Citrus Sinensis ID: 039375

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTSGESNTPPR
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccHHHHcccccccEEEEEccccccEEEccccccccccHHHHcccccccEEEEEEEccccccccccccccccEEEEEcccccccccccccHHccccccHHHcccHHHHHHccccccccccccccccccccccEEEccccccccccEEcccccccccccHHHHHcccccccccccccccccccEEEEccccccccccccccccccccccEEEEccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccccEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccEEEccccccccEccHHHHHHHHHHHEEEEcccccEEEEEccccccccccHHHHHccccccEEEEEEccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHcHcHccEEEEccccHHHHHHHHcccEEEEcccccEEEEccccccccccccHHHHHHHHHHccccccccccccccccccEEEEEEccHcHHHcccHHHHHHHHHHcEEEEcccHHHHHEEEcccccccccEEEcccccEEEEccccHHccccccccccccccccEEEEEcccccEEEcccccccccc
Coil and Loop (DISEMBL)
pkalgqvtklrlldlrdcfhlkviapNVISSLIRLEELCMGNCSVEWEVERAntersnasldelmllpwlttleidvkndsiLQEGFLARKLERFKISIgnesfmaslpvtkdwfrsrshFLINHNHERlrelklkpdftdICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEvgndkillpsssvsfrNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVvindkegvdIEEIVFSKLKALILcdldsltsfcsanytfkfpsleylevigcpkmktftsgesntppr
Flexible Loop (DISEMBL)
pkalgqvtklrlldlrdcfhlkVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEvgndkillpsssvsfrNLTKLVAVGCKELIHLvtsstaktlvRLVTVQVYGCRAMtevvindkegvDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKmktftsgesntppr
Low Complexity Region (SEG)
PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTSGESNTPPR
Disordered region (IsUnstruct)
*****QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKM*************
Disordered Region (DISOPRED)
PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEG*D**EIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTS********
Disordered Region (DISEMBL)
PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTF**********
Disordered Region (DISPRO)
PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTSG*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTSGESNTPPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q42484	909	Disease resistance protei	yes	no	0.819	0.280	0.241	1e-05
Q9T048	985	Disease resistance protei	no	no	0.321	0.101	0.281	0.0003

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 132/331 (39%), Gaps = 76/331 (22%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVER-ANTERSNA 59
           P+ LG + KL+ LDL+    L+ I  + I  L +LE L +      WE++     E    
Sbjct: 597 PQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEEL 656

Query: 60  SLDELMLLPWLTTLEIDVKN----DSILQEGFLARKLERFKISIGNESFMASLPVTKDWF 115
              +L  L  LTTL I V +     ++ + G L + ++   +   NE    +LP      
Sbjct: 657 GFADLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHLHVEECNELLYFNLPS----- 711

Query: 116 RSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRRGIFN 175
                 L NH    LR L +K            + +++EY+                   
Sbjct: 712 ------LTNHGR-NLRRLSIK------------SCHDLEYLV------------------ 734

Query: 176 GRMLRETFEEVGNDKILLPSSSV----SFRNLTKLVA----------VGCKELIH---LV 218
                 T  +  ND   LPS  V    S  NLT++            + C  + H   L 
Sbjct: 735 ------TPADFEND--WLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLK 786

Query: 219 TSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEE-IVFSKLKALILCDLDSLTSFCS 277
             S  + L +L  ++++ CR + E +I++ E   +E+  +F  LK L   DL  L S   
Sbjct: 787 NVSWVQKLPKLEVIELFDCREIEE-LISEHESPSVEDPTLFPSLKTLRTRDLPELNSILP 845

Query: 278 ANYTFKFPSLEYLEVIGCPKMKTFTSGESNT 308
           + ++F+   +E L +  CP++K     E  T
Sbjct: 846 SRFSFQ--KVETLVITNCPRVKKLPFQERRT 874

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ L ++ + R LDL    HL+ I   V+S L  LE L M +    W V+   T++  A+
Sbjct: 613 PRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWSVQ-GETQKGQAT 671

Query: 61  LDELMLLPWLTTLEIDVKNDSIL--QEGFLARKLERFKISIGN 101
           ++E+  L  L  L I + +   L  +     ++L++F++ +G+
Sbjct: 672 VEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGS 714

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
224083434	1144	cc-nbs-lrr resistance protein [Populus t	0.797	0.216	0.308	2e-24
356555123	1512	PREDICTED: disease resistance protein At	0.842	0.173	0.341	1e-23
356546774	1168	PREDICTED: disease resistance protein At	0.836	0.222	0.336	3e-23
359488027	1520	PREDICTED: disease resistance protein At	0.855	0.175	0.318	1e-21
296087872	1152	unnamed protein product [Vitis vinifera]	0.855	0.230	0.318	1e-21
297737422	1940	unnamed protein product [Vitis vinifera]	0.948	0.152	0.321	2e-21
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.871	0.206	0.310	3e-20
147777048	1460	hypothetical protein VITISV_009359 [Viti	0.836	0.178	0.321	5e-20
255563252	1603	Disease resistance protein RPS5, putativ	0.852	0.165	0.313	1e-19
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.871	0.202	0.324	6e-19

>gi|224083434|ref|XP_002307025.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222856474|gb|EEE94021.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 149/331 (45%), Gaps = 83/331 (25%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ +GQ+TKLR+LDL DCF L VI PN+ S+L  LEELCMGN    W  E  +    NAS
Sbjct: 612 PRQIGQLTKLRMLDLSDCFELDVIPPNIFSNLSMLEELCMGNSFHHWATEGED----NAS 667

Query: 61  LDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSH 120
           L EL  LP LT ++I V +  ++ +G L+++LERF+I IG+           DW      
Sbjct: 668 LVELDHLPHLTNVDIHVLDSHVMSKGMLSKRLERFRIFIGD---------VWDW------ 712

Query: 121 FLINHNHERLRELKLKPDFT----------------DICSMKLQAINNVEYISQSRITLT 164
              +  ++ LR LKLK + +                D+  ++L+ +NNV           
Sbjct: 713 ---DGVYQSLRTLKLKLNTSASNLEHGVLMLLKRTQDLYLLELKGVNNV----------- 758

Query: 165 VSLFIRRGIFNGRMLR----ETFEEVGNDKILLPS------------------------- 195
           VS     G    R L        + + N     PS                         
Sbjct: 759 VSELDTEGFLQLRHLHLHNSSDIQYIINTSSEFPSHVFPVLESLFLYNLVSLEKLCHGIL 818

Query: 196 SSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEG----- 250
           ++ SFR LT +    C +L HL   S A+ L +L T+ +  C  M EVV  + +      
Sbjct: 819 TAESFRKLTIIEVGNCVKLKHLFPFSVARGLSQLQTINISFCLTMEEVVAEEGDEFEDSC 878

Query: 251 VDIEEIVFSKLKALILCDLDSLTSFCSANYT 281
            +I+ + F++L +L L  L  L +FCS   T
Sbjct: 879 TEIDVMEFNQLSSLSLQCLPHLKNFCSREKT 909

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555123|ref|XP_003545887.1| PREDICTED: disease resistance protein At4g27190-like [Glycine max]

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 153/313 (48%), Gaps = 51/313 (16%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNC-SVEWEVERANTERSNA 59
           P+ +  +T LRLL+L DC+ L+VI  N+ S+L  LEEL MG C S+EWEVE + +E  NA
Sbjct: 579 PEEITHLTHLRLLNLTDCYELRVIPTNLTSNLTCLEELYMGGCNSIEWEVEGSRSESKNA 638

Query: 60  SLDELMLLPWLTTLEIDVKNDSILQEGF-LARKLERFKISIGNESFMASLPVTKDWFRSR 118
           SL EL  L  LTTLEI +K+ S+L  GF    KLE + I IGN S         +W RS+
Sbjct: 639 SLSELQNLHNLTTLEISIKDTSVLSRGFQFPAKLETYNILIGNIS---------EWGRSQ 689

Query: 119 SHFLINHNHERL---RELKL-KPDFTDICSM---------KLQAINNVEY-ISQSRITLT 164
           + +      E L   R LKL    +T I S+         +L+ + ++ Y +        
Sbjct: 690 NWY-----GEALGPSRTLKLTGSSWTSISSLTTVEDLRLAELKGVKDLLYDLDVEGFPQL 744

Query: 165 VSLFIRRG-----IFNGRMLRETFEEV-GNDKILL-------------PSSSVSFRNLTK 205
             L I        I N R LR        N K LL             P  ++SF  L  
Sbjct: 745 KHLHIHGSDELLHIINSRRLRNPHSSAFPNLKSLLLYNLYTMEEICHGPIPTLSFAKLEV 804

Query: 206 LVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIE--EIVFSKLKA 263
           +    C  L +L+  S A+ L +L  +++  CR M E++  ++   + E  EIV  +L++
Sbjct: 805 IKVRNCHGLDNLLLYSLARNLSQLHEMEINNCRCMKEIIAMEEHEDEKELLEIVLPELRS 864

Query: 264 LILCDLDSLTSFC 276
           L L +L  L SFC
Sbjct: 865 LALVELTRLQSFC 877

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546774|ref|XP_003541797.1| PREDICTED: disease resistance protein At4g27190-like [Glycine max]

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 147/306 (48%), Gaps = 46/306 (15%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           PK +G +T LRLL+L  C  L+VI  N+ISSL  LEEL MG+C +EWEVE   +E +NAS
Sbjct: 599 PKEIGHLTHLRLLNLATCSKLRVIPANLISSLTCLEELYMGSCPIEWEVEGRKSESNNAS 658

Query: 61  LDELMLLPWLTTLEIDVKNDSILQEGF-LARKLERFKISIGNESFMASLPVTKDWFRSRS 119
           L EL  L  LTTLEI  ++ S+L +      KLER+ IS+G   +M        W R RS
Sbjct: 659 LGELWNLNQLTTLEISNQDTSVLLKDLEFLEKLERYYISVG---YM--------WVRLRS 707

Query: 120 HFLINHNHERLRELKLKPDF---------TDICSMKLQAINNVEYISQSRITLTVSLFIR 170
                 +HE  R LKL              D+    L+ + +V Y       L   L I+
Sbjct: 708 ----GGDHETSRILKLTDSLWTNISLTTVEDLSFANLKDVKDV-YQLNDGFPLLKHLHIQ 762

Query: 171 RG-----IFNGRMLRETFEEVGNDKILL-------------PSSSVSFRNLTKLVAVGCK 212
                  I N   +   +    N + L+             P  + SF  L  +  V C 
Sbjct: 763 ESNELLHIINSTEMSTPYSAFPNLETLVLFNLSNMKEICYGPVPAHSFEKLQVITVVDCD 822

Query: 213 ELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVI--NDKEGVDIEEIVFSKLKALILCDLD 270
           E+ +L+  S  K L +L  +Q+  C+ M E++   N ++  ++ EIVF +L ++ L  L 
Sbjct: 823 EMKNLLLYSLLKNLSQLREMQITRCKNMKEIIAVENQEDEKEVSEIVFCELHSVKLRQLP 882

Query: 271 SLTSFC 276
            L SFC
Sbjct: 883 MLLSFC 888

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488027|ref|XP_002269288.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 35/301 (11%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ + Q+T LRL DLRDC  L+ I PNVISSL +LE LCM N    WEVE     +SNAS
Sbjct: 612 PREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWEVEG----KSNAS 667

Query: 61  LDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGN-ESFMASLPVTKDWFRSR- 118
           + E   LP+LTTL+I + +  +L    L  KL R++I IG+  S+  + P TK    ++ 
Sbjct: 668 IAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSWDKNCPTTKTLKLNKL 727

Query: 119 ----------SHFLINHNHERLREL--------KL-KPDFTDICSMKLQAINNVEYI--S 157
                     S  L       LREL        KL +  F  +  + ++    +++I  S
Sbjct: 728 DTSLRLADGISLLLKGAKDLHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNS 787

Query: 158 QSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHL 217
              I    +  +   +F  +++    +EV + ++L+   S S+  + K+    C  L  L
Sbjct: 788 MDPILSPCAFPVLESLFLNQLI--NLQEVCHGQLLV--GSFSYLRIVKVEY--CDGLKFL 841

Query: 218 VTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVD--IEEIVFSKLKALILCDLDSLTSF 275
            + S A+ L RL  +++  C+ M ++V   KE  D  ++ I+F++L+ L L  L  L +F
Sbjct: 842 FSMSMARGLSRLEKIEITRCKNMYKMVAQGKEDGDDAVDAILFAELRYLTLQHLPKLRNF 901

Query: 276 C 276
           C
Sbjct: 902 C 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 152/301 (50%), Gaps = 35/301 (11%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ + Q+T LRL DLRDC  L+ I PNVISSL +LE LCM N    WEVE     +SNAS
Sbjct: 432 PREIAQLTHLRLFDLRDCSKLREIPPNVISSLSKLENLCMENSFTLWEVEG----KSNAS 487

Query: 61  LDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGN-ESFMASLPVTKDWFRSR- 118
           + E   LP+LTTL+I + +  +L    L  KL R++I IG+  S+  + P TK    ++ 
Sbjct: 488 IAEFKYLPYLTTLDIQIPDAELLLTDVLFEKLIRYRIFIGDVWSWDKNCPTTKTLKLNKL 547

Query: 119 ----------SHFLINHNHERLREL--------KL-KPDFTDICSMKLQAINNVEYI--S 157
                     S  L       LREL        KL +  F  +  + ++    +++I  S
Sbjct: 548 DTSLRLADGISLLLKGAKDLHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNS 607

Query: 158 QSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHL 217
              I    +  +   +F  +++    +EV + ++L+   S S+  + K+    C  L  L
Sbjct: 608 MDPILSPCAFPVLESLFLNQLI--NLQEVCHGQLLV--GSFSYLRIVKVEY--CDGLKFL 661

Query: 218 VTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVD--IEEIVFSKLKALILCDLDSLTSF 275
            + S A+ L RL  +++  C+ M ++V   KE  D  ++ I+F++L+ L L  L  L +F
Sbjct: 662 FSMSMARGLSRLEKIEITRCKNMYKMVAQGKEDGDDAVDAILFAELRYLTLQHLPKLRNF 721

Query: 276 C 276
           C
Sbjct: 722 C 722

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737422|emb|CBI26623.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 154/311 (49%), Gaps = 16/311 (5%)

Query: 1    PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
            PK +G++  LRLLDL  C  LK I PN+IS L  LEEL M     +W+V  A  ER N  
Sbjct: 1590 PKEIGELKSLRLLDLTYCRSLKKIPPNLISGLSGLEELYMRGSFQQWDVCGATKERRNVC 1649

Query: 61   LDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNE-SF-MASLPVTKDWFRSR 118
            L EL  LP+LT L +++ +   L + FL   L RF+I IG++ SF + +  +  D+  SR
Sbjct: 1650 LTELKSLPYLTILHVEIFSSKCLPKDFLLPTLSRFQIYIGSKLSFTIFTKKLKYDYPTSR 1709

Query: 119  SHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQS-RITLTVSLFIRRGIFNGR 177
            +  L   +      +K   + T+   ++L A+  + Y+ +     L++       I +  
Sbjct: 1710 TLELKGIDSPIPVGVKELFERTEDLVLQLNALPQLGYVWKGFDPHLSLHNLEVLEIQSCN 1769

Query: 178  MLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQV-YG 236
             LR  F+         PS ++S   L     + C EL  +V     +    L  +QV   
Sbjct: 1770 RLRNLFQ---------PSMALSLSKLEYFKILDCTELEQIVADED-ELEHELSNIQVEKP 1819

Query: 237  CRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP 296
              A+ ++ +   +GVD  +IV  +L +L L  L  L SFC  N  F++PSLE + +  CP
Sbjct: 1820 FLALPKLKVLKVKGVD--KIVLPQLSSLKLKSLPVLESFCMGNIPFEWPSLEKMVLKKCP 1877

Query: 297  KMKTFTSGESN 307
            KM TF+   S+
Sbjct: 1878 KMTTFSVAASD 1888

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 156/303 (51%), Gaps = 32/303 (10%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ +G+VT+L+LLDL +C  L+VI+PN +SSL RLE+L MGN  V+WE E ++++R+NA 
Sbjct: 603 PREIGKVTRLQLLDLSNCERLEVISPNALSSLTRLEDLYMGNSFVKWETEGSSSQRNNAC 662

Query: 61  LDELMLLPWLTTLEIDVKN-DSILQEGFLA-RKLERFKISIGNESFMASLPVTKDWFRSR 118
           L EL  L  L+TL + + + D++ ++ F + + LERF+I IG+    +    T    + +
Sbjct: 663 LSELKHLSNLSTLHMQITDADNMPKDLFSSFQNLERFRIFIGDGWDWSVKDATSRTLKLK 722

Query: 119 SHFLI------NHNHERLRELKLK--------------PDFTDICSMKLQAINNVEYISQ 158
            + +I      N   +   EL L+                F  +  + +Q    V+YI  
Sbjct: 723 LNTVIQLEEGVNTLLKITEELHLQELNGVKSILNDLDGEGFPQLRHLHVQNCPGVQYIIN 782

Query: 159 S-RITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHL 217
           S R+    +      +F   +  +  E++ + +++    + S  NL  L    C  L +L
Sbjct: 783 SIRMGPRTAFLNLDSLFLENL--DNLEKICHGQLM----AESLGNLRILKVESCHRLKNL 836

Query: 218 VTSSTAKTLVRLVTVQVYGCRAMTEVVINDKE--GVDIEEIV-FSKLKALILCDLDSLTS 274
            + S A+ LVRL  + +  C+ M EVV  + E    D E I+ F++L+ L L  L   TS
Sbjct: 837 FSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPIIEFTQLRRLTLQCLPQFTS 896

Query: 275 FCS 277
           F S
Sbjct: 897 FHS 899

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777048|emb|CAN65562.1| hypothetical protein VITISV_009359 [Vitis vinifera]

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 48/308 (15%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ + Q+T LRL DL+D   LKVI P+VISSL RLE+LCM N   +WE E     +SNA 
Sbjct: 611 PREIAQLTHLRLFDLKDSSKLKVIPPDVISSLFRLEDLCMENSFTQWEGEG----KSNAC 666

Query: 61  LDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGN-----ESFMASLPVTKDWF 115
           L EL  L  LT+L+I + +  +L +  +   L R++I +GN     E F A+  +  + F
Sbjct: 667 LAELKHLSHLTSLDIQIPDAKLLPKDIVFENLVRYRIFVGNVWSWKEIFKANSTLKLNKF 726

Query: 116 RSRSHFL--INHNHERLRELKLKP--DFTDICS-------MKLQAIN-----NVEYISQS 159
            +  H +  I+   +R  +L L+     T++ S       +KL+ +N      ++YI  S
Sbjct: 727 DTSLHLVDGISKLLKRTEDLHLRELCGGTNVLSKLNREGFLKLKHLNVESSPEIQYIVNS 786

Query: 160 RITLTVSLFIRRGIFNGRMLRET--------FEEVGNDKILLPSSSVSFRNLTKLVAVGC 211
            + LT S     G F    + ET         +EV + +   P+   SF  L K+    C
Sbjct: 787 -MDLTSS----HGAFP---VMETLSLNQLINLQEVCHGQ--FPAG--SFGCLRKVEVEDC 834

Query: 212 KELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEI---VFSKLKALILCD 268
             L  L + S A+ L RL  ++V  C++M E+V   ++ +  + +   +F +L++L L D
Sbjct: 835 DGLKCLFSLSVARGLSRLEEIKVTRCKSMVEIVSQGRKEIKEDAVNVPLFPELRSLTLED 894

Query: 269 LDSLTSFC 276
           L  L++FC
Sbjct: 895 LPKLSNFC 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 146/306 (47%), Gaps = 41/306 (13%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ + Q+TKL+ LDL  C  LKVI   +IS L +LEEL M N    W+V+  N +R NAS
Sbjct: 611 PREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNNSFDLWDVQGINNQR-NAS 669

Query: 61  LDELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSH 120
           L EL  LP+LTTLEI V +  IL +    RKLERF+I IG+         T D+  SR+ 
Sbjct: 670 LAELECLPYLTTLEICVLDAKILPKDLFFRKLERFRIFIGD-----VWSGTGDYGTSRTL 724

Query: 121 FL------INHNHERLRELKLKPD--------------------FTDICSMKLQAINNVE 154
            L      I+  H     L++  D                    FT +  + +Q    ++
Sbjct: 725 KLKLNTSSIHLEHGLSILLEVTEDLYLAEVKGIKSVLYDLDSQGFTQLKHLDVQNDPEIQ 784

Query: 155 Y-ISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKE 213
           Y I  +R +   +  I   ++   ++  + E++   K+    ++ SF  L  L  V C  
Sbjct: 785 YIIDPNRRSPCNAFPILESLYLDNLM--SLEKICCGKL----TTGSFSKLRSLTVVKCDR 838

Query: 214 LIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGV--DIEEIVFSKLKALILCDLDS 271
           L +L + S  + L++L  ++V  C  + E+V    E    D E +  ++L +L L  L  
Sbjct: 839 LKNLFSFSMMRCLLQLQQMKVVDCANLEEIVACGSEDTDNDYEAVKLTQLCSLTLKRLPM 898

Query: 272 LTSFCS 277
             SFCS
Sbjct: 899 FKSFCS 904

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 156/302 (51%), Gaps = 31/302 (10%)

Query: 1   PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
           P+ +G++T+L LLDL +C  L+VI+PNV+SSL RLEEL MGN  V+WE E ++++R+NA 
Sbjct: 603 PREIGKLTRLLLLDLSNCERLEVISPNVLSSLTRLEELYMGNSFVKWETEGSSSQRNNAC 662

Query: 61  LDELMLLPWLTTLEIDVKN-DSILQE-GFLARKLERFKISIGNESFMASLPVTKDWFRSR 118
           L EL  L  L TL + + + D++L++  FL +KLERF+I IG+    +    T    + +
Sbjct: 663 LSELKRLSNLITLHMQITDADNMLKDLSFLFQKLERFRIFIGDGWDWSVKYATSRTLKLK 722

Query: 119 SHFLIN---------HNHERLRELKLK-----------PDFTDICSMKLQAINNVEYISQ 158
            + +I           + E L   +LK            DF  +  + +Q    V+YI  
Sbjct: 723 LNTVIQLEEWVNTLLKSTEELHLQELKGVKSILNDLDGEDFPRLKHLHVQNCPGVQYIIN 782

Query: 159 S-RITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHL 217
           S R+    +      +F   +  +  E++ + +++    + S   L  L    C  L +L
Sbjct: 783 SIRMGPRTAFLNLDSLFLENL--DNLEKICHGQLM----AESLGKLRILKVESCHRLKNL 836

Query: 218 VTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEG--VDIEEIVFSKLKALILCDLDSLTSF 275
            + S A+ LVRL  + +  C+ M EVV  + E    D E I F++L+ L L  L   TSF
Sbjct: 837 FSVSMARRLVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFAQLRRLTLQCLPQFTSF 896

Query: 276 CS 277
            S
Sbjct: 897 HS 898

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.353	0.121	0.263	2e-07
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.327	0.110	0.317	9.8e-06
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.745	0.195	0.268	0.00039

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 30/114 (26%), Positives = 54/114 (47%)

Query:   196 SSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEE 255
             +SVS   L  +  +       L   S  + L +L  ++++ CR + E+ I++ E   +E+
Sbjct:   764 NSVSQDCLRNIRCINISHCNKLKNVSWVQKLPKLEVIELFDCREIEEL-ISEHESPSVED 822

Query:   256 -IVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTSGESNT 308
               +F  LK L   DL  L S   + ++F+   +E L +  CP++K     E  T
Sbjct:   823 PTLFPSLKTLRTRDLPELNSILPSRFSFQ--KVETLVITNCPRVKKLPFQERRT 874

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
 Identities = 34/107 (31%), Positives = 48/107 (44%)

Query:   205 KLVAV-GCKELIHLVTSST-AKTLVRLVTVQVYGCRAMTEVVINDKEGVDI-EEIVFSKL 261
             KL+ V GC++L  L +    A TL  L  ++V  C  + E+       VD   E +  KL
Sbjct:   798 KLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNFSSVPVDFCAESLLPKL 857

Query:   262 KALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTSGESNT 308
               + L  L  L S C+     +  SLE+LEV  C  +K       NT
Sbjct:   858 TVIKLKYLPQLRSLCNDRVVLE--SLEHLEVESCESLKNLPFVPGNT 902

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00039, P = 0.00039
 Identities = 67/250 (26%), Positives = 109/250 (43%)

Query:     1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNAS 60
             P ++G  T L  LDL DC  L V  P+ I +L  L++L +  CS    V+  ++  +  S
Sbjct:   697 PSSIGNATNLLELDLIDCSSL-VKLPSSIGNLTNLKKLFLNRCSSL--VKLPSSFGNVTS 753

Query:    61 LDELMLLPWLTTLEI--DVKNDSILQEGFL--ARKLERFKISIGNESFMASLPVTK--DW 114
             L EL L    + LEI   + N   L++ +      L +   SIGN + +  L +      
Sbjct:   754 LKELNLSGCSSLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSL 813

Query:   115 FRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLF-IRRGI 173
                 S  L   N  RL +L L    + +   KL +I NV  +    ++   SL  +   I
Sbjct:   814 MECPSSML---NLTRLEDLNLSGCLSLV---KLPSIGNVINLQSLYLSDCSSLMELPFTI 867

Query:   174 FNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQ 233
              N   L   + +  ++ + LPSS  +  NL  L   GC  L  L   S  +  + L ++ 
Sbjct:   868 ENATNLDTLYLDGCSNLLELPSSIWNITNLQSLYLNGCSSLKEL--PSLVENAINLQSLS 925

Query:   234 VYGCRAMTEV 243
             +  C ++ E+
Sbjct:   926 LMKCSSLVEL 935


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      311       311   0.00080  116 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  209 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.79u 0.16s 25.95t   Elapsed:  00:00:02
  Total cpu time:  25.79u 0.16s 25.95t   Elapsed:  00:00:02
  Start:  Tue May 21 04:09:48 2013   End:  Tue May 21 04:09:50 2013

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050016 cc-nbs-lrr resistance protein (1144 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.56
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.35
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.28
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.21
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.02
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.62
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.59
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.58
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.47
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.21
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.15
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.14
PLN03150	623	hypothetical protein; Provisional	98.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.84
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.74
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.65
KOG4341	483	consensus F-box protein containing LRR [General fu	97.65
PLN03150	623	hypothetical protein; Provisional	97.62
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.55
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.43
KOG4341	483	consensus F-box protein containing LRR [General fu	97.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.86
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.62
PRK15386	426	type III secretion protein GogB; Provisional	95.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.4
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.24
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.57
smart00370	26	LRR Leucine-rich repeats, outliers.	94.15
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.15
PRK15386	426	type III secretion protein GogB; Provisional	94.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.61
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	89.89
KOG1947	482	consensus Leucine rich repeat proteins, some prote	88.04
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	84.31

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=7.1e-16  Score=155.76  Aligned_cols=83  Identities=19%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I   82 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~   82 (311)
                      ++++++|++|++++|.....+|..+ +++++|++|++++|.+.+.+  |         ..++.+++|+.|++++|... .
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~--p---------~~l~~l~~L~~L~L~~n~l~~~  227 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQI--P---------RELGQMKSLKWIYLGYNNLSGE  227 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcC--C---------hHHcCcCCccEEECcCCccCCc
Confidence            4444555555555432222444443 45555555555554444333  3         44445555555555444422 3


Q ss_pred             cccccc-cccCcEEEEE
Q 039375           83 LQEGFL-ARKLERFKIS   98 (311)
Q Consensus        83 lp~~~~-l~~L~~l~~~   98 (311)
                      +|..+. +++|+.+++.
T Consensus       228 ~p~~l~~l~~L~~L~L~  244 (968)
T PLN00113        228 IPYEIGGLTSLNHLDLV  244 (968)
T ss_pred             CChhHhcCCCCCEEECc
Confidence            444432 4455555443

>PLN03210 Resistant to P

Probab=99.65  E-value=1.3e-15  Score=155.22  Aligned_cols=103  Identities=22%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccC------------Cccccccccccccc
Q 039375          194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVIND------------KEGVDIEEIVFSKL  261 (311)
Q Consensus       194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~------------~~~~~~~~~~~~~L  261 (311)
                      |.++..+++|+.|++++|.+++.+ + ... .+++|+.|++++|..+..+....            -...|.....+++|
T Consensus       795 P~si~~L~~L~~L~Ls~C~~L~~L-P-~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L  871 (1153)
T PLN03210        795 PSSIQNLHKLEHLEIENCINLETL-P-TGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL  871 (1153)
T ss_pred             ChhhhCCCCCCEEECCCCCCcCee-C-CCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCC
Confidence            445667888999999998777773 2 222 68888999999887765443211            01123445678899


Q ss_pred             ceeecccccccceeccCCceecCCCccEEEEecCCCCeec
Q 039375          262 KALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTF  301 (311)
Q Consensus       262 ~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~  301 (311)
                      +.|.+.+|++++.+..  ....+++|+.+.+.+|++|+..
T Consensus       872 ~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        872 SFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CEEECCCCCCcCccCc--ccccccCCCeeecCCCcccccc
Confidence            9999999999999844  5567899999999999999844

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.64  E-value=8.6e-16  Score=155.17  Aligned_cols=86  Identities=19%  Similarity=0.228  Sum_probs=67.0

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++++++|++|++++|.....+|.++ +++.+|++|++++|.+.+.+  |         .+++.+++|++|+++.|..
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~--p---------~~l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEI--P---------YEIGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcC--C---------hhHhcCCCCCEEECcCcee
Confidence            4567889999999999865445778776 89999999999998887666  6         7788888888888887764


Q ss_pred             -cccccccc-cccCcEEEEE
Q 039375           81 -SILQEGFL-ARKLERFKIS   98 (311)
Q Consensus        81 -~~lp~~~~-l~~L~~l~~~   98 (311)
                       +.+|..+. +++|+.+.++
T Consensus       249 ~~~~p~~l~~l~~L~~L~L~  268 (968)
T PLN00113        249 TGPIPSSLGNLKNLQYLFLY  268 (968)
T ss_pred             ccccChhHhCCCCCCEEECc
Confidence             35666664 7778877775

>PLN03210 Resistant to P

Probab=99.56  E-value=4.2e-14  Score=144.28  Aligned_cols=94  Identities=21%  Similarity=0.372  Sum_probs=70.2

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceecc-
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCS-  277 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~-  277 (311)
                      .+++|+.|++++|..+..  .+..++++++|+.|+|++|..++.++.        . ..+++|++|.+++|..++.+.. 
T Consensus       776 ~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~--------~-~~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPT--------G-INLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             ccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCC--------C-CCccccCEEECCCCCcccccccc
Confidence            356899999999966665  356788999999999999998887732        1 2477888888888866654421 


Q ss_pred             -----------------CCceecCCCccEEEEecCCCCeecCC
Q 039375          278 -----------------ANYTFKFPSLEYLEVIGCPKMKTFTS  303 (311)
Q Consensus       278 -----------------~~~~~~~~~L~~L~i~~c~~l~~~~~  303 (311)
                                       +.....+++|++|++.+|++|+.++.
T Consensus       845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence                             01234578999999999999997654

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.45  E-value=2.5e-14  Score=129.14  Aligned_cols=235  Identities=17%  Similarity=0.144  Sum_probs=153.8

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .|..|.+|..|.|+. |.++.+|..++++|++|+.|++..|.|. .++|          ..+..|++|+.|.+..|++..
T Consensus       192 ~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~----------ltFqgL~Sl~nlklqrN~I~k  259 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIR-IVEG----------LTFQGLPSLQNLKLQRNDISK  259 (873)
T ss_pred             cccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccccee-eehh----------hhhcCchhhhhhhhhhcCccc
Confidence            355677788888888 7888888877788888888888888886 6654          566778888888888888888


Q ss_pred             cccccc--cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceecccccc
Q 039375           83 LQEGFL--ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQS  159 (311)
Q Consensus        83 lp~~~~--l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~~  159 (311)
                      +.++++  +.+++++++..+...-..     .+|     -    -+++.++.|+++.+ ++.+..+.        +   +
T Consensus       260 L~DG~Fy~l~kme~l~L~~N~l~~vn-----~g~-----l----fgLt~L~~L~lS~NaI~rih~d~--------W---s  314 (873)
T KOG4194|consen  260 LDDGAFYGLEKMEHLNLETNRLQAVN-----EGW-----L----FGLTSLEQLDLSYNAIQRIHIDS--------W---S  314 (873)
T ss_pred             ccCcceeeecccceeecccchhhhhh-----ccc-----c----cccchhhhhccchhhhheeecch--------h---h
Confidence            888774  788888877643211110     022     2    45566666665543 34433321        1   3


Q ss_pred             cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      ..+.|+.|+++. .+...+                +..+..+..|+.|.++.+ +++. .....+..+.+|+.|+++++.
T Consensus       315 ftqkL~~LdLs~N~i~~l~----------------~~sf~~L~~Le~LnLs~N-si~~-l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLD----------------EGSFRVLSQLEELNLSHN-SIDH-LAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             hcccceeEeccccccccCC----------------hhHHHHHHHhhhhccccc-chHH-HHhhHHHHhhhhhhhcCcCCe
Confidence            345677777765 111111                112445778888888888 7777 344567778899999998776


Q ss_pred             CceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCe
Q 039375          239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMK  299 (311)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~  299 (311)
                      ...-|..     .......++.|+.|.+.+. +++++... .+.+++.||+|++.+.+-..
T Consensus       377 ls~~IED-----aa~~f~gl~~LrkL~l~gN-qlk~I~kr-Afsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  377 LSWCIED-----AAVAFNGLPSLRKLRLTGN-QLKSIPKR-AFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             EEEEEec-----chhhhccchhhhheeecCc-eeeecchh-hhccCcccceecCCCCccee
Confidence            5444422     1222345888888888875 47777533 45678888888888766544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.35  E-value=6e-13  Score=130.42  Aligned_cols=259  Identities=21%  Similarity=0.267  Sum_probs=152.8

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc-cc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND-SI   82 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~-~~   82 (311)
                      |..++.|++|||++|..+.++|.+| ++|.+||+|+++++.+. .+  |         .++++|+.|.+|++..++. ..
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~L--P---------~~l~~Lk~L~~Lnl~~~~~l~~  633 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HL--P---------SGLGNLKKLIYLNLEVTGRLES  633 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-cc--c---------hHHHHHHhhheecccccccccc
Confidence            5679999999999999999999998 99999999999999998 88  8         9999999999999987763 44


Q ss_pred             cccccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-----------------eeeEEc
Q 039375           83 LQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-----------------FTDICS  144 (311)
Q Consensus        83 lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------------l~~L~l  144 (311)
                      +|.... +++|+++.+...........  ..++          .++.+|+.+.+...                 .+.+.+
T Consensus       634 ~~~i~~~L~~Lr~L~l~~s~~~~~~~~--l~el----------~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  634 IPGILLELQSLRVLRLPRSALSNDKLL--LKEL----------ENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             ccchhhhcccccEEEeeccccccchhh--HHhh----------hcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence            444444 89999998874331100000  0001          11122222111110                 111111


Q ss_pred             cccCCcceecccccccccccceEEEec-eEecccccccCcccccccEEeCCCCcc-cccCccEEEEecCCCceeecCccc
Q 039375          145 MKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSV-SFRNLTKLVAVGCKELIHLVTSST  222 (311)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~  222 (311)
                      ..+...+.. .. ...+.+|+.|.+.+ .+.+...  .         +....... .|+++..+.+.+|...+++.   +
T Consensus       702 ~~~~~~~~~-~~-~~~l~~L~~L~i~~~~~~e~~~--~---------~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~  765 (889)
T KOG4658|consen  702 EGCSKRTLI-SS-LGSLGNLEELSILDCGISEIVI--E---------WEESLIVLLCFPNLSKVSILNCHMLRDLT---W  765 (889)
T ss_pred             cccccceee-cc-cccccCcceEEEEcCCCchhhc--c---------cccccchhhhHHHHHHHHhhccccccccc---h
Confidence            111101000 00 04566677777655 1110000  0         00000011 25566666667776666532   3


Q ss_pred             cccCCCCCEEeeccCcCceEEeccCCccc--cccccccccccee-ecccccccceeccCCceecCCCccEEEEecCCCCe
Q 039375          223 AKTLVRLVTVQVYGCRAMTEVVINDKEGV--DIEEIVFSKLKAL-ILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMK  299 (311)
Q Consensus       223 l~~l~~L~~L~l~~c~~l~~~~~~~~~~~--~~~~~~~~~L~~L-~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~  299 (311)
                      ..-.++|+.|.+.+|..+++++.......  ......|..+..+ .+.+.+.++++.+  ....+++|+.+.+..||++.
T Consensus       766 ~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~  843 (889)
T KOG4658|consen  766 LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKLG  843 (889)
T ss_pred             hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe--cccCccchhheehhcCcccc
Confidence            34456888888888887777766332211  1113456666666 5777777777755  44566678888888888888


Q ss_pred             ecCCCC
Q 039375          300 TFTSGE  305 (311)
Q Consensus       300 ~~~~~~  305 (311)
                      .+|...
T Consensus       844 ~~P~~~  849 (889)
T KOG4658|consen  844 KLPLLS  849 (889)
T ss_pred             cCcccc
Confidence            777553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.28  E-value=3.7e-13  Score=121.70  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccc---ccee
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDS---LTSF  275 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~---l~~~  275 (311)
                      ..++|+.|+++.+ +++. ..++.+..+..|+.|+++++. +..+..+       ....+.+|+.|++++..-   +++-
T Consensus       315 ftqkL~~LdLs~N-~i~~-l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~-------af~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  315 FTQKLKELDLSSN-RITR-LDEGSFRVLSQLEELNLSHNS-IDHLAEG-------AFVGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             hcccceeEecccc-cccc-CChhHHHHHHHhhhhcccccc-hHHHHhh-------HHHHhhhhhhhcCcCCeEEEEEecc
Confidence            3568999999999 8888 667788889999999998764 3333111       123467777777776421   1221


Q ss_pred             ccCCceecCCCccEEEEecCCCCeecC
Q 039375          276 CSANYTFKFPSLEYLEVIGCPKMKTFT  302 (311)
Q Consensus       276 ~~~~~~~~~~~L~~L~i~~c~~l~~~~  302 (311)
                        ...+.++++|..|.+.+ .++|.++
T Consensus       385 --a~~f~gl~~LrkL~l~g-Nqlk~I~  408 (873)
T KOG4194|consen  385 --AVAFNGLPSLRKLRLTG-NQLKSIP  408 (873)
T ss_pred             --hhhhccchhhhheeecC-ceeeecc
Confidence              12334689999998877 4555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.21  E-value=5.3e-13  Score=121.73  Aligned_cols=85  Identities=20%  Similarity=0.261  Sum_probs=53.0

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..|..|.-|.+|||+. +.++++|.++ ..-+++-+|++++|.|. .+  |+        .-+-+|..|-.|++++|..
T Consensus        96 P~diF~l~dLt~lDLSh-NqL~EvP~~L-E~AKn~iVLNLS~N~Ie-tI--Pn--------~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSH-NQLREVPTNL-EYAKNSIVLNLSYNNIE-TI--PN--------SLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             Cchhcccccceeeecch-hhhhhcchhh-hhhcCcEEEEcccCccc-cC--Cc--------hHHHhhHhHhhhccccchh
Confidence            45566666666677766 6666666665 66666666777766665 55  30        1123455666666666666


Q ss_pred             cccccccc-cccCcEEEEE
Q 039375           81 SILQEGFL-ARKLERFKIS   98 (311)
Q Consensus        81 ~~lp~~~~-l~~L~~l~~~   98 (311)
                      ..+|..+. +.+|+.+.++
T Consensus       163 e~LPPQ~RRL~~LqtL~Ls  181 (1255)
T KOG0444|consen  163 EMLPPQIRRLSMLQTLKLS  181 (1255)
T ss_pred             hhcCHHHHHHhhhhhhhcC
Confidence            66666664 6666666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.12  E-value=3.8e-12  Score=116.28  Aligned_cols=66  Identities=21%  Similarity=0.256  Sum_probs=46.9

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      |..+..-+++-+|+|++ +.|..||..++-+|.-|-+|++++|.+. .+  |         .++..|.+|++|.+++|.
T Consensus       119 P~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe-~L--P---------PQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  119 PTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLE-ML--P---------PQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             chhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhh-hc--C---------HHHHHHhhhhhhhcCCCh
Confidence            44555666777777777 7777777777777777777777777765 55  6         667777777777776655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.02  E-value=2.8e-12  Score=111.35  Aligned_cols=89  Identities=20%  Similarity=0.087  Sum_probs=59.9

Q ss_pred             CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375          194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT  273 (311)
Q Consensus       194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~  273 (311)
                      |..++.+..|+.|+++.+ ++..+  |..+-.+..++.+-.+ ++.++.+..       .+...|.+|..|++.+. .+.
T Consensus       451 P~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lEtllas-~nqi~~vd~-------~~l~nm~nL~tLDL~nN-dlq  518 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFN-RFRML--PECLYELQTLETLLAS-NNQIGSVDP-------SGLKNMRNLTTLDLQNN-DLQ  518 (565)
T ss_pred             chhhhhhhhhheeccccc-ccccc--hHHHhhHHHHHHHHhc-cccccccCh-------HHhhhhhhcceeccCCC-chh
Confidence            666777888999999998 77763  4555445555555444 344444421       22456777888887764 577


Q ss_pred             eeccCCceecCCCccEEEEecCC
Q 039375          274 SFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       274 ~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .+++  ..+.|.+|++|.+.+.|
T Consensus       519 ~IPp--~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  519 QIPP--ILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hCCh--hhccccceeEEEecCCc
Confidence            7744  67889999999988864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.01  E-value=8e-12  Score=96.78  Aligned_cols=81  Identities=30%  Similarity=0.449  Sum_probs=73.3

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      +.++.+++.|-|+. ++++.+|++| ..|.+||.|++..|.+. ++  |         .++..++.|+.|++..|....+
T Consensus        29 Lf~~s~ITrLtLSH-NKl~~vppni-a~l~nlevln~~nnqie-~l--p---------~~issl~klr~lnvgmnrl~~l   94 (264)
T KOG0617|consen   29 LFNMSNITRLTLSH-NKLTVVPPNI-AELKNLEVLNLSNNQIE-EL--P---------TSISSLPKLRILNVGMNRLNIL   94 (264)
T ss_pred             ccchhhhhhhhccc-CceeecCCcH-HHhhhhhhhhcccchhh-hc--C---------hhhhhchhhhheecchhhhhcC
Confidence            45677888899999 8999999998 99999999999999998 88  8         9999999999999999999999


Q ss_pred             ccccc-cccCcEEEEE
Q 039375           84 QEGFL-ARKLERFKIS   98 (311)
Q Consensus        84 p~~~~-l~~L~~l~~~   98 (311)
                      |++++ ++.|+.+++.
T Consensus        95 prgfgs~p~levldlt  110 (264)
T KOG0617|consen   95 PRGFGSFPALEVLDLT  110 (264)
T ss_pred             ccccCCCchhhhhhcc
Confidence            99997 8888888775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.89  E-value=4.8e-11  Score=113.31  Aligned_cols=77  Identities=13%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      .+|++++++. +.+..+|+.+ +.+.+|+.+...+|.+. .+  |         .++...++|+.|.+..|..+.+|...
T Consensus       241 ~nl~~~dis~-n~l~~lp~wi-~~~~nle~l~~n~N~l~-~l--p---------~ri~~~~~L~~l~~~~nel~yip~~l  306 (1081)
T KOG0618|consen  241 LNLQYLDISH-NNLSNLPEWI-GACANLEALNANHNRLV-AL--P---------LRISRITSLVSLSAAYNELEYIPPFL  306 (1081)
T ss_pred             ccceeeecch-hhhhcchHHH-HhcccceEecccchhHH-hh--H---------HHHhhhhhHHHHHhhhhhhhhCCCcc
Confidence            4678888888 7778888554 88888888888887764 44  4         45545555555555555554444444


Q ss_pred             c-cccCcEEEEE
Q 039375           88 L-ARKLERFKIS   98 (311)
Q Consensus        88 ~-l~~L~~l~~~   98 (311)
                      . ++.|+.+++.
T Consensus       307 e~~~sL~tLdL~  318 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQ  318 (1081)
T ss_pred             cccceeeeeeeh
Confidence            3 4444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.87  E-value=1.3e-08  Score=98.52  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=46.7

Q ss_pred             cCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCc
Q 039375          201 RNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANY  280 (311)
Q Consensus       201 ~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~  280 (311)
                      .+|+.|++++| +++.+ + .   ..++|+.|++++|. +..+.           ..+..|+.|.+.++ .++.++  ..
T Consensus       382 ~~L~~LdLs~N-~Lt~L-P-~---l~s~L~~LdLS~N~-LssIP-----------~l~~~L~~L~Ls~N-qLt~LP--~s  440 (788)
T PRK15387        382 SGLKELIVSGN-RLTSL-P-V---LPSELKELMVSGNR-LTSLP-----------MLPSGLLSLSVYRN-QLTRLP--ES  440 (788)
T ss_pred             cccceEEecCC-cccCC-C-C---cccCCCEEEccCCc-CCCCC-----------cchhhhhhhhhccC-cccccC--hH
Confidence            46788888887 66652 2 1   13578888888765 33331           12345677777764 366663  24


Q ss_pred             eecCCCccEEEEecCC
Q 039375          281 TFKFPSLEYLEVIGCP  296 (311)
Q Consensus       281 ~~~~~~L~~L~i~~c~  296 (311)
                      ...+++|+.|++.+++
T Consensus       441 l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        441 LIHLSSETTVNLEGNP  456 (788)
T ss_pred             HhhccCCCeEECCCCC
Confidence            5567788888887763

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.85  E-value=3.1e-11  Score=105.00  Aligned_cols=83  Identities=25%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |.+++.+.+++.|+++. +++.++|+++ +.+.+|..|+.++|... ++  |         ++++.+..|..++..+|.+
T Consensus        84 p~aig~l~~l~~l~vs~-n~ls~lp~~i-~s~~~l~~l~~s~n~~~-el--~---------~~i~~~~~l~dl~~~~N~i  149 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSH-NKLSELPEQI-GSLISLVKLDCSSNELK-EL--P---------DSIGRLLDLEDLDATNNQI  149 (565)
T ss_pred             CHHHHHHHHHHHhhccc-chHhhccHHH-hhhhhhhhhhcccccee-ec--C---------chHHHHhhhhhhhcccccc
Confidence            45667777777777777 6777777776 77777777777777765 55  5         6666666666666666666


Q ss_pred             cccccccc-cccCcEEEE
Q 039375           81 SILQEGFL-ARKLERFKI   97 (311)
Q Consensus        81 ~~lp~~~~-l~~L~~l~~   97 (311)
                      ..+|..+. +.+|..+.+
T Consensus       150 ~slp~~~~~~~~l~~l~~  167 (565)
T KOG0472|consen  150 SSLPEDMVNLSKLSKLDL  167 (565)
T ss_pred             ccCchHHHHHHHHHHhhc
Confidence            66666553 444444433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=6.1e-09  Score=102.60  Aligned_cols=259  Identities=19%  Similarity=0.224  Sum_probs=132.5

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |.+|++|.|||||++++ +.++++|.++ ++|.+|++|++..+.....+  |         .-...|++|++|.+.....
T Consensus       588 P~~I~~Li~LryL~L~~-t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~~~--~---------~i~~~L~~Lr~L~l~~s~~  654 (889)
T KOG4658|consen  588 PSSIGELVHLRYLDLSD-TGISHLPSGL-GNLKKLIYLNLEVTGRLESI--P---------GILLELQSLRVLRLPRSAL  654 (889)
T ss_pred             ChHHhhhhhhhcccccC-CCccccchHH-HHHHhhheeccccccccccc--c---------chhhhcccccEEEeecccc
Confidence            77899999999999999 8999999998 99999999999988755233  3         4444589999999965431


Q ss_pred             ---cccccc-cccccCcEEEEEecCcccccccccccccccccccccc-c--ccccccccccccCceeeEEccccCCccee
Q 039375           81 ---SILQEG-FLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLI-N--HNHERLRELKLKPDFTDICSMKLQAINNV  153 (311)
Q Consensus        81 ---~~lp~~-~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~--~~~~~l~~l~l~~~l~~L~l~~~~~~~~~  153 (311)
                         ...-.. ..+..|+.+.+..........+-....+.+ ...+.. .  ...+..-.+.-..+++.|.+..|......
T Consensus       655 ~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~-~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~  733 (889)
T KOG4658|consen  655 SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRS-LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIV  733 (889)
T ss_pred             ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHH-HhHhhhhcccccceeecccccccCcceEEEEcCCCchhh
Confidence               111111 125555555554332200110000000000 000000 0  00000001111112566666666544222


Q ss_pred             ccc-cc---cc-ccccceEEEeceEecccccccCcccccccEEeC---CCCcccccCccEEEEecCCCceeecCcccccc
Q 039375          154 EYI-SQ---SR-ITLTVSLFIRRGIFNGRMLRETFEEVGNDKILL---PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKT  225 (311)
Q Consensus       154 ~~~-~~---~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~---~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~  225 (311)
                      ... ..   .. ++++.++.+.+                   |.+   +.|....++|+.|.+..|..+++  +....+.
T Consensus       734 ~~~~~~~~~~~~f~~l~~~~~~~-------------------~~~~r~l~~~~f~~~L~~l~l~~~~~~e~--~i~~~k~  792 (889)
T KOG4658|consen  734 IEWEESLIVLLCFPNLSKVSILN-------------------CHMLRDLTWLLFAPHLTSLSLVSCRLLED--IIPKLKA  792 (889)
T ss_pred             cccccccchhhhHHHHHHHHhhc-------------------cccccccchhhccCcccEEEEeccccccc--CCCHHHH
Confidence            100 00   00 11222222111                   222   34455678999999999966665  3444555


Q ss_pred             CCCCCEEeeccCcCceEE-eccCCcc---cccccccccccceeecccccccceeccCCceecCCCccEEEEecC-CCCee
Q 039375          226 LVRLVTVQVYGCRAMTEV-VINDKEG---VDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC-PKMKT  300 (311)
Q Consensus       226 l~~L~~L~l~~c~~l~~~-~~~~~~~---~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c-~~l~~  300 (311)
                      +..++.+.+..+. .... +.....+   .......+++|..+.+..||+++         .+|.+..+.+.+| ++++.
T Consensus       793 ~~~l~~~i~~f~~-~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~---------~~P~~~~~~i~~~~~~~~~  862 (889)
T KOG4658|consen  793 LLELKELILPFNK-LEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLG---------KLPLLSTLTIVGCEEKLKE  862 (889)
T ss_pred             hhhcccEEecccc-cccceeeecCCCCceeEecccCccchhheehhcCcccc---------cCccccccceeccccceee
Confidence            6666654444222 2111 1111100   00011234445555555555443         4678888888887 77777


Q ss_pred             cCCC
Q 039375          301 FTSG  304 (311)
Q Consensus       301 ~~~~  304 (311)
                      +|.+
T Consensus       863 ~~~~  866 (889)
T KOG4658|consen  863 YPDG  866 (889)
T ss_pred             cCCc
Confidence            7765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.62  E-value=3.6e-09  Score=100.83  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      -.+|+.|++++ +.+...|..+ ..+.+|+.|+++.|.|. .+  |         .++..+.+|+++.+.+|....+|..
T Consensus        44 ~v~L~~l~lsn-n~~~~fp~~i-t~l~~L~~ln~s~n~i~-~v--p---------~s~~~~~~l~~lnL~~n~l~~lP~~  109 (1081)
T KOG0618|consen   44 RVKLKSLDLSN-NQISSFPIQI-TLLSHLRQLNLSRNYIR-SV--P---------SSCSNMRNLQYLNLKNNRLQSLPAS  109 (1081)
T ss_pred             eeeeEEeeccc-cccccCCchh-hhHHHHhhcccchhhHh-hC--c---------hhhhhhhcchhheeccchhhcCchh
Confidence            44588888888 7888888887 88888888888888886 66  6         7778888888888888888888877


Q ss_pred             cc-cccCcEEEEEec
Q 039375           87 FL-ARKLERFKISIG  100 (311)
Q Consensus        87 ~~-l~~L~~l~~~~~  100 (311)
                      +. +++|++++++.+
T Consensus       110 ~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen  110 ISELKNLQYLDLSFN  124 (1081)
T ss_pred             HHhhhcccccccchh
Confidence            74 788888887643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.62  E-value=6.9e-08  Score=93.83  Aligned_cols=71  Identities=15%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      +|+.|++++ +.++.+|..+ .  .+|++|++++|.+. .+  |         ..+.  .+|+.|++++|.+..+|..+.
T Consensus       200 ~L~~L~Ls~-N~LtsLP~~l-~--~nL~~L~Ls~N~Lt-sL--P---------~~l~--~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        200 QITTLILDN-NELKSLPENL-Q--GNIKTLYANSNQLT-SI--P---------ATLP--DTIQEMELSINRITELPERLP  261 (754)
T ss_pred             CCcEEEecC-CCCCcCChhh-c--cCCCEEECCCCccc-cC--C---------hhhh--ccccEEECcCCccCcCChhHh
Confidence            567777777 5667777654 2  36777777777665 45  4         2222  356667776666666665543


Q ss_pred             cccCcEEEEE
Q 039375           89 ARKLERFKIS   98 (311)
Q Consensus        89 l~~L~~l~~~   98 (311)
                       .+|+.++++
T Consensus       262 -s~L~~L~Ls  270 (754)
T PRK15370        262 -SALQSLDLF  270 (754)
T ss_pred             -CCCCEEECc
Confidence             456666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.62  E-value=3.2e-07  Score=89.08  Aligned_cols=69  Identities=17%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      .-..|++++ +.++.+|+.+ ..  +|+.|++.+|.++ .+  |         .   ..++|++|++++|.+..+|..  
T Consensus       202 ~~~~LdLs~-~~LtsLP~~l-~~--~L~~L~L~~N~Lt-~L--P---------~---lp~~Lk~LdLs~N~LtsLP~l--  260 (788)
T PRK15387        202 GNAVLNVGE-SGLTTLPDCL-PA--HITTLVIPDNNLT-SL--P---------A---LPPELRTLEVSGNQLTSLPVL--  260 (788)
T ss_pred             CCcEEEcCC-CCCCcCCcch-hc--CCCEEEccCCcCC-CC--C---------C---CCCCCcEEEecCCccCcccCc--
Confidence            356788888 5888888876 43  7888888888876 55  4         2   246888888888888888754  


Q ss_pred             cccCcEEEEE
Q 039375           89 ARKLERFKIS   98 (311)
Q Consensus        89 l~~L~~l~~~   98 (311)
                      .++|+.+++.
T Consensus       261 p~sL~~L~Ls  270 (788)
T PRK15387        261 PPGLLELSIF  270 (788)
T ss_pred             ccccceeecc
Confidence            3577777665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.59  E-value=6.1e-08  Score=63.55  Aligned_cols=60  Identities=32%  Similarity=0.447  Sum_probs=52.9

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      ++|++|++++ +.++.+|++.+..+++|++|++++|.+. .++ |         ..+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~-~---------~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLT-SIP-P---------DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSES-EEE-T---------TTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccC-ccC-H---------HHHcCCCCCCEEeCcCCc
Confidence            5799999999 6999999877799999999999999997 664 4         678999999999998765

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.58  E-value=3e-08  Score=79.14  Aligned_cols=79  Identities=29%  Similarity=0.402  Sum_probs=26.4

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHH-hccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVIS-SLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~-~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      +.+..+++.|+|++ +.|+.+.. + + .+.+|+.|++++|.+. .+            +.+..+++|+.|++++|.+..
T Consensus        15 ~~n~~~~~~L~L~~-n~I~~Ie~-L-~~~l~~L~~L~Ls~N~I~-~l------------~~l~~L~~L~~L~L~~N~I~~   78 (175)
T PF14580_consen   15 YNNPVKLRELNLRG-NQISTIEN-L-GATLDKLEVLDLSNNQIT-KL------------EGLPGLPRLKTLDLSNNRISS   78 (175)
T ss_dssp             ----------------------S----TT-TT--EEE-TTS--S---------------TT----TT--EEE--SS---S
T ss_pred             cccccccccccccc-cccccccc-h-hhhhcCCCEEECCCCCCc-cc------------cCccChhhhhhcccCCCCCCc
Confidence            34556789999999 78888754 4 6 6889999999999997 66            677789999999999999999


Q ss_pred             ccccc--ccccCcEEEEE
Q 039375           83 LQEGF--LARKLERFKIS   98 (311)
Q Consensus        83 lp~~~--~l~~L~~l~~~   98 (311)
                      ++..+  .+++|+.+.+.
T Consensus        79 i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   79 ISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             -CHHHHHH-TT--EEE-T
T ss_pred             cccchHHhCCcCCEEECc
Confidence            87655  27899999875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.55  E-value=1.1e-08  Score=79.54  Aligned_cols=84  Identities=20%  Similarity=0.387  Sum_probs=71.1

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN-   79 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~-   79 (311)
                      |+.|..|++|++|++++ +.|+++|.++ +.|++|+.|+++-|.+. .+  |         .++|.++-|+.||++.|. 
T Consensus        49 ppnia~l~nlevln~~n-nqie~lp~~i-ssl~klr~lnvgmnrl~-~l--p---------rgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   49 PPNIAELKNLEVLNLSN-NQIEELPTSI-SSLPKLRILNVGMNRLN-IL--P---------RGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             CCcHHHhhhhhhhhccc-chhhhcChhh-hhchhhhheecchhhhh-cC--c---------cccCCCchhhhhhcccccc
Confidence            66789999999999999 8999999998 99999999999988876 66  8         999999999999998776 


Q ss_pred             -ccccccccc-cccCcEEEEE
Q 039375           80 -DSILQEGFL-ARKLERFKIS   98 (311)
Q Consensus        80 -~~~lp~~~~-l~~L~~l~~~   98 (311)
                       ...+|..++ +..|+.+.++
T Consensus       115 ~e~~lpgnff~m~tlralyl~  135 (264)
T KOG0617|consen  115 NENSLPGNFFYMTTLRALYLG  135 (264)
T ss_pred             ccccCCcchhHHHHHHHHHhc
Confidence             356777654 6666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.47  E-value=4.7e-07  Score=88.08  Aligned_cols=222  Identities=13%  Similarity=0.092  Sum_probs=131.5

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      .+...|++++ ..++.+|..+ .  .+|+.|++++|.+. .+  |         ..+.  .+|+.|+++.|.+..+|..+
T Consensus       178 ~~~~~L~L~~-~~LtsLP~~I-p--~~L~~L~Ls~N~Lt-sL--P---------~~l~--~nL~~L~Ls~N~LtsLP~~l  239 (754)
T PRK15370        178 NNKTELRLKI-LGLTTIPACI-P--EQITTLILDNNELK-SL--P---------ENLQ--GNIKTLYANSNQLTSIPATL  239 (754)
T ss_pred             cCceEEEeCC-CCcCcCCccc-c--cCCcEEEecCCCCC-cC--C---------hhhc--cCCCEEECCCCccccCChhh
Confidence            4578899999 7889999876 4  48999999999988 67  5         4443  58999999999999898765


Q ss_pred             ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceE
Q 039375           88 LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSL  167 (311)
Q Consensus        88 ~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L  167 (311)
                      . .+|+.++++.+.   ...+|..  +          .  ..+         +.|.++ +..++.+..   .-.++|+.|
T Consensus       240 ~-~~L~~L~Ls~N~---L~~LP~~--l----------~--s~L---------~~L~Ls-~N~L~~LP~---~l~~sL~~L  288 (754)
T PRK15370        240 P-DTIQEMELSINR---ITELPER--L----------P--SAL---------QSLDLF-HNKISCLPE---NLPEELRYL  288 (754)
T ss_pred             h-ccccEEECcCCc---cCcCChh--H----------h--CCC---------CEEECc-CCccCcccc---ccCCCCcEE
Confidence            4 578888876332   1233311  0          0  123         333333 223332210   112367777


Q ss_pred             EEec-eEecccccccCcccccccEEeCC----CCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceE
Q 039375          168 FIRR-GIFNGRMLRETFEEVGNDKILLP----SSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTE  242 (311)
Q Consensus       168 ~l~~-~~~~~~~~~~~~~~l~~L~~~~~----~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~  242 (311)
                      ++++ .+..++.  ..+..+..|.+.+.    .+...+++|+.|++.+| .++. .+ ..+  .++|+.|++++|. +..
T Consensus       289 ~Ls~N~Lt~LP~--~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~-LP-~~l--~~sL~~L~Ls~N~-L~~  360 (754)
T PRK15370        289 SVYDNSIRTLPA--HLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTS-LP-ASL--PPELQVLDVSKNQ-ITV  360 (754)
T ss_pred             ECCCCccccCcc--cchhhHHHHHhcCCccccCCccccccceeccccCC-cccc-CC-hhh--cCcccEEECCCCC-CCc
Confidence            7765 1111111  01112333332220    01112468899999998 7776 33 222  2689999999875 333


