Citrus Sinensis ID: 039353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
ksnkhrnyelkgsktDKVFNALGAISAAVVanapcllpemqstlrQPVVKNMRKALYVQFTVGLLFYYgipivgywaygstasvylpeqmSCVKWVKVFINSSVFLQSMVCQhvfispihetldtkflkleestfsreNIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGsfalipitfvfpSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV
Flexible Loop (DISEMBL)
ksnkhrnyelkgsktdkVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV
Low Complexity Region (SEG)
KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKrrfflrgflfafnifVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLvtvattvaavRFVIKDIHHYSFFTDV
Disordered region (IsUnstruct)
****************KVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFT**
Disordered Region (DISOPRED)
*****RN***KGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV
Disordered Region (DISEMBL)
KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV
Disordered Region (DISPRO)
*****RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFF***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
P92961	442	Proline transporter 1 OS=	yes	no	0.974	0.527	0.414	1e-51
Q69LA1	434	Probable proline transpor	no	no	0.979	0.539	0.405	1e-50
Q60DN5	473	Proline transporter 1 OS=	no	no	0.979	0.494	0.423	7e-50
P92962	439	Proline transporter 2 OS=	no	no	0.979	0.533	0.4	3e-49
Q9SJP9	436	Proline transporter 3 OS=	no	no	0.974	0.534	0.397	4e-44
Q8L4X4	452	Probable GABA transporter	no	no	0.974	0.515	0.284	7e-22
F4HW02	451	GABA transporter 1 OS=Ara	no	no	0.966	0.512	0.287	1e-21
Q9C6M2	440	Lysine histidine transpor	no	no	0.916	0.497	0.273	1e-12
Q9FKS8	446	Lysine histidine transpor	no	no	0.891	0.477	0.227	9e-11
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.945	0.470	0.258	3e-08

>sp|P92961|PROT1_ARATH Proline transporter 1 OS=Arabidopsis thaliana GN=PROT1 PE=1 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/234 (41%), Positives = 147/234 (62%), Gaps = 1/234 (0%)

Query: 6   RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
           R+YE++GS   K+F   GA +  V A    +LPE+Q+T+RQPVVKNM KALY QFT G+L
Sbjct: 210 RDYEIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTAGVL 269

Query: 66  FYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDT 125
             Y +  +GYWAYGS+ S YL   ++   WVK   N S  LQS++  H+F SP +E +DT
Sbjct: 270 PMYAVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLHIFASPTYEYMDT 329

Query: 126 KFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPS 185
           K+  ++ + F+ +N+  R   RG   A +  ++A  PF+GDF++L G+ +  P+TF+  +
Sbjct: 330 KY-GIKGNPFAIKNLLFRIMARGGYIAVSTLISALLPFLGDFMSLTGAVSTFPLTFILAN 388

Query: 186 MVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
            ++ K K N     +K WHW N++ FSL++VA  +AAVR +  D  ++  F D+
Sbjct: 389 HMYYKAKNNKLNAMQKLWHWLNVVFFSLMSVAAAIAAVRLIAVDSKNFHVFADL 442

Proline transporter that mediates proline and glycine betaine transport. May be involved in long-distance transport of proline and required for phloem loading, retrieval of proline leaking from the phloem, or in xylem-to-phloem transfer. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69LA1|PROT2_ORYSJ Probable proline transporter 2 OS=Oryza sativa subsp. japonica GN=LOC_Os07g01090 PE=2 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 144/234 (61%)

Query: 6   RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
           ++Y + GS + ++F  +GA++  V A    +LPE+Q+T+R PVVKNM KAL+ QFTVG L
Sbjct: 201 KDYTIPGSHSARIFTTIGAVANLVFAYNTGMLPEIQATIRPPVVKNMEKALWFQFTVGSL 260

Query: 66  FYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDT 125
             Y +  +GYWAYGS+ S YL   +    WVK   N S FLQ+++  H+F SP++E LDT
Sbjct: 261 PLYAVTFMGYWAYGSSTSSYLLNSVKGPVWVKAMANLSAFLQTVIALHIFASPMYEFLDT 320

Query: 126 KFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPS 185
           K+       F+  N+  R  +RG     N  VAA  PF+GDF++L G+ +  P+TFV  +
Sbjct: 321 KYGSGHGGPFAIHNVMFRVGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLAN 380

Query: 186 MVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
            +++ VK +     + +WHW N+  FSL+++A  VAA+R ++ D   Y  F D+
Sbjct: 381 HMYLMVKRHKLSTLQISWHWLNVAGFSLLSIAAAVAALRLIMVDSRTYHLFADL 434

Proline transporter that mediates proline transport across the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60DN5|PROT1_ORYSJ Proline transporter 1 OS=Oryza sativa subsp. japonica GN=PROT1 PE=2 SV=1

 Score =  197 bits (500), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 145/234 (61%)

Query: 6   RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
           ++Y + GS +D++F  +GA++  V A    +LPE+Q+T+R PVVKNM KAL+ QFTVG L
Sbjct: 240 KDYTIPGSHSDRIFTTIGAVANLVFAYNTGMLPEIQATIRPPVVKNMEKALWFQFTVGSL 299

Query: 66  FYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDT 125
             Y +  +GYWAYGS+ S YL   +    W+K   N S FLQ+++  H+F SP++E LDT
Sbjct: 300 PLYAVTFMGYWAYGSSTSSYLLNSVKGPIWIKTVANLSAFLQTVIALHIFASPMYEFLDT 359

Query: 126 KFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPS 185
           +F       F+  NI  R  +RG     N  VAA  PF+GDF++L G+ +  P+TFV  +
Sbjct: 360 RFGSGHGGPFAIHNIMFRVGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLAN 419

Query: 186 MVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
            +++ VK N   + +K WHW N++ FS ++VA  VAAVR +  D   Y  F D+
Sbjct: 420 HMYLTVKQNKMSIFRKCWHWLNVVGFSCLSVAAAVAAVRLITVDYSTYHLFADM 473

Proline transporter that mediates proline transport across the plasma membrane when expressed in a heterologous system (Xenopus oocytes).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P92962|PROT2_ARATH Proline transporter 2 OS=Arabidopsis thaliana GN=PROT2 PE=1 SV=1

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/235 (40%), Positives = 146/235 (62%), Gaps = 1/235 (0%)

Query: 5   HRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGL 64
            R+Y ++GS  +K+F   GA +  V A    +LPE+Q+T++QPVVKNM KALY QFTVG+
Sbjct: 206 ERDYNIQGSSINKLFTITGAAANLVFAFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGV 265

Query: 65  LFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLD 124
           L  Y +  +GYWAYGS+ S YL   +S   WVK   N S FLQS++  H+F SP +E +D
Sbjct: 266 LPMYAVTFIGYWAYGSSTSTYLLNSVSGPVWVKALANISAFLQSVISLHIFASPTYEYMD 325

Query: 125 TKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFP 184
           TK+  ++ S  + +N+  R   RG   A +  ++A  PF+GDF++L G+ +  P+TF+  
Sbjct: 326 TKY-GVKGSPLAMKNLLFRTVARGSYIAVSTLLSALLPFLGDFMSLTGAISTFPLTFILA 384

Query: 185 SMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
           + +++    +   + +K WHW N+  F L+++A  +AAVR +  D  ++  F DV
Sbjct: 385 NHMYLVAMNDELSLVQKLWHWLNVCFFGLMSLAAAIAAVRLISVDSKNFHVFADV 439

Proline transporter that mediates proline and glycine betaine transport. May be involved in the uptake of compatible solutes from the soil into the roots, or in retrieval of apoplastic amino acids delivered to the roots via the phloem. May be involved in delivery of proline to wounding sites. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJP9|PROT3_ARATH Proline transporter 3 OS=Arabidopsis thaliana GN=PROT3 PE=1 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 145/234 (61%), Gaps = 1/234 (0%)

Query: 6   RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
           R+YE++GS   K+F   GA +  V      +LPE+Q+T++QPVVKNM KALY QFTVG+L
Sbjct: 204 RDYEIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGVL 263

Query: 66  FYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDT 125
             + +  +GYWAYGS+ S YL   ++   WVK   N S  LQS++  H+F SP +E +DT
Sbjct: 264 PMFAVVFIGYWAYGSSTSPYLLNNVNGPLWVKALANISAILQSVISLHIFASPTYEYMDT 323

Query: 126 KFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPS 185
           KF  ++ +  + +N+  R   RG   A +  ++A  PF+GDF++L G+ +  P+TF+  +
Sbjct: 324 KF-GIKGNPLALKNLLFRIMARGGYIAVSTLLSALLPFLGDFMSLTGAVSTFPLTFILAN 382

Query: 186 MVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
            ++ K K N     +K  HW N++ FSL++VA  +AA+R +  D  ++  F D+
Sbjct: 383 HMYYKAKNNKLNTLQKLCHWLNVVFFSLMSVAAAIAALRLIALDSKNFHVFADL 436

Proline transporter that mediates proline and glycine betaine transport. When expressed in a heterologous system (yeast), imports L-proline, glycine betaine and GABA across the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=2 SV=1

 Score =  104 bits (259), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 17/250 (6%)

Query: 1   KSNKHRNYELKGSKTDKVFNALGAIS--AAVVANAPCLLPEMQSTLRQPVVKNMRKALYV 58
           K+   R Y L+ S + KVF+A  +IS  AA+  N   +LPE+Q+TL  P    M K L +
Sbjct: 204 KNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNG--ILPEIQATLAPPATGKMLKGLLL 261

Query: 59  QFTVGLLFYYGIPIVGYWAYGSTASV-----YLPEQMSCVKWVKVFINSSVF--LQSMVC 111
            ++V    +Y   I GYW +G+ +S       +P++   +  + V   + +F  LQ    
Sbjct: 262 CYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPTLAPIVVIGLAVIFVLLQLFAI 321

Query: 112 QHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLI 171
             V+    +E ++ K     +  FS+ N+  R  LR    AF  F+AA  PF GD   ++
Sbjct: 322 GLVYSQVAYEIMEKKSADTTKGIFSKRNLVPRLILRTLYMAFCGFMAAMLPFFGDINAVV 381

Query: 172 GSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAA---VRFVIK 228
           G+F  IP+ FV P +++      T   ++   +W N+ +  + T A  + A   +R ++ 
Sbjct: 382 GAFGFIPLDFVLPMLLYNMTYKPT---RRSFTYWINMTIMVVFTCAGLMGAFSSIRKLVL 438

Query: 229 DIHHYSFFTD 238
           D + +  F+ 
Sbjct: 439 DANKFKLFSS 448

May be involved in the transport of GABA.

Arabidopsis thaliana (taxid: 3702)

>sp|F4HW02|GAT1_ARATH GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 117/247 (47%), Gaps = 16/247 (6%)

Query: 5   HRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGL 64
            ++Y + G    +VF    A++         ++PE+Q+T+  PV   M K L + + V +
Sbjct: 209 EKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKGKMMKGLCMCYLVVI 268

Query: 65  LFYYGIPIVGYWAYGSTA-----SVYLPEQMS---CVKWVKVFINSSVFLQSMVCQHVFI 116
           + ++ + I GYWA+G  A     + +L  + +      W    +N    LQ      V++
Sbjct: 269 MTFFTVAITGYWAFGKKANGLIFTNFLNAETNHYFVPTWFIFLVNLFTVLQLSAVAVVYL 328

Query: 117 SPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFAL 176
            PI++ L++      +  FS  N+  R  +R         VAA  PF GD  +L+G+F  
Sbjct: 329 QPINDILESVISDPTKKEFSIRNVIPRLVVRSLFVVMATIVAAMLPFFGDVNSLLGAFGF 388

Query: 177 IPITFVFPSMVFIKVKANTARVKKKAW-HWFNILL---FSLVTVATTVAAVRFVIKDIHH 232
           IP+ FV P + F      T +  KK++  W N ++   FS + V   VAAVR +I D + 
Sbjct: 389 IPLDFVLPVVFF----NFTFKPSKKSFIFWINTVIAVVFSCLGVIAMVAAVRQIIIDANT 444

Query: 233 YSFFTDV 239
           Y  F DV
Sbjct: 445 YKLFADV 451

High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8-aminocaprylic acid, but does not mediate the transport of proline or glycine betaine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 11/230 (4%)

Query: 12  GSKTDKVFNALGAISAAVVANAPCLLPE--MQSTLRQPVVKNMRKALYVQFTVGLLFYYG 69
           G  T +VFNALG IS A   +A  L  +  M ST  +P    M + +   + V  + Y+ 
Sbjct: 216 GDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFP 275

Query: 70  IPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK 129
           + ++ YWA+G      +   +    W+    N  V +  +    VF  P+ + L+    +
Sbjct: 276 VALICYWAFGQDVDDNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLE----R 331

Query: 130 LEESTFS-RENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVF 188
           +  + F  +  +  RFF R    AF +F+  +FPF GD +   G F   P +F  PS+++
Sbjct: 332 MMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMW 391

Query: 189 IKVKANTARVKKKAW--HWFNILLFSLVTVATTVAAVRFVIKDIHHYSFF 236
           + +K    R     W  +W +I++   + +A+T+  +R +I D   YSF+
Sbjct: 392 LIIK--KPRRFSVTWFVNWISIIVGVFIMLASTIGGLRNIIADSSTYSFY 439

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 11/224 (4%)

Query: 19  FNALGAISAAVVANAPCLLPEMQSTL----RQPVVKNMRKALYVQFTVGLLFYYGIPIVG 74
           F+ LG ++ A   +   L  E+Q+T+     +P    M + + V + V  L Y+ + +VG
Sbjct: 229 FSGLGDVAFAYAGHNVVL--EIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVG 286

Query: 75  YWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEEST 134
           Y+ +G+     +   +    W+    N  V +  +    ++  P+ + ++T  L +++  
Sbjct: 287 YYIFGNGVEDNILMSLKKPAWLIATANIFVVIHVIGSYQIYAMPVFDMMET--LLVKKLN 344

Query: 135 FSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKAN 194
           F R     RFF+R F  A  +FV   FPF G  +   G FA  P T+  P ++++ +   
Sbjct: 345 F-RPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIY-K 402

Query: 195 TARVKKKAW-HWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFT 237
             +     W +W  I+    + V + +  +R ++     Y F++
Sbjct: 403 PKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFYS 446

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 110/271 (40%), Gaps = 45/271 (16%)

Query: 6   RNYELKGSKTD-------------------KVFNALGAISAAVVANAPCLLPEMQSTLRQ 46
            N E+KGS T                    + F +LG I+ A   +   +L E+Q T++ 
Sbjct: 211 ENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAY--SYSMILIEIQDTVKS 268

Query: 47  P--VVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVK--WVKVFINS 102
           P   V  MRKA +V   V  +FY     VGY A+G  A   L          W+    N 
Sbjct: 269 PPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANL 328

