDDDARMLFSRYA---FGKNYPNVGYMELSNKIIKYAK---GVPLAIK-VLGRFL-----CG---RRIKDWESTIKKI 168 (909)
Q Consensus 104 ~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~---GlPLal~-~lg~~L-----~~---~~~~~W~~~l~~L 168 (909)
+++.++..+++...+ +...... .+..+.++++++ |.|..+. .+.... .+ .+.+.++.+++..
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999999999998764 3222222 355667777777 9997443 333322 12 2577777777655
Q ss_pred hcCCCcchhhhhhhcccCCChhhhhhheeeeeccC-CC---CHHHH----HHHHHhcCCCc------ccchhHhhhcccc
Q 039311 169 KRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFK-GE---DKDCV----IKFLDGCGFSA------EIGISVLVDKCLM 234 (909)
Q Consensus 169 ~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~-~~---~~~~l----i~~w~~~g~~~------~~~i~~L~~~~li 234 (909)
. ...+.-++.+++..++..+..++...+ +. ....+ ..+-...|..+ ..+++.|.+.|+|
T Consensus 273 ~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli 345 (386)
T 2qby_A 273 E-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGIL 345 (386)
T ss_dssp H-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSE
T ss_pred h-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCE
Confidence 3 234556677889888888877775443 22 12222 22222334322 2457778888888
Q ss_pred EEe
Q 039311 235 VIL 237 (909)
Q Consensus 235 ~~~ 237 (909)
...
T Consensus 346 ~~~ 348 (386)
T 2qby_A 346 TAK 348 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.033 Score=61.32 Aligned_cols=236 Identities=13% Similarity=0.040 Sum_probs=130.2
Q ss_pred ChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhC--CCeEEEEEeCCCCH--HHHHHHhhccCCCC----CCCEEEEE
Q 039311 13 GLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTS--EQMEFLIGNQGWLM----QGSRLIIT 84 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~--~~~~~l~~~~~~~~----~gSrIivT 84 (909)
....+.++++..+.........+..+....+.+.+. +++.+|||||++.. +.+..+........ .+-.||+|
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 345666677666632111111122233444444443 56899999999763 44666655443322 46688888
Q ss_pred eCCchhhhhcC-------CCcEEECCCCCHHHHHHHHHHhhc---CCCCCCchhHHHHHHHHHHh---------CCCchH
Q 039311 85 ARDKQVLKNCG-------VDTIYEVKELFDDDARMLFSRYAF---GKNYPNVGYMELSNKIIKYA---------KGVPLA 145 (909)
Q Consensus 85 TR~~~v~~~~~-------~~~~y~l~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~iv~~c---------~GlPLa 145 (909)
|++..+..... ....+++++++.++..+++...+- .....+ .+....+++++ +|.|-.
T Consensus 166 ~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~ 242 (389)
T 1fnn_A 166 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARL 242 (389)
T ss_dssp ESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHH
T ss_pred ECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHH
Confidence 88775443321 124799999999999999987653 222222 35677888888 788754
Q ss_pred HHHHh-Hhhc-----CC---CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeeeecc---CC--CCHHHHH
Q 039311 146 IKVLG-RFLC-----GR---RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFF---KG--EDKDCVI 211 (909)
Q Consensus 146 l~~lg-~~L~-----~~---~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~---~~--~~~~~li 211 (909)
+..+. .+.. +. +.+....++..... . ...-.+..|+...|.++..++.+. .+ .....+.
T Consensus 243 ~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 315 (389)
T 1fnn_A 243 AIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF---G----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAE 315 (389)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC---C----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh---h----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHH
Confidence 44332 2221 22 34444444444321 1 122234567777777776666554 22 2333443
Q ss_pred HHHH----hcCCCc------ccchhHhhhccccEEeC--------Ce-------EEehHHHHHHHHHHhhhc
Q 039311 212 KFLD----GCGFSA------EIGISVLVDKCLMVILN--------NK-------IMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 212 ~~w~----~~g~~~------~~~i~~L~~~~li~~~~--------~~-------~~mhdll~e~~~~i~~~~ 258 (909)
+.+. ..|..+ ..+++.|.++++|.... ++ +..||+++.+...|..++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 316 ESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 3322 234322 14588899999998852 11 124566666665555443
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.028 Score=56.16 Aligned_cols=101 Identities=8% Similarity=0.017 Sum_probs=69.3
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCchhh-hhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQVL-KNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
.++.+|||||++.. +.++.+...+.....+.++|+||+...-. ... ..-..+++.+++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999764 44566665555456778999999875421 111 122389999999999999998877532221
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHhH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLGR 151 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg~ 151 (909)
-+ .+..+.+++.++|.|..+..+..
T Consensus 181 ~~--~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 181 IT--EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp BC--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 34567888999999986655433
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.026 Score=60.40 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=68.1
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++.+|||||++. .+.++.+...+.....+.++|+||+... +.... ..-..+++.+++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 45689999999976 3445555554444456788999887643 21211 22348999999999999999887643221
Q ss_pred CCchhHHHHHHHHHHhCCCchH-HHHHhH
Q 039311 124 PNVGYMELSNKIIKYAKGVPLA-IKVLGR 151 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLa-l~~lg~ 151 (909)
..+ .+....++++++|.|.. +..+..
T Consensus 185 ~~~--~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 185 KYT--NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CBC--HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 111 35568899999999954 444433
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.1 Score=47.58 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=40.5
Q ss_pred EEEeeCCCCC--ccCCCCCCCCeeEEEcCCCCccccccc-cccCCCCCEEecCCCcC
Q 039311 344 YLQWHGCPLK--SLSSKIPPENLVSLEMPHSSIKQLWKG-VQRLVNLKHINLSHSEH 397 (909)
Q Consensus 344 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~Ls~~~~ 397 (909)
.++.+++.++ .+|..++ .+|++|+|++|.|+.++.+ +..+++|++|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5677777777 8887654 4688888888888888855 56688888888888753
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.14 Score=46.56 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=33.7
Q ss_pred EEecCCCCCC--CcccccCCCCCCcEEECCCCCCeecchh-hccCCCCCEEeecCCC
Q 039311 586 YLRLTDCGII--ELPECLGQLSSRSILLLEKNNFERIPES-IIQLSHLFSLGISHCE 639 (909)
Q Consensus 586 ~L~Ls~~~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 639 (909)
.++-++..++ .+|..+ .++|+.|+|++|+++.+|.. +..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566666666 666443 23577777777777777653 4667777777777764
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=92.47 E-value=1.4 Score=46.66 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=105.3
Q ss_pred HHHHHhhCC---CeEEEEEeCCCCHH--HHHHHhhccCCC------------------CCCCEEEEEeCCchhhh-hc--
Q 039311 41 NFRSKRLSR---KKVLIVFDDVSTSE--QMEFLIGNQGWL------------------MQGSRLIITARDKQVLK-NC-- 94 (909)
Q Consensus 41 ~~i~~~L~~---kr~LlVLDDv~~~~--~~~~l~~~~~~~------------------~~gSrIivTTR~~~v~~-~~-- 94 (909)
..+...+.. +..+|+|||++... ..+.+...+... .++.++|.||....... ..
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~ 157 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS 157 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT
T ss_pred HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh
Confidence 344444443 66799999997642 334333222111 12456777776543221 11
Q ss_pred CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhc------CC---CHHHHHHHH
Q 039311 95 GVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLC------GR---RIKDWESTI 165 (909)
Q Consensus 95 ~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~------~~---~~~~W~~~l 165 (909)
....++.+.+++.+|..+++...+......-+ .+....++++++|.|-.+..+...+. +. +.+....++
T Consensus 158 R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 158 RFGIVEHLEYYTPEELAQGVMRDARLLGVRIT--EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEAL 235 (324)
T ss_dssp TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHH
T ss_pred cccEEEecCCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 12468999999999999999887754332211 35678899999999988776655442 11 344455544
Q ss_pred HHHhcCCCcchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcc----cchhHhhhccccEEeCC
Q 039311 166 KKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAE----IGISVLVDKCLMVILNN 239 (909)
Q Consensus 166 ~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~----~~i~~L~~~~li~~~~~ 239 (909)
..+ ...+..++..++..+...+..+.|. ....+.+. .|.... ..-+.+++.++|+....
T Consensus 236 ~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~---lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 236 AAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATA---LSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp HHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHH---TTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred HHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHH---hCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 432 2345667777777766555444433 24443332 233211 11223777888877643
Q ss_pred eEEehH
Q 039311 240 KIMMHD 245 (909)
Q Consensus 240 ~~~mhd 245 (909)
-..+-+
T Consensus 301 g~~~~~ 306 (324)
T 1hqc_A 301 GRVPTE 306 (324)
T ss_dssp EEEECH
T ss_pred cceecH
Confidence 333333
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.38 E-value=0.25 Score=52.55 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=70.0
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCchh-hhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQV-LKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~v-~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.+||+||++. .+.++.+...+.....+.++|+||....- .... ..-..+++.+++.++..+++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 5788999999975 35566666655555677899999876532 1111 112379999999999999998876543321
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHhHhh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLGRFL 153 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg~~L 153 (909)
-+ .+....+++.++|.|-.+..+...+
T Consensus 189 ~~--~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 189 LT--EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EC--HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 11 3566788899999998665544333
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=87.66 E-value=0.26 Score=48.20 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=39.4
Q ss_pred CCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCC
Q 039311 580 GLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c 638 (909)
.-+.|+.|+|++|.+.+ +...+..-+.|+.|+|+.|.+. .+-..+..-..|++|+|++|
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34677888888887772 4555556677888888888776 23344555566777777764
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=87.03 E-value=1.6 Score=47.25 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=66.8
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.+||+||++. .+.++.+...+.....+..+|+||.... +.... .....+++.+++.++..+++...+-.....
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999999975 4456666665554456678888876543 21211 123689999999999999998765322211
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
.+ .+....++++++|.|..+..+.
T Consensus 198 ~~--~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 HE--PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp BC--HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CC--HHHHHHHHHHCCCCHHHHHHHH
Confidence 11 3456788999999998776654
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=2.9 Score=43.01 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=69.5
Q ss_pred hCCCeEEEEEeCCCCH------------HHHHHHhhccCC---CCCCCEEEEEeCCchhhhhc---C-CCcEEECCCCCH
Q 039311 47 LSRKKVLIVFDDVSTS------------EQMEFLIGNQGW---LMQGSRLIITARDKQVLKNC---G-VDTIYEVKELFD 107 (909)
Q Consensus 47 L~~kr~LlVLDDv~~~------------~~~~~l~~~~~~---~~~gSrIivTTR~~~v~~~~---~-~~~~y~l~~L~~ 107 (909)
.+.+..+|+|||++.. ..++.+...... .+....||.||...+.+... + ....++++++++
T Consensus 121 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 121 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 3467899999998643 223444443332 23344577788877655432 1 256789999998
Q ss_pred -HHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCC------CchHHHHHhHhhcCCCHHHHHHHHHHHhcCC
Q 039311 108 -DDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKG------VPLAIKVLGRFLCGRRIKDWESTIKKIKRIP 172 (909)
Q Consensus 108 -~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~G------lPLal~~lg~~L~~~~~~~W~~~l~~L~~~~ 172 (909)
++-.+++.... ... .+....+++.+.| ++-++.++-.+-.......|+.++..+....
T Consensus 201 r~~i~~i~~~~~---~~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 201 GEQLLEALELLG---NFK----DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHHHHHT---CSC----HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC---CCC----HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 66666655421 111 3446777888877 4444444444333334567777777665543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=85.27 E-value=0.31 Score=47.72 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=40.4
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCC---CCe-----ecchhhccCCCCCEEeecC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKN---NFE-----RIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n---~l~-----~lp~~i~~l~~L~~L~L~~ 637 (909)
-+.|+.|+|++|.+.. +...+..-..|+.|+|++| .+. .+-..+..-+.|+.|+++.
