Citrus Sinensis ID: 039325
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 96 | ||||||
| 225434490 | 284 | PREDICTED: gamma-interferon-inducible ly | 0.541 | 0.183 | 0.701 | 1e-15 | |
| 225434492 | 259 | PREDICTED: gamma-interferon-inducible ly | 0.541 | 0.200 | 0.701 | 1e-15 | |
| 147805691 | 259 | hypothetical protein VITISV_012674 [Viti | 0.541 | 0.200 | 0.701 | 2e-15 | |
| 224103875 | 255 | predicted protein [Populus trichocarpa] | 0.552 | 0.207 | 0.568 | 1e-11 | |
| 449454993 | 223 | PREDICTED: gamma-interferon-inducible ly | 0.541 | 0.233 | 0.614 | 7e-11 | |
| 18390723 | 265 | GILT domain-containing protein [Arabidop | 0.552 | 0.2 | 0.551 | 7e-11 | |
| 8954038 | 262 | Contains similarity to an unknown protei | 0.552 | 0.202 | 0.551 | 8e-11 | |
| 224059859 | 220 | predicted protein [Populus trichocarpa] | 0.583 | 0.254 | 0.524 | 1e-10 | |
| 297843502 | 268 | hypothetical protein ARALYDRAFT_470730 [ | 0.552 | 0.197 | 0.534 | 2e-10 | |
| 226528114 | 247 | LOC100284511 precursor [Zea mays] gi|195 | 0.552 | 0.214 | 0.551 | 2e-10 |
| >gi|225434490|ref|XP_002275261.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 45/57 (78%), Gaps = 5/57 (8%)
Query: 4 LEACAIDIWPEL-----FIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYG 55
+EACAID+WP+L FIYC E+LVY+ KYPQ ETCFEKLGLD PI DCY SGYG
Sbjct: 122 VEACAIDVWPDLSQHFSFIYCIETLVYERKYPQWETCFEKLGLDPKPISDCYNSGYG 178
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434492|ref|XP_002275283.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera] gi|297745847|emb|CBI15903.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|147805691|emb|CAN76152.1| hypothetical protein VITISV_012674 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224103875|ref|XP_002313228.1| predicted protein [Populus trichocarpa] gi|222849636|gb|EEE87183.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449454993|ref|XP_004145238.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449472266|ref|XP_004153541.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449514550|ref|XP_004164407.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|18390723|ref|NP_563779.1| GILT domain-containing protein [Arabidopsis thaliana] gi|15146334|gb|AAK83650.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|15809756|gb|AAL06806.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|332189954|gb|AEE28075.1| GILT domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|8954038|gb|AAF82212.1|AC067971_20 Contains similarity to an unknown protein F7A7_100 gi|7327817 from Arabidopsis thaliana BAC F7A7 gb|AL161946. ESTs gb|N65842, gb|F19836 and gb|AI993679 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|224059859|ref|XP_002300002.1| predicted protein [Populus trichocarpa] gi|222847260|gb|EEE84807.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|297843502|ref|XP_002889632.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata] gi|297335474|gb|EFH65891.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|226528114|ref|NP_001150878.1| LOC100284511 precursor [Zea mays] gi|195642580|gb|ACG40758.1| gamma-interferon-inducible lysosomal thiol reductase precursor [Zea mays] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 96 | ||||||
| TAIR|locus:2007407 | 265 | AT1G07080 "AT1G07080" [Arabido | 0.552 | 0.2 | 0.551 | 1.6e-13 | |
| TAIR|locus:2149730 | 233 | OSH1 "AT5G01580" [Arabidopsis | 0.541 | 0.223 | 0.396 | 1.1e-06 |
| TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 4 LEACAIDIWPEL-----FIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGN 56
+EACAID WP++ FIYC E LV +HKY + ETC+EKL L+ P+ DC +SG+GN
Sbjct: 105 VEACAIDAWPKVSDHFPFIYCVEKLVTEHKYDKWETCYEKLNLNSKPVADCLSSGHGN 162
|
|
| TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00024041001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (259 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 96 | |||
| KOG3160 | 220 | consensus Gamma-interferon inducible lysosomal thi | 99.37 | |
| PF03227 | 108 | GILT: Gamma interferon inducible lysosomal thiol r | 98.08 |
| >KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-14 Score=107.41 Aligned_cols=64 Identities=36% Similarity=0.650 Sum_probs=57.2
Q ss_pred Cchhhhchhhhcccc-----ceeeeeccccCCCCChHHhHHHHcCCCcccchhhccCCcccHhhcCCCCccc
Q 039325 1 MAHLEACAIDIWPEL-----FIYCFESLVYKHKYPQGETCFEKLGLDLTPIIDCYTSGYGNLFLDKPVFPAI 67 (96)
Q Consensus 1 LN~IEACAI~~~p~~-----FI~CmE~~~~~~~~~awe~Ca~~~gLd~~~I~~C~ns~~G~~L~~k~a~~~~ 67 (96)
||++|||+|+.+|++ ||.|+|. ....++|++|+++++++++.|.+|++|++|++|+++++..+-
T Consensus 104 lN~LqaCvI~~l~~~~~~l~~i~C~~~---~~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~ 172 (220)
T KOG3160|consen 104 LNKLQACVIDTLPDQSDQLPFIRCIQG---KQKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETA 172 (220)
T ss_pred hhHHHHHHHHhhhchHhhhceehhhhc---ccchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 799999999999875 9999998 356677999999999999999999999999999999985443
|
|
| >PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00