Query: 103 SVFLQSMVCQHVFISPIHETLDTKF-LKLEESTFSRENIKRRFFLRGFLFAFNIF----- 156
           ++ +  +    V+  P+   ++ +   +  ES F  + IK + F  G  F  N+F     
Sbjct: 329 AIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQLF-PGKPFNLNLFRLVWR 387

Query: 157 ---------VAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFN 207
                    ++   PF  D V L+G+    P+T  FP  ++I  K N  R   K W    
Sbjct: 388 TFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQK-NVPRWGTK-WVCLQ 445

Query: 208 ILLFSL--VTVATTVAAVRFVIKDIHHYSFF 236
           +L  +   V+VA    +V  ++ D+  Y  F
Sbjct: 446 VLSVTCLFVSVAAAAGSVIGIVSDLKVYKPF 476

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
356513654	401	PREDICTED: lysine histidine transporter	0.995	0.593	0.626	8e-89
356565252	449	PREDICTED: lysine histidine transporter-	0.995	0.530	0.617	8e-88
356513652	450	PREDICTED: lysine histidine transporter-	0.995	0.528	0.606	1e-85
242055335	442	hypothetical protein SORBIDRAFT_03g04328	1.0	0.540	0.518	2e-73
414879110	446	TPA: hypothetical protein ZEAMMB73_63214	1.0	0.535	0.516	8e-72
20804893	447	proline transport protein-like [Oryza sa	1.0	0.534	0.525	7e-71
388517879	434	unknown [Lotus japonicus]	0.841	0.463	0.606	7e-70
326495360	445	predicted protein [Hordeum vulgare subsp	0.995	0.534	0.537	1e-66
332144260	442	proline transporter [Elaeis guineensis]	0.995	0.538	0.420	2e-54
318612464	442	proline transporter 2 [Vigna unguiculata	0.974	0.527	0.440	1e-51

>gi|356513654|ref|XP_003525526.1| PREDICTED: lysine histidine transporter 2-like [Glycine max]

 Score =  332 bits (851), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 149/238 (62%), Positives = 193/238 (81%)

Query: 1   KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQF 60
           KS  +R+Y+L GS+  KVFNA GAISA +VAN   LLPE+QSTLR+P VKNMRKALY+Q+
Sbjct: 163 KSRSNRDYDLSGSEVSKVFNAFGAISAIIVANTSGLLPEIQSTLRKPAVKNMRKALYLQY 222

Query: 61  TVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIH 120
           TVG+LFYYG+ ++GYWAYG+  S YLPE +S  KW+ V IN+ VFLQS+V QH+F++PIH
Sbjct: 223 TVGVLFYYGVTVMGYWAYGTMVSAYLPENLSGPKWINVLINAIVFLQSIVSQHMFVAPIH 282

Query: 121 ETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPIT 180
           E LDTKFL+++++  S EN+KR F LR F F  N FVAAAFPF+GDFVN +GSF+L+P+T
Sbjct: 283 EALDTKFLEIDKAMHSGENLKRLFLLRAFFFTGNTFVAAAFPFMGDFVNFLGSFSLVPLT 342

Query: 181 FVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTD 238
           F+FPSMVFIKVK  TAR++KKAWHWFNI+   L+T+ATT++A+R ++ +I  Y FF D
Sbjct: 343 FMFPSMVFIKVKGRTARIEKKAWHWFNIVFSFLLTIATTISAIRLIVNNIQKYHFFAD 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565252|ref|XP_003550856.1| PREDICTED: lysine histidine transporter-like 2-like [Glycine max]

 Score =  329 bits (843), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 147/238 (61%), Positives = 191/238 (80%)

Query: 1   KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQF 60
           KSN +R+Y++ GS+  K+FNA GAISA +V N   LLPE+QSTLR+P VKNMRKALY+Q+
Sbjct: 211 KSNSNRDYDISGSEVSKIFNAFGAISAVIVTNTSGLLPEIQSTLRKPAVKNMRKALYLQY 270

Query: 61  TVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIH 120
           TVG+LFYYG+ ++GYWAYG+  S YLPE +S  KW+ V IN+ VFLQS+V QH+F++PIH
Sbjct: 271 TVGVLFYYGVTVIGYWAYGTMVSAYLPENLSGPKWINVLINAIVFLQSIVSQHMFVAPIH 330

Query: 121 ETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPIT 180
           E LDTKFL++++   S EN+KR F LR F F  N FVAAAFPF+ DFVN +GSF+L+P+T
Sbjct: 331 EALDTKFLEIDKPMHSGENLKRLFLLRAFFFTGNTFVAAAFPFMSDFVNFLGSFSLVPLT 390

Query: 181 FVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTD 238
           F+FPSMVFIKVK  TAR++KKAWHWFNI+   L+T+ATT++AVR ++ +I  Y FF D
Sbjct: 391 FMFPSMVFIKVKGRTARIEKKAWHWFNIVFSFLLTIATTISAVRLIVNNIQKYHFFAD 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513652|ref|XP_003525525.1| PREDICTED: lysine histidine transporter-like 2-like [Glycine max]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 145/239 (60%), Positives = 192/239 (80%), Gaps = 1/239 (0%)

Query: 1   KSNKHRNYELKGSKT-DKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQ 59
           +SN +R+Y++  S+  +KVFNA GAISA +V N   LLPE+QSTLR+P +KNMRKALY+Q
Sbjct: 211 RSNSNRDYDIGESEVMNKVFNAFGAISAIIVCNTSGLLPEIQSTLRKPAMKNMRKALYLQ 270

Query: 60  FTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119
           +TVG+LFYYG+ ++GYWAYGS  S YLPE +S  KW+ V IN+ VFLQS+V QH+F++PI
Sbjct: 271 YTVGVLFYYGVTVMGYWAYGSMVSAYLPENLSGPKWIDVLINAIVFLQSIVTQHMFVAPI 330

Query: 120 HETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPI 179
           HE LDTKFL+++++  S EN+KR F LR   F  N FVAAAFPF+GDFVN +GSF+L+P+
Sbjct: 331 HEALDTKFLEIDKAMHSGENLKRLFLLRALFFTGNTFVAAAFPFMGDFVNFLGSFSLVPL 390

Query: 180 TFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTD 238
           TF+FPSMVFIKVK  TAR++KKAWHWFNI+   L+T+ATT++A+R ++ +I  Y FF D
Sbjct: 391 TFMFPSMVFIKVKGRTARIEKKAWHWFNIVFSFLLTIATTISAIRLIVNNIQKYHFFAD 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055335|ref|XP_002456813.1| hypothetical protein SORBIDRAFT_03g043280 [Sorghum bicolor] gi|241928788|gb|EES01933.1| hypothetical protein SORBIDRAFT_03g043280 [Sorghum bicolor]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 168/239 (70%)

Query: 1   KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQF 60
           KSNK ++Y + G++ +KVFNALGA++A VV N   LLPE+QST+R+P V+ MR+AL +Q+
Sbjct: 204 KSNKQKDYNVHGTQAEKVFNALGAVAAIVVCNTSGLLPEIQSTVREPAVRGMRRALLLQY 263

Query: 61  TVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIH 120
           T G   YYGI + GYWAYGS  S YLP ++   +W  V IN++ FLQS+V QH+F  PIH
Sbjct: 264 TAGAAGYYGISVAGYWAYGSAVSEYLPNELGGPRWAAVLINATAFLQSIVSQHLFTVPIH 323

Query: 121 ETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPIT 180
           E +DT+  +L+E  FSR N+ RR   RG +F FN+FV A FPF+GDFVNL+GSFAL+P+T
Sbjct: 324 EAMDTRLQRLDEGMFSRYNLTRRLCARGLVFGFNVFVTALFPFMGDFVNLVGSFALVPLT 383

Query: 181 FVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
           F FPSM  +K+K  +     + WHW  I+  S++ VATT AAVR +  +   Y FF D+
Sbjct: 384 FTFPSMAILKIKGKSGGRCNRLWHWGIIVFSSVLCVATTAAAVRLIFNNARIYHFFADM 442

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879110|tpg|DAA56241.1| TPA: hypothetical protein ZEAMMB73_632148 [Zea mays]

 Score =  276 bits (705), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 1/240 (0%)

Query: 1   KSNKHRNYEL-KGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQ 59
           KSNK ++Y++  GS+ +KVFNALGA++A +V N   LLPE+QST+R+P V+ MR+AL +Q
Sbjct: 207 KSNKQKDYDVHAGSQAEKVFNALGAVAAILVCNTSGLLPEIQSTVREPAVRGMRRALLLQ 266

Query: 60  FTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119
           +T G   YYGI + GYWAYGS  S YLP ++   +W  V IN++ FLQS+V QH+F  PI
Sbjct: 267 YTAGAAGYYGISVAGYWAYGSAVSEYLPNELGGPRWAAVLINATAFLQSIVSQHLFTVPI 326

Query: 120 HETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPI 179
           HE +DT+  +L+E  FSR N+ RR   RG +F FN+FV A FPF+GDFVNL+GS AL+P+
Sbjct: 327 HEAMDTRLQRLDEGMFSRYNLTRRVCARGLVFGFNVFVTALFPFMGDFVNLVGSLALVPL 386

Query: 180 TFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
           TF FPSM  +K+K  +     + WHW  I+L S + VATT AAVR +  +   Y FF D+
Sbjct: 387 TFTFPSMAVLKIKGKSGGRCNRLWHWGIIVLSSALCVATTAAAVRLIFNNARIYHFFADM 446

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20804893|dbj|BAB92574.1| proline transport protein-like [Oryza sativa Japonica Group] gi|20804928|dbj|BAB92607.1| putative betaine/proline transporter [Oryza sativa Japonica Group] gi|56785119|dbj|BAD82757.1| putative betaine/proline transporter [Oryza sativa Japonica Group] gi|215768866|dbj|BAH01095.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189572|gb|EEC71999.1| hypothetical protein OsI_04856 [Oryza sativa Indica Group] gi|222619722|gb|EEE55854.1| hypothetical protein OsJ_04479 [Oryza sativa Japonica Group]

 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 167/240 (69%), Gaps = 1/240 (0%)

Query: 1   KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQF 60
           KSNK ++Y + G++ +KVF A GAI+A +V N   LLPE+QSTLR+PVV NMR+AL +Q+
Sbjct: 208 KSNKQKDYNVHGTQAEKVFGAFGAIAAILVCNTSGLLPEIQSTLRKPVVSNMRRALLLQY 267

Query: 61  TVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIH 120
           T G   YYGI + GYWAYG+  S YLP+Q+S   W  V IN++ FLQS+V QH+F  PIH
Sbjct: 268 TAGAAVYYGISVAGYWAYGAAVSEYLPDQLSGPSWATVLINATAFLQSIVSQHLFTVPIH 327

Query: 121 ETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPIT 180
           E LDT+  +L+E  FSR N+ RR   RG +F  N FV A FPF+GDFVNL GSF L P+T
Sbjct: 328 EALDTQMQRLDEGMFSRYNLGRRLLARGLVFGANAFVTALFPFMGDFVNLFGSFVLFPLT 387

Query: 181 FVFPSMVFIKVKA-NTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
           F+FPSMV +K+K  + A    + WHW  I+  S+++V TT AAVR ++ +   Y FF D+
Sbjct: 388 FMFPSMVVLKIKGKDEAGRWNRIWHWGIIVASSVLSVVTTAAAVRLIVHNASVYHFFADM 447

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517879|gb|AFK47001.1| unknown [Lotus japonicus]

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 122/201 (60%), Positives = 158/201 (78%)

Query: 1   KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQF 60
           KS  +++++L GS+ +KVFN  GA+SA +V N   LL E+QSTLR P VKNMRKALY Q+
Sbjct: 220 KSKSNKDFDLMGSEVNKVFNGFGAVSAVIVCNTGGLLLEIQSTLRAPAVKNMRKALYSQY 279

Query: 61  TVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIH 120
           +VGL+ YYG+ I+GYWAYGS  + YLPE +S  +W+ V IN+ VFLQS+V QH+F++PIH
Sbjct: 280 SVGLMLYYGVTIMGYWAYGSMVTAYLPENLSGPRWINVLINAIVFLQSIVSQHMFVAPIH 339

Query: 121 ETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPIT 180
           E LDTKFL+L ++  S EN++R F +R F F+ N  VAAAFPF+GDFVNL+GSF L+P+T
Sbjct: 340 EALDTKFLELGKAMHSGENLRRLFLIRAFFFSGNTLVAAAFPFMGDFVNLLGSFTLVPLT 399

Query: 181 FVFPSMVFIKVKANTARVKKK 201
           FVFPSMVFIKVK  TAR +KK
Sbjct: 400 FVFPSMVFIKVKGKTARAEKK 420

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326495360|dbj|BAJ85776.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326509541|dbj|BAJ91687.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 167/238 (70%)

Query: 1   KSNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQF 60
           +SN+ R+Y + G+  +KVFNALGA++A +V N   LLPE+QSTLR+P V NMR+AL +Q+
Sbjct: 207 RSNERRDYGIHGTGAEKVFNALGAVAAILVCNTSGLLPEIQSTLRKPSVANMRRALALQY 266

Query: 61  TVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIH 120
           TVG   YYGI + GYWAYG+ AS YLP Q+S  +W  V IN++ FLQS+V QH+F  PIH
Sbjct: 267 TVGAAGYYGISVAGYWAYGAAASEYLPNQLSGPRWASVLINATAFLQSIVSQHLFTVPIH 326

Query: 121 ETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPIT 180
           E +DT   +LEE  FSR N+ RR   RG LF  NIFV A FPF+GDFVNL GSFAL P+T
Sbjct: 327 EAMDTGLQRLEEGMFSRYNMTRRLLARGVLFGVNIFVTALFPFMGDFVNLFGSFALFPLT 386

Query: 181 FVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTD 238
           F+FPSM+ +K+K        + WHW  I++ S V +AT+ AAVR ++ +   Y FF D
Sbjct: 387 FMFPSMIILKIKGECDGRLGRVWHWGIIVVSSAVGLATSAAAVRLILHNASVYRFFAD 444

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332144260|dbj|BAK19791.1| proline transporter [Elaeis guineensis] gi|332144262|dbj|BAK19792.1| proline transporter [Elaeis guineensis]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 152/238 (63%)

Query: 2   SNKHRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFT 61
           S   +NY + GS   K+F+ +GA+++ V A    +LPE+Q+T++ PVVKNM KAL +QFT
Sbjct: 205 STPSQNYNIPGSHVSKIFSMVGAVASLVFAFNTGMLPEIQATIKPPVVKNMEKALRLQFT 264

Query: 62  VGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHE 121
           VG+L  Y +  +GYWAYGS+ S YL   +    WVK   N + F Q+++  H+F SP++E
Sbjct: 265 VGVLPLYAVTFIGYWAYGSSTSTYLLNSVKGPTWVKAVANIAAFFQTVIALHIFASPMYE 324