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 4678999999998883 5667777788999999865 333 2334455566777777754
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=84.83 E-value=5.2 Score=41.85 Aligned_cols=99 Identities=8% Similarity=0.054 Sum_probs=67.8
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.+||+||++. .+..+.+...+.....+.++|+||.... +.... ..-..+++.+++.++..+++...+-.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6688999999975 3456777776666667788888887654 22211 122489999999999999998776443322
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
-+ .+....++..++|.+-.+..+
T Consensus 181 i~--~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 181 IT--EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp BC--HHHHHHHHHTTTTCHHHHHHH
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHH
Confidence 11 345677888899988765443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=84.19 E-value=1.4 Score=49.25 Aligned_cols=123 Identities=10% Similarity=0.058 Sum_probs=73.1
Q ss_pred HHHhhCCCeEEEEEeCCCCHH----HHHHHhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHH
Q 039311 43 RSKRLSRKKVLIVFDDVSTSE----QMEFLIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDD 108 (909)
Q Consensus 43 i~~~L~~kr~LlVLDDv~~~~----~~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~ 108 (909)
+.+.+..+.-+|+|||++... .-+.+...+.. ...|..||+||... .+...+....++.+++++.+
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred HHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 444455467799999996432 22333332211 23577899998762 23333444468999999999
Q ss_pred HHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCchHHHHHhH------hhcCC--CHHHHHHHHHHH
Q 039311 109 DARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPLAIKVLGR------FLCGR--RIKDWESTIKKI 168 (909)
Q Consensus 109 es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPLal~~lg~------~L~~~--~~~~W~~~l~~L 168 (909)
+-.+++.+.+-... ..++ +....|+++++|.+-.+..+-. .+.++ +.+.++.++..+
T Consensus 267 ~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999988774222 1122 3456778888888754432211 12333 567777776643
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=83.06 E-value=0.9 Score=45.59 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=58.0
Q ss_pred CeEEEEEeCCCCHH--H--HHHHhhccCC-CCCCC-EEEEEeCCch---------hhhhcCCCcEEECCCCCHHHHHHHH
Q 039311 50 KKVLIVFDDVSTSE--Q--MEFLIGNQGW-LMQGS-RLIITARDKQ---------VLKNCGVDTIYEVKELFDDDARMLF 114 (909)
Q Consensus 50 kr~LlVLDDv~~~~--~--~~~l~~~~~~-~~~gS-rIivTTR~~~---------v~~~~~~~~~y~l~~L~~~es~~LF 114 (909)
+..+|||||++... . .+.+...+.. ...|. +||+||+... +...+....++++++++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 45688999997532 1 2223222111 11232 5888876432 2222222368999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHH
Q 039311 115 SRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 115 ~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
...+-.....-+ .+....++++++|.+-.+..+
T Consensus 184 ~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 184 QRRAAMRGLQLP--EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHTTCCCC--HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHcCCCCC--HHHHHHHHHHccCCHHHHHHH
Confidence 887643221111 356678888899887665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 909 | ||||
| d2a5yb3 | 277 | c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor | 2e-26 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-05 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.002 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-07 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 1e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.003 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Score = 107 bits (269), Expect = 2e-26
Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 8/159 (5%)
Query: 38 IGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVD 97
+ + + R L VFDDV E + + R ++T RD ++
Sbjct: 123 LKRMICNALIDRPNTLFVFDDVVQEETIRWAQEL------RLRCLVTTRDVEISNAASQT 176
Query: 98 T-IYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR 156
EV L D+ Y ++ NK I+ + G P + + + +
Sbjct: 177 CEFIEVTSLEIDECYDFLEAYGM-PMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 235
Query: 157 RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLF 195
+ K++ V ++ + S+ L Q
Sbjct: 236 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCV 274
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 59.2 bits (142), Expect = 9e-10
Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 11/225 (4%)
Query: 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSL 367
T++ L + + T L L + ++ NL L
Sbjct: 165 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 224
Query: 368 EMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSS 427
+ + +K + + L NL ++L+++ ++ + LS T L L ++ S
Sbjct: 225 SLNGNQLKDI-GTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQI---SNIS 279
Query: 428 IQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSC--NIEELSLDG 485
+ + L +S +L +L L L N+ +S ++ L
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFAN 338
Query: 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530
+ + SS+ L+++ L+ G+ ++ L + L + +L L
Sbjct: 339 NKVSD-VSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGL 380
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 47.7 bits (112), Expect = 5e-06
Identities = 68/325 (20%), Positives = 113/325 (34%), Gaps = 27/325 (8%)
Query: 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL 421
+ + +L+ IK + GV+ L NL IN S++ LT I L T L +
Sbjct: 44 DQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIA 101
Query: 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEEL 481
T + + L + L +L L+ + S
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161
Query: 482 SLDGTAIQEFPSSIERLSSLILLN-------LGNCLRLEGLPSKICKLKSLERLNLAEAL 534
T ++ + I N L LE L + ++ + L + L
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221
Query: 535 KELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGI 594
EL G ++++ ++A L NL L + + Q+ L P+S GLT LT L+L I
Sbjct: 222 DELSLNGNQLKDIG-TLASLTNLTDLD----LANNQISNLAPLS-GLTKLTELKLGANQI 275
Query: 595 IELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSL--------GISHCERLHSLPE 646
+ G + ++ N I L +L L IS L L
Sbjct: 276 SNISPLAGLTALTNL--ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR 333
Query: 647 LPCDLSDIEAHCCSSLEALSGLSIL 671
L ++ + SSL L+ ++ L
Sbjct: 334 L--FFANNKVSDVSSLANLTNINWL 356
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 476 CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALK 535
N++ELSL+G +++ + + L++L L+L N ++ L + L L L L
Sbjct: 219 TNLDELSLNGNQLKDIGT-LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKL----- 270
Query: 536 ELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII 595
I + E+ + L +LTYL L I
Sbjct: 271 ----GANQISNISPLAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNIS 320
Query: 596 ELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647
++ + L+ L N + S+ L+++ L H ++ L L
Sbjct: 321 DISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPL 369
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 43.1 bits (100), Expect = 1e-04
Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 6/159 (3%)
Query: 259 SIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFK 318
+KD G + L + D+ + + G ++K+ E+ L A +N+ L
Sbjct: 230 QLKDIGTLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISPLAGLT 285
Query: 319 FYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW 378
++ L YL + + +S L L ++ + +
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV- 344
Query: 379 KGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417
+ L N+ ++ H+ ++ + L+ T + L
Sbjct: 345 SSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLND 382
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 0.002
Identities = 39/306 (12%), Positives = 90/306 (29%), Gaps = 20/306 (6%)
Query: 398 LTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSL 457
+T + + +L +++ ++YLN L +N + + LT ++ +L L
Sbjct: 34 VTDTVSQTDLDQVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQ-LTDITPLKNLTKL 90
Query: 458 KKLILSGCSNLMSFPELSCNIEELSL----DGTAIQEFPSSIERLSSLILLNLGNCLRLE 513
++++ P + T I + + N + +
Sbjct: 91 VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISAL 150
Query: 514 GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGL 573
+ + +L ++ + L L + ES +
Sbjct: 151 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 210
Query: 574 LLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSL 633
+ LT+L L L + ++ L L++ + L L N +
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP----------- 258
Query: 634 GISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKN 693
+S +L L +S+I + L+ + + L N
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317
Query: 694 ELKEII 699
+ +I
Sbjct: 318 NISDIS 323
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.4 bits (132), Expect = 1e-08
Identities = 45/289 (15%), Positives = 94/289 (32%), Gaps = 24/289 (8%)
Query: 386 NLKHINLSHSEHLTKIPDLSLA--TNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCR 443
+ ++L ++ +T+I D NL +L + + L KL L L +
Sbjct: 32 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 444 SLTSLSTSI-----HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERL 498
L L + L + I ++ + +E + + + + +
Sbjct: 91 -LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 499 SSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLG 558
L + + + + +P + SL L+L +G I +V ++ LK L
Sbjct: 150 KKLSYIRIADT-NITTIPQGL--PPSLTELHL---------DGNKITKVDAA--SLKGLN 195
Query: 559 RLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE 618
L+ + + L L L + ++++P L ++ L NN
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255
Query: 619 RIPESIIQLSHLFSLGISHCE-RLHSLPELPCDLSDIEAHCCSSLEALS 666
I + + S+ L S P ++ C A+
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.8 bits (94), Expect = 5e-04
Identities = 41/266 (15%), Positives = 82/266 (30%), Gaps = 51/266 (19%)
Query: 475 SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNLAEA 533
C++ + +++ P + LL+L N ++ + LK+L L L
Sbjct: 9 QCHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN 65
Query: 534 ---------------LKELKAEGIAIREVPSSIACLK--------NLGRLSFESFMCHEQ 570
L+ L ++E+P + + ++ F Q
Sbjct: 66 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125
Query: 571 MGLLLPISF-------------GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNF 617
M ++ + G+ L+Y+R+ D I +P+ G S + L L+ N
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKI 183
Query: 618 E-RIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTS 676
S+ L++L LG+S L L + +
Sbjct: 184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA--------NTPHLRELHLNNNKLVKVP 235
Query: 677 WNSQFFYFVNCFKLDKNELKEIIKDA 702
++ L N + I +
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSND 261
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 49.8 bits (117), Expect = 8e-07
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE 473
+ E S L LN+ + + L L L++LI S +L PE
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALP--PRLERLIASFN-HLAEVPE 321
Query: 474 LSCNIEELSLDGTAIQEFPSSIERLSSL 501
L N+++L ++ ++EFP E + L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 47.5 bits (111), Expect = 4e-06
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 565 FMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI 624
+ + + + SL L +++ +IELP +L L+ N+ +PE
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEVPELP 323
Query: 625 IQLSHLFSLGISHCERLHSLPELPCDLSDI 654
L L + + L P++P + D+
Sbjct: 324 QNLKQLH---VEYN-PLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 453 HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRL 512
SL++L +S L+ P L +E L + E P + L L++ L
Sbjct: 282 LPPSLEELNVSNN-KLIELPALPPRLERLIASFNHLAEVPELPQNLKQ---LHVEYN-PL 336
Query: 513 EGLPSKICKLKSLERLN 529
P ++ L R+N
Sbjct: 337 REFPDIPESVEDL-RMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 3e-04
Identities = 22/208 (10%), Positives = 44/208 (21%), Gaps = 3/208 (1%)
Query: 582 TSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERL 641
L L + G+ LPE L S L+ N+ +PE L L +
Sbjct: 38 RQAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 642 HSLPELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQFFYFVNCFKLDKNELKEIIKD 701
P L S + + + + + +++
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154
Query: 702 AQRKMQLKATAWWEELEKQHCEVPRGMICFPGSELPEWFMFQSMGSSATFNLPPDWFSYN 761
L ++P + + + L + N
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214
Query: 762 FVGFALCAVVGFRDHHDDGGGFQVFCEC 789
+ + E
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPEL 242
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 8e-05
Identities = 34/255 (13%), Positives = 74/255 (29%), Gaps = 9/255 (3%)
Query: 432 NKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCS----NLMSFPELSCNIEELSLDGTA 487
++ L+ ++ + LS L ++ LSL+G
Sbjct: 23 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82
Query: 488 IQ-EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIRE 546
+ +++ + S+L+ LNL C + S RL+ ++
Sbjct: 83 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQV 141
Query: 547 VPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSS 606
+ ++ LS + L L + + + QL+
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 201
Query: 607 RSILLLEKNNF--ERIPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAHCCS-SLE 663
L L + + ++ L +L + +L L L ++ +C +
Sbjct: 202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI 261
Query: 664 ALSGLSILFTQTSWN 678
A + Q W
Sbjct: 262 ARPTIGNKKNQEIWG 276
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 358 KIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNF 415
++ + +++ P S + Q ++H++LS+S LS + L++L+
Sbjct: 19 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78
Query: 416 QGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKL 460
+G +++ + LV LNL C + + L S +L
Sbjct: 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 3/153 (1%)
Query: 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLET 424
V L I+++ + L KH+ LS ++ KI LS NL L+
Sbjct: 28 VELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKISSLSGMENLRILSLGRNLIKKIE 86
Query: 425 HSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSC--NIEELS 482
+ + + + S + + + + +N +L+ +E+L
Sbjct: 87 NLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146
Query: 483 LDGTAIQEFPSSIERLSSLILLNLGNCLRLEGL 515
L G + S + + L+ L
Sbjct: 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (85), Expect = 0.003
Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 8/153 (5%)
Query: 368 EMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSS 427
E+ ++QL + + + L L PDL LN +
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLK-GLRSDPDLVAQNIDVVLNRRSS-MAATLRII 60
Query: 428 IQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSN--LMSFPELS----CNIEEL 481
+ + +L+ LNL + R S + L + S L S EL +EEL
Sbjct: 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120
Query: 482 SLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG 514
LDG ++ + S I LRL+G
Sbjct: 121 WLDGNSLSDTFRDQSTYISAIRERFPKLLRLDG 153
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 909 | |||
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 99.94 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.84 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.84 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.82 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.81 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.77 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.76 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.72 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.7 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.65 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.65 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.64 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.61 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.49 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.43 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.42 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.42 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.41 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.4 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.34 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.13 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.13 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.1 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.07 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.03 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.01 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.01 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.96 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.84 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.81 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.76 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.64 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.58 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.48 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.8 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.56 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 95.51 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 94.85 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.41 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.91 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 91.32 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.87 |
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.94 E-value=2.1e-27 Score=250.75 Aligned_cols=151 Identities=18% Similarity=0.197 Sum_probs=136.8
Q ss_pred hHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhhcCCC-cEEECCCCCHHHHHHHHHHhh
Q 039311 40 LNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNCGVD-TIYEVKELFDDDARMLFSRYA 118 (909)
Q Consensus 40 ~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~-~~y~l~~L~~~es~~LF~~~a 118 (909)
...+.+.|.+||+|+||||||+.++|+.+.. .|||||||||+++|+..+..+ .+|+|++|+.+|||+||+++|
T Consensus 125 ~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 198 (277)
T d2a5yb3 125 RMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYG 198 (277)
T ss_dssp HHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred HHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHh
Confidence 4467888999999999999999999987653 589999999999999988665 689999999999999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhhee
Q 039311 119 FGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLD 197 (909)
Q Consensus 119 f~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~ 197 (909)
|....+ +...+++++||++|+|+||||+++|+.|++++.++|.+..++|++....++..++++||++||+++|.||-+
T Consensus 199 ~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~c~~~ 276 (277)
T d2a5yb3 199 MPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEV 276 (277)
T ss_dssp CCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHT
T ss_pred CCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHHHHHh
Confidence 976544 457899999999999999999999999999999999999999988888899999999999999999999954
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.84 E-value=6.2e-20 Score=203.43 Aligned_cols=318 Identities=20% Similarity=0.277 Sum_probs=207.1
Q ss_pred CCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCC
Q 039311 310 NMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLK 388 (909)
Q Consensus 310 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~ 388 (909)
.+.+|+.|++.++.+. ..++++ +++|++|++++|.++.+|..-.+.+|++|++++|.+..++. +..+++|+
T Consensus 42 ~l~~l~~L~l~~~~I~-------~l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~ 113 (384)
T d2omza2 42 DLDQVTTLQADRLGIK-------SIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLT 113 (384)
T ss_dssp HHTTCCEEECCSSCCC-------CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred HhCCCCEEECCCCCCC-------CccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccccccc
Confidence 4567888888766432 234455 77888888888888888765577888888888888887764 77888888
Q ss_pred EEecCCCcCCCcCCCCCccccccccccccccccce-------------------ecccccCCCcccEeccccccCccccC
Q 039311 389 HINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE-------------------THSSIQYLNKLVVLNLKHCRSLTSLS 449 (909)
Q Consensus 389 ~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~-------------------~p~~i~~L~~L~~L~L~~c~~l~~lp 449 (909)
.|+++++.... ++.......+..+....+..... ....+.............+. .....
