Citrus Sinensis ID: 039366

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------
MSLQVSASPTKIIQRNAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccc
ccEEEEcccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEcccccc
mslqvsasptkIIQRnaekdstrrsanfhpsiwgdrflsytsdsmekddgsaKHQELKEEIRRMLKInkpsqnnlDLIDAIQRLGVSYHFESEIDEILGKLHDahqdcglgdnendELYYISLQFRLLRQHGYKISADVFkrfkdsdgnfktsLAKDVRGMLSLFEathlgvheenILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEArhyipiyqeqsshnEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILgvyfepqySFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAekdlapqgklYRLHYAKKAMKNIVKNYFFEAKwchqnyiptmDEYMTVALVTsaypmlsttsfvgmgdivTKESFEWLfsnprfirASSVVCRLMDDmashefeqsrghvaSSVECymkqhgateEEACNEFRKQVSNAWKdinedclrptvlpmplLMRILNLTRVIDVIYKyedgythsAVVLKDFVASllinpvpi
mslqvsasptkiiqrnaekdstrrsanfhpsiwgdrFLSYTSDSMEKDDGSAKHQELKEEIRRMLkinkpsqnnlDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVfkrfkdsdgnfKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHqkelgdisrDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI
MSLQVSASPTKIIQRNAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI
*******************************IWGDRFL***********************************NLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMA*************SVECYMKQHG****EACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLIN****
***************************FHPSIWGDRFLSYTSDS****D*SAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEF*Q**GHVASSVECYMKQH*ATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI
*********TKIIQRN*********ANFHPSIWGDRFLSYTS**************LKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI
**********************RRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI
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MSLQVSASPTKIIQRNAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGDISRDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query547 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.981 0.964 0.647 0.0
F6M8H7562 Probable sesquiterpene sy N/A no 0.950 0.925 0.576 0.0
B5A435559 Sesquiterpene synthase OS N/A no 0.957 0.937 0.572 0.0
F6M8H4559 Probable sesquiterpene sy N/A no 0.957 0.937 0.567 0.0
E3W207559 Sesquiterpene synthase OS N/A no 0.957 0.937 0.572 0.0
F6M8H5562 Probable sesquiterpene sy N/A no 0.950 0.925 0.571 0.0
F6M8H6562 Probable sesquiterpene sy N/A no 0.952 0.927 0.575 0.0
E3W208562 Sesquiterpene synthase OS N/A no 0.952 0.927 0.572 0.0
Q6Q3H2556 Valencene synthase OS=Vit no no 0.979 0.964 0.531 1e-172
O23945556 (-)-alpha-pinene synthase N/A no 0.985 0.969 0.485 1e-162
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/567 (64%), Positives = 435/567 (76%), Gaps = 30/567 (5%)

Query: 1   MSLQVSA---SPTKIIQRNAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKH-QE 56
           MS+Q S    +P+K    N   +  RR ANFHPSIWGD FLSY S+    DD   +H Q+
Sbjct: 1   MSVQSSGVLLAPSK----NLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQ 56

Query: 57  LKEEIRRML-KINKPSQNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNEN 115
           LKEE+R+ML   +  S   L LIDAIQRLGV+YHFESEIDE+L  + D     G   +  
Sbjct: 57  LKEEVRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFD-----GSVVSAE 111

Query: 116 DELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEE 175
           +++Y  SL+FRLLRQ GY +S D+F  FKD++GNFK SL+ DVRGMLSL+EATH  VH E
Sbjct: 112 EDVYTASLRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGE 171

Query: 176 NILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSH 235
           +ILDEALAFTT+ L+S   H  S+PLAEQV HAL QPI +GL RLEARHY  +YQ   SH
Sbjct: 172 DILDEALAFTTTHLQSATKHS-SNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSH 230

Query: 236 NEALLTFAKLDFNKLQKLHQKELGDIS---------------RDRIAECYFWILGVYFEP 280
           N+ALL  AKLDFN LQKLHQKEL DIS               RDR+ ECYFWILGVYFEP
Sbjct: 231 NKALLKLAKLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEP 290

Query: 281 QYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRA 340
           Q+ FARRILTKVI+MTS IDDIYDVYG +EELELFT A++RWDISAIDQLPEYM++CY+A
Sbjct: 291 QFFFARRILTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQA 350