Query: 122 TLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITF 181
            LDTK+ + + S FS +NI  R  +RG     N FVAA  PF+GDF+ L G+ ++ P+TF
Sbjct: 325 YLDTKYGRGKRSAFSVDNISFRVLVRGGYLTINTFVAAFLPFLGDFMTLTGALSVFPLTF 384

Query: 182 VFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
           V  + +++K + N     +KAWHW N++ FS + VA+ +A +R ++ D   Y FF D+
Sbjct: 385 VLANHMYLKARKNELPASQKAWHWLNVIGFSCLAVASAIAGLRLIVVDSRTYHFFADL 442

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|318612464|dbj|BAG06274.2| proline transporter 2 [Vigna unguiculata]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 149/234 (63%), Gaps = 1/234 (0%)

Query: 6   RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
           R+Y L G    KVF  +GA +  V A    +LPE+Q+T+RQPVVKNM +ALY QFTVG+L
Sbjct: 210 RDYNLLGDGFSKVFTIIGASANLVFAFNTGMLPEIQATIRQPVVKNMMRALYFQFTVGVL 269

Query: 66  FYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDT 125
             Y +   GYWAYGS  SVYL   ++   WVK F N + FLQS++  H+F SP++E LDT
Sbjct: 270 PLYLVTFTGYWAYGSKTSVYLLNSVNGPVWVKAFANITAFLQSVIALHIFASPMYEFLDT 329

Query: 126 KFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPS 185
           K+  ++ S  + +N+  R  +RG   AFN FV+A  PF+GDF++L G+ +  P+TF+  +
Sbjct: 330 KY-GIKGSALNVKNMSFRIVVRGGYLAFNTFVSAFLPFLGDFMSLTGAISTFPLTFILAN 388

Query: 186 MVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHYSFFTDV 239
            +++K K +     +K WHW NI  FS+++   T+AA+R +  D  +Y  F DV
Sbjct: 389 HMYLKAKKDKLTTSQKLWHWLNIGFFSIMSFVATIAAIRLIAVDSKNYHVFADV 442

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2061156	442	PROT1 "proline transporter 1"	0.974	0.527	0.376	1.5e-44
TAIR|locus:2078981	439	PROT2 "proline transporter 2"	0.987	0.537	0.369	3.5e-43
TAIR|locus:2044835	436	ProT3 "proline transporter 3"	0.974	0.534	0.363	1.1e-41
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.962	0.509	0.264	3.7e-19
TAIR|locus:2152995	452	AT5G41800 [Arabidopsis thalian	0.970	0.513	0.257	1.3e-17
TAIR|locus:2031215	440	AT1G25530 [Arabidopsis thalian	0.920	0.5	0.235	4.9e-14
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.937	0.507	0.236	6.3e-14
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.962	0.521	0.232	4.3e-11
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.949	0.514	0.226	7e-11
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.811	0.433	0.237	5.5e-08

TAIR|locus:2061156 PROT1 "proline transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 88/234 (37%), Positives = 134/234 (57%)

Query:     6 RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
             R+YE++GS   K+F   GA +  V A    +LPE+Q+T+RQPVVKNM KALY QFT G+L
Sbjct:   210 RDYEIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTAGVL 269

Query:    66 FYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDT 125
               Y +  +GYWAYGS+ S YL   ++   WVK   N S  LQS++  H+F SP +E +DT
Sbjct:   270 PMYAVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLHIFASPTYEYMDT 329

Query:   126 KFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIGSFALIPITFVFPS 185
             K+  ++ + F+ +N+                ++A  PF+GDF++L G+ +  P+TF+  +
Sbjct:   330 KY-GIKGNPFAIKNLLFRIMARGGYIAVSTLISALLPFLGDFMSLTGAVSTFPLTFILAN 388

Query:   186 MVFIKVKANTARVKKKAWHWFNILLFSLXXXXXXXXXXRFVIKDIHHYSFFTDV 239
              ++ K K N     +K WHW N++ FSL          R +  D  ++  F D+
Sbjct:   389 HMYYKAKNNKLNAMQKLWHWLNVVFFSLMSVAAAIAAVRLIAVDSKNFHVFADL 442

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI

TAIR|locus:2078981 PROT2 "proline transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 88/238 (36%), Positives = 135/238 (56%)

Query:     3 NK-HRNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFT 61
             NK  R+Y ++GS  +K+F   GA +  V A    +LPE+Q+T++QPVVKNM KALY QFT
Sbjct:   203 NKPERDYNIQGSSINKLFTITGAAANLVFAFNTGMLPEIQATVKQPVVKNMMKALYFQFT 262

Query:    62 VGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHE 121
             VG+L  Y +  +GYWAYGS+ S YL   +S   WVK   N S FLQS++  H+F SP +E
Sbjct:   263 VGVLPMYAVTFIGYWAYGSSTSTYLLNSVSGPVWVKALANISAFLQSVISLHIFASPTYE 322

Query:   122 TLDTKFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIGSFALIPITF 181
              +DTK+  ++ S  + +N+                ++A  PF+GDF++L G+ +  P+TF
Sbjct:   323 YMDTKY-GVKGSPLAMKNLLFRTVARGSYIAVSTLLSALLPFLGDFMSLTGAISTFPLTF 381

Query:   182 VFPSMVFIKVKANTARVKKKAWHWFNILLFSLXXXXXXXXXXRFVIKDIHHYSFFTDV 239
             +  + +++    +   + +K WHW N+  F L          R +  D  ++  F DV
Sbjct:   382 ILANHMYLVAMNDELSLVQKLWHWLNVCFFGLMSLAAAIAAVRLISVDSKNFHVFADV 439

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=IGI;RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

TAIR|locus:2044835 ProT3 "proline transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 85/234 (36%), Positives = 132/234 (56%)

Query:     6 RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
             R+YE++GS   K+F   GA +  V      +LPE+Q+T++QPVVKNM KALY QFTVG+L
Sbjct:   204 RDYEIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGVL 263

Query:    66 FYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDT 125
               + +  +GYWAYGS+ S YL   ++   WVK   N S  LQS++  H+F SP +E +DT
Sbjct:   264 PMFAVVFIGYWAYGSSTSPYLLNNVNGPLWVKALANISAILQSVISLHIFASPTYEYMDT 323

Query:   126 KFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIGSFALIPITFVFPS 185
             KF  ++ +  + +N+                ++A  PF+GDF++L G+ +  P+TF+  +
Sbjct:   324 KF-GIKGNPLALKNLLFRIMARGGYIAVSTLLSALLPFLGDFMSLTGAVSTFPLTFILAN 382

Query:   186 MVFIKVKANTARVKKKAWHWFNILLFSLXXXXXXXXXXRFVIKDIHHYSFFTDV 239
              ++ K K N     +K  HW N++ FSL          R +  D  ++  F D+
Sbjct:   383 HMYYKAKNNKLNTLQKLCHWLNVVFFSLMSVAAAIAALRLIALDSKNFHVFADL 436

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI;RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 3.7e-19, P = 3.7e-19
 Identities = 65/246 (26%), Positives = 109/246 (44%)

Query:     6 RNYELKGSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVVKNMRKALYVQFTVGLL 65
             ++Y + G    +VF    A++         ++PE+Q+T+  PV   M K L + + V ++
Sbjct:   210 KDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKGKMMKGLCMCYLVVIM 269

Query:    66 FYYGIPIVGYWAYGSTASV-----YLPEQMS---CVKWVKVFINSSVFLQSMVCQHVFIS 117
              ++ + I GYWA+G  A+      +L  + +      W    +N    LQ      V++ 
Sbjct:   270 TFFTVAITGYWAFGKKANGLIFTNFLNAETNHYFVPTWFIFLVNLFTVLQLSAVAVVYLQ 329

Query:   118 PIHETLDTKFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIGSFALI 177
             PI++ L++      +  FS  N+                VAA  PF GD  +L+G+F  I
Sbjct:   330 PINDILESVISDPTKKEFSIRNVIPRLVVRSLFVVMATIVAAMLPFFGDVNSLLGAFGFI 389

Query:   178 PITFVFPSMVFIKVKANTARVKKKAW-HWFNILL---FSLXXXXXXXXXXRFVIKDIHHY 233
             P+ FV P +VF      T +  KK++  W N ++   FS           R +I D + Y
Sbjct:   390 PLDFVLP-VVFFNF---TFKPSKKSFIFWINTVIAVVFSCLGVIAMVAAVRQIIIDANTY 445

Query:   234 SFFTDV 239
               F DV
Sbjct:   446 KLFADV 451

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

TAIR|locus:2152995 AT5G41800 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 64/249 (25%), Positives = 112/249 (44%)

Query:     1 KSNKHRNYELKGSKTDKVFNALGAIS--AAVVANAPCLLPEMQSTLRQPVVKNMRKALYV 58
             K+   R Y L+ S + KVF+A  +IS  AA+  N   +LPE+Q+TL  P    M K L +
Sbjct:   204 KNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNG--ILPEIQATLAPPATGKMLKGLLL 261

Query:    59 QFTVGLLFYYGIPIVGYWAYGSTASV-----YLPEQMSCVKWVKVFINSSVF--LQSMVC 111
              ++V    +Y   I GYW +G+ +S       +P++   +  + V   + +F  LQ    
Sbjct:   262 CYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPTLAPIVVIGLAVIFVLLQLFAI 321

Query:   112 QHVFISPIHETLDTKFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLI 171
               V+    +E ++ K     +  FS+ N+                +AA  PF GD   ++
Sbjct:   322 GLVYSQVAYEIMEKKSADTTKGIFSKRNLVPRLILRTLYMAFCGFMAAMLPFFGDINAVV 381

Query:   172 GSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNI---LLFSLXXXXXXXXXXRFVIK 228
             G+F  IP+ FV P +++      T R      +W N+   ++F+           R ++ 
Sbjct:   382 GAFGFIPLDFVLPMLLYNMTYKPTRR---SFTYWINMTIMVVFTCAGLMGAFSSIRKLVL 438

Query:   229 DIHHYSFFT 237
             D + +  F+
Sbjct:   439 DANKFKLFS 447

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 54/229 (23%), Positives = 95/229 (41%)

Query:    12 GSKTDKVFNALGAISAAVVANAPCLLPE--MQSTLRQPVVKNMRKALYVQFTVGLLFYYG 69
             G  T +VFNALG IS A   +A  L  +  M ST  +P    M + +   + V  + Y+ 
Sbjct:   216 GDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFP 275

Query:    70 IPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK 129
             + ++ YWA+G      +   +    W+    N  V +  +    VF  P+ + L+   + 
Sbjct:   276 VALICYWAFGQDVDDNVLMNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLER--MM 333

Query:   130 LEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFI 189
             + +  F +  +                +  +FPF GD +   G F   P +F  PS++++
Sbjct:   334 VNKFGF-KHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWL 392

Query:   190 KVKANTARVKKKAW--HWFNILLFSLXXXXXXXXXXRFVIKDIHHYSFF 236
              +K    R     W  +W +I++             R +I D   YSF+
Sbjct:   393 IIKK--PRRFSVTWFVNWISIIVGVFIMLASTIGGLRNIIADSSTYSFY 439

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 187 (70.9 bits), Expect = 6.3e-14, P = 6.3e-14
 Identities = 57/241 (23%), Positives = 105/241 (43%)

Query:     7 NYELKGS-KTDKVF---NALGAISAAVVANAPCLLPEMQSTL----RQPVVKNMRKALYV 58
             +Y L+ +  T KVF   +ALG ++ A   +   L  E+Q+T+     +P  K M K + V
Sbjct:   208 DYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVL--EIQATIPSTPEKPSKKPMWKGVVV 265

Query:    59 QFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISP 118
              + +  L Y+ + +VGYWA+G+     +   +S  KW+    N  V +  +    ++  P
Sbjct:   266 AYIIVALCYFPVALVGYWAFGNHVDDNILITLSRPKWLIALANMMVVIHVIGSYQIYAMP 325

Query:   119 IHETLDTKFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIGSFALIP 178
             + + ++T  +K  +  F    +                +A  FPF G  +   G FA  P
Sbjct:   326 VFDMIETVLVK--KLRFP-PGLTLRLIARTLYVAFTMFIAITFPFFGGLLGFFGGFAFAP 382

Query:   179 ITFVFPSMVFIKVKANTARVKKKAW--HWFNILLFSLXXXXXXXXXXRFVIKDIHHYSFF 236
              T+  P ++++ +     R    +W  +W  I+L  +          R +I D   Y F+
Sbjct:   383 TTYFLPCIMWLAIYK--PRRFSLSWFTNWICIILGVMLMILSPIGGLRQIIIDAKTYKFY 440

Query:   237 T 237
             +
Sbjct:   441 S 441

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 58/249 (23%), Positives = 107/249 (42%)

Query:     1 KSNKHRN--YELKGSKTD-KVFNALGAISAAVVANAPC-LLPEMQSTL----RQPVVKNM 52
             K   H N  Y  + S T   VFN L A+     A A   ++ E+Q+T+     +P    M
Sbjct:   200 KKGVHPNVDYSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAM 259

Query:    53 RKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQ 112
              K + V + V  + Y+ +  V Y+ +G++    +   +    W+    N+ V +  +   
Sbjct:   260 WKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDNILMTLEKPIWLIAIANAFVVVHVIGSY 319

Query:   113 HVFISPIHETLDTKFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIG 172
              ++  P+ + L+T FL +++  F+  + K               VA   PF G  +   G
Sbjct:   320 QIYAMPVFDMLET-FL-VKKMMFA-PSFKLRFITRTLYVAFTMFVAICIPFFGGLLGFFG 376

Query:   173 SFALIPITFVFPSMVFIKVKANTARVKKK--AW--HWFNILLFSLXXXXXXXXXXRFVIK 228
              FA  P T+  P ++++ +K    + KK   +W  +WF I++  +          R +I 
Sbjct:   377 GFAFAPTTYYLPCIMWLCIK----KPKKYGLSWCINWFCIVVGVILTILAPIGGLRTIII 432

Query:   229 DIHHYSFFT 237
                +Y FF+
Sbjct:   433 SAKNYEFFS 441

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 54/238 (22%), Positives = 99/238 (41%)

Query:     7 NYELKGSKTD--KVFNALGAISAAVVANAPC-LLPEMQSTL----RQPVVKNMRKALYVQ 59
             +Y  + S TD  KVFN L A+     A A   ++ E+Q+T+      P    M + + V 
Sbjct:   208 DYSPRAS-TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVA 266

Query:    60 FTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPI 119
             + V  + Y+ +  +GY+ +G++    +   +    W+    N  V +  +    +F  P+
Sbjct:   267 YIVVAICYFPVAFLGYYIFGNSVDDNILITLEKPIWLIAMANMFVVIHVIGSYQIFAMPV 326

Query:   120 HETLDTKFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDFVNLIGSFALIPI 179
              + L+T  +K  +  F+  + K               VA   PF G  +   G FA  P 
Sbjct:   327 FDMLETVLVK--KMNFN-PSFKLRFITRSLYVAFTMIVAICVPFFGGLLGFFGGFAFAPT 383