Q ss_pred             EeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCeecC
Q 039375          243 VVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFT  302 (311)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~  302 (311)
                      +..          ...+.|++|.+.+| .+..+..  .  ...+|++|+++++ ++..+|
T Consensus       361 LP~----------~lp~~L~~LdLs~N-~Lt~LP~--~--l~~sL~~LdLs~N-~L~~LP  404 (754)
T PRK15370        361 LPE----------TLPPTITTLDVSRN-ALTNLPE--N--LPAALQIMQASRN-NLVRLP  404 (754)
T ss_pred             CCh----------hhcCCcCEEECCCC-cCCCCCH--h--HHHHHHHHhhccC-CcccCc
Confidence            311          22367999999987 4666632  1  2247888888885 444444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.35  E-value=5e-09  Score=91.20  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=62.3

Q ss_pred             ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEee-cCccccccccc
Q 039375           10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDV-KNDSILQEGFL   88 (311)
Q Consensus        10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~-~~~~~lp~~~~   88 (311)
                      -..++|.. |.|+.||++.++.+++|++|++++|.|. .+. |         +.++.|.+|..|.++. |.+..+|+...
T Consensus        69 tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~-p---------~AF~GL~~l~~Lvlyg~NkI~~l~k~~F  136 (498)
T KOG4237|consen   69 TVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNIS-FIA-P---------DAFKGLASLLSLVLYGNNKITDLPKGAF  136 (498)
T ss_pred             ceEEEecc-CCcccCChhhccchhhhceecccccchh-hcC-h---------HhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence            34578888 8999999999999999999999999998 554 7         8888888888887766 77999998764


Q ss_pred             --cccCcEEEE
Q 039375           89 --ARKLERFKI   97 (311)
Q Consensus        89 --l~~L~~l~~   97 (311)
                        +..|+.+..
T Consensus       137 ~gL~slqrLll  147 (498)
T KOG4237|consen  137 GGLSSLQRLLL  147 (498)
T ss_pred             hhHHHHHHHhc
Confidence              666666644

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.21  E-value=8.4e-08  Score=84.72  Aligned_cols=89  Identities=17%  Similarity=0.137  Sum_probs=52.1

Q ss_pred             CCCCCccEEecCCCCCCc-----ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375            5 GQVTKLRLLDLRDCFHLK-----VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~-----~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      ..+.+|++|++++| .++     .++..+ ...++|++|+++++.+.+ .  +  .........++.+++|+.|+++.+.
T Consensus        20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~-~--~--~~~~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          20 PKLLCLQVLRLEGN-TLGEEAAKALASAL-RPQPSLKELCLSLNETGR-I--P--RGLQSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             HHHhhccEEeecCC-CCcHHHHHHHHHHH-hhCCCceEEeccccccCC-c--c--hHHHHHHHHHHhcCceeEEEccCCC
Confidence            34566888888885 442     344443 666778888888876541 1  1  0011111455667888888888776


Q ss_pred             cc-ccccccc-ccc---CcEEEEEec
Q 039375           80 DS-ILQEGFL-ARK---LERFKISIG  100 (311)
Q Consensus        80 ~~-~lp~~~~-l~~---L~~l~~~~~  100 (311)
                      .. ..+..+. +.+   |+.+++..+
T Consensus        93 ~~~~~~~~~~~l~~~~~L~~L~ls~~  118 (319)
T cd00116          93 LGPDGCGVLESLLRSSSLQELKLNNN  118 (319)
T ss_pred             CChhHHHHHHHHhccCcccEEEeeCC
Confidence            54 2333332 333   888887643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.21  E-value=3.1e-07  Score=81.12  Aligned_cols=83  Identities=18%  Similarity=0.142  Sum_probs=53.5

Q ss_pred             cCCCCCccEEecCCCCCCcc-------cChhHHHhccccceEEeccccceeeeeccccccccccccccCCC---CCccEE
Q 039375            4 LGQVTKLRLLDLRDCFHLKV-------IAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLL---PWLTTL   73 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~-------lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L---~~L~~L   73 (311)
                      +...++|++|+++++ .+..       ++..+ +++++|++|++++|.+....  +         ..+..+   ++|+.|
T Consensus        47 l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~--~---------~~~~~l~~~~~L~~L  113 (319)
T cd00116          47 LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDG--C---------GVLESLLRSSSLQEL  113 (319)
T ss_pred             HhhCCCceEEecccc-ccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhH--H---------HHHHHHhccCcccEE
Confidence            445677999999884 4442       23344 77889999999998875322  2         333333   459999


Q ss_pred             EEeecCccc-----cccccc-c-ccCcEEEEEe
Q 039375           74 EIDVKNDSI-----LQEGFL-A-RKLERFKISI   99 (311)
Q Consensus        74 ~l~~~~~~~-----lp~~~~-l-~~L~~l~~~~   99 (311)
                      +++.+....     +...+. + ++|+.+++..
T Consensus       114 ~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~  146 (319)
T cd00116         114 KLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGR  146 (319)
T ss_pred             EeeCCccchHHHHHHHHHHHhCCCCceEEEcCC
Confidence            998877542     222222 4 7888888763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=2e-06  Score=52.01  Aligned_cols=39  Identities=28%  Similarity=0.496  Sum_probs=32.1

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeee
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEV   49 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~   49 (311)
                      ++|++|++++ +.|+.+|+.+ ++|++|++|++++|++. .+
T Consensus         1 ~~L~~L~l~~-N~i~~l~~~l-~~l~~L~~L~l~~N~i~-~i   39 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPPEL-SNLPNLETLNLSNNPIS-DI   39 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGGHG-TTCTTSSEEEETSSCCS-BE
T ss_pred             CcceEEEccC-CCCcccCchH-hCCCCCCEEEecCCCCC-CC
Confidence            5789999999 7889998877 99999999999999886 55

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.9e-07  Score=81.37  Aligned_cols=83  Identities=17%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             CCCCccEEecCCCCCCcccCh-hHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAP-NVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~-~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      ++++|+...|++ ..+...+. +.+..|++++.|+++.|-+. ... |       .++-...|++|+.|+++.|.....-
T Consensus       119 n~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~-~-------v~~i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  119 NLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWF-P-------VLKIAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             hHHhhhheeecC-ccccccchhhhhhhCCcceeecchhhhHH-hHH-H-------HHHHHHhcccchhcccccccccCCc
Confidence            456666666666 34444442 33356667777777666542 210 0       0123345666666666665544333


Q ss_pred             ccc---ccccCcEEEEE
Q 039375           85 EGF---LARKLERFKIS   98 (311)
Q Consensus        85 ~~~---~l~~L~~l~~~   98 (311)
                      +..   .+..|+.+.+.
T Consensus       189 ~s~~~~~l~~lK~L~l~  205 (505)
T KOG3207|consen  189 SSNTTLLLSHLKQLVLN  205 (505)
T ss_pred             cccchhhhhhhheEEec
Confidence            222   14455555444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.14  E-value=2.5e-07  Score=78.27  Aligned_cols=59  Identities=24%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .|..|||++ |.|+.+..++ .=++.++.|++++|.+. .+            .++..|++|+.||+++|....
T Consensus       285 ~LtelDLS~-N~I~~iDESv-KL~Pkir~L~lS~N~i~-~v------------~nLa~L~~L~~LDLS~N~Ls~  343 (490)
T KOG1259|consen  285 ELTELDLSG-NLITQIDESV-KLAPKLRRLILSQNRIR-TV------------QNLAELPQLQLLDLSGNLLAE  343 (490)
T ss_pred             hhhhccccc-cchhhhhhhh-hhccceeEEecccccee-ee------------hhhhhcccceEeecccchhHh
Confidence            445555665 5555555554 44555666666666554 44            445555555666655544433

>PLN03150 hypothetical protein; Provisional

Probab=98.11  E-value=3.5e-06  Score=81.20  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=39.1

Q ss_pred             ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc-cccccccc
Q 039375           10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND-SILQEGFL   88 (311)
Q Consensus        10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~-~~lp~~~~   88 (311)
                      ++.|+|+++..-..+|.++ ++|++|++|++++|.+.+.+  |         ..++.+++|+.|++++|.. +.+|..+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~i--P---------~~~~~l~~L~~LdLs~N~lsg~iP~~l~  487 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNI--P---------PSLGSITSLEVLDLSYNSFNGSIPESLG  487 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcC--C---------hHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence            4455555522222445554 55555555555555555444  4         4555555555555555553 24444443


Q ss_pred             -cccCcEEEEE
Q 039375           89 -ARKLERFKIS   98 (311)
Q Consensus        89 -l~~L~~l~~~   98 (311)
                       +++|+.++++
T Consensus       488 ~L~~L~~L~Ls  498 (623)
T PLN03150        488 QLTSLRILNLN  498 (623)
T ss_pred             cCCCCCEEECc
Confidence             5555555553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.07  E-value=3.4e-06  Score=67.42  Aligned_cols=81  Identities=27%  Similarity=0.345  Sum_probs=33.8

Q ss_pred             ccC-CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCc
Q 039375            3 ALG-QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKND   80 (311)
Q Consensus         3 ~i~-~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~   80 (311)
                      .++ .|.+|+.|++++ +.|+.++.  +..+++|++|++++|.+. .+  .         +.+ ..+++|+.|.+++|.+
T Consensus        36 ~L~~~l~~L~~L~Ls~-N~I~~l~~--l~~L~~L~~L~L~~N~I~-~i--~---------~~l~~~lp~L~~L~L~~N~I  100 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSN-NQITKLEG--LPGLPRLKTLDLSNNRIS-SI--S---------EGLDKNLPNLQELYLSNNKI  100 (175)
T ss_dssp             S--TT-TT--EEE-TT-S--S--TT------TT--EEE--SS----S---C---------HHHHHH-TT--EEE-TTS--
T ss_pred             chhhhhcCCCEEECCC-CCCccccC--ccChhhhhhcccCCCCCC-cc--c---------cchHHhCCcCCEEECcCCcC
Confidence            344 477899999999 78888875  488999999999999887 55  2         334 3578899999988887


Q ss_pred             ccccccc---ccccCcEEEEE
Q 039375           81 SILQEGF---LARKLERFKIS   98 (311)
Q Consensus        81 ~~lp~~~---~l~~L~~l~~~   98 (311)
                      ..+..-.   .+++|+.+.+.
T Consensus       101 ~~l~~l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen  101 SDLNELEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             -SCCCCGGGGG-TT--EEE-T
T ss_pred             CChHHhHHHHcCCCcceeecc
Confidence            6665422   27778877764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.96  E-value=5.9e-06  Score=75.42  Aligned_cols=176  Identities=22%  Similarity=0.257  Sum_probs=108.5

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhcc-ccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLI-RLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~-~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      +..+++++.|++.+ +.+.++|+.. +.+. +|++|++++|.+. .+  |         ..++.+++|+.|+++.|.+..
T Consensus       112 ~~~~~~l~~L~l~~-n~i~~i~~~~-~~~~~nL~~L~l~~N~i~-~l--~---------~~~~~l~~L~~L~l~~N~l~~  177 (394)
T COG4886         112 LLELTNLTSLDLDN-NNITDIPPLI-GLLKSNLKELDLSDNKIE-SL--P---------SPLRNLPNLKNLDLSFNDLSD  177 (394)
T ss_pred             hhcccceeEEecCC-cccccCcccc-ccchhhcccccccccchh-hh--h---------hhhhccccccccccCCchhhh
Confidence            34567788899988 8888888876 7774 8999999999887 55  4         678889999999999989888


Q ss_pred             ccccc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccc
Q 039375           83 LQEGF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRI  161 (311)
Q Consensus        83 lp~~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~  161 (311)
                      +|... .+++|+.+.++.+.   +..+|...            .....++++.+..+-         .+.... .. ..+
T Consensus       178 l~~~~~~~~~L~~L~ls~N~---i~~l~~~~------------~~~~~L~~l~~~~N~---------~~~~~~-~~-~~~  231 (394)
T COG4886         178 LPKLLSNLSNLNNLDLSGNK---ISDLPPEI------------ELLSALEELDLSNNS---------IIELLS-SL-SNL  231 (394)
T ss_pred             hhhhhhhhhhhhheeccCCc---cccCchhh------------hhhhhhhhhhhcCCc---------ceecch-hh-hhc
Confidence            88877 57888888776332   22222111            111223444333320         000000 00 222


Q ss_pred             cccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCc
Q 039375          162 TLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAM  240 (311)
Q Consensus       162 ~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l  240 (311)
                      .++..+.+.+ .+...                 +.....+++++.|+++++ +++++ .  .+..+.+++.|+++++...
T Consensus       232 ~~l~~l~l~~n~~~~~-----------------~~~~~~l~~l~~L~~s~n-~i~~i-~--~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         232 KNLSGLELSNNKLEDL-----------------PESIGNLSNLETLDLSNN-QISSI-S--SLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ccccccccCCceeeec-----------------cchhccccccceeccccc-ccccc-c--cccccCccCEEeccCcccc
Confidence            3333333222 11100                 223455677899999988 77774 2  2778889999999876543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.84  E-value=3.6e-05  Score=50.23  Aligned_cols=59  Identities=19%  Similarity=0.175  Sum_probs=40.3

Q ss_pred             cCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccc
Q 039375          201 RNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDL  269 (311)
Q Consensus       201 ~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~  269 (311)
                      |+|+.|++++| +++. .+...+..+++|++|++++| .+..+....       ...+++|++|.++++
T Consensus         1 p~L~~L~l~~n-~l~~-i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~-------f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTE-IPPDSFSNLPNLETLDLSNN-NLTSIPPDA-------FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESE-ECTTTTTTGTTESEEEETSS-SESEEETTT-------TTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCc-cCHHHHcCCCCCCEeEccCC-ccCccCHHH-------HcCCCCCCEEeCcCC
Confidence            46788888888 8887 45677788888888888854 445553311       245666777776665

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.74  E-value=2.9e-05  Score=46.89  Aligned_cols=41  Identities=32%  Similarity=0.353  Sum_probs=34.1

Q ss_pred             cccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375           33 IRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE   85 (311)
Q Consensus        33 ~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~   85 (311)
                      ++||+|++++|.+. .+  |         .+++.|++|+.|++++|.+..++.
T Consensus         1 ~~L~~L~l~~N~i~-~l--~---------~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DL--P---------PELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-S-SH--G---------GHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCc-cc--C---------chHhCCCCCCEEEecCCCCCCCcC
Confidence            47999999999998 77  5         669999999999999999887764

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.65  E-value=3.6e-06  Score=76.98  Aligned_cols=170  Identities=18%  Similarity=0.195  Sum_probs=110.1

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      --...|++. +.+..+|.++ ..+..|+.+.+..|.+. .+  |         +.+++|..|..|+++.|.+..+|..+.
T Consensus        76 dt~~aDlsr-NR~~elp~~~-~~f~~Le~liLy~n~~r-~i--p---------~~i~~L~~lt~l~ls~NqlS~lp~~lC  141 (722)
T KOG0532|consen   76 DTVFADLSR-NRFSELPEEA-CAFVSLESLILYHNCIR-TI--P---------EAICNLEALTFLDLSSNQLSHLPDGLC  141 (722)
T ss_pred             chhhhhccc-cccccCchHH-HHHHHHHHHHHHhccce-ec--c---------hhhhhhhHHHHhhhccchhhcCChhhh
Confidence            334578888 7889999998 99999999999999887 66  7         899999999999999999999999998


Q ss_pred             cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEE
Q 039375           89 ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLF  168 (311)
Q Consensus        89 l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  168 (311)
                      .--|+.+.++.++   ...+|..+            +....+..+..         . +..+..+.-.. ..+..|+.|.
T Consensus       142 ~lpLkvli~sNNk---l~~lp~~i------------g~~~tl~~ld~---------s-~nei~slpsql-~~l~slr~l~  195 (722)
T KOG0532|consen  142 DLPLKVLIVSNNK---LTSLPEEI------------GLLPTLAHLDV---------S-KNEIQSLPSQL-GYLTSLRDLN  195 (722)
T ss_pred             cCcceeEEEecCc---cccCCccc------------ccchhHHHhhh---------h-hhhhhhchHHh-hhHHHHHHHH
Confidence            7778888887443   22233222            22222222222         1 11121111000 2233344444


Q ss_pred             Eec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          169 IRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       169 l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      +.. ++.+.                 |.....+ .|..|+++.+ ++..+  |..+..|..|++|.+++|+.
T Consensus       196 vrRn~l~~l-----------------p~El~~L-pLi~lDfScN-kis~i--Pv~fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  196 VRRNHLEDL-----------------PEELCSL-PLIRLDFSCN-KISYL--PVDFRKMRHLQVLQLENNPL  246 (722)
T ss_pred             HhhhhhhhC-----------------CHHHhCC-ceeeeecccC-ceeec--chhhhhhhhheeeeeccCCC
Confidence            332 12222                 1122223 4889999988 88863  56678899999999997764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.65  E-value=1.3e-06  Score=77.04  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=59.4

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA  278 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~  278 (311)
                      +.+.|+.+++.+|....+........+++.|+++.+++|..+++-...   ........+..|..+.+.+||.+++-...
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~---~l~~~~c~~~~l~~lEL~n~p~i~d~~Le  420 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR---HLSSSSCSLEGLEVLELDNCPLITDATLE  420 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh---hhhhccccccccceeeecCCCCchHHHHH
Confidence            466788888888754444222334456788888888888766553110   00111134667888888888877654221


Q ss_pred             CceecCCCccEEEEecCCCC
Q 039375          279 NYTFKFPSLEYLEVIGCPKM  298 (311)
Q Consensus       279 ~~~~~~~~L~~L~i~~c~~l  298 (311)
                       ....+++||.+++.+|...
T Consensus       421 -~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  421 -HLSICRNLERIELIDCQDV  439 (483)
T ss_pred             -HHhhCcccceeeeechhhh
Confidence             2346788999888888443

>PLN03150 hypothetical protein; Provisional

Probab=97.62  E-value=7.8e-05  Score=71.99  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             CCccCCCCCccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375            1 PKALGQVTKLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      |..+++|++|++|+|++ +.+. .+|..+ +.+++|++|++++|.+.+.+  |         +.++.+++|+.|+++.|.
T Consensus       435 p~~i~~L~~L~~L~Ls~-N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~i--P---------~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        435 PNDISKLRHLQSINLSG-NSIRGNIPPSL-GSITSLEVLDLSYNSFNGSI--P---------ESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CHHHhCCCCCCEEECCC-CcccCcCChHH-hCCCCCCEEECCCCCCCCCC--c---------hHHhcCCCCCEEECcCCc
Confidence            45678899999999999 4555 888887 99999999999999998888  7         889999999999999887


Q ss_pred             c-cccccccc--cccCcEEEEE
Q 039375           80 D-SILQEGFL--ARKLERFKIS   98 (311)
Q Consensus        80 ~-~~lp~~~~--l~~L~~l~~~   98 (311)
                      . +.+|..+.  ..++..+.+.
T Consensus       502 l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        502 LSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             ccccCChHHhhccccCceEEec
Confidence            4 57887664  2344445443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=2e-05  Score=69.99  Aligned_cols=188  Identities=15%  Similarity=0.100  Sum_probs=103.1

Q ss_pred             cCCCCCccEEecCCCCCCccc--ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVI--APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~l--p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ...+++++-|||+. +-+...  =..++..|++||.|+++.|.+.-... -         .--..+++|+.|.++.++..
T Consensus       142 ~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s---------~~~~~l~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  142 SKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-S---------NTTLLLSHLKQLVLNSCGLS  210 (505)
T ss_pred             hhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCcc-c---------cchhhhhhhheEEeccCCCC
Confidence            35689999999999 666644  23566889999999999998751211 0         12236789999999888854


Q ss_pred             --cccccc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375           82 --ILQEGF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ  158 (311)
Q Consensus        82 --~lp~~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~  158 (311)
                        .+-..+ .+++|..+.+..+...++...+              +.-...+++|+++++         ..+..-.....
T Consensus       211 ~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--------------~~i~~~L~~LdLs~N---------~li~~~~~~~~  267 (505)
T KOG3207|consen  211 WKDVQWILLTFPSLEVLYLEANEIILIKATS--------------TKILQTLQELDLSNN---------NLIDFDQGYKV  267 (505)
T ss_pred             HHHHHHHHHhCCcHHHhhhhcccccceecch--------------hhhhhHHhhccccCC---------ccccccccccc
Confidence              221211 2677777776533211111000              022233444444332         11111100011


Q ss_pred             ccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeec
Q 039375          159 SRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY  235 (311)
Q Consensus       159 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~  235 (311)
                      ..++.|..|.++.  ..+++...++       +..-.-...|++|+.|++..+ ++.++.....+..+++|+.|.+.
T Consensus       268 ~~l~~L~~Lnls~--tgi~si~~~d-------~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  268 GTLPGLNQLNLSS--TGIASIAEPD-------VESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             ccccchhhhhccc--cCcchhcCCC-------ccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence            5566777777654  1111111111       000011235788888988888 66665444555667777777765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=2.8e-06  Score=71.92  Aligned_cols=57  Identities=16%  Similarity=0.279  Sum_probs=34.7

Q ss_pred             CccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEee
Q 039375            9 KLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDV   77 (311)
Q Consensus         9 ~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~   77 (311)
                      .|+||||+. ..|+ .---.+++.+++||.|.+.++.+.-.+           ...+..=.+|+.|+++.
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-----------~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-----------VNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHH-----------HHHHhccccceeecccc
Confidence            477777777 5554 222345577777888877776553222           14555556777777765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.43  E-value=4.3e-05  Score=67.23  Aligned_cols=83  Identities=19%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      |+.|++||.|+|++ +.|+.|-++.+..+..+|+|++..|.+. .+.+          .-+..+..|++|+++.|.+..+
T Consensus       270 f~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~----------~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLE-FVSS----------GMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             HhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcchHH-HHHH----------HhhhccccceeeeecCCeeEEE
Confidence            67899999999999 8999996666699999999999999986 5533          5677899999999999998887


Q ss_pred             ccccc--cccCcEEEEE
Q 039375           84 QEGFL--ARKLERFKIS   98 (311)
Q Consensus        84 p~~~~--l~~L~~l~~~   98 (311)
                      ..+.+  +..|..+.+.
T Consensus       338 ~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  338 APGAFQTLFSLSTLNLL  354 (498)
T ss_pred             ecccccccceeeeeehc
Confidence            76654  6666666664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.33  E-value=1.1e-05  Score=71.32  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             CCCCccEEecCCCCCCccc-ChhHHHhccccceEEecccc
Q 039375            6 QVTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCS   44 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~   44 (311)
                      +.+++.+|++.+|.+++.. -.++...+.+|++|++..|.
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~  201 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS  201 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc
Confidence            4566667777777766533 23343456677777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.28  E-value=0.00018  Score=65.58  Aligned_cols=84  Identities=21%  Similarity=0.272  Sum_probs=69.8

Q ss_pred             ccCCCC-CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            3 ALGQVT-KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         3 ~i~~L~-~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..+.+. +|+.|++++ +.+..+|..+ +.+++|+.|++++|++. .+  |         ...+.+++|+.|+++.|.+.
T Consensus       134 ~~~~~~~nL~~L~l~~-N~i~~l~~~~-~~l~~L~~L~l~~N~l~-~l--~---------~~~~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         134 LIGLLKSNLKELDLSD-NKIESLPSPL-RNLPNLKNLDLSFNDLS-DL--P---------KLLSNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             ccccchhhcccccccc-cchhhhhhhh-hccccccccccCCchhh-hh--h---------hhhhhhhhhhheeccCCccc
Confidence            345564 899999999 8999998776 99999999999999998 66  4         55558899999999999999


Q ss_pred             ccccccc-cccCcEEEEEec
Q 039375           82 ILQEGFL-ARKLERFKISIG  100 (311)
Q Consensus        82 ~lp~~~~-l~~L~~l~~~~~  100 (311)
                      .+|..+. ...|+.+.+..+
T Consensus       200 ~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         200 DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             cCchhhhhhhhhhhhhhcCC
Confidence            9999874 455888877633

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.26  E-value=4.7e-05  Score=69.96  Aligned_cols=82  Identities=23%  Similarity=0.413  Sum_probs=40.0

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      +.++-+.+|..||.+. +.+..+|+.+ +.|.+|+.|.++.|++. .+  |         +++..|+ |..||++.|++.
T Consensus       160 ~~ig~~~tl~~ld~s~-nei~slpsql-~~l~slr~l~vrRn~l~-~l--p---------~El~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  160 EEIGLLPTLAHLDVSK-NEIQSLPSQL-GYLTSLRDLNVRRNHLE-DL--P---------EELCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             cccccchhHHHhhhhh-hhhhhchHHh-hhHHHHHHHHHhhhhhh-hC--C---------HHHhCCc-eeeeecccCcee
Confidence            3444444444444444 3444444444 44555555555544444 33  4         4444332 455555555555


Q ss_pred             ccccccc-cccCcEEEEE
Q 039375           82 ILQEGFL-ARKLERFKIS   98 (311)
Q Consensus        82 ~lp~~~~-l~~L~~l~~~   98 (311)
                      .+|-.+. |..|+.+.+.
T Consensus       225 ~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             ecchhhhhhhhheeeeec
Confidence            5555553 5555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=2.1e-05  Score=66.80  Aligned_cols=136  Identities=16%  Similarity=0.116  Sum_probs=80.1

Q ss_pred             eeeEEccccCCcceeccccc-ccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCc-ee
Q 039375          139 FTDICSMKLQAINNVEYISQ-SRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKEL-IH  216 (311)
Q Consensus       139 l~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l-~~  216 (311)
                      +..+.+..|+++++...... +++..|..|.++.+....+....   ..          -..-++|+.|.++||.+- ..
T Consensus       236 L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---~V----------~hise~l~~LNlsG~rrnl~~  302 (419)
T KOG2120|consen  236 LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV---AV----------AHISETLTQLNLSGYRRNLQK  302 (419)
T ss_pred             ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---HH----------hhhchhhhhhhhhhhHhhhhh
Confidence            78888888988877655544 66777888887751111100000   00          011357788888887421 11


Q ss_pred             ecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          217 LVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       217 l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      -........+++|.+|++++|..+..-...+       ...|+.|+++.++.|-.+..-- -......|+|.||++.+|
T Consensus       303 sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-------~~kf~~L~~lSlsRCY~i~p~~-~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  303 SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-------FFKFNYLQHLSLSRCYDIIPET-LLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHHHHHHHhCCceeeeccccccccCchHHHH-------HHhcchheeeehhhhcCCChHH-eeeeccCcceEEEEeccc
Confidence            0111223458888888888888766532222       2468888888888885542110 013456788888888876

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.00016  Score=61.51  Aligned_cols=91  Identities=11%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA  278 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~  278 (311)
                      .||++..+.+..| -+++.........++.+-.|+++. +.+.++...+.      ...||.|..|.+.+.|-+..+-. 
T Consensus       197 ~Fpnv~sv~v~e~-PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~------Ln~f~~l~dlRv~~~Pl~d~l~~-  267 (418)
T KOG2982|consen  197 IFPNVNSVFVCEG-PLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDA------LNGFPQLVDLRVSENPLSDPLRG-  267 (418)
T ss_pred             hcccchheeeecC-cccchhhcccCCCCCcchhhhhcc-cccccHHHHHH------HcCCchhheeeccCCcccccccC-
Confidence            4788888888888 445433334455577777777763 34555543222      24688888888887775555521 


Q ss_pred             CceecCCCccEEEEecCCCCeecCCC
Q 039375          279 NYTFKFPSLEYLEVIGCPKMKTFTSG  304 (311)
Q Consensus       279 ~~~~~~~~L~~L~i~~c~~l~~~~~~  304 (311)
                            --=..|-|.+.++++++-++
T Consensus       268 ------~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  268 ------GERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             ------CcceEEEEeeccceEEecCc
Confidence                  22234455555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.12  E-value=5.1e-05  Score=73.47  Aligned_cols=79  Identities=19%  Similarity=0.210  Sum_probs=41.4

Q ss_pred             CCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            8 TKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      .+|++|+++|...+..- |..+..-|++|+.|.+.+-.+. .         +....-+.+++||..||+++.+++.+ .+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~-~---------~dF~~lc~sFpNL~sLDIS~TnI~nl-~G  190 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD-N---------DDFSQLCASFPNLRSLDISGTNISNL-SG  190 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec-c---------hhHHHHhhccCccceeecCCCCccCc-HH
Confidence            36777777773333222 3344233677777777664332 0         00114445677777777776666655 33


Q ss_pred             cc-cccCcEEEE
Q 039375           87 FL-ARKLERFKI   97 (311)
Q Consensus        87 ~~-l~~L~~l~~   97 (311)
                      +. +++|+.+.+
T Consensus       191 IS~LknLq~L~m  202 (699)
T KOG3665|consen  191 ISRLKNLQVLSM  202 (699)
T ss_pred             HhccccHHHHhc
Confidence            32 444444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.06  E-value=0.0003  Score=68.22  Aligned_cols=81  Identities=27%  Similarity=0.336  Sum_probs=53.1

Q ss_pred             CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      .++++|++||+++ +.++.+ .++ ++|++||+|.+.+-.+.          ....+..+-+|++|+.||++.......+
T Consensus       170 ~sFpNL~sLDIS~-TnI~nl-~GI-S~LknLq~L~mrnLe~e----------~~~~l~~LF~L~~L~vLDIS~~~~~~~~  236 (699)
T KOG3665|consen  170 ASFPNLRSLDISG-TNISNL-SGI-SRLKNLQVLSMRNLEFE----------SYQDLIDLFNLKKLRVLDISRDKNNDDT  236 (699)
T ss_pred             hccCccceeecCC-CCccCc-HHH-hccccHHHHhccCCCCC----------chhhHHHHhcccCCCeeeccccccccch
Confidence            3577888888888 677766 454 88888888877765443          1233467778888888888765432222


Q ss_pred             ---c-----ccccccCcEEEEE
Q 039375           85 ---E-----GFLARKLERFKIS   98 (311)
Q Consensus        85 ---~-----~~~l~~L~~l~~~   98 (311)
                         .     +..+++|+.++++
T Consensus       237 ~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  237 KIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HHHHHHHHhcccCccccEEecC
Confidence               1     1127788888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.86  E-value=0.00014  Score=54.88  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=66.0

Q ss_pred             CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      ....+|+..+|++ |.++++|+.+..+.+-+.+|++.+|.+. ++  |         .++..++.|+.|++++|.....|
T Consensus        50 ~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neis-dv--P---------eE~Aam~aLr~lNl~~N~l~~~p  116 (177)
T KOG4579|consen   50 SKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEIS-DV--P---------EELAAMPALRSLNLRFNPLNAEP  116 (177)
T ss_pred             hCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhh-hc--h---------HHHhhhHHhhhcccccCccccch
Confidence            4567888889999 8999999988677778999999999998 88  8         88999999999999999988888


Q ss_pred             cccc-cccCcEEE
Q 039375           85 EGFL-ARKLERFK   96 (311)
Q Consensus        85 ~~~~-l~~L~~l~   96 (311)
                      +-+. +.++..++
T Consensus       117 ~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen  117 RVIAPLIKLDMLD  129 (177)
T ss_pred             HHHHHHHhHHHhc
Confidence            8664 55555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.83  E-value=0.00094  Score=58.04  Aligned_cols=67  Identities=15%  Similarity=0.119  Sum_probs=37.2

Q ss_pred             ccccCccEEEEecCCCceeecCcc-----ccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSS-----TAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~-----~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                      +.|++|+.|.+.+| .++. ....     .-...|+|++|.+.+|.-..+-..    .........|.|+.|.+.+|.
T Consensus       238 ~s~~~L~El~l~dc-ll~~-~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~----~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  238 SSWPHLRELNLGDC-LLEN-EGAIAFVDALKESAPSLEVLELAGNEITRDAAL----ALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             cccchheeeccccc-cccc-ccHHHHHHHHhccCCCCceeccCcchhHHHHHH----HHHHHHhcchhhHHhcCCccc
Confidence            45678888888888 6665 2222     123477888888877652221100    001111235677777777663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.70  E-value=0.00045  Score=58.95  Aligned_cols=81  Identities=19%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      ++.-+++++.|+++. |.|..+..  +..|++|++|++++|.+. +++|           .=..|-|+++|.+..|.++.
T Consensus       302 SvKL~Pkir~L~lS~-N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~G-----------wh~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  302 SVKLAPKLRRLILSQ-NRIRTVQN--LAELPQLQLLDLSGNLLA-ECVG-----------WHLKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             hhhhccceeEEeccc-cceeeehh--hhhcccceEeecccchhH-hhhh-----------hHhhhcCEeeeehhhhhHhh
Confidence            566688999999999 88888887  599999999999999876 5532           11246677788887777776


Q ss_pred             cccccccccCcEEEEE
Q 039375           83 LQEGFLARKLERFKIS   98 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~   98 (311)
                      +...-.+.+|.+++..
T Consensus       367 LSGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  367 LSGLRKLYSLVNLDLS  382 (490)
T ss_pred             hhhhHhhhhheecccc
Confidence            6544346667776665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.69  E-value=0.00068  Score=62.35  Aligned_cols=80  Identities=24%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      ++.+++|.+|++.+ +.|..+...+ ..+.+|++|++++|.|. .+            ..+..+..|+.|++.+|.+..+
T Consensus        91 l~~~~~l~~l~l~~-n~i~~i~~~l-~~~~~L~~L~ls~N~I~-~i------------~~l~~l~~L~~L~l~~N~i~~~  155 (414)
T KOG0531|consen   91 LSKLKSLEALDLYD-NKIEKIENLL-SSLVNLQVLDLSFNKIT-KL------------EGLSTLTLLKELNLSGNLISDI  155 (414)
T ss_pred             cccccceeeeeccc-cchhhcccch-hhhhcchheeccccccc-cc------------cchhhccchhhheeccCcchhc
Confidence            67788999999999 8888887655 88999999999999887 66            6667777788899988888877


Q ss_pred             ccccccccCcEEEEE
Q 039375           84 QEGFLARKLERFKIS   98 (311)
Q Consensus        84 p~~~~l~~L~~l~~~   98 (311)
                      ...-.+.+|+.+.++
T Consensus       156 ~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen  156 SGLESLKSLKLLDLS  170 (414)
T ss_pred             cCCccchhhhcccCC
Confidence            665446666666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.36  E-value=0.0069  Score=48.91  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=17.1

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE   46 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~   46 (311)
                      +..|..|.++. |.|+.|.+.+..-+++|+.|.+.+|.+.
T Consensus        63 l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   63 LPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             ccccceEEecC-CcceeeccchhhhccccceEEecCcchh
Confidence            34444444444 4444444444222334444444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.16  E-value=0.0014  Score=56.00  Aligned_cols=60  Identities=22%  Similarity=0.255  Sum_probs=42.1

Q ss_pred             CCCccEEecCCCCCCcccC--hhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecC
Q 039375            7 VTKLRLLDLRDCFHLKVIA--PNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKN   79 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp--~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~   79 (311)
                      .++++.|||.+ |.|+.-.  ..++.+|+.|++|+++.|.+...+            +.+ ..+.+|+.|-+.+.+
T Consensus        70 ~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I------------~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   70 VTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDI------------KSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             hhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcc------------ccCcccccceEEEEEcCCC
Confidence            56778899999 6776332  245578999999999999876333            333 356788888886544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.0037  Score=52.30  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             cCCCCCccEEecCCCC-CCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            4 LGQVTKLRLLDLRDCF-HLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~-~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      +-.|++|++|.+++++ .+. .++.-+ .++++|++|++++|++. .+..         +..++.+.+|..|++.++...
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~-~lst---------l~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIK-DLST---------LRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccc-cccc---------cchhhhhcchhhhhcccCCcc
Confidence            3457788888888831 222 444433 66688888888888876 3422         266677778888888776655


Q ss_pred             cccc---ccc--cccCcEEEE
Q 039375           82 ILQE---GFL--ARKLERFKI   97 (311)
Q Consensus        82 ~lp~---~~~--l~~L~~l~~   97 (311)
                      .+-.   .++  +++|.+++.
T Consensus       130 ~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  130 NLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             ccccHHHHHHHHhhhhccccc
Confidence            4332   122  667777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.89  E-value=0.0017  Score=59.73  Aligned_cols=79  Identities=20%  Similarity=0.271  Sum_probs=65.4

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      +..+++|++|++++ +.|+.+..  +..+..|+.|++.+|.+. .+            .++..+.+|+.+++..|.+..+
T Consensus       114 l~~~~~L~~L~ls~-N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~------------~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSF-NKITKLEG--LSTLTLLKELNLSGNLIS-DI------------SGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             hhhhhcchheeccc-cccccccc--hhhccchhhheeccCcch-hc------------cCCccchhhhcccCCcchhhhh
Confidence            45699999999999 89999977  689999999999999987 66            6667799999999999988888


Q ss_pred             ccc--cccccCcEEEEE
Q 039375           84 QEG--FLARKLERFKIS   98 (311)
Q Consensus        84 p~~--~~l~~L~~l~~~   98 (311)
                      ...  -.+.+++.+++.
T Consensus       178 e~~~~~~~~~l~~l~l~  194 (414)
T KOG0531|consen  178 ENDELSELISLEELDLG  194 (414)
T ss_pred             hhhhhhhccchHHHhcc
Confidence            772  345666666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.79  E-value=0.0031  Score=31.73  Aligned_cols=18  Identities=33%  Similarity=0.481  Sum_probs=10.8

Q ss_pred             CccEEecCCCCCCcccChh
Q 039375            9 KLRLLDLRDCFHLKVIAPN   27 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~   27 (311)
                      +|++|++++| .++.+|++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4566666663 55566655

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.68  E-value=0.00063  Score=63.46  Aligned_cols=67  Identities=19%  Similarity=0.194  Sum_probs=37.4

Q ss_pred             CCCccEEecCCCCCCcccC-hhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375            7 VTKLRLLDLRDCFHLKVIA-PNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp-~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      .+.|+.|.+.+|..+.... ..+...+++|++|++++|...+... +     .....-...+++|+.|+++...
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~-----~~~~~~~~~~~~L~~l~l~~~~  254 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS-P-----LLLLLLLSICRKLKSLDLSGCG  254 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc-h-----hHhhhhhhhcCCcCccchhhhh
Confidence            5677888888887777532 1223778888888888742111110 0     0000122334777777776544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=0.0012  Score=55.88  Aligned_cols=60  Identities=30%  Similarity=0.412  Sum_probs=31.7

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      ++.|.+|.|+- |+|+.+-+  +.++++|++|++..|.|. .+         ..+.-++++++|++|++..|.
T Consensus        40 Mp~lEVLsLSv-NkIssL~p--l~rCtrLkElYLRkN~I~-sl---------dEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   40 MPLLEVLSLSV-NKISSLAP--LQRCTRLKELYLRKNCIE-SL---------DELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             cccceeEEeec-cccccchh--HHHHHHHHHHHHHhcccc-cH---------HHHHHHhcCchhhhHhhccCC
Confidence            44455555554 45554444  355555555555555443 22         223555667777777776544

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.40  E-value=0.028  Score=50.97  Aligned_cols=38  Identities=21%  Similarity=0.409  Sum_probs=24.2

Q ss_pred             CccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEE
Q 039375          202 NLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV  243 (311)
Q Consensus       202 ~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~  243 (311)
                      +|+.|.+.+|..++.+ + +.+  .++|+.|++++|..+..+
T Consensus        73 sLtsL~Lsnc~nLtsL-P-~~L--P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         73 ELTEITIENCNNLTTL-P-GSI--PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             CCcEEEccCCCCcccC-C-chh--hhhhhheEccCccccccc
Confidence            5788888877776652 2 222  247788888877655443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.002  Score=51.91  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=48.7

Q ss_pred             ccccCccEEEEecCCCceeecCccccc-cCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccccccee
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSSTAK-TLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSF  275 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~  275 (311)
                      ..++.++.|.+.+|..+.+ +..+.+. -.++|+.|+|++|+.+++-....       ...|++|+.|.+.+++.....
T Consensus       122 ~~l~~i~~l~l~~ck~~dD-~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-------L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDD-WCLERLGGLAPSLQDLDLSGCPRITDGGLAC-------LLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             hccchhhhheeccccchhh-HHHHHhcccccchheeeccCCCeechhHHHH-------HHHhhhhHHHHhcCchhhhch
Confidence            3567788888888888877 4444444 37888899998888877652221       256788888888887655443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.24  E-value=0.026  Score=45.65  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             cccCCCCCccEEEEeecCccccccccc--cccCcEEEEE
Q 039375           62 DELMLLPWLTTLEIDVKNDSILQEGFL--ARKLERFKIS   98 (311)
Q Consensus        62 ~~l~~L~~L~~L~l~~~~~~~lp~~~~--l~~L~~l~~~   98 (311)
                      ..+..+++|.+|.+.+|.+..+...+.  +++|..+.+.
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            344455555566665555555555443  4455555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.70  E-value=0.00095  Score=56.43  Aligned_cols=78  Identities=17%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE   85 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~   85 (311)
                      .|.+.+.|+.+|| .+..|.-  +.+|+.|++|.++-|.|+ .+            ..+..+++|+.|.+..|.+..+-+
T Consensus        17 dl~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIs-sL------------~pl~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKIS-SL------------APLQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             HHHHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccc-cc------------hhHHHHHHHHHHHHHhcccccHHH
Confidence            3667888999995 6666654  789999999999999987 55            778889999999999999888877


Q ss_pred             ccc---cccCcEEEEEe
Q 039375           86 GFL---ARKLERFKISI   99 (311)
Q Consensus        86 ~~~---l~~L~~l~~~~   99 (311)
                      ...   +++|+.+|+..
T Consensus        81 L~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   81 LEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHHhcCchhhhHhhcc
Confidence            553   78888888863

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.63  E-value=0.028  Score=28.17  Aligned_cols=15  Identities=20%  Similarity=0.306  Sum_probs=12.6

Q ss_pred             ccceEEeccccceeee
Q 039375           34 RLEELCMGNCSVEWEV   49 (311)
Q Consensus        34 ~Lq~L~l~~~~~~~~~   49 (311)
                      +||+|++++|.++ .+
T Consensus         1 ~L~~Ldls~n~l~-~i   15 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SI   15 (22)
T ss_dssp             TESEEEETSSEES-EE
T ss_pred             CccEEECCCCcCE-eC
Confidence            5888999999887 77

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.0021  Score=51.83  Aligned_cols=86  Identities=14%  Similarity=0.178  Sum_probs=64.7

Q ss_pred             CccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCce
Q 039375          202 NLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYT  281 (311)
Q Consensus       202 ~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~  281 (311)
                      .++.++-+++ .+.. .....+.+++.++.|.+.+|..+.++.-.--      -+.+++|+.|++++|+++++.... ..
T Consensus       102 ~IeaVDAsds-~I~~-eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l------~~~~~~L~~L~lsgC~rIT~~GL~-~L  172 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMY-EGLEHLRDLRSIKSLSLANCKYFDDWCLERL------GGLAPSLQDLDLSGCPRITDGGLA-CL  172 (221)
T ss_pred             eEEEEecCCc-hHHH-HHHHHHhccchhhhheeccccchhhHHHHHh------cccccchheeeccCCCeechhHHH-HH
Confidence            3577777777 6666 5667788999999999999998877643111      136899999999999999887321 34


Q ss_pred             ecCCCccEEEEecCC
Q 039375          282 FKFPSLEYLEVIGCP  296 (311)
Q Consensus       282 ~~~~~L~~L~i~~c~  296 (311)
                      ..+++|+.|.+.+.+
T Consensus       173 ~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  173 LKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHhhhhHHHHhcCch
Confidence            578899988888764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.57  E-value=0.0029  Score=60.34  Aligned_cols=39  Identities=18%  Similarity=0.269  Sum_probs=27.3

Q ss_pred             CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE   46 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~   46 (311)
                      .-+++|++|||+. |++.++. . +.+|.+|++||+++|.+.
T Consensus       184 qll~ale~LnLsh-Nk~~~v~-~-Lr~l~~LkhLDlsyN~L~  222 (1096)
T KOG1859|consen  184 QLLPALESLNLSH-NKFTKVD-N-LRRLPKLKHLDLSYNCLR  222 (1096)
T ss_pred             HHHHHhhhhccch-hhhhhhH-H-HHhcccccccccccchhc
Confidence            3456777777777 6766666 3 477777777777777765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.15  E-value=0.046  Score=28.54  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=17.0

Q ss_pred             CCCccEEecCCCCCCcccChhHH
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVI   29 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~   29 (311)
                      |++|++|+|++ +.++.+|++++
T Consensus         1 L~~L~~L~L~~-N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSN-NQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCC-CcCCcCCHHHc
Confidence            56788888888 68888887653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.15  E-value=0.046  Score=28.54  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=17.0

Q ss_pred             CCCccEEecCCCCCCcccChhHH
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVI   29 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~   29 (311)
                      |++|++|+|++ +.++.+|++++
T Consensus         1 L~~L~~L~L~~-N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSN-NQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCC-CcCCcCCHHHc
Confidence            56788888888 68888887653

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.12  E-value=0.04  Score=50.01  Aligned_cols=80  Identities=19%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA  278 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~  278 (311)
                      .+.+++.|++++| .++.+ + . +  -++|+.|.+++|..++.+..          .-.++|++|.+.+|..++++.  
T Consensus        50 ~~~~l~~L~Is~c-~L~sL-P-~-L--P~sLtsL~Lsnc~nLtsLP~----------~LP~nLe~L~Ls~Cs~L~sLP--  111 (426)
T PRK15386         50 EARASGRLYIKDC-DIESL-P-V-L--PNELTEITIENCNNLTTLPG----------SIPEGLEKLTVCHCPEISGLP--  111 (426)
T ss_pred             HhcCCCEEEeCCC-CCccc-C-C-C--CCCCcEEEccCCCCcccCCc----------hhhhhhhheEccCcccccccc--
Confidence            4688999999999 88874 3 1 1  23799999999998766531          123579999999998877652  


Q ss_pred             CceecCCCccEEEEec--CCCCeecC
Q 039375          279 NYTFKFPSLEYLEVIG--CPKMKTFT  302 (311)
Q Consensus       279 ~~~~~~~~L~~L~i~~--c~~l~~~~  302 (311)
                            ++|+.|.+..  |..+..+|
T Consensus       112 ------~sLe~L~L~~n~~~~L~~LP  131 (426)
T PRK15386        112 ------ESVRSLEIKGSATDSIKNVP  131 (426)
T ss_pred             ------cccceEEeCCCCCcccccCc
Confidence                  3566666643  33444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.61  E-value=0.0061  Score=46.26  Aligned_cols=67  Identities=10%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      .+.++.|+|.+ +.|..+|.++ ..++.|+.|+++.|++. ..  |         +-+..|.++-+|+...+....+|-.
T Consensus        76 f~t~t~lNl~~-neisdvPeE~-Aam~aLr~lNl~~N~l~-~~--p---------~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen   76 FPTATTLNLAN-NEISDVPEEL-AAMPALRSLNLRFNPLN-AE--P---------RVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cchhhhhhcch-hhhhhchHHH-hhhHHhhhcccccCccc-cc--h---------HHHHHHHhHHHhcCCCCccccCcHH
Confidence            45788999999 8999999996 99999999999999987 44  4         6666788888898887777777665


Q ss_pred             c
Q 039375           87 F   87 (311)
Q Consensus        87 ~   87 (311)
                      +
T Consensus       142 l  142 (177)
T KOG4579|consen  142 L  142 (177)
T ss_pred             H
Confidence            4

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.29  E-value=0.059  Score=25.10  Aligned_cols=16  Identities=38%  Similarity=0.582  Sum_probs=6.7

Q ss_pred             CccEEecCCCCCCcccC
Q 039375            9 KLRLLDLRDCFHLKVIA   25 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp   25 (311)
                      +|+.|++++| .++++|
T Consensus         2 ~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCC-CCCCCc
Confidence            5566666663 355444

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.71  E-value=0.013  Score=56.02  Aligned_cols=75  Identities=21%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF-   87 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~-   87 (311)
                      +|.+.+.++ |.+..+..++ .=++.||.|++++|.+. .+            +.+..|+.|++||+++|....+|..- 
T Consensus       165 ~L~~a~fsy-N~L~~mD~SL-qll~ale~LnLshNk~~-~v------------~~Lr~l~~LkhLDlsyN~L~~vp~l~~  229 (1096)
T KOG1859|consen  165 KLATASFSY-NRLVLMDESL-QLLPALESLNLSHNKFT-KV------------DNLRRLPKLKHLDLSYNCLRHVPQLSM  229 (1096)
T ss_pred             hHhhhhcch-hhHHhHHHHH-HHHHHhhhhccchhhhh-hh------------HHHHhcccccccccccchhccccccch
Confidence            355566666 7778788776 88899999999999887 65            78889999999999999988887632 


Q ss_pred             ccccCcEEEEE
Q 039375           88 LARKLERFKIS   98 (311)
Q Consensus        88 ~l~~L~~l~~~   98 (311)
                      .--+|+.+.+.
T Consensus       230 ~gc~L~~L~lr  240 (1096)
T KOG1859|consen  230 VGCKLQLLNLR  240 (1096)
T ss_pred             hhhhheeeeec
Confidence            11236666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.25  E-value=0.051  Score=45.63  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccc--cceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNC--SVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~--~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      +.+|.+|++.++ .++.+-.  +.+|++||+|.++.|  ++...+  +         --+..+++|++++++.|++..
T Consensus        42 ~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l--~---------vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   42 FVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNYRRVSGGL--E---------VLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             ccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCcccccccc--e---------ehhhhCCceeEEeecCCcccc
Confidence            445566666553 2222222  256677888888777  444343  1         222344788888887777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=89.89  E-value=0.19  Score=42.78  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             cCCCCCccEEecCCCCCCc----ccChh------HHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEE
Q 039375            4 LGQVTKLRLLDLRDCFHLK----VIAPN------VISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTL   73 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~----~lp~~------i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L   73 (311)
                      |.+-.+|+..++++ -..+    .+|++      .+-++++||..+++.|.+.-+.  |     ..-.+-+..-..|++|
T Consensus        54 ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~--~-----e~L~d~is~~t~l~HL  125 (388)
T COG5238          54 IANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF--P-----EELGDLISSSTDLVHL  125 (388)
T ss_pred             HhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc--c-----hHHHHHHhcCCCceeE
Confidence            34456777777776 3322    23332      1256788899999888775444  3     0000233445788888


Q ss_pred             EEeecCcccccc
Q 039375           74 EIDVKNDSILQE   85 (311)
Q Consensus        74 ~l~~~~~~~lp~   85 (311)
                      .+++|+.+.+..
T Consensus       126 ~l~NnGlGp~aG  137 (388)
T COG5238         126 KLNNNGLGPIAG  137 (388)
T ss_pred             EeecCCCCccch
Confidence            898888766554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=88.04  E-value=0.15  Score=47.50  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=17.5

Q ss_pred             ccCccEEEEecCCCceeecCcccc-ccCCCCCEEeeccCcC
Q 039375          200 FRNLTKLVAVGCKELIHLVTSSTA-KTLVRLVTVQVYGCRA  239 (311)
Q Consensus       200 l~~L~~L~l~~~~~l~~l~~~~~l-~~l~~L~~L~l~~c~~  239 (311)
                      +++|+.++++.|..+++ .....+ ..+++|+.|.+.+|..
T Consensus       242 ~~~L~~l~l~~~~~isd-~~l~~l~~~c~~L~~L~l~~c~~  281 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTD-IGLSALASRCPNLETLSLSNCSN  281 (482)
T ss_pred             cCCcCccchhhhhccCc-hhHHHHHhhCCCcceEccCCCCc
Confidence            34555555555533444 222222 2245555555555543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.40  E-value=0.35  Score=25.16  Aligned_cols=16  Identities=31%  Similarity=0.785  Sum_probs=13.1

Q ss_pred             CCCccEEEEecCCCCe
Q 039375          284 FPSLEYLEVIGCPKMK  299 (311)
Q Consensus       284 ~~~L~~L~i~~c~~l~  299 (311)
                      +++|++|++++|+++.
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            5788889999998875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=84.31  E-value=0.46  Score=41.83  Aligned_cols=70  Identities=33%  Similarity=0.445  Sum_probs=41.4

Q ss_pred             cCCCCCccEEecCCCCCCcccCh-hH---HHhccccceEEeccccceeeeeccccccccccccccC-CCCCccEEEEeec
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAP-NV---ISSLIRLEELCMGNCSVEWEVERANTERSNASLDELM-LLPWLTTLEIDVK   78 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~-~i---~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~-~L~~L~~L~l~~~   78 (311)
                      +..+++|++|||++ |.++.... .+   ++.+++|++|++++|.+.  -.|     ..+.+..+. ..++|+.|++.+|
T Consensus       209 l~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcll~--~~G-----a~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCLLE--NEG-----AIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccccc--ccc-----HHHHHHHHhccCCCCceeccCcc
Confidence            45678888999988 66653322 11   245778888888888764  111     111112221 2577888888776


Q ss_pred             Ccc
Q 039375           79 NDS   81 (311)
Q Consensus        79 ~~~   81 (311)
                      .+.
T Consensus       281 eIt  283 (382)
T KOG1909|consen  281 EIT  283 (382)
T ss_pred             hhH
Confidence            643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 51/340 (15%), Positives = 98/340 (28%), Gaps = 93/340 (27%)

Query: 6   QVTKLR--LLDLRDCFHLKVIAPNVISSLIRLEELC-MGNCSVEWEVERANTERSNASLD 62
              KLR  LL+LR        A NV+        +  +      W     +   S     
Sbjct: 136 PYLKLRQALLELRP-------AKNVL--------IDGVLGSGKTWVA--LDVCLSYKVQC 178

Query: 63  ELMLLP----WLTTLEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSR 118
           ++        WL     +     +     L  +++            +++ +     ++ 
Sbjct: 179 KM---DFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAE 233

Query: 119 -SHFLINHNHER-LRELKLKPDFTDICSMK-LQAINNVEYISQSRITLTVSLFIR-RGIF 174
               L +  +E  L  L L     ++ + K   A N        +I LT     R + + 
Sbjct: 234 LRRLLKSKPYENCL--LVL--L--NVQNAKAWNAFNL-----SCKILLTT----RFKQVT 278

Query: 175 NGRMLRETFEEVGND--KILLPSSSVSFRNLTKLVAVGCKEL------IH-LVTSSTAKT 225
           +      T     +     L P    S   L K +    ++L       +    S  A++
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 226 L----VRLVTVQVYGCRAMTEVV---IND----------------KEGVDIEEIVFSKL- 261
           +          +   C  +T ++   +N                      I  I+ S + 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 262 -------KALILCDLD--SLTSFCSANYTFKFPSLEYLEV 292
                    +++  L   SL        T   PS+ YLE+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLEL 435

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.67
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.66
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.64
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.61
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.61
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.52
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.52
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.52
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.51
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.5
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.48
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.46
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.39
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.38
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.36
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.35
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.29
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.22
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.21
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.1
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.1
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.1
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.07
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.03
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.03
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.03
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.0
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.99
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.98
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.97
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.96
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.95
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.92
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.91
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.85
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.82
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.59
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.22
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.67
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.63
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.45
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.17
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	85.6
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.72

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.79  E-value=2e-18  Score=152.23  Aligned_cols=228  Identities=16%  Similarity=0.135  Sum_probs=137.4

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      ..++++|++++ +.++.+|+++ +++++|++|++++|.+. .+  |         ..++.+++|++|+++.|.+..+|..
T Consensus        80 ~~~l~~L~L~~-n~l~~lp~~l-~~l~~L~~L~L~~n~l~-~l--p---------~~~~~l~~L~~L~Ls~n~l~~lp~~  145 (328)
T 4fcg_A           80 QPGRVALELRS-VPLPQFPDQA-FRLSHLQHMTIDAAGLM-EL--P---------DTMQQFAGLETLTLARNPLRALPAS  145 (328)
T ss_dssp             STTCCEEEEES-SCCSSCCSCG-GGGTTCSEEEEESSCCC-CC--C---------SCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred             ccceeEEEccC-CCchhcChhh-hhCCCCCEEECCCCCcc-ch--h---------HHHhccCCCCEEECCCCccccCcHH
Confidence            57899999999 7889999998 89999999999999998 77  7         8899999999999999999899988


Q ss_pred             cc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           87 FL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        87 ~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                      +. +++|+.++++.+.  ..+.+|.....  ......+ +++++++.+         .+..+ .++.+. .....+++|+
T Consensus       146 l~~l~~L~~L~L~~n~--~~~~~p~~~~~--~~~~~~~-~~l~~L~~L---------~L~~n-~l~~lp-~~l~~l~~L~  209 (328)
T 4fcg_A          146 IASLNRLRELSIRACP--ELTELPEPLAS--TDASGEH-QGLVNLQSL---------RLEWT-GIRSLP-ASIANLQNLK  209 (328)
T ss_dssp             GGGCTTCCEEEEEEET--TCCCCCSCSEE--EC-CCCE-EESTTCCEE---------EEEEE-CCCCCC-GGGGGCTTCC
T ss_pred             HhcCcCCCEEECCCCC--CccccChhHhh--ccchhhh-ccCCCCCEE---------ECcCC-CcCcch-HhhcCCCCCC
Confidence            85 8999999997533  33333321100  0000000 112223222         22221 111110 0014455566


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      +|++++ .+...                 +.....+++|+.|++++| .+.. ..+..+..+++|+.|++++|+..+.+.
T Consensus       210 ~L~L~~N~l~~l-----------------~~~l~~l~~L~~L~Ls~n-~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          210 SLKIRNSPLSAL-----------------GPAIHHLPKLEELDLRGC-TALR-NYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             EEEEESSCCCCC-----------------CGGGGGCTTCCEEECTTC-TTCC-BCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             EEEccCCCCCcC-----------------chhhccCCCCCEEECcCC-cchh-hhHHHhcCCCCCCEEECCCCCchhhcc
Confidence            666554 00000                 112344566666666666 3333 234455666666666666666555442


Q ss_pred             ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEe
Q 039375          245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVI  293 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~  293 (311)
                              .....+++|++|++++|+.+..+.  .....+++|+.+.+.
T Consensus       271 --------~~~~~l~~L~~L~L~~n~~~~~iP--~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          271 --------LDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVP  309 (328)
T ss_dssp             --------TTGGGCTTCCEEECTTCTTCCCCC--GGGGGSCTTCEEECC
T ss_pred             --------hhhhcCCCCCEEeCCCCCchhhcc--HHHhhccCceEEeCC
Confidence                    123456666666666666666552  245556666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=6.1e-18  Score=149.09  Aligned_cols=202  Identities=16%  Similarity=0.213  Sum_probs=146.4

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN-   79 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~-   79 (311)
                      |..++++++|++|+|++ +.++.+|..+ +++++|++|++++|.+. .+  |         ..++.+++|++|++++|. 
T Consensus        97 p~~l~~l~~L~~L~L~~-n~l~~lp~~~-~~l~~L~~L~Ls~n~l~-~l--p---------~~l~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A           97 PDQAFRLSHLQHMTIDA-AGLMELPDTM-QQFAGLETLTLARNPLR-AL--P---------ASIASLNRLRELSIRACPE  162 (328)
T ss_dssp             CSCGGGGTTCSEEEEES-SCCCCCCSCG-GGGTTCSEEEEESCCCC-CC--C---------GGGGGCTTCCEEEEEEETT
T ss_pred             ChhhhhCCCCCEEECCC-CCccchhHHH-hccCCCCEEECCCCccc-cC--c---------HHHhcCcCCCEEECCCCCC
Confidence            56788999999999999 6788999988 99999999999999998 77  7         889999999999999854 


Q ss_pred             ccccccccc----------cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCC
Q 039375           80 DSILQEGFL----------ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQA  149 (311)
Q Consensus        80 ~~~lp~~~~----------l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~  149 (311)
                      .+.+|..+.          +++|+.++++.+..   ..+|..  +          +.+++++.+.+..+         . 
T Consensus       163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l---~~lp~~--l----------~~l~~L~~L~L~~N---------~-  217 (328)
T 4fcg_A          163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGI---RSLPAS--I----------ANLQNLKSLKIRNS---------P-  217 (328)
T ss_dssp             CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC---CCCCGG--G----------GGCTTCCEEEEESS---------C-
T ss_pred             ccccChhHhhccchhhhccCCCCCEEECcCCCc---CcchHh--h----------cCCCCCCEEEccCC---------C-
Confidence            777887663          88999999985432   144421  2          55556655555432         1 


Q ss_pred             cceecccccccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCC
Q 039375          150 INNVEYISQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRL  229 (311)
Q Consensus       150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L  229 (311)
                      ++.+.. ....+++|+.|++++    +....           ..|.....+++|+.|++++| .+.. ..+..+..+++|
T Consensus       218 l~~l~~-~l~~l~~L~~L~Ls~----n~~~~-----------~~p~~~~~l~~L~~L~L~~n-~~~~-~~p~~~~~l~~L  279 (328)
T 4fcg_A          218 LSALGP-AIHHLPKLEELDLRG----CTALR-----------NYPPIFGGRAPLKRLILKDC-SNLL-TLPLDIHRLTQL  279 (328)
T ss_dssp             CCCCCG-GGGGCTTCCEEECTT----CTTCC-----------BCCCCTTCCCCCCEEECTTC-TTCC-BCCTTGGGCTTC
T ss_pred             CCcCch-hhccCCCCCEEECcC----Ccchh-----------hhHHHhcCCCCCCEEECCCC-Cchh-hcchhhhcCCCC
Confidence            221111 116788899999875    10000           11334567889999999999 4444 345678899999