Query: 341 LLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT 400
           LL VYSE E+++A +G+ YRL+YAK+AMKN V+ Y+ EAKW     IPTM+EYM VALVT
Sbjct: 351 LLYVYSEIEEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVT 410

Query: 401 SAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVAS 460
           SAY ML+TTSFVGMGD VTKESF+W+FS P+ +RAS++VCRLMDDM  H+FEQ RGHVAS
Sbjct: 411 SAYSMLATTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVAS 470

Query: 461 SVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIY 520
           +VECYMKQHGA+E+E  NEF + V  AWKDINE+CL PT +PMP+LMR+LNL RVIDVIY
Sbjct: 471 AVECYMKQHGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIY 530

Query: 521 KYEDGYTHSAVVLKDFVASLLINPVPI 547
           K EDGYTH   VLKDFV S+LI+PVPI
Sbjct: 531 KNEDGYTHFGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|O23945|PINS_FRAVE (-)-alpha-pinene synthase OS=Fragaria vesca PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
322424205541 germacrene D synthase [Citrus hystrix] 0.959 0.970 0.769 0.0
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.981 0.964 0.654 0.0
147828675557 hypothetical protein VITISV_013313 [Viti 0.981 0.964 0.652 0.0
147856860557 hypothetical protein VITISV_030783 [Viti 0.981 0.964 0.649 0.0
75223414557 RecName: Full=(-)-germacrene D synthase 0.981 0.964 0.647 0.0
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.981 0.964 0.640 0.0
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.981 0.964 0.627 0.0
41058926561 (-)-germacrene D synthase [Populus trich 0.967 0.942 0.617 0.0
336318889561 terpene synthase 1 [Populus trichocarpa] 0.967 0.942 0.612 0.0
224126255561 predicted protein [Populus trichocarpa] 0.967 0.942 0.612 0.0
>gi|322424205|gb|ADX01384.1| germacrene D synthase [Citrus hystrix] Back     alignment and taxonomy information
 Score =  859 bits (2219), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/542 (76%), Positives = 461/542 (85%), Gaps = 17/542 (3%)

Query: 21  STRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKPSQNNLDLIDA 80
           S   SANFHPSIWGD FL YT D  E  D S KH ELK+EIRRMLK    + + L+LIDA
Sbjct: 2   SVEGSANFHPSIWGDHFLQYTRDFQETGDRSVKHLELKKEIRRMLKAVNKTSHTLELIDA 61

Query: 81  IQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVF 140
           IQRLGVSYHFESEIDEILGK+H  ++DC L DNENDELYYISLQFRL RQ+GY+ISADVF
Sbjct: 62  IQRLGVSYHFESEIDEILGKMHKTYRDCDLCDNENDELYYISLQFRLFRQNGYRISADVF 121

Query: 141 KRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQISSP 200
             FK SDG FK SLAKDVRGMLSL+EATHL VH ENILDEALAFTTS LES+A  Q+ SP
Sbjct: 122 NTFKGSDGKFKASLAKDVRGMLSLYEATHLRVHGENILDEALAFTTSHLESVAK-QVCSP 180

Query: 201 LAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQKELGD 260
           L EQVKHAL+QPIH+GL+RLEARHYIPIYQ +SSHNEALLTFAKL FN LQKLHQKELGD
Sbjct: 181 LVEQVKHALVQPIHKGLERLEARHYIPIYQGESSHNEALLTFAKLGFNGLQKLHQKELGD 240

Query: 261 ISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDV 305
           ISR               DRIAE YFW +GV+FEPQYSF R++ TKVI MTS IDDIYDV
Sbjct: 241 ISRWWKELDFAHKLPFVRDRIAEVYFWAVGVHFEPQYSFTRKLFTKVIYMTSIIDDIYDV 300

Query: 306 YGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAK 365
           YGKIEEL+LFTSAI+RWDI+AIDQLPEYMKLC RAL++VYSE EKDL  QGKLYRLHYAK
Sbjct: 301 YGKIEELDLFTSAIERWDINAIDQLPEYMKLCIRALINVYSEVEKDLVSQGKLYRLHYAK 360

Query: 366 KAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEW 425
           +AMKN VK+YFFEAKWCHQNY+PT+DEYMTVAL++S +P LST SFVG+GDIVTKESFEW
Sbjct: 361 EAMKNQVKHYFFEAKWCHQNYVPTVDEYMTVALISSGHPNLSTISFVGLGDIVTKESFEW 420