Query:   180 TFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLXXXXXXXXXXRFVIKDIHHYSFFT 237
             T+  P ++++ +K           +WF I++  L          R +I +   Y FF+
Sbjct:   384 TYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLRTIIINAKTYKFFS 441

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 52/219 (23%), Positives = 91/219 (41%)

Query:     1 KSNKHR--NYELKG----SKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQ----PVVK 50
             K  +HR   Y ++G    S     FN +G I+ A   ++  L  E+Q+T+      P  K
Sbjct:   207 KGTEHRPSTYGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVL--EIQATIPSTPEVPSKK 264

Query:    51 NMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMV 110
              M K + V + + ++ Y  + I GYWA+G+     +   +    W+    N  VF+  + 
Sbjct:   265 PMWKGVVVAYIIVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAANFMVFIHVIG 324

Query:   111 CQHVFISPIHETLDT---KFLKLEESTFSRENIKXXXXXXXXXXXXXXXVAAAFPFIGDF 167
                VF   + +T+++   K LK   ST  R                   VA   PF G  
Sbjct:   325 SYQVFAMIVFDTIESYLVKTLKFTPSTTLR------LVARSTYVALICLVAVCIPFFGGL 378

Query:   168 VNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWF 206
             +   G       ++  P ++++ +K    R K+ + HW+
Sbjct:   379 LGFFGGLVFSSTSYFLPCIIWLIMK----RPKRFSAHWW 413

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb03g043280.1 hypothetical protein (442 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-24

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  100 bits (251), Expect = 1e-24
 Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 8/220 (3%)

Query: 12  GSKTDKVFNALGAISAAVVANAPCLLPEMQSTLRQPVV-KNMRKALYVQFTVGLLFYYGI 70
             K  ++F A+G I  A   +A  +L  +Q+T++ P   K M K L     +  + Y  +
Sbjct: 189 NIKLARLFLAIGIIVFAFEGHA--VLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILV 246

Query: 71  PIVGYWAYGSTASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL 130
            +VGY A+G+     +   +    W+    N  + L  ++   +   PI + ++    + 
Sbjct: 247 GLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRK 306

Query: 131 EESTFSRENIK-RRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFI 189
             S       K  R  +R  L      +A + PF+GDF++L+G+ +  P+TF+ P +  +
Sbjct: 307 GASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHL 366

Query: 190 KVKANTARVKKKAWHW----FNILLFSLVTVATTVAAVRF 225
           K+K    +  +K W         ++  L+ +A  VA +  
Sbjct: 367 KLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.97
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.96
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.95
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.64
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.13
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.0
PRK15132	403	tyrosine transporter TyrP; Provisional	98.83
PRK10483	414	tryptophan permease; Provisional	98.7
PRK09664	415	tryptophan permease TnaB; Provisional	98.53
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.5
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.47
PRK11021	410	putative transporter; Provisional	98.26
PRK10644	445	arginine:agmatin antiporter; Provisional	98.18
PRK10746	461	putative transport protein YifK; Provisional	98.15
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.1
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.08
PRK10655	438	potE putrescine transporter; Provisional	98.08
PRK11387	471	S-methylmethionine transporter; Provisional	98.05
PRK15049	499	L-asparagine permease; Provisional	97.93
PRK10249	458	phenylalanine transporter; Provisional	97.92
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.91
PRK10238	456	aromatic amino acid transporter; Provisional	97.89
TIGR00909	429	2A0306 amino acid transporter.	97.87
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.87
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.85
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.83
TIGR00913	478	2A0310 amino acid permease (yeast).	97.81
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.81
PRK10580	457	proY putative proline-specific permease; Provision	97.78
PRK10836	489	lysine transporter; Provisional	97.78
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.73
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.73
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.65
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.64
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.58
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	97.55
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.51
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.45
PRK15238	496	inner membrane transporter YjeM; Provisional	97.39
TIGR00930	953	2a30 K-Cl cotransporter.	97.34
TIGR00911	501	2A0308 L-type amino acid transporter.	97.23
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.14
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	96.27
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	95.27
TIGR00912	359	2A0309 spore germination protein (amino acid perme	94.98
KOG1286	554	consensus Amino acid transporters [Amino acid tran	94.49
KOG1289	550	consensus Amino acid transporters [Amino acid tran	94.31
COG0833	541	LysP Amino acid transporters [Amino acid transport	92.42
COG1457	442	CodB Purine-cytosine permease and related proteins	91.74
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	91.27
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	85.63

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-37  Score=276.14  Aligned_cols=204  Identities=15%  Similarity=0.181  Sum_probs=189.5

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHH---HHHHHHHHHHHHHHHhhhhhhhhccccccccccccCccc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMR---KALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSC   92 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~---~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~   92 (239)
                      ++.+++..+|+.+||| |.+++.+++++||+|+  +|.   .++..+|.++.++|+.+|.+||++|||++++.|+.|+|+
T Consensus       239 ~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~--~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~  316 (449)
T KOG1304|consen  239 GWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ--KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ  316 (449)
T ss_pred             chhhhHHHHHHHHHHhccceEEEehhhcccChh--hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc
Confidence            4778999999999999 9999999999999999  588   999999999999999999999999999999999999997


Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHh
Q 039353           93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIG  172 (239)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liG  172 (239)
                       +|+.+.+++++++.+.++||+|.+|..+++|+.++++- ++  .+.++..+.+|..+++++..+|.++|++++++||+|
T Consensus       317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~-~~--~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVG  392 (449)
T KOG1304|consen  317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKF-SE--NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVG  392 (449)
T ss_pred             -cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhc-Cc--chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHH
Confidence             89999999999999999999999999999999877542 11  346788899999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353          173 SFALIPITFVFPSMVFIKVKANTA---RVKKKAWHWFNILLFSLVTVATTVAAVRFV  226 (239)
Q Consensus       173 a~~~~~l~fi~P~l~~l~~~~~~~---~~~~~~~~~~~ii~G~~~~v~gt~~si~~l  226 (239)
                      |++++.+++++|+++++..++.+.   .+|+++.|.+++++|++.++.|||.|++++
T Consensus       393 s~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  393 SVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999999999987654   467889999999999999999999999874

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=9.9e-36  Score=271.84  Aligned_cols=205  Identities=12%  Similarity=0.056  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCc-ccChHH
Q 039353           19 FNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQM-SCVKWV   96 (239)
Q Consensus        19 ~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~-~~~~~~   96 (239)
                      .+++.++|+++||| ||.+.+++++|||||+.+|+.+++..++.++.++|..+|++||+.||++++++|+.|+ |.++..
T Consensus       256 ~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~  335 (467)
T PTZ00206        256 NRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPA  335 (467)
T ss_pred             hHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCch
Confidence            46889999999999 9999999999999999889999999999999999999999999999999999999999 455677


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhh
Q 039353           97 KVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFAL  176 (239)
Q Consensus        97 ~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liGa~~~  176 (239)
                      ..++++++.+.++.+||++.+|+++.+++.+..+ .++   .++++|...+..+.+++.++|+++|+++.+++++||+++
T Consensus       336 ~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~-~~~---~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~  411 (467)
T PTZ00206        336 IMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD-ARK---VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISG  411 (467)
T ss_pred             hhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC-ccc---CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHH
Confidence            8888999999999999999999999998876432 122   244567666777777889999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353          177 IPITFVFPSMVFIKV---KANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVI  227 (239)
Q Consensus       177 ~~l~fi~P~l~~l~~---~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si~~li  227 (239)
                      +.++|++|+++|++.   .+++.++++++.+++++++|++.++.|||+|+.+.+
T Consensus       412 ~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        412 GLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            999999999999984   233344556778999999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=5e-35  Score=266.83  Aligned_cols=215  Identities=12%  Similarity=0.166  Sum_probs=186.6

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc--cccccCccc
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS--VYLPEQMSC   92 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~--~~Il~n~~~   92 (239)
                      .++..++.++++++|+| ||+++|++++|||||+  +|+++...+...+...|+.+|+.||++|||+++  ++.+.|+|+
T Consensus       230 ~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~--~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~  307 (473)
T PLN03074        230 TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ--KFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPR  307 (473)
T ss_pred             hhHHHHHHHHHHHHHHhcccccHHHHHHhccChh--cccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCC
Confidence            46677888889999999 9999999999999998  588888899999999999999999999999876  456778985


Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHh
Q 039353           93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIG  172 (239)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liG  172 (239)
                      +.+ ..++++++.++++.+||++.+|+.+.+|+....+ +    .+....|+.+|..+++.++++|+.+|+|++++||+|
T Consensus       308 ~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~-~----~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvG  381 (473)
T PLN03074        308 SGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH-D----TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVG  381 (473)
T ss_pred             chH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc-c----cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            444 6888999999999999999999999999976532 1    245678999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHhcCC-------------chhH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccccc
Q 039353          173 SFALIPITFVFPSMVFIKVKANT-------------ARVK--KKAWHWFNILL-FSLVTVATTVAAVRFVIKDIHHYSFF  236 (239)
Q Consensus       173 a~~~~~l~fi~P~l~~l~~~~~~-------------~~~~--~~~~~~~~ii~-G~~~~v~gt~~si~~li~~~~~~~~f  236 (239)
                      |++++.++|++|+++|++.++++             .++|  ..+.|++++++ |+++.+.|||+|++++++++++|++|
T Consensus       382 s~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f  461 (473)
T PLN03074        382 ALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLF  461 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhh
Confidence            99999999999999999976543             1223  23789999975 55557899999999999999999999


Q ss_pred             cC
Q 039353          237 TD  238 (239)
Q Consensus       237 ~~  238 (239)
                      +|
T Consensus       462 ~~  463 (473)
T PLN03074        462 AK  463 (473)
T ss_pred             hh
Confidence            86

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.4e-34  Score=259.55  Aligned_cols=220  Identities=25%  Similarity=0.530  Sum_probs=195.0

Q ss_pred             CCCccccccCCchhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039353            3 NKHRNYELKGSKTDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST   81 (239)
Q Consensus         3 ~~~~~y~~~~~~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~   81 (239)
                      +|..+|....+.+..    ++++|+++|+| ||+++||||++||+|++  |+|++..++.+++.+|+..++.||++|||+
T Consensus       216 ~~~~~~~~~~~~~~~----f~a~g~iaFaf~gH~v~peIq~tMk~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~  289 (437)
T KOG1303|consen  216 APSGGYLDLGTIPTV----FTALGIIAFAYGGHAVLPEIQHTMKSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDS  289 (437)
T ss_pred             CcccCcccCCCCcch----hhhhhheeeeecCCeeeeehHhhcCCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence            344555554432222    89999999999 99999999999999995  999999999999999999999999999999


Q ss_pred             cccccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHc
Q 039353           82 ASVYLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAF  161 (239)
Q Consensus        82 v~~~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v  161 (239)
                      ++++++.|+.++.|+...+++++.+|++.+++++.+|..+.+|+....++. ++.++..++|.+.|..+++.+.++|+.+
T Consensus       290 ~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~-~~~~~~~~~R~~~Rt~~v~~~~~vA~~~  368 (437)
T KOG1303|consen  290 VPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHP-DFKKRSLVLRLLVRTFFVAVTTFVALSF  368 (437)
T ss_pred             cchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCc-cccccccceeeehhhHHHHHHHHHHHhc
Confidence            999999999767899999999999999999999999999999999886422 2322456799999999999999999999


Q ss_pred             cchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 039353          162 PFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFN-ILLFSLVTVATTVAAVRFVIKD  229 (239)
Q Consensus       162 P~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~-ii~G~~~~v~gt~~si~~li~~  229 (239)
                      |+|+++++++||+...++++++||++|++.+|.++...+|+.++.+ +++|+++++.+...++++++.+
T Consensus       369 PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  369 PFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             cccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999998887777788888888 7999999999999999988753

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.97  E-value=4.5e-34  Score=256.31  Aligned_cols=209  Identities=18%  Similarity=0.318  Sum_probs=185.7

Q ss_pred             hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchh-hcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCccc
Q 039353           15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVV-KNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSC   92 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~-~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~   92 (239)
                      ..++++++.++|+++||| ||+++|++++|||+|++ ++++++...++.+++++|+.+|..||++||+++++++++|+++
T Consensus       188 ~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~  267 (409)
T PF01490_consen  188 FISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPN  267 (409)
T ss_pred             cchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCC
Confidence            356789999999999999 99999999999999997 5677999999999999999999999999999999999999997


Q ss_pred             ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-----ccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHH
Q 039353           93 VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-----EESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDF  167 (239)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-----~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v  167 (239)
                      +++...++++++.++++.+||++.+|.++.+|+.+.++     +..+.+...+++|+.+|..+++.+.++|+.+|+++++
T Consensus       268 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i  347 (409)
T PF01490_consen  268 DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDI  347 (409)
T ss_pred             cccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhh
Confidence            77789999999999999999999999999999988642     0111113456789999999999999999999999999


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 039353          168 VNLIGSFALIPITFVFPSMVFIKVKANTARVKKK-----AWHWFNILLFSLVTVATTVAAV  223 (239)
Q Consensus       168 ~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~-----~~~~~~ii~G~~~~v~gt~~si  223 (239)
                      ++++||+++..++|++|+++|++.+++++.+.++     ..++.++++|++.++.|||.++
T Consensus       348 ~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  348 ISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            9999999999999999999999999876543333     4477889999999999999886

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.96  E-value=7.2e-29  Score=221.60  Aligned_cols=210  Identities=15%  Similarity=0.274  Sum_probs=187.5

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChH
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKW   95 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~   95 (239)
                      .+++.+.++|+++||| ||.+..++++|||||+++++.++...+...+.++|..+|..||++|||++++|++.++|..+-
T Consensus       192 ~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~  271 (411)
T KOG1305|consen  192 SFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILN  271 (411)
T ss_pred             hhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccc
Confidence            3478999999999999 999999999999999999999999999999999999999999999999999999999985322


Q ss_pred             ------HHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccchHHHHH
Q 039353           96 ------VKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVN  169 (239)
Q Consensus        96 ------~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~  169 (239)
                            .....+..+..+.+..+|+..+|++..+++.+.+....+ ++.++.++.+++..++.++.+.|+.+|+++++++
T Consensus       272 ~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~-~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~  350 (411)
T KOG1305|consen  272 NLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGL-TSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFG  350 (411)
T ss_pred             hhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCC-CCccceehhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence                  246889999999999999999999999888766532211 1356778899999999999999999999999999


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039353          170 LIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKD  229 (239)
Q Consensus       170 liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si~~li~~  229 (239)
                      ++||+++..++||+|+++|++..|+  +++++...+...++|+...++|+...+.++..+
T Consensus       351 ~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  351 FVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999987  556778889999999999999999998888764

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=5e-30  Score=217.89  Aligned_cols=214  Identities=15%  Similarity=0.277  Sum_probs=190.5