T Consensus 114 ~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 191 (384)
T d2omza2 114 GLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDIS 191 (384)
T ss_dssp EEECCSSCCCC-CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCG
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc-ccccc
Confidence 88888776443 22223333333333332211100 00111122222222222211 11222
Q ss_pred ccccCCcCcEEEccCCCCCcccC-ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCee
Q 039311 450 TSIHLGSLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERL 528 (909)
Q Consensus 450 ~~~~l~~L~~L~Ls~c~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L 528 (909)
....+++++.+.+++|......| ....+|++|++++|.++.+| .+..+++|+.|++++|.. ..++. ++.+++|+.|
T Consensus 192 ~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l-~~~~~-~~~~~~L~~L 268 (384)
T d2omza2 192 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI-SNLAP-LSGLTKLTEL 268 (384)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCSEE
T ss_pred ccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCcc-CCCCc-ccccccCCEe
Confidence 22357888999998875444333 23467889999999888875 578889999999999864 34443 7788888888
Q ss_pred ecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCc
Q 039311 529 NLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRS 608 (909)
Q Consensus 529 ~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~ 608 (909)
++. ++.+..++. +..++.++.+.+..+... .++.+..+++++.|++++|++.+++. +..+++|+
T Consensus 269 ~l~---------~~~l~~~~~-~~~~~~l~~l~~~~n~l~-----~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~ 332 (384)
T d2omza2 269 KLG---------ANQISNISP-LAGLTALTNLELNENQLE-----DISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQ 332 (384)
T ss_dssp ECC---------SSCCCCCGG-GTTCTTCSEEECCSSCCS-----CCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCC
T ss_pred ecc---------CcccCCCCc-cccccccccccccccccc-----cccccchhcccCeEECCCCCCCCCcc-cccCCCCC
Confidence 773 344455543 667778888887763222 13345667888999999998888753 77888999
Q ss_pred EEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC--CCCCcCceeccc
Q 039311 609 ILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE--LPCDLSDIEAHC 658 (909)
Q Consensus 609 ~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--l~~sL~~L~i~~ 658 (909)
.|++++|+++.++ .+..+++|++|++++| .++.++. -.++|+.|++++
T Consensus 333 ~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~ 382 (384)
T d2omza2 333 RLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLND 382 (384)
T ss_dssp EEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCC
T ss_pred EEECCCCCCCCCh-hHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCC
Confidence 9999999888877 5888899999999876 4666653 234566666654
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.84 E-value=1.5e-19 Score=200.35 Aligned_cols=302 Identities=20% Similarity=0.232 Sum_probs=218.8
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC 418 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 418 (909)
+.+|+.|+++++.++++++.-.+++|++|++++|+|+.++. ++++++|++|++++|.+. .++.++.+++|+.|++.++
T Consensus 43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~-~i~~l~~l~~L~~L~~~~~ 120 (384)
T d2omza2 43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNN 120 (384)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS
T ss_pred hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccc-ccccccccccccccccccc
Confidence 56899999999999999755588999999999999999985 899999999999999854 5666899999999999887
Q ss_pred cccceecccccCCCcccEeccccccC--------------------ccccCccccCCcCcEEEccCCCCC-cccCccccC
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRS--------------------LTSLSTSIHLGSLKKLILSGCSNL-MSFPELSCN 477 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~--------------------l~~lp~~~~l~~L~~L~Ls~c~~l-~~lp~~~~~ 477 (909)
......+ ......+..+....+.. ...+................+... ........+
T Consensus 121 ~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (384)
T d2omza2 121 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198 (384)
T ss_dssp CCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred ccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence 6443222 22333333333322110 000000011223333333332221 122234567
Q ss_pred cceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCC
Q 039311 478 IEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNL 557 (909)
Q Consensus 478 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L 557 (909)
++.+.++++.+..++. ....++|+.|++++|.. ..++ .+..+++|+.|++ .++.+..++. ++.+++|
T Consensus 199 ~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l---------~~n~l~~~~~-~~~~~~L 265 (384)
T d2omza2 199 LESLIATNNQISDITP-LGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDL---------ANNQISNLAP-LSGLTKL 265 (384)
T ss_dssp CSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEEC---------CSSCCCCCGG-GTTCTTC
T ss_pred cceeeccCCccCCCCc-ccccCCCCEEECCCCCC-CCcc-hhhcccccchhcc---------ccCccCCCCc-ccccccC
Confidence 8999999999998865 57789999999999854 4444 5778888888877 4455555554 7889999
Q ss_pred CeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecC
Q 039311 558 GRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 558 ~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 637 (909)
+.|+++++... .++.+..++.++.+.++.|.+..++ .+..+++++.|++++|+++.++ .+..+++|++|++++
T Consensus 266 ~~L~l~~~~l~-----~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~ 338 (384)
T d2omza2 266 TELKLGANQIS-----NISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFAN 338 (384)
T ss_dssp SEEECCSSCCC-----CCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCS
T ss_pred CEeeccCcccC-----CCCcccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCC
Confidence 99999874433 2345677899999999999988764 4788999999999999999887 488999999999999
Q ss_pred CCCCcccCC--CCCCcCceecccCccccccc
Q 039311 638 CERLHSLPE--LPCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 638 c~~L~~lp~--l~~sL~~L~i~~C~~L~~l~ 666 (909)
| .++.++. -.++|+.|++.+| .++.++
T Consensus 339 n-~l~~l~~l~~l~~L~~L~l~~N-~l~~l~ 367 (384)
T d2omza2 339 N-KVSDVSSLANLTNINWLSAGHN-QISDLT 367 (384)
T ss_dssp S-CCCCCGGGGGCTTCCEEECCSS-CCCBCG
T ss_pred C-CCCCChhHcCCCCCCEEECCCC-cCCCCh
Confidence 8 5666654 2458999999877 566654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.82 E-value=1.5e-20 Score=202.74 Aligned_cols=249 Identities=18% Similarity=0.167 Sum_probs=151.6
Q ss_pred CeeEEEcCCCCcc---ccccccccCCCCCEEecCC-CcCCCcCCC-CCccccccccccccccccceecccccCCCcccEe
Q 039311 363 NLVSLEMPHSSIK---QLWKGVQRLVNLKHINLSH-SEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVL 437 (909)
Q Consensus 363 ~L~~L~L~~~~i~---~lp~~~~~L~~L~~L~Ls~-~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L 437 (909)
+++.|+|+++++. .+|.++++|++|++|+|++ |.+.+.+|. ++++++|++|++++|......+..+..+.+|+++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 4555555555544 4667777777777777775 455556664 7777777777777776666666667777777777
Q ss_pred ccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCC-CEEeccCCCCCCcC
Q 039311 438 NLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSL-ILLNLGNCLRLEGL 515 (909)
Q Consensus 438 ~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L-~~L~L~~c~~l~~l 515 (909)
++++|.....+|..+ +++.|+.+++++|...+.+| ..+..+..+ +.+.+++|...+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip--------------------~~~~~l~~l~~~l~~~~n~l~~~~ 190 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP--------------------DSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC--------------------GGGGCCCTTCCEEECCSSEEEEEC
T ss_pred ccccccccccCchhhccCcccceeeccccccccccc--------------------cccccccccccccccccccccccc
Confidence 777766666666555 46677777766655444444 333333332 44444444443344
Q ss_pred cccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC
Q 039311 516 PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII 595 (909)
Q Consensus 516 p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~ 595 (909)
|..++.+..+ .+++.. ......+|..++.+++|+.+++.++ .+ ...++.+..+++|+.|+|++|++.
T Consensus 191 ~~~~~~l~~~-~l~l~~--------~~~~~~~~~~~~~~~~l~~l~~~~~---~l-~~~~~~~~~~~~L~~L~Ls~N~l~ 257 (313)
T d1ogqa_ 191 PPTFANLNLA-FVDLSR--------NMLEGDASVLFGSDKNTQKIHLAKN---SL-AFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CGGGGGCCCS-EEECCS--------SEEEECCGGGCCTTSCCSEEECCSS---EE-CCBGGGCCCCTTCCEEECCSSCCE
T ss_pred cccccccccc-cccccc--------ccccccccccccccccccccccccc---cc-cccccccccccccccccCccCeec
Confidence 4433333222 232211 1112233444455555555555541 11 223445666778888888888888
Q ss_pred -CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEEeecCCCCCcccC
Q 039311 596 -ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 596 -~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
.+|.+++++++|+.|+|++|+++ .+| .++.+++|+.+++++|+.+...|
T Consensus 258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred ccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence 68888888888888888888888 677 45677788888888877665443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.81 E-value=1.3e-18 Score=186.37 Aligned_cols=261 Identities=18% Similarity=0.198 Sum_probs=171.5
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
.++.++.++..++++|..++ .++++|+|++|+|+++|+ .+.++++|++|++++|.+....|+ +..+++|++|++++|
T Consensus 11 ~~~~~~C~~~~L~~lP~~l~-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n 89 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89 (305)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEEecCCCCCccCCCCC-CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence 46788999999999999874 689999999999999996 588999999999999998877675 889999999999987
Q ss_pred cccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIE 496 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~ 496 (909)
. +..+|..+ ...|+.|.+.++. +..++... ....+..+....+...... ..+..+.
T Consensus 90 ~-l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~------------------~~~~~~~ 147 (305)
T d1xkua_ 90 Q-LKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG------------------IENGAFQ 147 (305)
T ss_dssp C-CSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG------------------BCTTGGG
T ss_pred c-cCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccC------------------CCccccc
Confidence 5 45566543 3577788877743 44544432 3555666666554322111 1223344
Q ss_pred cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCccee-ecCccccccCCCCeeecCcccccccccccc
Q 039311 497 RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLL 575 (909)
Q Consensus 497 ~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 575 (909)
.+++|+.+++.+|.. ..+|.. .+++|+.|++. ++... ..+..+..++.++.|.+++| .+.....