Query: 426 LFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFRKQVS 485
           LFSNPR IRAS  V RLM+DM SH+FEQSRGHVASSVECY+ Q+GATEEEA +EFRKQVS
Sbjct: 421 LFSNPRSIRASCAVGRLMNDMVSHKFEQSRGHVASSVECYINQYGATEEEAYSEFRKQVS 480

Query: 486 NAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPV 545
           NAWKDINE+CLRPTV+P+PLLMRILNLTR  DVIYKY+DGYT+S   LKDF+ SLLINPV
Sbjct: 481 NAWKDINEECLRPTVVPVPLLMRILNLTRAADVIYKYKDGYTYSE-ELKDFIVSLLINPV 539

Query: 546 PI 547
           PI
Sbjct: 540 PI 541

Source: Citrus hystrix

Species: Citrus hystrix

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|41058926|gb|AAR99061.1| (-)-germacrene D synthase [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|336318889|gb|AEI52901.1| terpene synthase 1 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126255|ref|XP_002319795.1| predicted protein [Populus trichocarpa] gi|222858171|gb|EEE95718.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query547
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.954 0.933 0.578 7.4e-169
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.972 0.967 0.478 8.9e-141
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.908 0.879 0.470 2e-127
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.912 0.884 0.467 1.8e-126
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.956 0.959 0.454 1.3e-123
UNIPROTKB|B2KSJ6560 B2KSJ6 "Alpha-farnesene syntha 0.978 0.955 0.447 1.4e-119
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.978 0.965 0.431 6.9e-118
UNIPROTKB|Q8LSC3583 Q8LSC3 "Germacrene A synthase 0.956 0.897 0.430 3e-117
UNIPROTKB|Q8LSC2558 Q8LSC2 "Germacrene A synthase 0.981 0.962 0.418 5.6e-116
UNIPROTKB|D0VMR8547 C4 "Delta-guaiene synthase 3" 0.954 0.954 0.42 1.9e-115
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1642 (583.1 bits), Expect = 7.4e-169, P = 7.4e-169
 Identities = 317/548 (57%), Positives = 410/548 (74%)

Query:    19 KDSTRRSANFHPSIWGDRFLSYT-SDSMEKDDGSAKHQELKEEIRRMLK--INKPSQNNL 75
             K+ +R  ANF PSIWGDRF++Y   D  E+     + +ELKE++RR L   ++KP Q  L
Sbjct:    15 KELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRRELAATVDKPLQQ-L 73

Query:    76 DLIDAIQRLGVSYHFESEIDEILGK--LHD-AHQDCGLGDNENDELYYISLQFRLLRQHG 132
             ++IDA QRLG++YHFE+EI+E L    LH     +C  G ++   LY ++L FRLLRQ G
Sbjct:    74 NIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHD---LYSVALWFRLLRQDG 130

Query:   133 YKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESI 192
             YK+S DVF +F+D + NFK SL +D +G+L L+EATHL VH E +LD+AL F  ++LESI
Sbjct:   131 YKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESI 190

Query:   193 AAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQK 252
               H ++ PLAEQV+HAL +P+ +GL RLEA ++  IY+   SHN+ALL  AKLDFN LQ 
Sbjct:   191 VNH-LNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLAKLDFNLLQS 249

Query:   253 LHQKELGDISR---------------DRIAECYFWILGVYFEPQYSFARRILTKVISMTS 297
             LH+KEL D++R               DR+ E YFW+LGVYFEPQYS AR+I+ KV +M S
Sbjct:   250 LHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMIS 309

Query:   298 TIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGK 357
             TIDDIYD YG ++ELELFT A++RWD+ ++DQLPEYMK CY+++LDVY+E E+++  QG 
Sbjct:   310 TIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEEMDNQGS 369

Query:   358 LYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDI 417
             L+R+HYAK+ MK +V+ Y  EAKWCH+ Y+PT +EYM VALVTS Y  L+T S++GMG+I
Sbjct:   370 LFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISYLGMGEI 429

Query:   418 VTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEAC 477
              +KE+F+WLFS+P  I AS  VCRLMDDM SH+FEQ RGHVAS +ECYMKQ+G TEEEA 
Sbjct:   430 ASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGVTEEEAH 489

Query:   478 NEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFV 537
             +EFRKQ+  AWKDINE+CLRP  +P PLLMRILNLTRVIDVIYK EDGYTH    +KD +
Sbjct:   490 DEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKKAMKDNI 549