Q ss_pred             CEEeeccCcCceEEeccCCcccccccccccccceeecc
Q 039375          230 VTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILC  267 (311)
Q Consensus       230 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~  267 (311)
                      ++|++++|+.++.++        .....+++|+.+.+.
T Consensus       280 ~~L~L~~n~~~~~iP--------~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLP--------SLIAQLPANCIILVP  309 (328)
T ss_dssp             CEEECTTCTTCCCCC--------GGGGGSCTTCEEECC
T ss_pred             CEEeCCCCCchhhcc--------HHHhhccCceEEeCC
Confidence            999999999888773        334566666666655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.74  E-value=2.5e-17  Score=148.48  Aligned_cols=89  Identities=17%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375          194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT  273 (311)
Q Consensus       194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~  273 (311)
                      ..+...+++|+.|++++| ++++ ..+..+..+++|+.|++++|. +..+..        ....+++|++|.++++ .++
T Consensus       241 ~~~l~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~  308 (390)
T 3o6n_A          241 TAWLLNYPGLVEVDLSYN-ELEK-IMYHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLL  308 (390)
T ss_dssp             CGGGGGCTTCSEEECCSS-CCCE-EESGGGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCC
T ss_pred             cHHHcCCCCccEEECCCC-cCCC-cChhHccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cce
Confidence            334556778888888888 6776 445666777888888887664 333321        1134666777777665 344


Q ss_pred             eeccCCceecCCCccEEEEecCC
Q 039375          274 SFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       274 ~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .+..  ....+++|++|++.+|+
T Consensus       309 ~~~~--~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          309 HVER--NQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             CCGG--GHHHHTTCSEEECCSSC
T ss_pred             ecCc--cccccCcCCEEECCCCc
Confidence            4422  23445666666666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.73  E-value=3.8e-17  Score=151.10  Aligned_cols=256  Identities=18%  Similarity=0.125  Sum_probs=139.3

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..+.++++|++|+|++ +.++.+++..++++++|++|++++|.+. .+. +         ..++.+++|++|+++.|.+.
T Consensus        50 ~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           50 DEFASFPHLEELELNE-NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIP-L---------GVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             TTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-SCC-T---------TSSTTCTTCCEEECTTSCCC
T ss_pred             hHccCCCCCCEEECCC-CccCEeChhhhhCCccCCEEECCCCcCC-ccC-c---------ccccCCCCCCEEECCCCccc
Confidence            4567778888888888 5666663333377888888888887776 441 1         33566777777777776665


Q ss_pred             cccc-ccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc---------------eeeEEc
Q 039375           82 ILQE-GFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD---------------FTDICS  144 (311)
Q Consensus        82 ~lp~-~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------------l~~L~l  144 (311)
                      .++. .+. +++|+.++++.+...  ...+.  .+          .++++++.+.+..+               ++.|.+
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~--~~----------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  183 (477)
T 2id5_A          118 ILLDYMFQDLYNLKSLEVGDNDLV--YISHR--AF----------SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL  183 (477)
T ss_dssp             EECTTTTTTCTTCCEEEECCTTCC--EECTT--SS----------TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred             cCChhHccccccCCEEECCCCccc--eeChh--hc----------cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence            5543 332 667777766532211  10000  01          23334444444332               333443


Q ss_pred             cccCCcceecccccccccccceEEEec--eEecccccccCcccccccEEeC------C-CCcccccCccEEEEecCCCce
Q 039375          145 MKLQAINNVEYISQSRITLTVSLFIRR--GIFNGRMLRETFEEVGNDKILL------P-SSSVSFRNLTKLVAVGCKELI  215 (311)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~~~------~-~~~~~l~~L~~L~l~~~~~l~  215 (311)
                      ..+. ++.........+++|+.|++++  .....+........+..|.+.+      + .....+++|+.|++++| .++
T Consensus       184 ~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~  261 (477)
T 2id5_A          184 RHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PIS  261 (477)
T ss_dssp             ESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCC
T ss_pred             CCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCC
Confidence            3221 2221111114566778888765  0111111111111344444333      1 12345678888888888 677


Q ss_pred             eecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          216 HLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       216 ~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      . .+...+..+++|+.|++++|. +..+..       .....+++|++|+++++ .++.+... .+..+++|++|++.++
T Consensus       262 ~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          262 T-IEGSMLHELLRLQEIQLVGGQ-LAVVEP-------YAFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSN  330 (477)
T ss_dssp             E-ECTTSCTTCTTCCEEECCSSC-CSEECT-------TTBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSS
T ss_pred             c-cChhhccccccCCEEECCCCc-cceECH-------HHhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCC
Confidence            6 455667778888888888764 333322       12346778888888876 45555321 2345778888888765


Q ss_pred             C
Q 039375          296 P  296 (311)
Q Consensus       296 ~  296 (311)
                      +
T Consensus       331 ~  331 (477)
T 2id5_A          331 P  331 (477)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=3e-17  Score=156.12  Aligned_cols=249  Identities=17%  Similarity=0.151  Sum_probs=118.8

Q ss_pred             CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      +.+++|++|+|++ +.++.+|+..++.+++|++|++++|.+....  |         ..++.+++|++|++++|.+..+|
T Consensus        72 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~l~  139 (597)
T 3oja_B           72 DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--P---------HVFQNVPLLTVLVLERNDLSSLP  139 (597)
T ss_dssp             HHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCC--T---------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCCCC--H---------HHHcCCCCCCEEEeeCCCCCCCC
Confidence            3455555555555 3445444322255555555555555554222  2         34455666666666666655555


Q ss_pred             ccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceeccccc---
Q 039375           85 EGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQ---  158 (311)
Q Consensus        85 ~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~---  158 (311)
                      ..+  .+++|+.++++.+.  +.+..|.  .+          +.+++++.+.+.++ +..+.+..+++++.+....+   
T Consensus       140 ~~~~~~l~~L~~L~Ls~N~--l~~~~~~--~~----------~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNNN--LERIEDD--TF----------QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSC--CCBCCTT--TT----------TTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred             HHHhccCCCCCEEEeeCCc--CCCCChh--hh----------hcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccc
Confidence            543  25566666554221  1111110  01          34455555555443 22222333333332222211   


Q ss_pred             --ccccccceEEEec-eEecccccccCcccccccEE-----eCCCCcccccCccEEEEecCCCceeecCccccccCCCCC
Q 039375          159 --SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKI-----LLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLV  230 (311)
Q Consensus       159 --~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~-----~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~  230 (311)
                        ...+.|+.|++++ .+...+.  ..+..+..|.+     .++.+...+++|+.|++++| .+++ ..+..+..+++|+
T Consensus       206 ~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~  281 (597)
T 3oja_B          206 TLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEK-IMYHPFVKMQRLE  281 (597)
T ss_dssp             EEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCE-EESGGGTTCSSCC
T ss_pred             cccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCC-CCHHHhcCccCCC
Confidence              1222344555443 1111100  01112333332     23455667788888888888 7776 4456677788888


Q ss_pred             EEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          231 TVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       231 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      .|++++|. +..+...        ...+++|+.|.++++. +..+..  ....+++|++|++++|
T Consensus       282 ~L~Ls~N~-l~~l~~~--------~~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          282 RLYISNNR-LVALNLY--------GQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHN  334 (597)
T ss_dssp             EEECTTSC-CCEEECS--------SSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSS
T ss_pred             EEECCCCC-CCCCCcc--------cccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECCCC
Confidence            88888764 3333221        1345666666666653 344422  2334555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.72  E-value=9.4e-17  Score=144.68  Aligned_cols=249  Identities=15%  Similarity=0.196  Sum_probs=145.4

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      +..+++|++|++++ +.++.+++..++.+++|++|++++|.+....  |         ..++.+++|++|+++.|.+..+
T Consensus        65 ~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~l  132 (390)
T 3o6n_A           65 LDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--P---------HVFQNVPLLTVLVLERNDLSSL  132 (390)
T ss_dssp             HHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCC--T---------TTTTTCTTCCEEECCSSCCCCC
T ss_pred             hcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCC--H---------HHhcCCCCCCEEECCCCccCcC
Confidence            45677788888887 5677676533477888888888887776322  3         4567777777777777777777


Q ss_pred             cccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceeccccc--
Q 039375           84 QEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQ--  158 (311)
Q Consensus        84 p~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~--  158 (311)
                      |..+  .+++|+.++++.+.  +....|.  .+          ..+++++.+.+..+ +..+.+..++.++.+....+  
T Consensus       133 ~~~~~~~l~~L~~L~L~~n~--l~~~~~~--~~----------~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          133 PRGIFHNTPKLTTLSMSNNN--LERIEDD--TF----------QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSC--CCBCCTT--TT----------SSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CHHHhcCCCCCcEEECCCCc--cCccChh--hc----------cCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence            7654  26777777765322  1111110  01          33344444444432 22222222222221111100  


Q ss_pred             ------------------------ccccccceEEEec-eEecccccccCcccccccEEeC-------CCCcccccCccEE
Q 039375          159 ------------------------SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-------PSSSVSFRNLTKL  206 (311)
Q Consensus       159 ------------------------~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L  206 (311)
                                              ...++|+.|++++ .+.... .......+..+.+++       +.....+++|+.|
T Consensus       199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                                    1223455555554 111111 111112344444332       4445678999999


Q ss_pred             EEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCC
Q 039375          207 VAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPS  286 (311)
Q Consensus       207 ~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~  286 (311)
                      ++++| +++.+  +.....+++|+.|++++|. +..+        +.....+++|++|.+.+++ ++.+    ....+++
T Consensus       278 ~L~~n-~l~~~--~~~~~~l~~L~~L~L~~n~-l~~~--------~~~~~~l~~L~~L~L~~N~-i~~~----~~~~~~~  340 (390)
T 3o6n_A          278 YISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLHV--------ERNQPQFDRLENLYLDHNS-IVTL----KLSTHHT  340 (390)
T ss_dssp             ECCSS-CCCEE--ECSSSCCTTCCEEECCSSC-CCCC--------GGGHHHHTTCSEEECCSSC-CCCC----CCCTTCC
T ss_pred             ECCCC-cCccc--CcccCCCCCCCEEECCCCc-ceec--------CccccccCcCCEEECCCCc-ccee----Cchhhcc
Confidence            99999 88874  3445779999999999885 4443        2223568999999999875 5655    2457899


Q ss_pred             ccEEEEecCC
Q 039375          287 LEYLEVIGCP  296 (311)
Q Consensus       287 L~~L~i~~c~  296 (311)
                      |++|++.+++
T Consensus       341 L~~L~l~~N~  350 (390)
T 3o6n_A          341 LKNLTLSHND  350 (390)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEEcCCCC
Confidence            9999998863

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=2.4e-16  Score=144.68  Aligned_cols=86  Identities=19%  Similarity=0.123  Sum_probs=47.8

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..++++++|++|++++|.....++++.++++++|++|++++|.+....  |         ..++.+++|++|++++|.+.
T Consensus        48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~  116 (455)
T 3v47_A           48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE--T---------GAFNGLANLEVLTLTQCNLD  116 (455)
T ss_dssp             TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC--T---------TTTTTCTTCCEEECTTSCCB
T ss_pred             hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC--h---------hhccCcccCCEEeCCCCCCC
Confidence            456667777777777743323554443467777777777777665333  4         45555566666666555543


Q ss_pred             c-cccc--cc-cccCcEEEEE
Q 039375           82 I-LQEG--FL-ARKLERFKIS   98 (311)
Q Consensus        82 ~-lp~~--~~-l~~L~~l~~~   98 (311)
                      . +|..  +. +++|+.++++
T Consensus       117 ~~~~~~~~~~~l~~L~~L~L~  137 (455)
T 3v47_A          117 GAVLSGNFFKPLTSLEMLVLR  137 (455)
T ss_dssp             THHHHSSTTTTCTTCCEEECC
T ss_pred             ccccCcccccCcccCCEEECC
Confidence            2 2221  22 5555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.71  E-value=4.7e-17  Score=155.81  Aligned_cols=86  Identities=20%  Similarity=0.257  Sum_probs=69.9

Q ss_pred             CCccCCCCCccEEecCCCCCCcc------------------cChhHHH--hccccceEEeccccceeeeecccccccccc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKV------------------IAPNVIS--SLIRLEELCMGNCSVEWEVERANTERSNAS   60 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~------------------lp~~i~~--~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~   60 (311)
                      |..++++++|++|+|++ +.++.                  +|.++ +  ++++|++|++++|.+.+.+  |        
T Consensus       199 p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~--p--------  266 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKL--P--------  266 (636)
T ss_dssp             CGGGGGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSC--C--------
T ss_pred             CHHHhcccCCCEEECcC-CccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccC--h--------
Confidence            56788899999999999 55776                  88887 8  8999999999999887777  7        


Q ss_pred             ccccCCCCCccEEEEeecC-cc--ccccccc-c------ccCcEEEEEe
Q 039375           61 LDELMLLPWLTTLEIDVKN-DS--ILQEGFL-A------RKLERFKISI   99 (311)
Q Consensus        61 l~~l~~L~~L~~L~l~~~~-~~--~lp~~~~-l------~~L~~l~~~~   99 (311)
                       ..++.+++|++|+++.|. ..  .+|..+. +      ++|+.++++.
T Consensus       267 -~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          267 -TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             -TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             -HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence             888888899999998886 65  4777664 4      7888888753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.71  E-value=8e-17  Score=140.99  Aligned_cols=231  Identities=13%  Similarity=0.074  Sum_probs=119.3

Q ss_pred             CccCCCCCccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            2 KALGQVTKLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      ..++++++|++|++++++.+. .+|..+ +++++|++|++++|.+...+  |         ..++.+++|++|+++.|.+
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~--p---------~~~~~l~~L~~L~Ls~N~l  137 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAI--P---------DFLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEEC--C---------GGGGGCTTCCEEECCSSEE
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcC--C---------HHHhCCCCCCEEeCCCCcc
Confidence            345556666666666323333 455554 66666666666666655444  4         5555666666666665554


Q ss_pred             c-ccccccc-cccCcEEEEEecCccccccccccccccccccccccccccc-ccccccccCceeeEEccccCCcceecccc
Q 039375           81 S-ILQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHE-RLRELKLKPDFTDICSMKLQAINNVEYIS  157 (311)
Q Consensus        81 ~-~lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~l~~L~l~~~~~~~~~~~~~  157 (311)
                      . .+|..+. +++|+.++++.+  .+.+.+|..  +          ..+. .++.+.+..+         . ++......
T Consensus       138 ~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~--l----------~~l~~~L~~L~L~~N---------~-l~~~~~~~  193 (313)
T 1ogq_A          138 SGTLPPSISSLPNLVGITFDGN--RISGAIPDS--Y----------GSFSKLFTSMTISRN---------R-LTGKIPPT  193 (313)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSS--CCEEECCGG--G----------GCCCTTCCEEECCSS---------E-EEEECCGG
T ss_pred             CCcCChHHhcCCCCCeEECcCC--cccCcCCHH--H----------hhhhhcCcEEECcCC---------e-eeccCChH
Confidence            4 4555443 556666655422  122222211  1          2222 3333333322         1 11111111


Q ss_pred             cccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeecc
Q 039375          158 QSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYG  236 (311)
Q Consensus       158 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~  236 (311)
                      ...+. |+.|++++ .+...                .+.....+++|+.|++++| +++. ..+ .+..+++|++|++++
T Consensus       194 ~~~l~-L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-~~~-~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLEGD----------------ASVLFGSDKNTQKIHLAKN-SLAF-DLG-KVGLSKNLNGLDLRN  253 (313)
T ss_dssp             GGGCC-CSEEECCSSEEEEC----------------CGGGCCTTSCCSEEECCSS-EECC-BGG-GCCCCTTCCEEECCS
T ss_pred             HhCCc-ccEEECcCCcccCc----------------CCHHHhcCCCCCEEECCCC-ceee-ecC-cccccCCCCEEECcC
Confidence            13343 77888765 12111                1122445677888888877 5654 222 256677888888887


Q ss_pred             CcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCe
Q 039375          237 CRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMK  299 (311)
Q Consensus       237 c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~  299 (311)
                      |...+.+        +.....+++|++|+++++. +....+  ....+++|+.+++.+++.+.
T Consensus       254 N~l~~~~--------p~~l~~l~~L~~L~Ls~N~-l~~~ip--~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          254 NRIYGTL--------PQGLTQLKFLHSLNVSFNN-LCGEIP--QGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             SCCEECC--------CGGGGGCTTCCEEECCSSE-EEEECC--CSTTGGGSCGGGTCSSSEEE
T ss_pred             CcccCcC--------ChHHhcCcCCCEEECcCCc-ccccCC--CCccccccChHHhcCCCCcc
Confidence            6643333        2223567778888887764 442222  12567777777777776555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=4.9e-16  Score=151.89  Aligned_cols=91  Identities=9%  Similarity=-0.093  Sum_probs=67.6

Q ss_pred             CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375          194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT  273 (311)
Q Consensus       194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~  273 (311)
                      |.....+++|+.|++++| +++. ..+..++.+++|+.|++++|...+.+        |...+.+++|++|+++++.--.
T Consensus       625 ~~~~~~l~~L~~LdLs~N-~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~i--------p~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYN-MLSG-YIPKEIGSMPYLFILNLGHNDISGSI--------PDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             CCSCSSSBCCCEEECCSS-CCBS-CCCGGGGGCTTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCEE
T ss_pred             chhhhccccccEEECcCC-cccc-cCCHHHhccccCCEEeCcCCccCCCC--------ChHHhCCCCCCEEECCCCcccC
Confidence            444566788999999999 7887 56677889999999999988765555        3344678888999998875322


Q ss_pred             eeccCCceecCCCccEEEEecCC
Q 039375          274 SFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       274 ~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .+  +.....+++|++|++++++
T Consensus       695 ~i--p~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          695 RI--PQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CC--CGGGGGCCCCSEEECCSSE
T ss_pred             cC--ChHHhCCCCCCEEECcCCc
Confidence            44  2245678889999998874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=2.3e-16  Score=149.98  Aligned_cols=243  Identities=14%  Similarity=0.143  Sum_probs=158.5

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccc-cCCCCCccEEEEeecCc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDE-LMLLPWLTTLEIDVKND   80 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~-l~~L~~L~~L~l~~~~~   80 (311)
                      ..++.+++|++|+|++ +.++.+|+..++.+++|++|++++|.+. .+  |         .. ++.+++|++|++++|.+
T Consensus        93 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l--~---------~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           93 YAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLS-SL--P---------RGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CC--C---------TTTTTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCC-CC--C---------HHHhccCCCCCEEEeeCCcC
Confidence            4788999999999999 6788887776699999999999999987 55  3         44 58899999999999988


Q ss_pred             cccccc-cc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc----------eeeEEccccC
Q 039375           81 SILQEG-FL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD----------FTDICSMKLQ  148 (311)
Q Consensus        81 ~~lp~~-~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----------l~~L~l~~~~  148 (311)
                      ..++.. +. +++|+.++++.+.  +.+ ++    .          +.++.++.+.+..+          ++.|.+..+.
T Consensus       160 ~~~~~~~~~~l~~L~~L~L~~N~--l~~-~~----~----------~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~  222 (597)
T 3oja_B          160 ERIEDDTFQATTSLQNLQLSSNR--LTH-VD----L----------SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS  222 (597)
T ss_dssp             CBCCTTTTTTCTTCCEEECTTSC--CSB-CC----G----------GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC
T ss_pred             CCCChhhhhcCCcCcEEECcCCC--CCC-cC----h----------hhhhhhhhhhcccCccccccCCchhheeeccCCc
Confidence            777653 43 8899999886332  111 11    1          23333444433332          3444444321


Q ss_pred             CcceecccccccccccceEEEec-eEecccccccCcccccccEEeC-------CCCcccccCccEEEEecCCCceeecCc
Q 039375          149 AINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKELIHLVTS  220 (311)
Q Consensus       149 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~l~~l~~~  220 (311)
                       ++.+..   ...++|+.|++++ .+... ........|..|.+++       |..+..+++|+.|++++| +++.+  +
T Consensus       223 -l~~~~~---~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l--~  294 (597)
T 3oja_B          223 -INVVRG---PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVAL--N  294 (597)
T ss_dssp             -CCEEEC---SCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEE--E
T ss_pred             -cccccc---ccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCC--C
Confidence             211111   2234566666655 11111 1111112333333222       445667899999999999 88874  3


Q ss_pred             cccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375          221 STAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       221 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .....+++|+.|++++|.. ..+        +.....+++|+.|.+.++. +..+    ....+++|++|++++++
T Consensus       295 ~~~~~l~~L~~L~Ls~N~l-~~i--------~~~~~~l~~L~~L~L~~N~-l~~~----~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          295 LYGQPIPTLKVLDLSHNHL-LHV--------ERNQPQFDRLENLYLDHNS-IVTL----KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CSSSCCTTCCEEECCSSCC-CCC--------GGGHHHHTTCSEEECCSSC-CCCC----CCCTTCCCSEEECCSSC
T ss_pred             cccccCCCCcEEECCCCCC-Ccc--------CcccccCCCCCEEECCCCC-CCCc----ChhhcCCCCEEEeeCCC
Confidence            4557799999999998764 333        2233568999999999875 5555    24578999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.69  E-value=1.3e-15  Score=140.74  Aligned_cols=249  Identities=19%  Similarity=0.154  Sum_probs=161.9

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      .++++|+|++ +.++.+++..+.++++|++|++++|.+....  |         ..++.+++|++|+++.|.+..+|...
T Consensus        32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~---------~~~~~l~~L~~L~L~~n~l~~~~~~~   99 (477)
T 2id5_A           32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVE--P---------GAFNNLFNLRTLGLRSNRLKLIPLGV   99 (477)
T ss_dssp             TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEEC--T---------TTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred             CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeC--h---------hhhhCCccCCEEECCCCcCCccCccc
Confidence            5899999999 7888886544599999999999999987443  5         78899999999999999999998764


Q ss_pred             --ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc---------------eeeEEccccCCc
Q 039375           88 --LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD---------------FTDICSMKLQAI  150 (311)
Q Consensus        88 --~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------------l~~L~l~~~~~~  150 (311)
                        .+++|+.++++.+.  +....|.  .+          .++++++.+.+..+               ++.|.+..+ .+
T Consensus       100 ~~~l~~L~~L~Ls~n~--i~~~~~~--~~----------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l  164 (477)
T 2id5_A          100 FTGLSNLTKLDISENK--IVILLDY--MF----------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NL  164 (477)
T ss_dssp             STTCTTCCEEECTTSC--CCEECTT--TT----------TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CC
T ss_pred             ccCCCCCCEEECCCCc--cccCChh--Hc----------cccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cC
Confidence              38999999886332  2111111  11          45566666666543               344444332 12


Q ss_pred             ceecccccccccccceEEEec-eEecccc-cccCcccccccEEeC-------CCCcccccCccEEEEecCCCceeecCcc
Q 039375          151 NNVEYISQSRITLTVSLFIRR-GIFNGRM-LRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKELIHLVTSS  221 (311)
Q Consensus       151 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~l~~l~~~~  221 (311)
                      +.+.......+++|+.|++.+ .+..... .......+..+.+.+       +.......+|+.|++++| +++. .+..
T Consensus       165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~-~~~~  242 (477)
T 2id5_A          165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTA-VPYL  242 (477)
T ss_dssp             SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCS-CCHH
T ss_pred             cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccc-cCHH
Confidence            111110014566777777765 1111111 111112344444433       222233448899999988 7876 5556


Q ss_pred             ccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          222 TAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       222 ~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      .+..+++|+.|++++|. +..+...       ....+++|++|.+.++. +..+.+ ..+..+++|++|+++++
T Consensus       243 ~~~~l~~L~~L~Ls~n~-l~~~~~~-------~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          243 AVRHLVYLRFLNLSYNP-ISTIEGS-------MLHELLRLQEIQLVGGQ-LAVVEP-YAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             HHTTCTTCCEEECCSSC-CCEECTT-------SCTTCTTCCEEECCSSC-CSEECT-TTBTTCTTCCEEECCSS
T ss_pred             HhcCccccCeeECCCCc-CCccChh-------hccccccCCEEECCCCc-cceECH-HHhcCcccCCEEECCCC
Confidence            67889999999999776 4444321       22567899999999874 566532 24557899999999887

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.68  E-value=5e-16  Score=142.71  Aligned_cols=224  Identities=17%  Similarity=0.151  Sum_probs=153.1

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      .+|++|+|++ +.++.++++.++++++|++|++++|.+. .+. |         ..+..+++|++|+++.|.+..+|...
T Consensus        75 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~  142 (452)
T 3zyi_A           75 SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE-V---------GAFNGLASLNTLELFDNWLTVIPSGA  142 (452)
T ss_dssp             TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC-EEC-T---------TTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred             CCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccC-CcC-h---------hhccCcccCCEEECCCCcCCccChhh
Confidence            5899999999 7888785554599999999999999987 442 4         67888999999999999988888764


Q ss_pred             -c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           88 -L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        88 -~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                       . +++|+.++++.+..   ..+|.. .+          .+++++         +.|.+..+..++.+.......+++|+
T Consensus       143 ~~~l~~L~~L~L~~N~l---~~~~~~-~~----------~~l~~L---------~~L~l~~~~~l~~i~~~~~~~l~~L~  199 (452)
T 3zyi_A          143 FEYLSKLRELWLRNNPI---ESIPSY-AF----------NRVPSL---------MRLDLGELKKLEYISEGAFEGLFNLK  199 (452)
T ss_dssp             SSSCTTCCEEECCSCCC---CEECTT-TT----------TTCTTC---------CEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred             hcccCCCCEEECCCCCc---ceeCHh-HH----------hcCCcc---------cEEeCCCCCCccccChhhccCCCCCC
Confidence             3 88999998863321   111100 01          333433         45555555555554322225677888


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      .|++++ .+...                  .....+++|+.|++++| ++++ ..+..+..+++|+.|++++|. +..+.
T Consensus       200 ~L~L~~n~l~~~------------------~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~  258 (452)
T 3zyi_A          200 YLNLGMCNIKDM------------------PNLTPLVGLEELEMSGN-HFPE-IRPGSFHGLSSLKKLWVMNSQ-VSLIE  258 (452)
T ss_dssp             EEECTTSCCSSC------------------CCCTTCTTCCEEECTTS-CCSE-ECGGGGTTCTTCCEEECTTSC-CCEEC
T ss_pred             EEECCCCccccc------------------ccccccccccEEECcCC-cCcc-cCcccccCccCCCEEEeCCCc-CceEC
Confidence            888876 11111                  11445778999999998 7887 556778889999999998765 34432


Q ss_pred             ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375          245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .       .....+++|++|++.++ +++.+... ....+++|++|++.+++
T Consensus       259 ~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          259 R-------NAFDGLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             T-------TTTTTCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred             H-------HHhcCCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence            2       12356788899999887 46665321 23467888999887754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=1.6e-16  Score=156.01  Aligned_cols=85  Identities=25%  Similarity=0.333  Sum_probs=62.7

Q ss_pred             CCccCCCCCccEEecCCCCCCcc------------------cChhHHH--hccccceEEeccccceeeeecccccccccc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKV------------------IAPNVIS--SLIRLEELCMGNCSVEWEVERANTERSNAS   60 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~------------------lp~~i~~--~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~   60 (311)
                      |..+++|++|++|+|++ +.++.                  +|+++ +  ++++|++|++++|.+.+.+  |        
T Consensus       441 P~~l~~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~l-~f~~L~~L~~L~Ls~N~l~~~i--P--------  508 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEEL-SWSNLKDLTDVELYNCPNMTQL--P--------  508 (876)
T ss_dssp             CGGGGGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEESCTTCCSC--C--------
T ss_pred             hHHHhcCCCCCEEECcC-CcCCCCcccccccccccccccccCChhh-hhccCCCCCEEECcCCCCCccC--h--------
Confidence            56678888888888888 55665                  78776 6  8888888888888876666  6        


Q ss_pred             ccccCCCCCccEEEEeecC-cc--ccccccc-cc-------cCcEEEEE
Q 039375           61 LDELMLLPWLTTLEIDVKN-DS--ILQEGFL-AR-------KLERFKIS   98 (311)
Q Consensus        61 l~~l~~L~~L~~L~l~~~~-~~--~lp~~~~-l~-------~L~~l~~~   98 (311)
                       ..++.+++|+.|+++.|. ..  .+|..+. +.       +|+.++++
T Consensus       509 -~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls  556 (876)
T 4ecn_A          509 -DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG  556 (876)
T ss_dssp             -GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred             -HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence             777788888888887775 54  3666553 33       77777765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.68  E-value=5.4e-16  Score=137.38  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=47.1

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      ++.+++|++|++++ +.++.+|+ + +++++|++|++++|.+. .+            ..++.+++|++|+++++.+..+
T Consensus        62 ~~~~~~L~~L~l~~-n~i~~~~~-~-~~l~~L~~L~L~~n~i~-~~------------~~~~~l~~L~~L~l~~n~i~~~  125 (347)
T 4fmz_A           62 IEYLTNLEYLNLNG-NQITDISP-L-SNLVKLTNLYIGTNKIT-DI------------SALQNLTNLRELYLNEDNISDI  125 (347)
T ss_dssp             GGGCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CC------------GGGTTCTTCSEEECTTSCCCCC
T ss_pred             hhhcCCccEEEccC-Cccccchh-h-hcCCcCCEEEccCCccc-Cc------------hHHcCCCcCCEEECcCCcccCc
Confidence            45566666666666 35555555 3 66666666666666554 33            4456666666666666666665


Q ss_pred             ccccccccCcEEEEE
Q 039375           84 QEGFLARKLERFKIS   98 (311)
Q Consensus        84 p~~~~l~~L~~l~~~   98 (311)
                      +....+++|+.++++
T Consensus       126 ~~~~~l~~L~~L~l~  140 (347)
T 4fmz_A          126 SPLANLTKMYSLNLG  140 (347)
T ss_dssp             GGGTTCTTCCEEECT
T ss_pred             hhhccCCceeEEECC
Confidence            553336666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.68  E-value=9.9e-16  Score=145.66  Aligned_cols=86  Identities=17%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++++++|++|++++ +.+..++++.++++++|++|++++|.+....  |         ..++.+++|++|++++|.+
T Consensus        50 ~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~i  117 (606)
T 3t6q_A           50 NTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMA--E---------TALSGPKALKHLFFIQTGI  117 (606)
T ss_dssp             TTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEEC--T---------TTTSSCTTCCEEECTTSCC
T ss_pred             hhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccC--h---------hhhcccccccEeeccccCc
Confidence            34677888888888888 5666664333388888888888888876333  4         5666777777777776666


Q ss_pred             cccc-cccc-cccCcEEEEE
Q 039375           81 SILQ-EGFL-ARKLERFKIS   98 (311)
Q Consensus        81 ~~lp-~~~~-l~~L~~l~~~   98 (311)
                      ..++ ..+. +++|+.++++
T Consensus       118 ~~l~~~~~~~l~~L~~L~L~  137 (606)
T 3t6q_A          118 SSIDFIPLHNQKTLESLYLG  137 (606)
T ss_dssp             SCGGGSCCTTCTTCCEEECC
T ss_pred             ccCCcchhccCCcccEEECC
Confidence            6553 3332 6666666664

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=5e-16  Score=137.57  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=59.5

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-ccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN-DSI   82 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~-~~~   82 (311)
                      ++.+++|++|++++ +.++.+|. + +++++|++|++++|.+. .+            ..+..+++|+.|+++.+. ...
T Consensus        84 ~~~l~~L~~L~L~~-n~i~~~~~-~-~~l~~L~~L~l~~n~i~-~~------------~~~~~l~~L~~L~l~~n~~~~~  147 (347)
T 4fmz_A           84 LSNLVKLTNLYIGT-NKITDISA-L-QNLTNLRELYLNEDNIS-DI------------SPLANLTKMYSLNLGANHNLSD  147 (347)
T ss_dssp             GTTCTTCCEEECCS-SCCCCCGG-G-TTCTTCSEEECTTSCCC-CC------------GGGTTCTTCCEEECTTCTTCCC
T ss_pred             hhcCCcCCEEEccC-CcccCchH-H-cCCCcCCEEECcCCccc-Cc------------hhhccCCceeEEECCCCCCccc
Confidence            67889999999999 57788764 4 89999999999999876 44            337778888888887774 444


Q ss_pred             cccccccccCcEEEEE
Q 039375           83 LQEGFLARKLERFKIS   98 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~   98 (311)
                      ++....+++|+.+.+.
T Consensus       148 ~~~~~~l~~L~~L~l~  163 (347)
T 4fmz_A          148 LSPLSNMTGLNYLTVT  163 (347)
T ss_dssp             CGGGTTCTTCCEEECC
T ss_pred             ccchhhCCCCcEEEec
Confidence            4443347778887775

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.67  E-value=7.4e-16  Score=150.59  Aligned_cols=252  Identities=17%  Similarity=0.103  Sum_probs=133.7

Q ss_pred             CCCCccEEecCCCCCCc-ccChhHHHh-ccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375            6 QVTKLRLLDLRDCFHLK-VIAPNVISS-LIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I   82 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~-~lp~~i~~~-L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~   82 (311)
                      .+++|++|++++| .+. .+|..+ .+ +++|++|++++|.+.+.+  |         ..++.+++|++|+++.|... .
T Consensus       267 ~l~~L~~L~L~~n-~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~--p---------~~~~~l~~L~~L~L~~n~l~~~  333 (768)
T 3rgz_A          267 PLKSLQYLSLAEN-KFTGEIPDFL-SGACDTLTGLDLSGNHFYGAV--P---------PFFGSCSLLESLALSSNNFSGE  333 (768)
T ss_dssp             CCTTCCEEECCSS-EEEESCCCCS-CTTCTTCSEEECCSSEEEECC--C---------GGGGGCTTCCEEECCSSEEEEE
T ss_pred             ccCCCCEEECcCC-ccCCccCHHH-HhhcCcCCEEECcCCcCCCcc--c---------hHHhcCCCccEEECCCCcccCc
Confidence            4556666666663 333 555554 33 366666666666555444  4         55555666666666555543 4


Q ss_pred             cccc-cc-cccCcEEEEEecCccccccccccccccccccccccccccc-ccccccccCc-----------------eeeE
Q 039375           83 LQEG-FL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHE-RLRELKLKPD-----------------FTDI  142 (311)
Q Consensus        83 lp~~-~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~-----------------l~~L  142 (311)
                      +|.. +. +++|+.++++.  +.+.+.+|...            .++. .++.+.+..+                 ++.|
T Consensus       334 ip~~~l~~l~~L~~L~Ls~--n~l~~~~p~~l------------~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          334 LPMDTLLKMRGLKVLDLSF--NEFSGELPESL------------TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCHHHHTTCTTCCEEECCS--SEEEECCCTTH------------HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             CCHHHHhcCCCCCEEeCcC--CccCccccHHH------------HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            5543 22 55555555531  12222222111            1111 2222222221                 2333


Q ss_pred             EccccCCcceecccccccccccceEEEec-eEec-ccccccCcccccccEEeC-------CCCcccccCccEEEEecCCC
Q 039375          143 CSMKLQAINNVEYISQSRITLTVSLFIRR-GIFN-GRMLRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKE  213 (311)
Q Consensus       143 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~  213 (311)
                      .+..+. ++.........+++|+.|++++ .+.. .+........+..+.+.+       |.....+++|+.|++++| +
T Consensus       400 ~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~  477 (768)
T 3rgz_A          400 YLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-D  477 (768)
T ss_dssp             ECCSSE-EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-C
T ss_pred             ECCCCc-cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC-c
Confidence            333321 1111111115566777777765 2221 111111112333333221       444566788889999888 7


Q ss_pred             ceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEe
Q 039375          214 LIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVI  293 (311)
Q Consensus       214 l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~  293 (311)
                      ++. ..+..+..+++|++|++++|...+.+        +.....+++|++|++.++.--..+  +.....+++|++|+++
T Consensus       478 l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          478 LTG-EIPSGLSNCTNLNWISLSNNRLTGEI--------PKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLN  546 (768)
T ss_dssp             CCS-CCCGGGGGCTTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECC
T ss_pred             ccC-cCCHHHhcCCCCCEEEccCCccCCcC--------ChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECC
Confidence            776 45667788889999999888754444        223456888999999888533344  2355678899999998


Q ss_pred             cCCC
Q 039375          294 GCPK  297 (311)
Q Consensus       294 ~c~~  297 (311)
                      +|+-
T Consensus       547 ~N~l  550 (768)
T 3rgz_A          547 TNLF  550 (768)
T ss_dssp             SSEE
T ss_pred             CCcc
Confidence            8743

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.67  E-value=5.9e-16  Score=148.17  Aligned_cols=84  Identities=12%  Similarity=0.113  Sum_probs=41.7

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc------CceEEeccCCcccccccccccccceeeccccccc
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR------AMTEVVINDKEGVDIEEIVFSKLKALILCDLDSL  272 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~------~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l  272 (311)
                      .+++|+.|++++| +++. . +..+..+++|+.|++++|.      ..+.+        +.....+++|++|+++++. +
T Consensus       511 ~l~~L~~L~Ls~N-~l~~-i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~-l  578 (636)
T 4eco_A          511 TLPYLVGIDLSYN-SFSK-F-PTQPLNSSTLKGFGIRNQRDAQGNRTLREW--------PEGITLCPSLTQLQIGSND-I  578 (636)
T ss_dssp             TCTTCCEEECCSS-CCSS-C-CCGGGGCSSCCEEECCSCBCTTCCBCCCCC--------CTTGGGCSSCCEEECCSSC-C
T ss_pred             cCCCcCEEECCCC-CCCC-c-ChhhhcCCCCCEEECCCCcccccCcccccC--------hHHHhcCCCCCEEECCCCc-C
Confidence            4455555555555 4444 1 2334445555555554322      11111        2233456667777776654 3


Q ss_pred             ceeccCCceecCCCccEEEEecCCCC
Q 039375          273 TSFCSANYTFKFPSLEYLEVIGCPKM  298 (311)
Q Consensus       273 ~~~~~~~~~~~~~~L~~L~i~~c~~l  298 (311)
                      +.+..  .  .+++|++|++++|+-.
T Consensus       579 ~~ip~--~--~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          579 RKVNE--K--ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             CBCCS--C--CCTTCCEEECCSCTTC
T ss_pred             CccCH--h--HhCcCCEEECcCCCCc
Confidence            55522  1  2367777777776543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.67  E-value=1e-15  Score=145.55  Aligned_cols=87  Identities=18%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..|+++++|++|++++ +.+..+++..++++++|++|++++|.+. .+. |         ..++.+++|++|+++.|.+
T Consensus        74 ~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~-~---------~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A           74 EDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQTGIS-SID-F---------IPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             TTTTTTCTTCCEEECTT-CCCSEECTTTTSSCTTCCEEECTTSCCS-CGG-G---------SCCTTCTTCCEEECCSSCC
T ss_pred             hhhccCccccCeeeCCC-CcccccChhhhcccccccEeeccccCcc-cCC-c---------chhccCCcccEEECCCCcc
Confidence            45688999999999999 6777664433499999999999999887 332 3         5577888888888888776


Q ss_pred             ccc--ccccccccCcEEEEEe
Q 039375           81 SIL--QEGFLARKLERFKISI   99 (311)
Q Consensus        81 ~~l--p~~~~l~~L~~l~~~~   99 (311)
                      ..+  |..+.+++|+.++++.
T Consensus       142 ~~~~~~~~~~l~~L~~L~L~~  162 (606)
T 3t6q_A          142 SSIKLPKGFPTEKLKVLDFQN  162 (606)
T ss_dssp             CCCCCCTTCCCTTCCEEECCS
T ss_pred             cccCcccccCCcccCEEEccc
Confidence            655  4555577788777753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.67  E-value=1.1e-15  Score=140.08  Aligned_cols=224  Identities=17%  Similarity=0.175  Sum_probs=148.8

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-   86 (311)
                      .++++|+|++ +.++.+++..++++++|++|++++|.+. .+. +         ..+..+++|++|+++.|.+..+|.. 
T Consensus        64 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~  131 (440)
T 3zyj_A           64 TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIR-TIE-I---------GAFNGLANLNTLELFDNRLTTIPNGA  131 (440)
T ss_dssp             TTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCC-EEC-G---------GGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred             CCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCC-ccC-h---------hhccCCccCCEEECCCCcCCeeCHhH
Confidence            5789999999 7888886554599999999999999887 442 4         6788899999999999998888874 


Q ss_pred             c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                      + .+++|+.++++.+.   +..+|.. .+          ..++++         +.|.+..+..+..+.......+++|+
T Consensus       132 ~~~l~~L~~L~L~~N~---i~~~~~~-~~----------~~l~~L---------~~L~l~~~~~l~~i~~~~~~~l~~L~  188 (440)
T 3zyj_A          132 FVYLSKLKELWLRNNP---IESIPSY-AF----------NRIPSL---------RRLDLGELKRLSYISEGAFEGLSNLR  188 (440)
T ss_dssp             SCSCSSCCEEECCSCC---CCEECTT-TT----------TTCTTC---------CEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred             hhccccCceeeCCCCc---ccccCHH-Hh----------hhCccc---------CEeCCCCCCCcceeCcchhhcccccC
Confidence            3 38899999886332   1111100 01          333433         44555555555444322125677888


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      .|++++ .+..++                  ....+++|+.|++++| +++. ..+..+..+++|+.|++++|. +..+.
T Consensus       189 ~L~L~~n~l~~~~------------------~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~  247 (440)
T 3zyj_A          189 YLNLAMCNLREIP------------------NLTPLIKLDELDLSGN-HLSA-IRPGSFQGLMHLQKLWMIQSQ-IQVIE  247 (440)
T ss_dssp             EEECTTSCCSSCC------------------CCTTCSSCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred             eecCCCCcCcccc------------------ccCCCcccCEEECCCC-ccCc-cChhhhccCccCCEEECCCCc-eeEEC
Confidence            888876 111111                  1445678888888888 7887 555677888888888888764 44442


Q ss_pred             ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375          245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .       .....+++|++|+++++ +++.+... ....+++|++|++.++|
T Consensus       248 ~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          248 R-------NAFDNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             T-------TSSTTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred             h-------hhhcCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence            2       12245788888888876 46655321 23457888888887653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=2.8e-15  Score=142.55  Aligned_cols=43  Identities=19%  Similarity=0.359  Sum_probs=23.9

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE   46 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~   46 (311)
                      .++++++|++|++++ +.++.++++.++++++|++|++++|.+.
T Consensus        51 ~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n~l~   93 (606)
T 3vq2_A           51 SFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQ   93 (606)
T ss_dssp             TTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             hccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCCccc
Confidence            455566666666666 3555553332356666666666666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.66  E-value=6.5e-16  Score=142.13  Aligned_cols=78  Identities=21%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      +++++++|++|++++ +.++.+| ++ +++++|++|++++|.+. .+            . ++.+++|++|+++.|.+..
T Consensus        37 ~~~~l~~L~~L~Ls~-n~l~~~~-~l-~~l~~L~~L~Ls~n~l~-~~------------~-~~~l~~L~~L~Ls~N~l~~   99 (457)
T 3bz5_A           37 SEEQLATLTSLDCHN-SSITDMT-GI-EKLTGLTKLICTSNNIT-TL------------D-LSQNTNLTYLACDSNKLTN   99 (457)
T ss_dssp             EHHHHTTCCEEECCS-SCCCCCT-TG-GGCTTCSEEECCSSCCS-CC------------C-CTTCTTCSEEECCSSCCSC
T ss_pred             ChhHcCCCCEEEccC-CCcccCh-hh-cccCCCCEEEccCCcCC-eE------------c-cccCCCCCEEECcCCCCce
Confidence            456788888888888 5777777 44 88888888888888775 33            2 5667777777777777666


Q ss_pred             cccccccccCcEEEEE
Q 039375           83 LQEGFLARKLERFKIS   98 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~   98 (311)
                      ++ ...+++|+.++++
T Consensus       100 ~~-~~~l~~L~~L~L~  114 (457)
T 3bz5_A          100 LD-VTPLTKLTYLNCD  114 (457)
T ss_dssp             CC-CTTCTTCCEEECC
T ss_pred             ee-cCCCCcCCEEECC
Confidence            64 2236677777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.65  E-value=1.5e-15  Score=139.38  Aligned_cols=81  Identities=17%  Similarity=0.158  Sum_probs=66.5

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc-ccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL-QEG   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l-p~~   86 (311)
                      ++|++|+|++ +.++.+++..++++++|++|++++|.+...+. |         ..++.+++|++|++++|.+..+ |..
T Consensus        30 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           30 AHVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-N---------NTFRGLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             TTCCEEECCS-SCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-T---------TTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred             CccCEEEecC-CccCcCChhHhccCccccEEECcCCcccceEC-c---------ccccccccCCEEeCCCCccCccChhh
Confidence            6899999999 68887744434999999999999998865553 3         6788999999999999997766 556


Q ss_pred             cc-cccCcEEEEEe
Q 039375           87 FL-ARKLERFKISI   99 (311)
Q Consensus        87 ~~-l~~L~~l~~~~   99 (311)
                      +. +++|+.++++.
T Consensus        99 ~~~l~~L~~L~L~~  112 (455)
T 3v47_A           99 FNGLANLEVLTLTQ  112 (455)
T ss_dssp             TTTCTTCCEEECTT
T ss_pred             ccCcccCCEEeCCC
Confidence            64 89999998863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=2.5e-15  Score=132.28  Aligned_cols=239  Identities=13%  Similarity=0.100  Sum_probs=130.5

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      ++|++|++++ +.++.+++..++++++|++|++++|.+....  |         ..++.+++|++|+++.|.+..+|..+
T Consensus        52 ~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~Ls~n~l~~l~~~~  119 (330)
T 1xku_A           52 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKIS--P---------GAFAPLVKLERLYLSKNQLKELPEKM  119 (330)
T ss_dssp             TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--T---------TTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred             CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeC--H---------HHhcCCCCCCEEECCCCcCCccChhh
Confidence            4677888888 5677776643478888888888888776333  4         66777888888888877777777766


Q ss_pred             ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcce--ecccccccccccc
Q 039375           88 LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINN--VEYISQSRITLTV  165 (311)
Q Consensus        88 ~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~--~~~~~~~~~~~L~  165 (311)
                      . ++|+.++++.+.  + ..++.. .+          .++++++.+.+..         +. ++.  ........+++|+
T Consensus       120 ~-~~L~~L~l~~n~--l-~~~~~~-~~----------~~l~~L~~L~l~~---------n~-l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A          120 P-KTLQELRVHENE--I-TKVRKS-VF----------NGLNQMIVVELGT---------NP-LKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             C-TTCCEEECCSSC--C-CBBCHH-HH----------TTCTTCCEEECCS---------SC-CCGGGBCTTGGGGCTTCC
T ss_pred             c-ccccEEECCCCc--c-cccCHh-Hh----------cCCccccEEECCC---------Cc-CCccCcChhhccCCCCcC
Confidence            5 677777765222  1 111100 01          3334444444332         11 111  0000015567777


Q ss_pred             eEEEec-eEecccccccCcccccccEEeC-------CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC  237 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c  237 (311)
                      +|++++ .+..++...  ...+..+.+.+       +.....+++|+.|++++| ++++ .++..+..+++|+.|++++|
T Consensus       175 ~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          175 YIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISA-VDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             EEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCE-ECTTTGGGSTTCCEEECCSS
T ss_pred             EEECCCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCce-eChhhccCCCCCCEEECCCC
Confidence            777765 222221111  12333333221       333455667777777777 6666 34445666777777777766


Q ss_pred             cCceEEeccCCcccccccccccccceeecccccccceeccCCc-----eecCCCccEEEEecCCC
Q 039375          238 RAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANY-----TFKFPSLEYLEVIGCPK  297 (311)
Q Consensus       238 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~-----~~~~~~L~~L~i~~c~~  297 (311)
                      . +..+        +.....+++|++|.+.++. ++.+.....     ....++++.|++.+.+-
T Consensus       251 ~-l~~l--------p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          251 K-LVKV--------PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             C-CSSC--------CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             c-CccC--------ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence            4 2232        1123456777777777653 444422110     01235677777776653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=2.6e-15  Score=148.14  Aligned_cols=87  Identities=21%  Similarity=0.238  Sum_probs=57.9

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++++++|++|+|++|..+..++++.++++++|++|++++|.+....  |         ..++.+++|++|+++.|..
T Consensus        41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~--p---------~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH--P---------DAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC--T---------TSSCSCSSCCCEECTTCCC
T ss_pred             hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC--H---------hHccCCcccCEeeCcCCCC
Confidence            3467788888888888866667774443488888888888888876443  5         5666667777777766664


Q ss_pred             cc-cccc--c-ccccCcEEEEE
Q 039375           81 SI-LQEG--F-LARKLERFKIS   98 (311)
Q Consensus        81 ~~-lp~~--~-~l~~L~~l~~~   98 (311)
                      .. +|..  + .+++|+.++++
T Consensus       110 ~~~~~~~~~~~~L~~L~~L~Ls  131 (844)
T 3j0a_A          110 SDAVLKDGYFRNLKALTRLDLS  131 (844)
T ss_dssp             SSCCSTTCCCSSCSSCCEEEEE
T ss_pred             CcccccCccccccCCCCEEECC
Confidence            43 3332  2 26666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=4.3e-15  Score=137.03  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      +..+++|++|++++ +.++.+|+ + +++++|++|++++|.+. .+  +         . ++.+++|++|+++.|.+..+
T Consensus        64 ~~~l~~L~~L~Ls~-n~l~~~~~-~-~~l~~L~~L~l~~n~l~-~~--~---------~-~~~l~~L~~L~L~~n~l~~~  127 (466)
T 1o6v_A           64 VEYLNNLTQINFSN-NQLTDITP-L-KNLTKLVDILMNNNQIA-DI--T---------P-LANLTNLTGLTLFNNQITDI  127 (466)
T ss_dssp             GGGCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CC--G---------G-GTTCTTCCEEECCSSCCCCC
T ss_pred             hhhhcCCCEEECCC-CccCCchh-h-hccccCCEEECCCCccc-cC--h---------h-hcCCCCCCEEECCCCCCCCC
Confidence            56677888888888 56777766 4 77888888888877765 33  2         2 55666666666666665555


Q ss_pred             ccccccccCcEEEEEe
Q 039375           84 QEGFLARKLERFKISI   99 (311)
Q Consensus        84 p~~~~l~~L~~l~~~~   99 (311)
                      +....+++|+.++++.
T Consensus       128 ~~~~~l~~L~~L~l~~  143 (466)
T 1o6v_A          128 DPLKNLTNLNRLELSS  143 (466)
T ss_dssp             GGGTTCTTCSEEEEEE
T ss_pred             hHHcCCCCCCEEECCC
Confidence            5422356666666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.5e-15  Score=149.09  Aligned_cols=46  Identities=15%  Similarity=0.257  Sum_probs=29.5

Q ss_pred             CCccC--CCCCccEEecCCCCCCcccChhHHHhccccceEEecccc-cee
Q 039375            1 PKALG--QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCS-VEW   47 (311)
Q Consensus         1 P~~i~--~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~-~~~   47 (311)
                      |..++  ++++|++|+|++|...+.+|..+ ++|++|++|++++|. +.+
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg  530 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISA  530 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCH
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCccc
Confidence            44555  67777777777755555666665 667777777777665 543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.64  E-value=3.5e-15  Score=137.59  Aligned_cols=237  Identities=16%  Similarity=0.162  Sum_probs=132.1

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      ++++++|++|++++ +.+..+++ + +++++|++|++++|.+. .+            ..++.+++|++|+++.|.+..+
T Consensus        86 ~~~l~~L~~L~l~~-n~l~~~~~-~-~~l~~L~~L~L~~n~l~-~~------------~~~~~l~~L~~L~l~~n~l~~~  149 (466)
T 1o6v_A           86 LKNLTKLVDILMNN-NQIADITP-L-ANLTNLTGLTLFNNQIT-DI------------DPLKNLTNLNRLELSSNTISDI  149 (466)
T ss_dssp             GTTCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CC------------GGGTTCTTCSEEEEEEEEECCC
T ss_pred             hhccccCCEEECCC-CccccChh-h-cCCCCCCEEECCCCCCC-CC------------hHHcCCCCCCEEECCCCccCCC
Confidence            66778888888888 56777766 4 88888888888888775 44            3367788888888887777776


Q ss_pred             ccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-------------eeeEEccccCCc
Q 039375           84 QEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-------------FTDICSMKLQAI  150 (311)
Q Consensus        84 p~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------------l~~L~l~~~~~~  150 (311)
                      +....+++|+.+.+....    ..++   .+          +++++++.+.+..+             ++.|.+..+. +
T Consensus       150 ~~~~~l~~L~~L~l~~~~----~~~~---~~----------~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l  211 (466)
T 1o6v_A          150 SALSGLTSLQQLSFGNQV----TDLK---PL----------ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-I  211 (466)
T ss_dssp             GGGTTCTTCSEEEEEESC----CCCG---GG----------TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-C
T ss_pred             hhhccCCcccEeecCCcc----cCch---hh----------ccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc-c
Confidence            653347788888775211    1111   11          34444555544432             3333333221 1


Q ss_pred             ceecccccccccccceEEEec-eEecccccccCcccccccEEeC-----CCCcccccCccEEEEecCCCceeecCccccc
Q 039375          151 NNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-----PSSSVSFRNLTKLVAVGCKELIHLVTSSTAK  224 (311)
Q Consensus       151 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-----~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~  224 (311)
                      +....  ...+++|+.|++++ .+.....+. ....+..+.+.+     ......+++|+.|++++| +++.+ +  .+.
T Consensus       212 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~-~--~~~  284 (466)
T 1o6v_A          212 SDITP--LGILTNLDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNI-S--PLA  284 (466)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGGGG-GCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCC-G--GGT
T ss_pred             ccccc--ccccCCCCEEECCCCCcccchhhh-cCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCcc-c--ccc
Confidence            11100  03455566666554 111111111 111233333222     122445566667777666 55552 2  155


Q ss_pred             cCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          225 TLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       225 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      .+++|+.|++++|.. ..+.         ....+++|++|.+.++. +..+.+   ...+++|++|++.+|
T Consensus       285 ~l~~L~~L~L~~n~l-~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          285 GLTALTNLELNENQL-EDIS---------PISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             TCTTCSEEECCSSCC-SCCG---------GGGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS
T ss_pred             CCCccCeEEcCCCcc-cCch---------hhcCCCCCCEEECcCCc-CCCchh---hccCccCCEeECCCC
Confidence            666777777766542 2221         13567888888888873 555432   457888888888876

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.64  E-value=4.3e-15  Score=141.23  Aligned_cols=89  Identities=15%  Similarity=-0.013  Sum_probs=50.7

Q ss_pred             cccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceec
Q 039375          197 SVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFC  276 (311)
Q Consensus       197 ~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~  276 (311)
                      ...+++|+.|++++| +++. ..+..+..+++|+.|++++|...+.+.       +.....+++|++|.++++. ++.+.
T Consensus       420 ~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~Ls~n~-l~~~~  489 (606)
T 3vq2_A          420 FLSLEKLLYLDISYT-NTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTL-------SNVFANTTNLTFLDLSKCQ-LEQIS  489 (606)
T ss_dssp             TTTCTTCCEEECTTS-CCEE-CCTTTTTTCTTCCEEECTTCEEGGGEE-------CSCCTTCTTCCEEECTTSC-CCEEC
T ss_pred             hhccccCCEEECcCC-CCCc-cchhhhcCCCCCCEEECCCCcCCCcch-------HHhhccCCCCCEEECCCCc-CCccC
Confidence            344556666666666 4554 334455556666666666554332211       1123456778888887773 55543


Q ss_pred             cCCceecCCCccEEEEecCC
Q 039375          277 SANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       277 ~~~~~~~~~~L~~L~i~~c~  296 (311)
                      + .....+++|++|++++|.
T Consensus       490 ~-~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          490 W-GVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             T-TTTTTCTTCCEEECCSSC
T ss_pred             h-hhhcccccCCEEECCCCc
Confidence            2 134567788888888774

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=1.3e-15  Score=140.02  Aligned_cols=77  Identities=17%  Similarity=0.140  Sum_probs=65.3

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++.+++|++|++++ +.++.+|  + +.+++|++|++++|.+. .+             .++.+++|++|+++.|.+..
T Consensus        59 ~l~~l~~L~~L~Ls~-n~l~~~~--~-~~l~~L~~L~Ls~N~l~-~~-------------~~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           59 GIEKLTGLTKLICTS-NNITTLD--L-SQNTNLTYLACDSNKLT-NL-------------DVTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             TGGGCTTCSEEECCS-SCCSCCC--C-TTCTTCSEEECCSSCCS-CC-------------CCTTCTTCCEEECCSSCCSC
T ss_pred             hhcccCCCCEEEccC-CcCCeEc--c-ccCCCCCEEECcCCCCc-ee-------------ecCCCCcCCEEECCCCcCCe
Confidence            578899999999999 6788887  4 99999999999999876 33             27789999999999999888


Q ss_pred             cccccccccCcEEEEE
Q 039375           83 LQEGFLARKLERFKIS   98 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~   98 (311)
                      +| .-.+++|+.++++
T Consensus       121 l~-~~~l~~L~~L~l~  135 (457)
T 3bz5_A          121 LD-VSQNPLLTYLNCA  135 (457)
T ss_dssp             CC-CTTCTTCCEEECT
T ss_pred             ec-CCCCCcCCEEECC
Confidence            76 2248899999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.64  E-value=2.6e-15  Score=130.72  Aligned_cols=229  Identities=15%  Similarity=0.155  Sum_probs=147.9

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      ++|++|++++ +.++.+|.++++++++|++|++++|.+...-..|         ..+..+++|++|++++|.+..+|..+
T Consensus        28 ~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~~~~L~~L~Ls~n~i~~l~~~~   97 (306)
T 2z66_A           28 SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS---------QSDFGTTSLKYLDLSFNGVITMSSNF   97 (306)
T ss_dssp             TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE---------HHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred             CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcc---------cccccccccCEEECCCCccccChhhc
Confidence            5899999999 6889999886699999999999999886221113         55567899999999999988888876


Q ss_pred             c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           88 L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        88 ~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                      . +++|+.++++.+.   ...++....+          ..+++++.+.+..+         . ++.........+++|++
T Consensus        98 ~~l~~L~~L~l~~n~---l~~~~~~~~~----------~~l~~L~~L~l~~n---------~-l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           98 LGLEQLEHLDFQHSN---LKQMSEFSVF----------LSLRNLIYLDISHT---------H-TRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             ETCTTCCEEECTTSE---EESSTTTTTT----------TTCTTCCEEECTTS---------C-CEECSTTTTTTCTTCCE
T ss_pred             CCCCCCCEEECCCCc---ccccccchhh----------hhccCCCEEECCCC---------c-CCccchhhcccCcCCCE
Confidence            4 8999999875221   1111110011          34455555444332         1 11111111156778888


Q ss_pred             EEEece-EecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEec
Q 039375          167 LFIRRG-IFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVI  245 (311)
Q Consensus       167 L~l~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~  245 (311)
                      |++++. +...               ..|.....+++|+.|++++| ++++ ..+..+..+++|+.|++++|.. ..+..
T Consensus       155 L~l~~n~l~~~---------------~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~  216 (306)
T 2z66_A          155 LKMAGNSFQEN---------------FLPDIFTELRNLTFLDLSQC-QLEQ-LSPTAFNSLSSLQVLNMSHNNF-FSLDT  216 (306)
T ss_dssp             EECTTCEEGGG---------------EECSCCTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECTTSCC-SBCCS
T ss_pred             EECCCCccccc---------------cchhHHhhCcCCCEEECCCC-CcCC-cCHHHhcCCCCCCEEECCCCcc-CccCh
Confidence            888761 1110               01223556788999999998 7887 4556778889999999987753 33211


Q ss_pred             cCCcccccccccccccceeecccccccceeccCCceecC-CCccEEEEecCC
Q 039375          246 NDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKF-PSLEYLEVIGCP  296 (311)
Q Consensus       246 ~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~-~~L~~L~i~~c~  296 (311)
                             .....+++|++|+++++. +...... ....+ ++|++|++++++
T Consensus       217 -------~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          217 -------FPYKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             -------GGGTTCTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred             -------hhccCcccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence                   112457888999998874 4444221 23445 488999887753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.64  E-value=1.4e-15  Score=133.96  Aligned_cols=78  Identities=18%  Similarity=0.168  Sum_probs=55.6

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      ++|++|++++ +.++.++++.++++++|++|++++|.+....  |         ..++.+++|++|+++.|.+..+|..+
T Consensus        54 ~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~l~~~~  121 (332)
T 2ft3_A           54 PDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIH--E---------KAFSPLRKLQKLYISKNHLVEIPPNL  121 (332)
T ss_dssp             TTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEEC--G---------GGSTTCTTCCEEECCSSCCCSCCSSC
T ss_pred             CCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccC--H---------hHhhCcCCCCEEECCCCcCCccCccc
Confidence            5778888888 5677775533478888888888888776333  4         66777788888888777777777666


Q ss_pred             ccccCcEEEEE
Q 039375           88 LARKLERFKIS   98 (311)
Q Consensus        88 ~l~~L~~l~~~   98 (311)
                      . ++|+.++++
T Consensus       122 ~-~~L~~L~l~  131 (332)
T 2ft3_A          122 P-SSLVELRIH  131 (332)
T ss_dssp             C-TTCCEEECC
T ss_pred             c-ccCCEEECC
Confidence            5 677777665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=5.2e-15  Score=129.42  Aligned_cols=221  Identities=16%  Similarity=0.116  Sum_probs=155.3