T Consensus 148 ~l~~L~~l~l~~n~l-~~l~~~--~~~~L~~L~l~---------~n~~~~~~~~~~~~~~~l~~L~~s~n---~l~~~~~ 212 (305)
T d1xkua_ 148 GMKKLSYIRIADTNI-TTIPQG--LPPSLTELHLD---------GNKITKVDAASLKGLNNLAKLGLSFN---SISAVDN 212 (305)
T ss_dssp GCTTCCEEECCSSCC-CSCCSS--CCTTCSEEECT---------TSCCCEECTGGGTTCTTCCEEECCSS---CCCEECT
T ss_pred cccccCccccccCCc-cccCcc--cCCccCEEECC---------CCcCCCCChhHhhccccccccccccc---ccccccc
Confidence 555556666555532 223322 13444444442 22222 22334555555566655542 2222223
Q ss_pred CccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchh-------hccCCCCCEEeecCCC
Q 039311 576 PISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPES-------IIQLSHLFSLGISHCE 639 (909)
Q Consensus 576 ~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-------i~~l~~L~~L~L~~c~ 639 (909)
..+.++++|++|+|++|.+.++|.++..+++|+.|+|++|+++.++.. ...+++|+.|+|++|+
T Consensus 213 ~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 213 GSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp TTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 335567788888888888888888888888888888888888877542 2346678888888765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.77 E-value=1.4e-18 Score=186.98 Aligned_cols=249 Identities=16% Similarity=0.148 Sum_probs=184.7
Q ss_pred CCCCEEecCCCcCCC--cCCC-CCccccccccccccc-cccceecccccCCCcccEeccccccCccccCccc-cCCcCcE
Q 039311 385 VNLKHINLSHSEHLT--KIPD-LSLATNLESLNFQGC-TCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKK 459 (909)
Q Consensus 385 ~~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~c-~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 459 (909)
.+++.|+|+++...+ .+|. ++++++|++|+|++| ...+.+|.+++++++|++|+|++|......+..+ .+.+|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 468888998887655 3444 888888888888874 4555788888888888888888865443333333 4677777
Q ss_pred EEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCC-Ceeeccccccccc
Q 039311 460 LILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSL-ERLNLAEALKELK 538 (909)
Q Consensus 460 L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L-~~L~l~~~l~~L~ 538 (909)
+++++|... ..+|.++++++.|+.+++++|...+.+|..+..+..+ +.+.+
T Consensus 130 l~l~~N~~~--------------------~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~-------- 181 (313)
T d1ogqa_ 130 LDFSYNALS--------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI-------- 181 (313)
T ss_dssp EECCSSEEE--------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEEC--------
T ss_pred ccccccccc--------------------ccCchhhccCcccceeecccccccccccccccccccccccccc--------
Confidence 777664322 2567889999999999999998888999999888876 55554
Q ss_pred ccCccee-ecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCC
Q 039311 539 AEGIAIR-EVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNF 617 (909)
Q Consensus 539 l~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l 617 (909)
.++.+. ..|..+..+.. ..+++..+ ...+........+++|+.|++++|.+...+..++.+++|+.|+|++|++
T Consensus 182 -~~n~l~~~~~~~~~~l~~-~~l~l~~~---~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l 256 (313)
T d1ogqa_ 182 -SRNRLTGKIPPTFANLNL-AFVDLSRN---MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp -CSSEEEEECCGGGGGCCC-SEEECCSS---EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred -cccccccccccccccccc-cccccccc---cccccccccccccccccccccccccccccccccccccccccccCccCee
Confidence 445554 34555555544 46777652 2222233346678999999999999987777899999999999999999
Q ss_pred e-ecchhhccCCCCCEEeecCCCCCcccCCC--CCCcCceecccCccccccc
Q 039311 618 E-RIPESIIQLSHLFSLGISHCERLHSLPEL--PCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 618 ~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l--~~sL~~L~i~~C~~L~~l~ 666 (909)
+ .+|..+.++++|++|+|++|..-..+|+. ..+|+.+++.+.+.|...|
T Consensus 257 ~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~p 308 (313)
T d1ogqa_ 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred cccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCC
Confidence 9 89999999999999999998644488874 3467777777776665543
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.76 E-value=7.5e-17 Score=175.74 Aligned_cols=301 Identities=19% Similarity=0.220 Sum_probs=186.9
Q ss_pred CCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEec
Q 039311 313 KLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINL 392 (909)
Q Consensus 313 ~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L 392 (909)
+++.|+++++.+...+ . .+++|++|++++|.++.+|..+ .+|+.|+++++.++.++.- .+.|++|++
T Consensus 39 ~l~~LdLs~~~L~~lp------~--~~~~L~~L~Ls~N~l~~lp~~~--~~L~~L~l~~n~l~~l~~l---p~~L~~L~L 105 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLP------E--LPPHLESLVASCNSLTELPELP--QSLKSLLVDNNNLKALSDL---PPLLEYLGV 105 (353)
T ss_dssp TCSEEECTTSCCSCCC------S--CCTTCSEEECCSSCCSSCCCCC--TTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred CCCEEEeCCCCCCCCC------C--CCCCCCEEECCCCCCcccccch--hhhhhhhhhhcccchhhhh---ccccccccc
Confidence 5777787766543221 1 1468899999999999998764 5899999999988877642 246899999
Q ss_pred CCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC
Q 039311 393 SHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP 472 (909)
Q Consensus 393 s~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp 472 (909)
++|. +..+|.++.+++|++|++++|... ..+.. ...+..+.+..+.. ........++.++.|.++++.. ..++
T Consensus 106 ~~n~-l~~lp~~~~l~~L~~L~l~~~~~~-~~~~~---~~~l~~l~~~~~~~-~~~~~l~~l~~l~~L~l~~n~~-~~~~ 178 (353)
T d1jl5a_ 106 SNNQ-LEKLPELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQL-EELPELQNLPFLTAIYADNNSL-KKLP 178 (353)
T ss_dssp CSSC-CSSCCCCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCC-SSCC
T ss_pred cccc-cccccchhhhccceeecccccccc-ccccc---cccccchhhccccc-cccccccccccceecccccccc-cccc
Confidence 9887 456778888999999999887543 33333 34556666655432 2222223578888898887654 3445
Q ss_pred ccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCcccc
Q 039311 473 ELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIA 552 (909)
Q Consensus 473 ~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~ 552 (909)
......+.+...++.+..+|. +..++.|+.+++++|.. ..+|.. ..++..+.+.. +.+...+..
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~-~~~~~~---~~~l~~~~~~~---------~~~~~~~~~-- 242 (353)
T d1jl5a_ 179 DLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL-KTLPDL---PPSLEALNVRD---------NYLTDLPEL-- 242 (353)
T ss_dssp CCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCSC---CTTCCEEECCS---------SCCSCCCCC--
T ss_pred ccccccccccccccccccccc-ccccccccccccccccc-cccccc---ccccccccccc---------ccccccccc--
Confidence 555556677777776666654 56788899999988743 334432 23344443321 111111111
Q ss_pred ccCCCCeeecCccccccc------------cccccCc-cCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCee
Q 039311 553 CLKNLGRLSFESFMCHEQ------------MGLLLPI-SFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFER 619 (909)
Q Consensus 553 ~l~~L~~L~l~~~~~~~~------------~~~~~~~-~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~ 619 (909)
...+....+..+.+..+ ....+.. ...+++|++|+|++|++.++|.. +++|+.|+|++|+++.
T Consensus 243 -~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~ 318 (353)
T d1jl5a_ 243 -PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAE 318 (353)
T ss_dssp -CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC
T ss_pred -cccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCc
Confidence 11122222211111110 0011111 12356788888888887777743 5678888888888887
Q ss_pred cchhhccCCCCCEEeecCCCCCcccCCCCCCcCceecc
Q 039311 620 IPESIIQLSHLFSLGISHCERLHSLPELPCDLSDIEAH 657 (909)
Q Consensus 620 lp~~i~~l~~L~~L~L~~c~~L~~lp~l~~sL~~L~i~ 657 (909)
+|.. +++|+.|+|++|+ ++++|++|.+|+.|.+.
T Consensus 319 l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~ 352 (353)
T d1jl5a_ 319 VPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLRMN 352 (353)
T ss_dssp CCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred cccc---cCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence 7743 4578888888875 77888888778777664
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.72 E-value=3e-16 Score=167.80 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=148.5
Q ss_pred CCCccEEEeeCCCCCccCC-CC-CCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCCCCcccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSS-KI-PPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNF 415 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L 415 (909)
++.+++|++++|.++.+|. .| .+.+|++|+++++.+..++ ..+.++++|++|++++|++ +.+|. .....|+.|.+
T Consensus 30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l-~~l~~-~~~~~l~~L~~ 107 (305)
T d1xkua_ 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPE-KMPKTLQELRV 107 (305)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCS-SCCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc-CcCcc-chhhhhhhhhc
Confidence 4679999999999999986 45 7889999999999999884 5688999999999999974 44554 23467888888
Q ss_pred ccccccceecccccCCCcccEeccccccCcccc--Cccc-cCCcCcEEEccCCCCCcccCc-cccCcceeeccccCccc-
Q 039311 416 QGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSL--STSI-HLGSLKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQE- 490 (909)
Q Consensus 416 ~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~l--p~~~-~l~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~- 490 (909)
.++......+..+.....+..++...+...... +..+ .+++|+.+++++|... .+|. ...++++|+++++.+..
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~L~~L~l~~n~~~~~ 186 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKV 186 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEE
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcccCCccCEEECCCCcCCCC
Confidence 887655444445566777788887765432221 2222 4677888877775432 2322 33445555555554442
Q ss_pred cCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccc
Q 039311 491 FPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQ 570 (909)
Q Consensus 491 lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 570 (909)
.+..+.+++.++.|++++|......+.. +..+++|+.|++++|. +
T Consensus 187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~--------------------------------~~~l~~L~~L~L~~N~---L 231 (305)
T d1xkua_ 187 DAASLKGLNNLAKLGLSFNSISAVDNGS--------------------------------LANTPHLRELHLNNNK---L 231 (305)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTT--------------------------------GGGSTTCCEEECCSSC---C
T ss_pred ChhHhhcccccccccccccccccccccc--------------------------------ccccccceeeeccccc---c
Confidence 2334445555555555554333333333 4444555555555422 1
Q ss_pred cccccCccCCCCCCCEEecCCCCCCCccc-------ccCCCCCCcEEECCCCCCe
Q 039311 571 MGLLLPISFGLTSLTYLRLTDCGIIELPE-------CLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 571 ~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~-------~l~~l~~L~~L~L~~n~l~ 618 (909)
.. .++.+..+++|+.|+|++|++..++. ....+++|+.|+|++|.+.
T Consensus 232 ~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 232 VK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp SS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cc-cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 11 12234456666666666666665432 2345677788888887766
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.70 E-value=1e-15 Score=166.49 Aligned_cols=292 Identities=20% Similarity=0.188 Sum_probs=193.9
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
.+++.|+++++.++.+|.. +.+|++|++++|+|+.+|..+ .+|+.|++++|.+ +.++++. +.|++|++++|.
T Consensus 38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l-~~l~~lp--~~L~~L~L~~n~ 109 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNL-KALSDLP--PLLEYLGVSNNQ 109 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCC-SCCCSCC--TTCCEEECCSSC
T ss_pred cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccch---hhhhhhhhhhccc-chhhhhc--cccccccccccc
Confidence 4688999999999999974 468999999999999999754 5789999998864 4455432 469999999876
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCccc-CccccCcceeeccccCccccCcccccC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSF-PELSCNIEELSLDGTAIQEFPSSIERL 498 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~l-p~~~~~L~~L~L~~~~i~~lp~~i~~l 498 (909)
+..+| .++.+++|++|++++|. +...+. ....+..+.+..+...... ......++.|.+.++.+..++...
T Consensus 110 -l~~lp-~~~~l~~L~~L~l~~~~-~~~~~~--~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~--- 181 (353)
T d1jl5a_ 110 -LEKLP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP--- 181 (353)
T ss_dssp -CSSCC-CCTTCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---
T ss_pred -ccccc-chhhhccceeecccccc-cccccc--ccccccchhhccccccccccccccccceeccccccccccccccc---
Confidence 45666 46889999999998864 333333 2466777777665443221 123456778888888877665433
Q ss_pred CCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccccccc---
Q 039311 499 SSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLL--- 575 (909)
Q Consensus 499 ~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~--- 575 (909)
...+.+...++ ....+|. ...++.|+.+++. ++....++.. ..++..+.+.++.+........