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccChH
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVKW   95 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~~   95 (239)
                      +..+++.++|+++|+| .|...|+++.+|+||++  |...+.|+-+..+++-..+|.+||++||+.+++.|.+|+|+ .-
T Consensus       300 di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~--Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qs  376 (524)
T KOG4303|consen  300 DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ--FNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QS  376 (524)
T ss_pred             EcccCceEEEEEEEeeeceeeccccccccCChhH--heeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cc
Confidence            4456788999999999 99999999999999994  88889999999999999999999999999999999999995 34


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc-cccCCCc----ch--hhHHHHHHHHHHHHHHHHHHHHccchHHHH
Q 039353           96 VKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK-LEESTFS----RE--NIKRRFFLRGFLFAFNIFVAAAFPFIGDFV  168 (239)
Q Consensus        96 ~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~-~~~~~~~----~~--~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~  168 (239)
                      +..++++.+.+..++|||+-.+.+.+.+|+-++. .+...|+    ..  -+-+...+|+.+++++.++|+.+|+|..++
T Consensus       377 fk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LM  456 (524)
T KOG4303|consen  377 FKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELM  456 (524)
T ss_pred             hhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHH
Confidence            7888899999999999999999999999997664 3334442    12  233445679999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 039353          169 NLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAVRFVIKDIHHY  233 (239)
Q Consensus       169 ~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si~~li~~~~~~  233 (239)
                      +++|++.++.++|+.|++||+++.++.....++..+..++++|...++.|.|.|.+++++.++.-
T Consensus       457 Gl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~  521 (524)
T KOG4303|consen  457 GLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSA  521 (524)
T ss_pred             HhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhcc
Confidence            99999999999999999999999988777778899999999999999999999999999988753

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.64  E-value=1.3e-14  Score=130.89  Aligned_cols=206  Identities=17%  Similarity=0.123  Sum_probs=149.4

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCcccCh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQMSCVK   94 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~~~~~   94 (239)
                      ..+..+..++|++.||| +|+++|++++||++++++..+|+...+..+..++|...+..+|..+|+.+.++++++.++.+
T Consensus       190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~  269 (415)
T COG0814         190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI  269 (415)
T ss_pred             hhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence            45667889999999999 99999999999999997669999999999999999999999999999999999999998654


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhcHHHH--------------HHhhccccccCCCcchhhHHHH--HHHHHHHHHHHHHH
Q 039353           95 WVKVFINSSVFLQSMVCQHVFISPIHET--------------LDTKFLKLEESTFSRENIKRRF--FLRGFLFAFNIFVA  158 (239)
Q Consensus        95 ~~~~~~~~~~~~~~~~s~pl~~~p~~~~--------------l~~~~~~~~~~~~~~~~~~~r~--~~r~~~~~~~~~iA  158 (239)
                      . ....+.........+++.+.++.+..              +++.++. ++.+..++..+.+.  .............+
T Consensus       270 ~-~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~  347 (415)
T COG0814         270 S-LLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK-SNSKPGRKKTGLLTFLPPLIFALLYPWGFA  347 (415)
T ss_pred             H-HHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh-ccCcccchhhhhhhHHHHHHHHHHHHHHHH
Confidence            3 33333444444446666666555433              2332221 01111012222222  23445555566788


Q ss_pred             HHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039353          159 AAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTVAAV  223 (239)
Q Consensus       159 ~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~~si  223 (239)
                      ...|..+.+++.+|+..+..+.++.|...+.+....+..+.++....+++++|+..+....+.+.
T Consensus       348 ~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~  412 (415)
T COG0814         348 IALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF  412 (415)
T ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999998877755433322225678888999888887766543

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.13  E-value=1.5e-09  Score=96.95  Aligned_cols=168  Identities=12%  Similarity=0.069  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc-------cc---
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS-------VY---   85 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~-------~~---   85 (239)
                      ...++..+++...++| .|++++.+.+|++++ +|+.+|++..+..++.++|+..........+.+.-       ++   
T Consensus       176 ~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~  254 (381)
T TIGR00837       176 YWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDG  254 (381)
T ss_pred             cHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHH
Confidence            4556788899999999 788899999999877 45899999999999999999887666655543211       11   


Q ss_pred             ---cccC-cccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHc
Q 039353           86 ---LPEQ-MSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAF  161 (239)
Q Consensus        86 ---Il~n-~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v  161 (239)
                         ...+ .+ +.|...+....-.+.+..|+.-......|.+.+.+++.++ +      .+|.....+..+...++|...
T Consensus       255 l~~~~~~~~~-~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~-~------~~~~~~~~~~~~~pl~~a~~~  326 (381)
T TIGR00837       255 LVNALQGVLK-SSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS-K------KGRFKTGLLTFLPPLVFALFY  326 (381)
T ss_pred             HHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-c------CCCchhhhhhHHhHHHHHHHh
Confidence               1112 22 3345667777778888888888878888888877765321 1      124555667778888999999


Q ss_pred             cchH-HHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353          162 PFIG-DFVNLIGSFALIPITFVFPSMVFIKVKAN  194 (239)
Q Consensus       162 P~~~-~v~~liGa~~~~~l~fi~P~l~~l~~~~~  194 (239)
                      |+.. ..++..| +.++.+.+++|++++++.||+
T Consensus       327 p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       327 PEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            9876 8999999 889999999999999998875

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.00  E-value=5.2e-08  Score=87.61  Aligned_cols=191  Identities=16%  Similarity=0.166  Sum_probs=132.1

Q ss_pred             hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhh--hhhhh---------cccccc
Q 039353           15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIP--IVGYW---------AYGSTA   82 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g--~~gYl---------~fG~~v   82 (239)
                      ..++...+.++|+..+|| -|+++|++.+.+++.. |+.+|++..+..+..++|+..-  +.|-+         .-|+++
T Consensus       180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~-~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~  258 (394)
T PF03222_consen  180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP-KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV  258 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence            356777889999999999 7999999999998553 3688898888888888887653  33311         112121


Q ss_pred             cc--ccccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 039353           83 SV--YLPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAA  160 (239)
Q Consensus        83 ~~--~Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~  160 (239)
                      ++  ..+.+..++.+......+.-.+++.+||-=...-.+|.+++.++.+ ++      ...|.....+..+...++|..
T Consensus       259 ~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~-~~------~~~r~~~~~ltf~ppl~~a~~  331 (394)
T PF03222_consen  259 SALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK-NN------SSGRLKTWLLTFLPPLIFALL  331 (394)
T ss_pred             HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cc------ccchHHHHHHHHHhHHHHHHH
Confidence            11  2333333345566777788888888888766677888888877752 21      123444455566677888999


Q ss_pred             ccc-hHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchh-H----HHHHHHHHHHHHHHH
Q 039353          161 FPF-IGDFVNLIGSFALIPITFVFPSMVFIKVKANTARV-K----KKAWHWFNILLFSLV  214 (239)
Q Consensus       161 vP~-~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~-~----~~~~~~~~ii~G~~~  214 (239)
                      .|+ |...+++.| ...+.+..++|.++.++.|+++... +    .+.....++++|++.
T Consensus       332 ~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~i  390 (394)
T PF03222_consen  332 FPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILI  390 (394)
T ss_pred             CcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHH
Confidence            996 889999999 9999999999999999998754321 2    234444455555544

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.83  E-value=3.4e-07  Score=82.41  Aligned_cols=187  Identities=14%  Similarity=0.087  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-----cc-----ccccC
Q 039353           21 ALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-----SV-----YLPEQ   89 (239)
Q Consensus        21 ~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-----~~-----~Il~n   89 (239)
                      ...++|++.+|| -|+++|++.+.+++.. ++.+|++..+..+..++|+.-=......-+.+.     ++     +++..
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~~-~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~  261 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGNI-RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQA  261 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHH
Confidence            788999999999 7999999999987654 368899999999998888865544444333221     11     22332


Q ss_pred             cc---cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccc-hH
Q 039353           90 MS---CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPF-IG  165 (239)
Q Consensus        90 ~~---~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-~~  165 (239)
                      +.   +..+...+....-.+++.+||-=......|.+.+.++.+++.       ..|.....+..+...++|+..|+ |.
T Consensus       262 l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~-------~~r~~~~~l~flppli~a~~~P~~F~  334 (403)
T PRK15132        262 LREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTV-------GGRLQTGLITFLPPLAFALFYPRGFV  334 (403)
T ss_pred             HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc-------cCCchhehhhHHHHHHHHHHhHHHHH
Confidence            22   234556666676677778887666677788888877643211       12555566778888899999997 77


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHhcCC-chhH----HHHHHHHHHHHHHHHHH
Q 039353          166 DFVNLIGSFALIPITFVFPSMVFIKVKANT-ARVK----KKAWHWFNILLFSLVTV  216 (239)
Q Consensus       166 ~v~~liGa~~~~~l~fi~P~l~~l~~~~~~-~~~~----~~~~~~~~ii~G~~~~v  216 (239)
                      ..+++.|. ..+.+.+++|+++-++.++++ ..++    .+..+++.+++|++..+
T Consensus       335 ~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~  389 (403)
T PRK15132        335 MALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG  389 (403)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence            88898885 579999999999999998754 2222    35667777777776654

>PRK10483 tryptophan permease; Provisional

Probab=98.70  E-value=9.7e-07  Score=79.53  Aligned_cols=188  Identities=11%  Similarity=0.006  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc-----------cccccccc
Q 039353           19 FNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY-----------GSTASVYL   86 (239)
Q Consensus        19 ~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f-----------G~~v~~~I   86 (239)
                      .....++|++.+|| -|+++|++.+.+++..+ +.++++..+..+..++|+.-=......-           |++++ ..
T Consensus       192 ~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~-kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L  269 (414)
T PRK10483        192 PYLLMTLPFCLASFGYHGNVPSLMKYYGKDPK-TIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VL  269 (414)
T ss_pred             HHHHHHHHHHHhhccCCCcchHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HH
Confidence            34778999999999 79999999999876544 7889999999999999987332222222           22221 11


Q ss_pred             ccCcc---cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccc
Q 039353           87 PEQMS---CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPF  163 (239)
Q Consensus        87 l~n~~---~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~  163 (239)
                      +..+.   ++.+...+..+...+++..||-=......|.+.+.++.+++.    +   .|...-.+..+-..++|...|+
T Consensus       270 ~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~~----~---~r~~~~~ltflPPl~~al~~P~  342 (414)
T PRK10483        270 VQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSA----M---GRFKTALLTFLPPVVGGLLFPN  342 (414)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----c---cceeeehhhHhhHHHHHHHhHH
Confidence            12221   233455666677777788888666677788888887753221    1   2444455677888899999997


Q ss_pred             -hHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC-CchhHH----HHHHHHHHHHHHHHHH
Q 039353          164 -IGDFVNLIGSFALIPITFVFPSMVFIKVKAN-TARVKK----KAWHWFNILLFSLVTV  216 (239)
Q Consensus       164 -~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~-~~~~~~----~~~~~~~ii~G~~~~v  216 (239)
                       |=.-++..|.. ++.+.-++|.++-++.||+ +...++    +....+.+++|+...+
T Consensus       343 ~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~~~~g~~~i~  400 (414)
T PRK10483        343 GFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLILLFGVGNAL  400 (414)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHHHHHHHHHHH
Confidence             88899999965 7888899999999999975 322221    2333455555555443

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.53  E-value=8.3e-06  Score=73.53  Aligned_cols=187  Identities=12%  Similarity=0.035  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHH--hhhhhhh---------hccccccccccc
Q 039353           20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYY--GIPIVGY---------WAYGSTASVYLP   87 (239)
Q Consensus        20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~--~~g~~gY---------l~fG~~v~~~Il   87 (239)
                      ....++|++.+|| -|+++|++.+.+++..+ +.+|.+..+..+..++|+  ...+.|-         ..-|+++++.+.
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~-~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~  272 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKRKD-KLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVK  272 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHH
Confidence            4677999999999 79999999999875543 466677766666666774  2223331         122333332111


Q ss_pred             ---cCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccc-
Q 039353           88 ---EQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPF-  163 (239)
Q Consensus        88 ---~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~-  163 (239)
                         .+. +..+...+.++...+++..||-=......|.+.+.++.++++       ..|...-.+..+-..+.|...|+ 
T Consensus       273 s~~~~~-~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~~-------~~r~~~~~ltflPPl~~al~~P~g  344 (415)
T PRK09664        273 SFLGTK-QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSH-------GGRFKTVLLTFLPPALLYLIFPNG  344 (415)
T ss_pred             HHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc-------ccceeeehhhHhhhHHHHHHhhHH
Confidence               122 234666677777777888888766677788888887754221       12444455667788899999997 


Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC-CchhH----HHHHHHHHHHHHHHHHH
Q 039353          164 IGDFVNLIGSFALIPITFVFPSMVFIKVKAN-TARVK----KKAWHWFNILLFSLVTV  216 (239)
Q Consensus       164 ~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~-~~~~~----~~~~~~~~ii~G~~~~v  216 (239)
                      |=.-++..|.. ++.+.-++|+++-++.||+ ....+    .+..-.+.+++|++..+
T Consensus       345 Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~  401 (415)
T PRK09664        345 FIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVIL  401 (415)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHH
Confidence            88899999985 7789999999999999975 22222    23455556666665544

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.50  E-value=1.2e-05  Score=72.92  Aligned_cols=198  Identities=10%  Similarity=0.012  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHh-cccchHHHHhh----cc---Cch--hhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-----cc
Q 039353           20 NALGAISAAVVAN-APCLLPEMQST----LR---QPV--VKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-----SV   84 (239)
Q Consensus        20 ~~~~~~~~~~faf-~~~~~~~i~~~----m~---~p~--~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-----~~   84 (239)
                      ....++|++.+|| -|+.+|++...    .+   +++  .||.++++..+..+..++|+..-...-+.-+.+.     ++
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            4678899999999 68999998887    43   223  5678899999999999998877766666655422     12


Q ss_pred             --cccc----Cccc---C-----hHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc----cccCCCcchhhHHHHHH
Q 039353           85 --YLPE----QMSC---V-----KWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK----LEESTFSRENIKRRFFL  146 (239)
Q Consensus        85 --~Il~----n~~~---~-----~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~----~~~~~~~~~~~~~r~~~  146 (239)
                        +++.    .+++   .     .+...+..+.-.+++..||-=.....+|.++....+    .++++  ...+..+...
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~--~~~~~~~~~~  367 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTK--VSLGKLNTIS  367 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--cCHHHHHHHH
Confidence              2222    2232   1     234455555566677777765556777777776631    12222  2445566677