Q ss_pred             CCccEEecCCCCCCc---ccChhHHHhccccceEEecc-ccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375            8 TKLRLLDLRDCFHLK---VIAPNVISSLIRLEELCMGN-CSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I   82 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~---~lp~~i~~~L~~Lq~L~l~~-~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~   82 (311)
                      .++++|++++ +.+.   .+|..+ +++++|++|++++ |.+...+  |         ..++.+++|++|+++.|.+. .
T Consensus        50 ~~l~~L~L~~-~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~--p---------~~l~~l~~L~~L~Ls~n~l~~~  116 (313)
T 1ogq_A           50 YRVNNLDLSG-LNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPI--P---------PAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             CCEEEEEEEC-CCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCC--C---------GGGGGCTTCSEEEEEEECCEEE
T ss_pred             ceEEEEECCC-CCccCCcccChhH-hCCCCCCeeeCCCCCcccccC--C---------hhHhcCCCCCEEECcCCeeCCc
Confidence            5899999999 5665   689887 9999999999995 8887667  7         88999999999999999976 7


Q ss_pred             cccccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccc
Q 039375           83 LQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRI  161 (311)
Q Consensus        83 lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~  161 (311)
                      +|..+. +++|++++++.+  .+.+.+|..  +          +.+++++.+.+..+          .++...+.....+
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~--~----------~~l~~L~~L~L~~N----------~l~~~~p~~l~~l  172 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYN--ALSGTLPPS--I----------SSLPNLVGITFDGN----------RISGAIPDSYGSF  172 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSS--EEESCCCGG--G----------GGCTTCCEEECCSS----------CCEEECCGGGGCC
T ss_pred             CCHHHhCCCCCCEEeCCCC--ccCCcCChH--H----------hcCCCCCeEECcCC----------cccCcCCHHHhhh
Confidence            887775 899999988632  233333321  1          45555655555432          1221111111455


Q ss_pred             c-ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          162 T-LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       162 ~-~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      + +|+.|++++ .+..                ..|.....+. |+.|++++| +++. ..+..+..+++|+.|++++|..
T Consensus       173 ~~~L~~L~L~~N~l~~----------------~~~~~~~~l~-L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          173 SKLFTSMTISRNRLTG----------------KIPPTFANLN-LAFVDLSRN-MLEG-DASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             CTTCCEEECCSSEEEE----------------ECCGGGGGCC-CSEEECCSS-EEEE-CCGGGCCTTSCCSEEECCSSEE
T ss_pred             hhcCcEEECcCCeeec----------------cCChHHhCCc-ccEEECcCC-cccC-cCCHHHhcCCCCCEEECCCCce
Confidence            5 788888876 1111                1122234454 999999999 8887 5677889999999999998864


Q ss_pred             ceEEeccCCcccccccccccccceeecccccccc-eeccCCceecCCCccEEEEecCC
Q 039375          240 MTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT-SFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~-~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      ...+.         ....+++|++|++.++. +. .+  +.....+++|++|+++++.
T Consensus       234 ~~~~~---------~~~~l~~L~~L~Ls~N~-l~~~~--p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          234 AFDLG---------KVGLSKNLNGLDLRNNR-IYGTL--PQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CCBGG---------GCCCCTTCCEEECCSSC-CEECC--CGGGGGCTTCCEEECCSSE
T ss_pred             eeecC---------cccccCCCCEEECcCCc-ccCcC--ChHHhcCcCCCEEECcCCc
Confidence            32221         12567899999999875 44 33  2245678999999999874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.63  E-value=1.2e-14  Score=137.09  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE   46 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~   46 (311)
                      .+..+++|++|++++ +.++.++++.++++++|++|++++|.+.
T Consensus        47 ~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~   89 (570)
T 2z63_A           47 SFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (570)
T ss_dssp             TTTTCSSCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             HhhCCCCceEEECCC-CcCCccCcccccCchhCCEEeCcCCcCC
Confidence            566777777777777 4666665544477777777777777765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.9e-15  Score=134.40  Aligned_cols=235  Identities=16%  Similarity=0.110  Sum_probs=138.9

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-   86 (311)
                      ++|++|++++ +.++.+|++.++++++|++|++++|.+. .+. |         ..++.+++|++|++++|.+..+|.. 
T Consensus        52 ~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~  119 (353)
T 2z80_A           52 EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGIN-TIE-E---------DSFSSLGSLEHLDLSYNYLSNLSSSW  119 (353)
T ss_dssp             TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCC-EEC-T---------TTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred             ccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccC-ccC-H---------hhcCCCCCCCEEECCCCcCCcCCHhH
Confidence            4899999999 6788887744489999999999999887 442 4         5688889999999999888888876 


Q ss_pred             c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                      + .+++|+.++++.+.   ...+|....+          ..++++         +.|.+.++..++.........+++|+
T Consensus       120 ~~~l~~L~~L~L~~n~---l~~l~~~~~~----------~~l~~L---------~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNP---YKTLGETSLF----------SHLTKL---------QILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             HTTCTTCSEEECTTCC---CSSSCSSCSC----------TTCTTC---------CEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             hCCCccCCEEECCCCC---CcccCchhhh----------ccCCCC---------cEEECCCCccccccCHHHccCCCCCC
Confidence            3 38889988875322   1122210011          333444         44444444333333221115566777


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      +|++++ .+..                ..+.....+++|+.|+++++ +++. .+......+++|+.|++++|.......
T Consensus       178 ~L~l~~n~l~~----------------~~~~~l~~l~~L~~L~l~~n-~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~  239 (353)
T 2z80_A          178 ELEIDASDLQS----------------YEPKSLKSIQNVSHLILHMK-QHIL-LLEIFVDVTSSVECLELRDTDLDTFHF  239 (353)
T ss_dssp             EEEEEETTCCE----------------ECTTTTTTCSEEEEEEEECS-CSTT-HHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred             EEECCCCCcCc----------------cCHHHHhccccCCeecCCCC-cccc-chhhhhhhcccccEEECCCCccccccc
Confidence            777765 1111                01222444566667777666 4544 333334456666777766654322100


Q ss_pred             ccCC-----------------------cccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375          245 INDK-----------------------EGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       245 ~~~~-----------------------~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      ..-.                       ...+.....+++|++|+++++ .++.+... .+..+++|++|++.+++
T Consensus       240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDG-IFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHH-HHhcCCCCCEEEeeCCC
Confidence            0000                       001112345778899999887 46666321 13568899999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.62  E-value=7.2e-15  Score=137.23  Aligned_cols=81  Identities=16%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc-
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI-   82 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-   82 (311)
                      ++.+++|++|++++ +.++.++++.++++++|++|++++|.+. .+  |         ..  .+++|++|++++|.+.. 
T Consensus        41 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l--p---------~~--~l~~L~~L~L~~N~l~~~  105 (520)
T 2z7x_B           41 ILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLV-KI--S---------CH--PTVNLKHLDLSFNAFDAL  105 (520)
T ss_dssp             HTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCC-EE--E---------CC--CCCCCSEEECCSSCCSSC
T ss_pred             ccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCcee-ec--C---------cc--ccCCccEEeccCCccccc
Confidence            44555555555555 3444442222255555555555555554 44  2         22  45555555555555443 


Q ss_pred             -cccccc-cccCcEEEEEe
Q 039375           83 -LQEGFL-ARKLERFKISI   99 (311)
Q Consensus        83 -lp~~~~-l~~L~~l~~~~   99 (311)
                       +|..+. +++|+.++++.
T Consensus       106 ~~p~~~~~l~~L~~L~L~~  124 (520)
T 2z7x_B          106 PICKEFGNMSQLKFLGLST  124 (520)
T ss_dssp             CCCGGGGGCTTCCEEEEEE
T ss_pred             cchhhhccCCcceEEEecC
Confidence             334443 55666665553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.61  E-value=7.1e-15  Score=129.52  Aligned_cols=76  Identities=26%  Similarity=0.349  Sum_probs=50.7

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc-ccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL-QEG   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l-p~~   86 (311)
                      .+|+++++++ +.++.+|.++ .  ++|++|++++|.+. .+. |         ..++.+++|++|+++.|.+..+ |..
T Consensus        33 c~l~~l~~~~-~~l~~ip~~~-~--~~l~~L~l~~n~i~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~   97 (332)
T 2ft3_A           33 CHLRVVQCSD-LGLKAVPKEI-S--PDTTLLDLQNNDIS-ELR-K---------DDFKGLQHLYALVLVNNKISKIHEKA   97 (332)
T ss_dssp             EETTEEECCS-SCCSSCCSCC-C--TTCCEEECCSSCCC-EEC-T---------TTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             ccCCEEECCC-CCccccCCCC-C--CCCeEEECCCCcCC-ccC-H---------hHhhCCCCCcEEECCCCccCccCHhH
Confidence            3677777777 5667777654 2  47777777777776 332 3         4667777777777777776665 444


Q ss_pred             cc-cccCcEEEEE
Q 039375           87 FL-ARKLERFKIS   98 (311)
Q Consensus        87 ~~-l~~L~~l~~~   98 (311)
                      +. +++|+.++++
T Consensus        98 ~~~l~~L~~L~L~  110 (332)
T 2ft3_A           98 FSPLRKLQKLYIS  110 (332)
T ss_dssp             STTCTTCCEEECC
T ss_pred             hhCcCCCCEEECC
Confidence            43 6777777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.61  E-value=8.5e-15  Score=128.86  Aligned_cols=242  Identities=11%  Similarity=0.060  Sum_probs=144.7

Q ss_pred             ccCCCCCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      .++++++|++|++++ +.++.+ |..+ +++++|++|++++|.+. .+  |         ..+.  ++|++|+++.|.+.
T Consensus        71 ~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~-~l--~---------~~~~--~~L~~L~l~~n~l~  134 (330)
T 1xku_A           71 DFKNLKNLHTLILIN-NKISKISPGAF-APLVKLERLYLSKNQLK-EL--P---------EKMP--KTLQELRVHENEIT  134 (330)
T ss_dssp             TTTTCTTCCEEECCS-SCCCCBCTTTT-TTCTTCCEEECCSSCCS-BC--C---------SSCC--TTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEECCC-CcCCeeCHHHh-cCCCCCCEEECCCCcCC-cc--C---------hhhc--ccccEEECCCCccc
Confidence            588999999999999 678877 5565 99999999999999987 66  5         4433  78999999988887


Q ss_pred             cccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc------------eeeEEcccc
Q 039375           82 ILQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD------------FTDICSMKL  147 (311)
Q Consensus        82 ~lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~------------l~~L~l~~~  147 (311)
                      .++...  .+++|+.++++.+.....+..+.  .+          ..+++++.+.+..+            ++.|.+..+
T Consensus       135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~----------~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n  202 (330)
T 1xku_A          135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENG--AF----------QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN  202 (330)
T ss_dssp             BBCHHHHTTCTTCCEEECCSSCCCGGGBCTT--GG----------GGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS
T ss_pred             ccCHhHhcCCccccEEECCCCcCCccCcChh--hc----------cCCCCcCEEECCCCccccCCccccccCCEEECCCC
Confidence            777643  38888888876332111111110  11          34455555554432            333333322


Q ss_pred             CCcceecccccccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccC
Q 039375          148 QAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTL  226 (311)
Q Consensus       148 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l  226 (311)
                      . ++.........+++|+.|++++ .+.                ...+.....+++|+.|++++| +++.+  +..+..+
T Consensus       203 ~-l~~~~~~~~~~l~~L~~L~Ls~n~l~----------------~~~~~~~~~l~~L~~L~L~~N-~l~~l--p~~l~~l  262 (330)
T 1xku_A          203 K-ITKVDAASLKGLNNLAKLGLSFNSIS----------------AVDNGSLANTPHLRELHLNNN-KLVKV--PGGLADH  262 (330)
T ss_dssp             C-CCEECTGGGTTCTTCCEEECCSSCCC----------------EECTTTGGGSTTCCEEECCSS-CCSSC--CTTTTTC
T ss_pred             c-CCccCHHHhcCCCCCCEEECCCCcCc----------------eeChhhccCCCCCCEEECCCC-cCccC--ChhhccC
Confidence            1 2222111113444555555543 000                011234567889999999999 88863  4567889


Q ss_pred             CCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceec-cCCceecCCCccEEEEecC
Q 039375          227 VRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFC-SANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       227 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~-~~~~~~~~~~L~~L~i~~c  295 (311)
                      ++|++|++++|. +..+....- ........++.++.+.+.+.+- ..+. .+..+..+++++.++++++
T Consensus       263 ~~L~~L~l~~N~-i~~~~~~~f-~~~~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          263 KYIQVVYLHNNN-ISAIGSNDF-CPPGYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCCEEECCSSC-CCCCCTTSS-SCSSCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CCcCEEECCCCc-CCccChhhc-CCcccccccccccceEeecCcc-cccccCccccccccceeEEEeccc
Confidence            999999999875 444422111 0011112357788899988763 2211 1123345667888877664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.61  E-value=1.3e-14  Score=136.80  Aligned_cols=83  Identities=18%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..++++++|++|++++ +.++.++++.++++++|++|++++|.+. .+  |         ..  .+++|++|++++|.+.
T Consensus        70 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l--p---------~~--~l~~L~~L~Ls~N~l~  134 (562)
T 3a79_B           70 PDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NI--S---------CC--PMASLRHLDLSFNDFD  134 (562)
T ss_dssp             GGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCC-EE--C---------SC--CCTTCSEEECCSSCCS
T ss_pred             hhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCC-cc--C---------cc--ccccCCEEECCCCCcc
Confidence            3567777788888877 5677664443477778888888887776 66  4         33  6778888888877776


Q ss_pred             ccc--cccc-cccCcEEEEEe
Q 039375           82 ILQ--EGFL-ARKLERFKISI   99 (311)
Q Consensus        82 ~lp--~~~~-l~~L~~l~~~~   99 (311)
                      .++  ..+. +++|+.++++.
T Consensus       135 ~l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          135 VLPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             BCCCCGGGGGCTTCCEEEEEC
T ss_pred             ccCchHhhcccCcccEEecCC
Confidence            654  4453 77888887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=2e-14  Score=141.82  Aligned_cols=87  Identities=23%  Similarity=0.282  Sum_probs=70.4

Q ss_pred             CCccCCCCCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeeccccccccccccc--cCCCCCccEEEEee
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDE--LMLLPWLTTLEIDV   77 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~--l~~L~~L~~L~l~~   77 (311)
                      |..++++++|++|+|++ +.+..+ |..+ +++++|++|++++|.+...+  |         ..  ++.+++|++|+++.
T Consensus        66 ~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~~~L~~L~~L~Ls~  132 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGS-SKIYFLHPDAF-QGLFHLFELRLYFCGLSDAV--L---------KDGYFRNLKALTRLDLSK  132 (844)
T ss_dssp             TTTTSSCTTCCEEECTT-CCCCEECTTSS-CSCSSCCCEECTTCCCSSCC--S---------TTCCCSSCSSCCEEEEES
T ss_pred             HHHhcCCCCCCEEECCC-CcCcccCHhHc-cCCcccCEeeCcCCCCCccc--c---------cCccccccCCCCEEECCC
Confidence            45689999999999999 677776 5555 99999999999999987444  3         33  88999999999999


Q ss_pred             cCccccc--cccc-cccCcEEEEEec
Q 039375           78 KNDSILQ--EGFL-ARKLERFKISIG  100 (311)
Q Consensus        78 ~~~~~lp--~~~~-l~~L~~l~~~~~  100 (311)
                      |....++  ..+. +++|+.++++.+
T Consensus       133 N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          133 NQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CcccccccchhHhhCCCCCEEECCCC
Confidence            9876653  3454 899999998743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=1.2e-14  Score=135.62  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=67.9

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEecccccee-eeeccccccccccccccCCCCCccEEEEeecC
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEW-EVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~-~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      |..++++++|++|++++ +.++.+|..   .+++|++|++++|.+.. .+  |         ..++.+++|++|++++|.
T Consensus        62 ~~~~~~l~~L~~L~Ls~-N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~--p---------~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           62 ISVFKFNQELEYLDLSH-NKLVKISCH---PTVNLKHLDLSFNAFDALPI--C---------KEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             GGGGTTCTTCCEEECCS-SCCCEEECC---CCCCCSEEECCSSCCSSCCC--C---------GGGGGCTTCCEEEEEESS
T ss_pred             hHHhhcccCCCEEecCC-CceeecCcc---ccCCccEEeccCCccccccc--h---------hhhccCCcceEEEecCcc
Confidence            45789999999999999 788999985   89999999999999873 24  6         788999999999999988


Q ss_pred             ccccccccccccC--cEEEEEec
Q 039375           80 DSILQEGFLARKL--ERFKISIG  100 (311)
Q Consensus        80 ~~~lp~~~~l~~L--~~l~~~~~  100 (311)
                      +... ....+++|  +.+++..+
T Consensus       127 l~~~-~~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B          127 LEKS-SVLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCGG-GGGGGTTSCEEEEEEEEC
T ss_pred             cchh-hccccccceeeEEEeecc
Confidence            6551 11236677  88888754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=1.1e-14  Score=136.84  Aligned_cols=85  Identities=19%  Similarity=0.169  Sum_probs=45.5

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..++++++|++|++++ +.++.++++.++++++|++|++++|.+....  |         ..++.+++|++|++++|.+.
T Consensus        44 ~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~---------~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           44 GDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLS--S---------SWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             STTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCC--H---------HHHTTCTTCCEEECTTCCCS
T ss_pred             hhhhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccC--H---------HHhccCCCCcEEECCCCccc
Confidence            3456666666666666 4555554333366666666666666655222  2         33555555555555555544


Q ss_pred             c--cccccc-cccCcEEEEE
Q 039375           82 I--LQEGFL-ARKLERFKIS   98 (311)
Q Consensus        82 ~--lp~~~~-l~~L~~l~~~   98 (311)
                      .  .|..+. +++|+.++++
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~  131 (549)
T 2z81_A          112 TLGVTSLFPNLTNLQTLRIG  131 (549)
T ss_dssp             SSCSSCSCTTCTTCCEEEEE
T ss_pred             ccchhhhhhccCCccEEECC
Confidence            2  223332 5555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.59  E-value=6e-15  Score=135.50  Aligned_cols=207  Identities=14%  Similarity=0.103  Sum_probs=135.2

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++++++|++|+|++ +.++.++++.++++++|++|++++|.+. .+. +         ..++.+++|+.|++++|.+
T Consensus        92 ~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A           92 ADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNWLT-VIP-S---------GAFEYLSKLRELWLRNNPI  159 (452)
T ss_dssp             TTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCS-BCC-T---------TTSSSCTTCCEEECCSCCC
T ss_pred             HHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCcCC-ccC-h---------hhhcccCCCCEEECCCCCc
Confidence            45688999999999999 7888887655599999999999999987 552 3         5578899999999999999


Q ss_pred             ccccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375           81 SILQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ  158 (311)
Q Consensus        81 ~~lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~  158 (311)
                      ..+|...  .+++|+.+++..+.  ....++.. .+          .++++++.+.+..+       ....+..+     
T Consensus       160 ~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~-~~----------~~l~~L~~L~L~~n-------~l~~~~~~-----  214 (452)
T 3zyi_A          160 ESIPSYAFNRVPSLMRLDLGELK--KLEYISEG-AF----------EGLFNLKYLNLGMC-------NIKDMPNL-----  214 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCCCT--TCCEECTT-TT----------TTCTTCCEEECTTS-------CCSSCCCC-----
T ss_pred             ceeCHhHHhcCCcccEEeCCCCC--CccccChh-hc----------cCCCCCCEEECCCC-------cccccccc-----
Confidence            9888754  38999999886322  22222210 11          44555655555443       01111111     


Q ss_pred             ccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375          159 SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC  237 (311)
Q Consensus       159 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c  237 (311)
                      ..+++|+.|++++ .+...                .+..+..+++|+.|++++| +++. ..+..+..+++|+.|++++|
T Consensus       215 ~~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFPEI----------------RPGSFHGLSSLKKLWVMNS-QVSL-IERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             TTCTTCCEEECTTSCCSEE----------------CGGGGTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSS
T ss_pred             cccccccEEECcCCcCccc----------------CcccccCccCCCEEEeCCC-cCce-ECHHHhcCCCCCCEEECCCC
Confidence            5677888888876 11111                1122445677788888777 6776 44556677778888888766


Q ss_pred             cCceEEeccCCcccccccccccccceeeccccc
Q 039375          238 RAMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       238 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                      . +..+...       ....+++|+.|.+.+++
T Consensus       277 ~-l~~~~~~-------~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          277 N-LSSLPHD-------LFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             C-CSCCCTT-------SSTTCTTCCEEECCSSC
T ss_pred             c-CCccChH-------HhccccCCCEEEccCCC
Confidence            4 3333211       12346677777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=7.6e-15  Score=126.50  Aligned_cols=80  Identities=11%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC-ccccc-
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN-DSILQ-   84 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~-~~~lp-   84 (311)
                      .++|++|++++ +.++.+|++.++++++|++|++++|.+. .+. |         ..++.+++|++|+++.|. +..++ 
T Consensus        31 ~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           31 PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLA-RID-A---------AAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             CTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-EEC-T---------TTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccc-eeC-H---------hhcCCccCCCEEeCCCCCCccccCH
Confidence            34666666666 5566665443466666777777666665 221 3         556666666666666664 55552 


Q ss_pred             cccc-cccCcEEEEE
Q 039375           85 EGFL-ARKLERFKIS   98 (311)
Q Consensus        85 ~~~~-l~~L~~l~~~   98 (311)
                      ..+. +++|+.+++.
T Consensus        99 ~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLD  113 (285)
T ss_dssp             TTTTTCTTCCEEECT
T ss_pred             HHhcCCcCCCEEECC
Confidence            3332 5566666553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.59  E-value=2.5e-14  Score=137.88  Aligned_cols=84  Identities=15%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++++++|++|++++ +.++.++++.++++++|++|++++|.+. .+. +         ..++.+++|++|+++.|.+..
T Consensus        44 ~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~-~---------~~~~~l~~L~~L~L~~n~l~~  111 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELS-QLS-D---------KTFAFCTNLTELHLMSNSIQK  111 (680)
T ss_dssp             GGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCSEEECCSSCCCC
T ss_pred             HHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccC-ccC-h---------hhhccCCCCCEEECCCCccCc
Confidence            356677777777777 4566554444477777777777777665 441 1         346677777777777777666


Q ss_pred             ccc-ccc-cccCcEEEEE
Q 039375           83 LQE-GFL-ARKLERFKIS   98 (311)
Q Consensus        83 lp~-~~~-l~~L~~l~~~   98 (311)
                      ++. .+. +++|+.++++
T Consensus       112 ~~~~~~~~l~~L~~L~Ls  129 (680)
T 1ziw_A          112 IKNNPFVKQKNLITLDLS  129 (680)
T ss_dssp             CCSCTTTTCTTCCEEECC
T ss_pred             cChhHccccCCCCEEECC
Confidence            653 332 6777777665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=1.8e-14  Score=135.90  Aligned_cols=78  Identities=14%  Similarity=0.086  Sum_probs=52.7

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      ++|++|++++ +.++.+|++.++++++|++|++++|.+....  |         ..++.+++|++|++++|.+..+|.. 
T Consensus        52 ~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~---------~~~~~l~~L~~L~Ls~N~l~~lp~~-  118 (562)
T 3a79_B           52 PRTKALSLSQ-NSISELRMPDISFLSELRVLRLSHNRIRSLD--F---------HVFLFNQDLEYLDVSHNRLQNISCC-  118 (562)
T ss_dssp             TTCCEEECCS-SCCCCCCGGGTTTCTTCCEEECCSCCCCEEC--T---------TTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred             CCcCEEECCC-CCccccChhhhccCCCccEEECCCCCCCcCC--H---------HHhCCCCCCCEEECCCCcCCccCcc-
Confidence            5677777777 5666665433477777777777777766332  4         5566777777777777777777766 


Q ss_pred             ccccCcEEEEE
Q 039375           88 LARKLERFKIS   98 (311)
Q Consensus        88 ~l~~L~~l~~~   98 (311)
                      .+++|+.++++
T Consensus       119 ~l~~L~~L~Ls  129 (562)
T 3a79_B          119 PMASLRHLDLS  129 (562)
T ss_dssp             CCTTCSEEECC
T ss_pred             ccccCCEEECC
Confidence            66777777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=3.2e-14  Score=134.08  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             ccCCCCCccEEecCCCCCCcc--cChhHHHhccccceEEeccccce
Q 039375            3 ALGQVTKLRLLDLRDCFHLKV--IAPNVISSLIRLEELCMGNCSVE   46 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~--lp~~i~~~L~~Lq~L~l~~~~~~   46 (311)
                      .++++++|++|++++ +.+..  +|..+ +++++|++|++++|.+.
T Consensus       119 ~~~~l~~L~~L~L~~-n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          119 PIGHLKTLKELNVAH-NLIQSFKLPEYF-SNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             SCTTCTTCCEEECCS-SCCCCCCCCGGG-GGCTTCCEEECTTSCCC
T ss_pred             cccccccccEEecCC-CccceecChhhh-cccCCCCEEeCcCCccc
Confidence            477888888888888 56654  57776 88888888888888765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=2.3e-14  Score=125.48  Aligned_cols=217  Identities=15%  Similarity=0.073  Sum_probs=143.4

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE   85 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~   85 (311)
                      .+++|++|++++ +.++.+++..++++++|++|++++|.+. .+            ..++.+++|++|++++|.+..++.
T Consensus        32 ~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~------------~~~~~l~~L~~L~Ls~n~l~~l~~   97 (317)
T 3o53_A           32 SAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLY-ET------------LDLESLSTLRTLDLNNNYVQELLV   97 (317)
T ss_dssp             TGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCE-EE------------EEETTCTTCCEEECCSSEEEEEEE
T ss_pred             cCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCC-cc------------hhhhhcCCCCEEECcCCccccccC
Confidence            466899999999 6888887655599999999999999887 44            237788999999999888777764


Q ss_pred             ccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           86 GFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        86 ~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                      .   ++|+.++++.+.  +.+ ++              ...++++         +.|.+..+ .++.+.......+++|+
T Consensus        98 ~---~~L~~L~l~~n~--l~~-~~--------------~~~~~~L---------~~L~l~~N-~l~~~~~~~~~~l~~L~  147 (317)
T 3o53_A           98 G---PSIETLHAANNN--ISR-VS--------------CSRGQGK---------KNIYLANN-KITMLRDLDEGCRSRVQ  147 (317)
T ss_dssp             C---TTCCEEECCSSC--CSE-EE--------------ECCCSSC---------EEEECCSS-CCCSGGGBCTGGGSSEE
T ss_pred             C---CCcCEEECCCCc--cCC-cC--------------ccccCCC---------CEEECCCC-CCCCccchhhhccCCCC
Confidence            3   788888775322  111 00              0222333         34444332 12222111115567888


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCC-cccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEE
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSS-SVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV  243 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~  243 (311)
                      .|++++ .+....                +.. ...+++|+.|++++| +++.+   .....+++|+.|++++|. +..+
T Consensus       148 ~L~Ls~N~l~~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~~---~~~~~l~~L~~L~Ls~N~-l~~l  206 (317)
T 3o53_A          148 YLDLKLNEIDTVN----------------FAELAASSDTLEHLNLQYN-FIYDV---KGQVVFAKLKTLDLSSNK-LAFM  206 (317)
T ss_dssp             EEECTTSCCCEEE----------------GGGGGGGTTTCCEEECTTS-CCCEE---ECCCCCTTCCEEECCSSC-CCEE
T ss_pred             EEECCCCCCCccc----------------HHHHhhccCcCCEEECCCC-cCccc---ccccccccCCEEECCCCc-CCcc
Confidence            888865 111100                111 235789999999999 88874   223358999999999875 4444


Q ss_pred             eccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCC
Q 039375          244 VINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKM  298 (311)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l  298 (311)
                      ..        ....+++|++|.++++ .++.+..  ....+++|++|++++++--
T Consensus       207 ~~--------~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          207 GP--------EFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CG--------GGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred             hh--------hhcccCcccEEECcCC-cccchhh--HhhcCCCCCEEEccCCCcc
Confidence            22        2356899999999987 5777743  4567899999999987643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=133.07  Aligned_cols=206  Identities=16%  Similarity=0.158  Sum_probs=134.8

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..++++++|++|+|++ +.++.++++.+.++++|++|++++|.+. .+. +         ..+..+++|+.|++++|.+.
T Consensus        82 ~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLT-TIP-N---------GAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             TTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCS-SCC-T---------TTSCSCSSCCEEECCSCCCC
T ss_pred             HHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCC-eeC-H---------hHhhccccCceeeCCCCccc
Confidence            5688999999999999 7889887665699999999999999987 552 2         46889999999999999998


Q ss_pred             cccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccc
Q 039375           82 ILQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQS  159 (311)
Q Consensus        82 ~lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~  159 (311)
                      .++...  .+++|+.+++..+.  ....++.. .+          .++++++.+.+..+       ....+..+     .
T Consensus       150 ~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~-~~----------~~l~~L~~L~L~~n-------~l~~~~~~-----~  204 (440)
T 3zyj_A          150 SIPSYAFNRIPSLRRLDLGELK--RLSYISEG-AF----------EGLSNLRYLNLAMC-------NLREIPNL-----T  204 (440)
T ss_dssp             EECTTTTTTCTTCCEEECCCCT--TCCEECTT-TT----------TTCSSCCEEECTTS-------CCSSCCCC-----T
T ss_pred             ccCHHHhhhCcccCEeCCCCCC--CcceeCcc-hh----------hcccccCeecCCCC-------cCcccccc-----C
Confidence            888744  38999999886322  22222110 11          44555666555443       01111111     5


Q ss_pred             cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      .+++|+.|++++ .+...                .+..+..+++|+.|++++| +++. ..+..+..+++|+.|++++|.
T Consensus       205 ~l~~L~~L~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAI----------------RPGSFQGLMHLQKLWMIQS-QIQV-IERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             TCSSCCEEECTTSCCCEE----------------CTTTTTTCTTCCEEECTTC-CCCE-ECTTSSTTCTTCCEEECTTSC
T ss_pred             CCcccCEEECCCCccCcc----------------ChhhhccCccCCEEECCCC-ceeE-EChhhhcCCCCCCEEECCCCC
Confidence            677888888876 11111                1222445677777777777 7776 445666777778888877664


Q ss_pred             CceEEeccCCcccccccccccccceeeccccc
Q 039375          239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                       +..+...       ....+++|+.|.+.+++
T Consensus       267 -l~~~~~~-------~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          267 -LTLLPHD-------LFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             -CCCCCTT-------TTSSCTTCCEEECCSSC
T ss_pred             -CCccChh-------HhccccCCCEEEcCCCC
Confidence             3333211       12346677777776543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.57  E-value=5.1e-14  Score=118.13  Aligned_cols=199  Identities=17%  Similarity=0.093  Sum_probs=123.9

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEecccc-ceeeeeccccccccccccccCCCCCccEEEEee-cCccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCS-VEWEVERANTERSNASLDELMLLPWLTTLEIDV-KNDSILQEG   86 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~-~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~-~~~~~lp~~   86 (311)
                      +|++|++++ +.++.+|+..++.+++|++|++++|. +. .+. +         ..+..+++|++|++++ |.+..++..
T Consensus        32 ~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~-~---------~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           32 STQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLE-S---------HSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             TCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCC-EEC-T---------TTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             cccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcc-eeC-H---------hHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            688888888 67777776444788888888888886 65 552 2         4567778888888887 777777754


Q ss_pred             c--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccccc
Q 039375           87 F--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLT  164 (311)
Q Consensus        87 ~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L  164 (311)
                      .  .+++|+.++++.+..   ..+|                                       .+        ..+++|
T Consensus       100 ~f~~l~~L~~L~l~~n~l---~~lp---------------------------------------~~--------~~l~~L  129 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGL---KMFP---------------------------------------DL--------TKVYST  129 (239)
T ss_dssp             SEECCTTCCEEEEEEECC---CSCC---------------------------------------CC--------TTCCBC
T ss_pred             HhCCCCCCCEEeCCCCCC---cccc---------------------------------------cc--------cccccc
Confidence            3  367777777763320   0011                                       00        223333


Q ss_pred             c---eEEEeceEecccccccCcccccccEEeCCCCcccccCcc-EEEEecCCCceeecCccccccCCCCCEEeeccCcCc
Q 039375          165 V---SLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLT-KLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAM  240 (311)
Q Consensus       165 ~---~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~-~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l  240 (311)
                      +   .|++++. ..+...             .+..+..+++|+ .|+++++ +++. .+...+.. ++|+.|++++|..+
T Consensus       130 ~~L~~L~l~~N-~~l~~i-------------~~~~~~~l~~L~~~L~l~~n-~l~~-i~~~~~~~-~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          130 DIFFILEITDN-PYMTSI-------------PVNAFQGLCNETLTLKLYNN-GFTS-VQGYAFNG-TKLDAVYLNKNKYL  192 (239)
T ss_dssp             CSEEEEEEESC-TTCCEE-------------CTTTTTTTBSSEEEEECCSC-CCCE-ECTTTTTT-CEEEEEECTTCTTC
T ss_pred             ccccEEECCCC-cchhhc-------------CcccccchhcceeEEEcCCC-CCcc-cCHhhcCC-CCCCEEEcCCCCCc
Confidence            3   6666541 000000             011244577888 8999888 7776 44444444 78999999988656


Q ss_pred             eEEeccCCcccccccccc-cccceeecccccccceeccCCceecCCCccEEEEecCCCC
Q 039375          241 TEVVINDKEGVDIEEIVF-SKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKM  298 (311)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~-~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l  298 (311)
                      +.+....       ...+ ++|++|++.++ .++.+..    ..+++|++|.+.++++|
T Consensus       193 ~~i~~~~-------~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          193 TVIDKDA-------FGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTWTL  239 (239)
T ss_dssp             CEECTTT-------TTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC---
T ss_pred             ccCCHHH-------hhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCccCC
Confidence            6663311       2446 78888888874 4666632    26889999998888764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.55  E-value=3.2e-14  Score=137.06  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=68.5

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..++++++|++|++++ +.++.+|++.++++++|++|++++|.+. .+. |         ..++.+++|++|+++.|...
T Consensus        67 ~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~l~  134 (680)
T 1ziw_A           67 ELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELHLMSNSIQ-KIK-N---------NPFVKQKNLITLDLSHNGLS  134 (680)
T ss_dssp             THHHHCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-S---------CTTTTCTTCCEEECCSSCCS
T ss_pred             HHHhcccCcCEEECCC-CccCccChhhhccCCCCCEEECCCCccC-ccC-h---------hHccccCCCCEEECCCCccc
Confidence            4567899999999999 6888898864599999999999999887 442 4         56888999999999988866


Q ss_pred             cccc-cc-ccccCcEEEEEe
Q 039375           82 ILQE-GF-LARKLERFKISI   99 (311)
Q Consensus        82 ~lp~-~~-~l~~L~~l~~~~   99 (311)
                      ..+. .+ .+++|+.++++.
T Consensus       135 ~~~~~~~~~l~~L~~L~L~~  154 (680)
T 1ziw_A          135 STKLGTQVQLENLQELLLSN  154 (680)
T ss_dssp             CCCCCSSSCCTTCCEEECCS
T ss_pred             ccCchhhcccccCCEEEccC
Confidence            5543 34 388899888763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.52  E-value=1.6e-13  Score=121.80  Aligned_cols=221  Identities=18%  Similarity=0.079  Sum_probs=135.5

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccE-EEEeecCccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTT-LEIDVKNDSILQEG   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~-L~l~~~~~~~lp~~   86 (311)
                      +++++|+|++ +.|+.+|++.+++|++|++|++++|.+...++ +         ..+..+++|.. +.+..|.+..++..
T Consensus        30 ~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~---------~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           30 RNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-A---------DVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             TTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-T---------TSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-h---------hHhhcchhhhhhhcccCCcccccCch
Confidence            5788899988 78888887655888899999999888764552 2         44567777765 44456777777654


Q ss_pred             c-c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccc-cc
Q 039375           87 F-L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRI-TL  163 (311)
Q Consensus        87 ~-~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~-~~  163 (311)
                      . . +++|+.++++.+...   .+|... .          .....         +..+.+..+..++.+.......+ ..
T Consensus        99 ~f~~l~~L~~L~l~~n~l~---~~~~~~-~----------~~~~~---------l~~l~l~~~~~i~~l~~~~f~~~~~~  155 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIK---HLPDVH-K----------IHSLQ---------KVLLDIQDNINIHTIERNSFVGLSFE  155 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCS---SCCCCT-T----------CCBSS---------CEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred             hhhhccccccccccccccc---cCCchh-h----------cccch---------hhhhhhccccccccccccchhhcchh
Confidence            3 3 788888888744311   111000 0          00111         23334444444444322111122 24


Q ss_pred             cceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceE
Q 039375          164 TVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTE  242 (311)
Q Consensus       164 L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~  242 (311)
                      ++.|++++ .+..++                 .......+|+.+.+.++..++. .+...+..+++|++|++++|. +..
T Consensus       156 l~~L~L~~N~i~~i~-----------------~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N~-l~~  216 (350)
T 4ay9_X          156 SVILWLNKNGIQEIH-----------------NSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRTR-IHS  216 (350)
T ss_dssp             CEEEECCSSCCCEEC-----------------TTSSTTEEEEEEECTTCTTCCC-CCTTTTTTEECCSEEECTTSC-CCC
T ss_pred             hhhhccccccccCCC-----------------hhhccccchhHHhhccCCcccC-CCHHHhccCcccchhhcCCCC-cCc
Confidence            56666654 111111                 1122345788888877657777 555677888899999998764 555


Q ss_pred             EeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEec
Q 039375          243 VVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIG  294 (311)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~  294 (311)
                      +..          ..|.+|++|.+.++.+++.+.+   ...+++|+.+++.+
T Consensus       217 lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          217 LPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY  255 (350)
T ss_dssp             CCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred             cCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence            522          4578888888888888888743   45678888888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.52  E-value=6.8e-14  Score=120.97  Aligned_cols=201  Identities=15%  Similarity=0.093  Sum_probs=123.7

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++++++++.+++++ +.++.+|.++ .  .++++|++++|.+....  |         ..+..+++|+.|+++.|.+..
T Consensus         5 ~~~~l~~l~~l~~~~-~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~   69 (290)
T 1p9a_G            5 EVSKVASHLEVNCDK-RNLTALPPDL-P--KDTTILHLSENLLYTFS--L---------ATLMPYTRLTQLNLDRAELTK   69 (290)
T ss_dssp             EEECSTTCCEEECTT-SCCSSCCSCC-C--TTCCEEECTTSCCSEEE--G---------GGGTTCTTCCEEECTTSCCCE
T ss_pred             cccccCCccEEECCC-CCCCcCCCCC-C--CCCCEEEcCCCcCCccC--H---------HHhhcCCCCCEEECCCCccCc
Confidence            367899999999999 8899999876 4  68999999999987333  5         778899999999999999888


Q ss_pred             cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375           83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT  162 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~  162 (311)
                      ++....+++|+.++++.+.   +..+|..  +          ..+++++.+.+..+          .++.+.......++
T Consensus        70 ~~~~~~l~~L~~L~Ls~N~---l~~l~~~--~----------~~l~~L~~L~l~~N----------~l~~l~~~~~~~l~  124 (290)
T 1p9a_G           70 LQVDGTLPVLGTLDLSHNQ---LQSLPLL--G----------QTLPALTVLDVSFN----------RLTSLPLGALRGLG  124 (290)
T ss_dssp             EECCSCCTTCCEEECCSSC---CSSCCCC--T----------TTCTTCCEEECCSS----------CCCCCCSSTTTTCT
T ss_pred             ccCCCCCCcCCEEECCCCc---CCcCchh--h----------ccCCCCCEEECCCC----------cCcccCHHHHcCCC
Confidence            8876568899998886332   1122211  1          33344444443322          11111111014455


Q ss_pred             ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCce
Q 039375          163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMT  241 (311)
Q Consensus       163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~  241 (311)
                      +|+.|++++ .+...+                +..+..+++|+.|++++| +++. .+...+..+++|+.|++++|. +.
T Consensus       125 ~L~~L~L~~N~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-l~~~~~~~l~~L~~L~L~~N~-l~  185 (290)
T 1p9a_G          125 ELQELYLKGNELKTLP----------------PGLLTPTPKLEKLSLANN-NLTE-LPAGLLNGLENLDTLLLQENS-LY  185 (290)
T ss_dssp             TCCEEECTTSCCCCCC----------------TTTTTTCTTCCEEECTTS-CCSC-CCTTTTTTCTTCCEEECCSSC-CC
T ss_pred             CCCEEECCCCCCCccC----------------hhhcccccCCCEEECCCC-cCCc-cCHHHhcCcCCCCEEECCCCc-CC
Confidence            666666654 111110                111334567777777777 6666 444555667777777777654 33


Q ss_pred             EEeccCCcccccccccccccceeeccccc
Q 039375          242 EVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                      .+.        .....++.|+.+.+.+.+
T Consensus       186 ~ip--------~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          186 TIP--------KGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCC--------TTTTTTCCCSEEECCSCC
T ss_pred             ccC--------hhhcccccCCeEEeCCCC
Confidence            331        112334566666666543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.52  E-value=2.4e-13  Score=129.12  Aligned_cols=76  Identities=24%  Similarity=0.254  Sum_probs=54.8

Q ss_pred             ccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCC
Q 039375          200 FRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSAN  279 (311)
Q Consensus       200 l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~  279 (311)
                      +++|+.|++++| +++.+ +    ..+++|+.|++++|. +..+.           ..+++|++|.++++ .++.+.  .
T Consensus       220 ~~~L~~L~Ls~N-~L~~l-p----~~l~~L~~L~Ls~N~-L~~lp-----------~~~~~L~~L~Ls~N-~L~~lp--~  278 (622)
T 3g06_A          220 PSGLKELIVSGN-RLTSL-P----VLPSELKELMVSGNR-LTSLP-----------MLPSGLLSLSVYRN-QLTRLP--E  278 (622)
T ss_dssp             CTTCCEEECCSS-CCSCC-C----CCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCCSCC--G
T ss_pred             CCCCCEEEccCC-ccCcC-C----CCCCcCcEEECCCCC-CCcCC-----------cccccCcEEeCCCC-CCCcCC--H
Confidence            467888888888 77762 2    456788888888764 44441           24678999999887 466663  3


Q ss_pred             ceecCCCccEEEEecCC
Q 039375          280 YTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       280 ~~~~~~~L~~L~i~~c~  296 (311)
                      ....+++|+.|++.+++
T Consensus       279 ~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          279 SLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             GGGGSCTTCEEECCSCC
T ss_pred             HHhhccccCEEEecCCC
Confidence            56678999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.51  E-value=6.9e-14  Score=121.66  Aligned_cols=203  Identities=19%  Similarity=0.117  Sum_probs=136.5

Q ss_pred             cCCCCCccEEecCCCCCCccc---ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVI---APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~l---p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      ++++++|++|++++ +.++.+   |..+ ..+++|++|++++|.+. .+  |         ..+..+++|++|+++.|.+
T Consensus        48 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~-~l--~---------~~~~~l~~L~~L~l~~n~l  113 (306)
T 2z66_A           48 FDKLTQLTKLSLSS-NGLSFKGCCSQSD-FGTTSLKYLDLSFNGVI-TM--S---------SNFLGLEQLEHLDFQHSNL  113 (306)
T ss_dssp             TTTCTTCSEEECCS-SCCCEEEEEEHHH-HSCSCCCEEECCSCSEE-EE--E---------EEEETCTTCCEEECTTSEE
T ss_pred             hhccccCCEEECCC-CccCcccCccccc-ccccccCEEECCCCccc-cC--h---------hhcCCCCCCCEEECCCCcc
Confidence            68899999999999 677755   5666 78999999999999987 66  5         6788999999999999888


Q ss_pred             ccccc--cc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcce-eccc
Q 039375           81 SILQE--GF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINN-VEYI  156 (311)
Q Consensus        81 ~~lp~--~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~-~~~~  156 (311)
                      ..++.  .+ .+++|+.++++.+.  .....+.  .+          ..+++++.+.+.++         . ++. ....
T Consensus       114 ~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~--~~----------~~l~~L~~L~l~~n---------~-l~~~~~~~  169 (306)
T 2z66_A          114 KQMSEFSVFLSLRNLIYLDISHTH--TRVAFNG--IF----------NGLSSLEVLKMAGN---------S-FQENFLPD  169 (306)
T ss_dssp             ESSTTTTTTTTCTTCCEEECTTSC--CEECSTT--TT----------TTCTTCCEEECTTC---------E-EGGGEECS
T ss_pred             cccccchhhhhccCCCEEECCCCc--CCccchh--hc----------ccCcCCCEEECCCC---------c-cccccchh
Confidence            87765  33 38899999875322  2211111  11          34455555555432         1 111 0011


Q ss_pred             ccccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeec
Q 039375          157 SQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY  235 (311)
Q Consensus       157 ~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~  235 (311)
                      ....+++|+.|++++ .+..                ..+.....+++|+.|++++| ++++ .+...+..+++|+.|+++
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~----------------~~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQ----------------LSPTAFNSLSSLQVLNMSHN-NFFS-LDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCE----------------ECTTTTTTCTTCCEEECTTS-CCSB-CCSGGGTTCTTCCEEECT
T ss_pred             HHhhCcCCCEEECCCCCcCC----------------cCHHHhcCCCCCCEEECCCC-ccCc-cChhhccCcccCCEeECC
Confidence            116677899999876 1111                11233556789999999999 7877 455567888999999999


Q ss_pred             cCcCceEEeccCCccccccccccc-ccceeeccccc
Q 039375          236 GCRAMTEVVINDKEGVDIEEIVFS-KLKALILCDLD  270 (311)
Q Consensus       236 ~c~~l~~~~~~~~~~~~~~~~~~~-~L~~L~i~~~~  270 (311)
                      +|...+.. .       .....++ +|++|.+.+++
T Consensus       232 ~N~l~~~~-~-------~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          232 LNHIMTSK-K-------QELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             TSCCCBCS-S-------SSCCCCCTTCCEEECTTCC
T ss_pred             CCCCcccC-H-------HHHHhhhccCCEEEccCCC
Confidence            87643322 1       1124454 78899888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.51  E-value=3.6e-14  Score=133.23  Aligned_cols=83  Identities=19%  Similarity=0.278  Sum_probs=52.9

Q ss_pred             cCCCCCccEEecCCCCCCcc--cChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            4 LGQVTKLRLLDLRDCFHLKV--IAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~--lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ++++++|++|++++ +.++.  +|..+ +++++|++|++++|.....+. +         ..++.+++|+.|+++.|...
T Consensus        94 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~-~---------~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           94 FGPLSSLKYLNLMG-NPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIR-R---------IDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             HTTCTTCCEEECTT-CCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEEC-T---------TTTTTCCEEEEEEEEETTCC
T ss_pred             hccCCCCcEEECCC-Ccccccchhhhh-hccCCccEEECCCCccccccC-H---------hhhhcccccCeeeccCCccc
Confidence            67788888888888 56663  35555 788888888888887433442 2         45666777777777766644


Q ss_pred             c-cccccc-cccCcEEEEE
Q 039375           82 I-LQEGFL-ARKLERFKIS   98 (311)
Q Consensus        82 ~-lp~~~~-l~~L~~l~~~   98 (311)
                      . .|..+. +++|+.+++.
T Consensus       162 ~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEE
T ss_pred             ccChhhhhccccCceEecc
Confidence            3 344442 4555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=6.2e-14  Score=129.93  Aligned_cols=216  Identities=16%  Similarity=0.073  Sum_probs=146.1

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      .++|++|+|++ +.++.+++..++.+++|++|++++|.+. ..  +         . ++.+++|+.|++++|.+..+|..
T Consensus        33 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~--~---------~-l~~l~~L~~L~Ls~N~l~~l~~~   98 (487)
T 3oja_A           33 AWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLY-ET--L---------D-LESLSTLRTLDLNNNYVQELLVG   98 (487)
T ss_dssp             GGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCE-EE--E---------E-CTTCTTCCEEECCSSEEEEEEEC
T ss_pred             CCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCC-CC--c---------c-cccCCCCCEEEecCCcCCCCCCC
Confidence            34899999999 6888786544599999999999999987 34  2         3 78899999999999988877754


Q ss_pred             cccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           87 FLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        87 ~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                         ++|+.++++.+.  +.+ ++              ...++++         +.|.+..+. ++.........+++|+.
T Consensus        99 ---~~L~~L~L~~N~--l~~-~~--------------~~~l~~L---------~~L~L~~N~-l~~~~~~~~~~l~~L~~  148 (487)
T 3oja_A           99 ---PSIETLHAANNN--ISR-VS--------------CSRGQGK---------KNIYLANNK-ITMLRDLDEGCRSRVQY  148 (487)
T ss_dssp             ---TTCCEEECCSSC--CCC-EE--------------ECCCSSC---------EEEECCSSC-CCSGGGBCGGGGSSEEE
T ss_pred             ---CCcCEEECcCCc--CCC-CC--------------ccccCCC---------CEEECCCCC-CCCCCchhhcCCCCCCE
Confidence               788888876332  111 00              0222333         444444321 22221111155778888


Q ss_pred             EEEec-eEecccccccCcccccccEEeCCCCc-ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSS-VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~-~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      |++++ .+...                .+... ..+++|+.|++++| .++++   .....+++|+.|++++|. +..+.
T Consensus       149 L~Ls~N~l~~~----------------~~~~l~~~l~~L~~L~Ls~N-~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~  207 (487)
T 3oja_A          149 LDLKLNEIDTV----------------NFAELAASSDTLEHLNLQYN-FIYDV---KGQVVFAKLKTLDLSSNK-LAFMG  207 (487)
T ss_dssp             EECTTSCCCEE----------------EGGGGGGGTTTCCEEECTTS-CCCEE---ECCCCCTTCCEEECCSSC-CCEEC
T ss_pred             EECCCCCCCCc----------------ChHHHhhhCCcccEEecCCC-ccccc---cccccCCCCCEEECCCCC-CCCCC
Confidence            88875 11110                01112 25789999999999 88874   223468999999999876 44442


Q ss_pred             ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCC
Q 039375          245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKM  298 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l  298 (311)
                      .        ....+++|+.|+++++ .+..+..  ....+++|+.|++.+++-.
T Consensus       208 ~--------~~~~l~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          208 P--------EFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             G--------GGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred             H--------hHcCCCCccEEEecCC-cCcccch--hhccCCCCCEEEcCCCCCc
Confidence            2        2357899999999986 4777743  4567899999999987644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.50  E-value=7.7e-14  Score=120.15  Aligned_cols=184  Identities=17%  Similarity=0.176  Sum_probs=118.8

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEecccc-ceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCS-VEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~-~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      ..++++++|++|++++ +.++.+++..++++++|++|++++|. +. .+. |         ..+..+++|++|++++|.+
T Consensus        50 ~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l  117 (285)
T 1ozn_A           50 ASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLR-SVD-P---------ATFHGLGRLHTLHLDRCGL  117 (285)
T ss_dssp             TTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCC-CCC-T---------TTTTTCTTCCEEECTTSCC
T ss_pred             HHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCcc-ccC-H---------HHhcCCcCCCEEECCCCcC
Confidence            4588999999999999 68887844334999999999999997 65 432 4         6788999999999999998


Q ss_pred             ccccc-ccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375           81 SILQE-GFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ  158 (311)
Q Consensus        81 ~~lp~-~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~  158 (311)
                      ..++. .+. +++|+.++++.+.  + ..++.. .+          +.+++++.+.+.++          .++.+.....
T Consensus       118 ~~~~~~~~~~l~~L~~L~l~~n~--l-~~~~~~-~~----------~~l~~L~~L~l~~n----------~l~~~~~~~~  173 (285)
T 1ozn_A          118 QELGPGLFRGLAALQYLYLQDNA--L-QALPDD-TF----------RDLGNLTHLFLHGN----------RISSVPERAF  173 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC--C-CCCCTT-TT----------TTCTTCCEEECCSS----------CCCEECTTTT
T ss_pred             CEECHhHhhCCcCCCEEECCCCc--c-cccCHh-Hh----------ccCCCccEEECCCC----------cccccCHHHh
Confidence            77754 343 8899999876332  1 111100 01          33444444444332          1222211111


Q ss_pred             ccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375          159 SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC  237 (311)
Q Consensus       159 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c  237 (311)
                      ..+++|+.|++++ .+..                ..+.....+++|+.|++++| ++++ .++..+..+++|+.|++++|
T Consensus       174 ~~l~~L~~L~l~~n~l~~----------------~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          174 RGLHSLDRLLLHQNRVAH----------------VHPHAFRDLGRLMTLYLFAN-NLSA-LPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             TTCTTCCEEECCSSCCCE----------------ECTTTTTTCTTCCEEECCSS-CCSC-CCHHHHTTCTTCCEEECCSS
T ss_pred             cCccccCEEECCCCcccc----------------cCHhHccCcccccEeeCCCC-cCCc-CCHHHcccCcccCEEeccCC
Confidence            4566777777765 1110                11223455678888888888 7776 45556777888888888877


Q ss_pred             cC
Q 039375          238 RA  239 (311)
Q Consensus       238 ~~  239 (311)
                      +.
T Consensus       236 ~~  237 (285)
T 1ozn_A          236 PW  237 (285)
T ss_dssp             CE
T ss_pred             Cc
Confidence            64

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.49  E-value=1.9e-13  Score=116.86  Aligned_cols=197  Identities=17%  Similarity=0.168  Sum_probs=116.5

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      +.+++++++ +.++.+|..+ .  .+|++|++++|.+. .+. +         ..++.+++|++|+++.|.+..+|..+.
T Consensus        17 ~~~~l~~~~-~~l~~ip~~~-~--~~l~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l~~i~~~~~   81 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAIPSNI-P--ADTKKLDLQSNKLS-SLP-S---------KAFHRLTKLRLLYLNDNKLQTLPAGIF   81 (270)
T ss_dssp             TTTEEECTT-SCCSSCCSCC-C--TTCSEEECCSSCCS-CCC-T---------TSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCEEEccC-CCCCccCCCC-C--CCCCEEECcCCCCC-eeC-H---------HHhcCCCCCCEEECCCCccCeeChhhh
Confidence            578889988 7888888765 3  57899999999887 442 3         567888999999998888888887652


Q ss_pred             --cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           89 --ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        89 --l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                        +++|+.++++.+.   +..+|.. .+          ..+++++.+.+.++          .++.+.......+++|++
T Consensus        82 ~~l~~L~~L~l~~n~---l~~~~~~-~~----------~~l~~L~~L~l~~n----------~l~~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           82 KELKNLETLWVTDNK---LQALPIG-VF----------DQLVNLAELRLDRN----------QLKSLPPRVFDSLTKLTY  137 (270)
T ss_dssp             SSCTTCCEEECCSSC---CCCCCTT-TT----------TTCSSCCEEECCSS----------CCCCCCTTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCc---CCcCCHh-Hc----------ccccCCCEEECCCC----------ccCeeCHHHhCcCcCCCE
Confidence              7888888775322   1111100 01          23334444333221          111111111145667777


Q ss_pred             EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEec
Q 039375          167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVI  245 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~  245 (311)
                      |++++ .+...+                +..+..+++|+.|++++| +++. .++..+..+++|++|++++|. +..+..
T Consensus       138 L~Ls~n~l~~~~----------------~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~  198 (270)
T 2o6q_A          138 LSLGYNELQSLP----------------KGVFDKLTSLKELRLYNN-QLKR-VPEGAFDKLTELKTLKLDNNQ-LKRVPE  198 (270)
T ss_dssp             EECCSSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred             EECCCCcCCccC----------------HhHccCCcccceeEecCC-cCcE-eChhHhccCCCcCEEECCCCc-CCcCCH
Confidence            77765 111110                111345677788888777 6766 444556677778888887664 333321


Q ss_pred             cCCcccccccccccccceeeccccc
Q 039375          246 NDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       246 ~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                             .....+++|+.|.+.+++
T Consensus       199 -------~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          199 -------GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             -------TTTTTCTTCCEEECCSSC
T ss_pred             -------HHhccccCCCEEEecCCC
Confidence                   112346677777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=9.4e-14  Score=121.12  Aligned_cols=191  Identities=17%  Similarity=0.142  Sum_probs=123.4

Q ss_pred             CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      .++.+|++|++++ +.++.+|. + ..+++|++|++++|.+. .+  +         . ++.+++|+.|++++|.+..++
T Consensus        38 ~~l~~L~~L~l~~-~~i~~l~~-~-~~l~~L~~L~L~~n~i~-~~--~---------~-~~~l~~L~~L~L~~n~l~~~~  101 (308)
T 1h6u_A           38 ADLDGITTLSAFG-TGVTTIEG-V-QYLNNLIGLELKDNQIT-DL--A---------P-LKNLTKITELELSGNPLKNVS  101 (308)
T ss_dssp             HHHHTCCEEECTT-SCCCCCTT-G-GGCTTCCEEECCSSCCC-CC--G---------G-GTTCCSCCEEECCSCCCSCCG
T ss_pred             HHcCCcCEEEeeC-CCccCchh-h-hccCCCCEEEccCCcCC-CC--h---------h-HccCCCCCEEEccCCcCCCch
Confidence            4578999999999 57888874 4 99999999999999887 55  3         3 889999999999999988887


Q ss_pred             cccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccccc
Q 039375           85 EGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLT  164 (311)
Q Consensus        85 ~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L  164 (311)
                      ....+++|+.++++.+.   +..++   .+          ..+++++.+.+..+          .++.+..  ...+++|
T Consensus       102 ~~~~l~~L~~L~l~~n~---l~~~~---~l----------~~l~~L~~L~l~~n----------~l~~~~~--l~~l~~L  153 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQ---ITDVT---PL----------AGLSNLQVLYLDLN----------QITNISP--LAGLTNL  153 (308)
T ss_dssp             GGTTCTTCCEEECTTSC---CCCCG---GG----------TTCTTCCEEECCSS----------CCCCCGG--GGGCTTC
T ss_pred             hhcCCCCCCEEECCCCC---CCCch---hh----------cCCCCCCEEECCCC----------ccCcCcc--ccCCCCc
Confidence            54458899998875322   11111   11          33444444444322          1111110  1556677


Q ss_pred             ceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          165 VSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      +.|++++.  .+...               .....+++|+.|++++| +++++ +  .+..+++|+.|++++|.. ..+.
T Consensus       154 ~~L~l~~n--~l~~~---------------~~l~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~N~l-~~~~  211 (308)
T 1h6u_A          154 QYLSIGNA--QVSDL---------------TPLANLSKLTTLKADDN-KISDI-S--PLASLPNLIEVHLKNNQI-SDVS  211 (308)
T ss_dssp             CEEECCSS--CCCCC---------------GGGTTCTTCCEEECCSS-CCCCC-G--GGGGCTTCCEEECTTSCC-CBCG
T ss_pred             cEEEccCC--cCCCC---------------hhhcCCCCCCEEECCCC-ccCcC-h--hhcCCCCCCEEEccCCcc-Cccc
Confidence            77777651  01000               01345678888888888 77763 2  267788888888887653 3321


Q ss_pred             ccCCcccccccccccccceeeccccc
Q 039375          245 INDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                      .         ...+++|++|.+.+++
T Consensus       212 ~---------l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          212 P---------LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             G---------GTTCTTCCEEEEEEEE
T ss_pred             c---------ccCCCCCCEEEccCCe
Confidence            1         2457778888887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.49  E-value=1e-12  Score=125.09  Aligned_cols=86  Identities=15%  Similarity=0.079  Sum_probs=49.5

Q ss_pred             ccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCC
Q 039375          200 FRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSAN  279 (311)
Q Consensus       200 l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~  279 (311)
                      +++++.|++++|..... ..+..+..+++|++|++++|. +..+..       .....+++|++|.++++ +++.+.+. 
T Consensus       468 ~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N~-L~~l~~-------~~f~~l~~L~~L~Ls~N-~l~~l~~~-  536 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQCQ-LEQLSP-------TAFNSLSSLQVLNMSHN-NFFSLDTF-  536 (635)
T ss_dssp             CTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTSC-CCEECT-------TTTTTCTTCCEEECTTS-CCCBCCCG-
T ss_pred             chhhhhhhhhhcccccc-cCchhhhhccccCEEECCCCc-cCCcCh-------HHHcCCCCCCEEECCCC-cCCCCChh-
Confidence            44556666665522332 233455666667777776653 333322       12345777888888876 45555321 


Q ss_pred             ceecCCCccEEEEecCC
Q 039375          280 YTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       280 ~~~~~~~L~~L~i~~c~  296 (311)
                      .+..+++|++|+++++.
T Consensus       537 ~~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          537 PYKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             GGTTCTTCCEEECTTSC
T ss_pred             HHhCCCCCCEEECCCCc
Confidence            23467888888888763

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.48  E-value=1.1e-13  Score=123.00  Aligned_cols=86  Identities=23%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++++++|++|++++ +.++.++++.++++++|++|++++|.+. .+. +         ..++.+++|++|++++|.+..
T Consensus        71 ~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~  138 (353)
T 2z80_A           71 DLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLS-S---------SWFKPLSSLTFLNLLGNPYKT  138 (353)
T ss_dssp             TTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCS-SCC-H---------HHHTTCTTCSEEECTTCCCSS
T ss_pred             HhccCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCC-cCC-H---------hHhCCCccCCEEECCCCCCcc
Confidence            578899999999999 6888776554499999999999999887 551 2         337889999999999988888