T Consensus 182 ~~~~~l~~~~~-~~~~~~~-~~~l~~L~~l~l~---------~n~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~ 247 (353)
T d1jl5a_ 182 LSLESIVAGNN-ILEELPE-LQNLPFLTTIYAD---------NNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLT 247 (353)
T ss_dssp TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECC---------SSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred ccccccccccc-ccccccc-ccccccccccccc---------cccccccccc---ccccccccccccccccccccccccc
Confidence 23344554443 3344443 5677788877763 3344444432 3455666665533322211000
Q ss_pred ---------CccCC-CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 576 ---------PISFG-LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 576 ---------~~~~~-l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
..+.. .......++..+.+..+ ...+++|++|+|++|+++.+|.. +++|+.|+|++| .++++|
T Consensus 248 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~ 320 (353)
T d1jl5a_ 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSL---CDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVP 320 (353)
T ss_dssp EEECCSSCCSEESCCCTTCCEEECCSSCCSEE---CCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCC
T ss_pred ccccccccccccccccchhcccccccCccccc---cccCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccc
Confidence 00000 11223333333333322 24468999999999999999954 689999999987 589999
Q ss_pred CCCCCcCceecccCcccccccCcc
Q 039311 646 ELPCDLSDIEAHCCSSLEALSGLS 669 (909)
Q Consensus 646 ~l~~sL~~L~i~~C~~L~~l~~~~ 669 (909)
+.+.+|++|++++|+ |+++|..+
T Consensus 321 ~~~~~L~~L~L~~N~-L~~lp~~~ 343 (353)
T d1jl5a_ 321 ELPQNLKQLHVEYNP-LREFPDIP 343 (353)
T ss_dssp CCCTTCCEEECCSSC-CSSCCCCC
T ss_pred cccCCCCEEECcCCc-CCCCCccc
Confidence 999999999999997 99988754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.1e-15 Score=157.57 Aligned_cols=174 Identities=22% Similarity=0.233 Sum_probs=97.3
Q ss_pred cccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCc
Q 039311 409 NLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAI 488 (909)
Q Consensus 409 ~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i 488 (909)
+|++|+|++|....-.+..+..+++|++|+|++| .++.+|....+++|++|++++ |.+
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~---------------------N~l 89 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSH---------------------NQL 89 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCS---------------------SCC
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccccccccccccccccc---------------------ccc
Confidence 3444444444322222234556666666666664 344554433445555554444 444
Q ss_pred cccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccc
Q 039311 489 QEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCH 568 (909)
Q Consensus 489 ~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 568 (909)
...+..+..+++|+.|++++|......+..+..+.+++.|++ .++.+..+|.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l---------~~n~l~~l~~------------------- 141 (266)
T d1p9ag_ 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL---------KGNELKTLPP------------------- 141 (266)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC---------TTSCCCCCCT-------------------
T ss_pred cccccccccccccccccccccccceeeccccccccccccccc---------cccccceecc-------------------
Confidence 445556666777777777776554444444455555555544 2222222222
Q ss_pred cccccccCccCCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 569 EQMGLLLPISFGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 569 ~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
..+..+++|+.|++++|++..++ ..+..+++|+.|+|++|+++.+|.++..+++|+.|+|++|+
T Consensus 142 -------~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 142 -------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp -------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred -------ccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence 12334566777777777776654 34566777777777777777777777777777777777664
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.3e-15 Score=159.16 Aligned_cols=192 Identities=19% Similarity=0.196 Sum_probs=124.9
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
.+...+.+++.++.+|..++ .+|++|+|++|.|+.+|. .+.++++|++|+|++|.+ +.+|.++.+++|++|++++|.
T Consensus 11 ~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~Ls~N~ 88 (266)
T d1p9ag_ 11 SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQ 88 (266)
T ss_dssp TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSSC
T ss_pred CCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-ccccccccccccccccccccc
Confidence 44556788888999998775 689999999999999884 578899999999999864 566777888889999988875
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcc-ccc
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS-IER 497 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~-i~~ 497 (909)
+...+..+..+++|+.|+++++......+... .+.+++.|++++ |.+..+|.. +..
T Consensus 89 -l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~---------------------n~l~~l~~~~~~~ 146 (266)
T d1p9ag_ 89 -LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG---------------------NELKTLPPGLLTP 146 (266)
T ss_dssp -CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT---------------------SCCCCCCTTTTTT
T ss_pred -ccccccccccccccccccccccccceeeccccccccccccccccc---------------------cccceeccccccc
Confidence 44556677788888888888765332222222 355666665555 444444333 344
Q ss_pred CCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcc
Q 039311 498 LSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESF 565 (909)
Q Consensus 498 l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~ 565 (909)
+++|+.|++++|......+..+..+++|+.|++ ++|.++.+|.++..+++|+.|++++|
T Consensus 147 l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L---------s~N~L~~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLL---------QENSLYTIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC---------CSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cccchhcccccccccccCccccccccccceeec---------ccCCCcccChhHCCCCCCCEEEecCC
Confidence 566666666665444333344555555555554 33445555555555555555555543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.8e-16 Score=165.11 Aligned_cols=216 Identities=21% Similarity=0.196 Sum_probs=129.5
Q ss_pred EEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccc
Q 039311 345 LQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLL 422 (909)
Q Consensus 345 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 422 (909)
+..++..++++|..++ .++++|+|++|+|+++|. .+.++++|++|+++++.+....+. +..++.++.+....+..+.
T Consensus 16 v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~ 94 (284)
T d1ozna_ 16 TSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (284)
T ss_dssp EECCSSCCSSCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EEcCCCCCCccCCCCC-CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 4556777888887764 568889999999988885 478888888888888875554444 5566777776665544444
Q ss_pred ee-cccccCCCcccEeccccccCccccCcc-c-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccC
Q 039311 423 ET-HSSIQYLNKLVVLNLKHCRSLTSLSTS-I-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERL 498 (909)
Q Consensus 423 ~~-p~~i~~L~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l 498 (909)
.+ +..++.+++|++|++++|.. ..++.. . ...+|+.+++ ++|.++.+|. .+..+
T Consensus 95 ~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~L~~l~l---------------------~~N~l~~i~~~~f~~~ 152 (284)
T d1ozna_ 95 SVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYL---------------------QDNALQALPDDTFRDL 152 (284)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEEC---------------------CSSCCCCCCTTTTTTC
T ss_pred cccchhhcccccCCEEecCCccc-ccccccccchhcccchhhh---------------------ccccccccChhHhccc
Confidence 44 44566666666666666442 222221 1 2344444444 4445555542 34556
Q ss_pred CCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCcc
Q 039311 499 SSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPIS 578 (909)
Q Consensus 499 ~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 578 (909)
++|+.|++++|......+..+..+++|+.+ .+++| ++.......+
T Consensus 153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l--------------------------------~l~~N---~l~~i~~~~f 197 (284)
T d1ozna_ 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRL--------------------------------LLHQN---RVAHVHPHAF 197 (284)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEE--------------------------------ECCSS---CCCEECTTTT
T ss_pred cchhhcccccCcccccchhhhccccccchh--------------------------------hhhhc---cccccChhHh
Confidence 666666666654322222333444444444 44331 1222223335
Q ss_pred CCCCCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCe
Q 039311 579 FGLTSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 579 ~~l~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~ 618 (909)
..+++|+.|++++|.+..++ ..++.+++|+.|++++|.+.
T Consensus 198 ~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred hhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence 55677777777778777654 46777888888888888766
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.2e-14 Score=153.23 Aligned_cols=218 Identities=22% Similarity=0.229 Sum_probs=131.9
Q ss_pred EEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccC
Q 039311 366 SLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRS 444 (909)
Q Consensus 366 ~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~ 444 (909)
.++.++.+++++|..+. ..+++|+|++|.+.+..+. +.++++|++|+++++......+..+..+..++.+....+..
T Consensus 15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 34566667777776553 4677778877765433332 66666677776666554433344444455555554444444
Q ss_pred ccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCC
Q 039311 445 LTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKS 524 (909)
Q Consensus 445 l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~ 524 (909)
++.++. ..+.++++|+.|++++|......+..+..+++
T Consensus 93 ~~~l~~------------------------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 130 (284)
T d1ozna_ 93 LRSVDP------------------------------------------ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130 (284)
T ss_dssp CCCCCT------------------------------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccc------------------------------------------hhhcccccCCEEecCCcccccccccccchhcc
Confidence 443322 22334444444444444332222233334444
Q ss_pred CCeeecccccccccccCcceeecCc-cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccC
Q 039311 525 LERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLG 602 (909)
Q Consensus 525 L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~ 602 (909)
|+.+++ .++.++.+|. .+..+++|+.|++++| ++.......+.++++|+.+++++|.+..+ |..+.
T Consensus 131 L~~l~l---------~~N~l~~i~~~~f~~~~~L~~L~l~~N---~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~ 198 (284)
T d1ozna_ 131 LQYLYL---------QDNALQALPDDTFRDLGNLTHLFLHGN---RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (284)
T ss_dssp CCEEEC---------CSSCCCCCCTTTTTTCTTCCEEECCSS---CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred cchhhh---------ccccccccChhHhccccchhhcccccC---cccccchhhhccccccchhhhhhccccccChhHhh
Confidence 444443 2333444432 3445566666666652 23322334466789999999999999874 78899
Q ss_pred CCCCCcEEECCCCCCeecc-hhhccCCCCCEEeecCCC
Q 039311 603 QLSSRSILLLEKNNFERIP-ESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 603 ~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~c~ 639 (909)
.+++|+.|++++|++..++ ..+..+++|+.|+|++++
T Consensus 199 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (284)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hhhhcccccccccccccccccccccccccCEEEecCCC
Confidence 9999999999999999766 467899999999999875
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1e-13 Score=142.38 Aligned_cols=186 Identities=22% Similarity=0.283 Sum_probs=135.4
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC--CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~ 419 (909)
+.++.++..++.+|..+. .++++|++++|.|+.+|. .+.++++|++|++++|.+...++. +..++++++|.+..+.
T Consensus 11 ~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp SEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred CEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 577888888999998774 589999999999999986 478899999999999988776654 7789999999988765
Q ss_pred cccee-cccccCCCcccEeccccccCccccCccccCCcCcEEEc--cCCCCCcccCc-----cccCcceeeccccCcccc
Q 039311 420 CLLET-HSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLIL--SGCSNLMSFPE-----LSCNIEELSLDGTAIQEF 491 (909)
Q Consensus 420 ~l~~~-p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L--s~c~~l~~lp~-----~~~~L~~L~L~~~~i~~l 491 (909)
.+... +..+..+++|++|+++++. +...+....+.+++.+.. .++..+..++. ....++.|++++|.+..+
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i 168 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 168 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccccccccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 55444 4567899999999999964 656655444555554432 23334444432 234567788888888888
Q ss_pred CcccccCCCCCEEeccCCCCCCcCccc-ccCCCCCCeeec
Q 039311 492 PSSIERLSSLILLNLGNCLRLEGLPSK-ICKLKSLERLNL 530 (909)
Q Consensus 492 p~~i~~l~~L~~L~L~~c~~l~~lp~~-l~~L~~L~~L~l 530 (909)
+..+....++..+....+..++.+|.. +.++++|+.|++
T Consensus 169 ~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~L 208 (242)
T d1xwdc1 169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208 (242)
T ss_dssp CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEEC
T ss_pred ccccccchhhhccccccccccccccHHHhcCCCCCCEEEC
Confidence 877777777776665555566666653 567777777766
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=3e-13 Score=137.33 Aligned_cols=183 Identities=18% Similarity=0.256 Sum_probs=89.3
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
.+|++|.+.++.++++++.-.+++|++|++++|.+..++. +..+++|+++++++|.. +.++.+..+++|+++++++|.