Query:   538 ASLLINPV 545
             ASLLI+P+
Sbjct:   550 ASLLIDPM 557
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC2 Q8LSC2 "Germacrene A synthase short form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms
UNIPROTKB|D0VMR8 C4 "Delta-guaiene synthase 3" [Aquilaria crassna (taxid:223751)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84UU4HUMS_ARATH4, ., 2, ., 3, ., -0.42640.95420.9542yesno
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.57110.95060.9252N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.56720.95790.9373N/Ano
F6M8H7SMST_SANMU4, ., 2, ., 3, ., -0.57660.95060.9252N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.57580.95240.9270N/Ano
Q43714DCS3_GOSAR4, ., 2, ., 3, ., 1, 30.50710.97070.9567N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.57270.95790.9373N/Ano
E3W208SPISS_SANSP4, ., 2, ., 3, ., -0.57220.95240.9270N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.57270.95790.9373N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.64720.98170.9640yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027449001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (557 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-113
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-111
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 4e-77
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 8e-45
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 3e-40
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 4e-29
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 7e-22
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  732 bits (1891), Expect = 0.0
 Identities = 285/544 (52%), Positives = 376/544 (69%), Gaps = 24/544 (4%)

Query: 23  RRSANFHPSIWGD-RFLSYTSDSMEKDDGSAKHQELKEEIRRMLKINKP---SQNNLDLI 78
           R SANF PS+WGD  FLS +SD  E+D+   + +ELKEE+R+ML+ ++        L LI
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLI 60

Query: 79  DAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISAD 138
           D +QRLG+SYHFE EI EIL  ++    +   G++  D+LY  +L FRLLRQHGY +S+D
Sbjct: 61  DRLQRLGISYHFEDEIKEILDYIYRYWTE--RGESNEDDLYTTALGFRLLRQHGYNVSSD 118

Query: 139 VFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILDEALAFTTSQLESIAAHQ-- 196
           VFK+FKD DG FK SL +DV+GMLSL+EA+HL    E+ILDEAL+FTT  LE        
Sbjct: 119 VFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWI 178

Query: 197 ISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK 256
           I   L+ ++++AL  P+H  L RLEAR YI  Y+++  HNE LL  AKLDFN LQ LHQ+
Sbjct: 179 IDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE 238

Query: 257 ELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDD 301
           EL  +S               RDR+ ECYFW  G YFEPQYS AR  L K I++ + IDD
Sbjct: 239 ELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDD 298

Query: 302 IYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRL 361
            YDVYG +EELELFT A++RWDISAIDQLPEYMK+ ++ALL+  +E E++L  +G  Y +
Sbjct: 299 TYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV 358

Query: 362 HYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKE 421
            Y K+A K++VK Y  EAKW H+ Y+PT +EYM  ALV+     L  TSF+GMGDI+T+E
Sbjct: 359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEE 418

Query: 422 SFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFR 481
           +FEWL S P+ +RASS + RLM+D+A++E E  RG VASS+ECYMK++G +EEEA  E +
Sbjct: 419 AFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIK 478

Query: 482 KQVSNAWKDINEDCLRP-TVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASL 540
           K + +AWK++NE+ L+P + +P P+  R LNL RVIDV YK  DG+TH    +KD + SL
Sbjct: 479 KMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSL 538

Query: 541 LINP 544
           L  P
Sbjct: 539 LFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 547
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.66
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.52
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 92.21
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 90.1
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 89.93
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 87.5
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 86.41
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 86.07
PLN02890422 geranyl diphosphate synthase 80.73
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 80.51
PLN02857416 octaprenyl-diphosphate synthase 80.36
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=7.3e-149  Score=1228.45  Aligned_cols=519  Identities=55%  Similarity=0.911  Sum_probs=496.5

Q ss_pred             CCCCCCCCCCCcc-CccccCCCCcchhhhHHHHHHHHHHHHHHhhc---cCCcccchhhHHHHHHhCcccccHHHHHHHH
Q 039366           23 RRSANFHPSIWGD-RFLSYTSDSMEKDDGSAKHQELKEEIRRMLKI---NKPSQNNLDLIDAIQRLGVSYHFESEIDEIL   98 (547)
Q Consensus        23 r~~~~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~---~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L   98 (547)
                      |++++||||+||| +|++++++..+...+.+++++||++||+||..   ..|++++|+|||+||||||+|||++||+++|
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L   80 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL   80 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence            7899999999999 77776655433337899999999999999986   5799999999999999999999999999999