Q ss_pred             ccc--cc-ccccCcEEEEEec
Q 039375           83 LQE--GF-LARKLERFKISIG  100 (311)
Q Consensus        83 lp~--~~-~l~~L~~l~~~~~  100 (311)
                      +|.  .+ .+++|+.++++.+
T Consensus       139 l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          139 LGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             SCSSCSCTTCTTCCEEEEEES
T ss_pred             cCchhhhccCCCCcEEECCCC
Confidence            887  34 3889999988754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.48  E-value=1.5e-13  Score=117.55  Aligned_cols=178  Identities=17%  Similarity=0.164  Sum_probs=123.3

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      .+|++|++++ +.++.+|+..++++++|++|++++|.+. .+. +         ..++.+++|++|+++.|.+..+|...
T Consensus        37 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~-~---------~~~~~l~~L~~L~l~~n~l~~~~~~~  104 (270)
T 2o6q_A           37 ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP-A---------GIFKELKNLETLWVTDNKLQALPIGV  104 (270)
T ss_dssp             TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC-T---------TTTSSCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccC-eeC-h---------hhhcCCCCCCEEECCCCcCCcCCHhH
Confidence            5799999999 6888888754599999999999999987 552 2         34578999999999999988888755


Q ss_pred             --ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           88 --LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        88 --~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                        .+++|+.++++.+.  + ..++.. .+          +.+++++.+.+..+          .++.+.......+++|+
T Consensus       105 ~~~l~~L~~L~l~~n~--l-~~~~~~-~~----------~~l~~L~~L~Ls~n----------~l~~~~~~~~~~l~~L~  160 (270)
T 2o6q_A          105 FDQLVNLAELRLDRNQ--L-KSLPPR-VF----------DSLTKLTYLSLGYN----------ELQSLPKGVFDKLTSLK  160 (270)
T ss_dssp             TTTCSSCCEEECCSSC--C-CCCCTT-TT----------TTCTTCCEEECCSS----------CCCCCCTTTTTTCTTCC
T ss_pred             cccccCCCEEECCCCc--c-CeeCHH-Hh----------CcCcCCCEEECCCC----------cCCccCHhHccCCcccc
Confidence              38899999886332  1 111100 11          44555555555432          12222111115678899


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      .|++++ .+....                +..+..+++|+.|++++| +++. .+...+..+++|+.|++++|+.
T Consensus       161 ~L~L~~n~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          161 ELRLYNNQLKRVP----------------EGAFDKLTELKTLKLDNN-QLKR-VPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EEECCSSCCSCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             eeEecCCcCcEeC----------------hhHhccCCCcCEEECCCC-cCCc-CCHHHhccccCCCEEEecCCCe
Confidence            999876 111111                112456789999999999 8887 5666788899999999998874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.48  E-value=1.8e-14  Score=126.15  Aligned_cols=78  Identities=26%  Similarity=0.214  Sum_probs=62.0

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..++.+++|++|++++ +.+..+++ + +.+++|++|++++|.+. .+  +             ..++|+.|+++.|.+.
T Consensus        52 ~~~~~l~~L~~L~Ls~-n~l~~~~~-~-~~l~~L~~L~Ls~n~l~-~l--~-------------~~~~L~~L~l~~n~l~  112 (317)
T 3o53_A           52 ADLAPFTKLELLNLSS-NVLYETLD-L-ESLSTLRTLDLNNNYVQ-EL--L-------------VGPSIETLHAANNNIS  112 (317)
T ss_dssp             HHHTTCTTCCEEECTT-SCCEEEEE-E-TTCTTCCEEECCSSEEE-EE--E-------------ECTTCCEEECCSSCCS
T ss_pred             HHhhCCCcCCEEECCC-CcCCcchh-h-hhcCCCCEEECcCCccc-cc--c-------------CCCCcCEEECCCCccC
Confidence            3578899999999999 67877766 4 99999999999999886 44  2             3378899999888877


Q ss_pred             ccccccccccCcEEEEEe
Q 039375           82 ILQEGFLARKLERFKISI   99 (311)
Q Consensus        82 ~lp~~~~l~~L~~l~~~~   99 (311)
                      .++... +++|+.++++.
T Consensus       113 ~~~~~~-~~~L~~L~l~~  129 (317)
T 3o53_A          113 RVSCSR-GQGKKNIYLAN  129 (317)
T ss_dssp             EEEECC-CSSCEEEECCS
T ss_pred             CcCccc-cCCCCEEECCC
Confidence            776543 57788887753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.48  E-value=2.2e-13  Score=114.19  Aligned_cols=182  Identities=13%  Similarity=0.090  Sum_probs=123.0

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEecc-ccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGN-CSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~-~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      .++.+++|++|++++|..++.+|+..++++++|++|++++ |.+. .+. +         ..+..+++|+.|+++.|.+.
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~-~---------~~f~~l~~L~~L~l~~n~l~  118 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YID-P---------DALKELPLLKFLGIFNTGLK  118 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EEC-T---------TSEECCTTCCEEEEEEECCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcC-H---------HHhCCCCCCCEEeCCCCCCc
Confidence            5788999999999995459999875459999999999999 8887 552 3         56788999999999999988


Q ss_pred             ccccccccccCc---EEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375           82 ILQEGFLARKLE---RFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ  158 (311)
Q Consensus        82 ~lp~~~~l~~L~---~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~  158 (311)
                      .+|....+.+|+   .++++.+.                                               .++.+.....
T Consensus       119 ~lp~~~~l~~L~~L~~L~l~~N~-----------------------------------------------~l~~i~~~~~  151 (239)
T 2xwt_C          119 MFPDLTKVYSTDIFFILEITDNP-----------------------------------------------YMTSIPVNAF  151 (239)
T ss_dssp             SCCCCTTCCBCCSEEEEEEESCT-----------------------------------------------TCCEECTTTT
T ss_pred             cccccccccccccccEEECCCCc-----------------------------------------------chhhcCcccc
Confidence            898733466666   66665220                                               0111100000


Q ss_pred             ccccccc-eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccC-CCCCEEeec
Q 039375          159 SRITLTV-SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTL-VRLVTVQVY  235 (311)
Q Consensus       159 ~~~~~L~-~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l-~~L~~L~l~  235 (311)
                      ..+++|+ .|++++ .+..++                 ......++|+.|++++|+.++. .++..+..+ ++|+.|+++
T Consensus       152 ~~l~~L~~~L~l~~n~l~~i~-----------------~~~~~~~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          152 QGLCNETLTLKLYNNGFTSVQ-----------------GYAFNGTKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             TTTBSSEEEEECCSCCCCEEC-----------------TTTTTTCEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECT
T ss_pred             cchhcceeEEEcCCCCCcccC-----------------HhhcCCCCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECC
Confidence            3455666 666654 111111                 0111126799999999944887 555677888 999999999


Q ss_pred             cCcCceEEeccCCcccccccccccccceeecccccc
Q 039375          236 GCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDS  271 (311)
Q Consensus       236 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~  271 (311)
                      ++. +..+..          ..|++|+.|.+.++..
T Consensus       214 ~N~-l~~l~~----------~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          214 QTS-VTALPS----------KGLEHLKELIARNTWT  238 (239)
T ss_dssp             TCC-CCCCCC----------TTCTTCSEEECTTC--
T ss_pred             CCc-cccCCh----------hHhccCceeeccCccC
Confidence            765 444421          3688899998887654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.47  E-value=2.6e-13  Score=116.29  Aligned_cols=198  Identities=19%  Similarity=0.167  Sum_probs=115.3

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-   86 (311)
                      ++|++|++++ +.++.+++..++++++|++|++++|.+. .+. +         ..++.+++|++|++++|.+..++.. 
T Consensus        28 ~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIE-D---------GAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             TTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCC-EEC-T---------TTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCC-ccC-H---------HHccCCcCCCEEECCCCccCccChhh
Confidence            4688999998 6788887644488899999999998887 442 3         5678888999999988887776643 


Q ss_pred             c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                      + .+++|+.+++..+.  . ..                                          +....+   ..+++|+
T Consensus        96 ~~~l~~L~~L~l~~n~--l-~~------------------------------------------~~~~~~---~~l~~L~  127 (276)
T 2z62_A           96 FSGLSSLQKLVAVETN--L-AS------------------------------------------LENFPI---GHLKTLK  127 (276)
T ss_dssp             TTTCTTCCEEECTTSC--C-CC------------------------------------------STTCCC---TTCTTCC
T ss_pred             hcCCccccEEECCCCC--c-cc------------------------------------------cCchhc---ccCCCCC
Confidence            3 26777777654211  0 00                                          000000   3455666


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCC----EEeeccCcCc
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLV----TVQVYGCRAM  240 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~----~L~l~~c~~l  240 (311)
                      +|++++ .+...               ..|.....+++|+.|++++| ++++ .++..+..+++|+    .|++++|. +
T Consensus       128 ~L~l~~n~l~~~---------------~l~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~l~l~L~ls~n~-l  189 (276)
T 2z62_A          128 ELNVAHNLIQSF---------------KLPEYFSNLTNLEHLDLSSN-KIQS-IYCTDLRVLHQMPLLNLSLDLSLNP-M  189 (276)
T ss_dssp             EEECCSSCCCCC---------------CCCGGGGGCTTCCEEECCSS-CCCE-ECGGGGHHHHTCTTCCEEEECCSSC-C
T ss_pred             EEECcCCcccee---------------cCchhhccCCCCCEEECCCC-CCCc-CCHHHhhhhhhccccceeeecCCCc-c
Confidence            666654 11000               00122445667777777777 6666 3444455555555    67776554 3


Q ss_pred             eEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEe
Q 039375          241 TEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVI  293 (311)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~  293 (311)
                      ..+...        .....+|++|.++++. ++.+... ....+++|++|++.
T Consensus       190 ~~~~~~--------~~~~~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~  232 (276)
T 2z62_A          190 NFIQPG--------AFKEIRLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLH  232 (276)
T ss_dssp             CEECTT--------SSCSCCEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECC
T ss_pred             cccCcc--------ccCCCcccEEECCCCc-eeecCHh-HhcccccccEEEcc
Confidence            333211        1123367777777654 5555321 22456777777776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.46  E-value=6.9e-14  Score=119.75  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      ...+.+|+.|++++ +.++.++.  ++.+++|++|++++|.+. .+            ..++.+++|++|++++|.+..+
T Consensus        37 ~~~l~~L~~L~l~~-~~i~~~~~--l~~l~~L~~L~l~~n~l~-~~------------~~l~~l~~L~~L~L~~n~l~~~  100 (272)
T 3rfs_A           37 QNELNSIDQIIANN-SDIKSVQG--IQYLPNVRYLALGGNKLH-DI------------SALKELTNLTYLILTGNQLQSL  100 (272)
T ss_dssp             HHHHTTCCEEECTT-SCCCCCTT--GGGCTTCCEEECTTSCCC-CC------------GGGTTCTTCCEEECTTSCCCCC
T ss_pred             cccccceeeeeeCC-CCcccccc--cccCCCCcEEECCCCCCC-Cc------------hhhcCCCCCCEEECCCCccCcc
Confidence            34577899999998 56777765  488999999999998876 33            6778889999999998888877


Q ss_pred             cccc--ccccCcEEEEE
Q 039375           84 QEGF--LARKLERFKIS   98 (311)
Q Consensus        84 p~~~--~l~~L~~l~~~   98 (311)
                      +...  .+++|+.++++
T Consensus       101 ~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A          101 PNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             CTTTTTTCTTCCEEECT
T ss_pred             ChhHhcCCcCCCEEECC
Confidence            7654  37888888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.42  E-value=5.6e-14  Score=122.75  Aligned_cols=81  Identities=16%  Similarity=0.044  Sum_probs=47.7

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA  278 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~  278 (311)
                      .+++|+.|++++| ++++..+...+..+++|++|++++|.. +.+..          ..+++|++|+++++ +++.+  +
T Consensus       226 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~----------~~~~~L~~L~Ls~N-~l~~~--p  290 (312)
T 1wwl_A          226 ARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPK----------GLPAKLSVLDLSYN-RLDRN--P  290 (312)
T ss_dssp             TTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCS----------SCCSEEEEEECCSS-CCCSC--C
T ss_pred             cCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCcc-Chhhh----------hccCCceEEECCCC-CCCCC--h
Confidence            3467777777777 666532224455567777777776653 33311          11267777777765 35555  2


Q ss_pred             CceecCCCccEEEEecC
Q 039375          279 NYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       279 ~~~~~~~~L~~L~i~~c  295 (311)
                      . ...+++|++|++.+.
T Consensus       291 ~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          291 S-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             C-TTTSCEEEEEECTTC
T ss_pred             h-HhhCCCCCEEeccCC
Confidence            1 445677777777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.41  E-value=1.4e-12  Score=120.83  Aligned_cols=217  Identities=17%  Similarity=0.134  Sum_probs=144.2

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++.+++|++|+|++ +.++.+++ + +.+++|++|++++|.+. .+  |             ..++|+.|++++|.+
T Consensus        51 ~~~~~~l~~L~~L~Ls~-N~l~~~~~-l-~~l~~L~~L~Ls~N~l~-~l--~-------------~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           51 AADLAPFTKLELLNLSS-NVLYETLD-L-ESLSTLRTLDLNNNYVQ-EL--L-------------VGPSIETLHAANNNI  111 (487)
T ss_dssp             GGGGTTCTTCCEEECTT-SCCEEEEE-C-TTCTTCCEEECCSSEEE-EE--E-------------ECTTCCEEECCSSCC
T ss_pred             HHHHhCCCCCCEEEeeC-CCCCCCcc-c-ccCCCCCEEEecCCcCC-CC--C-------------CCCCcCEEECcCCcC
Confidence            35688999999999999 67776666 4 99999999999999887 44  2             238999999999998


Q ss_pred             cccccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc-c
Q 039375           81 SILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ-S  159 (311)
Q Consensus        81 ~~lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~-~  159 (311)
                      ..++.. .+++|+.++++.+.  +.+..|.  .+          +.++.++.+.+..+          .++...+... .
T Consensus       112 ~~~~~~-~l~~L~~L~L~~N~--l~~~~~~--~~----------~~l~~L~~L~Ls~N----------~l~~~~~~~l~~  166 (487)
T 3oja_A          112 SRVSCS-RGQGKKNIYLANNK--ITMLRDL--DE----------GCRSRVQYLDLKLN----------EIDTVNFAELAA  166 (487)
T ss_dssp             CCEEEC-CCSSCEEEECCSSC--CCSGGGB--CG----------GGGSSEEEEECTTS----------CCCEEEGGGGGG
T ss_pred             CCCCcc-ccCCCCEEECCCCC--CCCCCch--hh----------cCCCCCCEEECCCC----------CCCCcChHHHhh
Confidence            877764 35789988876332  2221111  11          34455555444332          2333222221 3


Q ss_pred             cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      .+++|+.|++++ .+...                  .....+++|+.|++++| ++++ .++. +..+++|+.|++++|.
T Consensus       167 ~l~~L~~L~Ls~N~l~~~------------------~~~~~l~~L~~L~Ls~N-~l~~-~~~~-~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDV------------------KGQVVFAKLKTLDLSSN-KLAF-MGPE-FQSAAGVTWISLRNNK  225 (487)
T ss_dssp             GTTTCCEEECTTSCCCEE------------------ECCCCCTTCCEEECCSS-CCCE-ECGG-GGGGTTCSEEECTTSC
T ss_pred             hCCcccEEecCCCccccc------------------cccccCCCCCEEECCCC-CCCC-CCHh-HcCCCCccEEEecCCc
Confidence            678999999976 11111                  01234789999999999 8988 4444 7889999999999876


Q ss_pred             CceEEeccCCcccccccccccccceeeccccccc-ceeccCCceecCCCccEEEEe
Q 039375          239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLDSL-TSFCSANYTFKFPSLEYLEVI  293 (311)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l-~~~~~~~~~~~~~~L~~L~i~  293 (311)
                      . ..+.        .....+++|+.|.+.+++-. ..+  +.....++.|+.+.+.
T Consensus       226 l-~~lp--------~~l~~l~~L~~L~l~~N~l~c~~~--~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          226 L-VLIE--------KALRFSQNLEHFDLRGNGFHCGTL--RDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             C-CEEC--------TTCCCCTTCCEEECTTCCBCHHHH--HHHHTTCHHHHHHHHH
T ss_pred             C-cccc--------hhhccCCCCCEEEcCCCCCcCcch--HHHHHhCCCCcEEecc
Confidence            4 4442        22356789999999987532 122  1123456667666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.41  E-value=1.4e-12  Score=112.73  Aligned_cols=175  Identities=17%  Similarity=0.108  Sum_probs=121.5

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      +++++|++++ +.++.+++..+..+++|++|++++|.+. .+  +          ..+.+++|+.|++++|.+..+|..+
T Consensus        31 ~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~--~----------~~~~l~~L~~L~Ls~N~l~~l~~~~   96 (290)
T 1p9a_G           31 KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELT-KL--Q----------VDGTLPVLGTLDLSHNQLQSLPLLG   96 (290)
T ss_dssp             TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCC-EE--E----------CCSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccC-cc--c----------CCCCCCcCCEEECCCCcCCcCchhh
Confidence            6899999999 7888886554599999999999999987 55  2          2378999999999999999999877


Q ss_pred             c-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           88 L-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        88 ~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                      . +++|+.++++.+.  + ..+|.. .+          ..+++++.+.+.++          .++.+.......+++|+.
T Consensus        97 ~~l~~L~~L~l~~N~--l-~~l~~~-~~----------~~l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           97 QTLPALTVLDVSFNR--L-TSLPLG-AL----------RGLGELQELYLKGN----------ELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             TTCTTCCEEECCSSC--C-CCCCSS-TT----------TTCTTCCEEECTTS----------CCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCc--C-cccCHH-HH----------cCCCCCCEEECCCC----------CCCccChhhcccccCCCE
Confidence            4 8999999886332  1 112100 11          44555655555432          122221111156778999


Q ss_pred             EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      |++++ .+..++                +.....+++|+.|++++| +++.+  +..+...++|+.|++++|+.
T Consensus       153 L~L~~N~l~~l~----------------~~~~~~l~~L~~L~L~~N-~l~~i--p~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          153 LSLANNNLTELP----------------AGLLNGLENLDTLLLQEN-SLYTI--PKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECTTSCCSCCC----------------TTTTTTCTTCCEEECCSS-CCCCC--CTTTTTTCCCSEEECCSCCB
T ss_pred             EECCCCcCCccC----------------HHHhcCcCCCCEEECCCC-cCCcc--ChhhcccccCCeEEeCCCCc
Confidence            99876 111111                111356789999999999 88863  34566778999999998875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.40  E-value=3.5e-12  Score=121.21  Aligned_cols=222  Identities=18%  Similarity=0.142  Sum_probs=117.1

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      ++++|++++ +.++.+|..+ .  ++|++|++++|.+. .+  |         .   .+++|++|++++|.+..+|.  .
T Consensus        41 ~l~~L~ls~-n~L~~lp~~l-~--~~L~~L~L~~N~l~-~l--p---------~---~l~~L~~L~Ls~N~l~~lp~--~   99 (622)
T 3g06_A           41 GNAVLNVGE-SGLTTLPDCL-P--AHITTLVIPDNNLT-SL--P---------A---LPPELRTLEVSGNQLTSLPV--L   99 (622)
T ss_dssp             CCCEEECCS-SCCSCCCSCC-C--TTCSEEEECSCCCS-CC--C---------C---CCTTCCEEEECSCCCSCCCC--C
T ss_pred             CCcEEEecC-CCcCccChhh-C--CCCcEEEecCCCCC-CC--C---------C---cCCCCCEEEcCCCcCCcCCC--C
Confidence            467777777 5667777655 3  57777777777765 55  3         2   45667777777777666666  4


Q ss_pred             cccCcEEEEEecCcccccccccccccccccccccccccccccccccccC-----------ceeeEEccccCCcceecccc
Q 039375           89 ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKP-----------DFTDICSMKLQAINNVEYIS  157 (311)
Q Consensus        89 l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~l~~L~l~~~~~~~~~~~~~  157 (311)
                      +++|+.++++.+.   +..+|               ...++++.+.+.+           +++.|.+..+ .++.+.   
T Consensus       100 l~~L~~L~Ls~N~---l~~l~---------------~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N-~l~~l~---  157 (622)
T 3g06_A          100 PPGLLELSIFSNP---LTHLP---------------ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLP---  157 (622)
T ss_dssp             CTTCCEEEECSCC---CCCCC---------------CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCC---
T ss_pred             CCCCCEEECcCCc---CCCCC---------------CCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCC-cCCCcC---
Confidence            5667776665322   11111               1112222222221           1333333322 121111   


Q ss_pred             cccccccceEEEec-eEecccccccCcccccccEEeCC---CCcccccCccEEEEecCCCceeecCccccccCCCCCEEe
Q 039375          158 QSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLP---SSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQ  233 (311)
Q Consensus       158 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~---~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~  233 (311)
                       ..+++|+.|++++ .+..++   .....|..|.+.+-   .....+++|+.|.+++| .++.+ +    ..+++|+.|+
T Consensus       158 -~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N-~l~~l-~----~~~~~L~~L~  227 (622)
T 3g06_A          158 -ALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSL-P----ALPSGLKELI  227 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC-C----CCCTTCCEEE
T ss_pred             -CccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccchhhEEECcCC-ccccc-C----CCCCCCCEEE
Confidence             2233455555544 111111   11123333332220   00113456777777777 66652 2    1347788888


Q ss_pred             eccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCeecC
Q 039375          234 VYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFT  302 (311)
Q Consensus       234 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~  302 (311)
                      +++|. +..+.           ..+++|+.|.++++ .++.+..     .+++|++|++++| +++.+|
T Consensus       228 Ls~N~-L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp  277 (622)
T 3g06_A          228 VSGNR-LTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLP  277 (622)
T ss_dssp             CCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCC
T ss_pred             ccCCc-cCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCC
Confidence            88664 33331           35688999999887 5666632     6789999999887 444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.39  E-value=1.6e-12  Score=113.23  Aligned_cols=171  Identities=14%  Similarity=0.170  Sum_probs=124.3

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .+..+++|++|++++ +.++.+++ + +++++|++|++++|.+. .+            ..++.+++|+.|++++|.+..
T Consensus        58 ~~~~l~~L~~L~L~~-n~i~~~~~-~-~~l~~L~~L~L~~n~l~-~~------------~~~~~l~~L~~L~l~~n~l~~  121 (308)
T 1h6u_A           58 GVQYLNNLIGLELKD-NQITDLAP-L-KNLTKITELELSGNPLK-NV------------SAIAGLQSIKTLDLTSTQITD  121 (308)
T ss_dssp             TGGGCTTCCEEECCS-SCCCCCGG-G-TTCCSCCEEECCSCCCS-CC------------GGGTTCTTCCEEECTTSCCCC
T ss_pred             hhhccCCCCEEEccC-CcCCCChh-H-ccCCCCCEEEccCCcCC-Cc------------hhhcCCCCCCEEECCCCCCCC
Confidence            467899999999999 68898888 5 99999999999999886 44            568899999999999999888


Q ss_pred             cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375           83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT  162 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~  162 (311)
                      ++....+++|+.++++.+..   ..++   .+          ..+++++.+.+..         + .++.+..  ...++
T Consensus       122 ~~~l~~l~~L~~L~l~~n~l---~~~~---~l----------~~l~~L~~L~l~~---------n-~l~~~~~--l~~l~  173 (308)
T 1h6u_A          122 VTPLAGLSNLQVLYLDLNQI---TNIS---PL----------AGLTNLQYLSIGN---------A-QVSDLTP--LANLS  173 (308)
T ss_dssp             CGGGTTCTTCCEEECCSSCC---CCCG---GG----------GGCTTCCEEECCS---------S-CCCCCGG--GTTCT
T ss_pred             chhhcCCCCCCEEECCCCcc---CcCc---cc----------cCCCCccEEEccC---------C-cCCCChh--hcCCC
Confidence            88744589999998863321   1111   11          4445555544433         2 2222211  16678


Q ss_pred             ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      +|+.|++++ .+...                  .....+++|+.|++++| +++++ +  .+..+++|+.|++++|..
T Consensus       174 ~L~~L~l~~n~l~~~------------------~~l~~l~~L~~L~L~~N-~l~~~-~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          174 KLTTLKADDNKISDI------------------SPLASLPNLIEVHLKNN-QISDV-S--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             TCCEEECCSSCCCCC------------------GGGGGCTTCCEEECTTS-CCCBC-G--GGTTCTTCCEEEEEEEEE
T ss_pred             CCCEEECCCCccCcC------------------hhhcCCCCCCEEEccCC-ccCcc-c--cccCCCCCCEEEccCCee
Confidence            899999876 11111                  11456789999999999 88874 2  378899999999998864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.39  E-value=1.9e-13  Score=125.62  Aligned_cols=229  Identities=14%  Similarity=0.009  Sum_probs=110.3

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCc-------------cE
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWL-------------TT   72 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L-------------~~   72 (311)
                      +.++|++|++++ +.++.+|+++ ++|++|++|++++|.+.+.+  |         .+++.+.+|             +.
T Consensus         9 ~~~~L~~L~l~~-n~l~~iP~~i-~~L~~L~~L~l~~n~~~~~~--p---------~~~~~l~~L~~l~l~~c~~~~l~~   75 (454)
T 1jl5_A            9 SNTFLQEPLRHS-SNLTEMPVEA-ENVKSKTEYYNAWSEWERNA--P---------PGNGEQREMAVSRLRDCLDRQAHE   75 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTS--C---------TTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred             ccccchhhhccc-CchhhCChhH-hcccchhhhhccCCcccccC--C---------cccccchhcchhhhhhhhccCCCE
Confidence            368999999999 6779999997 99999999999999887666  6         666666554             77


Q ss_pred             EEEeecCccccccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccC-----------ceee
Q 039375           73 LEIDVKNDSILQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKP-----------DFTD  141 (311)
Q Consensus        73 L~l~~~~~~~lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~l~~  141 (311)
                      |++++++...+|..  .++|+.++++.+.  + ..+|..               .++++.+.+..           .++.
T Consensus        76 L~l~~~~l~~lp~~--~~~L~~L~l~~n~--l-~~lp~~---------------~~~L~~L~l~~n~l~~l~~~~~~L~~  135 (454)
T 1jl5_A           76 LELNNLGLSSLPEL--PPHLESLVASCNS--L-TELPEL---------------PQSLKSLLVDNNNLKALSDLPPLLEY  135 (454)
T ss_dssp             EECTTSCCSCCCSC--CTTCSEEECCSSC--C-SSCCCC---------------CTTCCEEECCSSCCSCCCSCCTTCCE
T ss_pred             EEecCCccccCCCC--cCCCCEEEccCCc--C-Cccccc---------------cCCCcEEECCCCccCcccCCCCCCCE
Confidence            88877777777663  3577777665222  1 112210               12222222221           2444


Q ss_pred             EEccccCCcceecccccccccccceEEEec-eEecccccccCcccccccEEeC-----CCCcccccCccEEEEecCCCce
Q 039375          142 ICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILL-----PSSSVSFRNLTKLVAVGCKELI  215 (311)
Q Consensus       142 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~-----~~~~~~l~~L~~L~l~~~~~l~  215 (311)
                      |.+..+ .++.+. . ...+++|++|++++ .+..++   .....++.+.+.+     -.....+++|+.|++++| +++
T Consensus       136 L~L~~n-~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N-~l~  208 (454)
T 1jl5_A          136 LGVSNN-QLEKLP-E-LQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLK  208 (454)
T ss_dssp             EECCSS-CCSSCC-C-CTTCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCS
T ss_pred             EECcCC-CCCCCc-c-cCCCCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC-cCC
Confidence            555433 122211 1 15666777777765 222111   1112333333222     113455667777777777 555


Q ss_pred             eecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          216 HLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       216 ~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      .+ + .   ..++|+.|++++|.. ..+.         ....+++|++|.+.++ .++.+..     .+++|++|++++|
T Consensus       209 ~l-~-~---~~~~L~~L~l~~n~l-~~lp---------~~~~l~~L~~L~l~~N-~l~~l~~-----~~~~L~~L~l~~N  267 (454)
T 1jl5_A          209 KL-P-D---LPLSLESIVAGNNIL-EELP---------ELQNLPFLTTIYADNN-LLKTLPD-----LPPSLEALNVRDN  267 (454)
T ss_dssp             SC-C-C---CCTTCCEEECCSSCC-SSCC---------CCTTCTTCCEEECCSS-CCSSCCS-----CCTTCCEEECCSS
T ss_pred             cC-C-C---CcCcccEEECcCCcC-Cccc---------ccCCCCCCCEEECCCC-cCCcccc-----cccccCEEECCCC
Confidence            42 1 1   124677777776642 2331         1356788888888875 3444421     3467777777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.38  E-value=1.5e-12  Score=111.51  Aligned_cols=183  Identities=16%  Similarity=0.143  Sum_probs=116.3

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..++++++|++|++++ +.++.+++..++++++|++|++++|.+. .+. +         ..++.+++|++|+++.|...
T Consensus        46 ~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l~  113 (276)
T 2z62_A           46 YSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLA-L---------GAFSGLSSLQKLVAVETNLA  113 (276)
T ss_dssp             TTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCC-EEC-T---------TTTTTCTTCCEEECTTSCCC
T ss_pred             hHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCCccC-ccC-h---------hhhcCCccccEEECCCCCcc
Confidence            3678899999999999 6888887755599999999999999987 442 4         67889999999999999888


Q ss_pred             cccc-cc-ccccCcEEEEEecCccccc-ccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc
Q 039375           82 ILQE-GF-LARKLERFKISIGNESFMA-SLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ  158 (311)
Q Consensus        82 ~lp~-~~-~l~~L~~l~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~  158 (311)
                      .++. .+ .+++|+.++++.+.  +.. .+|.  .+          +.+++++.+.+..+          .++.+.....
T Consensus       114 ~~~~~~~~~l~~L~~L~l~~n~--l~~~~l~~--~~----------~~l~~L~~L~Ls~N----------~l~~~~~~~~  169 (276)
T 2z62_A          114 SLENFPIGHLKTLKELNVAHNL--IQSFKLPE--YF----------SNLTNLEHLDLSSN----------KIQSIYCTDL  169 (276)
T ss_dssp             CSTTCCCTTCTTCCEEECCSSC--CCCCCCCG--GG----------GGCTTCCEEECCSS----------CCCEECGGGG
T ss_pred             ccCchhcccCCCCCEEECcCCc--cceecCch--hh----------ccCCCCCEEECCCC----------CCCcCCHHHh
Confidence            7776 34 38899999886332  111 1121  11          34444554444332          1222211111


Q ss_pred             ccccccc----eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEe
Q 039375          159 SRITLTV----SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQ  233 (311)
Q Consensus       159 ~~~~~L~----~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~  233 (311)
                      ..+++|+    +|++++ .+...                 +.......+|+.|++++| +++. .+...+..+++|+.|+
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~-----------------~~~~~~~~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~  230 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFI-----------------QPGAFKEIRLKELALDTN-QLKS-VPDGIFDRLTSLQKIW  230 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEE-----------------CTTSSCSCCEEEEECCSS-CCSC-CCTTTTTTCCSCCEEE
T ss_pred             hhhhhccccceeeecCCCccccc-----------------CccccCCCcccEEECCCC-ceee-cCHhHhcccccccEEE
Confidence            3334444    444443 11100                 111122337888888888 7776 4555667788888888


Q ss_pred             eccCcC
Q 039375          234 VYGCRA  239 (311)
Q Consensus       234 l~~c~~  239 (311)
                      +++|+.
T Consensus       231 l~~N~~  236 (276)
T 2z62_A          231 LHTNPW  236 (276)
T ss_dssp             CCSSCB
T ss_pred             ccCCcc
Confidence            887664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.37  E-value=3.6e-12  Score=117.03  Aligned_cols=36  Identities=17%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccce
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVE   46 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~   46 (311)
                      ++|++|++++ +.++.+| ++ +++++|++|++++|.+.
T Consensus       131 ~~L~~L~L~~-n~l~~lp-~~-~~l~~L~~L~l~~N~l~  166 (454)
T 1jl5_A          131 PLLEYLGVSN-NQLEKLP-EL-QNSSFLKIIDVDNNSLK  166 (454)
T ss_dssp             TTCCEEECCS-SCCSSCC-CC-TTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcC-CCCCCCc-cc-CCCCCCCEEECCCCcCc
Confidence            5788888888 5777788 44 88888888888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.36  E-value=1.7e-14  Score=127.08  Aligned_cols=64  Identities=17%  Similarity=0.064  Sum_probs=38.3

Q ss_pred             ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccc
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDL  269 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~  269 (311)
                      ..+++|+.|++++|..+++ ..+..+..+++|++|++++|..+....       ......+++|++|.+.+|
T Consensus       219 ~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~-------~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPET-------LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGG-------GGGGGGCTTCCEEECTTS
T ss_pred             hhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCCCCCHHH-------HHHHhcCCCCCEEeccCc
Confidence            3466777777777743554 334456667777777777775322110       011245777777777776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.35  E-value=3.1e-12  Score=108.09  Aligned_cols=174  Identities=17%  Similarity=0.176  Sum_probs=91.5

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF-   87 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~-   87 (311)
                      ..+++++++ +.++.+|.++ .  .+|++|++++|.+....  +         ..++.+++|++|++++|.+..++... 
T Consensus        15 ~~~~l~~~~-~~l~~~p~~~-~--~~l~~L~L~~n~l~~~~--~---------~~~~~l~~L~~L~L~~n~l~~~~~~~~   79 (251)
T 3m19_A           15 GKKEVDCQG-KSLDSVPSGI-P--ADTEKLDLQSTGLATLS--D---------ATFRGLTKLTWLNLDYNQLQTLSAGVF   79 (251)
T ss_dssp             GGTEEECTT-CCCSSCCSCC-C--TTCCEEECTTSCCCCCC--T---------TTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CCeEEecCC-CCccccCCCC-C--CCCCEEEccCCCcCccC--H---------hHhcCcccCCEEECCCCcCCccCHhHh
Confidence            456667776 5666777654 3  46777777777665222  3         45666777777777766666555432 


Q ss_pred             -ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           88 -LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        88 -~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                       .+++|+.++++.+.  +. .+|.. .+          ..+++++.+.+..+          .++.+.......+++|+.
T Consensus        80 ~~l~~L~~L~L~~n~--l~-~~~~~-~~----------~~l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~  135 (251)
T 3m19_A           80 DDLTELGTLGLANNQ--LA-SLPLG-VF----------DHLTQLDKLYLGGN----------QLKSLPSGVFDRLTKLKE  135 (251)
T ss_dssp             TTCTTCCEEECTTSC--CC-CCCTT-TT----------TTCTTCCEEECCSS----------CCCCCCTTTTTTCTTCCE
T ss_pred             ccCCcCCEEECCCCc--cc-ccChh-Hh----------cccCCCCEEEcCCC----------cCCCcChhHhccCCcccE
Confidence             26666666654221  11 11100 00          22233333333221          111111100044566777


Q ss_pred             EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      |++++ .+..+.                +..+..+++|+.|++++| +++. .++..+..+++|+.|++++|+.
T Consensus       136 L~Ls~N~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          136 LRLNTNQLQSIP----------------AGAFDKLTNLQTLSLSTN-QLQS-VPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             EECCSSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSCCB
T ss_pred             EECcCCcCCccC----------------HHHcCcCcCCCEEECCCC-cCCc-cCHHHHhCCCCCCEEEeeCCce
Confidence            77655 111110                112445677888888888 7776 4555667778888888877664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.35  E-value=3.5e-12  Score=109.07  Aligned_cols=172  Identities=15%  Similarity=0.092  Sum_probs=119.9

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++.+++|++|++++ +.+..++ .+ +++++|++|++++|.+. .+. +         ..++.+++|++|+++.|.+..
T Consensus        58 ~l~~l~~L~~L~l~~-n~l~~~~-~l-~~l~~L~~L~L~~n~l~-~~~-~---------~~~~~l~~L~~L~L~~n~l~~  123 (272)
T 3rfs_A           58 GIQYLPNVRYLALGG-NKLHDIS-AL-KELTNLTYLILTGNQLQ-SLP-N---------GVFDKLTNLKELVLVENQLQS  123 (272)
T ss_dssp             TGGGCTTCCEEECTT-SCCCCCG-GG-TTCTTCCEEECTTSCCC-CCC-T---------TTTTTCTTCCEEECTTSCCCC
T ss_pred             ccccCCCCcEEECCC-CCCCCch-hh-cCCCCCCEEECCCCccC-ccC-h---------hHhcCCcCCCEEECCCCcCCc
Confidence            577899999999999 6778776 44 99999999999999987 442 3         457889999999999999888


Q ss_pred             ccccc--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccc
Q 039375           83 LQEGF--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSR  160 (311)
Q Consensus        83 lp~~~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~  160 (311)
                      ++...  .+++|+.++++.+.  + ..+|                                             ......
T Consensus       124 ~~~~~~~~l~~L~~L~L~~n~--l-~~~~---------------------------------------------~~~~~~  155 (272)
T 3rfs_A          124 LPDGVFDKLTNLTYLNLAHNQ--L-QSLP---------------------------------------------KGVFDK  155 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC--C-CCCC---------------------------------------------TTTTTT
T ss_pred             cCHHHhccCCCCCEEECCCCc--c-CccC---------------------------------------------HHHhcc
Confidence            87753  37788888765221  0 0000                                             000044


Q ss_pred             ccccceEEEece-EecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          161 ITLTVSLFIRRG-IFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       161 ~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      +++|+.|++++. +....                +.....+++|+.|++++| +++. .++..+..+++|+.|++++|+.
T Consensus       156 l~~L~~L~l~~n~l~~~~----------------~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLP----------------EGVFDKLTQLKDLRLYQN-QLKS-VPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CTTCCEEECCSSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCCEEECCCCCcCccC----------------HHHhcCCccCCEEECCCC-cCCc-cCHHHHhCCcCCCEEEccCCCc
Confidence            567777777651 11110                112456789999999999 7887 5556678899999999998864


Q ss_pred             ceEEeccCCcccccccccccccceeecccc
Q 039375          240 MTEVVINDKEGVDIEEIVFSKLKALILCDL  269 (311)
Q Consensus       240 l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~  269 (311)
                      .               +.++.|+.+.+..+
T Consensus       218 ~---------------~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          218 D---------------CTCPGIRYLSEWIN  232 (272)
T ss_dssp             C---------------CCTTTTHHHHHHHH
T ss_pred             c---------------ccCcHHHHHHHHHH
Confidence            2               23556666666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.32  E-value=4.1e-13  Score=118.16  Aligned_cols=227  Identities=13%  Similarity=0.071  Sum_probs=143.9

Q ss_pred             CccEEecCCCCCCcccChhHHHhc--cccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc--cc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSL--IRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI--LQ   84 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L--~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~--lp   84 (311)
                      .++.+++++ +.+.  |.. +.++  .++++|++++|.+....            ..+..+++|+.|+++++.+..  ++
T Consensus        48 ~~~~l~l~~-~~~~--~~~-~~~~~~~~l~~L~l~~n~l~~~~------------~~~~~~~~L~~L~L~~~~l~~~~~~  111 (336)
T 2ast_B           48 LWQTLDLTG-KNLH--PDV-TGRLLSQGVIAFRCPRSFMDQPL------------AEHFSPFRVQHMDLSNSVIEVSTLH  111 (336)
T ss_dssp             TSSEEECTT-CBCC--HHH-HHHHHHTTCSEEECTTCEECSCC------------CSCCCCBCCCEEECTTCEECHHHHH
T ss_pred             hheeecccc-ccCC--HHH-HHhhhhccceEEEcCCccccccc------------hhhccCCCCCEEEccCCCcCHHHHH
Confidence            478899998 4444  333 4887  89999999999876333            446678999999998877543  56


Q ss_pred             cccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc-cccc
Q 039375           85 EGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ-SRIT  162 (311)
Q Consensus        85 ~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~-~~~~  162 (311)
                      ..+. +++|+.++++.+.  +....+.  .+          ..+++         ++.|.+..|..++....... ..++
T Consensus       112 ~~~~~~~~L~~L~L~~~~--l~~~~~~--~l----------~~~~~---------L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLR--LSDPIVN--TL----------AKNSN---------LVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             HHHTTBCCCSEEECTTCB--CCHHHHH--HH----------TTCTT---------CSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             HHHhhCCCCCEEeCcCcc--cCHHHHH--HH----------hcCCC---------CCEEECCCCCCCCHHHHHHHHhcCC
Confidence            5553 8899998875221  1111110  01          22233         45666666655554322222 6788


Q ss_pred             ccceEEEeceEecccccccCcccccccEEeCCCCccccc-CccEEEEecCC-CceeecCccccccCCCCCEEeeccCcCc
Q 039375          163 LTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFR-NLTKLVAVGCK-ELIHLVTSSTAKTLVRLVTVQVYGCRAM  240 (311)
Q Consensus       163 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~-~L~~L~l~~~~-~l~~l~~~~~l~~l~~L~~L~l~~c~~l  240 (311)
                      +|++|+++++ ..+....     +       +.....++ +|+.|++++|. .+++...+..+..+++|+.|++++|..+
T Consensus       169 ~L~~L~l~~~-~~l~~~~-----~-------~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  235 (336)
T 2ast_B          169 RLDELNLSWC-FDFTEKH-----V-------QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML  235 (336)
T ss_dssp             TCCEEECCCC-TTCCHHH-----H-------HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             CCCEEcCCCC-CCcChHH-----H-------HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC
Confidence            9999998761 0111000     0       01134578 99999999995 4543233456678999999999999854


Q ss_pred             eEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          241 TEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      ++..       ......+++|++|.+.+|..+..... .....+++|++|++.+|
T Consensus       236 ~~~~-------~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          236 KNDC-------FQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CGGG-------GGGGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             CHHH-------HHHHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence            4321       11235689999999999975433211 12346899999999887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.29  E-value=9e-13  Score=124.80  Aligned_cols=264  Identities=13%  Similarity=0.067  Sum_probs=125.4

Q ss_pred             CCCCccEEecCCCCCCc-----ccChhHHHhccccceEEeccccceeeeecccc------------------cccccccc
Q 039375            6 QVTKLRLLDLRDCFHLK-----VIAPNVISSLIRLEELCMGNCSVEWEVERANT------------------ERSNASLD   62 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~-----~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~------------------~~~~~~l~   62 (311)
                      .+++|++|++++ +.++     .++. ++.++++|++|++++|.+. .+  |..                  ........
T Consensus       190 ~~~~L~~L~L~~-n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~-~l--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  264 (592)
T 3ogk_B          190 HNTSLEVLNFYM-TEFAKISPKDLET-IARNCRSLVSVKVGDFEIL-EL--VGFFKAAANLEEFCGGSLNEDIGMPEKYM  264 (592)
T ss_dssp             HCCCCCEEECTT-CCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG-GG--HHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred             cCCCccEEEeec-cCCCccCHHHHHH-HHhhCCCCcEEeccCccHH-HH--HHHHhhhhHHHhhcccccccccchHHHHH
Confidence            467777777777 4444     2222 2366777777777777654 22  100                  00011123


Q ss_pred             ccCCCCCccEEEEeecCccccccccc-cccCcEEEEEecCccccc-ccccccccccccccccccccccccccccccC---
Q 039375           63 ELMLLPWLTTLEIDVKNDSILQEGFL-ARKLERFKISIGNESFMA-SLPVTKDWFRSRSHFLINHNHERLRELKLKP---  137 (311)
Q Consensus        63 ~l~~L~~L~~L~l~~~~~~~lp~~~~-l~~L~~l~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~---  137 (311)
                      .++.+++|+.|+++......+|..+. +++|+.++++.+.  ... .++            .+-..+++++.+.+..   
T Consensus       265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~--l~~~~~~------------~~~~~~~~L~~L~L~~~~~  330 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL--LETEDHC------------TLIQKCPNLEVLETRNVIG  330 (592)
T ss_dssp             CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC--CCHHHHH------------HHHTTCTTCCEEEEEGGGH
T ss_pred             HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc--CCHHHHH------------HHHHhCcCCCEEeccCccC
Confidence            44555666666665555555665553 6777777775222  100 000            0003334444444421   


Q ss_pred             ------------ceeeEEccc----------cCCcceeccccc-ccccccceEEEec-eEecc--cccccCcccccccEE
Q 039375          138 ------------DFTDICSMK----------LQAINNVEYISQ-SRITLTVSLFIRR-GIFNG--RMLRETFEEVGNDKI  191 (311)
Q Consensus       138 ------------~l~~L~l~~----------~~~~~~~~~~~~-~~~~~L~~L~l~~-~~~~~--~~~~~~~~~l~~L~~  191 (311)
                                  .++.|.+.+          |..++....... ..+++|++|++.. .+.+.  .........|+.+..
T Consensus       331 ~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l  410 (592)
T 3ogk_B          331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL  410 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEE
Confidence                        156666664          555543322221 4466777777743 11100  000000113333333


Q ss_pred             eC-----CC-----------CcccccCccEEEEecCCC-ceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccc
Q 039375          192 LL-----PS-----------SSVSFRNLTKLVAVGCKE-LIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIE  254 (311)
Q Consensus       192 ~~-----~~-----------~~~~l~~L~~L~l~~~~~-l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  254 (311)
                      .+     ..           ....+++|+.|+++.|.+ +++.........+++|+.|++++|......+       +.-
T Consensus       411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-------~~~  483 (592)
T 3ogk_B          411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL-------MEF  483 (592)
T ss_dssp             EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH-------HHH
T ss_pred             eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH-------HHH
Confidence            21     00           022366777777766532 3331111222346777777777665221110       001


Q ss_pred             cccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375          255 EIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       255 ~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      ...+++|++|++++|+ +...........+++|++|++++|.
T Consensus       484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            1346778888888776 4322111122357788888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.28  E-value=1.1e-11  Score=104.55  Aligned_cols=174  Identities=13%  Similarity=0.091  Sum_probs=101.9

Q ss_pred             cccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-c-ccccCcEEEEEecCccccccccc
Q 039375           33 IRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-F-LARKLERFKISIGNESFMASLPV  110 (311)
Q Consensus        33 ~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-~-~l~~L~~l~~~~~~~~~~~~~p~  110 (311)
                      .+.++++.+++.+. .+  |         ..+.  ++|+.|+++++.+..++.. + .+++|+.++++.+.  +....+.
T Consensus        14 ~~~~~l~~~~~~l~-~~--p---------~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~   77 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SV--P---------SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAG   77 (251)
T ss_dssp             GGGTEEECTTCCCS-SC--C---------SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTT
T ss_pred             CCCeEEecCCCCcc-cc--C---------CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHh
Confidence            46789999999887 66  5         4444  5899999999998877764 3 38899999875322  1111110


Q ss_pred             ccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEEEec-eEecccccccCccccccc
Q 039375          111 TKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGND  189 (311)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L  189 (311)
                        .+          ..+++++.+.+.++          .++.+.......+++|++|++++ .+....            
T Consensus        78 --~~----------~~l~~L~~L~L~~n----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------  123 (251)
T 3m19_A           78 --VF----------DDLTELGTLGLANN----------QLASLPLGVFDHLTQLDKLYLGGNQLKSLP------------  123 (251)
T ss_dssp             --TT----------TTCTTCCEEECTTS----------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------
T ss_pred             --Hh----------ccCCcCCEEECCCC----------cccccChhHhcccCCCCEEEcCCCcCCCcC------------
Confidence              01          33444544444332          12211111114566777777765 111110            


Q ss_pred             EEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccc
Q 039375          190 KILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDL  269 (311)
Q Consensus       190 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~  269 (311)
                          +.....+++|+.|++++| +++. .++..+..+++|++|++++|.. ..+..       .....+++|+.|.+.++
T Consensus       124 ----~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~-------~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          124 ----SGVFDRLTKLKELRLNTN-QLQS-IPAGAFDKLTNLQTLSLSTNQL-QSVPH-------GAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             ----TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCC-SCCCT-------TTTTTCTTCCEEECCSC
T ss_pred             ----hhHhccCCcccEEECcCC-cCCc-cCHHHcCcCcCCCEEECCCCcC-CccCH-------HHHhCCCCCCEEEeeCC
Confidence                111345678888888888 7776 4555677788888888887643 33321       11245677777777765


Q ss_pred             c
Q 039375          270 D  270 (311)
Q Consensus       270 ~  270 (311)
                      +
T Consensus       190 ~  190 (251)
T 3m19_A          190 Q  190 (251)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.28  E-value=8.3e-12  Score=101.46  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=32.7

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ++++|++|++++ +.++.+| ++ ..+++|++|++++|.+. .+            ..+..+++|++|++++|.+.
T Consensus        42 ~l~~L~~L~l~~-n~i~~l~-~l-~~l~~L~~L~l~~n~~~-~~------------~~l~~l~~L~~L~l~~n~l~  101 (197)
T 4ezg_A           42 QMNSLTYITLAN-INVTDLT-GI-EYAHNIKDLTINNIHAT-NY------------NPISGLSNLERLRIMGKDVT  101 (197)
T ss_dssp             HHHTCCEEEEES-SCCSCCT-TG-GGCTTCSEEEEESCCCS-CC------------GGGTTCTTCCEEEEECTTCB
T ss_pred             hcCCccEEeccC-CCccChH-HH-hcCCCCCEEEccCCCCC-cc------------hhhhcCCCCCEEEeECCccC
Confidence            345566666666 4555555 33 56666666666665432 22            44555566666666555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.27  E-value=7.1e-12  Score=108.29  Aligned_cols=169  Identities=15%  Similarity=0.161  Sum_probs=112.3

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      +..+++|++|++++ +.++.++. + +.+++|++|++++|.+. .+  +         . +..+++|+.|+++.|.+..+
T Consensus        42 ~~~l~~L~~L~l~~-~~i~~~~~-~-~~l~~L~~L~L~~n~l~-~~--~---------~-l~~l~~L~~L~l~~n~l~~~  105 (291)
T 1h6t_A           42 QNELNSIDQIIANN-SDIKSVQG-I-QYLPNVTKLFLNGNKLT-DI--K---------P-LANLKNLGWLFLDENKVKDL  105 (291)
T ss_dssp             HHHHHTCCEEECTT-SCCCCCTT-G-GGCTTCCEEECCSSCCC-CC--G---------G-GTTCTTCCEEECCSSCCCCG
T ss_pred             hhhcCcccEEEccC-CCcccChh-H-hcCCCCCEEEccCCccC-CC--c---------c-cccCCCCCEEECCCCcCCCC
Confidence            34578899999999 67888875 4 89999999999999887 55  3         3 88899999999999988888


Q ss_pred             ccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccc
Q 039375           84 QEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITL  163 (311)
Q Consensus        84 p~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~  163 (311)
                      |....+++|+.++++.+.   +..++   .+          ..+++++.+.+..+          .++.+  .....+++
T Consensus       106 ~~l~~l~~L~~L~L~~n~---i~~~~---~l----------~~l~~L~~L~l~~n----------~l~~~--~~l~~l~~  157 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNG---ISDIN---GL----------VHLPQLESLYLGNN----------KITDI--TVLSRLTK  157 (291)
T ss_dssp             GGGTTCTTCCEEECTTSC---CCCCG---GG----------GGCTTCCEEECCSS----------CCCCC--GGGGGCTT
T ss_pred             hhhccCCCCCEEECCCCc---CCCCh---hh----------cCCCCCCEEEccCC----------cCCcc--hhhccCCC
Confidence            774458899988875322   11111   12          33444444444332          12111  11156777


Q ss_pred             cceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          164 TVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       164 L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      |+.|++++ .+...                  .....+++|+.|++++| +++++   ..+..+++|+.|++++|+
T Consensus       158 L~~L~L~~N~l~~~------------------~~l~~l~~L~~L~L~~N-~i~~l---~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          158 LDTLSLEDNQISDI------------------VPLAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CSEEECCSSCCCCC------------------GGGTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEEEEEEE
T ss_pred             CCEEEccCCccccc------------------hhhcCCCccCEEECCCC-cCCCC---hhhccCCCCCEEECcCCc
Confidence            88887765 11111                  01345678888888888 77763   236778888888888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.25  E-value=1.8e-11  Score=108.45  Aligned_cols=201  Identities=14%  Similarity=0.052  Sum_probs=116.8

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceE-EeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEEL-CMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L-~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      .|++|++|++|+|++|...+.+|++.+..+++|+++ .+..|.+. .+. |         ..++.+++|++|++++|.+.
T Consensus        49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~-~---------~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YIN-P---------EAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EEC-T---------TSBCCCTTCCEEEEEEECCS
T ss_pred             HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccC-c---------hhhhhccccccccccccccc
Confidence            578999999999999544567887766889988764 55667776 553 4         67889999999999999998


Q ss_pred             ccccccc--cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccc
Q 039375           82 ILQEGFL--ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQS  159 (311)
Q Consensus        82 ~lp~~~~--l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~  159 (311)
                      .+|....  ..++..+.+.  ....+..+|... +         .+....+         +.|.+.. .+++.+.... .
T Consensus       118 ~~~~~~~~~~~~l~~l~l~--~~~~i~~l~~~~-f---------~~~~~~l---------~~L~L~~-N~i~~i~~~~-f  174 (350)
T 4ay9_X          118 HLPDVHKIHSLQKVLLDIQ--DNINIHTIERNS-F---------VGLSFES---------VILWLNK-NGIQEIHNSA-F  174 (350)
T ss_dssp             SCCCCTTCCBSSCEEEEEE--SCTTCCEECTTS-S---------TTSBSSC---------EEEECCS-SCCCEECTTS-S
T ss_pred             cCCchhhcccchhhhhhhc--cccccccccccc-h---------hhcchhh---------hhhcccc-ccccCCChhh-c
Confidence            8887654  4455555543  221222222100 0         0111122         3333332 1233332111 2


Q ss_pred             cccccceEEEec--eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375          160 RITLTVSLFIRR--GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC  237 (311)
Q Consensus       160 ~~~~L~~L~l~~--~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c  237 (311)
                      ...+++.|.+.+  .+..++                +..+..+++|+.|+++++ +++.+ +.   ..+.+|+.|.+.++
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~----------------~~~f~~l~~L~~LdLs~N-~l~~l-p~---~~~~~L~~L~~l~~  233 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELP----------------NDVFHGASGPVILDISRT-RIHSL-PS---YGLENLKKLRARST  233 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCC----------------TTTTTTEECCSEEECTTS-CCCCC-CS---SSCTTCCEEECTTC
T ss_pred             cccchhHHhhccCCcccCCC----------------HHHhccCcccchhhcCCC-CcCcc-Ch---hhhccchHhhhccC
Confidence            233455555543  111111                111345678888888888 77763 32   33556777777777


Q ss_pred             cCceEEeccCCcccccccccccccceeecc
Q 039375          238 RAMTEVVINDKEGVDIEEIVFSKLKALILC  267 (311)
Q Consensus       238 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~  267 (311)
                      ..++.++.         ...|++|+.+.+.
T Consensus       234 ~~l~~lP~---------l~~l~~L~~l~l~  254 (350)
T 4ay9_X          234 YNLKKLPT---------LEKLVALMEASLT  254 (350)
T ss_dssp             TTCCCCCC---------TTTCCSCCEEECS
T ss_pred             CCcCcCCC---------chhCcChhhCcCC
Confidence            66666532         1346777777664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.22  E-value=2.4e-12  Score=112.22  Aligned_cols=221  Identities=15%  Similarity=0.084  Sum_probs=124.3

Q ss_pred             CccEEecCCCCCCcc--cCh--hHHHhccccceEEeccccceeeeecccccccccccccc--CCCCCccEEEEeecCccc
Q 039375            9 KLRLLDLRDCFHLKV--IAP--NVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL--MLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~--lp~--~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l--~~L~~L~~L~l~~~~~~~   82 (311)
                      .++.|.+.++ .+..  +..  .. ..+.+|++|++++|.+....  |         ..+  +.+++|++|++++|.+..
T Consensus        65 ~l~~l~l~~~-~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~--~---------~~~~~~~~~~L~~L~Ls~n~i~~  131 (310)
T 4glp_A           65 RVRRLTVGAA-QVPAQLLVGALRV-LAYSRLKELTLEDLKITGTM--P---------PLPLEATGLALSSLRLRNVSWAT  131 (310)
T ss_dssp             CCCEEEECSC-CCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCC--C---------CCSSSCCCBCCSSCEEESCCCSS
T ss_pred             ceeEEEEeCC-cCCHHHHHHHHHh-cccCceeEEEeeCCEeccch--h---------hhhhhccCCCCCEEEeecccccc
Confidence            4677788774 3331  111  11 34567999999998877555  4         555  788889999998888654


Q ss_pred             ccc-----cc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcce--ec
Q 039375           83 LQE-----GF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINN--VE  154 (311)
Q Consensus        83 lp~-----~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~--~~  154 (311)
                      ...     .+ .+++|+.++++.+.  +....|.  .+          +.+++++.+.+..         ..-...  +.
T Consensus       132 ~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~--~~----------~~l~~L~~L~Ls~---------N~l~~~~~~~  188 (310)
T 4glp_A          132 GRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCE--QV----------RAFPALTSLDLSD---------NPGLGERGLM  188 (310)
T ss_dssp             TTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTT--SC----------CCCTTCCEEECCS---------CTTCHHHHHH
T ss_pred             hhhhhHHHHhhhccCCCEEEeeCCC--cchhhHH--Hh----------ccCCCCCEEECCC---------CCCccchhhh
Confidence            211     11 37788888887433  1111110  11          3344444444332         221110  00


Q ss_pred             cccc-ccccccceEEEec-eEecccccccCcccccccEEeCCCC-cccccCccEEEEecCCCceeecCccccccC---CC
Q 039375          155 YISQ-SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSS-SVSFRNLTKLVAVGCKELIHLVTSSTAKTL---VR  228 (311)
Q Consensus       155 ~~~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l---~~  228 (311)
                      .... ..+++|++|++++ .+...+..              +.+ ...+++|+.|++++| ++++. .+..+..+   ++
T Consensus       189 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~--------------~~~l~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~~~  252 (310)
T 4glp_A          189 AALCPHKFPAIQNLALRNTGMETPTGV--------------CAALAAAGVQPHSLDLSHN-SLRAT-VNPSAPRCMWSSA  252 (310)
T ss_dssp             TTSCTTSSCCCCSCBCCSSCCCCHHHH--------------HHHHHHHTCCCSSEECTTS-CCCCC-CCSCCSSCCCCTT
T ss_pred             HHHhhhcCCCCCEEECCCCCCCchHHH--------------HHHHHhcCCCCCEEECCCC-CCCcc-chhhHHhccCcCc
Confidence            0000 3566777777765 11100000              000 234678999999999 77773 23333443   79


Q ss_pred             CCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCC
Q 039375          229 LVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       229 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      |++|++++|. ++.+..          ..+++|++|+++++. ++.+.   ....+++|++|++.+.+
T Consensus       253 L~~L~Ls~N~-l~~lp~----------~~~~~L~~L~Ls~N~-l~~~~---~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          253 LNSLNLSFAG-LEQVPK----------GLPAKLRVLDLSSNR-LNRAP---QPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCEECCSSC-CCSCCS----------CCCSCCSCEECCSCC-CCSCC---CTTSCCCCSCEECSSTT
T ss_pred             CCEEECCCCC-CCchhh----------hhcCCCCEEECCCCc-CCCCc---hhhhCCCccEEECcCCC
Confidence            9999998765 334421          234789999998763 55542   13567888888887753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.22  E-value=3.9e-11  Score=99.27  Aligned_cols=148  Identities=16%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             cEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc-ccccc-
Q 039375           11 RLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL-QEGFL-   88 (311)
Q Consensus        11 ~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l-p~~~~-   88 (311)
                      +.++.++ +.++.+|..+ .  .+|++|++++|.+. .+. +         ..+..+++|+.|++++|.+..+ |..+. 
T Consensus        14 ~~v~c~~-~~l~~iP~~l-~--~~l~~L~l~~n~i~-~i~-~---------~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~   78 (220)
T 2v9t_B           14 NIVDCRG-KGLTEIPTNL-P--ETITEIRLEQNTIK-VIP-P---------GAFSPYKKLRRIDLSNNQISELAPDAFQG   78 (220)
T ss_dssp             TEEECTT-SCCSSCCSSC-C--TTCCEEECCSSCCC-EEC-T---------TSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CEEEcCC-CCcCcCCCcc-C--cCCCEEECCCCcCC-CcC-H---------hHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence            5677777 6777777755 3  57888888888776 442 3         4667778888888887776665 33342 


Q ss_pred             cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEE
Q 039375           89 ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLF  168 (311)
Q Consensus        89 l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  168 (311)
                      +++|+.++++.+.   +..+|                                             ......+++|+.|+
T Consensus        79 l~~L~~L~Ls~N~---l~~l~---------------------------------------------~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           79 LRSLNSLVLYGNK---ITELP---------------------------------------------KSLFEGLFSLQLLL  110 (220)
T ss_dssp             CSSCCEEECCSSC---CCCCC---------------------------------------------TTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCc---CCccC---------------------------------------------HhHccCCCCCCEEE
Confidence            6666666654211   00000                                             00003455666666