T Consensus 41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~~ 118 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ 118 (227)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC
T ss_pred CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccc-ccccccccccccccccccccc
Confidence 3455566666666666433355666666666666665543 56666666666666542 344555566666666666554
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC-ccccCcceeeccccCccccCcccccC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP-ELSCNIEELSLDGTAIQEFPSSIERL 498 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp-~~~~~L~~L~L~~~~i~~lp~~i~~l 498 (909)
... ...+...+.++.+.++++. +.......++++|+.|++++|......+ ..+.+|++|++++|.++.+|. ++++
T Consensus 119 ~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l 194 (227)
T d1h6ua2 119 ITD--VTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASL 194 (227)
T ss_dssp CCC--CGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred ccc--cchhccccchhhhhchhhh-hchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh-hcCC
Confidence 322 1234445555555555533 2222233345555555555543221111 112334444444444444432 4445
Q ss_pred CCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 499 SSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 499 ~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
++|++|+|++|+ +..++. ++++++|+.|++
T Consensus 195 ~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~l 224 (227)
T d1h6ua2 195 PNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTL 224 (227)
T ss_dssp TTCCEEECTTSC-CCBCGG-GTTCTTCCEEEE
T ss_pred CCCCEEECcCCc-CCCCcc-cccCCCCCEEEe
Confidence 555555555542 333332 444444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.47 E-value=1.2e-13 Score=140.45 Aligned_cols=200 Identities=19% Similarity=0.246 Sum_probs=110.0
Q ss_pred eeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecc
Q 039311 347 WHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHS 426 (909)
Q Consensus 347 l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~ 426 (909)
+..+.+..+.....+.+|+.|++.+++|+.+ +++.++++|++|++++|.+. .++.+..+++|+++++++|.. ..++
T Consensus 26 l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~-~~~~l~~l~~l~~l~~~~n~~-~~i~- 101 (227)
T d1h6ua2 26 AGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPL-KNVS- 101 (227)
T ss_dssp TTCSSTTSEECHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCCC-SCCG-
T ss_pred hCCCCcCCcCCHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceee-ccccccccccccccccccccc-cccc-
Confidence 3344444443333556788888888888887 46788888888888887644 344477777888888777643 2333
Q ss_pred cccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEec
Q 039311 427 SIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNL 506 (909)
Q Consensus 427 ~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 506 (909)
.+..+++|+++++++|. ...++.....+.++.+.+++|.... .+ .+...++|+.|++
T Consensus 102 ~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~---------------------~~-~~~~~~~L~~L~l 158 (227)
T d1h6ua2 102 AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITN---------------------IS-PLAGLTNLQYLSI 158 (227)
T ss_dssp GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCC---------------------CG-GGGGCTTCCEEEC
T ss_pred ccccccccccccccccc-ccccchhccccchhhhhchhhhhch---------------------hh-hhccccccccccc
Confidence 46677777777777654 2333333345666666665543322 11 2334444555555
Q ss_pred cCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCE
Q 039311 507 GNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTY 586 (909)
Q Consensus 507 ~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~ 586 (909)
++|.... .+ .++++++|+.|++ +++.++.++. +..+++|++|++++|. +. .++.+.++++|+.
T Consensus 159 ~~n~~~~-~~-~l~~l~~L~~L~L---------s~n~l~~l~~-l~~l~~L~~L~Ls~N~---lt--~i~~l~~l~~L~~ 221 (227)
T d1h6ua2 159 GNAQVSD-LT-PLANLSKLTTLKA---------DDNKISDISP-LASLPNLIEVHLKNNQ---IS--DVSPLANTSNLFI 221 (227)
T ss_dssp CSSCCCC-CG-GGTTCTTCCEEEC---------CSSCCCCCGG-GGGCTTCCEEECTTSC---CC--BCGGGTTCTTCCE
T ss_pred ccccccc-ch-hhcccccceeccc---------CCCccCCChh-hcCCCCCCEEECcCCc---CC--CCcccccCCCCCE
Confidence 5443221 11 1444455544444 2233333332 4555566666665522 22 1233555666666
Q ss_pred EecC
Q 039311 587 LRLT 590 (909)
Q Consensus 587 L~Ls 590 (909)
|+|+
T Consensus 222 L~ls 225 (227)
T d1h6ua2 222 VTLT 225 (227)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6664
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=4.4e-13 Score=133.03 Aligned_cols=160 Identities=20% Similarity=0.294 Sum_probs=82.0
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCT 419 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 419 (909)
.++++|+++++.++++++.-.+++|++|++++|.++.++. ++++++|++|++++|.. ..++.++++++|++|++++|.
T Consensus 40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~~~ 117 (199)
T d2omxa2 40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLFNNQ 117 (199)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECCSSC
T ss_pred cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCccccccccccccc-ccccccccccccccccccccc
Confidence 3455555555555555433345556666666665555543 55566666666655542 233345555555555555543
Q ss_pred ccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
... ...+..+++|+.|++++|. +..++....+++|+. |++.+|.++.++ .+++++
T Consensus 118 ~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~---------------------L~l~~n~l~~l~-~l~~l~ 172 (199)
T d2omxa2 118 ITD--IDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ---------------------LNFSSNQVTDLK-PLANLT 172 (199)
T ss_dssp CCC--CGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSE---------------------EECCSSCCCCCG-GGTTCT
T ss_pred ccc--ccccchhhhhHHhhhhhhh-hcccccccccccccc---------------------cccccccccCCc-cccCCC
Confidence 322 1224445555555555432 333333223444444 444445555554 366777
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCee
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERL 528 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L 528 (909)
+|+.|++++|+ +..++ .++++++|+.|
T Consensus 173 ~L~~L~ls~N~-i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 173 TLERLDISSNK-VSDIS-VLAKLTNLESL 199 (199)
T ss_dssp TCCEEECCSSC-CCCCG-GGGGCTTCSEE
T ss_pred CCCEEECCCCC-CCCCc-cccCCCCCCcC
Confidence 77777777774 44444 35666666654
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.43 E-value=3.8e-13 Score=134.68 Aligned_cols=162 Identities=20% Similarity=0.243 Sum_probs=93.2
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
.|++|+++++.++.+++.-.+.+|++|++++|.++.++. +..+++|++|++++|++ +.+|.+..+++|+.|++++|..
T Consensus 47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l~~~~~ 124 (210)
T d1h6ta2 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNGI 124 (210)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSCC
T ss_pred CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc-cccCccccccccccccc-cccccccccccccccccccccc
Confidence 455666666666665543355666666666666666553 45666666666666653 3445566666666666666543
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
. . ...+..+++|+.+++++|. +...+....+++|+.+++++ |.+..++. +.++++
T Consensus 125 ~-~-~~~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~---------------------n~l~~i~~-l~~l~~ 179 (210)
T d1h6ta2 125 S-D-INGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLED---------------------NQISDIVP-LAGLTK 179 (210)
T ss_dssp C-C-CGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCS---------------------SCCCCCGG-GTTCTT
T ss_pred c-c-ccccccccccccccccccc-cccccccccccccccccccc---------------------cccccccc-ccCCCC
Confidence 2 1 2245555666666665532 33333333455555555544 44444442 666777
Q ss_pred CCEEeccCCCCCCcCcccccCCCCCCeeecc
Q 039311 501 LILLNLGNCLRLEGLPSKICKLKSLERLNLA 531 (909)
Q Consensus 501 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~ 531 (909)
|+.|++++|. +..+| .+..+++|+.|+++
T Consensus 180 L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 180 LQNLYLSKNH-ISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp CCEEECCSSC-CCBCG-GGTTCTTCSEEEEE
T ss_pred CCEEECCCCC-CCCCh-hhcCCCCCCEEEcc
Confidence 7777777774 44555 47777777777763
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.42 E-value=5.5e-13 Score=133.51 Aligned_cols=124 Identities=24% Similarity=0.277 Sum_probs=78.7
Q ss_pred cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccc
Q 039311 495 IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLL 574 (909)
Q Consensus 495 i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 574 (909)
++.+++|+.|++++|. +..+| .+..+++|+.|++. ++.+..++ .+..+++|+.++++++.. . .
T Consensus 86 ~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~---------~~~~~~~~-~l~~l~~l~~l~~~~n~l---~--~ 148 (210)
T d1h6ta2 86 LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLE---------HNGISDIN-GLVHLPQLESLYLGNNKI---T--D 148 (210)
T ss_dssp GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECT---------TSCCCCCG-GGGGCTTCCEEECCSSCC---C--C
T ss_pred cccCcccccccccccc-ccccc-cccccccccccccc---------cccccccc-cccccccccccccccccc---c--c
Confidence 4455555555555553 23333 24555555555542 22222222 355566666666665222 1 1
Q ss_pred cCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecC
Q 039311 575 LPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 575 ~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~ 637 (909)
.+....+++|+.+++++|.+.+++. +.++++|+.|+|++|+++.+| .+..+++|+.|+|++
T Consensus 149 ~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 149 ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred ccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence 2334557888888888888887754 788899999999999888887 588888999998864
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.3e-14 Score=147.05 Aligned_cols=85 Identities=25% Similarity=0.341 Sum_probs=39.6
Q ss_pred cCCCCCEEecCCCcCCCcC-CC-CCccccccccccccccccceecccccCCCcccEeccccccCcccc--Cccc-cCCcC
Q 039311 383 RLVNLKHINLSHSEHLTKI-PD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSL--STSI-HLGSL 457 (909)
Q Consensus 383 ~L~~L~~L~Ls~~~~l~~~-p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~l--p~~~-~l~~L 457 (909)
...+|++||+++|.+.... +. +..+++|++|++++|......+..++.+++|++|++++|..++.- .... ++++|
T Consensus 44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence 3445555555554432221 11 344555555555555444444445555555555555555544321 1111 24555
Q ss_pred cEEEccCCCC
Q 039311 458 KKLILSGCSN 467 (909)
Q Consensus 458 ~~L~Ls~c~~ 467 (909)
++|++++|..
T Consensus 124 ~~L~ls~c~~ 133 (284)
T d2astb2 124 DELNLSWCFD 133 (284)
T ss_dssp CEEECCCCTT
T ss_pred cccccccccc
Confidence 5555555443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.6e-12 Score=133.13 Aligned_cols=99 Identities=14% Similarity=0.151 Sum_probs=63.9
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecc-cccCCCcccEeccccc
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHS-SIQYLNKLVVLNLKHC 442 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~-~i~~L~~L~~L~L~~c 442 (909)
+.++.++.+++.+|.++. .++++|++++|.+....+. |.++++|++|++++|.....++. .+..+++++++.+..+
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~ 88 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence 466777777888887653 5788888888875443333 67788888888887766555543 4566777777776665
Q ss_pred cCccccCccc--cCCcCcEEEccCC
Q 039311 443 RSLTSLSTSI--HLGSLKKLILSGC 465 (909)
Q Consensus 443 ~~l~~lp~~~--~l~~L~~L~Ls~c 465 (909)
..+..++... ++++|+.|++++|
T Consensus 89 n~l~~~~~~~~~~l~~L~~l~l~~~ 113 (242)
T d1xwdc1 89 NNLLYINPEAFQNLPNLQYLLISNT 113 (242)
T ss_dssp TTCCEECTTSEECCTTCCEEEEESC
T ss_pred ccccccccccccccccccccccchh
Confidence 5555554432 3555555555553
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.40 E-value=1.5e-12 Score=129.14 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=29.7
Q ss_pred cCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEE
Q 039311 578 SFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSL 633 (909)
Q Consensus 578 ~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L 633 (909)
+..+++|+.|++.+|.+.+++ .++++++|+.|++++|+++.++ .+..+++|++|
T Consensus 146 l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 146 LSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp GTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred ccccccccccccccccccCCc-cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence 444555556666555555543 2555566666666666555554 34555555544
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=2e-13 Score=143.58 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=75.7
Q ss_pred eEEEcCCCCccccccccccC--CCCCEEecCCCcCCCcCCCCCccccccccccccccccce-ecccccCCCcccEecccc
Q 039311 365 VSLEMPHSSIKQLWKGVQRL--VNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLE-THSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~-~p~~i~~L~~L~~L~L~~ 441 (909)
+.||++++.+. |..+.++ ..+..+.++.+.............+|++|++++|..... +...+..+++|++|++++
T Consensus 3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 35677766553 1111111 234566666554333333345667899999998865543 344567888899999988
Q ss_pred ccCccccCccc-cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCC
Q 039311 442 CRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLE 513 (909)
Q Consensus 442 c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~ 513 (909)
|..-...+..+ .+++|++|++++|..++.. .+..-+.++++|++|++++|....
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~------------------~l~~l~~~~~~L~~L~ls~c~~~~ 135 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF------------------ALQTLLSSCSRLDELNLSWCFDFT 135 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHH------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred cCCCcHHHHHHhcCCCCcCcccccccccccc------------------ccchhhHHHHhccccccccccccc
Confidence 75322222222 4778888888887654321 122223467788888888875543
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=5.3e-11 Score=107.59 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=80.0
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLL 422 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~ 422 (909)
|+|++++|.++.+|..-.+.+|++|++++|.|+.+|.++..+++|++|++++|.+ +.+|++..+++|++|++++|....
T Consensus 1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~~~~~l~~L~~L~l~~N~i~~ 79 (124)
T d1dcea3 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDGVANLPRLQELLLCNNRLQQ 79 (124)
T ss_dssp SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSCCCS
T ss_pred CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccCccccccccCeEECCCCccCC
Confidence 6788899999888865578899999999999999988888899999999998874 456778888889999998876432
Q ss_pred ee-cccccCCCcccEecccccc
Q 039311 423 ET-HSSIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 423 ~~-p~~i~~L~~L~~L~L~~c~ 443 (909)
.. ...++.+++|++|++++|.