Q ss_pred             HHHHHHHHHHHHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 039353          147 RGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKKKAWHWFNILLFSLVTVATTV  220 (239)
Q Consensus       147 r~~~~~~~~~iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~~~~~~~~ii~G~~~~v~gt~  220 (239)
                      .+++.+.++.+|+.=|++=+++.-+|+-..+.+.|++|...-.|.-.-++.+ .+..|+++++.|++....-.|
T Consensus       368 ~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i~~~~~  440 (443)
T PRK13629        368 MIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTILNIVY  440 (443)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHHHHHHH
Confidence            7788899999999999999999988888889999999998876654322211 124578888888877554333

>TIGR00814 stp serine transporter

Probab=98.47  E-value=2.8e-06  Score=76.55  Aligned_cols=191  Identities=11%  Similarity=0.039  Sum_probs=129.2

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHH----hhccCch--hhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-----cc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQ----STLRQPV--VKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-----SV   84 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~----~~m~~p~--~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-----~~   84 (239)
                      .+.+...+++...+|| +|+++|++.    +|.+||+  .||.+|++..+..+..++|+..-...-+..+.+.     ++
T Consensus       184 ~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~  263 (397)
T TIGR00814       184 FLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQ  263 (397)
T ss_pred             hHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHc
Confidence            3566889999999999 999999987    3344333  5578889999999999888877766666665432     12


Q ss_pred             c--ccc----CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcc-c--cccCCCcchhhHHHHHHHHHHHHHHH
Q 039353           85 Y--LPE----QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFL-K--LEESTFSRENIKRRFFLRGFLFAFNI  155 (239)
Q Consensus        85 ~--Il~----n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~-~--~~~~~~~~~~~~~r~~~r~~~~~~~~  155 (239)
                      +  ++.    ..+ ..+...+..+.-.+++..|+-=....++|.+++.+. .  .++++  .+.+........++.+.++
T Consensus       264 nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~w  340 (397)
T TIGR00814       264 NISILSYLANHFN-AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKK--INIRKLNRAIAIFIVLTTW  340 (397)
T ss_pred             CcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccc--cCHHHHHHHHHHHHHHHHH
Confidence            2  122    122 234455555666667777777666777888888762 1  11111  2344455666778889999


Q ss_pred             HHHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHH
Q 039353          156 FVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARVKK-KAWHWFNILLFS  212 (239)
Q Consensus       156 ~iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~~~-~~~~~~~ii~G~  212 (239)
                      .+|+.=|++=+++.-+|+-..+.+.|++|...-.|.-.-+  ++| ++.++++++.|+
T Consensus       341 ~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~--~~~~~~~~~fv~~~g~  396 (397)
T TIGR00814       341 IVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALK--KYRGRISNVFVTVIGL  396 (397)
T ss_pred             HHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHH--HhCCCcchheeEeeec
Confidence            9999999999999977778889999999998776654322  222 134666665554

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK11021 putative transporter; Provisional

Probab=98.26  E-value=0.00032  Score=63.36  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV   73 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~   73 (239)
                      .++.++..++....|+| |.......-+|+|||+| +.+|.+..+...+.++|++....
T Consensus       174 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k-~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        174 IEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPER-DFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             ccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999 99999999999999986 89999999999999999987654

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.18  E-value=0.00033  Score=63.96  Aligned_cols=61  Identities=7%  Similarity=-0.077  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY   78 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f   78 (239)
                      ++..+..++....|+| |-......-+|+|||+| +.+|++..+..++.++|++....-...-
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iPrai~~s~~i~~v~Y~l~~~~~~~~~  250 (445)
T PRK10644        189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSSTAIMGMI  250 (445)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            4556667788899999 99999999999999986 7999999999999999998876644333

>PRK10746 putative transport protein YifK; Provisional

Probab=98.15  E-value=0.00063  Score=62.56  Aligned_cols=174  Identities=11%  Similarity=0.029  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-c---cccc---
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-S---VYLP---   87 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-~---~~Il---   87 (239)
                      +++.++..++....|+| |-........|+|||+| +.+|++..++....++|+......-...+.+. +   ++..   
T Consensus       197 ~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~  275 (461)
T PRK10746        197 GGWKGFLTALCIVVASYQGVELIGITAGEAKNPQV-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTF  275 (461)
T ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHH
Confidence            45677889999999999 99999999999999986 89999988888888888876444333333221 1   1111   


Q ss_pred             cCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-------ccCCCcchhhHHHHH-HHHHHHHHHHHHHH
Q 039353           88 EQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-------EESTFSRENIKRRFF-LRGFLFAFNIFVAA  159 (239)
Q Consensus        88 ~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~r~~-~r~~~~~~~~~iA~  159 (239)
                      .+... .....+.+....+..+.+.--.....-+.+...-+++       +.++   ++.+.+-+ +.....++...+..
T Consensus       276 ~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~~---~g~P~~al~~~~~~~~l~~~~~~  351 (461)
T PRK10746        276 AKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSR---HGVPVAGVAVSILILLVGSCLNY  351 (461)
T ss_pred             HHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhCC---CCCcHHHHHHHHHHHHHHHHHHH
Confidence            11111 1122333444444444433323333333333332210       1111   12222222 22222222333444


Q ss_pred             HccchHHHHHHHhhhhh--hHHHHHHHHHHHHHHhcC
Q 039353          160 AFPFIGDFVNLIGSFAL--IPITFVFPSMVFIKVKAN  194 (239)
Q Consensus       160 ~vP~~~~v~~liGa~~~--~~l~fi~P~l~~l~~~~~  194 (239)
                      ..|+-+.+++.+-+.++  ..+.++++++.+++++|+
T Consensus       352 ~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~  388 (461)
T PRK10746        352 IIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA  388 (461)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56666666665543333  478999999999999874

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.10  E-value=0.00027  Score=65.10  Aligned_cols=52  Identities=8%  Similarity=-0.038  Sum_probs=42.8

Q ss_pred             HHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353           27 AAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG   79 (239)
Q Consensus        27 ~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG   79 (239)
                      ...|+| |-.......+|+|||+| +.+|++..+...+.++|+.....-...-+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDK-NYPIAILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            457899 99999989999999986 89999999999999999876655444444

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.08  E-value=0.00037  Score=63.79  Aligned_cols=172  Identities=10%  Similarity=0.067  Sum_probs=96.7

Q ss_pred             hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-cc-------c
Q 039353           15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-SV-------Y   85 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-~~-------~   85 (239)
                      ++.+.++..++....|+| |-........|+|||+| +.+|++..+...+.++|+.....--..-..+. +.       .
T Consensus       177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r-~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~  255 (446)
T PRK10197        177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEK-HIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRS  255 (446)
T ss_pred             cccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHH
Confidence            345668899999999999 99999999999999986 79999988999899999886554332222211 10       1


Q ss_pred             cccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-------ccCCCcchhhHHHHHHHH-HHHHHHHHH
Q 039353           86 LPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-------EESTFSRENIKRRFFLRG-FLFAFNIFV  157 (239)
Q Consensus        86 Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~r~~~r~-~~~~~~~~i  157 (239)
                      ..++... .+...+.++...+..+.+..-.....-+.+...-++.       +.++   ++.+.+-++-. ++.++..+.
T Consensus       256 ~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~---~~~P~~Ail~~~~~~~l~~l~  331 (446)
T PRK10197        256 VLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR---SKTPYVAVLLSTGAAFLTVVV  331 (446)
T ss_pred             HHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc---CCCcHHHHHHHHHHHHHHHHH
Confidence            1222221 2334444444444444444333333333333322210       1111   12223322222 222222222


Q ss_pred             HHHcc--chHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353          158 AAAFP--FIGDFVNLIGSFALIPITFVFPSMVFIKVKA  193 (239)
Q Consensus       158 A~~vP--~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~  193 (239)
                      ....|  .++.++++.+...  .+.|.++++.+++++|
T Consensus       332 ~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~  367 (446)
T PRK10197        332 NYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK  367 (446)
T ss_pred             HhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            22223  3667777666444  3888999999888876

>PRK10655 potE putrescine transporter; Provisional

Probab=98.08  E-value=0.00068  Score=61.73  Aligned_cols=58  Identities=12%  Similarity=-0.102  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039353           18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYW   76 (239)
Q Consensus        18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl   76 (239)
                      +.++..++....|+| |-......-+|+|||+| +.+|++..+...+.++|++.......
T Consensus       188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~Y~l~~~~~~~  246 (438)
T PRK10655        188 FSAVGSSIAMTLWAFLGLESACANSDAVENPER-NVPIAVLGGTLGAAVIYIVSTNVIAG  246 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456777788899999 99999999999999986 89999999999999999987654443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.05  E-value=0.00054  Score=63.08  Aligned_cols=62  Identities=15%  Similarity=0.067  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG   79 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG   79 (239)
                      +..++..++....|+| |-......-+|+|||+| +.++++..+...+.++|+......-...+
T Consensus       204 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p  266 (471)
T PRK11387        204 GGLPILMTMVAVNFAFSGTELIGIAAGETENPAK-VIPVAIRTTIARLVIFFVGTVLVLAALIP  266 (471)
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            4556778888899999 99999999999999986 79999999999889999887654433333

>PRK15049 L-asparagine permease; Provisional

Probab=97.93  E-value=0.0015  Score=60.64  Aligned_cols=172  Identities=13%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc-cc---ccc---
Q 039353           15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST-AS---VYL---   86 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~-v~---~~I---   86 (239)
                      ++.+..++.++....|+| |-......-.|+|||+| +.+|++..++....++|+..........+.+ .+   ++.   
T Consensus       216 p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~  294 (499)
T PRK15049        216 PHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTF  294 (499)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHH
Confidence            345566677778899999 99999999999999986 7999999888888888887665444443321 11   111   


Q ss_pred             ccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc-------ccCCCcchhhHHHHHH-HHHHHHHHHHHH
Q 039353           87 PEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL-------EESTFSRENIKRRFFL-RGFLFAFNIFVA  158 (239)
Q Consensus        87 l~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-------~~~~~~~~~~~~r~~~-r~~~~~~~~~iA  158 (239)
                      .+... ..+...+.++...+..+.+.--.....-+.+...-++.       +.++   ++.+.+-++ ..++.++..++.
T Consensus       295 ~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~k---~~~P~~Ail~~~~i~~l~~~l~  370 (499)
T PRK15049        295 FSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMSR---QHVPYAGILATLVVYVVGVFLN  370 (499)
T ss_pred             HHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHH
Confidence            11111 12233444444444444443222233333333322110       1111   122233222 222222222222


Q ss_pred             HHccc--hHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353          159 AAFPF--IGDFVNLIGSFALIPITFVFPSMVFIKVKA  193 (239)
Q Consensus       159 ~~vP~--~~~v~~liGa~~~~~l~fi~P~l~~l~~~~  193 (239)
                      ...|.  ++.++++.  ..+..+.|++|++.+++++|
T Consensus       371 ~~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~  405 (499)
T PRK15049        371 YLVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRK  405 (499)
T ss_pred             hcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            23332  44455543  35567899999999998875

>PRK10249 phenylalanine transporter; Provisional

Probab=97.92  E-value=0.0034  Score=57.69  Aligned_cols=58  Identities=19%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVG   74 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g   74 (239)
                      +++.++..++....|+| |-.......+|+|||+| +.+|++..+.....++|+.....-
T Consensus       206 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k-~iPrai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        206 TGWNGLILSLAVIMFSFGGLELIGITAAEARDPEK-SIPKAVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             CcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888999999999 99999999999999986 799999999998899997754433

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.91  E-value=0.00026  Score=64.63  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhh
Q 039353           18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVG   74 (239)
Q Consensus        18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~g   74 (239)
                      +.++..++....|+| |-.......+|+|||+| +.+|++..++.++.++|++.....
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r-~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPGK-TMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc-cchHHHHHHHHHHHHHHHHHHHHH
Confidence            566778889999999 99999999999999986 899999999999999998876543

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.89  E-value=0.0024  Score=58.56  Aligned_cols=54  Identities=15%  Similarity=0.105  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGI   70 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~   70 (239)
                      +.+.++..+++...|+| |-.......+|+|||+| +.+|++..+.....+.|+..
T Consensus       197 ~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r-~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        197 HGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQ-SIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHH
Confidence            44566778888899999 99999999999999986 79999887777777777654

>TIGR00909 2A0306 amino acid transporter

Probab=97.87  E-value=0.00025  Score=64.28  Aligned_cols=170  Identities=11%  Similarity=-0.004  Sum_probs=93.3

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc--cccc-----cc
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST--ASVY-----LP   87 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~--v~~~-----Il   87 (239)
                      .+..++..++....++| |........+|+|||+| +.+|++..+..+..++|+..........+.+  .+++     +.
T Consensus       192 ~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r-~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~  270 (429)
T TIGR00909       192 MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPER-DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVG  270 (429)
T ss_pred             CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHH
Confidence            34567788899999999 99999999999999975 7899999999999999998875544332211  0110     11


Q ss_pred             cCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--ccCCC---c-chhhHHHHHHHHHHHHHHHHHHHHc
Q 039353           88 EQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EESTF---S-RENIKRRFFLRGFLFAFNIFVAAAF  161 (239)
Q Consensus        88 ~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~~~~---~-~~~~~~r~~~r~~~~~~~~~iA~~v  161 (239)
                      .+.. .++...+..+...+..+.+.--.....-+.+...-+++  | +.+   + +.+.+.+-..-..  +++. +....
T Consensus       271 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP-~~~~~~~~~~~~P~~a~~~~~--~i~~-~~~~~  345 (429)
T TIGR00909       271 YDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP-GSLSKVHPKTGTPHMSIIIFS--LTAA-LLASL  345 (429)
T ss_pred             HHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-HHHHHcCCCCCCcHHHHHHHH--HHHH-HHHHH
Confidence            1111 23444445555555555554433333333333322210  0 000   0 0122222111111  1111 11234


Q ss_pred             cchHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353          162 PFIGDFVNLIGSFALIPITFVFPSMVFIKVKA  193 (239)
Q Consensus       162 P~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~  193 (239)
                      .+++.+.++.+  .+..+.|++.++..+++++
T Consensus       346 ~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~  375 (429)
T TIGR00909       346 VPLEGLAELTS--IGTLIAFAAVNVAVIILRR  375 (429)
T ss_pred             cCHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            56777776543  3345777777777777654

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.87  E-value=0.0018  Score=59.53  Aligned_cols=169  Identities=11%  Similarity=0.056  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc----ccc----ccc
Q 039353           18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA----SVY----LPE   88 (239)
Q Consensus        18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v----~~~----Il~   88 (239)
                      +.++..++....|+| |......+.+|.||+  |+.+|.+..+...+..+|.......+...+++.    +++    +.+
T Consensus       194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~--k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~  271 (468)
T TIGR03810       194 MTQVKNMMLVTVWVFIGIEGASMLSARAEKR--SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE  271 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHhhhHhhccCc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH
Confidence            445667888999999 988888888899883  489999999999999999998877665544211    111    111