Q ss_pred             Eec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          169 IRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       169 l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      +++ .+...                .+..+..+++|+.|++++| +++. .++..+..+++|+.|++++|+.
T Consensus       111 L~~N~l~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCL----------------RVDAFQDLHNLNLLSLYDN-KLQT-IAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCC----------------CTTTTTTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEe----------------CHHHcCCCCCCCEEECCCC-cCCE-ECHHHHhCCCCCCEEEeCCCCc
Confidence            654 11111                0122455778888888888 7777 4556677888888998887763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.21  E-value=1.7e-11  Score=116.26  Aligned_cols=170  Identities=14%  Similarity=0.149  Sum_probs=110.3

Q ss_pred             CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      ..|.+|++|++++ +.+..+|. + +.+++|++|++++|.+. .+            ..+..+++|+.|+++.|.+..+|
T Consensus        40 ~~L~~L~~L~l~~-n~i~~l~~-l-~~l~~L~~L~Ls~N~l~-~~------------~~l~~l~~L~~L~Ls~N~l~~l~  103 (605)
T 1m9s_A           40 NELNSIDQIIANN-SDIKSVQG-I-QYLPNVTKLFLNGNKLT-DI------------KPLTNLKNLGWLFLDENKIKDLS  103 (605)
T ss_dssp             HHHTTCCCCBCTT-CCCCCCTT-G-GGCTTCCEEECTTSCCC-CC------------GGGGGCTTCCEEECCSSCCCCCT
T ss_pred             hcCCCCCEEECcC-CCCCCChH-H-ccCCCCCEEEeeCCCCC-CC------------hhhccCCCCCEEECcCCCCCCCh
Confidence            4578899999998 67888874 4 89999999999999886 44            23778899999999988888877


Q ss_pred             cccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccccc
Q 039375           85 EGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLT  164 (311)
Q Consensus        85 ~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L  164 (311)
                      ....+++|+.|+++.+.   +..++   .+          ..+++|+.|.+..+          .++.+  .....+++|
T Consensus       104 ~l~~l~~L~~L~Ls~N~---l~~l~---~l----------~~l~~L~~L~Ls~N----------~l~~l--~~l~~l~~L  155 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNG---ISDIN---GL----------VHLPQLESLYLGNN----------KITDI--TVLSRLTKL  155 (605)
T ss_dssp             TSTTCTTCCEEECTTSC---CCCCG---GG----------GGCTTCSEEECCSS----------CCCCC--GGGGSCTTC
T ss_pred             hhccCCCCCEEEecCCC---CCCCc---cc----------cCCCccCEEECCCC----------ccCCc--hhhcccCCC
Confidence            54458888888775322   11111   12          34444444444332          11111  011566777


Q ss_pred             ceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          165 VSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      +.|++++.  .+.               +......+++|+.|++++| +++++   ..+..+++|+.|++++|..
T Consensus       156 ~~L~Ls~N--~l~---------------~~~~l~~l~~L~~L~Ls~N-~i~~l---~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          156 DTLSLEDN--QIS---------------DIVPLAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             SEEECCSS--CCC---------------CCGGGTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEECCSEEE
T ss_pred             CEEECcCC--cCC---------------CchhhccCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEccCCcC
Confidence            77777651  000               0011445678888888888 77763   3467788888888887754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.21  E-value=1.9e-11  Score=106.64  Aligned_cols=202  Identities=15%  Similarity=0.080  Sum_probs=127.3

Q ss_pred             CCCCccEEecCCCCCCc-ccChhHH-HhccccceEEeccccceeeeeccccccccccccccCCC-----CCccEEEEeec
Q 039375            6 QVTKLRLLDLRDCFHLK-VIAPNVI-SSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLL-----PWLTTLEIDVK   78 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~-~lp~~i~-~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L-----~~L~~L~l~~~   78 (311)
                      ++++|++|++++ +.++ .+|..++ +.+++|++|++++|.+. .+  |         ..++.+     ++|++|++++|
T Consensus        93 ~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~--~---------~~~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           93 GISGLQELTLEN-LEVTGTAPPPLLEATGPDLNILNLRNVSWA-TR--D---------AWLAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             TTSCCCEEEEEE-EBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SS--S---------SHHHHHHTTCCTTCCEEEEESC
T ss_pred             CcCCccEEEccC-CcccchhHHHHHHhcCCCccEEEccCCCCc-ch--h---------HHHHHHHHhhcCCCcEEEeeCC
Confidence            689999999999 5665 6777643 78999999999999987 44  4         444444     89999999999


Q ss_pred             Cccccc-cccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceec-c
Q 039375           79 NDSILQ-EGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVE-Y  155 (311)
Q Consensus        79 ~~~~lp-~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~-~  155 (311)
                      .+..++ ..+. +++|+.++++.+.  +.+..+.....        .-+.+++++.+.+         +++ .++.+. .
T Consensus       160 ~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~--------~~~~l~~L~~L~L---------~~N-~l~~~~~~  219 (312)
T 1wwl_A          160 HSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLISAL--------CPLKFPTLQVLAL---------RNA-GMETPSGV  219 (312)
T ss_dssp             SCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHHHS--------CTTSCTTCCEEEC---------TTS-CCCCHHHH
T ss_pred             CCccchHHHhccCCCCCEEECCCCC--cCcchHHHHHH--------HhccCCCCCEEEC---------CCC-cCcchHHH
Confidence            988877 4553 8999999886332  22110000000        0033444444444         332 122110 0


Q ss_pred             c-cc-ccccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEE
Q 039375          156 I-SQ-SRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTV  232 (311)
Q Consensus       156 ~-~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L  232 (311)
                      . .. ..+++|+.|++++ .+....    +           ......+++|+.|++++| +++. .+ ..+.  ++|++|
T Consensus       220 ~~~~~~~l~~L~~L~Ls~N~l~~~~----~-----------~~~~~~l~~L~~L~Ls~N-~l~~-ip-~~~~--~~L~~L  279 (312)
T 1wwl_A          220 CSALAAARVQLQGLDLSHNSLRDAA----G-----------APSCDWPSQLNSLNLSFT-GLKQ-VP-KGLP--AKLSVL  279 (312)
T ss_dssp             HHHHHHTTCCCSEEECTTSCCCSSC----C-----------CSCCCCCTTCCEEECTTS-CCSS-CC-SSCC--SEEEEE
T ss_pred             HHHHHhcCCCCCEEECCCCcCCccc----c-----------hhhhhhcCCCCEEECCCC-ccCh-hh-hhcc--CCceEE
Confidence            0 00 3567899999876 111110    0           011334689999999999 7886 33 3333  899999


Q ss_pred             eeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375          233 QVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       233 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                      ++++|. +..+..         ...+++|++|.+.+.+
T Consensus       280 ~Ls~N~-l~~~p~---------~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          280 DLSYNR-LDRNPS---------PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             ECCSSC-CCSCCC---------TTTSCEEEEEECTTCT
T ss_pred             ECCCCC-CCCChh---------HhhCCCCCEEeccCCC
Confidence            999875 333311         2568899999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.19  E-value=2.2e-10  Score=108.95  Aligned_cols=89  Identities=18%  Similarity=0.201  Sum_probs=64.9

Q ss_pred             CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375          194 PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT  273 (311)
Q Consensus       194 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~  273 (311)
                      |.....+++|+.|++++| +++. .++..+..+++|++|++++|. +..+..       .....+++|++|+++++. +.
T Consensus       487 ~~~~~~l~~L~~L~Ls~N-~L~~-l~~~~f~~l~~L~~L~Ls~N~-l~~l~~-------~~~~~l~~L~~L~Ls~N~-l~  555 (635)
T 4g8a_A          487 PDIFTELRNLTFLDLSQC-QLEQ-LSPTAFNSLSSLQVLNMSHNN-FFSLDT-------FPYKCLNSLQVLDYSLNH-IM  555 (635)
T ss_dssp             CSCCTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECTTSC-CCBCCC-------GGGTTCTTCCEEECTTSC-CC
T ss_pred             chhhhhccccCEEECCCC-ccCC-cChHHHcCCCCCCEEECCCCc-CCCCCh-------hHHhCCCCCCEEECCCCc-CC
Confidence            344667889999999999 8998 566778999999999999875 444422       123567889999999864 66


Q ss_pred             eeccCCceecC-CCccEEEEec
Q 039375          274 SFCSANYTFKF-PSLEYLEVIG  294 (311)
Q Consensus       274 ~~~~~~~~~~~-~~L~~L~i~~  294 (311)
                      .+.+. ....+ ++|++|++++
T Consensus       556 ~~~~~-~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          556 TSKKQ-ELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             BCCSS-CTTCCCTTCCEEECTT
T ss_pred             CCCHH-HHHhhhCcCCEEEeeC
Confidence            65432 22334 6899999976

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.18  E-value=5.1e-12  Score=119.61  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=43.0

Q ss_pred             ccCccEEEEecCCCceeecCccccc-cCCCCCEEeecc---CcCceEEeccCCcccccccccccccceeecccccc-cce
Q 039375          200 FRNLTKLVAVGCKELIHLVTSSTAK-TLVRLVTVQVYG---CRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDS-LTS  274 (311)
Q Consensus       200 l~~L~~L~l~~~~~l~~l~~~~~l~-~l~~L~~L~l~~---c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~-l~~  274 (311)
                      +++|+.|+++.+ ++++ .....+. .+++|+.|++++   |+.++......  ..+.-...+++|++|.+.+|.. +..
T Consensus       377 ~~~L~~L~l~~~-~l~~-~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          377 CQELEYMAVYVS-DITN-ESLESIGTYLKNLCDFRLVLLDREERITDLPLDN--GVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             CTTCSEEEEEES-CCCH-HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH--HHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             CccCeEEEeecC-CccH-HHHHHHHhhCCCCcEEEEeecCCCccccCchHHH--HHHHHHHhCCCCCEEEEecCCCCccH
Confidence            556666666444 5554 2222232 366666666653   33333211000  0000113466777777765543 221


Q ss_pred             eccCCceecCCCccEEEEecCC
Q 039375          275 FCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       275 ~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .........+++|++|++++|.
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVG  474 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCC
T ss_pred             HHHHHHHHhCccceEeeccCCC
Confidence            1111112246778888887764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.18  E-value=4.4e-11  Score=101.76  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=28.5

Q ss_pred             cccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          197 SVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       197 ~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      ...+++|+.|++++| +++++   ..+..+++|+.|++++|..
T Consensus       146 l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             GGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEEE
T ss_pred             HccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCcc
Confidence            445678888888888 77763   4567788888888887653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.13  E-value=4.2e-12  Score=114.05  Aligned_cols=260  Identities=15%  Similarity=0.060  Sum_probs=138.4

Q ss_pred             ccCCCCCccEEecCCCCCCccc-ChhH---HHhccccceEEeccccceeeeec--cccccccccccccCCCCCccEEEEe
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVI-APNV---ISSLIRLEELCMGNCSVEWEVER--ANTERSNASLDELMLLPWLTTLEID   76 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~l-p~~i---~~~L~~Lq~L~l~~~~~~~~~~~--p~~~~~~~~l~~l~~L~~L~~L~l~   76 (311)
                      .+..+++|++|+|++ +.++.. +..+   +.++++|++|++++|.+. .+.+  |  ..-......+..+++|++|+++
T Consensus        27 ~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~-~l~~~~~--~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIP--EALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             HHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGGGSH--HHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHhcCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccC-ccccchh--HHHHHHHHHHhhCCcccEEECC
Confidence            345678899999999 466643 2221   257889999999987543 2211  2  0000111334788999999999


Q ss_pred             ecCccc-----cccccc-cccCcEEEEEecCcccc--cccccccccccccccccccccccccccccccCceeeEEccccC
Q 039375           77 VKNDSI-----LQEGFL-ARKLERFKISIGNESFM--ASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQ  148 (311)
Q Consensus        77 ~~~~~~-----lp~~~~-l~~L~~l~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~  148 (311)
                      .|.+..     +|..+. +++|+.++++.+...-.  ..++.  .+ .......+.+..++         ++.|.+..+.
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--~l-~~l~~~~~~~~~~~---------L~~L~L~~n~  170 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--AL-QELAVNKKAKNAPP---------LRSIICGRNR  170 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HH-HHHHHHHHHHTCCC---------CCEEECCSSC
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--HH-HHHhhhhhcccCCC---------CcEEECCCCC
Confidence            888665     666664 78999998863321100  00000  00 00000000000023         3445554332


Q ss_pred             Ccceeccc---cc-ccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCcee---ecCcc
Q 039375          149 AINNVEYI---SQ-SRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIH---LVTSS  221 (311)
Q Consensus       149 ~~~~~~~~---~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~---l~~~~  221 (311)
                       ++....+   .. ..+++|++|++++.  .+...     ++..+   .+.....+++|+.|++++| ++++   ...+.
T Consensus       171 -l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~-----g~~~l---~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~  238 (386)
T 2ca6_A          171 -LENGSMKEWAKTFQSHRLLHTVKMVQN--GIRPE-----GIEHL---LLEGLAYCQELKVLDLQDN-TFTHLGSSALAI  238 (386)
T ss_dssp             -CTGGGHHHHHHHHHHCTTCCEEECCSS--CCCHH-----HHHHH---HHTTGGGCTTCCEEECCSS-CCHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHhCCCcCEEECcCC--CCCHh-----HHHHH---HHHHhhcCCCccEEECcCC-CCCcHHHHHHHH
Confidence             2211111   01 45678888888761  11000     00000   0112456788999999999 6742   02245


Q ss_pred             ccccCCCCCEEeeccCcCceEEeccCCccccccc--ccccccceeecccccccce-----eccCCceecCCCccEEEEec
Q 039375          222 TAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEE--IVFSKLKALILCDLDSLTS-----FCSANYTFKFPSLEYLEVIG  294 (311)
Q Consensus       222 ~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~--~~~~~L~~L~i~~~~~l~~-----~~~~~~~~~~~~L~~L~i~~  294 (311)
                      .+..+++|++|++++|........    ..+...  +.+++|++|.+++|. +..     +.. .....+++|++|++.+
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~----~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAA----AVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-VIDEKMPDLLFLELNG  312 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHH----HHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-HHHHHCTTCCEEECTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHH----HHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-HHHhcCCCceEEEccC
Confidence            677889999999998863222000    001111  237889999998874 443     321 0113578999999988


Q ss_pred             CC
Q 039375          295 CP  296 (311)
Q Consensus       295 c~  296 (311)
                      |+
T Consensus       313 N~  314 (386)
T 2ca6_A          313 NR  314 (386)
T ss_dssp             SB
T ss_pred             Cc
Confidence            74

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.13  E-value=1.8e-10  Score=109.16  Aligned_cols=151  Identities=17%  Similarity=0.198  Sum_probs=108.2

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++.|++|++|+|++ +.+..+|+ + +++++|++|++++|.+. .+            ..+..+++|+.|+++.|.+..
T Consensus        60 ~l~~l~~L~~L~Ls~-N~l~~~~~-l-~~l~~L~~L~Ls~N~l~-~l------------~~l~~l~~L~~L~Ls~N~l~~  123 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNG-NKLTDIKP-L-TNLKNLGWLFLDENKIK-DL------------SSLKDLKKLKSLSLEHNGISD  123 (605)
T ss_dssp             TGGGCTTCCEEECTT-SCCCCCGG-G-GGCTTCCEEECCSSCCC-CC------------TTSTTCTTCCEEECTTSCCCC
T ss_pred             HHccCCCCCEEEeeC-CCCCCChh-h-ccCCCCCEEECcCCCCC-CC------------hhhccCCCCCEEEecCCCCCC
Confidence            578899999999999 68888887 4 99999999999999886 44            678899999999999999888


Q ss_pred             cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375           83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT  162 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~  162 (311)
                      ++....+++|+.|+++.+..   ..++   .+          ..+++|+.|.+..         + .+..+..  ...++
T Consensus       124 l~~l~~l~~L~~L~Ls~N~l---~~l~---~l----------~~l~~L~~L~Ls~---------N-~l~~~~~--l~~l~  175 (605)
T 1m9s_A          124 INGLVHLPQLESLYLGNNKI---TDIT---VL----------SRLTKLDTLSLED---------N-QISDIVP--LAGLT  175 (605)
T ss_dssp             CGGGGGCTTCSEEECCSSCC---CCCG---GG----------GSCTTCSEEECCS---------S-CCCCCGG--GTTCT
T ss_pred             CccccCCCccCEEECCCCcc---CCch---hh----------cccCCCCEEECcC---------C-cCCCchh--hccCC
Confidence            87655689999999864321   1111   12          4445555554433         2 1222211  16788


Q ss_pred             ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCcee
Q 039375          163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIH  216 (311)
Q Consensus       163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~  216 (311)
                      +|+.|++++ .+...                  ..+..+++|+.|++++| .+..
T Consensus       176 ~L~~L~Ls~N~i~~l------------------~~l~~l~~L~~L~L~~N-~l~~  211 (605)
T 1m9s_A          176 KLQNLYLSKNHISDL------------------RALAGLKNLDVLELFSQ-ECLN  211 (605)
T ss_dssp             TCCEEECCSSCCCBC------------------GGGTTCTTCSEEECCSE-EEEC
T ss_pred             CCCEEECcCCCCCCC------------------hHHccCCCCCEEEccCC-cCcC
Confidence            999999876 11111                  12456889999999999 6665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.12  E-value=3.7e-10  Score=91.61  Aligned_cols=83  Identities=17%  Similarity=0.132  Sum_probs=48.7

Q ss_pred             ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceecc
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCS  277 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~  277 (311)
                      ..+++|+.|++++| ++++ ..+..+..+++|++|++++|..++++.         ....+++|++|.+.++. ++.+. 
T Consensus       109 ~~l~~L~~L~Ls~n-~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~---------~l~~l~~L~~L~l~~n~-i~~~~-  175 (197)
T 4ezg_A          109 SGLTSLTLLDISHS-AHDD-SILTKINTLPKVNSIDLSYNGAITDIM---------PLKTLPELKSLNIQFDG-VHDYR-  175 (197)
T ss_dssp             TTCTTCCEEECCSS-BCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG---------GGGGCSSCCEEECTTBC-CCCCT-
T ss_pred             cCCCCCCEEEecCC-ccCc-HhHHHHhhCCCCCEEEccCCCCccccH---------hhcCCCCCCEEECCCCC-CcChH-
Confidence            34566677777766 5554 334556667777777777665444441         12456667777776653 44432 


Q ss_pred             CCceecCCCccEEEEecC
Q 039375          278 ANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       278 ~~~~~~~~~L~~L~i~~c  295 (311)
                        ....+++|++|++.+.
T Consensus       176 --~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          176 --GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             --TGGGCSSCCEEEECBC
T ss_pred             --HhccCCCCCEEEeeCc
Confidence              2345677777777664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.11  E-value=2.8e-10  Score=93.06  Aligned_cols=39  Identities=15%  Similarity=0.077  Sum_probs=29.2

Q ss_pred             ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      ..+++|+.|+++++ +++. .+...+..+++|++|++++|.
T Consensus       121 ~~l~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          121 DKLTQLKDLRLYQN-QLKS-VPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TTCTTCCEEECCSS-CCSC-CCTTTTTTCTTCCEEECCSCC
T ss_pred             ccCCcCCEEECCCC-ccce-eCHHHhccCCCccEEEecCCC
Confidence            45678888888888 7776 455556778888888888775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.10  E-value=3.2e-12  Score=120.97  Aligned_cols=38  Identities=13%  Similarity=0.136  Sum_probs=22.4

Q ss_pred             CCCCccEEecCCCC-CCc-ccChhHHHhccccceEEeccc
Q 039375            6 QVTKLRLLDLRDCF-HLK-VIAPNVISSLIRLEELCMGNC   43 (311)
Q Consensus         6 ~L~~L~~L~L~~c~-~l~-~lp~~i~~~L~~Lq~L~l~~~   43 (311)
                      .+++|++|++++|. .+. .....++.++++|++|++++|
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            56678888888754 122 111222345677888877776

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.10  E-value=1.6e-10  Score=99.68  Aligned_cols=151  Identities=18%  Similarity=0.198  Sum_probs=107.1

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++.+++|++|++++ +.++.+++ + +++++|++|++++|.+. .+            ..++.+++|++|+++.|.+..
T Consensus        63 ~~~~l~~L~~L~L~~-n~l~~~~~-l-~~l~~L~~L~l~~n~l~-~~------------~~l~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNG-NKLTDIKP-L-ANLKNLGWLFLDENKVK-DL------------SSLKDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             TGGGCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CG------------GGGTTCTTCCEEECTTSCCCC
T ss_pred             hHhcCCCCCEEEccC-CccCCCcc-c-ccCCCCCEEECCCCcCC-CC------------hhhccCCCCCEEECCCCcCCC
Confidence            467899999999999 78888887 5 99999999999999886 44            568899999999999999888


Q ss_pred             cccccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccc
Q 039375           83 LQEGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRIT  162 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~  162 (311)
                      ++....+++|+.++++.+..   ..++   .+          ..+++++.+.+.+         + .++....  ...++
T Consensus       127 ~~~l~~l~~L~~L~l~~n~l---~~~~---~l----------~~l~~L~~L~L~~---------N-~l~~~~~--l~~l~  178 (291)
T 1h6t_A          127 INGLVHLPQLESLYLGNNKI---TDIT---VL----------SRLTKLDTLSLED---------N-QISDIVP--LAGLT  178 (291)
T ss_dssp             CGGGGGCTTCCEEECCSSCC---CCCG---GG----------GGCTTCSEEECCS---------S-CCCCCGG--GTTCT
T ss_pred             ChhhcCCCCCCEEEccCCcC---Ccch---hh----------ccCCCCCEEEccC---------C-ccccchh--hcCCC
Confidence            86555689999998863321   1111   12          4445555554433         2 1222211  16778


Q ss_pred             ccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCcee
Q 039375          163 LTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIH  216 (311)
Q Consensus       163 ~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~  216 (311)
                      +|+.|++++ .+.+.                  .....+++|+.|++++| .++.
T Consensus       179 ~L~~L~L~~N~i~~l------------------~~l~~l~~L~~L~l~~n-~i~~  214 (291)
T 1h6t_A          179 KLQNLYLSKNHISDL------------------RALAGLKNLDVLELFSQ-ECLN  214 (291)
T ss_dssp             TCCEEECCSSCCCBC------------------GGGTTCTTCSEEEEEEE-EEEC
T ss_pred             ccCEEECCCCcCCCC------------------hhhccCCCCCEEECcCC-cccC
Confidence            899999876 11111                  11456789999999999 6665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.10  E-value=3.4e-10  Score=94.12  Aligned_cols=149  Identities=15%  Similarity=0.136  Sum_probs=102.8

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF-   87 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~-   87 (311)
                      ..+.++.++ +.++.+|.++ .  .+|++|++++|.+....  |         ..+..+++|+.|++++|.+..+|... 
T Consensus        20 s~~~v~c~~-~~l~~ip~~~-~--~~L~~L~Ls~n~i~~~~--~---------~~~~~l~~L~~L~L~~N~l~~i~~~~~   84 (229)
T 3e6j_A           20 SGTTVDCRS-KRHASVPAGI-P--TNAQILYLHDNQITKLE--P---------GVFDSLINLKELYLGSNQLGALPVGVF   84 (229)
T ss_dssp             ETTEEECTT-SCCSSCCSCC-C--TTCSEEECCSSCCCCCC--T---------TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             eCCEeEccC-CCcCccCCCC-C--CCCCEEEcCCCccCccC--H---------HHhhCccCCcEEECCCCCCCCcChhhc
Confidence            456788888 7888898865 3  78999999999887443  4         67788899999999998888887654 


Q ss_pred             -ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           88 -LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        88 -~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                       .+++|+.++++.+.  + ..+|                                             ......+++|+.
T Consensus        85 ~~l~~L~~L~Ls~N~--l-~~l~---------------------------------------------~~~~~~l~~L~~  116 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQ--L-TVLP---------------------------------------------SAVFDRLVHLKE  116 (229)
T ss_dssp             TTCTTCCEEECCSSC--C-CCCC---------------------------------------------TTTTTTCTTCCE
T ss_pred             ccCCCcCEEECCCCc--C-CccC---------------------------------------------hhHhCcchhhCe
Confidence             37777777765221  0 0000                                             000044567777


Q ss_pred             EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      |++++ .+..+                 |.....+++|+.|++++| +++. .+...+..+++|+.|++++|+.
T Consensus       117 L~Ls~N~l~~l-----------------p~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          117 LFMCCNKLTEL-----------------PRGIERLTHLTHLALDQN-QLKS-IPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             EECCSSCCCSC-----------------CTTGGGCTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECTTSCB
T ss_pred             EeccCCccccc-----------------CcccccCCCCCEEECCCC-cCCc-cCHHHHhCCCCCCEEEeeCCCc
Confidence            77765 11111                 222456789999999999 8887 4556778899999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.07  E-value=1.8e-10  Score=102.56  Aligned_cols=40  Identities=10%  Similarity=-0.027  Sum_probs=28.2

Q ss_pred             ccccCccEEEEecCCCceeecCccccccCCC--CCEEeeccCcC
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVR--LVTVQVYGCRA  239 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~--L~~L~l~~c~~  239 (311)
                      ..+++|+.|+++++ +++. .+...+..++.  ++.|++.+|+.
T Consensus       160 ~~l~~L~~L~L~~N-~l~~-l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          160 NKLPKLMLLDLSSN-KLKK-LPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             --CTTCCEEECCSS-CCCC-CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             ccCCcCCEEECCCC-CCCc-cCHHHhhhccHhhcceEEecCCCc
Confidence            34778888999888 7887 45556666776  47788887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.07  E-value=1.1e-10  Score=101.70  Aligned_cols=208  Identities=14%  Similarity=0.060  Sum_probs=128.0

Q ss_pred             CCCccEEecCCCCCCc-ccChhHH-HhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            7 VTKLRLLDLRDCFHLK-VIAPNVI-SSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~-~lp~~i~-~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      +.+|++|++++| .+. ..|..++ +++++|++|++++|.+....  +     ......+..+++|++|++++|.+..++
T Consensus        90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~  161 (310)
T 4glp_A           90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGR--S-----WLAELQQWLKPGLKVLSIAQAHSPAFS  161 (310)
T ss_dssp             HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT--S-----SHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred             cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchh--h-----hhHHHHhhhccCCCEEEeeCCCcchhh
Confidence            467999999995 555 5565543 78999999999999886322  1     000034457899999999999987777


Q ss_pred             c-cc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccc---ccc
Q 039375           85 E-GF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYI---SQS  159 (311)
Q Consensus        85 ~-~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~---~~~  159 (311)
                      . .+ .+++|+.++++.+.......++.....          +.+++++++.+..+          .++.+...   ...
T Consensus       162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----------~~l~~L~~L~Ls~N----------~l~~l~~~~~~l~~  221 (310)
T 4glp_A          162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCP----------HKFPAIQNLALRNT----------GMETPTGVCAALAA  221 (310)
T ss_dssp             TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT----------TSSCCCCSCBCCSS----------CCCCHHHHHHHHHH
T ss_pred             HHHhccCCCCCEEECCCCCCccchhhhHHHhh----------hcCCCCCEEECCCC----------CCCchHHHHHHHHh
Confidence            5 44 489999999874431110111100001          45566777666543          12211110   004


Q ss_pred             cccccceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          160 RITLTVSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       160 ~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      .+++|++|++++ .+...   .  +..+..        ...+++|+.|++++| +++. .+. .+  .++|+.|++++|.
T Consensus       222 ~l~~L~~L~Ls~N~l~~~---~--p~~~~~--------~~~~~~L~~L~Ls~N-~l~~-lp~-~~--~~~L~~L~Ls~N~  283 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRAT---V--NPSAPR--------CMWSSALNSLNLSFA-GLEQ-VPK-GL--PAKLRVLDLSSNR  283 (310)
T ss_dssp             HTCCCSSEECTTSCCCCC---C--CSCCSS--------CCCCTTCCCEECCSS-CCCS-CCS-CC--CSCCSCEECCSCC
T ss_pred             cCCCCCEEECCCCCCCcc---c--hhhHHh--------ccCcCcCCEEECCCC-CCCc-hhh-hh--cCCCCEEECCCCc
Confidence            568999999976 11111   0  000111        122479999999999 8886 332 23  3799999999876


Q ss_pred             CceEEeccCCcccccccccccccceeeccccc
Q 039375          239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                      . ..+..         ...+++|+.|.+.+.+
T Consensus       284 l-~~~~~---------~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          284 L-NRAPQ---------PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             C-CSCCC---------TTSCCCCSCEECSSTT
T ss_pred             C-CCCch---------hhhCCCccEEECcCCC
Confidence            3 33211         2468999999998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.05  E-value=7.5e-10  Score=91.49  Aligned_cols=150  Identities=17%  Similarity=0.175  Sum_probs=100.2

Q ss_pred             ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-c-
Q 039375           10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-F-   87 (311)
Q Consensus        10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-~-   87 (311)
                      -+++++++ +.++.+|..+ .  ..+++|++++|.+. .+..+         ..++.+++|+.|++++|.+..++.. + 
T Consensus        13 ~~~l~~s~-n~l~~iP~~~-~--~~~~~L~L~~N~l~-~~~~~---------~~~~~l~~L~~L~L~~N~i~~i~~~~~~   78 (220)
T 2v70_A           13 GTTVDCSN-QKLNKIPEHI-P--QYTAELRLNNNEFT-VLEAT---------GIFKKLPQLRKINFSNNKITDIEEGAFE   78 (220)
T ss_dssp             TTEEECCS-SCCSSCCSCC-C--TTCSEEECCSSCCC-EECCC---------CCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCEeEeCC-CCcccCccCC-C--CCCCEEEcCCCcCC-ccCch---------hhhccCCCCCEEECCCCcCCEECHHHhC
Confidence            46888988 7888898865 3  35789999999887 44212         3467889999999998888877763 3 


Q ss_pred             ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceE
Q 039375           88 LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSL  167 (311)
Q Consensus        88 ~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L  167 (311)
                      .+++|+.++++.+.                                                ++.+.......+++|+.|
T Consensus        79 ~l~~L~~L~Ls~N~------------------------------------------------l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           79 GASGVNEILLTSNR------------------------------------------------LENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TCTTCCEEECCSSC------------------------------------------------CCCCCGGGGTTCSSCCEE
T ss_pred             CCCCCCEEECCCCc------------------------------------------------cCccCHhHhcCCcCCCEE
Confidence            27777777664221                                                000000000445677777


Q ss_pred             EEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcC
Q 039375          168 FIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRA  239 (311)
Q Consensus       168 ~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~  239 (311)
                      ++++ .+...                .+..+..+++|+.|++++| +++. ..+..+..+++|+.|++++|+.
T Consensus       111 ~Ls~N~l~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          111 MLRSNRITCV----------------GNDSFIGLSSVRLLSLYDN-QITT-VAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECTTSCCCCB----------------CTTSSTTCTTCSEEECTTS-CCCC-BCTTTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCcCCeE----------------CHhHcCCCccCCEEECCCC-cCCE-ECHHHhcCCCCCCEEEecCcCC
Confidence            7765 11111                1222456788999999999 8887 5567788899999999998764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.03  E-value=4e-11  Score=107.60  Aligned_cols=215  Identities=13%  Similarity=0.037  Sum_probs=125.5

Q ss_pred             ccCCCCCccEEecCCC--CCCc-ccChhH------HHhccccceEEecccccee----eeeccccccccccccccCCCCC
Q 039375            3 ALGQVTKLRLLDLRDC--FHLK-VIAPNV------ISSLIRLEELCMGNCSVEW----EVERANTERSNASLDELMLLPW   69 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c--~~l~-~lp~~i------~~~L~~Lq~L~l~~~~~~~----~~~~p~~~~~~~~l~~l~~L~~   69 (311)
                      .+..+++|++|+|++|  +.+. .+|.++      +.++++|++|++++|.+..    .+  |         ..++.+++
T Consensus        55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--~---------~~l~~~~~  123 (386)
T 2ca6_A           55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL--I---------DFLSKHTP  123 (386)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH--H---------HHHHHCTT
T ss_pred             HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH--H---------HHHHhCCC
Confidence            3668999999999996  3333 445544      2678999999999998863    13  3         67788999


Q ss_pred             ccEEEEeecCcccc-----ccccc-c---------ccCcEEEEEecCcccc-ccccccc-cccccccccccccccccccc
Q 039375           70 LTTLEIDVKNDSIL-----QEGFL-A---------RKLERFKISIGNESFM-ASLPVTK-DWFRSRSHFLINHNHERLRE  132 (311)
Q Consensus        70 L~~L~l~~~~~~~l-----p~~~~-l---------~~L~~l~~~~~~~~~~-~~~p~~~-~~~~~~~~~~~~~~~~~l~~  132 (311)
                      |++|++++|.+...     +..+. +         ++|+.++++.+.  +. ..+|... .+          ...+++  
T Consensus       124 L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l----------~~~~~L--  189 (386)
T 2ca6_A          124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--LENGSMKEWAKTF----------QSHRLL--  189 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC--CTGGGHHHHHHHH----------HHCTTC--
T ss_pred             CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC--CCcHHHHHHHHHH----------HhCCCc--
Confidence            99999999886532     22221 3         799999886332  11 1111000 00          122333  


Q ss_pred             ccccCceeeEEccccCCcceec----cc-ccccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEE
Q 039375          133 LKLKPDFTDICSMKLQAINNVE----YI-SQSRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLV  207 (311)
Q Consensus       133 l~l~~~l~~L~l~~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~  207 (311)
                             +.|.+..+ .++..+    .+ ....+++|++|++++.-.........           +.....+++|+.|+
T Consensus       190 -------~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-----------~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          190 -------HTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-----------AIALKSWPNLRELG  250 (386)
T ss_dssp             -------CEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-----------HHHGGGCTTCCEEE
T ss_pred             -------CEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-----------HHHHccCCCcCEEE
Confidence                   44555444 232111    00 11567789999987611100000000           11134567899999


Q ss_pred             EecCCCceeec---Ccccc--ccCCCCCEEeeccCcCceE----EeccCCccccccc-ccccccceeeccccc
Q 039375          208 AVGCKELIHLV---TSSTA--KTLVRLVTVQVYGCRAMTE----VVINDKEGVDIEE-IVFSKLKALILCDLD  270 (311)
Q Consensus       208 l~~~~~l~~l~---~~~~l--~~l~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~-~~~~~L~~L~i~~~~  270 (311)
                      +++| ++++..   .+..+  ..+++|++|++++|.....    +.        ... ..+++|++|.+.+++
T Consensus       251 L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~--------~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          251 LNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK--------TVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH--------HHHHHHCTTCCEEECTTSB
T ss_pred             CCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH--------HHHHhcCCCceEEEccCCc
Confidence            9988 676521   12333  2378899999988764331    21        111 346888888888774

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.03  E-value=2.5e-10  Score=97.00  Aligned_cols=166  Identities=15%  Similarity=0.150  Sum_probs=113.6

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE   85 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~   85 (311)
                      ++.++..+++++ +.++.++.  +.++.+|++|++++|.+. .+            ..++.+++|+.|++++|.+..++.
T Consensus        17 ~l~~l~~l~l~~-~~i~~~~~--~~~l~~L~~L~l~~n~i~-~l------------~~l~~l~~L~~L~L~~N~i~~~~~   80 (263)
T 1xeu_A           17 GLANAVKQNLGK-QSVTDLVS--QKELSGVQNFNGDNSNIQ-SL------------AGMQFFTNLKELHLSHNQISDLSP   80 (263)
T ss_dssp             HHHHHHHHHHTC-SCTTSEEC--HHHHTTCSEEECTTSCCC-CC------------TTGGGCTTCCEEECCSSCCCCCGG
T ss_pred             HHHHHHHHHhcC-CCcccccc--hhhcCcCcEEECcCCCcc-cc------------hHHhhCCCCCEEECCCCccCCChh
Confidence            355667777888 67787774  488999999999998876 55            567788889999998888888777


Q ss_pred             ccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           86 GFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        86 ~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                      ...+++|+.++++.+.            +             +            .     .+.+        .. ++|+
T Consensus        81 l~~l~~L~~L~L~~N~------------l-------------~------------~-----l~~~--------~~-~~L~  109 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNR------------L-------------K------------N-----LNGI--------PS-ACLS  109 (263)
T ss_dssp             GTTCSSCCEEECCSSC------------C-------------S------------C-----CTTC--------CC-SSCC
T ss_pred             hccCCCCCEEECCCCc------------c-------------C------------C-----cCcc--------cc-Cccc
Confidence            2247777777765221            0             0            0     0001        12 5667


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      .|++++ .+...                  .....+++|+.|++++| +++++   ..+..+++|+.|++++|.. ..+ 
T Consensus       110 ~L~L~~N~l~~~------------------~~l~~l~~L~~L~Ls~N-~i~~~---~~l~~l~~L~~L~L~~N~i-~~~-  165 (263)
T 1xeu_A          110 RLFLDNNELRDT------------------DSLIHLKNLEILSIRNN-KLKSI---VMLGFLSKLEVLDLHGNEI-TNT-  165 (263)
T ss_dssp             EEECCSSCCSBS------------------GGGTTCTTCCEEECTTS-CCCBC---GGGGGCTTCCEEECTTSCC-CBC-
T ss_pred             EEEccCCccCCC------------------hhhcCcccccEEECCCC-cCCCC---hHHccCCCCCEEECCCCcC-cch-
Confidence            777665 11111                  11456789999999999 88874   3578899999999998753 333 


Q ss_pred             ccCCcccccccccccccceeeccccc
Q 039375          245 INDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                              .....+++|+.|.+.+++
T Consensus       166 --------~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          166 --------GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             --------TTSTTCCCCCEEEEEEEE
T ss_pred             --------HHhccCCCCCEEeCCCCc
Confidence                    113568889999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.03  E-value=5.4e-12  Score=115.76  Aligned_cols=35  Identities=29%  Similarity=0.266  Sum_probs=18.3

Q ss_pred             ccccceeecccccccc-----eeccCCceecCCCccEEEEecC
Q 039375          258 FSKLKALILCDLDSLT-----SFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       258 ~~~L~~L~i~~~~~l~-----~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      .+.|++|.+.+|. +.     .+.  .....+++|++|++++|
T Consensus       369 ~~~L~~L~L~~n~-i~~~~~~~l~--~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          369 GSVLRVLWLADCD-VSDSSCSSLA--ATLLANHSLRELDLSNN  408 (461)
T ss_dssp             TCCCCEEECTTSC-CCHHHHHHHH--HHHHHCCCCCEEECCSS
T ss_pred             CCceEEEECCCCC-CChhhHHHHH--HHHHhCCCccEEECCCC
Confidence            3456666666652 33     221  12234667777777666

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.00  E-value=1.6e-09  Score=89.54  Aligned_cols=147  Identities=14%  Similarity=0.130  Sum_probs=96.8

Q ss_pred             ceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-c-ccccCcEEEEEecCcccccccccccc
Q 039375           36 EELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-F-LARKLERFKISIGNESFMASLPVTKD  113 (311)
Q Consensus        36 q~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-~-~l~~L~~l~~~~~~~~~~~~~p~~~~  113 (311)
                      +.++.+++.+. .+  |         ..+.  ++|+.|++++|.+..++.. + .+++|+.++++.+.            
T Consensus        14 ~~v~c~~~~l~-~i--P---------~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~------------   67 (220)
T 2v9t_B           14 NIVDCRGKGLT-EI--P---------TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ------------   67 (220)
T ss_dssp             TEEECTTSCCS-SC--C---------SSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC------------
T ss_pred             CEEEcCCCCcC-cC--C---------CccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc------------
Confidence            57788887776 66  5         4443  6899999999998888764 3 26777777664221            


Q ss_pred             cccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEEEec-eEecccccccCcccccccEEe
Q 039375          114 WFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDKIL  192 (311)
Q Consensus       114 ~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~~  192 (311)
                                                          ++.+.......+++|+.|++++ .+..++               
T Consensus        68 ------------------------------------i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---------------   96 (220)
T 2v9t_B           68 ------------------------------------ISELAPDAFQGLRSLNSLVLYGNKITELP---------------   96 (220)
T ss_dssp             ------------------------------------CCEECTTTTTTCSSCCEEECCSSCCCCCC---------------
T ss_pred             ------------------------------------CCCcCHHHhhCCcCCCEEECCCCcCCccC---------------
Confidence                                                1001000005567888888876 111111               


Q ss_pred             CCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375          193 LPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       193 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                       +..+..+++|+.|+++++ +++. ..+..+..+++|++|++++|. +..+..       .....+++|+++.+.+.+
T Consensus        97 -~~~f~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           97 -KSLFEGLFSLQLLLLNAN-KINC-LRVDAFQDLHNLNLLSLYDNK-LQTIAK-------GTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             -TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred             -HhHccCCCCCCEEECCCC-CCCE-eCHHHcCCCCCCCEEECCCCc-CCEECH-------HHHhCCCCCCEEEeCCCC
Confidence             111456789999999999 8888 566778899999999999875 333322       112457888999888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.99  E-value=1.1e-09  Score=86.33  Aligned_cols=77  Identities=22%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             CCCCccEEecCCCCCCc--ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc-
Q 039375            6 QVTKLRLLDLRDCFHLK--VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI-   82 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~--~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-   82 (311)
                      ..++|++|++++ +.++  .+|..+ +++++|++|++++|.+. .+            ..++.+++|+.|++++|.+.. 
T Consensus        22 ~~~~L~~L~l~~-n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~-~~------------~~~~~l~~L~~L~Ls~N~l~~~   86 (168)
T 2ell_A           22 TPAAVRELVLDN-CKSNDGKIEGLT-AEFVNLEFLSLINVGLI-SV------------SNLPKLPKLKKLELSENRIFGG   86 (168)
T ss_dssp             CTTSCSEEECCS-CBCBTTBCSSCC-GGGGGCCEEEEESSCCC-CC------------SSCCCCSSCCEEEEESCCCCSC
T ss_pred             CcccCCEEECCC-CCCChhhHHHHH-HhCCCCCEEeCcCCCCC-Ch------------hhhccCCCCCEEECcCCcCchH
Confidence            457788888888 4566  777765 88888888888888765 33            566778888888888777655 


Q ss_pred             cccccc-cccCcEEEE
Q 039375           83 LQEGFL-ARKLERFKI   97 (311)
Q Consensus        83 lp~~~~-l~~L~~l~~   97 (311)
                      +|..+. +++|+.+++
T Consensus        87 ~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           87 LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             CCHHHHHCTTCCEEEC
T ss_pred             HHHHHhhCCCCCEEec
Confidence            444443 555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.98  E-value=4.1e-11  Score=113.40  Aligned_cols=92  Identities=12%  Similarity=0.006  Sum_probs=44.0

Q ss_pred             ccCccEEEEecCCCceeecCccccccCCCCCEEeec-----cCcCceEEeccCCcccccccccccccceeecccccccce
Q 039375          200 FRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY-----GCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTS  274 (311)
Q Consensus       200 l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~-----~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~  274 (311)
                      +++|+.|.+..+ ++++.........+++|+.|+++     +|+.++......+  ...-...+++|++|.+.+  .+..
T Consensus       371 ~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~--~~~l~~~~~~L~~L~L~~--~l~~  445 (594)
T 2p1m_B          371 CPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG--FGAIVEHCKDLRRLSLSG--LLTD  445 (594)
T ss_dssp             CTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH--HHHHHHHCTTCCEEECCS--SCCH
T ss_pred             chhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH--HHHHHhhCCCccEEeecC--cccH
Confidence            566666655444 55542111222346777777777     4444442211000  000013456777777755  2322


Q ss_pred             eccCCceecCCCccEEEEecCC
Q 039375          275 FCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       275 ~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                      .........+++|++|++++|.
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCC
T ss_pred             HHHHHHHHhchhccEeeccCCC
Confidence            2111111237788888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.98  E-value=8.2e-12  Score=114.55  Aligned_cols=90  Identities=14%  Similarity=-0.027  Sum_probs=44.8

Q ss_pred             ccCccEEEEecCCCceeecCccccc-----cCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccce
Q 039375          200 FRNLTKLVAVGCKELIHLVTSSTAK-----TLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTS  274 (311)
Q Consensus       200 l~~L~~L~l~~~~~l~~l~~~~~l~-----~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~  274 (311)
                      +++|+.|++++| ++++ ..+..+.     ..++|++|++++|.....-.    ...+.....+++|++|++++++ +..
T Consensus       340 ~~~L~~L~Ls~n-~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~L~~L~l~~N~-i~~  412 (461)
T 1z7x_W          340 NRFLLELQISNN-RLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSC----SSLAATLLANHSLRELDLSNNC-LGD  412 (461)
T ss_dssp             CSSCCEEECCSS-BCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCCCCCEEECCSSS-CCH
T ss_pred             CCCccEEEccCC-cccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhH----HHHHHHHHhCCCccEEECCCCC-CCH
Confidence            467777777777 5555 2222221     14577777777664321000    0001122346788888888773 332


Q ss_pred             eccCC----ceecCCCccEEEEecCC
Q 039375          275 FCSAN----YTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       275 ~~~~~----~~~~~~~L~~L~i~~c~  296 (311)
                      .....    ......+|+.|.+.++.
T Consensus       413 ~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          413 AGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHHHHhccCCcchhheeecccc
Confidence            21000    01123467777776653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.97  E-value=1.9e-09  Score=101.30  Aligned_cols=69  Identities=17%  Similarity=0.206  Sum_probs=49.8

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      +|++|++++ +.++.+|.++ .  ++|++|++++|.+. .+            .  ..+++|+.|++++|.+..+|. +.
T Consensus        60 ~L~~L~Ls~-n~L~~lp~~l-~--~~L~~L~Ls~N~l~-~i------------p--~~l~~L~~L~Ls~N~l~~ip~-l~  119 (571)
T 3cvr_A           60 QFSELQLNR-LNLSSLPDNL-P--PQITVLEITQNALI-SL------------P--ELPASLEYLDACDNRLSTLPE-LP  119 (571)
T ss_dssp             TCSEEECCS-SCCSCCCSCC-C--TTCSEEECCSSCCS-CC------------C--CCCTTCCEEECCSSCCSCCCC-CC
T ss_pred             CccEEEeCC-CCCCccCHhH-c--CCCCEEECcCCCCc-cc------------c--cccCCCCEEEccCCCCCCcch-hh
Confidence            788888888 5677788765 3  67888888888776 55            2  346788888888888777777 43


Q ss_pred             cccCcEEEEE
Q 039375           89 ARKLERFKIS   98 (311)
Q Consensus        89 l~~L~~l~~~   98 (311)
                       .+|+.++++
T Consensus       120 -~~L~~L~Ls  128 (571)
T 3cvr_A          120 -ASLKHLDVD  128 (571)
T ss_dssp             -TTCCEEECC
T ss_pred             -cCCCEEECC
Confidence             377777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.96  E-value=3.2e-09  Score=87.69  Aligned_cols=148  Identities=14%  Similarity=0.150  Sum_probs=96.0

Q ss_pred             cceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc-c-c-ccccCcEEEEEecCcccccccccc
Q 039375           35 LEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE-G-F-LARKLERFKISIGNESFMASLPVT  111 (311)
Q Consensus        35 Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~-~-~-~l~~L~~l~~~~~~~~~~~~~p~~  111 (311)
                      -++++++++.+. .+  |         ..+.  ..++.|++++|.+..++. . + .+++|+.++++.+.          
T Consensus        13 ~~~l~~s~n~l~-~i--P---------~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~----------   68 (220)
T 2v70_A           13 GTTVDCSNQKLN-KI--P---------EHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK----------   68 (220)
T ss_dssp             TTEEECCSSCCS-SC--C---------SCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC----------
T ss_pred             CCEeEeCCCCcc-cC--c---------cCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc----------
Confidence            468999999887 66  5         4443  457899999999888743 2 3 36777777664211          


Q ss_pred             cccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEEEec-eEecccccccCcccccccE
Q 039375          112 KDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIRR-GIFNGRMLRETFEEVGNDK  190 (311)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~  190 (311)
                                                            ++.+.......+++|+.|++++ .+....             
T Consensus        69 --------------------------------------i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-------------   97 (220)
T 2v70_A           69 --------------------------------------ITDIEEGAFEGASGVNEILLTSNRLENVQ-------------   97 (220)
T ss_dssp             --------------------------------------CCEECTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred             --------------------------------------CCEECHHHhCCCCCCCEEECCCCccCccC-------------
Confidence                                                  1111000005567888888876 111111             


Q ss_pred             EeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375          191 ILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       191 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                         +..+..+++|+.|+++++ +++. ..+..+..+++|+.|++++|. +..+..       .....+++|++|.+.+.+
T Consensus        98 ---~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           98 ---HKMFKGLESLKTLMLRSN-RITC-VGNDSFIGLSSVRLLSLYDNQ-ITTVAP-------GAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             ---GGGGTTCSSCCEEECTTS-CCCC-BCTTSSTTCTTCSEEECTTSC-CCCBCT-------TTTTTCTTCCEEECCSCC
T ss_pred             ---HhHhcCCcCCCEEECCCC-cCCe-ECHhHcCCCccCCEEECCCCc-CCEECH-------HHhcCCCCCCEEEecCcC
Confidence               111456789999999999 8887 556778889999999999875 333322       223567889999888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.95  E-value=1.4e-10  Score=103.22  Aligned_cols=83  Identities=16%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             CCCCCccEEecCCCCCCcccCh----hHHHhcc-ccceEEeccccceeeeeccccccccccccccCCC-----CCccEEE
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAP----NVISSLI-RLEELCMGNCSVEWEVERANTERSNASLDELMLL-----PWLTTLE   74 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~----~i~~~L~-~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L-----~~L~~L~   74 (311)
                      ....+|++|+|++ +.++.++.    +.+.+++ +|++|++++|.+....  +         ..+..+     ++|+.|+
T Consensus        19 ~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~---------~~l~~~l~~~~~~L~~L~   86 (362)
T 3goz_A           19 SIPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKN--S---------DELVQILAAIPANVTSLN   86 (362)
T ss_dssp             TSCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC--H---------HHHHHHHHTSCTTCCEEE
T ss_pred             hCCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH--H---------HHHHHHHhccCCCccEEE
Confidence            4456699999999 57888875    4447788 8999999999886332  2         344443     8999999


Q ss_pred             EeecCccccccc-cc-----c-ccCcEEEEEe
Q 039375           75 IDVKNDSILQEG-FL-----A-RKLERFKISI   99 (311)
Q Consensus        75 l~~~~~~~lp~~-~~-----l-~~L~~l~~~~   99 (311)
                      +++|.+...+.. +.     + ++|+.++++.
T Consensus        87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  118 (362)
T 3goz_A           87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGW  118 (362)
T ss_dssp             CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             CcCCcCChHHHHHHHHHHHhCCCCccEEECcC
Confidence            999887654432 22     3 7899988863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.92  E-value=4.3e-10  Score=91.96  Aligned_cols=80  Identities=21%  Similarity=0.307  Sum_probs=67.0

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      ..+|++|++++ +.++.+|++.++++++|++|++++|.+. .+. +         ..+..+++|++|++++|.+..+|..
T Consensus        27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~Ls~n~l~~~~~~   94 (208)
T 2o6s_A           27 PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP-N---------GVFNKLTSLTYLNLSTNQLQSLPNG   94 (208)
T ss_dssp             CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccC-ccC-h---------hhcCCCCCcCEEECCCCcCCccCHh
Confidence            56899999999 6888898876699999999999999987 552 2         4468899999999999998888875


Q ss_pred             c--ccccCcEEEEE
Q 039375           87 F--LARKLERFKIS   98 (311)
Q Consensus        87 ~--~l~~L~~l~~~   98 (311)
                      .  .+++|+.++++
T Consensus        95 ~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           95 VFDKLTQLKELALN  108 (208)
T ss_dssp             TTTTCTTCCEEECC
T ss_pred             HhcCccCCCEEEcC
Confidence            4  37888888775

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.91  E-value=2.7e-09  Score=94.84  Aligned_cols=152  Identities=12%  Similarity=0.107  Sum_probs=100.9

Q ss_pred             ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccC-CCCCccEEEEeecCccccccc-c
Q 039375           10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELM-LLPWLTTLEIDVKNDSILQEG-F   87 (311)
Q Consensus        10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~-~L~~L~~L~l~~~~~~~lp~~-~   87 (311)
                      -+++++++ +.++.+|.++ .  ..+++|++++|.+. .+. +         ..+. .+++|+.|++++|.+..++.. +
T Consensus        20 ~~~l~c~~-~~l~~iP~~~-~--~~l~~L~Ls~N~l~-~l~-~---------~~~~~~l~~L~~L~L~~N~i~~i~~~~~   84 (361)
T 2xot_A           20 SNILSCSK-QQLPNVPQSL-P--SYTALLDLSHNNLS-RLR-A---------EWTPTRLTNLHSLLLSHNHLNFISSEAF   84 (361)
T ss_dssp             TTEEECCS-SCCSSCCSSC-C--TTCSEEECCSSCCC-EEC-T---------TSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCEEEeCC-CCcCccCccC-C--CCCCEEECCCCCCC-ccC-h---------hhhhhcccccCEEECCCCcCCccChhhc
Confidence            36788888 7888899865 4  36899999999987 552 2         4455 889999999999888887754 3


Q ss_pred             -ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           88 -LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        88 -~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                       .+++|+.++++.+.            +                         +.+.           ......+++|+.
T Consensus        85 ~~l~~L~~L~Ls~N~------------l-------------------------~~~~-----------~~~~~~l~~L~~  116 (361)
T 2xot_A           85 VPVPNLRYLDLSSNH------------L-------------------------HTLD-----------EFLFSDLQALEV  116 (361)
T ss_dssp             TTCTTCCEEECCSSC------------C-------------------------CEEC-----------TTTTTTCTTCCE
T ss_pred             cCCCCCCEEECCCCc------------C-------------------------CcCC-----------HHHhCCCcCCCE
Confidence             37777777765221            0                         0000           000045667777


Q ss_pred             EEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCcccc---ccCCCCCEEeeccCcCceE
Q 039375          167 LFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTA---KTLVRLVTVQVYGCRAMTE  242 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l---~~l~~L~~L~l~~c~~l~~  242 (311)
                      |++++ .+...                .+..+..+++|+.|++++| +++. .+...+   ..+++|+.|++++|. +..
T Consensus       117 L~L~~N~i~~~----------------~~~~~~~l~~L~~L~L~~N-~l~~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~  177 (361)
T 2xot_A          117 LLLYNNHIVVV----------------DRNAFEDMAQLQKLYLSQN-QISR-FPVELIKDGNKLPKLMLLDLSSNK-LKK  177 (361)
T ss_dssp             EECCSSCCCEE----------------CTTTTTTCTTCCEEECCSS-CCCS-CCGGGTC----CTTCCEEECCSSC-CCC
T ss_pred             EECCCCcccEE----------------CHHHhCCcccCCEEECCCC-cCCe-eCHHHhcCcccCCcCCEEECCCCC-CCc
Confidence            77765 11111                1223556789999999999 8887 455555   569999999999875 444


Q ss_pred             E
Q 039375          243 V  243 (311)
Q Consensus       243 ~  243 (311)
                      +
T Consensus       178 l  178 (361)
T 2xot_A          178 L  178 (361)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.88  E-value=2.7e-09  Score=84.82  Aligned_cols=80  Identities=20%  Similarity=0.359  Sum_probs=61.2

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhcc-ccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLI-RLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~-~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      .+.++.+|++|++++ +.++.+|. + ..+. +|++|++++|.+. .+            ..++.+++|+.|++++|.+.
T Consensus        14 ~~~~~~~L~~L~l~~-n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~-~~------------~~l~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           14 QYTNAVRDRELDLRG-YKIPVIEN-L-GATLDQFDAIDFSDNEIR-KL------------DGFPLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             EEECTTSCEEEECTT-SCCCSCCC-G-GGGTTCCSEEECCSSCCC-EE------------CCCCCCSSCCEEECCSSCCC
T ss_pred             hcCCcCCceEEEeeC-CCCchhHH-h-hhcCCCCCEEECCCCCCC-cc------------cccccCCCCCEEECCCCccc
Confidence            356788999999999 68888865 4 6665 9999999999887 45            56788899999999988887


Q ss_pred             cccccc-c-cccCcEEEEE
Q 039375           82 ILQEGF-L-ARKLERFKIS   98 (311)
Q Consensus        82 ~lp~~~-~-l~~L~~l~~~   98 (311)
                      .+|..+ . +++|+.++++
T Consensus        78 ~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           78 RIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             EECSCHHHHCTTCCEEECC
T ss_pred             ccCcchhhcCCCCCEEECC
Confidence            777644 2 5666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.87  E-value=3.1e-09  Score=88.30  Aligned_cols=126  Identities=21%  Similarity=0.329  Sum_probs=82.0

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      ++|++|+|++ +.+..+++..++.+++|++|++++|.+. .+. +         ..+..+++|+.|++++|.+..++...
T Consensus        40 ~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~-~---------~~~~~l~~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           40 TNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLG-ALP-V---------GVFDSLTQLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCCCCC-CcC-h---------hhcccCCCcCEEECCCCcCCccChhH
Confidence            6788888888 6777674443488888888888888876 552 2         34577888888888888887777654


Q ss_pred             --ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc-eeeEEccccCCcceeccccccccccc
Q 039375           88 --LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD-FTDICSMKLQAINNVEYISQSRITLT  164 (311)
Q Consensus        88 --~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-l~~L~l~~~~~~~~~~~~~~~~~~~L  164 (311)
                        .+++|+.++++.+.   +..+|.  .+          ..+++++.+.+..+ ++.+...   .+        ..+++|
T Consensus       108 ~~~l~~L~~L~Ls~N~---l~~lp~--~~----------~~l~~L~~L~L~~N~l~~~~~~---~~--------~~l~~L  161 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNK---LTELPR--GI----------ERLTHLTHLALDQNQLKSIPHG---AF--------DRLSSL  161 (229)
T ss_dssp             TTTCTTCCEEECCSSC---CCSCCT--TG----------GGCTTCSEEECCSSCCCCCCTT---TT--------TTCTTC
T ss_pred             hCcchhhCeEeccCCc---ccccCc--cc----------ccCCCCCEEECCCCcCCccCHH---HH--------hCCCCC
Confidence              37888888775332   223332  12          55667777777665 4444332   12        345566


Q ss_pred             ceEEEec
Q 039375          165 VSLFIRR  171 (311)
Q Consensus       165 ~~L~l~~  171 (311)
                      +.|++.+
T Consensus       162 ~~L~l~~  168 (229)
T 3e6j_A          162 THAYLFG  168 (229)
T ss_dssp             CEEECTT
T ss_pred             CEEEeeC
Confidence            6777655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.85  E-value=8.2e-09  Score=96.97  Aligned_cols=166  Identities=14%  Similarity=0.101  Sum_probs=106.1

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      +++|++|+|++ +.++.+|    +.+++|++|++++|.+. .+  |         . +..  +|+.|++++|.+..+|. 
T Consensus        79 ~~~L~~L~Ls~-N~l~~ip----~~l~~L~~L~Ls~N~l~-~i--p---------~-l~~--~L~~L~Ls~N~l~~lp~-  137 (571)
T 3cvr_A           79 PPQITVLEITQ-NALISLP----ELPASLEYLDACDNRLS-TL--P---------E-LPA--SLKHLDVDNNQLTMLPE-  137 (571)
T ss_dssp             CTTCSEEECCS-SCCSCCC----CCCTTCCEEECCSSCCS-CC--C---------C-CCT--TCCEEECCSSCCSCCCC-
T ss_pred             cCCCCEEECcC-CCCcccc----cccCCCCEEEccCCCCC-Cc--c---------h-hhc--CCCEEECCCCcCCCCCC-
Confidence            37899999999 7889999    34789999999999998 46  5         4 444  99999999999988988 


Q ss_pred             cccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccce
Q 039375           87 FLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVS  166 (311)
Q Consensus        87 ~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~  166 (311)
                       .+++|+.++++.+.   +..+|               ...++++.         |.++.+. ++.+.. . .  ++|+.
T Consensus       138 -~l~~L~~L~Ls~N~---l~~lp---------------~~l~~L~~---------L~Ls~N~-L~~lp~-l-~--~~L~~  184 (571)
T 3cvr_A          138 -LPALLEYINADNNQ---LTMLP---------------ELPTSLEV---------LSVRNNQ-LTFLPE-L-P--ESLEA  184 (571)
T ss_dssp             -CCTTCCEEECCSSC---CSCCC---------------CCCTTCCE---------EECCSSC-CSCCCC-C-C--TTCCE
T ss_pred             -cCccccEEeCCCCc---cCcCC---------------CcCCCcCE---------EECCCCC-CCCcch-h-h--CCCCE
Confidence             67899999886332   11122               12233443         4443321 222111 0 2  57888


Q ss_pred             EEEec-eEecccccccCccccc-ccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEE
Q 039375          167 LFIRR-GIFNGRMLRETFEEVG-NDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV  243 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~-~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~  243 (311)
                      |++++ .+..++.       +. +|       ....+.|+.|++++| +++. . +..+..+++|+.|++++|+..+.+
T Consensus       185 L~Ls~N~L~~lp~-------~~~~L-------~~~~~~L~~L~Ls~N-~l~~-l-p~~l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          185 LDVSTNLLESLPA-------VPVRN-------HHSEETEIFFRCREN-RITH-I-PENILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             EECCSSCCSSCCC-------CC---------------CCEEEECCSS-CCCC-C-CGGGGGSCTTEEEECCSSSCCHHH
T ss_pred             EECcCCCCCchhh-------HHHhh-------hcccccceEEecCCC-ccee-c-CHHHhcCCCCCEEEeeCCcCCCcC
Confidence            88876 1111111       00 00       011233499999999 8887 3 344566999999999988754433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.85  E-value=1.4e-09  Score=83.86  Aligned_cols=77  Identities=18%  Similarity=0.118  Sum_probs=53.0