T Consensus 80 ~~~~~~l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 80 SAAIQPLVSCPRLVLLNLQGNS 101 (124)
T ss_dssp SSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCchhhcCCCCCCEEECCCCc
Confidence 21 2457788888888888854
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=7.1e-11 Score=115.99 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=101.1
Q ss_pred cEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccc-cc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccc
Q 039311 343 RYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQ-LW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCT 419 (909)
Q Consensus 343 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~-lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~ 419 (909)
+.++.+++.++++|..++ .++++|+|++|.|.. ++ ..+..+++|+.|+|++|.+....+. +..+++|++|++++|.
T Consensus 11 ~~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~ 89 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEEeCCCcCccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence 467888889999998875 689999999999975 43 4568899999999999988777765 8889999999999987
Q ss_pred ccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCC
Q 039311 420 CLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNL 468 (909)
Q Consensus 420 ~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l 468 (909)
...-.+..+..+++|++|+|++| .++.+|... ++++|++|+|+++...
T Consensus 90 l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 90 IKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccccCHHHHhCCCcccccccCCc-cccccCHHHhcCCcccccccccccccc
Confidence 55444567889999999999996 477776654 5889999999887543
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.2e-11 Score=114.69 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceeccc-ccCCCcccEec
Q 039311 360 PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSS-IQYLNKLVVLN 438 (909)
Q Consensus 360 ~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~-i~~L~~L~~L~ 438 (909)
++.+|++|+|++|+|+.++.....+++|++|+|++|.+ ..++.++.+++|++|++++|.. ..++.. +..+++|++|+
T Consensus 16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i-~~l~~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTELI 93 (162)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEECCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCEEE
T ss_pred CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCC-CccCCcccCcchhhhhcccccc-cCCCccccccccccccce
Confidence 44455556666666655554444556666666666543 3345555566666666666543 333332 34566666666
Q ss_pred cccc
Q 039311 439 LKHC 442 (909)
Q Consensus 439 L~~c 442 (909)
+++|
T Consensus 94 L~~N 97 (162)
T d1a9na_ 94 LTNN 97 (162)
T ss_dssp CCSC
T ss_pred eccc
Confidence 6664
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=8.1e-11 Score=111.86 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=81.3
Q ss_pred CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQ 416 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 416 (909)
+.++|.|++++|.++.+|..+ .+.+|++|++++|.|..++ ++..+++|++|++++|.+....+. +..+++|++|+++
T Consensus 17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~ 95 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 95 (162)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence 446777777777777777654 5677888888888877773 577777888888888775554444 4567788888888
Q ss_pred cccccceec--ccccCCCcccEeccccccCccccCcc----c-cCCcCcEEEc
Q 039311 417 GCTCLLETH--SSIQYLNKLVVLNLKHCRSLTSLSTS----I-HLGSLKKLIL 462 (909)
Q Consensus 417 ~c~~l~~~p--~~i~~L~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~L 462 (909)
+|... .++ ..+..+++|++|++++|. +...|.. + .+++|++|+-
T Consensus 96 ~N~i~-~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 96 NNSLV-ELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp SCCCC-CGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccccc-ccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence 76542 222 356677788888888764 4555431 2 4677777653
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.9e-11 Score=137.02 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=34.6
Q ss_pred CCCCCEEecCCCCCCC-----cccccC-CCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLG-QLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~-~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c 638 (909)
.++|++|+|++|.+.+ ++..+. ..+.|+.|+|++|+++ .++..+..+++|++|+|++|
T Consensus 339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N 407 (460)
T d1z7xw1 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 407 (460)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence 4567777777766542 333443 3456777777777665 23445556667777777765
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=6e-10 Score=100.47 Aligned_cols=116 Identities=22% Similarity=0.201 Sum_probs=68.6
Q ss_pred ceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCC
Q 039311 479 EELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLG 558 (909)
Q Consensus 479 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~ 558 (909)
+.|++++|.++.++. ++++++|++|++++|.. ..+|..++.+++|+.|++. +|.++.+
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~---------~N~i~~l----------- 58 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQAS---------DNALENV----------- 58 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECC---------SSCCCCC-----------
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-Ccchhhhhhhhcccccccc---------ccccccc-----------
Confidence 356777777777763 77777888888777643 4455555555555555442 2222222
Q ss_pred eeecCccccccccccccCccCCCCCCCEEecCCCCCCCcc--cccCCCCCCcEEECCCCCCeecc---h-hhccCCCCCE
Q 039311 559 RLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP--ECLGQLSSRSILLLEKNNFERIP---E-SIIQLSHLFS 632 (909)
Q Consensus 559 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp---~-~i~~l~~L~~ 632 (909)
+.+..+++|+.|++++|.+.+++ ..+..+++|+.|++++|.++..+ . .+..+|+|+.
T Consensus 59 -----------------~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~ 121 (124)
T d1dcea3 59 -----------------DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121 (124)
T ss_dssp -----------------GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred -----------------CccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcce
Confidence 23445666777777777776554 34666777777777777766433 2 2344566655
Q ss_pred E
Q 039311 633 L 633 (909)
Q Consensus 633 L 633 (909)
|
T Consensus 122 L 122 (124)
T d1dcea3 122 I 122 (124)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.01 E-value=2e-10 Score=112.74 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=82.9
Q ss_pred CCCccEEEeeCCCCCc-cCCC-C-CCCCeeEEEcCCCCccccc-cccccCCCCCEEecCCCcCCCcCCC-CCcccccccc
Q 039311 339 STELRYLQWHGCPLKS-LSSK-I-PPENLVSLEMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESL 413 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~-lp~~-~-~~~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L 413 (909)
+..+++|++++|.+.. ++.. | .+.+|+.|+|++|.+..++ ..+..+++|++|+|++|++....|+ |.++++|++|
T Consensus 28 p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L 107 (192)
T d1w8aa_ 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccc
Confidence 4678889999998865 4333 3 6789999999999888776 4567788999999999987666565 8889999999
Q ss_pred ccccccccceecccccCCCcccEecccccc
Q 039311 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCR 443 (909)
Q Consensus 414 ~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~ 443 (909)
+|++|....-.+..+..+++|++|+|++|.
T Consensus 108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccCCccccccCHHHhcCCcccccccccccc
Confidence 999987555445667889999999998865
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.7e-11 Score=137.41 Aligned_cols=329 Identities=16% Similarity=0.084 Sum_probs=178.7
Q ss_pred cccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCc-----cCCCC--CCCCeeEEEcCCCCccc--
Q 039311 307 SFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKS-----LSSKI--PPENLVSLEMPHSSIKQ-- 376 (909)
Q Consensus 307 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~-----lp~~~--~~~~L~~L~L~~~~i~~-- 376 (909)
.+..++++|+|++.+|.+.+... ..+...+. .++|++|++++|.+.. +...+ ...+|++|++++|.++.
T Consensus 22 l~~~l~~l~~L~L~~~~i~~~~~-~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~ 100 (460)
T d1z7xw1 22 LLPLLQQCQVVRLDDCGLTEARC-KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100 (460)
T ss_dssp HHHHHTTCSEEEEESSCCCHHHH-HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred HHHhCCCCCEEEeCCCCCCHHHH-HHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccc
Confidence 35677888888888876532110 01111122 5678888888887742 33333 23478889998888764
Q ss_pred ---cccccccCCCCCEEecCCCcCCCcCCC----------------------------------CCcccccccccccccc
Q 039311 377 ---LWKGVQRLVNLKHINLSHSEHLTKIPD----------------------------------LSLATNLESLNFQGCT 419 (909)
Q Consensus 377 ---lp~~~~~L~~L~~L~Ls~~~~l~~~p~----------------------------------l~~l~~L~~L~L~~c~ 419 (909)
++..+..+++|++|++++|.+...... +.....++.++++++.
T Consensus 101 ~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~ 180 (460)
T d1z7xw1 101 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180 (460)
T ss_dssp HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred cccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccc
Confidence 445677888889999888764221000 0011222333333222
Q ss_pred cccee----cccc-cCCCcccEeccccccCccc----cCcc-ccCCcCcEEEccCCCCCc--------ccCccccCccee
Q 039311 420 CLLET----HSSI-QYLNKLVVLNLKHCRSLTS----LSTS-IHLGSLKKLILSGCSNLM--------SFPELSCNIEEL 481 (909)
Q Consensus 420 ~l~~~----p~~i-~~L~~L~~L~L~~c~~l~~----lp~~-~~l~~L~~L~Ls~c~~l~--------~lp~~~~~L~~L 481 (909)
..... ...+ ..-.....+++.+|..... .... .....++.+.++++.... ........++.+
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l 260 (460)
T d1z7xw1 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 260 (460)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccc
Confidence 11000 0000 0112233344444321110 0000 135667777777654321 122234467788
Q ss_pred eccccCccc-----cCcccccCCCCCEEeccCCCCCCc----Ccccc-cCCCCCCeeecccccccccccCcceeecCccc
Q 039311 482 SLDGTAIQE-----FPSSIERLSSLILLNLGNCLRLEG----LPSKI-CKLKSLERLNLAEALKELKAEGIAIREVPSSI 551 (909)
Q Consensus 482 ~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~l~~----lp~~l-~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i 551 (909)
++++|.+.. +...+...+.++.+++++|..... +...+ .....|+.+++..+ .+.......+...+
T Consensus 261 ~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~----~l~~~~~~~l~~~~ 336 (460)
T d1z7xw1 261 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC----SFTAACCSHFSSVL 336 (460)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS----CCBGGGHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc----chhhhhhhhccccc
Confidence 888877662 233455677888888887754321 11111 23345666666432 11222222333445
Q ss_pred cccCCCCeeecCcccccccccccc-CccC-CCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCee-----
Q 039311 552 ACLKNLGRLSFESFMCHEQMGLLL-PISF-GLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFER----- 619 (909)
Q Consensus 552 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~~-~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~----- 619 (909)
...++|+.|++++|.........+ ..+. ..+.|+.|+|++|.+++ ++..+..+++|++|+|++|+++.
T Consensus 337 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~ 416 (460)
T d1z7xw1 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416 (460)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHH
Confidence 667789999999843221100111 1122 35789999999999984 55667788999999999999872
Q ss_pred cchhhc-cCCCCCEEeecCCCC
Q 039311 620 IPESII-QLSHLFSLGISHCER 640 (909)
Q Consensus 620 lp~~i~-~l~~L~~L~L~~c~~ 640 (909)
+...+. +...|+.|++.++..
T Consensus 417 l~~~l~~~~~~L~~l~l~~~~~ 438 (460)
T d1z7xw1 417 LVESVRQPGCLLEQLVLYDIYW 438 (460)
T ss_dssp HHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHhCCCccCEEECCCCCC
Confidence 223343 334789999988754
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.84 E-value=4.1e-11 Score=118.11 Aligned_cols=114 Identities=24% Similarity=0.211 Sum_probs=64.8
Q ss_pred CccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccc
Q 039311 373 SIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI 452 (909)
Q Consensus 373 ~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~ 452 (909)
.++.++.++..+++|++|+|++|.+ +.++.+..+++|++|++++|. +..+|.....+++|+.|++++| .++.++...
T Consensus 36 ~i~~l~~sl~~L~~L~~L~Ls~n~I-~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~~~ 112 (198)
T d1m9la_ 36 PIEKMDATLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLSGIE 112 (198)
T ss_dssp TCCCCHHHHHHTTTCCEEECSEEEE-SCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE-ECCCHHHHH
T ss_pred chhhhhhHHhcccccceeECcccCC-CCcccccCCccccChhhcccc-cccccccccccccccccccccc-ccccccccc
Confidence 3555566666677777777776653 345556666666777766654 3344444444556666666664 344444333
Q ss_pred cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccC--cccccCCCCCEEeccCCC
Q 039311 453 HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFP--SSIERLSSLILLNLGNCL 510 (909)
Q Consensus 453 ~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~ 510 (909)
.+++|+.|++++ |.+..++ ..+..+++|+.|++++|+
T Consensus 113 ~l~~L~~L~L~~---------------------N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 113 KLVNLRVLYMSN---------------------NKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESE---------------------EECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccccccccccc---------------------chhccccccccccCCCccceeecCCCc
Confidence 455555555544 4444443 235566666666666664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.81 E-value=6.3e-11 Score=116.73 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecch--hhccCCCCCEEeecCCCCCcccCCCCC--CcCceecc
Q 039311 582 TSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPE--SIIQLSHLFSLGISHCERLHSLPELPC--DLSDIEAH 657 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~~L~~lp~l~~--sL~~L~i~ 657 (909)
++|+.|++++|.+..++ .+..+++|+.|++++|+++.++. .+..+++|+.|+|++|+--...+.... ..+..-+.