Q ss_pred             CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccc----c---ccCCCcchhhHHHHHHHHHHHHHHHHHHHHc
Q 039353           89 QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLK----L---EESTFSRENIKRRFFLRGFLFAFNIFVAAAF  161 (239)
Q Consensus        89 n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~----~---~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~v  161 (239)
                      +.- ..|...+..+...++.+.+.--.....-+.....-++    +   +.++   ++.+.+-+.-...+.....+....
T Consensus       272 ~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~~---~~tP~~al~~~~~i~~~~~l~~~~  347 (468)
T TIGR03810       272 HMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKENA---NGAPTNALWLTNGLIQIFLLTTLF  347 (468)
T ss_pred             HHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhCC---CCCCHHHHHHHHHHHHHHHHHHHc
Confidence            211 1333444455555555444433332222222222111    0   1111   122233222211111111111112


Q ss_pred             --cchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353          162 --PFIGDFVNLIGSFALIPITFVFPSMVFIKVKAN  194 (239)
Q Consensus       162 --P~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~  194 (239)
                        +.++.+.++.+  ....+.|.++++.+++++++
T Consensus       348 ~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~  380 (468)
T TIGR03810       348 SEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWR  380 (468)
T ss_pred             cHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence              34555666433  34568999999999988754

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.85  E-value=0.0032  Score=57.98  Aligned_cols=59  Identities=17%  Similarity=0.114  Sum_probs=48.2

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGY   75 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gY   75 (239)
                      +.+.++..++....|+| |-......-+|+|||+| +.+|++..+.....+.|+.....-+
T Consensus       208 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        208 KGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEK-SLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             ccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            45667889999999999 99999999999999986 7999987777777777876654443

>TIGR00908 2A0305 ethanolamine permease

Probab=97.83  E-value=0.0032  Score=57.40  Aligned_cols=56  Identities=16%  Similarity=0.098  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPI   72 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~   72 (239)
                      ..+.++..++....|+| |.......-+|+|||+| +.+|++..+..++..+|+..-.
T Consensus       188 ~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r-~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       188 GAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR-DIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-ccCHHHHHHHHHHHHHHHHHHH
Confidence            34567788888899999 99999999999999986 7999999998888888876643

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.81  E-value=0.0033  Score=57.92  Aligned_cols=55  Identities=15%  Similarity=0.096  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353           18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV   73 (239)
Q Consensus        18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~   73 (239)
                      +.++..++....|+| |-.......+|+|||+| +.+|++..+...+.++|+.....
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r-~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRK-SIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            667888899999999 99999999999999986 79999999999999999986543

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.81  E-value=0.008  Score=54.78  Aligned_cols=63  Identities=10%  Similarity=-0.014  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG   79 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG   79 (239)
                      .++.++..++....|+| |-.......+|+|||+| +.+|++..+...+.++|+..........+
T Consensus       184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r-~iPrAi~~~~~iv~ilYil~~~~~~~~~p  247 (435)
T PRK10435        184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR-TVPLATMLGTGLAGIIYIAATQVISGMFP  247 (435)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35678889999999999 99999999999999976 79999999999999999988766554443

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.78  E-value=0.0068  Score=55.61  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV   73 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~   73 (239)
                      +++.++..++....|+| |........+|+|||+| +.++++..+.....++|......
T Consensus       196 ~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k-~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        196 NGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEK-SIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             cchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888899999999 99999999999999986 78998888877777778766433

>PRK10836 lysine transporter; Provisional

Probab=97.78  E-value=0.0033  Score=58.22  Aligned_cols=61  Identities=16%  Similarity=0.093  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY   78 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f   78 (239)
                      .+..+........|+| |-......-.|+|||+| +.+|++..++..+.++|+.....-....
T Consensus       203 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~v  264 (489)
T PRK10836        203 GFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAK-NIPRAVRQVFWRILLFYVFAILIISLII  264 (489)
T ss_pred             cHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence            3455555666677999 99999999999999986 8999999999999999998765444333

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.73  E-value=0.0044  Score=56.69  Aligned_cols=59  Identities=14%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhh
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGY   75 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gY   75 (239)
                      +++.++..++....|+| |........+|+|||+| +.+|++..+......+|+.......
T Consensus       198 ~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r-~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       198 NGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIK-SITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             ccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhh-HHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            45567889999999999 99999999999999986 7999988888888888887644433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.73  E-value=0.0079  Score=55.45  Aligned_cols=60  Identities=8%  Similarity=-0.036  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY   78 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f   78 (239)
                      .+..+..++....|+| |-.......+|+|| + |+.+|.+..+..++.++|+..........
T Consensus       197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~-r~iPrai~~~~~i~~~~Yil~~~~~~~~~  257 (473)
T TIGR00905       197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K-SDVGKATVLGTLGALVIYILITLLSLGVL  257 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            4566778888999999 99999999999999 4 48999999999999999998876544433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.65  E-value=0.0033  Score=56.81  Aligned_cols=168  Identities=13%  Similarity=0.132  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc---cccc-------c
Q 039353           20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS---VYLP-------E   88 (239)
Q Consensus        20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~---~~Il-------~   88 (239)
                      ..+.+++...|+| |........+|+||   |+.+|.+..+...+.++|......-....+++..   ++..       +
T Consensus       189 ~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T PF13520_consen  189 GFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLAS  265 (426)
T ss_dssp             HHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHH
T ss_pred             chhhHHHHHHhhcccccccccccccccc---hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhc
Confidence            4678889999999 99999999999887   3699999999999999999987666666554321   1211       1


Q ss_pred             CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--ccCCCc---chhhHHHHHHHHHHHHHHHHHHH-Hcc
Q 039353           89 QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EESTFS---RENIKRRFFLRGFLFAFNIFVAA-AFP  162 (239)
Q Consensus        89 n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~~~~~---~~~~~~r~~~r~~~~~~~~~iA~-~vP  162 (239)
                      ... ..+...+..++..+..+.+..-......+.+...-+++  | +.++   +++.+.+-..-...+.....+.. ..|
T Consensus       266 ~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP-~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~  343 (426)
T PF13520_consen  266 AVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP-KWFAKVNKFGTPYNAIILVAVISSILLLLFLFIP  343 (426)
T ss_dssp             HHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-GGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             ccc-ccccccccccccccccccccchhhcchhhcccccccccchh-hhhhhccccCCceeeehhhhHHHHHHHHHHHhhh
Confidence            111 12344444455555555555444444444444433221  1 1111   11222332222222221111112 234


Q ss_pred             --chHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353          163 --FIGDFVNLIGSFALIPITFVFPSMVFIKVKAN  194 (239)
Q Consensus       163 --~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~  194 (239)
                        +++.+.++  +.....+.++++.+.+++.+++
T Consensus       344 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~  375 (426)
T PF13520_consen  344 QSSFDILVSL--SSVGYLISYILVILAVLFLRRK  375 (426)
T ss_dssp             SSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence              45555553  3344567777777777776654

...

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.64  E-value=0.0061  Score=56.23  Aligned_cols=59  Identities=15%  Similarity=0.167  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353           20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG   79 (239)
Q Consensus        20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG   79 (239)
                      ....++....|+| |-......-+|+|||+| +.+|++..+..++.+++....+.-+...+
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4555566678999 99999999999999976 79999998888776655444433333334

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.58  E-value=0.0017  Score=61.15  Aligned_cols=171  Identities=7%  Similarity=-0.012  Sum_probs=95.0

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc---ccccc---cc
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST---ASVYL---PE   88 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~---v~~~I---l~   88 (239)
                      .++.+++.+.....|+| |-........|+|||+| +.++.+..++.++.++|.+....-...-+.+   .++.+   ..
T Consensus       228 ~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~  306 (557)
T TIGR00906       228 YGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFE  306 (557)
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHH
Confidence            45667888999999999 99999999999999986 7999999999999999998765543333221   11111   11


Q ss_pred             CcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--cc--CCCcch-hhHHHHHHHHHHHHHHHHHHHHccc
Q 039353           89 QMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EE--STFSRE-NIKRRFFLRGFLFAFNIFVAAAFPF  163 (239)
Q Consensus        89 n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~--~~~~~~-~~~~r~~~r~~~~~~~~~iA~~vP~  163 (239)
                      ... .+|...+..+........+..-.....-+.+...-++.  |+  ++.+++ +.+.+-.+  +..+++.+++.. .+
T Consensus       307 ~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail--~~~iv~~il~~~-~~  382 (557)
T TIGR00906       307 YVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATV--VSGAIAALMAFL-FD  382 (557)
T ss_pred             HcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHH--HHHHHHHHHHHH-cC
Confidence            111 23444444444444443333323333333333322210  00  000001 12222221  112222333333 35


Q ss_pred             hHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353          164 IGDFVNLIGSFALIPITFVFPSMVFIKVKA  193 (239)
Q Consensus       164 ~~~v~~liGa~~~~~l~fi~P~l~~l~~~~  193 (239)
                      ++.+.++..  .+..+.|.++++..+.+++
T Consensus       383 ~~~l~~l~s--ig~ll~y~lv~~~~l~lR~  410 (557)
T TIGR00906       383 LKALVDLLS--IGTLLAYSLVAACVLILRY  410 (557)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence            666666542  3456889999888877774

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=97.55  E-value=0.031  Score=51.57  Aligned_cols=61  Identities=11%  Similarity=-0.111  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353           18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG   79 (239)
Q Consensus        18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG   79 (239)
                      ...+..+.....|+| |-.....+-+|+|||+| +.+|.+..+..+..++|..+-+......+
T Consensus       212 ~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNPRR-VAPRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHhcCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            344556666788999 99999999999999986 89999999998887766655544443334

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.51  E-value=0.0065  Score=55.63  Aligned_cols=173  Identities=10%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             hhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccCc----
Q 039353           16 DKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVYLPEQM----   90 (239)
Q Consensus        16 ~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~Il~n~----   90 (239)
                      .+..++..++-.-.||| |-...=.+-.|+|||.| .+++++..++.+++++|+.+-+..+-+-..   ++++.+-    
T Consensus       201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls~---~e~l~S~aVav  276 (479)
T KOG1287|consen  201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR-TLPRAILISIPLVTVIYVLVNVAYFTVLSP---DEILSSDAVAV  276 (479)
T ss_pred             CchHHHHHHHHHhhhcccCchhhccchHhhcCccc-cchHHHHHhhHHHHHHHHHhHhheeEecCH---HHhcccchHHH
Confidence            34556778888889999 88877778999999976 899999999999999999987665544322   2222221    


Q ss_pred             --c---cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCC----c---chhhHHHHHHHHHHHHHHHHHH
Q 039353           91 --S---CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTF----S---RENIKRRFFLRGFLFAFNIFVA  158 (239)
Q Consensus        91 --~---~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~----~---~~~~~~r~~~r~~~~~~~~~iA  158 (239)
                        .   -+++. .+.-++..++.+.+.--.++..-+.+...-++   ++.    +   .+....+.  .+........+.
T Consensus       277 ~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~are---G~LP~~~s~i~~~~~TP~~--allf~~~~~i~~  350 (479)
T KOG1287|consen  277 TFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGARE---GHLPAFFSMISVRRFTPRP--ALLFSGLLSIVL  350 (479)
T ss_pred             HHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc---cCccHHHHhhcCCCCCChH--HHHHHHHHHHHH
Confidence              1   01222 23333344444443322222221222221111   111    0   01100111  122233333444


Q ss_pred             HHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCCchh
Q 039353          159 AAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKANTARV  198 (239)
Q Consensus       159 ~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~~~~  198 (239)
                      ..+.|++.+++.++=.......+.+=+++++|.++++.++
T Consensus       351 ~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r  390 (479)
T KOG1287|consen  351 SLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR  390 (479)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            5666899999999988888889999999999998876443

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.45  E-value=0.01  Score=55.24  Aligned_cols=49  Identities=12%  Similarity=-0.048  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhh
Q 039353           22 LGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIP   71 (239)
Q Consensus        22 ~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g   71 (239)
                      ...+....|+| |-......-+|+|||+| +++|++..++..+.++|....
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP~r-~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENPGR-DYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCCcc-cccHHHHHHHHHHHHHHHHHH
Confidence            34445568899 99999999999999986 899999999888888887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.39  E-value=0.035  Score=51.48  Aligned_cols=53  Identities=15%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353           20 NALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV   73 (239)
Q Consensus        20 ~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~   73 (239)
                      ++..++....|+| |........+|+|||+| +.+|++..+...+..+|.+....
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~-~~p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEK-NFPKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence            4666777889999 99999999999999986 79999999999999999976443

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.34  E-value=0.025  Score=56.61  Aligned_cols=52  Identities=10%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhh
Q 039353           21 ALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIV   73 (239)
Q Consensus        21 ~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~   73 (239)
                      +...++++..|| |.....++-.|+|||+| ..++.+..++.++.++|+++.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~r-~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQK-AIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            667778888899 98888999999999986 79999999999999999998753

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.23  E-value=0.013  Score=54.35  Aligned_cols=61  Identities=11%  Similarity=0.083  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY   78 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f   78 (239)
                      +..++..++....|+| |-........|+|||+| +.+|++..+..++.++|++....-....
T Consensus       233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r-~iPrAi~~s~~~v~~~Y~l~~~a~~~~~  294 (501)
T TIGR00911       233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR-TLPIAIIISMPIVTFIYVLTNIAYFTVL  294 (501)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh-hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567788889999999 99999999999999976 7999999999999999999865443333

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.14  E-value=0.045  Score=49.78  Aligned_cols=62  Identities=16%  Similarity=0.145  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039353           18 VFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGS   80 (239)
Q Consensus        18 ~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~   80 (239)
                      ...+..++....++| |-....+..+|+|||+| +.+|.+..++..+..+|+.....-....++
T Consensus       200 ~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r-~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         200 FGGILAAILLAFFAFTGFEAIATLAEEVKNPKR-TIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            446788889999999 99999999999999976 689999999999999999988877777775

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=96.27  E-value=0.078  Score=48.24  Aligned_cols=176  Identities=12%  Similarity=0.142  Sum_probs=96.3

Q ss_pred             chhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHH-----hhhhhhhhccccccccc--
Q 039353           14 KTDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYY-----GIPIVGYWAYGSTASVY--   85 (239)
Q Consensus        14 ~~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~-----~~g~~gYl~fG~~v~~~--   85 (239)
                      -|+.+.+++.++-+.+||| |...+=.-..|-|||+| ..+|+++.-..=..++|.     +..+.-+-.++++.++-  
T Consensus       198 fP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~  276 (462)
T COG1113         198 FPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEK-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVT  276 (462)
T ss_pred             CCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhh-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHH
Confidence            4678899999999999999 99888888899999986 577766655554555554     45555555555533321  