Q ss_pred             CCCCccEEecCCCCCCc--ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc-
Q 039375            6 QVTKLRLLDLRDCFHLK--VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI-   82 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~--~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-   82 (311)
                      ..++|++|++++ +.++  .+|..+ +.+++|++|++++|.+. .+            ..++.+++|+.|++++|.+.. 
T Consensus        15 ~~~~l~~L~l~~-n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~-~~------------~~~~~l~~L~~L~Ls~n~i~~~   79 (149)
T 2je0_A           15 TPSDVKELVLDN-SRSNEGKLEGLT-DEFEELEFLSTINVGLT-SI------------ANLPKLNKLKKLELSDNRVSGG   79 (149)
T ss_dssp             CGGGCSEEECTT-CBCBTTBCCSCC-TTCTTCCEEECTTSCCC-CC------------TTCCCCTTCCEEECCSSCCCSC
T ss_pred             CCccCeEEEccC-CcCChhHHHHHH-hhcCCCcEEECcCCCCC-Cc------------hhhhcCCCCCEEECCCCcccch
Confidence            456788888888 4565  777765 88888888888888775 33            566777888888888777655 


Q ss_pred             cccccc-cccCcEEEE
Q 039375           83 LQEGFL-ARKLERFKI   97 (311)
Q Consensus        83 lp~~~~-l~~L~~l~~   97 (311)
                      +|..+. +++|+.+++
T Consensus        80 ~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             THHHHHHCTTCCEEEC
T ss_pred             HHHHhhhCCCCCEEEC
Confidence            544443 455555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.82  E-value=1e-08  Score=82.77  Aligned_cols=72  Identities=18%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc--
Q 039375           10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF--   87 (311)
Q Consensus        10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~--   87 (311)
                      -+++++++ +.++.+|.++ .  .+|++|++++|.+. .+  |         ..+..+++|+.|+++.|.+..++...  
T Consensus        12 ~~~l~~~~-~~l~~ip~~~-~--~~l~~L~L~~n~i~-~i--p---------~~~~~l~~L~~L~Ls~N~i~~i~~~~f~   75 (193)
T 2wfh_A           12 DTVVRCSN-KGLKVLPKGI-P--RDVTELYLDGNQFT-LV--P---------KELSNYKHLTLIDLSNNRISTLSNQSFS   75 (193)
T ss_dssp             TTEEECTT-SCCSSCCSCC-C--TTCCEEECCSSCCC-SC--C---------GGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEcCC-CCCCcCCCCC-C--CCCCEEECCCCcCc-hh--H---------HHhhcccCCCEEECCCCcCCEeCHhHcc
Confidence            36788888 7888898865 3  58999999999887 66  6         77888899999999888877766532  


Q ss_pred             ccccCcEEEE
Q 039375           88 LARKLERFKI   97 (311)
Q Consensus        88 ~l~~L~~l~~   97 (311)
                      .+++|+.+++
T Consensus        76 ~l~~L~~L~L   85 (193)
T 2wfh_A           76 NMTQLLTLIL   85 (193)
T ss_dssp             TCTTCCEEEC
T ss_pred             CCCCCCEEEC
Confidence            2455555444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.82  E-value=1.1e-08  Score=82.60  Aligned_cols=73  Identities=19%  Similarity=0.286  Sum_probs=52.2

Q ss_pred             ccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeecccccccccccc-ccCCCCCccEEEEeecCccccc-ccc
Q 039375           10 LRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLD-ELMLLPWLTTLEIDVKNDSILQ-EGF   87 (311)
Q Consensus        10 L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~-~l~~L~~L~~L~l~~~~~~~lp-~~~   87 (311)
                      -+++++++ +.++.+|..+ ..  +|++|++++|.+. .+. +         . .++.+++|++|++++|.+..++ ..+
T Consensus        10 ~~~l~~s~-~~l~~ip~~~-~~--~l~~L~l~~n~i~-~~~-~---------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   74 (192)
T 1w8a_A           10 GTTVDCTG-RGLKEIPRDI-PL--HTTELLLNDNELG-RIS-S---------DGLFGRLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             TTEEECTT-SCCSSCCSCC-CT--TCSEEECCSCCCC-SBC-C---------SCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCEEEcCC-CCcCcCccCC-CC--CCCEEECCCCcCC-ccC-C---------ccccccCCCCCEEECCCCCCCCcCHhHc
Confidence            47899999 7889999876 44  8999999999887 441 1         2 3778899999999888876663 333


Q ss_pred             c-cccCcEEEE
Q 039375           88 L-ARKLERFKI   97 (311)
Q Consensus        88 ~-l~~L~~l~~   97 (311)
                      . +++|+.+++
T Consensus        75 ~~l~~L~~L~L   85 (192)
T 1w8a_A           75 EGASHIQELQL   85 (192)
T ss_dssp             TTCTTCCEEEC
T ss_pred             CCcccCCEEEC
Confidence            2 444554443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=3.8e-08  Score=86.24  Aligned_cols=69  Identities=19%  Similarity=0.261  Sum_probs=47.4

Q ss_pred             CCCccEEecCCCCCCc--------------------ccChhHHHh--------ccccceEEeccccceeeeecccccccc
Q 039375            7 VTKLRLLDLRDCFHLK--------------------VIAPNVISS--------LIRLEELCMGNCSVEWEVERANTERSN   58 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~--------------------~lp~~i~~~--------L~~Lq~L~l~~~~~~~~~~~p~~~~~~   58 (311)
                      +++|++|||++ +.+.                    .+|+..+..        +.+|++|++.. .+. .+. +      
T Consensus        48 l~~L~~LdLs~-n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~-~------  117 (329)
T 3sb4_A           48 FPSLKVLDISN-AEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIE-D------  117 (329)
T ss_dssp             CTTCCEEEEEE-EEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EEC-T------
T ss_pred             hccCeEEecCc-ceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chh-H------
Confidence            77899999998 5666                    455555566        77788888877 555 452 2      


Q ss_pred             ccccccCCCCCccEEEEeecCccccccccc
Q 039375           59 ASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus        59 ~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                         ..+..+++|+.+++..+.+..++....
T Consensus       118 ---~aF~~~~~L~~l~l~~n~i~~i~~~aF  144 (329)
T 3sb4_A          118 ---AAFKGCDNLKICQIRKKTAPNLLPEAL  144 (329)
T ss_dssp             ---TTTTTCTTCCEEEBCCSSCCEECTTSS
T ss_pred             ---HHhhcCcccceEEcCCCCccccchhhh
Confidence               456677778888887777666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.72  E-value=1.1e-08  Score=82.72  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=74.3

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-   86 (311)
                      .+|++|++++ +.++.+|..+ +.+.+|++|++++|.+. .+. +         ..+..+++|+.|++++|.+..++.. 
T Consensus        31 ~~l~~L~L~~-n~i~~ip~~~-~~l~~L~~L~Ls~N~i~-~i~-~---------~~f~~l~~L~~L~Ls~N~l~~i~~~~   97 (193)
T 2wfh_A           31 RDVTELYLDG-NQFTLVPKEL-SNYKHLTLIDLSNNRIS-TLS-N---------QSFSNMTQLLTLILSYNRLRCIPPRT   97 (193)
T ss_dssp             TTCCEEECCS-SCCCSCCGGG-GGCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             CCCCEEECCC-CcCchhHHHh-hcccCCCEEECCCCcCC-EeC-H---------hHccCCCCCCEEECCCCccCEeCHHH
Confidence            5788899998 7888888776 88899999999998887 442 3         5678888899999988888877764 


Q ss_pred             c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc
Q 039375           87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD  138 (311)
Q Consensus        87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  138 (311)
                      + .+++|+.++++.+.   +..+|.. .+          ..+++++.+.+.++
T Consensus        98 f~~l~~L~~L~L~~N~---l~~~~~~-~~----------~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGND---ISVVPEG-AF----------NDLSALSHLAIGAN  136 (193)
T ss_dssp             TTTCTTCCEEECCSSC---CCBCCTT-TT----------TTCTTCCEEECCSS
T ss_pred             hCCCCCCCEEECCCCC---CCeeChh-hh----------hcCccccEEEeCCC
Confidence            3 37888888876332   1122210 11          45667777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.72  E-value=2.8e-09  Score=94.77  Aligned_cols=226  Identities=9%  Similarity=0.010  Sum_probs=118.2

Q ss_pred             cCCCC-CccEEecCCCCCCcccChhHHHhc-----cccceEEeccccceeeeeccccccccccccccCCC-CCccEEEEe
Q 039375            4 LGQVT-KLRLLDLRDCFHLKVIAPNVISSL-----IRLEELCMGNCSVEWEVERANTERSNASLDELMLL-PWLTTLEID   76 (311)
Q Consensus         4 i~~L~-~L~~L~L~~c~~l~~lp~~i~~~L-----~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L-~~L~~L~l~   76 (311)
                      +..++ +|++|+|++ +.++......+..+     ++|++|++++|.+....  +     ......+..+ ++|+.|+++
T Consensus        46 l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~--~-----~~l~~~l~~~~~~L~~L~Ls  117 (362)
T 3goz_A           46 FANTPASVTSLNLSG-NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS--S-----DELVKTLAAIPFTITVLDLG  117 (362)
T ss_dssp             HHTCCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC--H-----HHHHHHHHTSCTTCCEEECC
T ss_pred             HHhCCCceeEEECcC-CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH--H-----HHHHHHHHhCCCCccEEECc
Confidence            45677 899999999 68887654444776     89999999999986332  2     0111234555 899999999


Q ss_pred             ecCcccccccc-c------cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCC
Q 039375           77 VKNDSILQEGF-L------ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQA  149 (311)
Q Consensus        77 ~~~~~~lp~~~-~------l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~  149 (311)
                      +|.+...+... .      ..+|+.++++.+.  +...-..  .+     ...+ ....        ..++.|.+..+ .
T Consensus       118 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~--~l-----~~~l-~~~~--------~~L~~L~Ls~n-~  178 (362)
T 3goz_A          118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSD--EL-----IQIL-AAIP--------ANVNSLNLRGN-N  178 (362)
T ss_dssp             SSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHH--HH-----HHHH-HTSC--------TTCCEEECTTS-C
T ss_pred             CCcCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHH--HH-----HHHH-hcCC--------ccccEeeecCC-C
Confidence            99877665432 1      2589998875322  1110000  00     0000 0111        12345555543 2


Q ss_pred             cceeccccc----ccc-cccceEEEeceEecccccccCcccccccEEeCCCCccc-ccCccEEEEecCCCceeecCc---
Q 039375          150 INNVEYISQ----SRI-TLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVS-FRNLTKLVAVGCKELIHLVTS---  220 (311)
Q Consensus       150 ~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~-l~~L~~L~l~~~~~l~~l~~~---  220 (311)
                      ++.......    ... ++|++|++++.-  +.....  ..+.       ..... .++|+.|++++| .+++ ...   
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~--~~l~-------~~l~~~~~~L~~L~Ls~N-~l~~-~~~~~l  245 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANL--LGLKSY--AELA-------YIFSSIPNHVVSLNLCLN-CLHG-PSLENL  245 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCH--HHHH-------HHHHHSCTTCCEEECCSS-CCCC-CCHHHH
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHH--HHHH-------HHHhcCCCCceEEECcCC-CCCc-HHHHHH
Confidence            322221110    233 478888887611  100000  0000       00112 347888888888 7776 322   


Q ss_pred             -cccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeeccccc
Q 039375          221 -STAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLD  270 (311)
Q Consensus       221 -~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~  270 (311)
                       ..+..+++|++|++++|.. ..+..............+++|+.|++++++
T Consensus       246 ~~~~~~l~~L~~L~L~~n~l-~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          246 KLLKDSLKHLQTVYLDYDIV-KNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHTTTTTTTCSEEEEEHHHH-TTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHhcCCCccEEEeccCCc-cccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence             2346678888888887751 111000000001112345667777776653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.71  E-value=1.1e-08  Score=99.22  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~   81 (311)
                      ..+..+.+|++|+|++ +.+..+|.++ .++.+|++|++++|.+. .+  |         ..++.|++|+.|++++|.+.
T Consensus       218 ~~~~~l~~L~~L~Ls~-n~l~~l~~~~-~~l~~L~~L~Ls~N~l~-~l--p---------~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSN-LQIFNISANI-FKYDFLTRLYLNGNSLT-EL--P---------AEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----CCCCCCEEECTT-SCCSCCCGGG-GGCCSCSCCBCTTSCCS-CC--C---------GGGGGGTTCCEEECTTSCCS
T ss_pred             hhhccCCCCcEEECCC-CCCCCCChhh-cCCCCCCEEEeeCCcCc-cc--C---------hhhhCCCCCCEEeCcCCcCC
Confidence            3467788888888888 6677888887 78888888888888887 67  6         77888888888888888888


Q ss_pred             ccccccc-cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc
Q 039375           82 ILQEGFL-ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD  138 (311)
Q Consensus        82 ~lp~~~~-l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  138 (311)
                      .+|..+. +.+|+.|+++.+.   +..+|..  +          +.+++|+.|.+.++
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~---l~~lp~~--~----------~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNM---VTTLPWE--F----------GNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSC---CCCCCSS--T----------TSCTTCCCEECTTS
T ss_pred             ccChhhcCCCCCCEEECCCCC---CCccChh--h----------hcCCCccEEeCCCC
Confidence            8888775 7888888876332   2345432  2          55666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.68  E-value=4.8e-08  Score=78.70  Aligned_cols=78  Identities=14%  Similarity=0.131  Sum_probs=65.2

Q ss_pred             CccEEecCCCCCCcccChh-HHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375            9 KLRLLDLRDCFHLKVIAPN-VISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-   86 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~-i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-   86 (311)
                      +|++|++++ +.++.+++. +++++++|++|++++|.+....  |         ..++.+++|+.|++++|.+..++.. 
T Consensus        30 ~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~---------~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           30 HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIE--P---------NAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--T---------TTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CCCEEECCC-CcCCccCCccccccCCCCCEEECCCCCCCCcC--H---------hHcCCcccCCEEECCCCcCCccCHHH
Confidence            899999999 788888764 3499999999999999988444  5         7888999999999999998887765 


Q ss_pred             c-ccccCcEEEEE
Q 039375           87 F-LARKLERFKIS   98 (311)
Q Consensus        87 ~-~l~~L~~l~~~   98 (311)
                      + .+++|+.++++
T Consensus        98 ~~~l~~L~~L~L~  110 (192)
T 1w8a_A           98 FLGLHQLKTLNLY  110 (192)
T ss_dssp             STTCTTCCEEECC
T ss_pred             hcCCCCCCEEECC
Confidence            3 38899998876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.66  E-value=9.7e-08  Score=75.72  Aligned_cols=74  Identities=14%  Similarity=0.108  Sum_probs=53.3

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF-   87 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~-   87 (311)
                      +.+.+++++ +.++.+|.++   ..+|++|++++|.+. .+. +         ..++.+++|+.|++++|.+..+|... 
T Consensus         8 ~~~~l~~~~-~~l~~~p~~~---~~~l~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~   72 (177)
T 2o6r_A            8 SGTEIRCNS-KGLTSVPTGI---PSSATRLELESNKLQ-SLP-H---------GVFDKLTQLTKLSLSQNQIQSLPDGVF   72 (177)
T ss_dssp             ETTEEECCS-SCCSSCCTTC---CTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred             CCCEEEecC-CCCccCCCCC---CCCCcEEEeCCCccc-EeC-H---------HHhcCcccccEEECCCCcceEeChhHc
Confidence            467888988 7888998754   368999999999887 442 2         45678899999999888777666542 


Q ss_pred             -ccccCcEEEE
Q 039375           88 -LARKLERFKI   97 (311)
Q Consensus        88 -~l~~L~~l~~   97 (311)
                       .+++|+.+++
T Consensus        73 ~~l~~L~~L~l   83 (177)
T 2o6r_A           73 DKLTKLTILYL   83 (177)
T ss_dssp             TTCTTCCEEEC
T ss_pred             cCCCccCEEEC
Confidence             1444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.63  E-value=1.1e-08  Score=78.75  Aligned_cols=84  Identities=19%  Similarity=0.185  Sum_probs=69.2

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++.+++|++|++++ +.++.+ ..+ +++++|++|++++|.+...+  |         ..++.+++|+.|++++|.+
T Consensus        35 ~~~~~~l~~L~~L~l~~-n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~--~---------~~~~~l~~L~~L~ls~N~i  100 (149)
T 2je0_A           35 EGLTDEFEELEFLSTIN-VGLTSI-ANL-PKLNKLKKLELSDNRVSGGL--E---------VLAEKCPNLTHLNLSGNKI  100 (149)
T ss_dssp             CSCCTTCTTCCEEECTT-SCCCCC-TTC-CCCTTCCEEECCSSCCCSCT--H---------HHHHHCTTCCEEECTTSCC
T ss_pred             HHHHhhcCCCcEEECcC-CCCCCc-hhh-hcCCCCCEEECCCCcccchH--H---------HHhhhCCCCCEEECCCCcC
Confidence            44578899999999999 588877 444 99999999999999987445  5         5666799999999999998


Q ss_pred             cccc--cccc-cccCcEEEEE
Q 039375           81 SILQ--EGFL-ARKLERFKIS   98 (311)
Q Consensus        81 ~~lp--~~~~-l~~L~~l~~~   98 (311)
                      ..+|  ..+. +++|+.++++
T Consensus       101 ~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A          101 KDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             CSHHHHGGGGGCTTCCEEECT
T ss_pred             CChHHHHHHhhCCCCCEEeCc
Confidence            8865  5553 8899999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.63  E-value=3.7e-08  Score=78.18  Aligned_cols=80  Identities=18%  Similarity=0.250  Sum_probs=57.9

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      ..+|++|++++ +.++.+|+..++++++|++|++++|.+. .+. +         ..++.+++|+.|++++|.+..+|..
T Consensus        27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~---------~~~~~l~~L~~L~l~~N~l~~~~~~   94 (177)
T 2o6r_A           27 PSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLP-D---------GVFDKLTKLTILYLHENKLQSLPNG   94 (177)
T ss_dssp             CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCcEEEeCC-CcccEeCHHHhcCcccccEEECCCCcce-EeC-h---------hHccCCCccCEEECCCCCccccCHH
Confidence            35788888888 6677777665578888888888888776 441 2         3457788888888888877777765


Q ss_pred             c--ccccCcEEEEE
Q 039375           87 F--LARKLERFKIS   98 (311)
Q Consensus        87 ~--~l~~L~~l~~~   98 (311)
                      .  .+++|+.++++
T Consensus        95 ~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           95 VFDKLTQLKELALD  108 (177)
T ss_dssp             TTTTCTTCCEEECC
T ss_pred             HhhCCcccCEEECc
Confidence            3  37788887775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.62  E-value=3.1e-08  Score=78.63  Aligned_cols=80  Identities=23%  Similarity=0.297  Sum_probs=55.9

Q ss_pred             cCCCC-CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCcc
Q 039375            4 LGQVT-KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKNDS   81 (311)
Q Consensus         4 i~~L~-~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~~   81 (311)
                      +..+. +|++|++++ +.++.+ +.+ +.+++|++|++++|.+. .+  |         ..+ +.+++|+.|++++|.+.
T Consensus        37 ~~~~~~~L~~L~Ls~-N~l~~~-~~l-~~l~~L~~L~Ls~N~l~-~~--~---------~~~~~~l~~L~~L~L~~N~i~  101 (176)
T 1a9n_A           37 LGATLDQFDAIDFSD-NEIRKL-DGF-PLLRRLKTLLVNNNRIC-RI--G---------EGLDQALPDLTELILTNNSLV  101 (176)
T ss_dssp             GGGGTTCCSEEECCS-SCCCEE-CCC-CCCSSCCEEECCSSCCC-EE--C---------SCHHHHCTTCCEEECCSCCCC
T ss_pred             hhhcCCCCCEEECCC-CCCCcc-ccc-ccCCCCCEEECCCCccc-cc--C---------cchhhcCCCCCEEECCCCcCC
Confidence            33444 788888888 577776 344 77888888888888776 55  3         343 67778888888887777


Q ss_pred             cccc--ccc-cccCcEEEEE
Q 039375           82 ILQE--GFL-ARKLERFKIS   98 (311)
Q Consensus        82 ~lp~--~~~-l~~L~~l~~~   98 (311)
                      .+|.  .+. +++|+.++++
T Consensus       102 ~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A          102 ELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CGGGGGGGGGCTTCCEEECC
T ss_pred             cchhhHhhhcCCCCCEEEec
Confidence            7776  443 6777777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.59  E-value=1.1e-08  Score=82.97  Aligned_cols=76  Identities=17%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             CccEEecCCC-CCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            9 KLRLLDLRDC-FHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         9 ~L~~L~L~~c-~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      .|+...+.++ ..++.+|..+ +++++|++|++++|.+. .+            ..++.+++|+.|++++|.+..+|..+
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~-~l------------~~~~~l~~L~~L~l~~n~l~~l~~~~   89 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIE-KI------------SSLSGMENLRILSLGRNLIKKIENLD   89 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEES-CC------------CCHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred             chheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCc-cc------------cccccCCCCCEEECCCCCcccccchh
Confidence            3455555542 2455666666 88999999999988776 34            46667788889999888877777655


Q ss_pred             c-cccCcEEEEE
Q 039375           88 L-ARKLERFKIS   98 (311)
Q Consensus        88 ~-l~~L~~l~~~   98 (311)
                      . +++|+.++++
T Consensus        90 ~~~~~L~~L~L~  101 (198)
T 1ds9_A           90 AVADTLEELWIS  101 (198)
T ss_dssp             HHHHHCSEEEEE
T ss_pred             hcCCcCCEEECc
Confidence            4 5777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.59  E-value=5.3e-08  Score=77.23  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=57.5

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-   86 (311)
                      .+|++|+|++ +.++.++++.++++++|++|++++|.+. .+. +         ..++.+++|+.|++++|.+..+|.. 
T Consensus        33 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~-~---------~~~~~l~~L~~L~L~~N~l~~l~~~~  100 (174)
T 2r9u_A           33 TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLT-AIP-T---------GVFDKLTQLTQLDLNDNHLKSIPRGA  100 (174)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCC-ccC-h---------hHhCCcchhhEEECCCCccceeCHHH
Confidence            6788888888 6777775544488888888888888876 451 1         2346788888888888888777775 


Q ss_pred             cc-cccCcEEEEE
Q 039375           87 FL-ARKLERFKIS   98 (311)
Q Consensus        87 ~~-l~~L~~l~~~   98 (311)
                      +. +++|+.+++.
T Consensus       101 ~~~l~~L~~L~L~  113 (174)
T 2r9u_A          101 FDNLKSLTHIYLY  113 (174)
T ss_dssp             TTTCTTCSEEECC
T ss_pred             hccccCCCEEEeC
Confidence            33 7788887775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.58  E-value=5.6e-08  Score=85.67  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=72.6

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |. ++.+++|++|+|++++.++.+|++.++.|.+|++|++++|.+.+..  |         ..++.|++|+.|++++|.+
T Consensus        25 p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~---------~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           25 HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--P---------DAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--T---------TGGGSCSCCCEEECCSSCC
T ss_pred             CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--H---------HHhcCCcCCCEEeCCCCcc
Confidence            55 8889999999999668999998765599999999999999998444  5         6778999999999999999


Q ss_pred             cccccccc-cccCcEEEEEe
Q 039375           81 SILQEGFL-ARKLERFKISI   99 (311)
Q Consensus        81 ~~lp~~~~-l~~L~~l~~~~   99 (311)
                      ..+|..+. ...|+.+.+..
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~  112 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSG  112 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCS
T ss_pred             ceeCHHHcccCCceEEEeeC
Confidence            99987653 33488888763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.56  E-value=6.7e-08  Score=76.31  Aligned_cols=79  Identities=23%  Similarity=0.293  Sum_probs=55.1

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc-
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG-   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~-   86 (311)
                      .+|++|+|++ +.++.++++.++++++|++|++++|.+. .+. +         ..+..+++|+.|++++|.+..+|.. 
T Consensus        30 ~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~-~---------~~f~~l~~L~~L~L~~N~l~~~~~~~   97 (170)
T 3g39_A           30 TTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP-A---------GVFDKLTQLTQLSLNDNQLKSIPRGA   97 (170)
T ss_dssp             TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcC-ccC-h---------hhccCCCCCCEEECCCCccCEeCHHH
Confidence            6777888887 6777775544477888888888888776 441 2         3356777888888877777777764 


Q ss_pred             c-ccccCcEEEEE
Q 039375           87 F-LARKLERFKIS   98 (311)
Q Consensus        87 ~-~l~~L~~l~~~   98 (311)
                      + .+++|+.++++
T Consensus        98 ~~~l~~L~~L~L~  110 (170)
T 3g39_A           98 FDNLKSLTHIWLL  110 (170)
T ss_dssp             TTTCTTCCEEECC
T ss_pred             hcCCCCCCEEEeC
Confidence            3 26777777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.56  E-value=3.3e-08  Score=95.77  Aligned_cols=84  Identities=15%  Similarity=0.050  Sum_probs=76.1

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++.+++|++|+|++ +.++.+|.++ ++|++|++|++++|.+. .+  |         .+++.|++|++|++++|.+
T Consensus       240 ~~~~~~l~~L~~L~Ls~-N~l~~lp~~~-~~l~~L~~L~Ls~N~l~-~l--p---------~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          240 SANIFKYDFLTRLYLNG-NSLTELPAEI-KNLSNLRVLDLSHNRLT-SL--P---------AELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             CGGGGGCCSCSCCBCTT-SCCSCCCGGG-GGGTTCCEEECTTSCCS-SC--C---------SSGGGGTTCSEEECCSSCC
T ss_pred             ChhhcCCCCCCEEEeeC-CcCcccChhh-hCCCCCCEEeCcCCcCC-cc--C---------hhhcCCCCCCEEECCCCCC
Confidence            45677899999999999 6888999988 99999999999999998 77  7         8899999999999999999


Q ss_pred             cccccccc-cccCcEEEEE
Q 039375           81 SILQEGFL-ARKLERFKIS   98 (311)
Q Consensus        81 ~~lp~~~~-l~~L~~l~~~   98 (311)
                      ..+|..+. +++|+.++++
T Consensus       306 ~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          306 TTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             CCCCSSTTSCTTCCCEECT
T ss_pred             CccChhhhcCCCccEEeCC
Confidence            99998875 8999999885

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.56  E-value=7.7e-08  Score=75.60  Aligned_cols=84  Identities=18%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++.+++|++|++++ +.++.+ ..+ +.+++|++|++++|.+...+  |         ..++.+++|+.|++++|.+
T Consensus        42 ~~~~~~l~~L~~L~l~~-n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~--~---------~~~~~l~~L~~L~Ls~N~l  107 (168)
T 2ell_A           42 EGLTAEFVNLEFLSLIN-VGLISV-SNL-PKLPKLKKLELSENRIFGGL--D---------MLAEKLPNLTHLNLSGNKL  107 (168)
T ss_dssp             SSCCGGGGGCCEEEEES-SCCCCC-SSC-CCCSSCCEEEEESCCCCSCC--C---------HHHHHCTTCCEEECBSSSC
T ss_pred             HHHHHhCCCCCEEeCcC-CCCCCh-hhh-ccCCCCCEEECcCCcCchHH--H---------HHHhhCCCCCEEeccCCcc
Confidence            34567788999999999 567777 444 88999999999999887445  4         5556688999999998888


Q ss_pred             cccc--cccc-cccCcEEEEE
Q 039375           81 SILQ--EGFL-ARKLERFKIS   98 (311)
Q Consensus        81 ~~lp--~~~~-l~~L~~l~~~   98 (311)
                      ..+|  ..+. +++|+.++++
T Consensus       108 ~~~~~~~~l~~l~~L~~L~l~  128 (168)
T 2ell_A          108 KDISTLEPLKKLECLKSLDLF  128 (168)
T ss_dssp             CSSGGGGGGSSCSCCCEEECC
T ss_pred             CcchhHHHHhcCCCCCEEEee
Confidence            8776  3443 7888888876

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.52  E-value=9.8e-08  Score=75.66  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++.+++|++|+|++ +.++.+|+++++++++|++|++++|.+. .+. +         ..++.+++|+.|++++|..
T Consensus        50 ~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~-~---------~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           50 PGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIP-R---------GAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCSEEECCSSCB
T ss_pred             HHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCCccc-eeC-H---------HHhccccCCCEEEeCCCCc
Confidence            45688999999999999 7999999887699999999999999998 552 2         3488899999999999988


Q ss_pred             ccccccc
Q 039375           81 SILQEGF   87 (311)
Q Consensus        81 ~~lp~~~   87 (311)
                      ...+..+
T Consensus       118 ~c~~~~~  124 (174)
T 2r9u_A          118 DCECRDI  124 (174)
T ss_dssp             CTTBGGG
T ss_pred             ccccccH
Confidence            7776643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.51  E-value=1e-07  Score=89.72  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=65.4

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc-
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF-   87 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~-   87 (311)
                      .|++|+|++ +.++.+|. + +.+++|++|++++|.+. .+  |         ..++.+++|+.|++++|.+..+| .+ 
T Consensus       442 ~L~~L~Ls~-n~l~~lp~-~-~~l~~L~~L~Ls~N~l~-~l--p---------~~~~~l~~L~~L~Ls~N~l~~lp-~l~  505 (567)
T 1dce_A          442 DVRVLHLAH-KDLTVLCH-L-EQLLLVTHLDLSHNRLR-AL--P---------PALAALRCLEVLQASDNALENVD-GVA  505 (567)
T ss_dssp             TCSEEECTT-SCCSSCCC-G-GGGTTCCEEECCSSCCC-CC--C---------GGGGGCTTCCEEECCSSCCCCCG-GGT
T ss_pred             CceEEEecC-CCCCCCcC-c-cccccCcEeecCccccc-cc--c---------hhhhcCCCCCEEECCCCCCCCCc-ccC
Confidence            588999999 68888987 5 99999999999999998 77  7         88999999999999999988888 45 


Q ss_pred             ccccCcEEEEEe
Q 039375           88 LARKLERFKISI   99 (311)
Q Consensus        88 ~l~~L~~l~~~~   99 (311)
                      .+++|+.++++.
T Consensus       506 ~l~~L~~L~Ls~  517 (567)
T 1dce_A          506 NLPRLQELLLCN  517 (567)
T ss_dssp             TCSSCCEEECCS
T ss_pred             CCCCCcEEECCC
Confidence            488999998863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.51  E-value=3.4e-09  Score=85.94  Aligned_cols=83  Identities=17%  Similarity=0.142  Sum_probs=70.4

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++++++|++|++++ +.++.+| .+ +++++|++|++++|.+. .+  |         ..++.+++|+.|++++|.+..
T Consensus        43 ~~~~l~~L~~L~ls~-n~l~~l~-~~-~~l~~L~~L~l~~n~l~-~l--~---------~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           43 TLSTLKACKHLALST-NNIEKIS-SL-SGMENLRILSLGRNLIK-KI--E---------NLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHHTTTCSEEECSE-EEESCCC-CH-HHHTTCCEEEEEEEEEC-SC--S---------SHHHHHHHCSEEEEEEEECCC
T ss_pred             HHhcCCCCCEEECCC-CCCcccc-cc-ccCCCCCEEECCCCCcc-cc--c---------chhhcCCcCCEEECcCCcCCc
Confidence            577899999999999 6888899 55 99999999999999987 66  5         566677899999999999888


Q ss_pred             cccccccccCcEEEEEec
Q 039375           83 LQEGFLARKLERFKISIG  100 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~~~  100 (311)
                      +|....+++|+.++++.+
T Consensus       108 l~~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A          108 LSGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             HHHHHHHHHSSEEEESEE
T ss_pred             CCccccCCCCCEEECCCC
Confidence            884334899999988643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.46  E-value=2.1e-07  Score=87.56  Aligned_cols=80  Identities=24%  Similarity=0.297  Sum_probs=72.0

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      ++.+++|++|+|++ +.++.+|..+ +++++|++|++++|.+. .+            ..++.+++|+.|++++|.+..+
T Consensus       459 ~~~l~~L~~L~Ls~-N~l~~lp~~~-~~l~~L~~L~Ls~N~l~-~l------------p~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          459 LEQLLLVTHLDLSH-NRLRALPPAL-AALRCLEVLQASDNALE-NV------------DGVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             GGGGTTCCEEECCS-SCCCCCCGGG-GGCTTCCEEECCSSCCC-CC------------GGGTTCSSCCEEECCSSCCCSS
T ss_pred             ccccccCcEeecCc-ccccccchhh-hcCCCCCEEECCCCCCC-CC------------cccCCCCCCcEEECCCCCCCCC
Confidence            88899999999999 7889999987 99999999999999987 45            5788999999999999998888


Q ss_pred             --ccccc-cccCcEEEEE
Q 039375           84 --QEGFL-ARKLERFKIS   98 (311)
Q Consensus        84 --p~~~~-l~~L~~l~~~   98 (311)
                        |..+. +++|+.++++
T Consensus       524 ~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          524 AAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             STTGGGGGCTTCCEEECT
T ss_pred             CCcHHHhcCCCCCEEEec
Confidence              77775 8999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.42  E-value=2.7e-07  Score=72.80  Aligned_cols=73  Identities=21%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..++.+++|++|+|++ +.++.+|++++.++++|++|++++|.+. .+. +         ..++.+++|+.|++++|..
T Consensus        47 ~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~-~---------~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           47 PGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIP-R---------GAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCC-T---------TTTTTCTTCCEEECCSSCB
T ss_pred             hhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCCccC-EeC-H---------HHhcCCCCCCEEEeCCCCC
Confidence            45688999999999999 7899999887799999999999999998 552 2         4588999999999999886


Q ss_pred             ccccc
Q 039375           81 SILQE   85 (311)
Q Consensus        81 ~~lp~   85 (311)
                      ...+.
T Consensus       115 ~c~c~  119 (170)
T 3g39_A          115 DCACS  119 (170)
T ss_dssp             CTTBG
T ss_pred             CCCch
Confidence            65544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=1.4e-07  Score=74.33  Aligned_cols=88  Identities=11%  Similarity=0.173  Sum_probs=55.8

Q ss_pred             CccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCccccccccc----ccccceeecccccccceecc
Q 039375          202 NLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIV----FSKLKALILCDLDSLTSFCS  277 (311)
Q Consensus       202 ~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~----~~~L~~L~i~~~~~l~~~~~  277 (311)
                      +|+.|++++| .+++ .....+..+++|+.|++++|..+++.....       ...    .++|++|++++|+++++-.-
T Consensus        62 ~L~~LDLs~~-~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-------L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDS-CIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLER-------LSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESC-CCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHH-------HHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCC-CccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHH-------HHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            5778888887 4766 455556677788888888887665531100       011    24677888888877765421


Q ss_pred             CCceecCCCccEEEEecCCCCe
Q 039375          278 ANYTFKFPSLEYLEVIGCPKMK  299 (311)
Q Consensus       278 ~~~~~~~~~L~~L~i~~c~~l~  299 (311)
                      . ....+++|++|++++|++++
T Consensus       133 ~-~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          133 I-ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             H-HGGGCTTCCEEEEESCTTCC
T ss_pred             H-HHhcCCCCCEEECCCCCCCC
Confidence            1 12357888888888887765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.31  E-value=5e-05  Score=68.21  Aligned_cols=74  Identities=14%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      +|+.+.+..  .++.|+...+... +|+.+.+.. .+. .+. +         ..+..+.+|+.+++..+.+..++....
T Consensus       136 ~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~-~---------~aF~~c~~L~~l~l~~n~l~~I~~~aF  200 (401)
T 4fdw_A          136 QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLE-QLK-E---------DIFYYCYNLKKADLSKTKITKLPASTF  200 (401)
T ss_dssp             CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCC-EEC-S---------STTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred             CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-Ccc-Eeh-H---------HHhhCcccCCeeecCCCcceEechhhE
Confidence            566666655  2566655444443 566666664 333 332 2         445667777777777666666666543


Q ss_pred             -cccCcEEEE
Q 039375           89 -ARKLERFKI   97 (311)
Q Consensus        89 -l~~L~~l~~   97 (311)
                       ..+|+.+.+
T Consensus       201 ~~~~L~~l~l  210 (401)
T 4fdw_A          201 VYAGIEEVLL  210 (401)
T ss_dssp             TTCCCSEEEC
T ss_pred             eecccCEEEe
Confidence             456665554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.22  E-value=4.4e-06  Score=72.94  Aligned_cols=40  Identities=13%  Similarity=0.095  Sum_probs=34.5

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeee
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEV   49 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~   49 (311)
                      +.+|+.|+|.+  .++.|+++.+..+.+|++|++..+.+. .+
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i  139 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAP-NL  139 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCC-EE
T ss_pred             cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcc-cc
Confidence            89999999998  788998877799999999999999875 44

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.12  E-value=8.9e-05  Score=66.55  Aligned_cols=76  Identities=5%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      .+|+.+.+..  .++.++.+.+..+.+|+.+++..|.+. .+  +         ...-...+|+.+.+. +.+..++...
T Consensus       157 ~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I--~---------~~aF~~~~L~~l~lp-~~l~~I~~~a  221 (401)
T 4fdw_A          157 STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKIT-KL--P---------ASTFVYAGIEEVLLP-VTLKEIGSQA  221 (401)
T ss_dssp             CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCS-EE--C---------TTTTTTCCCSEEECC-TTCCEECTTT
T ss_pred             CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCcce-Ee--c---------hhhEeecccCEEEeC-CchheehhhH
Confidence            4789999886  678887766799999999999998887 66  3         222235789998887 3467777655


Q ss_pred             c--cccCcEEEEE
Q 039375           88 L--ARKLERFKIS   98 (311)
Q Consensus        88 ~--l~~L~~l~~~   98 (311)
                      .  +.+|+.+.+.
T Consensus       222 F~~~~~L~~l~l~  234 (401)
T 4fdw_A          222 FLKTSQLKTIEIP  234 (401)
T ss_dssp             TTTCTTCCCEECC
T ss_pred             hhCCCCCCEEecC
Confidence            3  6677777664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.80  E-value=1.6e-05  Score=69.77  Aligned_cols=69  Identities=20%  Similarity=0.203  Sum_probs=55.8

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccc-cCCCCCccEEEEeecCc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDE-LMLLPWLTTLEIDVKND   80 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~-l~~L~~L~~L~l~~~~~   80 (311)
                      ..|+.|++|++|+|++ +.++.+|++.+++|++|++|+|++|.+. .+  |         .+ +..++ |+.|++.+|..
T Consensus        50 ~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~--~---------~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           50 RDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALE-SL--S---------WKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             GGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCS-CC--C---------STTTCSCC-CCEEECCSSCC
T ss_pred             hHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCCccc-ee--C---------HHHcccCC-ceEEEeeCCCc
Confidence            4588999999999999 7899887766699999999999999998 55  3         33 33444 99999998876


Q ss_pred             cccc
Q 039375           81 SILQ   84 (311)
Q Consensus        81 ~~lp   84 (311)
                      ....
T Consensus       116 ~c~c  119 (347)
T 2ifg_A          116 HCSC  119 (347)
T ss_dssp             CCCG
T ss_pred             cCCC
Confidence            5443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.67  E-value=3.2e-05  Score=60.81  Aligned_cols=70  Identities=19%  Similarity=0.262  Sum_probs=48.6

Q ss_pred             ccccCccEEEEecCCCceeecCccccccC----CCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccc
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSSTAKTL----VRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLT  273 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l----~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~  273 (311)
                      ..+++|+.|++++|..+++ .....+..+    ++|++|+|++|..+++-...       ....+++|++|.+.+|+.++
T Consensus        82 ~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-------~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGII-------ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-------HGGGCTTCCEEEEESCTTCC
T ss_pred             cCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-------HHhcCCCCCEEECCCCCCCC
Confidence            3577888888888877887 444445443    47888888888876653211       12457888888888888776


Q ss_pred             ee
Q 039375          274 SF  275 (311)
Q Consensus       274 ~~  275 (311)
                      ..
T Consensus       154 d~  155 (176)
T 3e4g_A          154 EK  155 (176)
T ss_dssp             CH
T ss_pred             ch
Confidence            54

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.66  E-value=0.00017  Score=63.74  Aligned_cols=60  Identities=22%  Similarity=0.352  Sum_probs=32.5

Q ss_pred             HhccccceEEecccc-----ceeeeeccccccccccc-cccCCCCCccEEEEeecCccccccccccccCcEEEEE
Q 039375           30 SSLIRLEELCMGNCS-----VEWEVERANTERSNASL-DELMLLPWLTTLEIDVKNDSILQEGFLARKLERFKIS   98 (311)
Q Consensus        30 ~~L~~Lq~L~l~~~~-----~~~~~~~p~~~~~~~~l-~~l~~L~~L~~L~l~~~~~~~lp~~~~l~~L~~l~~~   98 (311)
                      .++++|+.|.+....     +.|.-        ...+ .-+..+++|+.|+++++....++. +.+++|+.|.+.
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~--------~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~  201 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIE--------QVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEII  201 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCB--------CCBCHHHHHTCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEE
T ss_pred             hhcchhhheeecCcchhhccccccc--------ccCHHHHHhcCCCCcEEEEeCCCCceecc-ccCCCCcEEEEe
Confidence            677888888875432     11110        0001 223456778888887653233333 335677777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.63  E-value=0.00011  Score=64.98  Aligned_cols=81  Identities=16%  Similarity=0.095  Sum_probs=52.3

Q ss_pred             cCCCCCccEEecCCCCC----C-----cccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEE
Q 039375            4 LGQVTKLRLLDLRDCFH----L-----KVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLE   74 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~----l-----~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~   74 (311)
                      +.++++|+.|.+.+...    +     ..++ .++..+++|++|++++|.-. .+            ..+. +++|++|+
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l------------~~~~-~~~L~~L~  199 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SI------------GKKP-RPNLKSLE  199 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BC------------CSCB-CTTCSEEE
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-ee------------cccc-CCCCcEEE
Confidence            45678999999976321    1     1233 34588999999999987322 23            2233 88999999


Q ss_pred             EeecCccccc-ccc---ccccCcEEEEEe
Q 039375           75 IDVKNDSILQ-EGF---LARKLERFKISI   99 (311)
Q Consensus        75 l~~~~~~~lp-~~~---~l~~L~~l~~~~   99 (311)
                      +..+++..-. ..+   .+++|+.|.+..
T Consensus       200 L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          200 IISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             EECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             EecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            9876543211 112   378899888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.46  E-value=7.3e-06  Score=72.94  Aligned_cols=63  Identities=16%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhc-----cccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSL-----IRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKND   80 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L-----~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~   80 (311)
                      +.+|++|+|++ +.++......+...     .+|++|++++|.+...-  .         ..+ ..+.+|+.|++++|.+
T Consensus        71 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~--~---------~~l~~~L~~L~~L~Ls~n~l  138 (372)
T 3un9_A           71 LSSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG--L---------RTLLPVFLRARKLGLQLNSL  138 (372)
T ss_dssp             HTTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH--H---------HHTHHHHHTEEEEECCSSCC
T ss_pred             HhhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH--H---------HHHHHHHHhccHhhcCCCCC
Confidence            35677777877 45554433223443     57777788777664110  1         111 1244677777777665


Q ss_pred             c
Q 039375           81 S   81 (311)
Q Consensus        81 ~   81 (311)
                      .
T Consensus       139 ~  139 (372)
T 3un9_A          139 G  139 (372)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.45  E-value=7.2e-05  Score=63.11  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=54.8

Q ss_pred             CCCCccEEecCCCCCCcccCh--hHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc-c
Q 039375            6 QVTKLRLLDLRDCFHLKVIAP--NVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS-I   82 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~--~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~   82 (311)
                      ++++|++|+|++ |.++.++.  ..++++++|++|++++|.+. .+.         .+..+..+ +|+.|++++|.+. .
T Consensus       168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~---------~l~~l~~l-~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          168 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELK-SER---------ELDKIKGL-KLEELWLDGNSLCDT  235 (267)
T ss_dssp             HCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGG---------GGGGGTTS-CCSEEECTTSTTGGG
T ss_pred             hCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccC-Cch---------hhhhcccC-CcceEEccCCcCccc
Confidence            578999999999 77776642  33489999999999999886 331         12444445 8999999888854 3


Q ss_pred             cccc-------c-ccccCcEEE
Q 039375           83 LQEG-------F-LARKLERFK   96 (311)
Q Consensus        83 lp~~-------~-~l~~L~~l~   96 (311)
                      +|..       + .+++|+.++
T Consensus       236 ~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          236 FRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CSSHHHHHHHHHHHCTTCCEES
T ss_pred             cCcchhHHHHHHHHCcccCeEC
Confidence            4421       1 267777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.44  E-value=0.00085  Score=59.87  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=18.6

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeec
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVY  235 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~  235 (311)
                      .+.+|+.+.+.+.  ++. .....+.++.+|+.+++.
T Consensus       295 ~~~~L~~i~l~~~--i~~-I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          295 GCSSLTEVKLLDS--VKF-IGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             TCTTCCEEEECTT--CCE-ECTTTTTTCTTCCEECCC
T ss_pred             ccccccccccccc--cce-echhhhcCCCCCCEEEeC
Confidence            3456666666432  444 333455566666666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.98  E-value=0.023  Score=50.51  Aligned_cols=39  Identities=13%  Similarity=0.205  Sum_probs=30.0

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNC   43 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~   43 (311)
                      .|.++.+|+.+.+..  .++.|+...+..+.+|+.+++..+
T Consensus        66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~  104 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS  104 (394)
T ss_dssp             TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT
T ss_pred             HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC
Confidence            356788888888875  478887766688889999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.17  E-value=0.067  Score=47.38  Aligned_cols=81  Identities=11%  Similarity=0.132  Sum_probs=43.6

Q ss_pred             ccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceecc
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCS  277 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~  277 (311)
                      ..+.+|+.+.+..  .++. .....+.++.+|+.++|.+  .++.|...       ....+.+|+++.+-.  +++.+..
T Consensus       285 ~~c~~L~~i~l~~--~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~-------aF~~C~~L~~i~ip~--sv~~I~~  350 (394)
T 4gt6_A          285 MNCPALQDIEFSS--RITE-LPESVFAGCISLKSIDIPE--GITQILDD-------AFAGCEQLERIAIPS--SVTKIPE  350 (394)
T ss_dssp             TTCTTCCEEECCT--TCCE-ECTTTTTTCTTCCEEECCT--TCCEECTT-------TTTTCTTCCEEEECT--TCCBCCG
T ss_pred             ccccccccccCCC--cccc-cCceeecCCCCcCEEEeCC--cccEehHh-------HhhCCCCCCEEEECc--ccCEEhH
Confidence            3456677776642  4555 3445666777788877763  24444221       112345566666642  2444421


Q ss_pred             CCceecCCCccEEEEe
Q 039375          278 ANYTFKFPSLEYLEVI  293 (311)
Q Consensus       278 ~~~~~~~~~L~~L~i~  293 (311)
                       ..+..|.+|+.+.+.
T Consensus       351 -~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          351 -SAFSNCTALNNIEYS  365 (394)
T ss_dssp             -GGGTTCTTCCEEEES
T ss_pred             -hHhhCCCCCCEEEEC
Confidence             123466777777664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.99  E-value=0.0016  Score=57.64  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=55.9

Q ss_pred             CCCccEEecCCCCCCccc-ChhHHHhccccceEEeccccceeeeecccccccccccccc-CCCCCccEEEEeecCccc--
Q 039375            7 VTKLRLLDLRDCFHLKVI-APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDEL-MLLPWLTTLEIDVKNDSI--   82 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~l-p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l-~~L~~L~~L~l~~~~~~~--   82 (311)
                      ..+|++|+|++ +.++.. ...++..+.+|++|++++|.+...-  .     ......+ ....+|++|++++|.+..  
T Consensus       100 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~--~-----~~L~~~L~~~~~~L~~L~Ls~n~l~~~~  171 (372)
T 3un9_A          100 RHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEA--C-----KDLRDLLLHDQCQITTLRLSNNPLTAAG  171 (372)
T ss_dssp             SSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHH--H-----HHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred             CCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHH--H-----HHHHHHHHhcCCccceeeCCCCCCChHH
Confidence            36999999999 466533 3344456789999999999875111  1     0000222 346789999999988654  


Q ss_pred             ---cccccc-cccCcEEEEE
Q 039375           83 ---LQEGFL-ARKLERFKIS   98 (311)
Q Consensus        83 ---lp~~~~-l~~L~~l~~~   98 (311)
                         ++..+. .++|+.++++
T Consensus       172 ~~~l~~~L~~~~~L~~L~Ls  191 (372)
T 3un9_A          172 VAVLMEGLAGNTSVTHLSLL  191 (372)
T ss_dssp             HHHHHHHHHTCSSCCEEECT
T ss_pred             HHHHHHHHhcCCCcCEEeCC
Confidence               333332 6789998875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.76  E-value=0.0034  Score=52.77  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=45.5

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhcc--ccceEEeccccceeeeeccccccccccccccCCCCCccEEEE
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLI--RLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEI   75 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~--~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l   75 (311)
                      ++.+++|++|+|++ |.++.+.. + ..+.  +|++|++++|++...+  |..  .+....-+..+++|+.||-
T Consensus       192 ~~~l~~L~~L~Ls~-N~i~~~~~-l-~~l~~l~L~~L~L~~Npl~~~~--~~~--~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          192 VQKAPNLKILNLSG-NELKSERE-L-DKIKGLKLEELWLDGNSLCDTF--RDQ--STYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHSTTCCEEECTT-SCCCSGGG-G-GGGTTSCCSEEECTTSTTGGGC--SSH--HHHHHHHHHHCTTCCEESS
T ss_pred             HhhCCCCCEEECCC-CccCCchh-h-hhcccCCcceEEccCCcCcccc--Ccc--hhHHHHHHHHCcccCeECC
Confidence            45799999999999 88887733 3 6776  9999999999986444  200  0111133567888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.55  E-value=0.0067  Score=47.93  Aligned_cols=86  Identities=15%  Similarity=0.143  Sum_probs=51.9

Q ss_pred             cCCCCCccEEecCCCCCCccc-----ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeec
Q 039375            4 LGQVTKLRLLDLRDCFHLKVI-----APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVK   78 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~l-----p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~   78 (311)
                      +...++|++|+|++|..++.-     ...+ ....+|++|++++|.+. .- |     .....+.+...++|++|+++.|
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~-~~-g-----~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSN-DP-V-----AFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCC-HH-H-----HHHHHHHHHHCSSCCEEECCSS
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCC-hH-H-----HHHHHHHHHhCCCcCEEECcCC
Confidence            345678888888885366532     2232 55677888888888764 10 0     0111134455577888888877


Q ss_pred             Cccc-----cccccc-cccCcEEEE
Q 039375           79 NDSI-----LQEGFL-ARKLERFKI   97 (311)
Q Consensus        79 ~~~~-----lp~~~~-l~~L~~l~~   97 (311)
                      .++.     +...+. .+.|+.+++
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEe
Confidence            7554     333332 567888877

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.52  E-value=0.006  Score=48.23  Aligned_cols=62  Identities=16%  Similarity=0.176  Sum_probs=34.5

Q ss_pred             HhccccceEEeccc-cceeeeeccccccccccccccCCCCCccEEEEeecCccc-----cccccc-cccCcEEEEE
Q 039375           30 SSLIRLEELCMGNC-SVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI-----LQEGFL-ARKLERFKIS   98 (311)
Q Consensus        30 ~~L~~Lq~L~l~~~-~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-----lp~~~~-l~~L~~l~~~   98 (311)
                      ...++|++|++++| .+..+       +.....+.+...++|++|+++.|.+..     +...+. .+.|+.++++
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~-------g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~  101 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVP-------TLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE  101 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHH-------HHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             hcCCCCCEEEecCCCCCCHH-------HHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence            55667778888777 65310       011111445556777777777766543     222222 4567777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.33  E-value=0.01  Score=43.99  Aligned_cols=53  Identities=19%  Similarity=0.232  Sum_probs=28.0

Q ss_pred             EEecCCCCCCc--ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375           12 LLDLRDCFHLK--VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus        12 ~L~L~~c~~l~--~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      +++-++ +.++  .+|.++ .  .+|++|++++|.+. .+. +         ..+..+++|+.|++.+|.
T Consensus        12 ~v~Cs~-~~L~~~~vP~~l-p--~~l~~L~Ls~N~l~-~l~-~---------~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAF-P--VDTTELVLTGNNLT-ALP-P---------GLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCC-C--TTCSEEECTTSCCS-SCC-T---------TTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC-CCCccccCCCCC-C--cCCCEEECCCCcCC-ccC-h---------hhhhhccccCEEEecCCC
Confidence            445555 4555  555433 2  24666666666665 442 1         334455666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.07  E-value=2.5  Score=37.01  Aligned_cols=38  Identities=11%  Similarity=0.230  Sum_probs=28.9

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNC   43 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~   43 (311)
                      +..+.+|+.+.+..  .+..++...+..+.+|+.+.+..+
T Consensus       133 F~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          133 FHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhcccccccccc--eeeeecccceecccccccccccce
Confidence            55678888888865  456777666688889999998764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.39  E-value=0.083  Score=38.97  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=28.0

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSV   45 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~   45 (311)
                      +|++|+|++ |.|+.+|.+++..+.+|++|+|.+|+.
T Consensus        32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            678888888 778888777667788888888887754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=85.60  E-value=2.4  Score=36.83  Aligned_cols=80  Identities=11%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      +....+|+.+.+..  .+..++...+..+.+|+.+.+..+ +. .+. .         ..+..+.+|+.+.+.. ++..+
T Consensus       213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~-~---------~aF~~~~~l~~i~l~~-~i~~i  277 (379)
T 4h09_A          213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN-VT-SIG-S---------FLLQNCTALKTLNFYA-KVKTV  277 (379)
T ss_dssp             TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT-CC-EEC-T---------TTTTTCTTCCEEEECC-CCSEE
T ss_pred             cccccccceeeecc--ceeEEccccccCCccceEEEcCCC-cc-EeC-c---------cccceeehhccccccc-cceec
Confidence            34455666666654  345555544466677777777554 22 231 1         3344455566665532 24444


Q ss_pred             ccccc--cccCcEEEEE
Q 039375           84 QEGFL--ARKLERFKIS   98 (311)
Q Consensus        84 p~~~~--l~~L~~l~~~   98 (311)
                      +....  +.+|+.+.+.
T Consensus       278 ~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          278 PYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             CTTTTTTCTTCCEEEEC
T ss_pred             ccccccccccccccccc
Confidence            44332  5566665553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.72  E-value=1.5  Score=38.12  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=72.0

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSIL   83 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~l   83 (311)
                      +....+|+.+.+..  .++.++...+..+.+|+.+.+... +. .+. .         ..+..+.+|+.+.+..+.+..+
T Consensus       236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~-~---------~aF~~c~~L~~i~l~~~~i~~I  301 (379)
T 4h09_A          236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK-VK-TVP-Y---------LLCSGCSNLTKVVMDNSAIETL  301 (379)
T ss_dssp             TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC-CS-EEC-T---------TTTTTCTTCCEEEECCTTCCEE
T ss_pred             ccCCccceEEEcCC--CccEeCccccceeehhcccccccc-ce-ecc-c---------ccccccccccccccccccccee
Confidence            45677888888876  367777666688889999998654 32 331 1         4556788999999987778888


Q ss_pred             ccccc--cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeE
Q 039375           84 QEGFL--ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDI  142 (311)
Q Consensus        84 p~~~~--l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L  142 (311)
                      +....  +.+|+.+.+. .....++.   . .+          .+.++|+.+.+..+++.+
T Consensus       302 ~~~aF~~c~~L~~i~lp-~~l~~I~~---~-aF----------~~C~~L~~i~ip~~v~~I  347 (379)
T 4h09_A          302 EPRVFMDCVKLSSVTLP-TALKTIQV---Y-AF----------KNCKALSTISYPKSITLI  347 (379)
T ss_dssp             CTTTTTTCTTCCEEECC-TTCCEECT---T-TT----------TTCTTCCCCCCCTTCCEE
T ss_pred             hhhhhcCCCCCCEEEcC-ccccEEHH---H-Hh----------hCCCCCCEEEECCccCEE
Confidence            77654  6788887764 11111110   0 11          455677777776655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.63
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.6
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.54
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.44
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.43
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.39
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.31
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.3
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.2
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.1
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.05
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.01
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.88
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.75
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.71
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.6
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.03
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	92.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	89.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	83.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	80.21

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=1.1e-15  Score=131.53  Aligned_cols=77  Identities=23%  Similarity=0.227  Sum_probs=50.4

Q ss_pred             CccEEecCCCCCCc---ccChhHHHhccccceEEecc-ccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            9 KLRLLDLRDCFHLK---VIAPNVISSLIRLEELCMGN-CSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         9 ~L~~L~L~~c~~l~---~lp~~i~~~L~~Lq~L~l~~-~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      +++.|+|+++ .+.   .+|+++ ++|++||+|++++ |.+.+.+  |         .+++.|++|++|++++|.+..++
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~i--P---------~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPI--P---------PAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGG-GGCTTCSEEEEEEETTEESCC--C---------GGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EEEEEECCCC-CCCCCCCCChHH-hcCcccccccccccccccccc--c---------cccccccccchhhhccccccccc
Confidence            5777777773 443   467776 7777777777775 4565566  6         77777777777777777765544


Q ss_pred             ccc-c-cccCcEEEEE
Q 039375           85 EGF-L-ARKLERFKIS   98 (311)
Q Consensus        85 ~~~-~-l~~L~~l~~~   98 (311)
                      ... . +.+|+.+++.
T Consensus       118 ~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             CGGGGGCTTCCEEECC
T ss_pred             cccccchhhhcccccc
Confidence            432 2 5666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.2e-14  Score=124.30  Aligned_cols=239  Identities=13%  Similarity=0.076  Sum_probs=141.4

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGF   87 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~   87 (311)
                      +++++|+|++ +.|+++|++.+.++.+|++|++++|.+. .+. |         ..+..+++|++|++++|.++.+|..+
T Consensus        31 ~~l~~L~Ls~-N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~-~---------~~f~~l~~L~~L~l~~n~l~~l~~~~   98 (305)
T d1xkua_          31 PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKIS-KIS-P---------GAFAPLVKLERLYLSKNQLKELPEKM   98 (305)
T ss_dssp             TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCC-CBC-T---------TTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred             CCCCEEECcC-CcCCCcChhHhhcccccccccccccccc-ccc-h---------hhhhCCCccCEecccCCccCcCccch
Confidence            6899999999 7899998754599999999999999987 442 4         67889999999999999999888765


Q ss_pred             ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc-ccccccce
Q 039375           88 LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ-SRITLTVS  166 (311)
Q Consensus        88 ~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~-~~~~~L~~  166 (311)
                      . ..+..+....+..   ..++.. .+          .....         ...+................ ..+++|+.
T Consensus        99 ~-~~l~~L~~~~n~l---~~l~~~-~~----------~~~~~---------~~~l~~~~n~~~~~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          99 P-KTLQELRVHENEI---TKVRKS-VF----------NGLNQ---------MIVVELGTNPLKSSGIENGAFQGMKKLSY  154 (305)
T ss_dssp             C-TTCCEEECCSSCC---CBBCHH-HH----------TTCTT---------CCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             h-hhhhhhhccccch---hhhhhh-hh----------hcccc---------ccccccccccccccCCCccccccccccCc
Confidence            4 4566665432211   111100 00          00000         11111111100000000000 33444555


Q ss_pred             EEEec-eEecccccccCcccccccEEeC-------CCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          167 LFIRR-GIFNGRMLRETFEEVGNDKILL-------PSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       167 L~l~~-~~~~~~~~~~~~~~l~~L~~~~-------~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      +++.+ .+..++..  ....+..+...+       +.....++.++.|.+++| ++++ ..+..+.++++|++|++++|.
T Consensus       155 l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~-~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         155 IRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISA-VDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             EECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCE-ECTTTGGGSTTCCEEECCSSC
T ss_pred             cccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccc-cccccccccccceeeeccccc
Confidence            55443 11111110  111223332211       233455678889999988 8887 455777888999999999874


Q ss_pred             CceEEeccCCcccccccccccccceeecccccccceeccCC-----ceecCCCccEEEEecCC
Q 039375          239 AMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSAN-----YTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~-----~~~~~~~L~~L~i~~c~  296 (311)
                       +..+.        .....+++|++|.++++ +++.+....     .....++|+.|.+.+++
T Consensus       231 -L~~lp--------~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         231 -LVKVP--------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             -CSSCC--------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             -ccccc--------cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence             44442        22356888999999886 476663211     12345788899998876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=5.5e-14  Score=123.58  Aligned_cols=65  Identities=20%  Similarity=0.316  Sum_probs=37.7