Q ss_pred             HHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCchHH
Q 039366           99 GKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENIL  178 (547)
Q Consensus        99 ~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~iL  178 (547)
                      ++||+.|...|  .....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+||
T Consensus        81 ~~i~~~~~~~~--~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iL  158 (542)
T cd00684          81 DYIYRYWTERG--ESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDIL  158 (542)
T ss_pred             HHHHHhhcccc--cccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHH
Confidence            99999853222  1135799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHhh---cCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHH
Q 039366          179 DEALAFTTSQLESIAAH---QISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQ  255 (547)
Q Consensus       179 dea~~ft~~~L~~~~~~---~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq  255 (547)
                      |||++||++||+++++.   + +++|+++|++||++|||+++||||||+||++|++++++|++||||||+|||+||++||
T Consensus       159 deA~~ft~~~L~~~~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq  237 (542)
T cd00684         159 DEALSFTTKHLEEKLESNWII-DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ  237 (542)
T ss_pred             HHHHHHHHHHHHHHhhccCCC-CchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHH
Confidence            99999999999999886   5 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHh
Q 039366          256 KELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIK  320 (547)
Q Consensus       256 ~EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aie  320 (547)
                      +||++++               |||++|||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+
T Consensus       238 ~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~  317 (542)
T cd00684         238 EELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVE  317 (542)
T ss_pred             HHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHH
Confidence            9999999               9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhcc
Q 039366          321 RWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT  400 (547)
Q Consensus       321 rWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS  400 (547)
                      |||.++++++|+|||+||.+|+++++++++++.++++.++++|++++|+++++||++||+|+++|++||++|||++|.+|
T Consensus       318 rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S  397 (542)
T cd00684         318 RWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVS  397 (542)
T ss_pred             hccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHH
Confidence            99999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHH
Q 039366          401 SAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEF  480 (547)
Q Consensus       401 ~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i  480 (547)
                      +|++++++++++++|+.+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|+|+|++++
T Consensus       398 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i  477 (542)
T cd00684         398 IGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEI  477 (542)
T ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999997777999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCC-CCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccc
Q 039366          481 RKQVSNAWKDINEDCLRP-TVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINP  544 (547)
Q Consensus       481 ~~~I~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~P  544 (547)
                      +++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||++|
T Consensus       478 ~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         478 KKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999999987 7899999999999999999999999999999878999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-160
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-142
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-142
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-141
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-140
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-140
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-140
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-139
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-139
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-138
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-95
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-93
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-82
2j5c_A569 Rational Conversion Of Substrate And Product Specif 2e-81
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 3e-78
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 8e-68
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-65
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 8e-22
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  561 bits (1445), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 282/565 (49%), Positives = 386/565 (68%), Gaps = 29/565 (5%)
Query: 1   MSLQVSASPTKIIQRNAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEE 60
           M+ QVS  P+     ++ KD  R  A+F PSIWGD FL+    +++ +    +HQ+LKEE
Sbjct: 1   MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAE-TEKRHQQLKEE 58
Query: 61  IRRMLKINKPSQNN---LDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDE 117
           +R+M  I  P  N+   L  ID++QRLGVSYHF  EI++ L  ++  + D      END 
Sbjct: 59  VRKM--IVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-----END- 110
Query: 118 LYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENI 177
           LY  S++FRLLR+HGY +S DVF +FKD  GNFK+S+  DVRG+L L++A++L VH E+I
Sbjct: 111 LYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDI 170
Query: 178 LDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNE 237
           LDEA++FTT  L S+A   +  PL+E+V HAL Q I RGL R+EARHY+ +YQ+  SHN+
Sbjct: 171 LDEAISFTTHHL-SLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNK 229
Query: 238 ALLTFAKLDFNKLQKLHQKELGDI---------------SRDRIAECYFWILGVYFEPQY 282
           ALL FAK+DFN LQ LH+KEL +I               +RDR+ E YFWI GVYFEPQY
Sbjct: 230 ALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQY 289
Query: 283 SFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALL 342
           S  R++LTKVI+M S +DD YD Y   EEL  +T+AI+RWDI  ID++PEYMK  Y+ALL
Sbjct: 290 SLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALL 349
Query: 343 DVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSA 402
           DVY E  + +A  G+ YR+ YAK AM  + ++Y  EAKW  QNY P+ +E+   AL T  
Sbjct: 350 DVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCG 409
Query: 403 YPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSV 462
           Y ML+ TSFVGMGDIVT E+F+W  S+P+ I+AS+++CR MDD+A H+F+  R    S++
Sbjct: 410 YAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAI 469
Query: 463 ECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKY 522
           ECYM+++G T +EA + F K V +AWKD+N++ L+PT +P  +L R LNL RV+DV+Y+ 
Sbjct: 470 ECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYRE 529
Query: 523 EDGYTHSAVVLKDFVASLLINPVPI 547
            DGYT+     K  + SLLI P+ +
Sbjct: 530 GDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query547
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-170
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-168
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-167
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-108
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-37
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 4e-33
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 1e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 2e-12
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 1e-07
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  590 bits (1522), Expect = 0.0
 Identities = 275/563 (48%), Positives = 380/563 (67%), Gaps = 25/563 (4%)