T Consensus 93 ~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~ 171 (198)
T d1m9la_ 93 DTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HHCCEEECSEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence 34555555556555543 34556666666666666665542 456666677777666542222222111 11222245
Q ss_pred cCcccccccC
Q 039311 658 CCSSLEALSG 667 (909)
Q Consensus 658 ~C~~L~~l~~ 667 (909)
.||+|+.+..
T Consensus 172 ~lp~L~~LD~ 181 (198)
T d1m9la_ 172 RLPNLKKLDG 181 (198)
T ss_dssp HCSSCCEESS
T ss_pred HCCCcCEeCC
Confidence 5666666554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.76 E-value=7.5e-10 Score=119.26 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=52.9
Q ss_pred ccccCCCCeeecCcccccccccccc-CccCCCCCCCEEecCCCCCCC-----cccccC--CCCCCcEEECCCCCCe----
Q 039311 551 IACLKNLGRLSFESFMCHEQMGLLL-PISFGLTSLTYLRLTDCGIIE-----LPECLG--QLSSRSILLLEKNNFE---- 618 (909)
Q Consensus 551 i~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~--~l~~L~~L~L~~n~l~---- 618 (909)
+..+++|+.|++++|.........+ ..+...++|++|+|++|.+.+ +...+. ..+.|+.|++++|++.
T Consensus 211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~ 290 (344)
T d2ca6a1 211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 290 (344)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence 4455566666665532211100011 224456788888888888773 333332 2467888888888876
Q ss_pred -ecchhhc-cCCCCCEEeecCCC
Q 039311 619 -RIPESII-QLSHLFSLGISHCE 639 (909)
Q Consensus 619 -~lp~~i~-~l~~L~~L~L~~c~ 639 (909)
.+...+. +++.|+.|+|++|.
T Consensus 291 ~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 291 RTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHccCCCCCEEECCCCc
Confidence 2444553 67888999988865
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.64 E-value=2.5e-09 Score=115.09 Aligned_cols=112 Identities=17% Similarity=0.049 Sum_probs=73.9
Q ss_pred cCccccccCCCCeeecCccccccc--cccccCccCCCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCee
Q 039311 547 VPSSIACLKNLGRLSFESFMCHEQ--MGLLLPISFGLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFER 619 (909)
Q Consensus 547 lp~~i~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~ 619 (909)
+...+..++.|+.|+++++..... .......+..+++|+.|+|++|.+.. +...+..+++|++|+|++|.+..
T Consensus 178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~ 257 (344)
T d2ca6a1 178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 257 (344)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence 344456667788888876322110 01112335568999999999998863 55677889999999999999873
Q ss_pred -----cchhhcc--CCCCCEEeecCCCCCcc-----cCC----CCCCcCceecccC
Q 039311 620 -----IPESIIQ--LSHLFSLGISHCERLHS-----LPE----LPCDLSDIEAHCC 659 (909)
Q Consensus 620 -----lp~~i~~--l~~L~~L~L~~c~~L~~-----lp~----l~~sL~~L~i~~C 659 (909)
+-..+.. .+.|+.|+|++|. +.. +.. -.++|+.|++.++
T Consensus 258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N 312 (344)
T d2ca6a1 258 RGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 312 (344)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred hhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence 2233333 4679999999985 432 211 2346778887664
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=5.8e-08 Score=90.98 Aligned_cols=98 Identities=21% Similarity=0.135 Sum_probs=70.4
Q ss_pred cCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCe
Q 039311 540 EGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 540 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~ 618 (909)
.++...+.|..+..+++|+.|++.+ .+.+.......+.++++|+.|+|++|++..+ +..+..+++|+.|+|++|+++
T Consensus 16 ~~~~~~~~p~~l~~l~~l~~L~l~~--n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~ 93 (156)
T d2ifga3 16 TRDGALDSLHHLPGAENLTELYIEN--QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (156)
T ss_dssp CSSCCCTTTTTSCSCSCCSEEECCS--CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred cCCCCccCcccccCccccCeeecCC--CccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence 4444555566666667777777765 2233333444567788888888888888876 456788888888899888888
Q ss_pred ecchhhccCCCCCEEeecCCC
Q 039311 619 RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 619 ~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.+|..+....+|+.|+|++++
T Consensus 94 ~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 94 SLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp CCCSTTTCSCCCCEEECCSSC
T ss_pred ccChhhhccccccccccCCCc
Confidence 888776666678888888875
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.1e-07 Score=86.99 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=57.2
Q ss_pred eEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCC--CCCccccccccccccccccceecccccCCCcccEeccccc
Q 039311 365 VSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIP--DLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 365 ~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c 442 (909)
+.++.+++++...|..+..+++|+.|+++++..++.++ .|.++++|+.|++++|....--+..+..+++|++|+|++|
T Consensus 11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (156)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence 34555555555556556666666666665554444444 2566666666666665433333445666677777777764
Q ss_pred cCccccCccc-cCCcCcEEEccCCC
Q 039311 443 RSLTSLSTSI-HLGSLKKLILSGCS 466 (909)
Q Consensus 443 ~~l~~lp~~~-~l~~L~~L~Ls~c~ 466 (909)
. ++.+|... ...+|+.|+|++|.
T Consensus 91 ~-l~~l~~~~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 91 A-LESLSWKTVQGLSLQELVLSGNP 114 (156)
T ss_dssp C-CSCCCSTTTCSCCCCEEECCSSC
T ss_pred C-CcccChhhhccccccccccCCCc
Confidence 3 55555543 34456666666643
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00021 Score=66.34 Aligned_cols=118 Identities=20% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCcc---c-cCCcCcEEE
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTS---I-HLGSLKKLI 461 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~---~-~l~~L~~L~ 461 (909)
..+.|++++.. ..+++..+..+..++...+ ....++.....+++|++|+|++|. ++.++.. + .+++|+.|+
T Consensus 23 ~~~~Ldls~l~---~~~~l~~~~~~~~l~~~~~-~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~ 97 (162)
T d1koha1 23 SQQALDLKGLR---SDPDLVAQNIDVVLNRRSS-MAATLRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILN 97 (162)
T ss_dssp SSCCBCCCCCS---SCTTTTTTTCCCCTTSHHH-HHHHHHHHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCC
T ss_pred hhCeeecccCC---CCchhhhccchhhcchhhh-HhhhhHHHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccc
Confidence 45566776543 2344444444555554432 222223333456777777777753 4444321 1 244444444
Q ss_pred ccCCCCCcccCccccCcceeeccccCccccCcc-cccCCCCCEEeccCCCCCCcCcc-------cccCCCCCCeee
Q 039311 462 LSGCSNLMSFPELSCNIEELSLDGTAIQEFPSS-IERLSSLILLNLGNCLRLEGLPS-------KICKLKSLERLN 529 (909)
Q Consensus 462 Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~-------~l~~L~~L~~L~ 529 (909)
+ ++|.|+.++.. .....+|+.|++++|........ .+..+|+|+.|+
T Consensus 98 L---------------------s~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 98 L---------------------SGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp C---------------------TTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred c---------------------ccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 4 44555555431 22334567777777655443221 134556666554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.00035 Score=64.78 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=35.9
Q ss_pred CCCCCEEecCCCCCCCc---ccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCCC
Q 039311 581 LTSLTYLRLTDCGIIEL---PECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCER 640 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~l---p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~ 640 (909)
+++|+.|+|++|.++.+ +..+..+++|+.|+|++|.++.++. .......|+.|++++|+-
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl 127 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence 45666666666666643 2334556777777777777776654 222334567777777653
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.51 E-value=0.0024 Score=59.12 Aligned_cols=35 Identities=14% Similarity=-0.003 Sum_probs=16.3
Q ss_pred CCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCC
Q 039311 582 TSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNN 616 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~ 616 (909)
+.|+.|+|++|.+.+ +...+..-++|++|+|++|.
T Consensus 72 ~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred ccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence 445555555554442 23334444455555555443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.85 E-value=0.0073 Score=55.71 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=53.1
Q ss_pred cCCCCeeecCccccccccccc----cCccCCCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCee-----
Q 039311 554 LKNLGRLSFESFMCHEQMGLL----LPISFGLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFER----- 619 (909)
Q Consensus 554 l~~L~~L~l~~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~----- 619 (909)
.++|+.|+|++ ++.+.... ...+...++|+.|+|++|.+.+ +...+...+.|+.|+|++|.+..
T Consensus 14 ~~~L~~L~L~~--~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 14 DTDLKEVNINN--MKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp CSSCCEEECTT--CCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCCcEEEeCC--CCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 35566666655 32222211 1224456778888888888762 44555667888889998888772
Q ss_pred cchhhccCCCCCEEeecCC
Q 039311 620 IPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 620 lp~~i~~l~~L~~L~L~~c 638 (909)
+-..+...+.|++|+|+++
T Consensus 92 l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhCCcCCEEECCCC
Confidence 3345566778888888876
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.41 E-value=0.038 Score=50.51 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=51.1
Q ss_pred ccCCCCeeecCcccccccccccc----CccCCCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe-----
Q 039311 553 CLKNLGRLSFESFMCHEQMGLLL----PISFGLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE----- 618 (909)
Q Consensus 553 ~l~~L~~L~l~~~~~~~~~~~~~----~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~----- 618 (909)
..++|+.|++++ ++.+....+ ..+...++|++|+|++|.+.. +...+...++++.+++++|.+.
T Consensus 15 ~~~~L~~L~L~~--~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~ 92 (166)
T d1io0a_ 15 NDPDLEEVNLNN--IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 92 (166)
T ss_dssp TCTTCCEEECTT--CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred cCCCCcEEEcCC--CCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence 345666666654 333322222 123356778888888887762 4445566778888888887765
Q ss_pred ecchhhccCCCCCEEeecCC
Q 039311 619 RIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 619 ~lp~~i~~l~~L~~L~L~~c 638 (909)
.+-..+...++|+.++|+.|
T Consensus 93 ~l~~~l~~~~~L~~l~L~l~ 112 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRIDNQ 112 (166)
T ss_dssp HHHHGGGGCSSCCEEECCCC
T ss_pred HHHHHHHhCccccEEeeccC
Confidence 23455667777887777654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.91 E-value=0.1 Score=51.41 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=64.6
Q ss_pred hCCCeEEEEEeCCCCHHH------HHHHhhccCCCCCCCEEEEEeCCchhhhhc------------CCCcEEECCCCCHH
Q 039311 47 LSRKKVLIVFDDVSTSEQ------MEFLIGNQGWLMQGSRLIITARDKQVLKNC------------GVDTIYEVKELFDD 108 (909)
Q Consensus 47 L~~kr~LlVLDDv~~~~~------~~~l~~~~~~~~~gSrIivTTR~~~v~~~~------------~~~~~y~l~~L~~~ 108 (909)
...+++++|+|++..... +..+..... ....-..+++++........ .....+.+.+++.+
T Consensus 133 ~~~~~~~i~id~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~ 211 (283)
T d2fnaa2 133 ASKDNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSRE 211 (283)
T ss_dssp TCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHH
T ss_pred hcccccccccchhhhhcccchHHHHHHHHHHHH-hhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHH
Confidence 457899999999854221 222222111 12344566666665443322 12357889999999
Q ss_pred HHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhc
Q 039311 109 DARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLC 154 (909)
Q Consensus 109 es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~ 154 (909)
|+.+++.+.+-......+. ..+|.++++|.|..+..+|..+.
T Consensus 212 e~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~ 253 (283)
T d2fnaa2 212 EAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYL 253 (283)
T ss_dssp HHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999987654222222122 46899999999999999887664
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=91.32 E-value=0.02 Score=52.44 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=39.5
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEECC--CCCCe-----ecchhhccCCCCCEEeecCC
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLE--KNNFE-----RIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~--~n~l~-----~lp~~i~~l~~L~~L~L~~c 638 (909)
.++|+.|++++|.+.. +...+...++|+.++|+ +|.+. .+...+...+.|+.|++..+
T Consensus 73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 5678888888887762 45666777888876665 45554 34455667778888877643
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=1.7 Score=40.44 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=67.0
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+||++. .+....+...+.....+.++|.||++.+ +.... ..-..+.+.+++.++..+.+.... ..
T Consensus 107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~~~~----~~ 182 (207)
T d1a5ta2 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (207)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHHHcC----CC
Confidence 4677999999985 4457777777777778899888888754 44433 233689999999999999886653 11
Q ss_pred CchhHHHHHHHHHHhCCCchHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
+ .+....+++.++|.|-.+.
T Consensus 183 ~---~~~~~~i~~~s~Gs~r~al 202 (207)
T d1a5ta2 183 S---QDALLAALRLSAGSPGAAL 202 (207)
T ss_dssp C---HHHHHHHHHHTTTCHHHHH
T ss_pred C---HHHHHHHHHHcCCCHHHHH
Confidence 1 3567888899999885543
|