Citrus Sinensis ID: 039325


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
MAHLEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSMVASF
ccHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHcccccccHHHcccccccEEccccccccccccccccccHHHHHHHHHHHHHHHccccc
cccHEHHHEcccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccHHHccccccccHHcccccccEcccccccccccHHHHHHHHHHHHHHHHHcc
MAHLEACAIDIWPELFIYCFESlvykhkypqgetcfeklgldltpiidcytsgygnlfldkpvfpaiynkeittlPTRIKSAITMWIHKMSMVASF
MAHLEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSMVASF
MAHLEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSMVASF
***LEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKM******
MAHLEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSMVASF
MAHLEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSMVASF
MAHLEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSM****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAHLEACAIDIWPELFIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAIYNKEITTLPTRIKSAITMWIHKMSMVASF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query96
225434490 284 PREDICTED: gamma-interferon-inducible ly 0.541 0.183 0.701 1e-15
225434492 259 PREDICTED: gamma-interferon-inducible ly 0.541 0.200 0.701 1e-15
147805691 259 hypothetical protein VITISV_012674 [Viti 0.541 0.200 0.701 2e-15
224103875 255 predicted protein [Populus trichocarpa] 0.552 0.207 0.568 1e-11
449454993 223 PREDICTED: gamma-interferon-inducible ly 0.541 0.233 0.614 7e-11
18390723 265 GILT domain-containing protein [Arabidop 0.552 0.2 0.551 7e-11
8954038 262 Contains similarity to an unknown protei 0.552 0.202 0.551 8e-11
224059859 220 predicted protein [Populus trichocarpa] 0.583 0.254 0.524 1e-10
297843502 268 hypothetical protein ARALYDRAFT_470730 [ 0.552 0.197 0.534 2e-10
226528114 247 LOC100284511 precursor [Zea mays] gi|195 0.552 0.214 0.551 2e-10
>gi|225434490|ref|XP_002275261.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 45/57 (78%), Gaps = 5/57 (8%)

Query: 4   LEACAIDIWPEL-----FIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYG 55
           +EACAID+WP+L     FIYC E+LVY+ KYPQ ETCFEKLGLD  PI DCY SGYG
Sbjct: 122 VEACAIDVWPDLSQHFSFIYCIETLVYERKYPQWETCFEKLGLDPKPISDCYNSGYG 178




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434492|ref|XP_002275283.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera] gi|297745847|emb|CBI15903.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147805691|emb|CAN76152.1| hypothetical protein VITISV_012674 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103875|ref|XP_002313228.1| predicted protein [Populus trichocarpa] gi|222849636|gb|EEE87183.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454993|ref|XP_004145238.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449472266|ref|XP_004153541.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449514550|ref|XP_004164407.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18390723|ref|NP_563779.1| GILT domain-containing protein [Arabidopsis thaliana] gi|15146334|gb|AAK83650.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|15809756|gb|AAL06806.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|332189954|gb|AEE28075.1| GILT domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8954038|gb|AAF82212.1|AC067971_20 Contains similarity to an unknown protein F7A7_100 gi|7327817 from Arabidopsis thaliana BAC F7A7 gb|AL161946. ESTs gb|N65842, gb|F19836 and gb|AI993679 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224059859|ref|XP_002300002.1| predicted protein [Populus trichocarpa] gi|222847260|gb|EEE84807.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297843502|ref|XP_002889632.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata] gi|297335474|gb|EFH65891.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|226528114|ref|NP_001150878.1| LOC100284511 precursor [Zea mays] gi|195642580|gb|ACG40758.1| gamma-interferon-inducible lysosomal thiol reductase precursor [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query96
TAIR|locus:2007407265 AT1G07080 "AT1G07080" [Arabido 0.552 0.2 0.551 1.6e-13
TAIR|locus:2149730233 OSH1 "AT5G01580" [Arabidopsis 0.541 0.223 0.396 1.1e-06
TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query:     4 LEACAIDIWPEL-----FIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGN 56
             +EACAID WP++     FIYC E LV +HKY + ETC+EKL L+  P+ DC +SG+GN
Sbjct:   105 VEACAIDAWPKVSDHFPFIYCVEKLVTEHKYDKWETCYEKLNLNSKPVADCLSSGHGN 162




GO:0003824 "catalytic activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00024041001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (259 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 96
KOG3160220 consensus Gamma-interferon inducible lysosomal thi 99.37
PF03227108 GILT: Gamma interferon inducible lysosomal thiol r 98.08
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
Probab=99.37  E-value=6.1e-14  Score=107.41  Aligned_cols=64  Identities=36%  Similarity=0.650  Sum_probs=57.2

Q ss_pred             Cchhhhchhhhcccc-----ceeeeeccccCCCCChHHhHHHHcCCCcccchhhccCCcccHhhcCCCCccc
Q 039325            1 MAHLEACAIDIWPEL-----FIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAI   67 (96)
Q Consensus         1 LN~IEACAI~~~p~~-----FI~CmE~~~~~~~~~awe~Ca~~~gLd~~~I~~C~ns~~G~~L~~k~a~~~~   67 (96)
                      ||++|||+|+.+|++     ||.|+|.   ....++|++|+++++++++.|.+|++|++|++|+++++..+-
T Consensus       104 lN~LqaCvI~~l~~~~~~l~~i~C~~~---~~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~  172 (220)
T KOG3160|consen  104 LNKLQACVIDTLPDQSDQLPFIRCIQG---KQKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETA  172 (220)
T ss_pred             hhHHHHHHHHhhhchHhhhceehhhhc---ccchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhc
Confidence            799999999999875     9999998   356677999999999999999999999999999999985443



>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00