Query: 1   MSLQVSASPTKIIQRNAEKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEE 60
           M+ QVS  P+     ++ KD  R  A+F PSIWGD FL+    +++ +    +HQ+LKEE
Sbjct: 1   MASQVSQMPSSS-PLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAET-EKRHQQLKEE 58

Query: 61  IRRMLKINKPS-QNNLDLIDAIQRLGVSYHFESEIDEILGKLHDAHQDCGLGDNENDELY 119
           +R+M+     +    L  ID++QRLGVSYHF  EI++ L  ++  + D        ++LY
Sbjct: 59  VRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA------ENDLY 112

Query: 120 YISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEENILD 179
             S++FRLLR+HGY +S DVF +FKD  GNFK+S+  DVRG+L L++A++L VH E+ILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172

Query: 180 EALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEAL 239
           EA++FTT  L    A  +  PL+E+V HAL Q I RGL R+EARHY+ +YQ+  SHN+AL
Sbjct: 173 EAISFTTHHLSLAVAS-LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKAL 231

Query: 240 LTFAKLDFNKLQKLHQKELGDIS---------------RDRIAECYFWILGVYFEPQYSF 284
           L FAK+DFN LQ LH+KEL +I                RDR+ E YFWI GVYFEPQYS 
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSL 291

Query: 285 ARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDV 344
            R++LTKVI+M S +DD YD Y   EEL  +T+AI+RWDI  ID++PEYMK  Y+ALLDV
Sbjct: 292 GRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDV 351

Query: 345 YSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTSAYP 404
           Y E  + +A  G+ YR+ YAK AM  + ++Y  EAKW  QNY P+ +E+   AL T  Y 
Sbjct: 352 YEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYA 411

Query: 405 MLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVEC 464
           ML+ TSFVGMGDIVT E+F+W  S+P+ I+AS+++CR MDD+A H+F+  R    S++EC
Sbjct: 412 MLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIEC 471

Query: 465 YMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYED 524
           YM+++G T +EA + F K V +AWKD+N++ L+PT +P  +L R LNL RV+DV+Y+  D
Sbjct: 472 YMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGD 531

Query: 525 GYTHSAVVLKDFVASLLINPVPI 547
           GYT+     K  + SLLI P+ +
Sbjct: 532 GYTYVGKAAKGGITSLLIEPIAL 554
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.97
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.68
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.97
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 88.51
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 88.03
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 87.3
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 85.85
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 84.11
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 83.44
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-163  Score=1332.84  Aligned_cols=522  Identities=52%  Similarity=0.912  Sum_probs=484.5

Q ss_pred             cccccCCCCCCCCCCCccCccccCCCCcchhhhHHHHHHHHHHHHHHhhc-cCCcccchhhHHHHHHhCcccccHHHHHH
Q 039366           18 EKDSTRRSANFHPSIWGDRFLSYTSDSMEKDDGSAKHQELKEEIRRMLKI-NKPSQNNLDLIDAIQRLGVSYHFESEIDE   96 (547)
Q Consensus        18 ~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~l~liD~lqrLGi~~hF~~EI~~   96 (547)
                      +.++.||++|||||+|||+||++ ++....+.+.+|+++||++||+||.+ ..|++++|+|||+||||||+|||++||++
T Consensus        17 ~~~~~R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~   95 (554)
T 3g4d_A           17 NKDEMRPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIED   95 (554)
T ss_dssp             --------CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHH
T ss_pred             cCCCCCCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHH
Confidence            35568999999999999999997 43324567899999999999999976 57999999999999999999999999999