Q ss_pred             cccCcccChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--c--cCCCcchh-hHHHHHHHHHHHHHHHHHHHH
Q 039353           86 LPEQMSCVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--E--ESTFSREN-IKRRFFLRGFLFAFNIFVAAA  160 (239)
Q Consensus        86 Il~n~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~--~~~~~~~~-~~~r~~~r~~~~~~~~~iA~~  160 (239)
                      +...++-+ +...+.|.-...+.+.+.---++..-+++..+-++.  |  -.+.++++ ...-+.+..+...+..++.+.
T Consensus       277 ~f~~iGi~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~  355 (462)
T COG1113         277 VFSLIGIP-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYI  355 (462)
T ss_pred             HHHHcCCc-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhh
Confidence            22222211 122222222222222222112233334444432211  0  00111122 223445677778888889999


Q ss_pred             ccchHHHHHHHhhhhhh--HHHHHHHHHHHHHHhc
Q 039353          161 FPFIGDFVNLIGSFALI--PITFVFPSMVFIKVKA  193 (239)
Q Consensus       161 vP~~~~v~~liGa~~~~--~l~fi~P~l~~l~~~~  193 (239)
                      .|  +.++.++-+.++.  .....+=.+.|+|++|
T Consensus       356 ~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         356 LP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99  4444444433333  3344455677888887

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.27  E-value=0.017  Score=53.20  Aligned_cols=63  Identities=13%  Similarity=-0.006  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGS   80 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~   80 (239)
                      ++.++..++....++| |.......-.|.|||+| ..+|.+..++....++|+......-...+.
T Consensus       198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k-~IPra~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPRK-TIPRATLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             chhHHHHhhhhhhcccccccccccccccCCCchh-hhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence            4788999999999999 99999999999999986 799999999999999999877665555554

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=94.98  E-value=1.1  Score=39.64  Aligned_cols=162  Identities=15%  Similarity=0.189  Sum_probs=91.8

Q ss_pred             hHHHHHHHH-HHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccccc-------cc
Q 039353           17 KVFNALGAI-SAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASVY-------LP   87 (239)
Q Consensus        17 ~~~~~~~~~-~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~~-------Il   87 (239)
                      +..+...+. ....++| |.........+++||+  +.+|....+..++..+|...-...-..+|.+.-++       ..
T Consensus       176 g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~--~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~  253 (359)
T TIGR00912       176 GLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK--KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELI  253 (359)
T ss_pred             CcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh--hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHH
Confidence            344444444 3778889 7777777888898876  58899999999999999998888888888543221       11


Q ss_pred             cCcccChHHHHH---HHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHHHccch
Q 039353           88 EQMSCVKWVKVF---INSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAAAFPFI  164 (239)
Q Consensus        88 ~n~~~~~~~~~~---~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~~vP~~  164 (239)
                      +..+-++.....   .-.........+..+..+-..+.+.+.++.+   ++      +....-.+.  +...++ ..|+-
T Consensus       254 ~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~--~~~~~~-~~~~~  321 (359)
T TIGR00912       254 KLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKR---KY------SILILPVLM--VIFSIS-FFPDS  321 (359)
T ss_pred             HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---Cc------chhHHHHHH--HHHHHH-Hccch
Confidence            222212222221   2223334445555566677778888877753   11      112111111  222222 34552


Q ss_pred             HHHHHHHh---hhhhhHHHHHHHHHHHHHHh
Q 039353          165 GDFVNLIG---SFALIPITFVFPSMVFIKVK  192 (239)
Q Consensus       165 ~~v~~liG---a~~~~~l~fi~P~l~~l~~~  192 (239)
                      ..-.....   ...+....+++|.++.+...
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~  352 (359)
T TIGR00912       322 SNQLFDYLEFLPIIAIVFFLLLPLILFIIVK  352 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22122222   13345677789998876654

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.49  E-value=0.3  Score=46.05  Aligned_cols=174  Identities=13%  Similarity=0.059  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcc-ccc--cccccccCc
Q 039353           15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAY-GST--ASVYLPEQM   90 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~f-G~~--v~~~Il~n~   90 (239)
                      +..+.++..++-+..|+| |-..+-..-.|-|||+| ..++++..++..+..+|+...+.-=+.- -++  ..++....-
T Consensus       228 p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~s  306 (554)
T KOG1286|consen  228 PFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALAS  306 (554)
T ss_pred             CCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCcccc
Confidence            345888899999999999 99999989999999986 8999999999999999998875433222 222  111111000


Q ss_pred             c------c--ChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc---cc-CCCcchhhHHHHHHHHHHHHHHHHHH
Q 039353           91 S------C--VKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL---EE-STFSRENIKRRFFLRGFLFAFNIFVA  158 (239)
Q Consensus        91 ~------~--~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~---~~-~~~~~~~~~~r~~~r~~~~~~~~~iA  158 (239)
                      |      .  -.....+.++...+.+..+---.+++.-+.+..+-+..   +- .+.++++.+  +....+..++..+.+
T Consensus       307 pF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P--~~a~~v~~~~~~l~~  384 (554)
T KOG1286|consen  307 PFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVP--LVAVLVSGLFGALAA  384 (554)
T ss_pred             HHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCc--hhHHHHHHHHHHHHH
Confidence            0      0  01111244444444444444334455545544442221   00 000011211  222223333333444


Q ss_pred             HHcc-----chHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353          159 AAFP-----FIGDFVNLIGSFALIPITFVFPSMVFIKVKA  193 (239)
Q Consensus       159 ~~vP-----~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~  193 (239)
                      ....     .++.++++.|-  +..+++.+=++.|++.|+
T Consensus       385 ~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~  422 (554)
T KOG1286|consen  385 LNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY  422 (554)
T ss_pred             HHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence            4332     26888887774  355666666777777665

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.31  E-value=1.2  Score=41.46  Aligned_cols=67  Identities=6%  Similarity=0.012  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccccc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTASV   84 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~~   84 (239)
                      +-|.+..++-.-+..+ |-..-.++.+|-||+++ +-++.+..+..+..++-.++-+.-.+.-+++.++
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~  317 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDA  317 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence            4556666677777777 77888999999999987 6888888888888887777766666677754433

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=92.42  E-value=6.4  Score=36.90  Aligned_cols=176  Identities=14%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhh-hhhhhccccc-----------
Q 039353           15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIP-IVGYWAYGST-----------   81 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g-~~gYl~fG~~-----------   81 (239)
                      ++++.++...+-+..|+| |..++---..|-+||+| ..+|++.-..-=..++|+..- ++|.+.=.++           
T Consensus       230 ~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K-~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~  308 (541)
T COG0833         230 AGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK-SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGV  308 (541)
T ss_pred             CcchHHHHHHHhhheeeeeceeeeeeeecccCCchh-hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCc
Confidence            567888999999999999 98887777899999976 688888777777777776443 2232222222           


Q ss_pred             cccccccCcccCh--HHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccccc----CCCcchhhHHHHHHHHHHHHHHH
Q 039353           82 ASVYLPEQMSCVK--WVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEE----STFSRENIKRRFFLRGFLFAFNI  155 (239)
Q Consensus        82 v~~~Il~n~~~~~--~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~----~~~~~~~~~~r~~~r~~~~~~~~  155 (239)
                      .+++-...+.+.+  ....+.|....++++.+--=.++..-+++..+-++...    ++.++++.+..-+..+.+..+..
T Consensus       309 ~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~la  388 (541)
T COG0833         309 AASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLA  388 (541)
T ss_pred             cCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHH
Confidence            1112111111100  12233343333333333222334444555554332100    01112344444444444444444


Q ss_pred             HHHHHccc---hHHHHHHHhhhhhhHHHHHHHHHHHHHHhc
Q 039353          156 FVAAAFPF---IGDFVNLIGSFALIPITFVFPSMVFIKVKA  193 (239)
Q Consensus       156 ~iA~~vP~---~~~v~~liGa~~~~~l~fi~P~l~~l~~~~  193 (239)
                      +++.....   ++-++++.|-.  ..++-+.=++.|++.||
T Consensus       389 fl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~  427 (541)
T COG0833         389 FLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR  427 (541)
T ss_pred             HHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            44443332   56677766633  34455555777888765

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=91.74  E-value=11  Score=34.75  Aligned_cols=159  Identities=13%  Similarity=0.065  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHHHHh-c-ccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhcccccc-ccccccCcccC
Q 039353           17 KVFNALGAISAAVVAN-A-PCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTA-SVYLPEQMSCV   93 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~-~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v-~~~Il~n~~~~   93 (239)
                      +..++..+++...-.+ . -.......+-+|+|+.++.-.....+......+-+..|...-.+=|+.. ..++...+.. 
T Consensus       191 ~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~-  269 (442)
T COG1457         191 SPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG-  269 (442)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc-
Confidence            3444455555444334 3 4566788888888873233345566666777778888888888888765 3333344431 


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhccccccCCCcchhhHHHHHHHHHHHHHHHHHHH----HccchHHHHH
Q 039353           94 KWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKLEESTFSRENIKRRFFLRGFLFAFNIFVAA----AFPFIGDFVN  169 (239)
Q Consensus        94 ~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~r~~~r~~~~~~~~~iA~----~vP~~~~v~~  169 (239)
                        +...+-+...++...+--.+.++..-.+.+...+        .++..|.+...+.  +..++|+    +..+++.++.
T Consensus       270 --~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~--------l~k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~  337 (442)
T COG1457         270 --FGLPAILILVLGTVTTNANNLYSAGLSFANIIPK--------LSKVTRVVIAGVG--IGTLLALAGPFFYNFFENFLL  337 (442)
T ss_pred             --HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhh--------hhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence              4555556667777777666777765555554432        1222333332222  3333344    3567888888


Q ss_pred             HHhhhhhhHHHHHHHHHHH
Q 039353          170 LIGSFALIPITFVFPSMVF  188 (239)
Q Consensus       170 liGa~~~~~l~fi~P~l~~  188 (239)
                      ++|+.........+--.+.
T Consensus       338 ~i~~~i~P~~~I~iad~~~  356 (442)
T COG1457         338 LLGYFIPPWGGVMIADYFI  356 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8887775555555544333

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=91.27  E-value=11  Score=33.98  Aligned_cols=42  Identities=10%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             cchHHHHh-hccCchhhcHHHHHHHHH---HHHHHHHHhhhhhhhhc
Q 039353           35 CLLPEMQS-TLRQPVVKNMRKALYVQF---TVGLLFYYGIPIVGYWA   77 (239)
Q Consensus        35 ~~~~~i~~-~m~~p~~~~~~~~~~~s~---~~~~~~y~~~g~~gYl~   77 (239)
                      .+.-.+.+ ++|||++ +.++.+..+.   .....+|...+.+|-..
T Consensus       198 iiv~~i~~~g~~~~~~-~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~  243 (378)
T TIGR00796       198 IVVNAIRSRGVTKPKK-ITKYTIKAGLIAAVLLAFIYLSLFYLGATS  243 (378)
T ss_pred             HHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            33344555 8999875 5666655555   34455566666666544

transmembrane helical spanners.

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=85.63  E-value=28  Score=31.75  Aligned_cols=57  Identities=11%  Similarity=0.195  Sum_probs=43.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhhhhHHHHHHHHHHHHHHhcC
Q 039353          138 ENIKRRFFLRGFLFAFNIFVAAAFPFIGDFVNLIGSFALIPITFVFPSMVFIKVKAN  194 (239)
Q Consensus       138 ~~~~~r~~~r~~~~~~~~~iA~~vP~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~  194 (239)
                      +.+.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+..+++..+...|+
T Consensus       322 ~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~  378 (416)
T COG1914         322 PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK  378 (416)
T ss_pred             chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence            356678888877666666665555599999999998888888888888877777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.53
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.12
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.09

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.53  E-value=5e-06  Score=73.96  Aligned_cols=175  Identities=5%  Similarity=-0.057  Sum_probs=96.5

Q ss_pred             hHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccccc----cccccCcc
Q 039353           17 KVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGSTAS----VYLPEQMS   91 (239)
Q Consensus        17 ~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~v~----~~Il~n~~   91 (239)
                      ++.++..++....|+| |........+|+|||+| +.+|.+..+...+.++|+..........+.+.-    ++..+-+.
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r-~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~  267 (445)
T 3l1l_A          189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR-NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAAR  267 (445)
T ss_dssp             ----HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHH
Confidence            3567888899999999 99999999999999975 799999999999999999988777666654321    11111010


Q ss_pred             --cChHHHHHHHHHHHHHHhhhhhhhhhcHHHHHHhhcccc--ccCCC---cchhhHHHHHHHHHHHHHHHHHHHHcc--
Q 039353           92 --CVKWVKVFINSSVFLQSMVCQHVFISPIHETLDTKFLKL--EESTF---SRENIKRRFFLRGFLFAFNIFVAAAFP--  162 (239)
Q Consensus        92 --~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~--~~~~~---~~~~~~~r~~~r~~~~~~~~~iA~~vP--  162 (239)
                        ...+...+..+...+..+.+.--.....-+.+...-+++  | +.+   ++++.+.+-++-...+.....+....|  
T Consensus       268 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP-~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~  346 (445)
T 3l1l_A          268 MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP-PIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNA  346 (445)
T ss_dssp             HHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSC-GGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-HHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence              012333444444445444443333233333332221110  0 011   011222232222221111111111223  


Q ss_pred             --chHHHHHHHhhhhhhHHHHHHHHHHHHHHhcCC
Q 039353          163 --FIGDFVNLIGSFALIPITFVFPSMVFIKVKANT  195 (239)
Q Consensus       163 --~~~~v~~liGa~~~~~l~fi~P~l~~l~~~~~~  195 (239)
                        .++.+.++.+  .+..+.|.++++.+++.++++
T Consensus       347 ~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          347 TKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             HCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence              3566666544  456789999999999998754

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.12  E-value=6.2e-05  Score=66.87  Aligned_cols=64  Identities=13%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039353           15 TDKVFNALGAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYG   79 (239)
Q Consensus        15 ~~~~~~~~~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG   79 (239)
                      +.++.+++.++....|+| |........+|+|||+| +.+|.+..+...+.++|+...+......+
T Consensus       184 ~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          184 PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKK-NVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCccc-chhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            456677888889999999 99999999999999975 79999999999999999988776555554

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.09  E-value=0.00012  Score=66.13  Aligned_cols=58  Identities=5%  Similarity=-0.071  Sum_probs=50.2

Q ss_pred             HHHHHHHHHh-cccchHHHHhhccCchhhcHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039353           23 GAISAAVVAN-APCLLPEMQSTLRQPVVKNMRKALYVQFTVGLLFYYGIPIVGYWAYGST   81 (239)
Q Consensus        23 ~~~~~~~faf-~~~~~~~i~~~m~~p~~~~~~~~~~~s~~~~~~~y~~~g~~gYl~fG~~   81 (239)
                      .++....|+| |........+|+|||+| +.+|++..++.++.++|+...+.-....+++
T Consensus       205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          205 VVFVAFILSYMGVEASATHVNEMSNPGR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTHHHHHHHHTTGGGGTGGGSSSSCCTT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccCccc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            4567789999 99999999999999986 7999999999999999999887777666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00