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      +++.|++|++|++++ +.|+.+|+  +++|++|++|++++|.+. .+            ..++.+++|+.|+++.+....
T Consensus        61 gl~~L~nL~~L~Ls~-N~l~~l~~--l~~L~~L~~L~L~~n~i~-~i------------~~l~~l~~L~~L~~~~~~~~~  124 (384)
T d2omza2          61 GVEYLNNLTQINFSN-NQLTDITP--LKNLTKLVDILMNNNQIA-DI------------TPLANLTNLTGLTLFNNQITD  124 (384)
T ss_dssp             TGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC-CC------------GGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccCCCCCEEeCcC-CcCCCCcc--ccCCcccccccccccccc-cc------------ccccccccccccccccccccc
Confidence            345566666666666 45666654  366666666666666654 33            345566666666665554443


Q ss_pred             c
Q 039375           83 L   83 (311)
Q Consensus        83 l   83 (311)
                      +
T Consensus       125 ~  125 (384)
T d2omza2         125 I  125 (384)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.4e-14  Score=118.54  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=20.4

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCc
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCR  238 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~  238 (311)
                      .+++++.+++++| +++. .++..+..+++|++|++++|.
T Consensus       146 ~l~~l~~l~l~~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         146 PTPKLEKLSLANN-NLTE-LPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             TCTTCCEEECTTS-CCSC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccchhcccccc-cccc-cCccccccccccceeecccCC
Confidence            3455555555555 5554 334445555566666665543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.48  E-value=1.4e-13  Score=118.05  Aligned_cols=86  Identities=21%  Similarity=0.283  Sum_probs=73.1

Q ss_pred             CCccCCCCCccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecC
Q 039375            1 PKALGQVTKLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKN   79 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~   79 (311)
                      |.++++|++|++|+|++|+.+. .+|+++ ++|++||+|++++|.+.+..  |         ..+..+.+|+.++++.|.
T Consensus        69 p~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~--~---------~~~~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_          69 PSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAI--P---------DFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEEC--C---------GGGGGCTTCCEEECCSSE
T ss_pred             ChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccc--c---------ccccchhhhccccccccc
Confidence            6789999999999999877766 899998 99999999999999998544  5         667889999999998876


Q ss_pred             -ccccccccc-cccCcEEEEE
Q 039375           80 -DSILQEGFL-ARKLERFKIS   98 (311)
Q Consensus        80 -~~~lp~~~~-l~~L~~l~~~   98 (311)
                       ...+|..+. +++|+.+.++
T Consensus       137 ~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_         137 LSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             EESCCCGGGGGCTTCCEEECC
T ss_pred             ccccCchhhccCcccceeecc
Confidence             556777775 8889888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=3.7e-13  Score=110.00  Aligned_cols=188  Identities=13%  Similarity=0.126  Sum_probs=104.4

Q ss_pred             CCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            5 GQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      ..|.+|++|++.+ +.|+.++ ++ +++++|++|++++|.+. .+            ..+..+++|+.++++.+..+.++
T Consensus        38 ~~l~~L~~L~l~~-~~i~~l~-~l-~~l~~L~~L~ls~n~i~-~~------------~~l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          38 ADLDGITTLSAFG-TGVTTIE-GV-QYLNNLIGLELKDNQIT-DL------------APLKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HHHHTCCEEECTT-SCCCCCT-TG-GGCTTCCEEECCSSCCC-CC------------GGGTTCCSCCEEECCSCCCSCCG
T ss_pred             HHcCCcCEEECCC-CCCCcch-hH-hcCCCCcEeecCCceee-cc------------ccccccccccccccccccccccc
Confidence            3466777777777 4667664 34 77777777777777665 33            44667777777777766666655


Q ss_pred             cccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccccccc
Q 039375           85 EGFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLT  164 (311)
Q Consensus        85 ~~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L  164 (311)
                      ....+++|+.+.+....                                               ......+   ...+.+
T Consensus       102 ~l~~l~~L~~l~l~~~~-----------------------------------------------~~~~~~~---~~~~~~  131 (227)
T d1h6ua2         102 AIAGLQSIKTLDLTSTQ-----------------------------------------------ITDVTPL---AGLSNL  131 (227)
T ss_dssp             GGTTCTTCCEEECTTSC-----------------------------------------------CCCCGGG---TTCTTC
T ss_pred             ccccccccccccccccc-----------------------------------------------ccccchh---ccccch
Confidence            43345666655542110                                               0000000   222334


Q ss_pred             ceEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEE
Q 039375          165 VSLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV  243 (311)
Q Consensus       165 ~~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~  243 (311)
                      ..+.+.. .+..                  .......++|+.|.+.+| .+++.   ..++++++|+.|++++| .++++
T Consensus       132 ~~l~~~~~~~~~------------------~~~~~~~~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~Ls~n-~l~~l  188 (227)
T d1h6ua2         132 QVLYLDLNQITN------------------ISPLAGLTNLQYLSIGNA-QVSDL---TPLANLSKLTTLKADDN-KISDI  188 (227)
T ss_dssp             CEEECCSSCCCC------------------CGGGGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCC
T ss_pred             hhhhchhhhhch------------------hhhhcccccccccccccc-ccccc---hhhcccccceecccCCC-ccCCC
Confidence            4444332 0000                  001234566777777777 55542   23566777777777765 34443


Q ss_pred             eccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEec
Q 039375          244 VINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIG  294 (311)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~  294 (311)
                      ..         ...+++|++|.++++ +++++.+   ...+++|++|++++
T Consensus       189 ~~---------l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 SP---------LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             GG---------GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred             hh---------hcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence            21         235677777777776 4666632   34677777777753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.4e-13  Score=113.01  Aligned_cols=197  Identities=15%  Similarity=0.099  Sum_probs=138.5

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE   85 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~   85 (311)
                      +...+...+.++ +.++.+|+++ .  ++|++|++++|.+. .+. +         ..+..+++|+.|++++|.+..+|.
T Consensus         8 ~~~~~~~v~C~~-~~L~~iP~~l-p--~~l~~L~Ls~N~i~-~l~-~---------~~f~~l~~L~~L~L~~N~l~~l~~   72 (266)
T d1p9ag_           8 KVASHLEVNCDK-RNLTALPPDL-P--KDTTILHLSENLLY-TFS-L---------ATLMPYTRLTQLNLDRAELTKLQV   72 (266)
T ss_dssp             CSTTCCEEECTT-SCCSSCCSCC-C--TTCCEEECTTSCCS-EEE-G---------GGGTTCTTCCEEECTTSCCCEEEC
T ss_pred             ccCCCeEEEccC-CCCCeeCcCc-C--cCCCEEECcCCcCC-CcC-H---------HHhhcccccccccccccccccccc
Confidence            455666678888 7889999876 5  47999999999987 553 3         567889999999999998888876


Q ss_pred             ccccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccc
Q 039375           86 GFLARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTV  165 (311)
Q Consensus        86 ~~~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~  165 (311)
                      ...+++|+.++++.+.  +..                                           ....    ...+++|+
T Consensus        73 ~~~l~~L~~L~Ls~N~--l~~-------------------------------------------~~~~----~~~l~~L~  103 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQ--LQS-------------------------------------------LPLL----GQTLPALT  103 (266)
T ss_dssp             CSCCTTCCEEECCSSC--CSS-------------------------------------------CCCC----TTTCTTCC
T ss_pred             cccccccccccccccc--ccc-------------------------------------------cccc----cccccccc
Confidence            5567888888765221  000                                           0000    04556777


Q ss_pred             eEEEec-eEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEe
Q 039375          166 SLFIRR-GIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVV  244 (311)
Q Consensus       166 ~L~l~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~  244 (311)
                      .|++++ .+....                +.....+.+++.|.+.++ .++. .++..+..+++|+.+++++|. +..+.
T Consensus       104 ~L~l~~~~~~~~~----------------~~~~~~l~~l~~L~l~~n-~l~~-l~~~~~~~l~~l~~l~l~~N~-l~~~~  164 (266)
T d1p9ag_         104 VLDVSFNRLTSLP----------------LGALRGLGELQELYLKGN-ELKT-LPPGLLTPTPKLEKLSLANNN-LTELP  164 (266)
T ss_dssp             EEECCSSCCCCCC----------------SSTTTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECTTSC-CSCCC
T ss_pred             cccccccccceee----------------cccccccccccccccccc-ccce-eccccccccccchhccccccc-ccccC
Confidence            777765 111110                111345778999999999 8887 566777889999999999875 44442


Q ss_pred             ccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          245 INDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      .       .....+++|++|+++++. ++.+.  .....+++|++|.+.+.
T Consensus       165 ~-------~~~~~l~~L~~L~Ls~N~-L~~lp--~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         165 A-------GLLNGLENLDTLLLQENS-LYTIP--KGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             T-------TTTTTCTTCCEEECCSSC-CCCCC--TTTTTTCCCSEEECCSC
T ss_pred             c-------cccccccccceeecccCC-CcccC--hhHCCCCCCCEEEecCC
Confidence            2       123568999999999874 88884  35567899999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=1.3e-12  Score=114.59  Aligned_cols=77  Identities=14%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE   85 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~   85 (311)
                      .+.+|++|++++ +.|+.+. ++ +.|++|++|++++|.++ .+            ..++.+++|++|++++|.+..++.
T Consensus        42 ~l~~l~~L~l~~-~~I~~l~-gl-~~L~nL~~L~Ls~N~l~-~l------------~~l~~L~~L~~L~L~~n~i~~i~~  105 (384)
T d2omza2          42 DLDQVTTLQADR-LGIKSID-GV-EYLNNLTQINFSNNQLT-DI------------TPLKNLTKLVDILMNNNQIADITP  105 (384)
T ss_dssp             HHTTCCEEECCS-SCCCCCT-TG-GGCTTCCEEECCSSCCC-CC------------GGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             HhCCCCEEECCC-CCCCCcc-cc-ccCCCCCEEeCcCCcCC-CC------------ccccCCcccccccccccccccccc
Confidence            577999999999 6888885 55 99999999999999987 66            558899999999999999888876


Q ss_pred             ccccccCcEEEEE
Q 039375           86 GFLARKLERFKIS   98 (311)
Q Consensus        86 ~~~l~~L~~l~~~   98 (311)
                      ...+++|+.+.+.
T Consensus       106 l~~l~~L~~L~~~  118 (384)
T d2omza2         106 LANLTNLTGLTLF  118 (384)
T ss_dssp             GTTCTTCCEEECC
T ss_pred             ccccccccccccc
Confidence            5458888888765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=2.4e-12  Score=109.71  Aligned_cols=238  Identities=11%  Similarity=0.100  Sum_probs=135.0

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .|.++++|++|++++ +.+..+++..++++.+|++|++++|.++ .+  |         ..  ....++.|+...+....
T Consensus        50 ~f~~l~~L~~L~l~~-n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l--~---------~~--~~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          50 DFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLK-EL--P---------EK--MPKTLQELRVHENEITK  114 (305)
T ss_dssp             TTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCS-BC--C---------SS--CCTTCCEEECCSSCCCB
T ss_pred             Hhhcccccccccccc-ccccccchhhhhCCCccCEecccCCccC-cC--c---------cc--hhhhhhhhhccccchhh
Confidence            588999999999999 5777776554599999999999999987 66  4         33  34578888888888877


Q ss_pred             cccccc--cccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccccc
Q 039375           83 LQEGFL--ARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSR  160 (311)
Q Consensus        83 lp~~~~--l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~  160 (311)
                      ++....  ...+..+.............+.  .+          ..++.++.+.+..+          ++..+..   ..
T Consensus       115 l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~--~~----------~~l~~L~~l~l~~n----------~l~~l~~---~~  169 (305)
T d1xkua_         115 VRKSVFNGLNQMIVVELGTNPLKSSGIENG--AF----------QGMKKLSYIRIADT----------NITTIPQ---GL  169 (305)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCCGGGBCTT--GG----------GGCTTCCEEECCSS----------CCCSCCS---SC
T ss_pred             hhhhhhhccccccccccccccccccCCCcc--cc----------ccccccCccccccC----------CccccCc---cc
Confidence            776543  4445554433211111111000  01          22333333333221          1111100   22


Q ss_pred             ccccceEEEec-eEecc-cccccCcccccccEEe-------CCCCcccccCccEEEEecCCCceeecCccccccCCCCCE
Q 039375          161 ITLTVSLFIRR-GIFNG-RMLRETFEEVGNDKIL-------LPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVT  231 (311)
Q Consensus       161 ~~~L~~L~l~~-~~~~~-~~~~~~~~~l~~L~~~-------~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~  231 (311)
                      ++++++|++.+ ..... .........+..+..+       .+.+...+++|+.|++++| +++.+  +..+..+++|++
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l--p~~l~~l~~L~~  246 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV--PGGLADHKYIQV  246 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC--CTTTTTCSSCCE
T ss_pred             CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccccc--ccccccccCCCE
Confidence            44556665544 00000 0000000112222211       1445677899999999999 88874  456888999999


Q ss_pred             EeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCcc
Q 039375          232 VQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLE  288 (311)
Q Consensus       232 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~  288 (311)
                      |++++|. ++.+....- .........+.|+.+.+.+++ ++.+  ......|+.+.
T Consensus       247 L~Ls~N~-i~~i~~~~f-~~~~~~~~~~~L~~L~L~~N~-~~~~--~~~~~~f~~~~  298 (305)
T d1xkua_         247 VYLHNNN-ISAIGSNDF-CPPGYNTKKASYSGVSLFSNP-VQYW--EIQPSTFRCVY  298 (305)
T ss_dssp             EECCSSC-CCCCCTTSS-SCSSCCTTSCCCSEEECCSSS-SCGG--GSCGGGGTTCC
T ss_pred             EECCCCc-cCccChhhc-cCcchhcccCCCCEEECCCCc-CccC--cCCHhHhcccc
Confidence            9999874 666522110 011112346779999999986 3333  22344565554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.2e-12  Score=105.72  Aligned_cols=77  Identities=14%  Similarity=0.156  Sum_probs=56.6

Q ss_pred             CCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcccccc
Q 039375            6 QVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQE   85 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~   85 (311)
                      .|.+|++|++++ +.++.++. + ..+++|++|++++|.+. .+            ..++.+++|+.|+++.|.+..+|.
T Consensus        44 ~L~~L~~L~l~~-~~i~~l~~-l-~~l~~L~~L~L~~n~i~-~l------------~~~~~l~~L~~L~l~~n~i~~l~~  107 (210)
T d1h6ta2          44 ELNSIDQIIANN-SDIKSVQG-I-QYLPNVTKLFLNGNKLT-DI------------KPLANLKNLGWLFLDENKVKDLSS  107 (210)
T ss_dssp             HHHTCCEEECTT-SCCCCCTT-G-GGCTTCCEEECCSSCCC-CC------------GGGTTCTTCCEEECCSSCCCCGGG
T ss_pred             HhcCccEEECcC-CCCCCchh-H-hhCCCCCEEeCCCcccc-Cc------------cccccCcccccccccccccccccc
Confidence            466788888888 57777764 4 88888888888888776 44            456778888888888887777775


Q ss_pred             ccccccCcEEEEE
Q 039375           86 GFLARKLERFKIS   98 (311)
Q Consensus        86 ~~~l~~L~~l~~~   98 (311)
                      ...+++|+.+.+.
T Consensus       108 l~~l~~L~~L~l~  120 (210)
T d1h6ta2         108 LKDLKKLKSLSLE  120 (210)
T ss_dssp             GTTCTTCCEEECT
T ss_pred             ccccccccccccc
Confidence            4446777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=3.6e-12  Score=101.89  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=28.9

Q ss_pred             CCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccc
Q 039375            7 VTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQ   84 (311)
Q Consensus         7 L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp   84 (311)
                      +.++++|++++ +.++.++. + ..+++|++|++++|.+. .+            ..++.+++|++|+++.+....++
T Consensus        39 l~~l~~L~l~~-~~i~~l~~-l-~~l~nL~~L~Ls~N~l~-~~------------~~l~~l~~L~~L~l~~n~~~~~~  100 (199)
T d2omxa2          39 LDQVTTLQADR-LGIKSIDG-V-EYLNNLTQINFSNNQLT-DI------------TPLKNLTKLVDILMNNNQIADIT  100 (199)
T ss_dssp             HTTCCEEECTT-SCCCCCTT-G-GGCTTCCEEECCSSCCC-CC------------GGGTTCTTCCEEECCSSCCCCCG
T ss_pred             hcCCCEEECCC-CCCCCccc-c-ccCCCcCcCcccccccc-Cc------------ccccCCccccccccccccccccc
Confidence            44455555555 34444432 2 45555555555555443 22            23444555555555444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=3.5e-12  Score=104.09  Aligned_cols=190  Identities=13%  Similarity=0.092  Sum_probs=126.4

Q ss_pred             cEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccccc
Q 039375           11 RLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLAR   90 (311)
Q Consensus        11 ~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~l~   90 (311)
                      ..+++.. ..+..+..  ...|.+|++|++.+|.+. .+            +.+..+++|++|+++.|.+..++..-.++
T Consensus        22 ~~~~l~~-~~~~d~~~--~~~l~~L~~L~l~~~~i~-~l------------~~l~~l~~L~~L~ls~n~i~~~~~l~~l~   85 (227)
T d1h6ua2          22 IKIAAGK-SNVTDTVT--QADLDGITTLSAFGTGVT-TI------------EGVQYLNNLIGLELKDNQITDLAPLKNLT   85 (227)
T ss_dssp             HHHHTTC-SSTTSEEC--HHHHHTCCEEECTTSCCC-CC------------TTGGGCTTCCEEECCSSCCCCCGGGTTCC
T ss_pred             HHHHhCC-CCcCCcCC--HHHcCCcCEEECCCCCCC-cc------------hhHhcCCCCcEeecCCceeeccccccccc
Confidence            3345555 55555433  378999999999999887 56            66888999999999998877776543467


Q ss_pred             cCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceecccccccccccceEEEe
Q 039375           91 KLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQSRITLTVSLFIR  170 (311)
Q Consensus        91 ~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  170 (311)
                      +|+.+.+..+.                         ++                    .+..+     ..+++|+.+.++
T Consensus        86 ~l~~l~~~~n~-------------------------~~--------------------~i~~l-----~~l~~L~~l~l~  115 (227)
T d1h6ua2          86 KITELELSGNP-------------------------LK--------------------NVSAI-----AGLQSIKTLDLT  115 (227)
T ss_dssp             SCCEEECCSCC-------------------------CS--------------------CCGGG-----TTCTTCCEEECT
T ss_pred             ccccccccccc-------------------------cc--------------------ccccc-----cccccccccccc
Confidence            77766553111                         00                    01111     456677777775


Q ss_pred             ceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcc
Q 039375          171 RGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEG  250 (311)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~  250 (311)
                      +.  ...               +.......+.+..+.+.++ .+...   ..+..+++|+.|++.+|.. ..+.      
T Consensus       116 ~~--~~~---------------~~~~~~~~~~~~~l~~~~~-~~~~~---~~~~~~~~L~~L~l~~n~~-~~~~------  167 (227)
T d1h6ua2         116 ST--QIT---------------DVTPLAGLSNLQVLYLDLN-QITNI---SPLAGLTNLQYLSIGNAQV-SDLT------  167 (227)
T ss_dssp             TS--CCC---------------CCGGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCCEEECCSSCC-CCCG------
T ss_pred             cc--ccc---------------ccchhccccchhhhhchhh-hhchh---hhhcccccccccccccccc-ccch------
Confidence            51  000               0011334678888998888 55542   3467789999999997753 3321      


Q ss_pred             cccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCeecC
Q 039375          251 VDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFT  302 (311)
Q Consensus       251 ~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~  302 (311)
                         ....+++|++|++.++ +++++..   ...+++|++|++++| +++.++
T Consensus       168 ---~l~~l~~L~~L~Ls~n-~l~~l~~---l~~l~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         168 ---PLANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             ---GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG
T ss_pred             ---hhcccccceecccCCC-ccCCChh---hcCCCCCCEEECcCC-cCCCCc
Confidence               1356899999999987 5777632   457899999999998 577554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.4e-12  Score=105.62  Aligned_cols=68  Identities=12%  Similarity=0.106  Sum_probs=39.5

Q ss_pred             ecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc--ccc
Q 039375           14 DLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL--ARK   91 (311)
Q Consensus        14 ~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~--l~~   91 (311)
                      +.++ ..++.+|..+ .  .++|+|++++|+++ .++ +         ..+..+++|++|+++++.+..++....  +..
T Consensus        17 ~c~~-~~L~~iP~~i-p--~~~~~L~Ls~N~i~-~i~-~---------~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~   81 (284)
T d1ozna_          17 SCPQ-QGLQAVPVGI-P--AASQRIFLHGNRIS-HVP-A---------ASFRACRNLTILWLHSNVLARIDAAAFTGLAL   81 (284)
T ss_dssp             ECCS-SCCSSCCTTC-C--TTCSEEECTTSCCC-EEC-T---------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             EcCC-CCCCccCCCC-C--CCCCEEECcCCcCC-CCC-H---------HHhhcccccccccccccccccccccccccccc
Confidence            4444 4566666654 3  35677777777765 552 2         446666777777777666666655443  444


Q ss_pred             CcEEE
Q 039375           92 LERFK   96 (311)
Q Consensus        92 L~~l~   96 (311)
                      +..+.
T Consensus        82 ~~~l~   86 (284)
T d1ozna_          82 LEQLD   86 (284)
T ss_dssp             CCEEE
T ss_pred             ccccc
Confidence            55443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.2e-13  Score=114.31  Aligned_cols=186  Identities=14%  Similarity=0.068  Sum_probs=104.3

Q ss_pred             CCCCCccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeec-Cccc
Q 039375            5 GQVTKLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVK-NDSI   82 (311)
Q Consensus         5 ~~L~~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~-~~~~   82 (311)
                      ....+|++|++++| .+. .....++.++++|++|++++|.+....  +         ..++.+++|++|+++++ .+..
T Consensus        43 ~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~--~---------~~l~~~~~L~~L~Ls~c~~itd  110 (284)
T d2astb2          43 FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPI--V---------NTLAKNSNLVRLNLSGCSGFSE  110 (284)
T ss_dssp             CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHH--H---------HHHTTCTTCSEEECTTCBSCCH
T ss_pred             ccCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHH--H---------HHHhcCCCCcCccccccccccc
Confidence            34668888999885 443 333445588888999999888764222  3         66777888888888763 2321


Q ss_pred             --ccccc-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc-
Q 039375           83 --LQEGF-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ-  158 (311)
Q Consensus        83 --lp~~~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~-  158 (311)
                        +...+ .+++|+.++++                                               +|..++....... 
T Consensus       111 ~~l~~l~~~~~~L~~L~ls-----------------------------------------------~c~~~~~~~~~~~~  143 (284)
T d2astb2         111 FALQTLLSSCSRLDELNLS-----------------------------------------------WCFDFTEKHVQVAV  143 (284)
T ss_dssp             HHHHHHHHHCTTCCEEECC-----------------------------------------------CCTTCCHHHHHHHH
T ss_pred             cccchhhHHHHhccccccc-----------------------------------------------cccccccccchhhh
Confidence              11111 14555555543                                               3333322111110 


Q ss_pred             -ccccccceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCCCceeecCccccccCCCCCEEeeccC
Q 039375          159 -SRITLTVSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGC  237 (311)
Q Consensus       159 -~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c  237 (311)
                       ...++|+.|++.+....+.+.     .+..+       ...+++|+.|++++|..+++ .....+..+++|++|++++|
T Consensus       144 ~~~~~~L~~L~l~~~~~~i~~~-----~l~~l-------~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         144 AHVSETITQLNLSGYRKNLQKS-----DLSTL-------VRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHH-----HHHHH-------HHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTC
T ss_pred             cccccccchhhhcccccccccc-----ccccc-------ccccccccccccccccCCCc-hhhhhhcccCcCCEEECCCC
Confidence             223456666664300000000     00000       23467788888888877776 45556667788888888888


Q ss_pred             cCceEEeccCCcccccccccccccceeecccc
Q 039375          238 RAMTEVVINDKEGVDIEEIVFSKLKALILCDL  269 (311)
Q Consensus       238 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~  269 (311)
                      ..+.+...       .....+|+|++|++.+|
T Consensus       211 ~~i~~~~l-------~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         211 YDIIPETL-------LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred             CCCChHHH-------HHHhcCCCCCEEeeeCC
Confidence            76543211       11245677888888777

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-10  Score=95.46  Aligned_cols=86  Identities=13%  Similarity=0.023  Sum_probs=38.4

Q ss_pred             CccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCce
Q 039375          202 NLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYT  281 (311)
Q Consensus       202 ~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~  281 (311)
                      .++.|.+.++ +++.+ .. .....+++..+...+++.++++....       ...+++|++|++.++. ++.+..    
T Consensus       154 ~l~~L~l~~n-~l~~i-~~-~~~~~~~l~~~~~l~~n~l~~l~~~~-------f~~l~~L~~L~Ls~N~-l~~l~~----  218 (242)
T d1xwdc1         154 ESVILWLNKN-GIQEI-HN-CAFNGTQLDELNLSDNNNLEELPNDV-------FHGASGPVILDISRTR-IHSLPS----  218 (242)
T ss_dssp             SCEEEECCSS-CCCEE-CT-TTTTTCCEEEEECTTCTTCCCCCTTT-------TTTSCCCSEEECTTSC-CCCCCS----
T ss_pred             cceeeecccc-ccccc-cc-ccccchhhhccccccccccccccHHH-------hcCCCCCCEEECCCCc-CCccCH----
Confidence            4555555555 55542 21 22233444444443444444442110       1335566666665543 444421    


Q ss_pred             ecCCCccEEEEecCCCCeecC
Q 039375          282 FKFPSLEYLEVIGCPKMKTFT  302 (311)
Q Consensus       282 ~~~~~L~~L~i~~c~~l~~~~  302 (311)
                      ..|.+|.+|...++.+|+.+|
T Consensus       219 ~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         219 YGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             SSCTTCCEEESSSEESSSCSC
T ss_pred             HHHcCCcccccCcCCCCCcCC
Confidence            234455555444444555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.8e-11  Score=100.51  Aligned_cols=79  Identities=11%  Similarity=0.164  Sum_probs=57.1

Q ss_pred             CCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEe-ecCccccccc
Q 039375            8 TKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEID-VKNDSILQEG   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~-~~~~~~lp~~   86 (311)
                      .++++|+|++ +.|+.+|+..+.++.+|++|++++|.+. .+. +         .....+..++.+... .+....++..
T Consensus        32 ~~~~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~-~---------~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLA-RID-A---------AAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCC-EEC-T---------TTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCCCEEECcC-CcCCCCCHHHhhcccccccccccccccc-ccc-c---------ccccccccccccccccccccccccch
Confidence            4689999999 7899999865699999999999999987 442 3         444556677777664 3445555443


Q ss_pred             -cc-cccCcEEEEE
Q 039375           87 -FL-ARKLERFKIS   98 (311)
Q Consensus        87 -~~-l~~L~~l~~~   98 (311)
                       +. +++|+.++++
T Consensus       100 ~~~~l~~L~~L~l~  113 (284)
T d1ozna_         100 TFHGLGRLHTLHLD  113 (284)
T ss_dssp             TTTTCTTCCEEECT
T ss_pred             hhcccccCCEEecC
Confidence             32 6777777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=8.6e-11  Score=93.68  Aligned_cols=79  Identities=19%  Similarity=0.276  Sum_probs=60.5

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .+..+++|++|++++ +.++.+++ + +++++|++|++++|.+. .+            ..++.+++|+.|+++.+....
T Consensus        57 ~l~~l~nL~~L~Ls~-N~l~~~~~-l-~~l~~L~~L~l~~n~~~-~~------------~~l~~l~~L~~L~l~~~~~~~  120 (199)
T d2omxa2          57 GVEYLNNLTQINFSN-NQLTDITP-L-KNLTKLVDILMNNNQIA-DI------------TPLANLTNLTGLTLFNNQITD  120 (199)
T ss_dssp             TGGGCTTCCEEECCS-SCCCCCGG-G-TTCTTCCEEECCSSCCC-CC------------GGGTTCTTCSEEECCSSCCCC
T ss_pred             ccccCCCcCcCcccc-ccccCccc-c-cCCcccccccccccccc-cc------------ccccccccccccccccccccc
Confidence            467899999999999 68888876 4 99999999999999876 55            567889999999998766555


Q ss_pred             cccccccccCcEEEE
Q 039375           83 LQEGFLARKLERFKI   97 (311)
Q Consensus        83 lp~~~~l~~L~~l~~   97 (311)
                      ++....+++|+.+++
T Consensus       121 ~~~~~~l~~L~~L~l  135 (199)
T d2omxa2         121 IDPLKNLTNLNRLEL  135 (199)
T ss_dssp             CGGGTTCTTCSEEEC
T ss_pred             ccccchhhhhHHhhh
Confidence            433223455555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.1e-11  Score=104.53  Aligned_cols=226  Identities=14%  Similarity=0.103  Sum_probs=131.2

Q ss_pred             cEEecCCCCCCcccChhHHHhccc--cceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCcc--ccccc
Q 039375           11 RLLDLRDCFHLKVIAPNVISSLIR--LEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDS--ILQEG   86 (311)
Q Consensus        11 ~~L~L~~c~~l~~lp~~i~~~L~~--Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~--~lp~~   86 (311)
                      +.||+++ +.   +++++++++..  +..+.+..+.+....            .......+|++|+++++.+.  .++..
T Consensus         3 ~~lDLs~-~~---l~~~~l~~l~~~~~~~lrl~~~~~~~~~------------~~~~~~~~L~~LdLs~~~i~~~~l~~l   66 (284)
T d2astb2           3 QTLDLTG-KN---LHPDVTGRLLSQGVIAFRCPRSFMDQPL------------AEHFSPFRVQHMDLSNSVIEVSTLHGI   66 (284)
T ss_dssp             SEEECTT-CB---CCHHHHHHHHHTTCSEEECTTCEECSCC------------CSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             CEEECCC-CC---CCchHHHHHHhccceEeeccccccccch------------hhhccCCCCCEEECCCCccCHHHHHHH
Confidence            5789988 33   34444465543  344554443332111            23334568899999765532  23333


Q ss_pred             c-ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCceeeEEccccCCcceeccccc-cccccc
Q 039375           87 F-LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPDFTDICSMKLQAINNVEYISQ-SRITLT  164 (311)
Q Consensus        87 ~-~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~l~~L~l~~~~~~~~~~~~~~-~~~~~L  164 (311)
                      + .+++|+++.+....  ...                     ..+..+.-..+++.|.+.+|.++++...... ..+++|
T Consensus        67 ~~~c~~L~~L~L~~~~--l~~---------------------~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          67 LSQCSKLQNLSLEGLR--LSD---------------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             HTTBCCCSEEECTTCB--CCH---------------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             HHhCCCcccccccccC--CCc---------------------HHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3 27888888775221  100                     0011111112357778888888875543332 667899


Q ss_pred             ceEEEeceEecccccccCcccccccEEeCCCCcccccCccEEEEecCC-CceeecCccccccCCCCCEEeeccCcCceEE
Q 039375          165 VSLFIRRGIFNGRMLRETFEEVGNDKILLPSSSVSFRNLTKLVAVGCK-ELIHLVTSSTAKTLVRLVTVQVYGCRAMTEV  243 (311)
Q Consensus       165 ~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~l~~L~~L~l~~~~-~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~  243 (311)
                      ++|+++++ ....+.     .+...      .....++|+.|.+++|. .+++-........+++|++|++++|..+++.
T Consensus       124 ~~L~ls~c-~~~~~~-----~~~~~------~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~  191 (284)
T d2astb2         124 DELNLSWC-FDFTEK-----HVQVA------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND  191 (284)
T ss_dssp             CEEECCCC-TTCCHH-----HHHHH------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred             cccccccc-cccccc-----cchhh------hcccccccchhhhcccccccccccccccccccccccccccccccCCCch
Confidence            99998751 011000     00000      01224689999999873 3554222334567899999999999876543


Q ss_pred             eccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecC
Q 039375          244 VINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c  295 (311)
                      ..       .....+++|++|.+.+|..+..-... ....+|+|++|++.+|
T Consensus       192 ~~-------~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         192 CF-------QEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GG-------GGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             hh-------hhhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence            21       12356899999999999887654221 2356899999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.08  E-value=1.3e-09  Score=93.77  Aligned_cols=60  Identities=20%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             cCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccCCceecCCCccEEEEecCCCCeecCC
Q 039375          225 TLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSANYTFKFPSLEYLEVIGCPKMKTFTS  303 (311)
Q Consensus       225 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~  303 (311)
                      .+++|++|++++|. +.++.           ..+++|+.|.+.++ +++++..     .+++|++|++++|+ ++.+|.
T Consensus       282 ~~~~L~~L~Ls~N~-l~~lp-----------~~~~~L~~L~L~~N-~L~~l~~-----~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNNK-LIELP-----------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCC
T ss_pred             cCCCCCEEECCCCc-cCccc-----------cccCCCCEEECCCC-cCCcccc-----ccCCCCEEECcCCc-CCCCCc
Confidence            35678888888764 34431           24677888888766 4666522     35678888888875 776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.5e-09  Score=88.73  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             cEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc-ccccc--
Q 039375           11 RLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI-LQEGF--   87 (311)
Q Consensus        11 ~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-lp~~~--   87 (311)
                      ++++.++ ..++.+|+++ .  .++++|++++|.+. .+. +         ..+..+++|++|++++|.... ++...  
T Consensus        11 ~~i~c~~-~~l~~iP~~l-~--~~l~~L~Ls~n~i~-~l~-~---------~~f~~l~~L~~L~ls~n~~~~~i~~~~f~   75 (242)
T d1xwdc1          11 RVFLCQE-SKVTEIPSDL-P--RNAIELRFVLTKLR-VIQ-K---------GAFSGFGDLEKIEISQNDVLEVIEADVFS   75 (242)
T ss_dssp             SEEEEES-CSCSSCCSCS-C--SCCSEEEEESCCCC-EEC-T---------TTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred             CEEEEeC-CCCCCcCCCC-C--CCCCEEECcCCcCC-ccC-h---------hHhhccchhhhhhhccccccceeeccccc
Confidence            5666776 6677888765 2  47888888888876 552 1         346778888888888776543 33332  


Q ss_pred             ccccCcEEEEE
Q 039375           88 LARKLERFKIS   98 (311)
Q Consensus        88 ~l~~L~~l~~~   98 (311)
                      .++++..+.+.
T Consensus        76 ~l~~l~~l~~~   86 (242)
T d1xwdc1          76 NLPKLHEIRIE   86 (242)
T ss_dssp             SCTTCCEEEEE
T ss_pred             ccccccccccc
Confidence            26677777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=2.8e-10  Score=91.40  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=67.5

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .+..+++|++|++++ +.++.+++  ++.+++|++|++++|.++ .+            ..+..+++|+.|+++.+....
T Consensus        63 ~l~~l~~L~~L~L~~-n~i~~l~~--~~~l~~L~~L~l~~n~i~-~l------------~~l~~l~~L~~L~l~~~~~~~  126 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNG-NKLTDIKP--LANLKNLGWLFLDENKVK-DL------------SSLKDLKKLKSLSLEHNGISD  126 (210)
T ss_dssp             TGGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC-CG------------GGGTTCTTCCEEECTTSCCCC
T ss_pred             hHhhCCCCCEEeCCC-ccccCccc--cccCcccccccccccccc-cc------------ccccccccccccccccccccc
Confidence            467899999999999 68898886  489999999999999886 55            568889999999999888877


Q ss_pred             cccccccccCcEEEEE
Q 039375           83 LQEGFLARKLERFKIS   98 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~   98 (311)
                      ++....+++++.+.+.
T Consensus       127 ~~~l~~l~~l~~l~~~  142 (210)
T d1h6ta2         127 INGLVHLPQLESLYLG  142 (210)
T ss_dssp             CGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccc
Confidence            7765567888887764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.3e-10  Score=87.10  Aligned_cols=81  Identities=21%  Similarity=0.311  Sum_probs=70.2

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      ++.+..+||.|+|++ +.|+.+|.-. ..+.+|++|++++|.+. .+            +.+..+++|++|++++|.+..
T Consensus        13 ~~~n~~~lr~L~L~~-n~I~~i~~~~-~~l~~L~~L~Ls~N~i~-~l------------~~~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          13 QYTNAVRDRELDLRG-YKIPVIENLG-ATLDQFDAIDFSDNEIR-KL------------DGFPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             EEECTTSCEEEECTT-SCCCSCCCGG-GGTTCCSEEECCSSCCC-EE------------CCCCCCSSCCEEECCSSCCCE
T ss_pred             hccCcCcCcEEECCC-CCCCccCccc-cccccCCEEECCCCCCC-cc------------CCcccCcchhhhhcccccccC
Confidence            356778999999999 7999998644 78999999999999997 77            567889999999999999999


Q ss_pred             cccccc--cccCcEEEEE
Q 039375           83 LQEGFL--ARKLERFKIS   98 (311)
Q Consensus        83 lp~~~~--l~~L~~l~~~   98 (311)
                      ++..+.  +++|+.+++.
T Consensus        78 l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          78 IGEGLDQALPDLTELILT   95 (162)
T ss_dssp             ECSCHHHHCTTCCEEECC
T ss_pred             CCccccccccccccceec
Confidence            988653  8899999886

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=1.4e-09  Score=79.57  Aligned_cols=73  Identities=16%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             cEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccccc
Q 039375           11 RLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFLAR   90 (311)
Q Consensus        11 ~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~l~   90 (311)
                      |+|++++ +.++.++. + +++.+|++|++++|.+. .+  |         .+++.+++|+.|++++|.+..+|....++
T Consensus         1 R~L~Ls~-n~l~~l~~-l-~~l~~L~~L~ls~N~l~-~l--p---------~~~~~l~~L~~L~l~~N~i~~l~~~~~l~   65 (124)
T d1dcea3           1 RVLHLAH-KDLTVLCH-L-EQLLLVTHLDLSHNRLR-AL--P---------PALAALRCLEVLQASDNALENVDGVANLP   65 (124)
T ss_dssp             SEEECTT-SCCSSCCC-G-GGGTTCCEEECCSSCCC-CC--C---------GGGGGCTTCCEEECCSSCCCCCGGGTTCS
T ss_pred             CEEEcCC-CCCCCCcc-c-ccCCCCCEEECCCCccC-cc--h---------hhhhhhhcccccccccccccccCcccccc
Confidence            4666666 56666654 3 66666666666666665 55  4         55666666666666666666665433466


Q ss_pred             cCcEEEEE
Q 039375           91 KLERFKIS   98 (311)
Q Consensus        91 ~L~~l~~~   98 (311)
                      +|+.++++
T Consensus        66 ~L~~L~l~   73 (124)
T d1dcea3          66 RLQELLLC   73 (124)
T ss_dssp             SCCEEECC
T ss_pred             ccCeEECC
Confidence            66666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=2.7e-09  Score=78.01  Aligned_cols=81  Identities=23%  Similarity=0.274  Sum_probs=70.2

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      .++.+++|++|++++ +.++.+|+++ +.+++|++|++++|.+. .+            ++++.+++|++|++++|.+..
T Consensus        15 ~l~~l~~L~~L~ls~-N~l~~lp~~~-~~l~~L~~L~l~~N~i~-~l------------~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3          15 HLEQLLLVTHLDLSH-NRLRALPPAL-AALRCLEVLQASDNALE-NV------------DGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             CGGGGTTCCEEECCS-SCCCCCCGGG-GGCTTCCEEECCSSCCC-CC------------GGGTTCSSCCEEECCSSCCCS
T ss_pred             ccccCCCCCEEECCC-CccCcchhhh-hhhhccccccccccccc-cc------------CccccccccCeEECCCCccCC
Confidence            478899999999999 8999999887 99999999999999987 55            568899999999999999888


Q ss_pred             ccc--cc-ccccCcEEEEE
Q 039375           83 LQE--GF-LARKLERFKIS   98 (311)
Q Consensus        83 lp~--~~-~l~~L~~l~~~   98 (311)
                      ++.  .+ .+++|+.+++.
T Consensus        80 ~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECT
T ss_pred             CCCchhhcCCCCCCEEECC
Confidence            775  23 37888888775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=5.1e-09  Score=82.60  Aligned_cols=74  Identities=16%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             CccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccccc
Q 039375            9 KLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEGFL   88 (311)
Q Consensus         9 ~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~~~   88 (311)
                      ..+.++.++ +.++.||.++ .  .++++|++++|.+...+. +         ..++.+++|+.|++++|.+..++....
T Consensus         9 ~~~~v~Cs~-~~L~~iP~~l-p--~~l~~L~Ls~N~i~~~~~-~---------~~f~~l~~L~~L~L~~N~i~~~~~~~~   74 (192)
T d1w8aa_           9 EGTTVDCTG-RGLKEIPRDI-P--LHTTELLLNDNELGRISS-D---------GLFGRLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             ETTEEECTT-SCCSSCCSCC-C--TTCSEEECCSCCCCSBCC-S---------CSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEEeC-CCcCccCCCC-C--CCCCEEEeCCCCCccccc-c---------cccCCCceEeeeecccccccccccccc
Confidence            356788888 8889999876 4  589999999999863332 2         556788999999998877766655332


Q ss_pred             --cccCcEEE
Q 039375           89 --ARKLERFK   96 (311)
Q Consensus        89 --l~~L~~l~   96 (311)
                        +++|+.++
T Consensus        75 ~~~~~L~~L~   84 (192)
T d1w8aa_          75 EGASHIQELQ   84 (192)
T ss_dssp             TTCTTCCEEE
T ss_pred             ccccccceee
Confidence              44444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.75  E-value=6.7e-08  Score=82.61  Aligned_cols=71  Identities=24%  Similarity=0.100  Sum_probs=52.8

Q ss_pred             cccCccEEEEecCCCceeecCccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccceeccC
Q 039375          199 SFRNLTKLVAVGCKELIHLVTSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTSFCSA  278 (311)
Q Consensus       199 ~l~~L~~L~l~~~~~l~~l~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~  278 (311)
                      .+++|+.|++++| +++.+ +    ..+++|+.|++++|. ++++.           ..+++|++|++++++ ++++.. 
T Consensus       282 ~~~~L~~L~Ls~N-~l~~l-p----~~~~~L~~L~L~~N~-L~~l~-----------~~~~~L~~L~L~~N~-L~~lp~-  341 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIEL-P----ALPPRLERLIASFNH-LAEVP-----------ELPQNLKQLHVEYNP-LREFPD-  341 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCC-C----CCCTTCCEEECCSSC-CSCCC-----------CCCTTCCEEECCSSC-CSSCCC-
T ss_pred             cCCCCCEEECCCC-ccCcc-c----cccCCCCEEECCCCc-CCccc-----------cccCCCCEEECcCCc-CCCCCc-
Confidence            3679999999999 78873 2    247899999999775 55552           235689999999986 888732 


Q ss_pred             CceecCCCccEEEEe
Q 039375          279 NYTFKFPSLEYLEVI  293 (311)
Q Consensus       279 ~~~~~~~~L~~L~i~  293 (311)
                          ...+|++|.+.
T Consensus       342 ----~~~~L~~L~~~  352 (353)
T d1jl5a_         342 ----IPESVEDLRMN  352 (353)
T ss_dssp             ----CCTTCCEEECC
T ss_pred             ----cccccCeeECc
Confidence                34578888763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=8.9e-09  Score=78.34  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=73.6

Q ss_pred             CCccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            1 PKALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         1 P~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      |..+..+++|+.|++++++.++.++.+.+..+++|++|++++|.+. .++ |         ..+..+++|++|++++|.+
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~-~---------~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVA-P---------DAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EEC-T---------TGGGSCSCCCEEECCSSCC
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-Ccc-c---------ccccccccccceeccCCCC
Confidence            4567788999999998867899998766699999999999999998 663 4         6788899999999999999


Q ss_pred             cccccccc-cccCcEEEEE
Q 039375           81 SILQEGFL-ARKLERFKIS   98 (311)
Q Consensus        81 ~~lp~~~~-l~~L~~l~~~   98 (311)
                      ..+|..+. ..+|+.++++
T Consensus        93 ~~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          93 ESLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             SCCCSTTTCSCCCCEEECC
T ss_pred             cccChhhhccccccccccC
Confidence            99998764 5578888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.61  E-value=6.2e-10  Score=88.50  Aligned_cols=76  Identities=17%  Similarity=0.179  Sum_probs=54.5

Q ss_pred             CCccEEecCC-CCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            8 TKLRLLDLRD-CFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         8 ~~L~~L~L~~-c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      ..++.+++.+ ...++.+|.++ +.|.+|++|++++|.+. .+            +.+..+++|+.|++++|.+..+|..
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl-~~L~~L~~L~Ls~n~I~-~i------------~~l~~l~~L~~L~Ls~N~i~~i~~~   88 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIE-KI------------SSLSGMENLRILSLGRNLIKKIENL   88 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHH-HHTTTCCEEECSEEEES-CC------------CCHHHHTTCCEEECCEEEECSCSSH
T ss_pred             cccceeeeecccCchhhhhhHH-hcccccceeECcccCCC-Cc------------ccccCCccccChhhccccccccccc
Confidence            3455666764 23577778887 99999999999999886 55            5577888999999988877777654


Q ss_pred             cc-cccCcEEEE
Q 039375           87 FL-ARKLERFKI   97 (311)
Q Consensus        87 ~~-l~~L~~l~~   97 (311)
                      .. +++|+.+++
T Consensus        89 ~~~~~~L~~L~l  100 (198)
T d1m9la_          89 DAVADTLEELWI  100 (198)
T ss_dssp             HHHHHHCCEEEC
T ss_pred             cccccccccccc
Confidence            33 344555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.60  E-value=2.5e-08  Score=78.48  Aligned_cols=105  Identities=12%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             CCccEEecCCCCCCc-ccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccccccc
Q 039375            8 TKLRLLDLRDCFHLK-VIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSILQEG   86 (311)
Q Consensus         8 ~~L~~L~L~~c~~l~-~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~lp~~   86 (311)
                      .++++|+|++ +.|+ .++...++.+.+|++|++++|.+....  +         ..+..+++|+.|++++|.+..+|..
T Consensus        29 ~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~--~---------~~~~~~~~L~~L~Ls~N~l~~l~~~   96 (192)
T d1w8aa_          29 LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIE--P---------NAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--T---------TTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             CCCCEEEeCC-CCCcccccccccCCCceEeeeecccccccccc--c---------cccccccccceeeeccccccccCHH
Confidence            5788899998 6776 455555588889999999988887333  4         6777888889999988888888775


Q ss_pred             c--ccccCcEEEEEecCcccccccccccccccccccccccccccccccccccCc
Q 039375           87 F--LARKLERFKISIGNESFMASLPVTKDWFRSRSHFLINHNHERLRELKLKPD  138 (311)
Q Consensus        87 ~--~l~~L~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  138 (311)
                      .  .+++|+.++++.+..   ..+|.  ++|         ..+.+++++.+.++
T Consensus        97 ~F~~l~~L~~L~L~~N~l---~~i~~--~~f---------~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDNQI---SCVMP--GSF---------EHLNSLTSLNLASN  136 (192)
T ss_dssp             SSTTCTTCCEEECCSSCC---CEECT--TSS---------TTCTTCCEEECTTC
T ss_pred             HHhCCCcccccccCCccc---cccCH--HHh---------cCCccccccccccc
Confidence            4  388888888864331   21211  111         45677788888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.48  E-value=1.4e-09  Score=86.39  Aligned_cols=83  Identities=17%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             ccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCccc
Q 039375            3 ALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         3 ~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~   82 (311)
                      +++.|++|++|+|++ +.|+.++.  ++.+++|++|++++|.+. .+  |         .....+++|+.|++++|.+..
T Consensus        43 sl~~L~~L~~L~Ls~-n~I~~i~~--l~~l~~L~~L~Ls~N~i~-~i--~---------~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          43 TLSTLKACKHLALST-NNIEKISS--LSGMENLRILSLGRNLIK-KI--E---------NLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHHTTTCCEEECSE-EEESCCCC--HHHHTTCCEEECCEEEEC-SC--S---------SHHHHHHHCCEEECSEEECCC
T ss_pred             HHhcccccceeECcc-cCCCCccc--ccCCccccChhhcccccc-cc--c---------ccccccccccccccccccccc
Confidence            467799999999999 78999975  499999999999999886 55  3         223345679999999999888


Q ss_pred             cccccccccCcEEEEEec
Q 039375           83 LQEGFLARKLERFKISIG  100 (311)
Q Consensus        83 lp~~~~l~~L~~l~~~~~  100 (311)
                      ++....+++|+.++++.+
T Consensus       108 l~~~~~l~~L~~L~L~~N  125 (198)
T d1m9la_         108 LSGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             HHHHHHHHHSSEEEESEE
T ss_pred             cccccccccccccccccc
Confidence            865445899999988643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=8.9e-08  Score=73.09  Aligned_cols=81  Identities=19%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccc-cCCCCCccEEEEeecCccc
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDE-LMLLPWLTTLEIDVKNDSI   82 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~-l~~L~~L~~L~l~~~~~~~   82 (311)
                      +..+++|++|++++ +.|+.++. + +.+++|++|++++|.+. .+  |         .. ...+++|+.|++++|.+..
T Consensus        37 ~~~l~~L~~L~Ls~-N~i~~l~~-~-~~l~~L~~L~ls~N~i~-~l--~---------~~~~~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          37 GATLDQFDAIDFSD-NEIRKLDG-F-PLLRRLKTLLVNNNRIC-RI--G---------EGLDQALPDLTELILTNNSLVE  101 (162)
T ss_dssp             GGGTTCCSEEECCS-SCCCEECC-C-CCCSSCCEEECCSSCCC-EE--C---------SCHHHHCTTCCEEECCSCCCCC
T ss_pred             ccccccCCEEECCC-CCCCccCC-c-ccCcchhhhhccccccc-CC--C---------ccccccccccccceeccccccc
Confidence            35688999999999 78999865 4 89999999999999987 66  3         33 3578999999999999887


Q ss_pred             ccc--cc-ccccCcEEEEEe
Q 039375           83 LQE--GF-LARKLERFKISI   99 (311)
Q Consensus        83 lp~--~~-~l~~L~~l~~~~   99 (311)
                      ++.  .+ .+++|+.+.+..
T Consensus       102 ~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_         102 LGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             GGGGGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccchhhcCC
Confidence            775  23 378999998863

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.1e-06  Score=64.78  Aligned_cols=66  Identities=20%  Similarity=0.181  Sum_probs=54.9

Q ss_pred             CccCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            2 KALGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         2 ~~i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      ..|..+++|++|+|++ +.|+.++++.+..+++|++|++++|.+. .+  |         .++-...+|+.|++++|..
T Consensus        50 ~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l--~---------~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          50 RDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALE-SL--S---------WKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             GGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCS-CC--C---------STTTCSCCCCEEECCSSCC
T ss_pred             hhhccccccCcceeec-cccCCcccccccccccccceeccCCCCc-cc--C---------hhhhccccccccccCCCcc
Confidence            3578899999999999 7999997776699999999999999998 66  4         4444444799999998765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.30  E-value=2.5e-06  Score=72.90  Aligned_cols=93  Identities=17%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             ccccCccEEEEecCCCceeec---CccccccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccce
Q 039375          198 VSFRNLTKLVAVGCKELIHLV---TSSTAKTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTS  274 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~---~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~  274 (311)
                      ...++|+.|++++| .+++..   ....+...++|++|++++|..-..-...-.  ........+.|++|+++++. +..
T Consensus       212 ~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~--~~l~~~~~~~L~~L~ls~N~-i~~  287 (344)
T d2ca6a1         212 AYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV--DAFSKLENIGLQTLRLQYNE-IEL  287 (344)
T ss_dssp             GGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH--HHHHTCSSCCCCEEECCSSC-CBH
T ss_pred             cchhhhcccccccc-cccccccccccccccccccchhhhhhcCccCchhhHHHH--HHhhhccCCCCCEEECCCCc-CCh
Confidence            45678999999998 665411   123456788999999998863211100000  00001235679999998864 432


Q ss_pred             -----eccCCceecCCCccEEEEecC
Q 039375          275 -----FCSANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       275 -----~~~~~~~~~~~~L~~L~i~~c  295 (311)
                           +... .....++|++|++.++
T Consensus       288 ~~~~~l~~~-l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         288 DAVRTLKTV-IDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHHHH-HHHHCTTCCEEECTTS
T ss_pred             HHHHHHHHH-HHccCCCCCEEECCCC
Confidence                 2110 1124778999998774

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.18  E-value=5.7e-06  Score=70.55  Aligned_cols=66  Identities=17%  Similarity=0.071  Sum_probs=38.8

Q ss_pred             ccccCccEEEEecCCCceeecCccc----cc--cCCCCCEEeeccCcCceEEeccCCccccccc-ccccccceeecccc
Q 039375          198 VSFRNLTKLVAVGCKELIHLVTSST----AK--TLVRLVTVQVYGCRAMTEVVINDKEGVDIEE-IVFSKLKALILCDL  269 (311)
Q Consensus       198 ~~l~~L~~L~l~~~~~l~~l~~~~~----l~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~i~~~  269 (311)
                      ...++|+.|++++| .+++ .....    +.  ..+.|++|++++|. ++.-...   ...... ...+.|+.|+++++
T Consensus       240 ~~~~~L~~L~Ls~n-~i~~-~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~---~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         240 KSWPNLRELGLNDC-LLSA-RGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVR---TLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             GGCTTCCEEECTTC-CCCH-HHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHH---HHHHHHHHHCTTCCEEECTTS
T ss_pred             cccccchhhhhhcC-ccCc-hhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHH---HHHHHHHccCCCCCEEECCCC
Confidence            45688999999999 7765 22222    22  24679999999875 3321000   000000 24677888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=4.8e-05  Score=57.36  Aligned_cols=40  Identities=15%  Similarity=0.250  Sum_probs=23.9

Q ss_pred             CCCCccEEecCCCCCCcccCh--hHHHhccccceEEeccccce
Q 039375            6 QVTKLRLLDLRDCFHLKVIAP--NVISSLIRLEELCMGNCSVE   46 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~lp~--~i~~~L~~Lq~L~l~~~~~~   46 (311)
                      ++++|++|+|++ +.|+.+++  ..+.++++|++|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccCccc
Confidence            356666666666 55655532  22356666666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.00083  Score=58.21  Aligned_cols=36  Identities=25%  Similarity=0.228  Sum_probs=17.7

Q ss_pred             cccceeecccccccceecc---CCceecCCCccEEEEecC
Q 039375          259 SKLKALILCDLDSLTSFCS---ANYTFKFPSLEYLEVIGC  295 (311)
Q Consensus       259 ~~L~~L~i~~~~~l~~~~~---~~~~~~~~~L~~L~i~~c  295 (311)
                      +.|++|.+.+| .+.....   ......+++|++|+++++
T Consensus       369 ~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         369 SVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN  407 (460)
T ss_dssp             CCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             CCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence            44666666666 2432100   001123567777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0022  Score=47.74  Aligned_cols=66  Identities=21%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             cCCCCCccEEecCCCCCCcccChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEE
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIAPNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLE   74 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~   74 (311)
                      +..+++|++|++++ +.|+.+++-...+..+|++|++.+|++....  ...  .+....-+..+++|+.||
T Consensus        87 ~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~--~~~--~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          87 VQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTF--RDQ--STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS--SSH--HHHHHHHHTTSTTCCEET
T ss_pred             HhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCc--ccc--hhHHHHHHHHCCCCCEEC
Confidence            34689999999999 8999887722244567999999999886222  100  001112245677787775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.022  Score=48.75  Aligned_cols=89  Identities=15%  Similarity=0.047  Sum_probs=42.9

Q ss_pred             cCccEEEEecCCCceeecC---cccc-ccCCCCCEEeeccCcCceEEeccCCcccccccccccccceeecccccccce--
Q 039375          201 RNLTKLVAVGCKELIHLVT---SSTA-KTLVRLVTVQVYGCRAMTEVVINDKEGVDIEEIVFSKLKALILCDLDSLTS--  274 (311)
Q Consensus       201 ~~L~~L~l~~~~~l~~l~~---~~~l-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~--  274 (311)
                      ++|+.|+++++ ++++...   ...+ ...+.|++|++++|. +++....   .........+.|++|++++.+ +..  
T Consensus       340 ~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~---~l~~~l~~~~~L~~L~Ls~N~-i~~~g  413 (460)
T d1z7xw1         340 RFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCS---SLAATLLANHSLRELDLSNNC-LGDAG  413 (460)
T ss_dssp             SSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHH---HHHHHHHHCCCCCEEECCSSS-CCHHH
T ss_pred             cchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHH---HHHHHHhcCCCCCEEECCCCc-CCHHH
Confidence            46777777777 5554110   1112 234567778887775 3221000   000011235778888888763 332  


Q ss_pred             ---eccCCceecCCCccEEEEecCC
Q 039375          275 ---FCSANYTFKFPSLEYLEVIGCP  296 (311)
Q Consensus       275 ---~~~~~~~~~~~~L~~L~i~~c~  296 (311)
                         +... ....-.+|++|.+.++.
T Consensus       414 ~~~l~~~-l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         414 ILQLVES-VRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHH-HTSTTCCCCEEECTTCC
T ss_pred             HHHHHHH-HHhCCCccCEEECCCCC
Confidence               1000 00012367888777653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.33  E-value=0.087  Score=38.76  Aligned_cols=86  Identities=13%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             CCCCccEEecCCCCCCccc-----ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            6 QVTKLRLLDLRDCFHLKVI-----APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~l-----p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      +-++|+.|+|++++.++.-     -..+ .+..+|++|++++|.+.-.-       .....+.+...+.|+.|+++.|.+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L-~~n~~L~~L~Ls~n~l~~~~-------~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSE-------ARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHH-------HTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHH-hhCCccceeeccccccchhH-------HHHHhhhhhhcccccceeeehhhc
Confidence            4588999999986666521     1222 55677999999999764110       111123445568899999988875


Q ss_pred             cc-----cccccc-cccCcEEEEEe
Q 039375           81 SI-----LQEGFL-ARKLERFKISI   99 (311)
Q Consensus        81 ~~-----lp~~~~-l~~L~~l~~~~   99 (311)
                      ..     +...+. .+.|+.++++.
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCC
Confidence            43     222222 56788888763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.67  E-value=0.063  Score=39.57  Aligned_cols=37  Identities=11%  Similarity=0.021  Sum_probs=18.5

Q ss_pred             cccCCCCCccEEEEeecCccc-----cccccc-cccCcEEEEE
Q 039375           62 DELMLLPWLTTLEIDVKNDSI-----LQEGFL-ARKLERFKIS   98 (311)
Q Consensus        62 ~~l~~L~~L~~L~l~~~~~~~-----lp~~~~-l~~L~~l~~~   98 (311)
                      ..+...++|++|+++.+.+..     +.+.+. .+.|+.++++
T Consensus        38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_          38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeee
Confidence            345555666666666655332     111221 4556666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=83.78  E-value=0.16  Score=37.09  Aligned_cols=67  Identities=13%  Similarity=0.110  Sum_probs=41.1

Q ss_pred             CCCCccEEecCCCCCCccc-----ChhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEeecCc
Q 039375            6 QVTKLRLLDLRDCFHLKVI-----APNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDVKND   80 (311)
Q Consensus         6 ~L~~L~~L~L~~c~~l~~l-----p~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~~~~   80 (311)
                      +.++|++|++++++.++.-     -..+ .+.++|++|++++|.+..+-       .....+.++..++++.+++..+..
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al-~~n~~L~~L~Ls~n~l~~~~-------~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPV-------AFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHH-------HHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHH-hcCCccCeeeccCCcccHHH-------HHHHHHHHhhcccchhhhhccccc
Confidence            4678889999886666422     1222 46778899999988764110       111223445567788888876553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.21  E-value=0.46  Score=34.41  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=55.2

Q ss_pred             cCCCCCccEEecCCCCCCcccC----hhHHHhccccceEEeccccceeeeeccccccccccccccCCCCCccEEEEee--
Q 039375            4 LGQVTKLRLLDLRDCFHLKVIA----PNVISSLIRLEELCMGNCSVEWEVERANTERSNASLDELMLLPWLTTLEIDV--   77 (311)
Q Consensus         4 i~~L~~L~~L~L~~c~~l~~lp----~~i~~~L~~Lq~L~l~~~~~~~~~~~p~~~~~~~~l~~l~~L~~L~~L~l~~--   77 (311)
                      +...++|++|++++| .++.-.    ...+....+++++++++|.+..+-       .....+.+...++|+.+++..  
T Consensus        42 l~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g-------~~~l~~~l~~~~~L~~l~L~l~~  113 (166)
T d1io0a_          42 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG-------ILALVEALQSNTSLIELRIDNQS  113 (166)
T ss_dssp             HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH-------HHHHHHGGGGCSSCCEEECCCCS
T ss_pred             HhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchh-------HHHHHHHHHhCccccEEeeccCC
Confidence            456789999999994 665321    122366789999999998865111       122336667788899877753  


Q ss_pred             cCccc-----cccccc-cccCcEEEEE
Q 039375           78 KNDSI-----LQEGFL-ARKLERFKIS   98 (311)
Q Consensus        78 ~~~~~-----lp~~~~-l~~L~~l~~~   98 (311)
                      +.++.     +...+. .++|+.+++.
T Consensus       114 n~i~~~~~~~La~~L~~n~~L~~L~l~  140 (166)
T d1io0a_         114 QPLGNNVEMEIANMLEKNTTLLKFGYH  140 (166)
T ss_dssp             SCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             CcCcHHHHHHHHHHHHhCCCcCEEeCc
Confidence            33322     333332 6778887764