Q ss_pred             HHHHhHhhccCCCCCCCCCCchhHHHHHHHHHHhcCccccccccccccccccccccccccchhhhhhhhhhhccCCCCch
Q 039366           97 ILGKLHDAHQDCGLGDNENDELYYISLQFRLLRQHGYKISADVFKRFKDSDGNFKTSLAKDVRGMLSLFEATHLGVHEEN  176 (547)
Q Consensus        97 ~L~~i~~~~~~~~~~~~~~~dl~~~al~FRLLR~~Gy~vS~Dvf~~F~d~~g~F~~~l~~dv~~lL~LyeAs~l~~~gE~  176 (547)
                      +|++||+. .     .....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+
T Consensus        96 ~L~~i~~~-~-----~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~  169 (554)
T 3g4d_A           96 ELENIYHN-N-----NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGED  169 (554)
T ss_dssp             HHHHHHHS-C-----CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHhc-c-----CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcH
Confidence            99999985 1     11237999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHhhcCCCChHHHHHHhcCCCcccCchhhHHhhchhhhcccCcCcHHHHHHHhhchHHHHHHHHH
Q 039366          177 ILDEALAFTTSQLESIAAHQISSPLAEQVKHALIQPIHRGLQRLEARHYIPIYQEQSSHNEALLTFAKLDFNKLQKLHQK  256 (547)
Q Consensus       177 iLdea~~ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~  256 (547)
                      |||||+.||++||++.++++ +++|+++|+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+
T Consensus       170 iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~  248 (554)
T 3g4d_A          170 ILDEAISFTTHHLSLAVASL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRK  248 (554)
T ss_dssp             HHHHHHHHHHHHHHHHSTTC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999988766 78899999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhhhhhhcccCCHHHHHHHHHHHhh
Q 039366          257 ELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKR  321 (547)
Q Consensus       257 EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~viDD~fD~ygt~eEl~~ft~aier  321 (547)
                      ||++++               |||+||||||++|++|||+||.+|+++||+++|++++||+||+|||+|||+.||+||+|
T Consensus       249 El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~R  328 (554)
T 3g4d_A          249 ELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIER  328 (554)
T ss_dssp             HHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHh
Confidence            999998               99999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChHHHHhhhhccc
Q 039366          322 WDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVTS  401 (547)
Q Consensus       322 WD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EAkW~~~g~vPt~eEYl~~~~iS~  401 (547)
                      ||++++++||+|||+||.+|+|+++|+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+||.+|+
T Consensus       329 WD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSs  408 (554)
T 3g4d_A          329 WDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTC  408 (554)
T ss_dssp             CCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGS
T ss_pred             cCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCcchhhHHHhhCCCCHHHHHHHHH
Q 039366          402 AYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVASSVECYMKQHGATEEEACNEFR  481 (547)
Q Consensus       402 g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~n~V~cyMke~g~S~EeA~~~i~  481 (547)
                      |++++++++++++|+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++
T Consensus       409 g~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~  488 (554)
T 3g4d_A          409 GYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFN  488 (554)
T ss_dssp             CHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccCCCCCCCchhHHHHHHhhhccccCC
Q 039366          482 KQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYEDGYTHSAVVLKDFVASLLINPVPI  547 (547)
Q Consensus       482 ~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~  547 (547)
                      ++|+++||+||++|++++++|++|+++++|+||++++||+++||||.|++.||++|++||++|||+
T Consensus       489 ~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          489 KHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999999988999999999999999999999999999999778999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 547
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-142
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-138
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-72
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 7e-71
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 5e-58
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 3e-42
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  411 bits (1059), Expect = e-142
 Identities = 108/326 (33%), Positives = 178/326 (54%), Gaps = 16/326 (4%)

Query: 236 NEALLTFAKLDFNKLQKLHQKELGDIS---------------RDRIAECYFWILGVYFEP 280
           N  +   AKL+FN +Q  HQ+EL D+S               RDR+ E +FW +G++   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 281 QYSFARRILTKVISMTSTIDDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRA 340
           Q+ + R++   +I + + IDDIYDVYG ++ELELFT   KRWD  +I +LP YM+LCY  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 341 LLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEAKWCHQNYIPTMDEYMTVALVT 400
           + +  S+A  D+  +   + L Y +K++ ++V+ YF EAKW H  Y P++DEY+ +A ++
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 401 SAYPMLSTTSFVGMGDIVTKES-FEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVA 459
            A P + + ++    +     +  + L+     +  + ++ RL DD+ +  FE +RG V 
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 460 SSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVI 519
            +++CYMK+  A+EEEA    +  +  AWKD+N         P  ++    N+ RV   I
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFI 301

Query: 520 YKYEDGYTHSAVVLKDFVASLLINPV 545
           Y + DG+        + +A LL  P 
Sbjct: 302 YLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query547
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.95
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.3
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 82.18
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=3.3e-93  Score=736.19  Aligned_cols=312  Identities=49%  Similarity=0.902  Sum_probs=296.8

Q ss_pred             CcHHHHHHHhhchHHHHHHHHHHhhhhh---------------hhhHHHHHhhhhccccCCCchhHHHHHHhhhhhhhhh
Q 039366          235 HNEALLTFAKLDFNKLQKLHQKELGDIS---------------RDRIAECYFWILGVYFEPQYSFARRILTKVISMTSTI  299 (547)
Q Consensus       235 ~n~~lLelAkldFn~~Q~~hq~EL~~l~---------------Rdr~ve~yfw~~~~~feP~~s~~Ri~~aK~~~li~vi  299 (547)
                      .|++||||||||||+||++||+||++|+               |||+||||||++|++|||+||.+|++|||++++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            4899999999999999999999999999               9999999999999999999999999999999999999


Q ss_pred             hhhhcccCCHHHHHHHHHHHhhccchhhccCChhHHHHHHHHHHHHHHHHHHHcccCCccHHHHHHHHHHHHHHHHHHHH
Q 039366          300 DDIYDVYGKIEELELFTSAIKRWDISAIDQLPEYMKLCYRALLDVYSEAEKDLAPQGKLYRLHYAKKAMKNIVKNYFFEA  379 (547)
Q Consensus       300 DD~fD~ygt~eEl~~ft~aierWD~~~~~~lPeymk~~f~al~~~~~ei~~~~~~~~~~~~~~~l~~~w~~~~~a~l~EA  379 (547)
                      ||+||+|||+||++.||+||+|||.+++++||+|||+||.+|++++++++.++.++||.+++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA  160 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES  160 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             HHhhCCCCCChHHHHhhhhcccchhHHHHHHHHhcCCCcchhHHhhhcchhHHHHHHHHHHHHccCCcChHHhhhcCCCc
Q 039366          380 KWCHQNYIPTMDEYMTVALVTSAYPMLSTTSFVGMGDIVTKESFEWLFSNPRFIRASSVVCRLMDDMASHEFEQSRGHVA  459 (547)
Q Consensus       380 kW~~~g~vPt~eEYl~~~~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~kkE~~rG~~~  459 (547)
                      +|+++||+||+||||++|.+|+|++++++++++++|. ++++.++|++++|+|+++++.|+||+|||+|+++|+++|+++
T Consensus       161 ~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~  239 (328)
T d5easa2         161 TWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA  239 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999997 577889999999999999999999999999999999999999


Q ss_pred             chhhHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhhhhhceeccC-CCCCCCchhHHHHHH
Q 039366          460 SSVECYMKQHGATEEEACNEFRKQVSNAWKDINEDCLRPTVLPMPLLMRILNLTRVIDVIYKYE-DGYTHSAVVLKDFVA  538 (547)
Q Consensus       460 n~V~cyMke~g~S~EeA~~~i~~~I~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~  538 (547)
                      |+|.|||+|+|+|+|||+++++++|+++||+||+++++++++|++|+++++|+||+++++|++| ||||+|++.+|++|+
T Consensus       240 s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i~  319 (328)
T d5easa2         240 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII  319 (328)
T ss_dssp             CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987 999999877999999


Q ss_pred             hhhccccCC
Q 039366          539 SLLINPVPI  547 (547)
Q Consensus       539 ~ll~~Pi~~  547 (547)
                      +||++||||
T Consensus       320 ~ll~epi~~  328 (328)
T d5easa2         320 NLLVDSIKI  328 (328)
T ss_dssp             HHHTCCCCC
T ss_pred             HHhccCCcC
Confidence            999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure